Query 012331
Match_columns 466
No_of_seqs 424 out of 2742
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 01:30:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0504 PyrG CTP synthase (UTP 100.0 3E-185 7E-190 1422.3 39.6 441 1-461 1-443 (533)
2 PLN02327 CTP synthase 100.0 6E-185 1E-189 1456.2 41.9 460 1-460 1-461 (557)
3 KOG2387 CTP synthase (UTP-ammo 100.0 2E-183 4E-188 1387.1 37.2 466 1-466 1-467 (585)
4 TIGR00337 PyrG CTP synthase. C 100.0 5E-176 1E-180 1385.6 42.1 442 1-461 1-443 (525)
5 PRK05380 pyrG CTP synthetase; 100.0 5E-175 1E-179 1378.7 41.4 441 1-461 2-443 (533)
6 PF06418 CTP_synth_N: CTP synt 100.0 6E-142 1E-146 1036.8 17.6 276 1-284 1-276 (276)
7 cd03113 CTGs CTP synthetase (C 100.0 2E-133 5E-138 969.8 23.3 255 2-262 1-255 (255)
8 PRK06186 hypothetical protein; 100.0 3.2E-38 7E-43 306.2 13.6 144 297-461 1-144 (229)
9 COG0505 CarA Carbamoylphosphat 100.0 2.2E-38 4.7E-43 319.8 10.6 205 202-437 67-291 (368)
10 PRK12564 carbamoyl phosphate s 100.0 9.1E-32 2E-36 277.1 11.4 202 203-436 69-288 (360)
11 TIGR01368 CPSaseIIsmall carbam 100.0 1.1E-31 2.5E-36 276.1 11.2 202 202-436 64-283 (358)
12 PLN02771 carbamoyl-phosphate s 100.0 1.2E-31 2.6E-36 279.0 10.9 204 202-437 120-351 (415)
13 PRK12838 carbamoyl phosphate s 100.0 4.8E-31 1E-35 271.1 11.9 198 203-435 67-276 (354)
14 CHL00197 carA carbamoyl-phosph 100.0 2.2E-30 4.7E-35 268.3 10.5 195 202-421 70-293 (382)
15 cd01746 GATase1_CTP_Synthase T 100.0 5E-29 1.1E-33 243.5 14.2 155 298-462 1-156 (235)
16 KOG0370 Multifunctional pyrimi 99.9 1.4E-25 3.1E-30 244.9 11.1 223 178-437 50-281 (1435)
17 COG0118 HisH Glutamine amidotr 99.7 4.2E-17 9.1E-22 155.1 10.4 109 298-446 2-123 (204)
18 PRK08007 para-aminobenzoate sy 99.5 3.2E-14 6.9E-19 134.5 10.5 98 300-421 2-102 (187)
19 cd01744 GATase1_CPSase Small c 99.5 7.4E-14 1.6E-18 130.6 11.5 98 300-421 1-99 (178)
20 PF00117 GATase: Glutamine ami 99.5 8.3E-14 1.8E-18 130.4 9.7 95 302-416 2-97 (192)
21 PRK06895 putative anthranilate 99.5 2.8E-13 6.1E-18 128.0 11.3 96 298-417 2-98 (190)
22 COG0512 PabA Anthranilate/para 99.5 2.7E-13 5.8E-18 128.4 10.3 102 298-421 2-104 (191)
23 TIGR00566 trpG_papA glutamine 99.5 3.1E-13 6.7E-18 127.8 10.4 94 300-417 2-98 (188)
24 PRK07649 para-aminobenzoate/an 99.4 3.5E-13 7.5E-18 128.5 9.9 97 300-418 2-99 (195)
25 PRK06774 para-aminobenzoate sy 99.4 3.5E-13 7.7E-18 127.3 9.4 93 300-416 2-97 (191)
26 CHL00101 trpG anthranilate syn 99.4 5.4E-13 1.2E-17 126.2 10.3 100 300-420 2-101 (190)
27 PLN02335 anthranilate synthase 99.4 7.4E-13 1.6E-17 128.7 10.9 101 295-417 16-117 (222)
28 PRK05670 anthranilate synthase 99.4 7.6E-13 1.6E-17 124.8 10.5 97 300-418 2-99 (189)
29 TIGR00888 guaA_Nterm GMP synth 99.4 8E-13 1.7E-17 124.3 10.3 95 300-418 1-97 (188)
30 PRK07765 para-aminobenzoate sy 99.4 1.1E-12 2.3E-17 126.8 10.5 101 298-417 1-102 (214)
31 PRK01077 cobyrinic acid a,c-di 99.4 2.5E-11 5.4E-16 129.2 21.2 89 297-408 245-339 (451)
32 PRK05637 anthranilate synthase 99.4 1.5E-12 3.3E-17 125.4 10.9 92 299-415 3-97 (208)
33 cd01742 GATase1_GMP_Synthase T 99.4 1.2E-12 2.7E-17 121.6 9.4 96 300-417 1-96 (181)
34 PRK13142 hisH imidazole glycer 99.4 2.6E-12 5.6E-17 122.6 9.8 79 300-408 2-87 (192)
35 CHL00188 hisH imidazole glycer 99.4 3.9E-12 8.5E-17 122.8 11.1 84 298-410 2-93 (210)
36 cd01743 GATase1_Anthranilate_S 99.4 5.1E-12 1.1E-16 118.4 11.3 97 300-418 1-98 (184)
37 PRK08857 para-aminobenzoate sy 99.3 3.8E-12 8.3E-17 120.7 10.1 97 300-418 2-99 (193)
38 PLN02832 glutamine amidotransf 99.3 6E-12 1.3E-16 124.4 11.4 83 298-408 2-89 (248)
39 TIGR01815 TrpE-clade3 anthrani 99.3 1E-11 2.2E-16 138.6 11.4 104 296-421 515-618 (717)
40 PRK13170 hisH imidazole glycer 99.3 1.2E-11 2.6E-16 117.8 10.0 84 298-410 1-89 (196)
41 TIGR00379 cobB cobyrinic acid 99.3 1.9E-10 4.1E-15 122.5 19.8 89 297-408 244-338 (449)
42 PRK14004 hisH imidazole glycer 99.3 1.9E-11 4E-16 118.1 11.0 81 300-409 2-90 (210)
43 PRK00758 GMP synthase subunit 99.3 1.6E-11 3.4E-16 115.2 9.8 91 300-417 2-93 (184)
44 TIGR01823 PabB-fungal aminodeo 99.3 1.5E-11 3.3E-16 137.9 11.3 108 296-421 4-116 (742)
45 TIGR00313 cobQ cobyric acid sy 99.3 3.2E-10 7E-15 121.6 20.8 309 4-408 1-336 (475)
46 PRK13566 anthranilate synthase 99.3 2.1E-11 4.5E-16 136.3 11.4 103 296-420 525-627 (720)
47 PRK00784 cobyric acid synthase 99.2 4.3E-10 9.3E-15 120.9 18.6 85 297-408 251-342 (488)
48 PF00988 CPSase_sm_chain: Carb 99.2 1.9E-12 4E-17 116.2 -1.6 65 202-267 66-130 (131)
49 PRK13896 cobyrinic acid a,c-di 99.2 1.9E-09 4.2E-14 114.4 20.6 293 1-408 1-325 (433)
50 cd01745 GATase1_2 Subgroup of 99.2 1.1E-10 2.4E-15 110.4 9.8 86 314-416 22-125 (189)
51 PLN02347 GMP synthetase 99.2 1.4E-10 3E-15 126.0 11.0 94 299-416 12-111 (536)
52 PRK13146 hisH imidazole glycer 99.2 1.3E-10 2.7E-15 112.0 9.4 84 298-407 2-93 (209)
53 PRK14607 bifunctional glutamin 99.2 1E-10 2.2E-15 127.1 9.8 99 300-420 2-102 (534)
54 PLN02889 oxo-acid-lyase/anthra 99.1 1.8E-10 3.8E-15 130.9 11.1 101 297-418 81-189 (918)
55 PRK13181 hisH imidazole glycer 99.1 1.8E-10 3.9E-15 109.6 8.9 88 300-416 2-108 (199)
56 PRK06490 glutamine amidotransf 99.1 2.9E-10 6.2E-15 111.8 10.3 101 297-418 7-113 (239)
57 PRK09522 bifunctional glutamin 99.1 2.3E-10 5.1E-15 124.2 9.3 99 298-416 2-102 (531)
58 cd01748 GATase1_IGP_Synthase T 99.1 2.5E-10 5.4E-15 108.3 7.8 80 300-407 1-87 (198)
59 PRK13152 hisH imidazole glycer 99.1 5.2E-10 1.1E-14 106.7 9.3 79 300-407 2-89 (201)
60 PRK13525 glutamine amidotransf 99.1 5.1E-10 1.1E-14 106.2 9.1 85 298-410 2-91 (189)
61 PRK13527 glutamine amidotransf 99.1 6.8E-10 1.5E-14 105.8 10.0 91 298-411 1-97 (200)
62 TIGR03800 PLP_synth_Pdx2 pyrid 99.1 4.3E-10 9.4E-15 106.4 8.4 82 299-408 1-87 (184)
63 PRK00074 guaA GMP synthase; Re 99.0 5.2E-10 1.1E-14 121.1 9.7 93 299-415 5-99 (511)
64 PRK13143 hisH imidazole glycer 99.0 8.8E-10 1.9E-14 105.2 9.9 83 298-407 1-87 (200)
65 PRK11366 puuD gamma-glutamyl-g 99.0 4.9E-10 1.1E-14 111.0 8.4 102 297-414 7-130 (254)
66 PF07722 Peptidase_C26: Peptid 99.0 5.3E-10 1.2E-14 108.3 6.9 87 314-417 27-132 (217)
67 PRK07053 glutamine amidotransf 99.0 1.4E-09 3.1E-14 106.5 10.0 96 299-414 4-106 (234)
68 PLN02617 imidazole glycerol ph 99.0 1.6E-09 3.4E-14 117.8 11.1 84 297-408 6-96 (538)
69 COG0518 GuaA GMP synthase - Gl 99.0 2.7E-09 5.8E-14 102.4 11.1 101 299-424 3-109 (198)
70 PRK09065 glutamine amidotransf 99.0 8.8E-10 1.9E-14 108.1 7.3 58 359-416 51-113 (237)
71 PRK13141 hisH imidazole glycer 99.0 1.5E-09 3.3E-14 103.5 8.7 82 299-407 1-88 (205)
72 KOG1224 Para-aminobenzoate (PA 99.0 2E-09 4.3E-14 114.3 9.4 100 296-414 13-118 (767)
73 cd01741 GATase1_1 Subgroup of 98.9 3.1E-09 6.8E-14 99.5 9.5 60 359-418 43-108 (188)
74 PRK05665 amidotransferase; Pro 98.9 6.1E-09 1.3E-13 102.6 11.5 59 359-417 54-117 (240)
75 TIGR01855 IMP_synth_hisH imida 98.9 3E-09 6.4E-14 101.3 8.9 78 300-407 1-87 (196)
76 PRK13526 glutamine amidotransf 98.9 2.9E-09 6.3E-14 100.7 8.2 81 298-407 3-88 (179)
77 COG2071 Predicted glutamine am 98.9 4.4E-09 9.4E-14 103.0 8.2 57 358-414 56-130 (243)
78 KOG0026 Anthranilate synthase, 98.9 6.8E-09 1.5E-13 96.5 8.7 96 299-416 20-117 (223)
79 TIGR01737 FGAM_synth_I phospho 98.9 1.1E-08 2.4E-13 99.7 10.6 90 298-412 1-101 (227)
80 PRK01175 phosphoribosylformylg 98.9 1E-08 2.2E-13 102.3 10.3 90 297-406 3-104 (261)
81 PRK07567 glutamine amidotransf 98.8 9.4E-09 2E-13 101.3 8.8 56 359-414 48-116 (242)
82 cd01747 GATase1_Glutamyl_Hydro 98.8 1.3E-08 2.8E-13 102.1 9.1 82 314-412 23-113 (273)
83 PRK08250 glutamine amidotransf 98.8 4.4E-08 9.6E-13 96.1 10.5 57 359-415 42-108 (235)
84 cd01750 GATase1_CobQ Type 1 gl 98.7 2.2E-08 4.7E-13 95.3 7.8 83 300-408 1-89 (194)
85 COG0047 PurL Phosphoribosylfor 98.7 4.7E-08 1E-12 95.1 9.7 84 297-405 2-95 (231)
86 KOG0623 Glutamine amidotransfe 98.7 4.8E-08 1E-12 99.5 9.6 78 300-405 4-88 (541)
87 cd01749 GATase1_PB Glutamine A 98.7 3.8E-08 8.3E-13 92.7 7.6 75 312-410 9-88 (183)
88 cd01740 GATase1_FGAR_AT Type 1 98.7 7E-08 1.5E-12 94.7 9.1 83 312-412 11-105 (238)
89 PRK03619 phosphoribosylformylg 98.6 2E-07 4.3E-12 90.6 10.3 90 298-412 1-102 (219)
90 cd03130 GATase1_CobB Type 1 gl 98.5 1.7E-07 3.7E-12 89.5 7.5 75 312-408 12-92 (198)
91 PRK06278 cobyrinic acid a,c-di 98.5 2.1E-07 4.6E-12 100.0 7.8 78 298-408 1-82 (476)
92 PF13507 GATase_5: CobB/CobQ-l 98.3 1.2E-06 2.6E-11 87.4 7.4 89 297-405 1-104 (259)
93 KOG1622 GMP synthase [Nucleoti 98.2 1.3E-06 2.8E-11 91.9 5.7 56 361-425 58-119 (552)
94 COG0311 PDX2 Predicted glutami 98.1 5E-06 1.1E-10 78.8 7.2 84 298-409 1-90 (194)
95 COG1797 CobB Cobyrinic acid a, 98.1 0.00028 6.1E-09 74.9 20.6 129 298-464 246-382 (451)
96 KOG3179 Predicted glutamine sy 98.1 1.5E-05 3.3E-10 76.6 8.4 59 358-416 55-118 (245)
97 PRK05368 homoserine O-succinyl 98.0 3E-05 6.6E-10 79.1 10.9 113 296-411 34-155 (302)
98 cd03146 GAT1_Peptidase_E Type 98.0 1.4E-05 3.1E-10 77.1 7.0 93 296-406 30-129 (212)
99 cd01653 GATase1 Type 1 glutami 98.0 4.4E-05 9.6E-10 61.4 8.4 76 312-404 13-92 (115)
100 TIGR01857 FGAM-synthase phosph 97.9 4.7E-05 1E-09 89.8 10.2 96 296-405 976-1088(1239)
101 PF07685 GATase_3: CobB/CobQ-l 97.9 1.5E-05 3.3E-10 73.5 4.5 51 358-408 3-59 (158)
102 cd03144 GATase1_ScBLP_like Typ 97.8 2.4E-05 5.1E-10 69.2 5.0 74 310-404 12-90 (114)
103 PLN03206 phosphoribosylformylg 97.8 6.6E-05 1.4E-09 89.2 10.1 91 296-406 1036-1141(1307)
104 PRK05297 phosphoribosylformylg 97.7 0.00012 2.6E-09 87.3 10.1 91 296-406 1034-1139(1290)
105 TIGR01735 FGAM_synt phosphorib 97.7 0.00017 3.7E-09 86.0 10.0 90 296-405 1054-1158(1310)
106 PF01174 SNO: SNO glutamine am 97.6 8.2E-05 1.8E-09 71.0 5.3 71 312-406 7-83 (188)
107 cd03128 GAT_1 Type 1 glutamine 97.6 0.00016 3.6E-09 55.4 6.1 75 313-404 14-92 (92)
108 TIGR01382 PfpI intracellular p 97.4 0.0012 2.7E-08 60.2 9.5 45 362-406 60-107 (166)
109 PHA03366 FGAM-synthase; Provis 97.3 0.00093 2E-08 79.9 10.0 91 294-405 1025-1131(1304)
110 cd03131 GATase1_HTS Type 1 glu 97.2 0.00094 2E-08 63.3 7.6 62 360-421 60-129 (175)
111 TIGR01739 tegu_FGAM_synt herpe 97.2 0.0014 3E-08 78.0 9.6 90 295-405 927-1032(1202)
112 cd03134 GATase1_PfpI_like A ty 97.1 0.0031 6.8E-08 57.5 9.5 45 362-406 62-109 (165)
113 PRK11780 isoprenoid biosynthes 96.7 0.0028 6.1E-08 61.8 6.1 49 360-408 83-145 (217)
114 COG1492 CobQ Cobyric acid synt 96.6 0.002 4.4E-08 69.4 4.7 110 2-153 2-139 (486)
115 cd03133 GATase1_ES1 Type 1 glu 96.6 0.0041 9E-08 60.6 6.0 56 360-415 80-151 (213)
116 cd03132 GATase1_catalase Type 96.5 0.015 3.3E-07 51.8 9.0 99 299-405 3-109 (142)
117 KOG3210 Imidazoleglycerol-phos 96.5 0.0084 1.8E-07 56.6 7.2 89 299-409 13-109 (226)
118 cd03169 GATase1_PfpI_1 Type 1 96.5 0.0038 8.2E-08 58.2 5.0 46 362-407 76-124 (180)
119 PRK05282 (alpha)-aspartyl dipe 96.3 0.011 2.3E-07 58.6 7.3 107 280-409 16-131 (233)
120 COG0693 ThiJ Putative intracel 96.1 0.032 7E-07 52.1 9.2 102 298-405 3-113 (188)
121 cd03137 GATase1_AraC_1 AraC tr 96.1 0.027 5.8E-07 52.3 8.6 48 359-406 61-111 (187)
122 PRK12374 putative dithiobiotin 96.1 0.031 6.8E-07 54.4 9.1 169 1-221 2-176 (231)
123 PRK00090 bioD dithiobiotin syn 95.9 0.02 4.4E-07 54.8 6.9 167 4-221 2-174 (222)
124 PRK11574 oxidative-stress-resi 95.9 0.075 1.6E-06 50.1 10.5 98 299-405 4-113 (196)
125 cd03140 GATase1_PfpI_3 Type 1 95.8 0.048 1E-06 50.3 8.7 46 361-406 59-106 (170)
126 cd02037 MRP-like MRP (Multiple 95.7 0.079 1.7E-06 48.6 9.5 128 7-219 4-131 (169)
127 TIGR01383 not_thiJ DJ-1 family 95.6 0.078 1.7E-06 48.8 9.3 102 299-406 1-111 (179)
128 cd03135 GATase1_DJ-1 Type 1 gl 95.5 0.079 1.7E-06 47.8 8.8 47 361-407 59-109 (163)
129 cd03147 GATase1_Ydr533c_like T 95.3 0.03 6.4E-07 55.2 5.7 48 360-407 92-143 (231)
130 PRK13768 GTPase; Provisional 95.2 0.13 2.9E-06 51.0 10.1 39 2-42 3-41 (253)
131 PF01965 DJ-1_PfpI: DJ-1/PfpI 94.9 0.021 4.5E-07 51.6 2.9 46 361-406 36-86 (147)
132 COG0132 BioD Dethiobiotin synt 94.8 0.15 3.3E-06 50.2 8.8 183 1-230 2-186 (223)
133 cd01983 Fer4_NifH The Fer4_Nif 94.7 0.089 1.9E-06 42.0 6.0 33 4-38 2-34 (99)
134 cd03139 GATase1_PfpI_2 Type 1 94.7 0.098 2.1E-06 48.2 6.9 46 360-405 60-108 (183)
135 PRK04155 chaperone protein Hch 94.6 0.05 1.1E-06 55.4 5.3 46 360-405 145-194 (287)
136 cd03129 GAT1_Peptidase_E_like 94.6 0.23 4.9E-06 47.6 9.5 108 283-407 17-130 (210)
137 PRK09435 membrane ATPase/prote 94.3 0.29 6.2E-06 51.0 10.0 62 3-66 58-127 (332)
138 cd03141 GATase1_Hsp31_like Typ 94.2 0.068 1.5E-06 51.9 4.9 47 361-407 89-139 (221)
139 cd03148 GATase1_EcHsp31_like T 94.1 0.083 1.8E-06 52.1 5.4 46 361-406 95-144 (232)
140 PF09825 BPL_N: Biotin-protein 94.1 0.078 1.7E-06 55.8 5.4 46 360-405 47-96 (367)
141 PRK05632 phosphate acetyltrans 94.0 0.4 8.6E-06 54.3 11.4 37 1-38 2-38 (684)
142 cd03138 GATase1_AraC_2 AraC tr 93.9 0.085 1.8E-06 49.4 5.0 48 359-406 66-119 (195)
143 PRK14974 cell division protein 93.7 1.1 2.5E-05 46.6 13.0 39 2-42 141-179 (336)
144 TIGR01968 minD_bact septum sit 93.5 1.4 3.1E-05 42.5 12.8 40 2-42 2-41 (261)
145 cd00550 ArsA_ATPase Oxyanion-t 93.4 0.35 7.5E-06 48.0 8.4 39 2-42 1-39 (254)
146 PRK10867 signal recognition pa 93.2 1.4 3.1E-05 47.4 13.3 39 2-42 101-140 (433)
147 TIGR00750 lao LAO/AO transport 93.1 0.63 1.4E-05 47.3 10.0 43 1-45 34-76 (300)
148 cd03136 GATase1_AraC_ArgR_like 93.1 0.15 3.2E-06 47.5 5.0 46 360-405 62-109 (185)
149 KOG1559 Gamma-glutamyl hydrola 92.9 0.19 4.1E-06 50.3 5.6 79 314-409 80-165 (340)
150 TIGR00064 ftsY signal recognit 92.8 2.4 5.2E-05 42.7 13.6 39 2-42 73-111 (272)
151 PRK11249 katE hydroperoxidase 92.6 0.47 1E-05 54.3 9.0 103 296-406 596-706 (752)
152 PF13278 DUF4066: Putative ami 92.2 0.21 4.6E-06 45.6 4.7 47 360-406 59-108 (166)
153 COG3442 Predicted glutamine am 92.1 0.093 2E-06 51.6 2.3 54 361-414 51-114 (250)
154 TIGR03371 cellulose_yhjQ cellu 91.9 0.94 2E-05 43.6 9.1 41 1-42 1-41 (246)
155 TIGR01969 minD_arch cell divis 91.8 0.99 2.1E-05 43.4 9.1 34 9-42 7-40 (251)
156 PHA02518 ParA-like protein; Pr 91.7 0.68 1.5E-05 43.3 7.7 33 11-43 9-41 (211)
157 PRK11889 flhF flagellar biosyn 91.4 4.7 0.0001 43.5 14.2 144 2-217 242-385 (436)
158 TIGR00347 bioD dethiobiotin sy 91.2 1 2.3E-05 40.9 8.2 153 10-216 5-165 (166)
159 cd03114 ArgK-like The function 91.1 1.4 3.1E-05 40.2 8.8 37 4-42 2-38 (148)
160 PF04204 HTS: Homoserine O-suc 90.8 0.5 1.1E-05 48.5 6.1 116 296-416 33-160 (298)
161 PF13500 AAA_26: AAA domain; P 90.7 0.67 1.5E-05 43.6 6.6 163 2-219 1-168 (199)
162 PRK09393 ftrA transcriptional 90.0 0.44 9.6E-06 48.4 5.0 48 358-405 71-120 (322)
163 TIGR00959 ffh signal recogniti 89.7 2.7 5.9E-05 45.3 10.9 141 3-217 101-247 (428)
164 TIGR02069 cyanophycinase cyano 89.0 2.4 5.3E-05 42.3 9.2 109 283-405 16-130 (250)
165 PRK13849 putative crown gall t 88.8 3.4 7.5E-05 40.5 10.1 44 1-45 1-44 (231)
166 TIGR01001 metA homoserine O-su 88.5 5.3 0.00011 41.2 11.3 118 296-417 34-162 (300)
167 cd03115 SRP The signal recogni 87.9 6.6 0.00014 35.9 10.8 37 4-42 3-39 (173)
168 PRK14494 putative molybdopteri 87.4 1.1 2.4E-05 44.3 5.6 37 1-39 1-37 (229)
169 TIGR03499 FlhF flagellar biosy 87.4 0.95 2.1E-05 45.7 5.3 40 2-43 195-236 (282)
170 PRK10818 cell division inhibit 87.3 8 0.00017 38.0 11.7 40 2-42 3-42 (270)
171 cd02042 ParA ParA and ParB of 87.0 2.6 5.5E-05 35.2 6.9 36 7-42 4-39 (104)
172 cd02035 ArsA ArsA ATPase funct 86.3 5.5 0.00012 38.3 9.7 39 4-44 2-40 (217)
173 KOG1907 Phosphoribosylformylgl 85.6 1.7 3.6E-05 50.4 6.4 89 297-406 1058-1162(1320)
174 cd03145 GAT1_cyanophycinase Ty 85.3 4.3 9.4E-05 39.4 8.4 109 283-406 17-132 (217)
175 CHL00072 chlL photochlorophyll 84.9 1.7 3.7E-05 44.0 5.7 43 1-46 1-43 (290)
176 PRK13232 nifH nitrogenase redu 84.8 1.5 3.3E-05 43.4 5.2 44 1-46 1-44 (273)
177 PRK14493 putative bifunctional 84.6 2.2 4.8E-05 43.2 6.3 39 1-42 1-39 (274)
178 cd02040 NifH NifH gene encodes 84.3 1.9 4.1E-05 42.2 5.5 44 1-46 1-44 (270)
179 COG2894 MinD Septum formation 84.3 1.5 3.2E-05 43.7 4.7 39 1-40 2-40 (272)
180 PRK13230 nitrogenase reductase 84.0 2.1 4.5E-05 42.6 5.7 45 1-47 1-45 (279)
181 cd03116 MobB Molybdenum is an 83.9 2.9 6.2E-05 38.9 6.2 40 1-42 1-40 (159)
182 KOG2764 Putative transcription 83.8 1.6 3.5E-05 43.4 4.7 45 361-405 66-114 (247)
183 COG0003 ArsA Predicted ATPase 83.0 2.2 4.7E-05 44.4 5.5 49 1-51 2-50 (322)
184 cd03109 DTBS Dethiobiotin synt 82.1 3.6 7.8E-05 36.8 6.0 37 3-42 2-38 (134)
185 cd02029 PRK_like Phosphoribulo 81.8 2.3 5E-05 43.3 5.1 43 4-48 2-44 (277)
186 PRK01911 ppnK inorganic polyph 81.6 3.4 7.4E-05 42.3 6.3 92 298-401 1-98 (292)
187 PF02374 ArsA_ATPase: Anion-tr 81.1 2.3 4.9E-05 43.6 4.9 42 1-44 1-42 (305)
188 COG4285 Uncharacterized conser 80.8 3.3 7.2E-05 41.0 5.5 69 317-401 20-92 (253)
189 PRK11670 antiporter inner memb 80.3 16 0.00034 38.5 10.9 45 2-47 108-152 (369)
190 PF01656 CbiA: CobQ/CobB/MinD/ 80.0 2.8 6E-05 38.4 4.7 36 10-45 6-41 (195)
191 TIGR01425 SRP54_euk signal rec 80.0 2.8 6E-05 45.3 5.3 40 2-43 101-140 (429)
192 TIGR00176 mobB molybdopterin-g 79.4 3.4 7.4E-05 38.1 5.0 35 4-40 2-36 (155)
193 PRK12724 flagellar biosynthesi 78.4 3.3 7.2E-05 44.7 5.2 41 2-44 224-265 (432)
194 TIGR01007 eps_fam capsular exo 78.2 4.4 9.6E-05 38.1 5.5 42 1-43 17-58 (204)
195 cd02033 BchX Chlorophyllide re 77.8 4.1 8.9E-05 42.4 5.6 42 1-44 31-72 (329)
196 CHL00175 minD septum-site dete 77.7 4.6 0.0001 40.1 5.7 45 2-47 16-61 (281)
197 PRK13233 nifH nitrogenase redu 77.5 4.2 9.1E-05 40.2 5.4 43 1-45 2-45 (275)
198 PRK07667 uridine kinase; Provi 76.5 5.3 0.00011 37.8 5.5 40 3-44 19-58 (193)
199 PRK03372 ppnK inorganic polyph 76.2 6.1 0.00013 40.8 6.3 93 299-401 7-106 (306)
200 PRK10416 signal recognition pa 75.9 5 0.00011 41.5 5.6 39 2-42 115-153 (318)
201 PF03575 Peptidase_S51: Peptid 75.8 3 6.5E-05 38.0 3.5 73 315-403 4-81 (154)
202 cd02028 UMPK_like Uridine mono 75.6 5.6 0.00012 37.3 5.4 41 4-46 2-42 (179)
203 PRK13185 chlL protochlorophyll 75.4 5.9 0.00013 39.0 5.7 42 2-45 3-44 (270)
204 PRK13235 nifH nitrogenase redu 74.9 5.5 0.00012 39.5 5.4 43 1-45 1-43 (274)
205 cd02034 CooC The accessory pro 74.8 6 0.00013 34.7 5.0 36 4-41 2-37 (116)
206 PLN02929 NADH kinase 74.7 5.4 0.00012 41.2 5.4 63 311-400 34-96 (301)
207 PF06564 YhjQ: YhjQ protein; 74.2 5.7 0.00012 39.8 5.3 46 1-47 1-52 (243)
208 TIGR03018 pepcterm_TyrKin exop 74.0 7.3 0.00016 37.0 5.8 41 2-43 36-77 (207)
209 PRK13236 nitrogenase reductase 73.2 6.3 0.00014 39.9 5.5 42 2-45 7-48 (296)
210 PRK10037 cell division protein 73.1 5.7 0.00012 38.9 5.0 41 1-42 1-41 (250)
211 PRK12726 flagellar biosynthesi 72.5 6.5 0.00014 42.1 5.5 39 2-42 207-245 (407)
212 PRK02155 ppnK NAD(+)/NADH kina 72.3 7.4 0.00016 39.8 5.7 88 299-401 7-97 (291)
213 PRK13234 nifH nitrogenase redu 72.3 7.4 0.00016 39.4 5.7 43 1-45 4-46 (295)
214 cd02036 MinD Bacterial cell di 72.3 5.7 0.00012 35.9 4.5 34 9-42 6-39 (179)
215 PRK14076 pnk inorganic polypho 72.2 9 0.00019 42.7 6.8 92 295-401 288-382 (569)
216 cd02117 NifH_like This family 71.9 7.4 0.00016 37.1 5.3 42 3-46 2-43 (212)
217 cd01672 TMPK Thymidine monopho 71.9 7 0.00015 35.7 5.0 36 2-39 1-36 (200)
218 cd02032 Bchl_like This family 70.9 9.5 0.00021 37.5 6.0 40 4-45 3-42 (267)
219 PF10087 DUF2325: Uncharacteri 70.9 19 0.00042 30.3 7.1 79 299-396 1-80 (97)
220 PRK05703 flhF flagellar biosyn 70.9 6.4 0.00014 42.3 5.1 39 2-42 222-262 (424)
221 PRK04539 ppnK inorganic polyph 70.7 11 0.00025 38.6 6.6 90 299-401 7-102 (296)
222 PRK14077 pnk inorganic polypho 68.4 11 0.00023 38.6 5.9 83 299-401 12-98 (287)
223 PRK13231 nitrogenase reductase 67.6 5.7 0.00012 39.0 3.6 42 1-45 2-43 (264)
224 PF02572 CobA_CobO_BtuR: ATP:c 67.6 4.7 0.0001 38.3 2.9 29 11-39 9-39 (172)
225 COG3340 PepE Peptidase E [Amin 67.2 18 0.0004 35.7 6.9 92 297-405 32-132 (224)
226 PRK06731 flhF flagellar biosyn 67.2 1.5E+02 0.0032 30.1 15.4 143 3-218 77-220 (270)
227 PRK10751 molybdopterin-guanine 67.1 12 0.00026 35.5 5.6 38 2-41 7-44 (173)
228 PRK13869 plasmid-partitioning 67.0 8.6 0.00019 41.0 5.1 43 2-45 122-164 (405)
229 TIGR01287 nifH nitrogenase iro 66.7 10 0.00022 37.4 5.3 41 3-45 2-42 (275)
230 PRK02649 ppnK inorganic polyph 66.7 13 0.00029 38.2 6.2 36 361-401 67-102 (305)
231 KOG2825 Putative arsenite-tran 66.3 6.7 0.00015 39.9 3.8 43 2-46 20-62 (323)
232 PRK00771 signal recognition pa 66.1 10 0.00022 41.1 5.4 39 2-42 96-134 (437)
233 PRK03378 ppnK inorganic polyph 65.3 15 0.00033 37.5 6.3 87 299-401 7-97 (292)
234 TIGR02016 BchX chlorophyllide 65.1 11 0.00024 38.3 5.3 41 2-44 1-41 (296)
235 PRK04885 ppnK inorganic polyph 64.2 12 0.00026 37.8 5.2 35 362-401 35-71 (265)
236 PRK07414 cob(I)yrinic acid a,c 62.7 6.8 0.00015 37.5 3.0 28 12-39 28-57 (178)
237 PF00142 Fer4_NifH: 4Fe-4S iro 62.5 9.6 0.00021 38.8 4.1 32 12-43 9-40 (273)
238 PLN02727 NAD kinase 61.2 16 0.00035 43.0 6.1 92 298-401 679-777 (986)
239 PRK03708 ppnK inorganic polyph 60.9 14 0.0003 37.5 5.0 87 298-401 1-90 (277)
240 PF06283 ThuA: Trehalose utili 60.8 21 0.00045 34.2 6.0 43 358-400 48-90 (217)
241 COG1192 Soj ATPases involved i 60.0 14 0.00031 35.9 4.9 35 10-44 10-45 (259)
242 cd03110 Fer4_NifH_child This p 59.2 86 0.0019 28.6 9.6 29 11-43 8-36 (179)
243 PRK14075 pnk inorganic polypho 58.3 26 0.00056 35.1 6.4 72 298-401 1-72 (256)
244 PF14403 CP_ATPgrasp_2: Circul 57.6 72 0.0016 34.8 10.0 131 207-373 100-237 (445)
245 PF13614 AAA_31: AAA domain; P 57.0 24 0.00053 31.2 5.5 40 2-42 1-40 (157)
246 PRK01184 hypothetical protein; 57.0 13 0.00029 34.2 3.9 28 1-34 1-28 (184)
247 PRK14489 putative bifunctional 56.9 20 0.00043 37.6 5.5 40 1-42 205-244 (366)
248 cd01830 XynE_like SGNH_hydrola 56.8 41 0.0009 31.5 7.2 87 92-186 21-131 (204)
249 TIGR01281 DPOR_bchL light-inde 56.4 23 0.00051 34.7 5.7 35 11-45 8-42 (268)
250 PF02424 ApbE: ApbE family; I 56.2 9.3 0.0002 38.0 2.8 91 11-113 110-214 (254)
251 PF00485 PRK: Phosphoribulokin 56.0 14 0.00031 34.6 3.9 39 3-43 1-43 (194)
252 COG0521 MoaB Molybdopterin bio 55.5 52 0.0011 31.3 7.5 74 89-173 27-115 (169)
253 PF00448 SRP54: SRP54-type pro 55.5 25 0.00053 33.7 5.5 40 2-43 2-41 (196)
254 PRK06696 uridine kinase; Valid 54.8 26 0.00056 33.8 5.6 41 3-45 24-64 (223)
255 cd06300 PBP1_ABC_sugar_binding 54.2 81 0.0018 30.1 8.9 33 361-397 59-91 (272)
256 TIGR01012 Sa_S2_E_A ribosomal 54.0 56 0.0012 31.8 7.6 77 299-399 63-139 (196)
257 COG2109 BtuR ATP:corrinoid ade 53.8 12 0.00027 36.3 3.1 30 10-39 33-64 (198)
258 TIGR01133 murG undecaprenyldip 53.5 20 0.00044 35.7 4.8 34 1-38 1-35 (348)
259 COG1703 ArgK Putative periplas 53.4 17 0.00036 37.9 4.1 93 4-146 54-150 (323)
260 PRK14495 putative molybdopteri 52.7 22 0.00048 38.7 5.1 39 1-41 1-39 (452)
261 PRK13886 conjugal transfer pro 52.5 25 0.00055 35.1 5.2 39 4-42 4-42 (241)
262 PF01583 APS_kinase: Adenylyls 52.2 23 0.00051 33.1 4.6 36 3-40 4-39 (156)
263 COG4126 Hydantoin racemase [Am 52.1 18 0.00038 36.0 3.9 45 361-412 68-112 (230)
264 PF03205 MobB: Molybdopterin g 51.7 27 0.00059 31.6 4.9 37 2-40 1-37 (140)
265 PHA02519 plasmid partition pro 51.5 16 0.00034 38.8 3.8 34 13-46 117-151 (387)
266 COG3155 ElbB Uncharacterized p 51.3 19 0.00041 34.3 3.8 52 361-412 84-149 (217)
267 PF14359 DUF4406: Domain of un 51.3 91 0.002 26.5 7.7 72 312-395 17-90 (92)
268 COG1214 Inactive homolog of me 50.9 19 0.0004 35.3 3.9 39 361-399 57-97 (220)
269 PRK12723 flagellar biosynthesi 50.6 26 0.00057 37.4 5.2 39 2-42 175-217 (388)
270 PRK06179 short chain dehydroge 50.5 19 0.0004 34.9 3.9 34 2-41 5-38 (270)
271 TIGR00041 DTMP_kinase thymidyl 50.4 31 0.00066 31.9 5.2 34 2-37 4-37 (195)
272 PLN02935 Bifunctional NADH kin 50.3 31 0.00067 38.2 5.8 35 361-400 261-295 (508)
273 PRK02006 murD UDP-N-acetylmura 50.1 26 0.00056 38.0 5.3 31 2-36 122-152 (498)
274 cd02038 FleN-like FleN is a me 50.0 36 0.00077 30.3 5.3 38 4-42 2-39 (139)
275 PRK15453 phosphoribulokinase; 49.8 24 0.00052 36.3 4.6 48 2-51 6-53 (290)
276 PRK01231 ppnK inorganic polyph 48.7 34 0.00074 35.1 5.6 87 299-401 6-96 (295)
277 PRK06953 short chain dehydroge 48.6 24 0.00052 33.1 4.2 34 1-40 1-34 (222)
278 TIGR03029 EpsG chain length de 48.6 30 0.00065 34.1 5.1 40 2-42 104-143 (274)
279 PF13472 Lipase_GDSL_2: GDSL-l 48.2 27 0.00058 30.4 4.2 93 86-189 11-116 (179)
280 PTZ00254 40S ribosomal protein 48.0 89 0.0019 31.6 8.2 95 299-417 73-187 (249)
281 COG4977 Transcriptional regula 47.7 28 0.0006 36.5 4.8 47 359-405 73-122 (328)
282 TIGR03815 CpaE_hom_Actino heli 47.4 38 0.00081 34.5 5.7 42 2-44 94-135 (322)
283 PRK05693 short chain dehydroge 47.0 22 0.00048 34.6 3.8 32 1-38 1-32 (274)
284 COG1348 NifH Nitrogenase subun 46.8 18 0.00039 36.5 3.1 30 13-42 11-40 (278)
285 PRK07102 short chain dehydroge 46.8 22 0.00047 33.8 3.6 35 1-41 1-35 (243)
286 cd03794 GT1_wbuB_like This fam 46.3 2.8E+02 0.006 26.7 15.9 42 2-43 1-43 (394)
287 COG0529 CysC Adenylylsulfate k 46.1 33 0.00072 33.3 4.6 33 3-37 25-57 (197)
288 PRK04761 ppnK inorganic polyph 46.1 15 0.00032 36.9 2.4 37 360-401 23-59 (246)
289 PF09140 MipZ: ATPase MipZ; I 46.0 30 0.00066 35.1 4.6 40 3-42 1-40 (261)
290 PRK03501 ppnK inorganic polyph 45.9 37 0.00081 34.3 5.3 34 362-400 39-74 (264)
291 COG4090 Uncharacterized protei 45.5 28 0.0006 32.0 3.8 42 358-399 81-124 (154)
292 PRK05439 pantothenate kinase; 44.6 37 0.0008 35.2 5.1 41 3-45 88-130 (311)
293 PRK06940 short chain dehydroge 44.6 31 0.00068 33.9 4.5 31 2-40 3-33 (275)
294 PRK00561 ppnK inorganic polyph 44.4 17 0.00037 36.7 2.6 36 361-401 32-67 (259)
295 COG1763 MobB Molybdopterin-gua 44.4 62 0.0013 30.4 6.1 55 1-57 2-57 (161)
296 PRK07890 short chain dehydroge 43.9 29 0.00062 33.1 4.0 32 2-39 6-37 (258)
297 PRK06101 short chain dehydroge 43.7 27 0.00058 33.3 3.8 33 1-39 1-33 (240)
298 PRK07933 thymidylate kinase; V 43.4 45 0.00097 32.2 5.2 37 2-40 1-37 (213)
299 PRK04296 thymidine kinase; Pro 43.2 57 0.0012 30.7 5.8 38 2-45 3-42 (190)
300 PRK05854 short chain dehydroge 43.0 25 0.00055 35.4 3.6 30 2-37 15-44 (313)
301 cd01836 FeeA_FeeB_like SGNH_hy 42.7 54 0.0012 30.0 5.5 59 119-184 54-116 (191)
302 PRK04020 rps2P 30S ribosomal p 42.7 1.1E+02 0.0023 30.0 7.7 76 299-398 69-144 (204)
303 PRK06851 hypothetical protein; 42.6 42 0.00091 35.6 5.3 38 2-41 31-70 (367)
304 PRK08177 short chain dehydroge 42.3 40 0.00086 31.7 4.6 34 1-40 1-34 (225)
305 PRK08727 hypothetical protein; 42.1 19 0.0004 35.2 2.4 59 3-63 43-101 (233)
306 KOG1252 Cystathionine beta-syn 41.7 16 0.00034 38.5 1.9 43 10-52 216-260 (362)
307 PF08245 Mur_ligase_M: Mur lig 41.7 73 0.0016 29.3 6.2 26 13-38 4-29 (188)
308 PRK06947 glucose-1-dehydrogena 41.7 32 0.0007 32.6 3.9 30 1-36 2-31 (248)
309 COG1897 MetA Homoserine trans- 41.7 1.5E+02 0.0032 30.5 8.5 117 296-416 34-161 (307)
310 PF01513 NAD_kinase: ATP-NAD k 41.6 20 0.00043 36.1 2.6 37 360-401 74-110 (285)
311 PRK06924 short chain dehydroge 41.5 42 0.00091 31.9 4.7 31 1-37 1-31 (251)
312 PRK03846 adenylylsulfate kinas 41.5 44 0.00094 31.5 4.8 40 2-43 25-64 (198)
313 cd02023 UMPK Uridine monophosp 41.3 40 0.00086 31.5 4.4 38 3-44 1-38 (198)
314 cd01391 Periplasmic_Binding_Pr 40.7 1.5E+02 0.0033 26.8 8.2 31 362-397 58-88 (269)
315 TIGR03453 partition_RepA plasm 40.6 40 0.00087 35.4 4.8 36 9-44 111-146 (387)
316 PRK12742 oxidoreductase; Provi 40.5 33 0.00072 32.2 3.8 29 2-36 7-35 (237)
317 PRK06398 aldose dehydrogenase; 40.2 31 0.00068 33.4 3.7 30 2-37 7-36 (258)
318 PRK07035 short chain dehydroge 39.9 33 0.00071 32.7 3.7 30 2-37 9-38 (252)
319 PRK12748 3-ketoacyl-(acyl-carr 39.7 35 0.00077 32.7 3.9 33 2-39 6-39 (256)
320 PF09152 DUF1937: Domain of un 39.4 23 0.00051 31.7 2.3 36 360-395 77-112 (116)
321 PRK12828 short chain dehydroge 39.2 40 0.00087 31.4 4.1 34 2-41 8-41 (239)
322 PRK03333 coaE dephospho-CoA ki 39.1 32 0.0007 36.5 3.8 28 1-34 1-28 (395)
323 PRK11519 tyrosine kinase; Prov 39.0 51 0.0011 37.8 5.6 40 2-42 527-566 (719)
324 PLN02913 dihydrofolate synthet 38.9 21 0.00047 39.2 2.5 32 2-37 76-107 (510)
325 COG0489 Mrp ATPases involved i 38.9 50 0.0011 33.2 5.0 162 2-217 58-227 (265)
326 cd03111 CpaE_like This protein 38.8 42 0.00092 28.5 3.8 33 11-43 8-41 (106)
327 PRK08303 short chain dehydroge 38.7 32 0.0007 34.7 3.6 30 2-37 9-38 (305)
328 PLN02422 dephospho-CoA kinase 38.7 40 0.00087 33.5 4.1 28 1-34 1-28 (232)
329 cd06305 PBP1_methylthioribose_ 38.6 2E+02 0.0043 27.3 8.9 33 361-397 54-86 (273)
330 PRK13705 plasmid-partitioning 38.6 33 0.00072 36.4 3.8 34 12-45 116-150 (388)
331 PRK12481 2-deoxy-D-gluconate 3 38.5 34 0.00073 33.0 3.5 30 2-37 9-38 (251)
332 COG0061 nadF NAD kinase [Coenz 38.4 53 0.0012 33.3 5.1 35 361-400 54-88 (281)
333 PRK05480 uridine/cytidine kina 38.2 60 0.0013 30.6 5.2 38 2-43 7-44 (209)
334 PRK12829 short chain dehydroge 38.0 40 0.00086 32.2 4.0 33 2-40 12-44 (264)
335 PRK09072 short chain dehydroge 37.9 37 0.00081 32.7 3.8 33 2-40 6-38 (263)
336 KOG4180 Predicted kinase [Gene 37.8 41 0.00089 35.4 4.1 61 311-397 75-135 (395)
337 COG0771 MurD UDP-N-acetylmuram 37.7 1.4E+02 0.0031 32.6 8.4 83 297-396 7-98 (448)
338 cd01451 vWA_Magnesium_chelatas 36.9 60 0.0013 29.9 4.9 60 364-423 101-172 (178)
339 COG3640 CooC CO dehydrogenase 36.9 42 0.0009 33.9 3.9 36 4-41 3-39 (255)
340 PF12846 AAA_10: AAA-like doma 36.9 58 0.0013 31.5 5.0 35 3-41 3-37 (304)
341 PRK13973 thymidylate kinase; P 36.5 72 0.0016 30.5 5.5 35 2-38 4-38 (213)
342 PRK05786 fabG 3-ketoacyl-(acyl 36.5 42 0.0009 31.5 3.8 29 2-36 6-34 (238)
343 TIGR00073 hypB hydrogenase acc 36.4 1.9E+02 0.0041 27.3 8.3 54 12-67 31-84 (207)
344 PRK08703 short chain dehydroge 36.3 43 0.00094 31.7 3.9 30 2-37 7-36 (239)
345 TIGR03325 BphB_TodD cis-2,3-di 36.3 41 0.00089 32.4 3.8 30 2-37 6-35 (262)
346 PRK01390 murD UDP-N-acetylmura 36.2 71 0.0015 34.1 5.9 62 2-73 115-178 (460)
347 PRK12727 flagellar biosynthesi 36.1 54 0.0012 36.8 5.0 39 2-42 351-391 (559)
348 PF09419 PGP_phosphatase: Mito 36.1 88 0.0019 29.6 5.8 51 320-376 36-91 (168)
349 cd01425 RPS2 Ribosomal protein 36.0 3.8E+02 0.0083 25.5 10.3 32 361-398 126-157 (193)
350 PRK00698 tmk thymidylate kinas 35.9 68 0.0015 29.6 5.1 34 2-37 4-37 (205)
351 TIGR00455 apsK adenylylsulfate 35.6 68 0.0015 29.6 5.0 35 2-38 19-53 (184)
352 PF13450 NAD_binding_8: NAD(P) 35.6 52 0.0011 25.9 3.6 38 14-54 2-39 (68)
353 PRK05876 short chain dehydroge 35.4 43 0.00093 33.0 3.8 30 2-37 7-36 (275)
354 PF08497 Radical_SAM_N: Radica 35.2 32 0.00069 35.5 2.8 65 3-75 19-88 (302)
355 PRK05579 bifunctional phosphop 35.2 48 0.001 35.5 4.3 37 2-38 189-235 (399)
356 PRK08416 7-alpha-hydroxysteroi 35.0 41 0.00089 32.5 3.5 29 2-36 9-37 (260)
357 TIGR01500 sepiapter_red sepiap 34.8 50 0.0011 31.8 4.1 34 3-38 2-35 (256)
358 PLN02989 cinnamyl-alcohol dehy 34.8 60 0.0013 32.4 4.8 34 2-41 6-39 (325)
359 PRK08339 short chain dehydroge 34.8 44 0.00096 32.5 3.8 30 2-37 9-38 (263)
360 TIGR01499 folC folylpolyglutam 34.7 52 0.0011 34.4 4.5 33 2-38 19-51 (397)
361 PRK06197 short chain dehydroge 34.6 42 0.0009 33.4 3.6 30 2-37 17-46 (306)
362 PRK05642 DNA replication initi 34.6 29 0.00062 33.9 2.4 60 3-64 47-106 (234)
363 TIGR02667 moaB_proteo molybden 34.6 3.4E+02 0.0073 25.2 9.4 69 312-393 23-94 (163)
364 PRK00889 adenylylsulfate kinas 34.6 80 0.0017 28.8 5.2 38 2-41 5-42 (175)
365 PRK06505 enoyl-(acyl carrier p 34.3 48 0.001 32.6 4.0 31 2-37 8-39 (271)
366 PRK05993 short chain dehydroge 34.2 45 0.00097 32.7 3.7 33 2-40 5-37 (277)
367 PRK08690 enoyl-(acyl carrier p 34.2 46 0.001 32.4 3.8 30 2-36 7-37 (261)
368 PRK14528 adenylate kinase; Pro 33.8 45 0.00099 31.3 3.5 25 1-27 1-25 (186)
369 PRK09620 hypothetical protein; 33.7 57 0.0012 32.1 4.4 36 2-37 4-49 (229)
370 PRK01185 ppnK inorganic polyph 33.7 82 0.0018 32.0 5.5 31 362-400 52-82 (271)
371 PRK05986 cob(I)alamin adenolsy 33.6 44 0.00095 32.4 3.4 28 13-40 30-59 (191)
372 PRK07024 short chain dehydroge 33.6 46 0.00099 32.0 3.6 33 1-39 2-34 (257)
373 cd02019 NK Nucleoside/nucleoti 33.4 83 0.0018 24.6 4.5 31 4-38 2-32 (69)
374 PRK13360 omega amino acid--pyr 33.0 92 0.002 33.5 6.1 37 139-178 215-253 (442)
375 PRK05717 oxidoreductase; Valid 32.9 48 0.001 31.8 3.6 30 2-37 11-40 (255)
376 PF03308 ArgK: ArgK protein; 32.9 53 0.0011 33.5 4.0 54 4-79 32-85 (266)
377 PRK10310 PTS system galactitol 32.8 89 0.0019 26.4 4.8 38 2-42 4-42 (94)
378 cd05014 SIS_Kpsf KpsF-like pro 32.7 2.3E+02 0.0051 24.1 7.6 38 361-400 46-83 (128)
379 PLN02624 ornithine-delta-amino 32.6 1.1E+02 0.0024 33.1 6.7 32 140-171 225-258 (474)
380 cd01826 acyloxyacyl_hydrolase_ 32.6 77 0.0017 33.0 5.1 73 89-173 75-169 (305)
381 PRK06463 fabG 3-ketoacyl-(acyl 32.5 53 0.0011 31.5 3.8 29 2-36 8-36 (255)
382 PRK05866 short chain dehydroge 32.5 46 0.00099 33.2 3.5 30 2-37 41-70 (293)
383 PF13670 PepSY_2: Peptidase pr 32.4 53 0.0011 26.8 3.3 45 16-71 27-72 (83)
384 PRK10461 thiamine biosynthesis 32.1 36 0.00079 35.6 2.8 79 11-101 183-276 (350)
385 PRK07831 short chain dehydroge 32.0 58 0.0013 31.3 4.0 31 2-37 18-48 (262)
386 PRK06938 diaminobutyrate--2-ox 32.0 2.1E+02 0.0045 31.1 8.7 63 140-216 232-298 (464)
387 PRK12859 3-ketoacyl-(acyl-carr 31.7 58 0.0013 31.4 4.0 31 2-37 7-38 (256)
388 smart00864 Tubulin Tubulin/Fts 31.6 1E+02 0.0022 29.1 5.5 107 101-224 52-158 (192)
389 COG5182 CUS1 Splicing factor 3 31.5 44 0.00095 35.2 3.1 77 181-265 114-210 (429)
390 PRK06523 short chain dehydroge 31.3 65 0.0014 30.8 4.2 33 2-40 10-42 (260)
391 PRK02231 ppnK inorganic polyph 31.3 40 0.00087 34.2 2.9 35 361-400 41-75 (272)
392 PTZ00451 dephospho-CoA kinase; 31.2 60 0.0013 32.4 4.0 28 1-34 1-29 (244)
393 cd06309 PBP1_YtfQ_like Peripla 31.2 2.5E+02 0.0054 26.8 8.3 33 361-397 54-86 (273)
394 TIGR02990 ectoine_eutA ectoine 31.1 1.1E+02 0.0025 30.3 6.0 98 298-408 121-220 (239)
395 PF01695 IstB_IS21: IstB-like 30.8 67 0.0014 30.2 4.1 39 3-43 49-87 (178)
396 PRK07063 short chain dehydroge 30.7 59 0.0013 31.2 3.9 30 2-37 8-37 (260)
397 TIGR01360 aden_kin_iso1 adenyl 30.7 65 0.0014 29.3 3.9 25 1-27 3-27 (188)
398 PRK08017 oxidoreductase; Provi 30.6 61 0.0013 30.8 3.9 32 2-39 3-34 (256)
399 PRK08340 glucose-1-dehydrogena 30.6 51 0.0011 31.7 3.4 29 3-37 2-30 (259)
400 cd06320 PBP1_allose_binding Pe 30.4 2.6E+02 0.0056 26.6 8.3 33 361-397 56-88 (275)
401 PRK00081 coaE dephospho-CoA ki 30.3 71 0.0015 30.2 4.2 28 1-34 2-29 (194)
402 COG0451 WcaG Nucleoside-diphos 30.1 65 0.0014 31.4 4.1 32 4-41 3-34 (314)
403 PRK07413 hypothetical protein; 30.1 45 0.00098 35.7 3.1 28 12-39 26-61 (382)
404 PRK07806 short chain dehydroge 29.9 65 0.0014 30.5 3.9 29 2-36 7-35 (248)
405 PF03668 ATP_bind_2: P-loop AT 29.8 60 0.0013 33.4 3.8 88 240-329 181-276 (284)
406 PRK07985 oxidoreductase; Provi 29.8 62 0.0013 32.3 3.9 30 2-37 50-79 (294)
407 PF13407 Peripla_BP_4: Peripla 29.7 2.4E+02 0.0051 26.6 7.8 36 361-400 54-89 (257)
408 PRK10017 colanic acid biosynth 29.7 3.4E+02 0.0073 29.3 9.7 31 298-329 1-36 (426)
409 cd06267 PBP1_LacI_sugar_bindin 29.6 2.2E+02 0.0047 26.4 7.4 30 362-397 55-84 (264)
410 PRK10846 bifunctional folylpol 29.4 66 0.0014 34.1 4.3 32 2-37 50-81 (416)
411 PRK09186 flagellin modificatio 29.2 66 0.0014 30.5 3.9 31 2-38 5-35 (256)
412 PRK12937 short chain dehydroge 29.2 62 0.0013 30.4 3.6 29 2-36 6-34 (245)
413 PRK09242 tropinone reductase; 29.2 61 0.0013 31.0 3.7 30 2-37 10-39 (257)
414 PRK08309 short chain dehydroge 29.1 91 0.002 29.3 4.7 27 4-37 3-29 (177)
415 PRK07814 short chain dehydroge 29.0 63 0.0014 31.2 3.8 34 2-41 11-44 (263)
416 PRK06603 enoyl-(acyl carrier p 29.0 64 0.0014 31.4 3.8 30 2-36 9-39 (260)
417 PRK06182 short chain dehydroge 29.0 67 0.0014 31.2 3.9 31 2-38 4-34 (273)
418 PF03698 UPF0180: Uncharacteri 28.8 55 0.0012 27.5 2.8 35 312-370 9-43 (80)
419 TIGR01419 nitro_reg_IIA PTS II 28.6 22 0.00048 31.6 0.5 44 77-121 26-70 (145)
420 PRK06720 hypothetical protein; 28.6 67 0.0014 29.9 3.7 30 2-37 17-46 (169)
421 cd01832 SGNH_hydrolase_like_1 28.2 1.2E+02 0.0026 27.3 5.3 46 138-185 66-116 (185)
422 PRK06761 hypothetical protein; 28.2 66 0.0014 32.9 3.8 33 2-36 4-36 (282)
423 COG1660 Predicted P-loop-conta 28.2 49 0.0011 33.9 2.8 23 151-173 57-79 (286)
424 PRK00421 murC UDP-N-acetylmura 28.2 1.8E+02 0.0039 31.1 7.4 81 298-396 8-95 (461)
425 cd06282 PBP1_GntR_like_2 Ligan 28.1 3.5E+02 0.0077 25.3 8.7 32 361-397 54-85 (266)
426 PRK05599 hypothetical protein; 28.0 54 0.0012 31.5 3.1 29 2-37 1-29 (246)
427 PRK02645 ppnK inorganic polyph 27.9 1.6E+02 0.0034 30.3 6.5 82 299-399 5-89 (305)
428 PRK06200 2,3-dihydroxy-2,3-dih 27.7 67 0.0015 30.9 3.7 31 2-38 7-37 (263)
429 cd01822 Lysophospholipase_L1_l 27.7 2.6E+02 0.0056 24.8 7.3 44 119-170 50-97 (177)
430 PRK08643 acetoin reductase; Va 27.7 76 0.0017 30.2 4.0 30 2-37 3-32 (256)
431 PRK12743 oxidoreductase; Provi 27.7 72 0.0016 30.6 3.9 30 1-36 2-31 (256)
432 PRK08993 2-deoxy-D-gluconate 3 27.7 67 0.0014 30.8 3.6 30 2-37 11-40 (253)
433 PF02012 BNR: BNR/Asp-box repe 27.7 37 0.0008 18.8 1.0 9 59-67 1-9 (12)
434 PLN00198 anthocyanidin reducta 27.6 98 0.0021 31.2 5.0 34 2-41 10-43 (338)
435 TIGR00521 coaBC_dfp phosphopan 27.6 77 0.0017 33.8 4.3 37 2-38 186-232 (390)
436 PRK08267 short chain dehydroge 27.5 90 0.002 29.9 4.5 31 1-37 1-31 (260)
437 PRK07677 short chain dehydroge 27.5 74 0.0016 30.4 3.9 31 2-38 2-32 (252)
438 TIGR03575 selen_PSTK_euk L-ser 27.2 90 0.002 32.8 4.7 39 4-44 2-41 (340)
439 PRK06732 phosphopantothenate-- 27.2 87 0.0019 30.7 4.4 35 4-38 3-47 (229)
440 COG0300 DltE Short-chain dehyd 27.2 72 0.0016 32.4 3.8 32 1-38 6-37 (265)
441 PLN02780 ketoreductase/ oxidor 27.0 60 0.0013 33.1 3.3 32 2-39 54-85 (320)
442 smart00852 MoCF_biosynth Proba 27.0 97 0.0021 27.3 4.3 72 312-396 19-91 (135)
443 PRK01368 murD UDP-N-acetylmura 26.9 2.6E+02 0.0056 30.2 8.3 81 293-396 2-92 (454)
444 PRK08278 short chain dehydroge 26.9 68 0.0015 31.4 3.6 30 2-37 7-36 (273)
445 PF01408 GFO_IDH_MocA: Oxidore 26.8 1.1E+02 0.0025 25.6 4.6 38 353-395 51-90 (120)
446 PRK09221 beta alanine--pyruvat 26.8 1.4E+02 0.0031 32.1 6.3 37 139-178 218-256 (445)
447 COG1834 N-Dimethylarginine dim 26.8 97 0.0021 31.6 4.7 93 64-171 51-152 (267)
448 PRK04690 murD UDP-N-acetylmura 26.7 2.4E+02 0.0051 30.5 8.0 82 299-396 10-98 (468)
449 PRK06125 short chain dehydroge 26.5 76 0.0016 30.4 3.8 32 2-39 8-39 (259)
450 PRK06997 enoyl-(acyl carrier p 26.5 79 0.0017 30.8 4.0 30 2-36 7-37 (260)
451 PRK07023 short chain dehydroge 26.4 91 0.002 29.5 4.3 32 1-38 1-32 (243)
452 PRK09730 putative NAD(P)-bindi 26.3 93 0.002 29.2 4.3 30 1-36 1-30 (247)
453 PRK07478 short chain dehydroge 26.3 76 0.0017 30.3 3.8 30 2-37 7-36 (254)
454 PRK06057 short chain dehydroge 26.3 76 0.0016 30.4 3.7 30 2-37 8-37 (255)
455 PRK09417 mogA molybdenum cofac 26.3 1.5E+02 0.0032 28.7 5.6 52 90-151 24-77 (193)
456 cd04728 ThiG Thiazole synthase 26.2 2.7E+02 0.0058 28.2 7.6 67 312-389 21-87 (248)
457 PRK07453 protochlorophyllide o 26.1 72 0.0016 32.0 3.7 30 2-37 7-36 (322)
458 PRK00208 thiG thiazole synthas 26.1 2.8E+02 0.006 28.2 7.6 66 312-389 22-87 (250)
459 PRK03369 murD UDP-N-acetylmura 25.9 2.9E+02 0.0063 30.0 8.5 76 299-396 14-99 (488)
460 TIGR00235 udk uridine kinase. 25.8 94 0.002 29.4 4.2 39 2-44 7-45 (207)
461 PRK12825 fabG 3-ketoacyl-(acyl 25.7 99 0.0022 28.8 4.4 30 1-36 6-35 (249)
462 PRK12823 benD 1,6-dihydroxycyc 25.7 85 0.0018 30.0 4.0 30 2-37 9-38 (260)
463 PRK06128 oxidoreductase; Provi 25.7 85 0.0018 31.2 4.1 30 2-37 56-85 (300)
464 PRK14491 putative bifunctional 25.7 1.1E+02 0.0023 34.6 5.2 39 1-41 10-48 (597)
465 PRK08594 enoyl-(acyl carrier p 25.6 86 0.0019 30.5 4.0 31 2-37 8-39 (257)
466 PRK07062 short chain dehydroge 25.6 82 0.0018 30.3 3.8 33 2-40 9-41 (265)
467 cd01120 RecA-like_NTPases RecA 25.5 1.4E+02 0.003 25.7 4.9 38 4-43 2-39 (165)
468 PRK10355 xylF D-xylose transpo 25.4 6E+02 0.013 25.7 10.3 82 296-397 24-112 (330)
469 PF01266 DAO: FAD dependent ox 25.3 64 0.0014 31.8 3.1 29 14-42 5-33 (358)
470 COG2403 Predicted GTPase [Gene 25.3 73 0.0016 34.3 3.5 31 9-39 133-163 (449)
471 TIGR01289 LPOR light-dependent 25.2 76 0.0017 32.0 3.7 29 2-36 4-33 (314)
472 PHA02754 hypothetical protein; 25.1 63 0.0014 25.7 2.3 28 158-186 15-42 (67)
473 PRK07413 hypothetical protein; 25.1 53 0.0012 35.1 2.6 28 12-39 207-242 (382)
474 PRK06217 hypothetical protein; 25.0 75 0.0016 29.4 3.3 25 1-27 1-25 (183)
475 TIGR03574 selen_PSTK L-seryl-t 25.0 1E+02 0.0022 30.0 4.5 34 4-39 2-35 (249)
476 cd01575 PBP1_GntR Ligand-bindi 24.9 4.6E+02 0.0099 24.5 8.8 31 361-397 54-84 (268)
477 KOG1015 Transcription regulato 24.8 82 0.0018 37.8 4.1 107 107-222 707-833 (1567)
478 COG0540 PyrB Aspartate carbamo 24.7 5.6E+02 0.012 26.9 9.7 104 192-329 86-189 (316)
479 TIGR01963 PHB_DH 3-hydroxybuty 24.7 1E+02 0.0022 29.1 4.3 32 1-38 1-32 (255)
480 TIGR00259 thylakoid_BtpA membr 24.7 3.9E+02 0.0085 27.1 8.5 38 362-400 171-212 (257)
481 cd01844 SGNH_hydrolase_like_6 24.7 71 0.0015 29.1 3.1 47 138-186 56-105 (177)
482 COG0521 MoaB Molybdopterin bio 24.6 81 0.0018 30.1 3.4 81 312-408 28-111 (169)
483 TIGR01472 gmd GDP-mannose 4,6- 24.6 93 0.002 31.5 4.2 32 2-39 1-32 (343)
484 PLN02686 cinnamoyl-CoA reducta 24.6 1.1E+02 0.0023 31.8 4.7 31 1-37 53-83 (367)
485 PRK12747 short chain dehydroge 24.6 89 0.0019 29.8 3.8 29 2-36 5-33 (252)
486 PRK07775 short chain dehydroge 24.5 86 0.0019 30.6 3.8 30 2-37 11-40 (274)
487 PRK08415 enoyl-(acyl carrier p 24.5 93 0.002 30.7 4.1 31 2-37 6-37 (274)
488 TIGR01005 eps_transp_fam exopo 24.4 1E+02 0.0023 35.2 5.0 40 2-42 547-586 (754)
489 cd00158 RHOD Rhodanese Homolog 24.4 1.3E+02 0.0028 23.3 4.2 25 2-33 52-76 (89)
490 cd06316 PBP1_ABC_sugar_binding 24.4 3.6E+02 0.0078 26.2 8.2 33 361-397 55-87 (294)
491 PRK03459 rnpA ribonuclease P; 24.4 3.7E+02 0.008 24.0 7.5 85 82-170 2-112 (122)
492 PRK06196 oxidoreductase; Provi 24.3 83 0.0018 31.5 3.7 31 2-38 27-57 (315)
493 PLN02986 cinnamyl-alcohol dehy 24.1 1E+02 0.0022 30.7 4.4 30 2-37 6-35 (322)
494 KOG0635 Adenosine 5'-phosphosu 24.1 82 0.0018 30.1 3.3 30 3-34 33-62 (207)
495 cd04501 SGNH_hydrolase_like_4 24.1 3.5E+02 0.0076 24.3 7.6 46 137-184 57-106 (183)
496 cd01828 sialate_O-acetylestera 24.0 2E+02 0.0044 25.6 5.9 15 138-154 47-61 (169)
497 PRK02496 adk adenylate kinase; 24.0 92 0.002 28.6 3.7 25 1-27 1-25 (184)
498 PRK14734 coaE dephospho-CoA ki 23.9 1.1E+02 0.0023 29.2 4.3 28 1-34 1-28 (200)
499 PRK06935 2-deoxy-D-gluconate 3 23.9 84 0.0018 30.1 3.6 30 2-37 16-45 (258)
500 TIGR02746 TraC-F-type type-IV 23.9 1E+02 0.0022 35.4 4.7 34 4-41 433-466 (797)
No 1
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.3e-185 Score=1422.32 Aligned_cols=441 Identities=57% Similarity=0.938 Sum_probs=426.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~ 80 (466)
||||||||||+|||||||+|||||+|||+|||+||++|||||||||||||||||||||||||||+||||||||||||+|+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~ 80 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDV 80 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 012331 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (466)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~ 160 (466)
+||++||+||||||++||+|||+|||||+|||||||||||||+||+++|+ .. +||||||||||||||||+|||
T Consensus 81 ~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~------~~-~DvvivEIGGTVGDIEslpFl 153 (533)
T COG0504 81 NLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAAD------ST-ADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcC------CC-CCEEEEEeCCceecccccHHH
Confidence 99999999999999999999999999999999999999999999999995 22 999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 012331 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (466)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~ 240 (466)
||+||||.++|++|++|||+|||||++++||+||||||||||+|||+|||||++||||+.+++.+.|+||||||+|++++
T Consensus 154 EAiRQ~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~ 233 (533)
T COG0504 154 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHhhhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEeccCCchhhHHHHHHHH
Q 012331 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (466)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~g~~Day~SI~~aL 320 (466)
||+++|++|+|++|+.|++||+.+.++++|+|+ .+.+++++|+++++++.++.++++||+||||+.+.|+|.|+.+||
T Consensus 234 Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~--~~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL 311 (533)
T COG0504 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNLN--APEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred eEecccHHHHHHhHHHHHHcchHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHHHHHHHH
Confidence 999999999999999999999999999999997 467799999999999999887899999999999999999999999
Q ss_pred HHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHcc-CCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehH
Q 012331 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (466)
Q Consensus 321 ~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~-~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICL 399 (466)
+|+|++..+++++.||++++++.++. +.+. .+|||++|||||.||++|+|.|++|||||++|+|||||
T Consensus 312 ~hag~~~~~~v~i~wIdse~le~~~~-----------~~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGICl 380 (533)
T COG0504 312 KHAGIALGVKVNIKWIDSEDLEEENA-----------AELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICL 380 (533)
T ss_pred HhhhhhcCCceeeEEEccccccccch-----------hhhhhcCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEch
Confidence 99999999999999999999876532 1222 29999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccCCCCcccCCCCCCCeEEeCCCC-CCCCCccccccCCcceEEecCCc
Q 012331 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYFQIKDC 461 (466)
Q Consensus 400 GmQllaia~Gr~v~klk~a~s~Ef~~~~~~pVi~l~~e~-~~~~~GgtmRLG~~~~~~~~~~~ 461 (466)
|||++++||||||+||++|||+||+|++++||+++|||+ +..+||||||||+|+|.|++||-
T Consensus 381 GmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~gT~ 443 (533)
T COG0504 381 GMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPGTL 443 (533)
T ss_pred hHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCCcH
Confidence 999999999999999999999999999999999999997 46779999999999999999973
No 2
>PLN02327 CTP synthase
Probab=100.00 E-value=6.1e-185 Score=1456.21 Aligned_cols=460 Identities=85% Similarity=1.352 Sum_probs=448.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~ 80 (466)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 012331 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (466)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~ 160 (466)
+||++||+||||||++||+|||+|+|||||||||||||||||+||+++|++|||++..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeI~~~i~~~~~~~~~~~~~~~dv~i~EiGGTVGDiEs~pfl 160 (557)
T PLN02327 81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (557)
T ss_pred ccccccCCCcHHHHHHHHHHhhcCCcCCCeeEECCCcHHHHHHHHHHhccCCcccCCCCCCEEEEEeCceeecccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 012331 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (466)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~ 240 (466)
||+||||+++|++|||||||||||||+++||+||||||||||+|||.|||||+|||||+.+++++.|+||||||+|++++
T Consensus 161 EA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKPtQhsvk~Lr~~Gi~pd~l~~Rs~~~l~~~~~~Kia~fc~v~~~~ 240 (557)
T PLN02327 161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240 (557)
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEeccCCchhhHHHHHHHH
Q 012331 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (466)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~g~~Day~SI~~aL 320 (466)
||+++|++++|+||++|++||+++.|+++|+|+...+.+++.+|+++++++.+++++++||+||||+++.|+|.||.+||
T Consensus 241 Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~Si~eAL 320 (557)
T PLN02327 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320 (557)
T ss_pred EEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHHHHHHH
Confidence 99999999999999999999999999999999721245679999999999998888999999999999999999999999
Q ss_pred HHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHH
Q 012331 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (466)
Q Consensus 321 ~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLG 400 (466)
+|+|++..+++++.||+++++++.+..++|++|+.+|+.|.++|||++|||||+++.+|++.++++++++++|+||||+|
T Consensus 321 ~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 321 LHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400 (557)
T ss_pred HHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999999987766678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeEEeCCCCCCCCCccccccCCcceEEe-cCC
Q 012331 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ-IKD 460 (466)
Q Consensus 401 mQllaia~Gr~v~klk~a~s~Ef~~~~~~pVi~l~~e~~~~~~GgtmRLG~~~~~~~-~~~ 460 (466)
||+|++|||||++||++|||+||+|++++|||++||+++..+||||||||+|+|.+. +||
T Consensus 401 mQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~S 461 (557)
T PLN02327 401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDC 461 (557)
T ss_pred HHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCCC
Confidence 999999999999999999999999999999999999988889999999999999998 665
No 3
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.8e-183 Score=1387.06 Aligned_cols=466 Identities=72% Similarity=1.166 Sum_probs=456.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~ 80 (466)
||||+|||||+||+||||+|||+|.|||++|++||.||||||||+|||||||||||||||+|||+|+||||||||||||+
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYERfldi 80 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHhcCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 012331 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (466)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~ 160 (466)
+||++|||||||||++||+|||+||||||||||||||||+|++||+++|.+|||+++.+|||||||+|||||||||+||+
T Consensus 81 ~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiEs~pfv 160 (585)
T KOG2387|consen 81 TLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFV 160 (585)
T ss_pred eeeccCCcccchHHHHHHhhhhccccccceeEeccchhHHHHHHHHHHhcCCcCCCCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 012331 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (466)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~ 240 (466)
||+||||+++|++|||+|||||||.+.+.|||||||||||||+||+.|+.||+++|||..++..+.|+|||.||+|+.++
T Consensus 161 eAl~qFq~~vg~~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FChV~~eq 240 (585)
T KOG2387|consen 161 EALRQFQFKVGRENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGPEQ 240 (585)
T ss_pred HHHHhheecccCCcEEEEEEEEEEeccccccccCcchHHHHHHHHhcCCCcceEEEccCCCCCHHHHHHHhhhcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCC-hhhHHHHHHHHhhhcCCCCCeEEEEEeccCCchhhHHHHHHH
Q 012331 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKA 319 (466)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~-~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~g~~Day~SI~~a 319 (466)
|++++||+++|++|+.|++||+.+++-++|+|+.... .+.+..|..++++..+....++||+||||+++.|+|.|+.+|
T Consensus 241 V~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KA 320 (585)
T KOG2387|consen 241 VVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKA 320 (585)
T ss_pred eeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHH
Confidence 9999999999999999999999999999999975222 368999999999999888899999999999999999999999
Q ss_pred HHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehH
Q 012331 320 LLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (466)
Q Consensus 320 L~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICL 399 (466)
|.|+++++..++++.||++.++|.....++|.+|++||+.|+.+|||++|||||+||++|+|.|++|||||++|+|||||
T Consensus 321 L~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCL 400 (585)
T KOG2387|consen 321 LEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICL 400 (585)
T ss_pred HHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeeh
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccCCCCcccCCCCCCCeEEeCCCCCCCCCccccccCCcceEEecCCcccccC
Q 012331 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKL 466 (466)
Q Consensus 400 GmQllaia~Gr~v~klk~a~s~Ef~~~~~~pVi~l~~e~~~~~~GgtmRLG~~~~~~~~~~~~~~~~ 466 (466)
|||+++||||||+++|++|+|+||+|++++||+.+|||.+..+||||||||.|++.|++++|+++||
T Consensus 401 GmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kL 467 (585)
T KOG2387|consen 401 GMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKL 467 (585)
T ss_pred hhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988875
No 4
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=100.00 E-value=5.1e-176 Score=1385.58 Aligned_cols=442 Identities=59% Similarity=0.957 Sum_probs=426.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~ 80 (466)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~ 80 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 012331 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (466)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~ 160 (466)
+|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~------~~~~d~~i~EiGGTvGDiEs~pf~ 154 (525)
T TIGR00337 81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAK------ISGPDVVIVEIGGTVGDIESLPFL 154 (525)
T ss_pred CCcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcc------cCCCCEEEEEeCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999985 468999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 012331 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (466)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~ 240 (466)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||.|||||+|||||+.+++++.|+||||||+|+.++
T Consensus 155 ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~ 234 (525)
T TIGR00337 155 EAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234 (525)
T ss_pred HHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEeccCCchhhHHHHHHHH
Q 012331 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (466)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~g~~Day~SI~~aL 320 (466)
||+++|++|+|+||++|++||+++.++++|+|+ .+.+++++|.++++++.+++++++||+||||+++.|+|.||.+||
T Consensus 235 vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL 312 (525)
T TIGR00337 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLN--CDEADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEAL 312 (525)
T ss_pred EEEcCCCccHhhhhHHHHHCChHHHHHHHhCCC--CCCCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999997 345679999999999999888899999999999999999999999
Q ss_pred HHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHH
Q 012331 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (466)
Q Consensus 321 ~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLG 400 (466)
.++|++..+++.+.|+++++++..+ .+.|.++|||++|||||+++.+|++.++++++++++|+||||||
T Consensus 313 ~~ag~~~~~~V~~~~i~se~i~~~~-----------~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 313 KHAGAKLDTKVNIKWIDSEDLEEEG-----------AEFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred HhCccccCCEEEEEEecHHHhhhhh-----------hhhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 9999999999999999998764321 13578899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeEEeCCCCC-CCCCccccccCCcceEEecCCc
Q 012331 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDC 461 (466)
Q Consensus 401 mQllaia~Gr~v~klk~a~s~Ef~~~~~~pVi~l~~e~~-~~~~GgtmRLG~~~~~~~~~~~ 461 (466)
||+|++|||||++||++|||+||+++++|||+++|+++. ..+||||||||+++|.+.+||-
T Consensus 382 ~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~gS~ 443 (525)
T TIGR00337 382 MQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPGTL 443 (525)
T ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCCCh
Confidence 999999999999999999999999999999999999975 6899999999999999999963
No 5
>PRK05380 pyrG CTP synthetase; Validated
Probab=100.00 E-value=4.6e-175 Score=1378.67 Aligned_cols=441 Identities=56% Similarity=0.941 Sum_probs=426.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~ 80 (466)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||||||||||||||||||||||+||||||||||||||+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~~ 81 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 012331 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (466)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~ 160 (466)
+|+|+||+||||||++||+|||+|||||||||||||||||||+||+++| .+|||||||||||||||||+||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~--------~~~dv~i~EiGGTvGDiEs~pf~ 153 (533)
T PRK05380 82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC--------CCCCEEEEEeCCccccccccHHH
Confidence 9999999999999999999999999999999999999999999999997 36899999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 012331 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (466)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~ 240 (466)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||.|||||+|||||+.+++++.|+||||||+|+.++
T Consensus 154 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~R~~~~l~~~~~~Kia~fc~v~~~~ 233 (533)
T PRK05380 154 EAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEeccCCchhhHHHHHHHH
Q 012331 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (466)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~g~~Day~SI~~aL 320 (466)
||+++|++|+|+||+.|++||+++.++++|+|+ .+.++++.|+++++++.++.++++||+||||+.+.|||.||.+||
T Consensus 234 vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL 311 (533)
T PRK05380 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGLE--APEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred EEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCC--CCCCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHH
Confidence 999999999999999999999999999999997 356789999999999999888999999999999999999999999
Q ss_pred HHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHH
Q 012331 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (466)
Q Consensus 321 ~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLG 400 (466)
+|+|+++.+++++.|+++++++..+ +++.|.++|||++|||||+++.+|++.++++++++++|+||||+|
T Consensus 312 ~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 312 KHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 9999999999999999999886532 246789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCCcccCCCCCCCeEEeCCCCC-CCCCccccccCCcceEEecCCc
Q 012331 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDC 461 (466)
Q Consensus 401 mQllaia~Gr~v~klk~a~s~Ef~~~~~~pVi~l~~e~~-~~~~GgtmRLG~~~~~~~~~~~ 461 (466)
||+|++||||+++|++++||+||++++++||+++|+++. ..++|||||||+|+|.|++||-
T Consensus 382 mQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~gS~ 443 (533)
T PRK05380 382 MQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPGTL 443 (533)
T ss_pred HHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCCCh
Confidence 999999999999999999999999999999999999864 5689999999999999999973
No 6
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=100.00 E-value=6.1e-142 Score=1036.78 Aligned_cols=276 Identities=65% Similarity=1.078 Sum_probs=236.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~ 80 (466)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYERFLDI 80 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHHHHTS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHH
Q 012331 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (466)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~ 160 (466)
+|+++||+||||||++||+|||+|+|||+|||||||||||||+||+++|+ ..+|||||||||||||||||+|||
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~------~~~~Dv~iiEiGGTVGDIEs~pFl 154 (276)
T PF06418_consen 81 NLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAK------KPEPDVVIIEIGGTVGDIESLPFL 154 (276)
T ss_dssp ---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHC------CCT-SEEEEEEESETTSCCCHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcC------CCCCCEEEEecCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999999996 458999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 012331 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (466)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~ 240 (466)
||+||||+++|++|+||||||||||++++||+||||||||||+|||.|||||+|||||+.+++++.|+|||+||+|++++
T Consensus 155 EAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~V~~e~ 234 (276)
T PF06418_consen 155 EAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCNVPPEN 234 (276)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCTS-GGG
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhHHHH
Q 012331 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEW 284 (466)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l~~W 284 (466)
||+++|++++|+||++|++||+++.++++|+|+ .+.+++++|
T Consensus 235 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~L~--~~~~dl~~W 276 (276)
T PF06418_consen 235 VISAPDVSSIYEVPLLLEEQGLDEYILKRLNLE--KKEPDLSEW 276 (276)
T ss_dssp EEEEE--SSCCHHHHHHHHTTHHHHHHHHTT----------HHH
T ss_pred EEEcCCcccHHHHHHHHHHcCcHHHHHHHcCcC--CCCCCcccC
Confidence 999999999999999999999999999999998 467799999
No 7
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=100.00 E-value=2.5e-133 Score=969.76 Aligned_cols=255 Identities=62% Similarity=1.031 Sum_probs=252.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~~ 81 (466)
|||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||++
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 012331 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (466)
Q Consensus 82 l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~e 161 (466)
|+++||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..++||||||||||||||||+||+|
T Consensus 81 l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~------~~~~dv~i~EiGGTvGDiEs~pf~E 154 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAE------KSGADVVIVEIGGTVGDIESLPFLE 154 (255)
T ss_pred CcCccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhc------cCCCCEEEEEeCCccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999995 4689999999999999999999999
Q ss_pred HHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCe
Q 012331 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241 (466)
Q Consensus 162 a~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~V 241 (466)
|+||||+++|++|+||||||||||++++||+|||||||||+.||+.||+||++|||++.+++++.++|||+||+|+.++|
T Consensus 155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFcnVpve~V 234 (255)
T cd03113 155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234 (255)
T ss_pred HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccchhhHHHHHcch
Q 012331 242 ITLYDVPNIWHIPLLLRDQKA 262 (466)
Q Consensus 242 i~i~dVdTrY~lpl~LreqG~ 262 (466)
+..+|++++|++|+.|++||+
T Consensus 235 I~~~d~~~iY~vPl~l~~q~~ 255 (255)
T cd03113 235 ISAPDVDNIYEVPLLLEQQGL 255 (255)
T ss_pred eecCCCcchhhccHHHHhCcC
Confidence 999999999999999999985
No 8
>PRK06186 hypothetical protein; Validated
Probab=100.00 E-value=3.2e-38 Score=306.18 Aligned_cols=144 Identities=33% Similarity=0.476 Sum_probs=131.9
Q ss_pred CeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCC
Q 012331 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (466)
Q Consensus 297 ~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg 376 (466)
+++||+||||+.+.|+|.||.+||+|+|+...+++++.||+++++++. ..|+++|||+||||||.||
T Consensus 1 ~v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg 67 (229)
T PRK06186 1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRN 67 (229)
T ss_pred CcEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCccc
Confidence 379999999999999999999999999999999999999999988642 3588999999999999999
Q ss_pred chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCcccCCCCCCCeEEeCCCCCCCCCccccccCCcceEE
Q 012331 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (466)
Q Consensus 377 ~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~Ef~~~~~~pVi~l~~e~~~~~~GgtmRLG~~~~~~ 456 (466)
++|++.+|+|||++++|+||||||||+|++|||||++++++|||+||++++++|||++|+ .....+| ++|.+
T Consensus 68 ~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~-~~~~~~~-------h~v~l 139 (229)
T PRK06186 68 DDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLS-CSLVEKT-------GDIRL 139 (229)
T ss_pred HhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECc-cccccCc-------eEEEE
Confidence 999999999999999999999999999999999999999999999999999999999998 2233333 78899
Q ss_pred ecCCc
Q 012331 457 QIKDC 461 (466)
Q Consensus 457 ~~~~~ 461 (466)
++||-
T Consensus 140 ~~~S~ 144 (229)
T PRK06186 140 RPGSL 144 (229)
T ss_pred CCCCH
Confidence 98873
No 9
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=2.2e-38 Score=319.83 Aligned_cols=205 Identities=17% Similarity=0.232 Sum_probs=171.2
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHcchhhhhHhhcC-CCCCCChhh
Q 012331 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN-LQGTTKEPL 280 (466)
Q Consensus 202 k~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~-l~~~~~~~~ 280 (466)
++.||.++++.++|+|+.+..+||||++.||.+||++++|++|.||||| +|+++||++|+|++++..-. +++......
T Consensus 67 ~d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTR-aLtr~iR~~G~m~~~I~~~~~~~~~~~~~~ 145 (368)
T COG0505 67 EDFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTR-ALTRKIREKGAMKGVIATGPELDPAKLLER 145 (368)
T ss_pred hhccccCceEEEEEEcccccccCccccccCHHHHHHHcCCCceecccHH-HHHHHHHhcCCcceEeecCcccChHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 99999999999999886542 332111112
Q ss_pred HHHH-----HHHHhhhcCC------------CCCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCccc
Q 012331 281 LKEW-----TSRAEICDGL------------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED 343 (466)
Q Consensus 281 l~~W-----~~lv~~v~~~------------~~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~ 343 (466)
.+.| .+++..++.. ....+|+++| | | .+.||++.|..+||.+.| +|++.-
T Consensus 146 ~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~iD-~-G---vK~nIlr~L~~rg~~vtV------VP~~t~-- 212 (368)
T COG0505 146 ARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVID-F-G---VKRNILRELVKRGCRVTV------VPADTS-- 212 (368)
T ss_pred HhhcCCCCcccccceeecCCceeccccccCCCCCcEEEEEE-c-C---ccHHHHHHHHHCCCeEEE------EcCCCC--
Confidence 2334 3455555431 1246999999 7 7 789999999999999988 566431
Q ss_pred ccccCCchhhHHHHHHc-cCCCEEEecCCCCCC-CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCc
Q 012331 344 ATEKENPDAYKAAWKLL-KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (466)
Q Consensus 344 ~~~~~~p~~y~~~~~~L-~~~DGIllPGGfG~r-g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~ 421 (466)
+.+.+ .++|||||||||||| ..+..+..++...+.++|+|||||||||+++|+|++++||||+|++
T Consensus 213 ------------~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFGHrG 280 (368)
T COG0505 213 ------------AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGHRG 280 (368)
T ss_pred ------------HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecccCCCC
Confidence 11333 589999999999998 5678999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCeEEeCCC
Q 012331 422 EFDPNTKNPCVIFMPE 437 (466)
Q Consensus 422 Ef~~~~~~pVi~l~~e 437 (466)
.||||+++.++
T Consensus 281 -----~NhPV~dl~tg 291 (368)
T COG0505 281 -----ANHPVKDLDTG 291 (368)
T ss_pred -----CCcCcccccCC
Confidence 99999999775
No 10
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.97 E-value=9.1e-32 Score=277.13 Aligned_cols=202 Identities=15% Similarity=0.248 Sum_probs=161.8
Q ss_pred HhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhHH
Q 012331 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (466)
Q Consensus 203 ~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l~ 282 (466)
++||.+|++.++|||+.+..|||||++.||.+||++++|++|.+|||| +|+++||++|+|+++|..-..+.......+.
T Consensus 69 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR-~l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 147 (360)
T PRK12564 69 DFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTR-ALTRKLREKGAMKGVIATEDFDAEELLEKAR 147 (360)
T ss_pred ccccCCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHH-HHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999999988653212100111233
Q ss_pred HH-----HHHHhhhcCCC----------CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCccccccc
Q 012331 283 EW-----TSRAEICDGLH----------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK 347 (466)
Q Consensus 283 ~W-----~~lv~~v~~~~----------~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~ 347 (466)
.| .+++..+++.+ ...+|+++| | | .+.|++++|..+|+.+.+ ++.+.. .
T Consensus 148 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~I~viD-~-G---~k~nivr~L~~~G~~v~v------vp~~~~-~---- 211 (360)
T PRK12564 148 AFPGLLGLDLVKEVSTKEPYPWPGPGGELKYKVVAID-F-G---VKRNILRELAERGCRVTV------VPATTT-A---- 211 (360)
T ss_pred cCCCCcccCCcceeCCCCCEECCCCCCCCCCEEEEEe-C-C---cHHHHHHHHHHCCCEEEE------EeCCCC-H----
Confidence 33 45666666421 136899999 6 6 668999999999998876 343311 0
Q ss_pred CCchhhHHHHHHc--cCCCEEEecCCCCCC-CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCcccC
Q 012331 348 ENPDAYKAAWKLL--KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 424 (466)
Q Consensus 348 ~~p~~y~~~~~~L--~~~DGIllPGGfG~r-g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~Ef~ 424 (466)
+++ .++||||||||||++ .....++.++++.++++|+||||||||+|++++|+++++++++|+.
T Consensus 212 ----------~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~~gh~G--- 278 (360)
T PRK12564 212 ----------EEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKFGHRG--- 278 (360)
T ss_pred ----------HHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccCCCccC---
Confidence 122 269999999999997 4466788999999889999999999999999999999999999876
Q ss_pred CCCCCCeEEeCC
Q 012331 425 PNTKNPCVIFMP 436 (466)
Q Consensus 425 ~~~~~pVi~l~~ 436 (466)
.++||.....
T Consensus 279 --~~~pv~~~~~ 288 (360)
T PRK12564 279 --ANHPVKDLET 288 (360)
T ss_pred --CceeeEECCC
Confidence 5788876543
No 11
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.97 E-value=1.1e-31 Score=276.11 Aligned_cols=202 Identities=16% Similarity=0.257 Sum_probs=159.5
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhH
Q 012331 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (466)
Q Consensus 202 k~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l 281 (466)
.++||.+|++.++|||+.+..|||||++.||.+||++++|++|.||||| +|+++||++|+|+++|..-..+.......+
T Consensus 64 ~~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR-~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~ 142 (358)
T TIGR01368 64 EDAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTR-ALVKKIREKGTMKGVISTEDSNDEELVQKA 142 (358)
T ss_pred hhhcccCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCeeEEEecCCCChHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999 999999999999999865322210001112
Q ss_pred HHH-----HHHHhhhcCCC----------CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccc
Q 012331 282 KEW-----TSRAEICDGLH----------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 346 (466)
Q Consensus 282 ~~W-----~~lv~~v~~~~----------~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~ 346 (466)
..| .+++..+++.+ .+.+|+++| | | .+.|++++|..+|+.+.+ ++.+.-
T Consensus 143 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~i~viD-~-G---~k~ni~~~L~~~G~~v~v------vp~~~~----- 206 (358)
T TIGR01368 143 SVSPDIDGINLVAEVSTKEPYTWGQKRGGKKKRVVVID-F-G---VKQNILRRLVKRGCEVTV------VPYDTD----- 206 (358)
T ss_pred HhCCCCccCCccceeccCCCEEeCCCCCCCccEEEEEe-C-C---cHHHHHHHHHHCCCEEEE------EcCCCC-----
Confidence 222 24566665411 125899999 7 7 668999999999998865 333210
Q ss_pred cCCchhhHHHHHHc--cCCCEEEecCCCCCC-CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCccc
Q 012331 347 KENPDAYKAAWKLL--KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEF 423 (466)
Q Consensus 347 ~~~p~~y~~~~~~L--~~~DGIllPGGfG~r-g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~Ef 423 (466)
+ +.+ ..+||||||||||++ .....++.++++.+ ++|+||||||||+|+.++|+++++++++|++
T Consensus 207 ---~-------~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~~gh~G-- 273 (358)
T TIGR01368 207 ---A-------EEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMKFGHRG-- 273 (358)
T ss_pred ---H-------HHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccCcCcCC--
Confidence 0 222 257999999999998 44667888999887 8999999999999999999999999999987
Q ss_pred CCCCCCCeEEeCC
Q 012331 424 DPNTKNPCVIFMP 436 (466)
Q Consensus 424 ~~~~~~pVi~l~~ 436 (466)
.+|||..+..
T Consensus 274 ---~nhpV~~~~~ 283 (358)
T TIGR01368 274 ---GNHPVKDLIT 283 (358)
T ss_pred ---CceeeEECCC
Confidence 6788876543
No 12
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.97 E-value=1.2e-31 Score=279.01 Aligned_cols=204 Identities=17% Similarity=0.198 Sum_probs=159.7
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHcchhhhhHhhcCC-CCCCChhh
Q 012331 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL-QGTTKEPL 280 (466)
Q Consensus 202 k~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l-~~~~~~~~ 280 (466)
.+.||.++++.++|||+.+..|||||++.||.+||++++|++|.||||| +|+++||++|+|+++|..-+. +.....+.
T Consensus 120 ~d~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTR-aLt~~iR~~G~m~g~i~~~~~~~~~~~~~~ 198 (415)
T PLN02771 120 DDEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTR-AITRRLREDGSLIGVLSTEDSKTDEELLKM 198 (415)
T ss_pred hhhcccCCcEEEEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHH-HHHHHHHhcCCeeEEEecCCCCCHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999 999999999999999965321 10000112
Q ss_pred HHHH----HHHHhhhcCCC---------------------CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEE
Q 012331 281 LKEW----TSRAEICDGLH---------------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDW 335 (466)
Q Consensus 281 l~~W----~~lv~~v~~~~---------------------~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~ 335 (466)
+..| .++++.+++.+ ...+|+++| | | ++++|++.|...|+.+.+
T Consensus 199 ~~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvviD-~-G---~K~nIlr~L~~~G~~v~V------ 267 (415)
T PLN02771 199 SRSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAYD-F-G---IKHNILRRLASYGCKITV------ 267 (415)
T ss_pred HHhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEEC-C-C---hHHHHHHHHHHcCCeEEE------
Confidence 2233 34555555311 115899999 6 7 889999999999998876
Q ss_pred eeCCCcccccccCCchhhHHHHHH-ccCCCEEEecCCCCCCC-chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccc
Q 012331 336 IPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 413 (466)
Q Consensus 336 i~s~~l~~~~~~~~p~~y~~~~~~-L~~~DGIllPGGfG~rg-~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~ 413 (466)
++.+.. +.+. -.++|||||+||||++. ....++.++.+. .++|+||||||||+|+.++|++|.
T Consensus 268 vP~~~~--------------~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~ 332 (415)
T PLN02771 268 VPSTWP--------------ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKTF 332 (415)
T ss_pred ECCCCC--------------HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEE
Confidence 444321 0122 24799999999999984 344566777665 479999999999999999999999
Q ss_pred cccCCCCcccCCCCCCCeEEeCCC
Q 012331 414 NLRDANSTEFDPNTKNPCVIFMPE 437 (466)
Q Consensus 414 klk~a~s~Ef~~~~~~pVi~l~~e 437 (466)
+++++|++ .++||.++.++
T Consensus 333 K~~~Gh~G-----~n~pV~~~~~~ 351 (415)
T PLN02771 333 KMKFGHHG-----GNHPVRNNRTG 351 (415)
T ss_pred ECCCCccc-----ceEEEEECCCC
Confidence 99999987 68898876543
No 13
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.97 E-value=4.8e-31 Score=271.15 Aligned_cols=198 Identities=17% Similarity=0.194 Sum_probs=158.7
Q ss_pred HhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhHH
Q 012331 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (466)
Q Consensus 203 ~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l~ 282 (466)
++||.+||+.++|||+.+..|||||++.||.+||++++|++|.+|||| +|+++||++|+|+++|..-. +. .....+.
T Consensus 67 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR-~lt~~lR~~G~~~~~i~~~~-~~-~~~~~~~ 143 (354)
T PRK12838 67 DYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTR-ALVKHIREKGTMKASITTTD-DA-HAFDQIK 143 (354)
T ss_pred hhcccCceEEEEEECcCCCCCCcccccCCHHHHHHHCCCCcccCCCHH-HHHHHHHHcCCceEEEecCC-cH-HHHHHHH
Confidence 689999999999999999999999999999999999999999999999 99999999999999886422 11 1111222
Q ss_pred HH---HHHHhhhcCCC------CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhh
Q 012331 283 EW---TSRAEICDGLH------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 353 (466)
Q Consensus 283 ~W---~~lv~~v~~~~------~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y 353 (466)
.| .+++..+++.+ ...+|+++| | + .+.+++++|..+|+.+.+ ++.+.- +
T Consensus 144 ~~~~~~~~v~~vs~~~~~~~~~~~~~V~viD-~-G---~k~ni~~~L~~~G~~v~v------vp~~~~--------~--- 201 (354)
T PRK12838 144 ALVLPKNVVAQVSTKEPYTYGNGGKHVALID-F-G---YKKSILRSLSKRGCKVTV------LPYDTS--------L--- 201 (354)
T ss_pred hhhccCCcccEEEcCCCEEeCCCCCEEEEEC-C-C---HHHHHHHHHHHCCCeEEE------EECCCC--------H---
Confidence 22 45666666522 235899999 6 7 789999999999988776 333210 0
Q ss_pred HHHHHHc--cCCCEEEecCCCCCCC-chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCcccCCCCCCC
Q 012331 354 KAAWKLL--KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNP 430 (466)
Q Consensus 354 ~~~~~~L--~~~DGIllPGGfG~rg-~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~Ef~~~~~~p 430 (466)
+.+ .++||||||||||++. ....++.++.+.++ +|+||||||||+|+.++|+++.+++++|++ .+||
T Consensus 202 ----~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~~gh~G-----~~hp 271 (354)
T PRK12838 202 ----EEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLPFGHRG-----ANHP 271 (354)
T ss_pred ----HHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCCCCccC-----CceE
Confidence 122 3799999999999973 34567788888876 999999999999999999999999999976 6788
Q ss_pred eEEeC
Q 012331 431 CVIFM 435 (466)
Q Consensus 431 Vi~l~ 435 (466)
|....
T Consensus 272 V~~~~ 276 (354)
T PRK12838 272 VIDLT 276 (354)
T ss_pred EEECC
Confidence 87643
No 14
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.96 E-value=2.2e-30 Score=268.34 Aligned_cols=195 Identities=17% Similarity=0.231 Sum_probs=152.3
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhH
Q 012331 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (466)
Q Consensus 202 k~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l 281 (466)
.++||.++++.++|||+.+..|||||++.||.+||++++|++|.+|||| +|+++||++|+|+++|.....+.......+
T Consensus 70 ~~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR-~lt~~iR~~G~~~g~i~~~~~~~~~~~~~~ 148 (382)
T CHL00197 70 EDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTR-ALTQHLRRFGTMNGCISNQNLNLSYLRAKI 148 (382)
T ss_pred hhhcccCccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCceEEEEcCCCChHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999 999999999999999965332210001112
Q ss_pred HHH-----HHHHhhhcCC-------C----------------CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEE
Q 012331 282 KEW-----TSRAEICDGL-------H----------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVI 333 (466)
Q Consensus 282 ~~W-----~~lv~~v~~~-------~----------------~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i 333 (466)
..| .+++..+++. . ...+|+++| + + ...||++.|..+|+++.+
T Consensus 149 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD-~-g---~k~ni~~~L~~~G~~v~v---- 219 (382)
T CHL00197 149 KESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVID-F-G---VKYNILRRLKSFGCSITV---- 219 (382)
T ss_pred HcCCCCccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEEE-C-C---cHHHHHHHHHHCCCeEEE----
Confidence 222 3556655431 1 146899999 5 6 557899999999998766
Q ss_pred EEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCC-chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccc
Q 012331 334 DWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (466)
Q Consensus 334 ~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg-~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v 412 (466)
++.+.- .+ .-...++||||++||||++. ....++.++.+.+.++|+||||||||+|+.++|+++
T Consensus 220 --vp~~~~-~~------------~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v 284 (382)
T CHL00197 220 --VPATSP-YQ------------DILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKT 284 (382)
T ss_pred --EcCCCC-HH------------HHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEE
Confidence 333211 00 01123799999999999984 445567778877778999999999999999999999
Q ss_pred ccccCCCCc
Q 012331 413 LNLRDANST 421 (466)
Q Consensus 413 ~klk~a~s~ 421 (466)
.+++++|+.
T Consensus 285 ~k~~~Gh~g 293 (382)
T CHL00197 285 FKLKFGHRG 293 (382)
T ss_pred eccCCCCCC
Confidence 999999876
No 15
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.96 E-value=5e-29 Score=243.50 Aligned_cols=155 Identities=63% Similarity=0.986 Sum_probs=140.5
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCc
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~ 377 (466)
++||+||||+.+.|+|.|+.++|.+++.+....+.+.|+++++++..+ .++.+.++|||++||||+.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~----------~~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEEN----------AEEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccc----------hhhhhccCCEEEECCCCCCcch
Confidence 489999999999999999999999999888888899999987764321 1246788999999999999988
Q ss_pred hhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCcccCCCCCCCeEEeCCCC-CCCCCccccccCCcceEE
Q 012331 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYF 456 (466)
Q Consensus 378 eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~Ef~~~~~~pVi~l~~e~-~~~~~GgtmRLG~~~~~~ 456 (466)
++.+.++++++++++|+||||+|||+|+++||+++++++++|+.|+++..++|++.++++. ...++|||||||++.+.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i 150 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL 150 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999874 578899999999999999
Q ss_pred ecCCcc
Q 012331 457 QIKDCK 462 (466)
Q Consensus 457 ~~~~~~ 462 (466)
++||.+
T Consensus 151 ~~~s~l 156 (235)
T cd01746 151 KPGTLA 156 (235)
T ss_pred CCCChH
Confidence 999853
No 16
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.92 E-value=1.4e-25 Score=244.87 Aligned_cols=223 Identities=15% Similarity=0.174 Sum_probs=174.6
Q ss_pred EEeeeeeeecCCCccccCc-hhhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHH
Q 012331 178 IHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLL 256 (466)
Q Consensus 178 ih~t~vp~~~~~~e~KtKp-tQhsvk~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~Vi~i~dVdTrY~lpl~ 256 (466)
|-+---|.|+.-|-- +++ -+..-+.++|.+||+.++|+++.+.-.|||++..||.+|+.+++|+++.||||| +|+++
T Consensus 50 iLv~T~PlIGNyGVP-~~~~DE~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTR-aLtk~ 127 (1435)
T KOG0370|consen 50 ILVFTYPLIGNYGVP-PDARDEGLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR-ALTKK 127 (1435)
T ss_pred EEEEecccccCCCCC-CCccccccccccccCceEEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHH-HHHHH
Confidence 334445777665554 333 445667789999999999999999999999999999999999999999999999 99999
Q ss_pred HHHcchhhhhHhhcCCCCCCChhhHHHHHHHHhhhcC-------CCCCeEEEEEeccCCchhhHHHHHHHHHHcCCceeE
Q 012331 257 LRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDG-------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329 (466)
Q Consensus 257 LreqG~~~~ii~~l~l~~~~~~~~l~~W~~lv~~v~~-------~~~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v 329 (466)
|||||.|-+-+...+-+..-..|+ -.+++..++. ..+..+|+++|+ | .+.++++.|..+|+++.|
T Consensus 128 lReqGSmLgkl~~e~~~~~~vdpn---~~nLvs~VS~Kep~~y~~Gk~~~I~aiDc--G---~K~N~IRcL~~RGa~vtV 199 (1435)
T KOG0370|consen 128 LREQGSMLGKLSIEKSPVLFVDPN---KRNLVSQVSTKEPKVYGDGKSLRILAIDC--G---LKYNQIRCLVKRGAEVTV 199 (1435)
T ss_pred HHhcCcceeEEEecCCCCcccCCC---cccchhhheeccceEEcCCcccEEEEccc--C---chHHHHHHHHHhCceEEE
Confidence 999999987664332221000000 0345555543 234579999994 7 779999999999999988
Q ss_pred EeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCc-hhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 330 KLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 330 ~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~-eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
++++.. -.-.++||||++||||+|.. ...++.++...+.++|+||||+|||+++.|.
T Consensus 200 ------vPw~~~----------------i~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~Aa 257 (1435)
T KOG0370|consen 200 ------VPWDYP----------------IAKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAA 257 (1435)
T ss_pred ------ecCCcc----------------ccccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhh
Confidence 455321 01128999999999999954 5678889999988899999999999999999
Q ss_pred ccccccccCCCCcccCCCCCCCeEEeCCC
Q 012331 409 ARSVLNLRDANSTEFDPNTKNPCVIFMPE 437 (466)
Q Consensus 409 Gr~v~klk~a~s~Ef~~~~~~pVi~l~~e 437 (466)
|++++|||++|++ .|+|+.+..++
T Consensus 258 GakT~KmKyGNRG-----hNiP~~~~~tG 281 (1435)
T KOG0370|consen 258 GAKTYKMKYGNRG-----HNIPCTCRATG 281 (1435)
T ss_pred CCceEEeeccccC-----CCccceeccCc
Confidence 9999999999998 67787776655
No 17
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.71 E-value=4.2e-17 Score=155.07 Aligned_cols=109 Identities=35% Similarity=0.511 Sum_probs=86.3
Q ss_pred eEEEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecC-C-CCC
Q 012331 298 VRIAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGN 374 (466)
Q Consensus 298 v~IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPG-G-fG~ 374 (466)
++|+||| | .+ |..|+.+||+++|+++.+. .+| +.+.++|+||+|| | |++
T Consensus 2 ~~i~IID-yg~G---NL~Sv~~Aler~G~~~~vs-----------------~d~-------~~i~~AD~liLPGVGaf~~ 53 (204)
T COG0118 2 MMVAIID-YGSG---NLRSVKKALERLGAEVVVS-----------------RDP-------EEILKADKLILPGVGAFGA 53 (204)
T ss_pred CEEEEEE-cCcc---hHHHHHHHHHHcCCeeEEe-----------------cCH-------HHHhhCCEEEecCCCCHHH
Confidence 4799999 8 56 9999999999999888763 233 6788999999999 4 444
Q ss_pred C----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCcccCCC-C----CCCeEEeCCC-CCCCCCc
Q 012331 375 R----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-T----KNPCVIFMPE-GSKTHMG 444 (466)
Q Consensus 375 r----g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~Ef~~~-~----~~pVi~l~~e-~~~~~~G 444 (466)
. ...|.++.++.+.+.++|+||||||||+|. ..|+|.+.. + +..|+.+-++ .++||||
T Consensus 54 am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf------------e~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMG 121 (204)
T COG0118 54 AMANLRERGLIEAIKEAVESGKPFLGICLGMQLLF------------ERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMG 121 (204)
T ss_pred HHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh------------hcccccCCCCCcceecceEEEcCCCCCCCCccc
Confidence 1 123789999998889999999999999999 777777542 2 4566666555 4789999
Q ss_pred cc
Q 012331 445 GT 446 (466)
Q Consensus 445 gt 446 (466)
|+
T Consensus 122 WN 123 (204)
T COG0118 122 WN 123 (204)
T ss_pred cc
Confidence 96
No 18
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.53 E-value=3.2e-14 Score=134.50 Aligned_cols=98 Identities=17% Similarity=0.272 Sum_probs=72.5
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc--cCCCEEEecCCCCCCCc
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRGV 377 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIllPGGfG~rg~ 377 (466)
|.+||.|+.+. .++.+.|+..|+++.+ ++.+++.. +.+ .++|+||++||||++..
T Consensus 2 il~idn~Dsft---~nl~~~l~~~g~~v~v------~~~~~~~~--------------~~~~~~~~d~iils~GPg~p~~ 58 (187)
T PRK08007 2 ILLIDNYDSFT---WNLYQYFCELGADVLV------KRNDALTL--------------ADIDALKPQKIVISPGPCTPDE 58 (187)
T ss_pred EEEEECCCccH---HHHHHHHHHCCCcEEE------EeCCCCCH--------------HHHHhcCCCEEEEcCCCCChHH
Confidence 78899885544 5789999999988766 33332211 222 36999999999999843
Q ss_pred hh-HHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCc
Q 012331 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (466)
Q Consensus 378 eG-~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~ 421 (466)
.+ ..+.++. .+.++|+||||+|||+|+.++|+++.+....+++
T Consensus 59 ~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~~~~g 102 (187)
T PRK08007 59 AGISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG 102 (187)
T ss_pred CCccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCCcccC
Confidence 33 3445554 4578999999999999999999999987765443
No 19
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.52 E-value=7.4e-14 Score=130.61 Aligned_cols=98 Identities=21% Similarity=0.407 Sum_probs=75.1
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-Cch
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GVQ 378 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-g~e 378 (466)
|+++| | | +-.++.++|+.+|+.+.+ ++.+.- . ......++|||++|||++++ ...
T Consensus 1 i~i~d-~-g---~~~~~~~~l~~~G~~~~~------~~~~~~-~------------~~~~~~~~dgiil~GG~~~~~~~~ 56 (178)
T cd01744 1 VVVID-F-G---VKHNILRELLKRGCEVTV------VPYNTD-A------------EEILKLDPDGIFLSNGPGDPALLD 56 (178)
T ss_pred CEEEe-c-C---cHHHHHHHHHHCCCeEEE------EECCCC-H------------HHHhhcCCCEEEECCCCCChhHhH
Confidence 57888 6 5 335889999999988765 333210 0 00123579999999999986 446
Q ss_pred hHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCc
Q 012331 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (466)
Q Consensus 379 G~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~ 421 (466)
...+.++++.++++|+||||+|||+|+.++|+++.+++.+++.
T Consensus 57 ~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~~~~g 99 (178)
T cd01744 57 EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKFGHRG 99 (178)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCCCCCC
Confidence 6778899999999999999999999999999999988766654
No 20
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.49 E-value=8.3e-14 Score=130.35 Aligned_cols=95 Identities=27% Similarity=0.398 Sum_probs=75.5
Q ss_pred EEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCC-chhH
Q 012331 302 MVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGK 380 (466)
Q Consensus 302 IVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg-~eG~ 380 (466)
|+|.|.+ .-.++.++|++.|+++.+ .|++.+.. ..++.+.++|||+++||++++. ....
T Consensus 2 viD~~~~---~~~~l~~~l~~~~~~~~v----~~~~~~~~-------------~~~~~~~~~d~iii~Gg~~~~~d~~~~ 61 (192)
T PF00117_consen 2 VIDNGDS---FTHSLVRALRELGIDVEV----VRVDSDFE-------------EPLEDLDDYDGIIISGGPGSPYDIEGL 61 (192)
T ss_dssp EEESSHT---THHHHHHHHHHTTEEEEE----EETTGGHH-------------HHHHHTTTSSEEEEECESSSTTSHHHH
T ss_pred EEeCCHH---HHHHHHHHHHHCCCeEEE----EECCCchh-------------hhhhhhcCCCEEEECCcCCcccccccc
Confidence 6776655 447899999999976654 44433110 1112478999999999999986 7889
Q ss_pred HHHHHHHHHcCCcEEEehHHHHHHHHHhcccccccc
Q 012331 381 ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (466)
Q Consensus 381 i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk 416 (466)
+..+++++++++|+||||+|||+|+.++|+++.+.+
T Consensus 62 ~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~ 97 (192)
T PF00117_consen 62 IELIREARERKIPILGICLGHQILAHALGGKVVPSP 97 (192)
T ss_dssp HHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEE
T ss_pred ccccccccccceEEEEEeehhhhhHHhcCCcccccc
Confidence 999999999999999999999999999999998655
No 21
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.47 E-value=2.8e-13 Score=127.98 Aligned_cols=96 Identities=16% Similarity=0.281 Sum_probs=70.7
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCc
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~ 377 (466)
++|.+||.|..+. .++.++|+.+|+++.+ ++.++.+ + +.+.++||||++||+|.+..
T Consensus 2 ~~iliid~~dsf~---~~i~~~l~~~g~~~~v------~~~~~~~-------~-------~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSFT---FNLVDLIRKLGVPMQV------VNVEDLD-------L-------DEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCchH---HHHHHHHHHcCCcEEE------EECCccC-------h-------hHhccCCEEEECCCCCChHH
Confidence 5899999874433 4599999999988876 2322211 1 45678999999999997532
Q ss_pred -hhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccC
Q 012331 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (466)
Q Consensus 378 -eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~ 417 (466)
....+.++. .+.++|+||||||||+|+.++|++|.+++.
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~ 98 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNN 98 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCC
Confidence 223445554 456899999999999999999999977653
No 22
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.46 E-value=2.7e-13 Score=128.43 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=77.1
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCc
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~ 377 (466)
++|.+||+|+.+. +++.+.|...|+++.|. ..++++. .+-+..++|+|++|+|||.|..
T Consensus 2 ~~IL~IDNyDSFt---yNLv~yl~~lg~~v~V~------rnd~~~~------------~~~~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSFT---YNLVQYLRELGAEVTVV------RNDDISL------------ELIEALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccchH---HHHHHHHHHcCCceEEE------ECCccCH------------HHHhhcCCCEEEEcCCCCChHH
Confidence 4799999996655 67888999999777763 2222211 1122356899999999999976
Q ss_pred hh-HHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCc
Q 012331 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (466)
Q Consensus 378 eG-~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~ 421 (466)
.| ..++|+++ ..++|+||||||||.++.+||++|...+.--++
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HG 104 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHG 104 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCC
Confidence 66 56777777 668999999999999999999999887754443
No 23
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.45 E-value=3.1e-13 Score=127.78 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=69.2
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc--cCCCEEEecCCCCCCCc
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRGV 377 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIllPGGfG~rg~ 377 (466)
|.+||.|..+. .++.+.|+..|+.+.+ ++.+.... +.+ .++|||+|+||||++..
T Consensus 2 il~id~~dsft---~~~~~~l~~~g~~v~v------~~~~~~~~--------------~~~~~~~~d~iilsgGpg~p~~ 58 (188)
T TIGR00566 2 VLMIDNYDSFT---YNLVQYFCELGAEVVV------KRNDSLTL--------------QEIEALLPLLIVISPGPCTPNE 58 (188)
T ss_pred EEEEECCcCHH---HHHHHHHHHcCCceEE------EECCCCCH--------------HHHHhcCCCEEEEcCCCCChhh
Confidence 78899774433 5788999999988765 23221110 122 26899999999999743
Q ss_pred h-hHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccC
Q 012331 378 Q-GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (466)
Q Consensus 378 e-G~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~ 417 (466)
. -..+.++++ ..++|+||||+|||+++.++|++|.+++.
T Consensus 59 ~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~ 98 (188)
T TIGR00566 59 AGISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANT 98 (188)
T ss_pred cchhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCC
Confidence 2 235677777 57899999999999999999999988754
No 24
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.44 E-value=3.5e-13 Score=128.46 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=68.9
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchh
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG 379 (466)
|.+||.|..+. .++.+.|+..|+++.+ +..++...+ .-...++||||++||||++...+
T Consensus 2 il~idn~dsft---~nl~~~l~~~g~~v~v------~~~~~~~~~------------~~~~~~~d~iIlsgGP~~p~~~~ 60 (195)
T PRK07649 2 ILMIDNYDSFT---FNLVQFLGELGQELVV------KRNDEVTIS------------DIENMKPDFLMISPGPCSPNEAG 60 (195)
T ss_pred EEEEeCCCccH---HHHHHHHHHCCCcEEE------EeCCCCCHH------------HHhhCCCCEEEECCCCCChHhCC
Confidence 78899875433 5789999999988776 333222110 01124799999999999974333
Q ss_pred -HHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCC
Q 012331 380 -KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418 (466)
Q Consensus 380 -~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a 418 (466)
....++. ...++|+||||||||+|+.++|++|.+.+..
T Consensus 61 ~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~~ 99 (195)
T PRK07649 61 ISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAERL 99 (195)
T ss_pred CchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCCc
Confidence 3344443 3468999999999999999999999887643
No 25
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.44 E-value=3.5e-13 Score=127.28 Aligned_cols=93 Identities=15% Similarity=0.318 Sum_probs=67.6
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc--cCCCEEEecCCCCCCCc
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRGV 377 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIllPGGfG~rg~ 377 (466)
|.+||.|..+. .++.+.|+..|+++.+ ++.+.... +.+ .++|+||++||||++..
T Consensus 2 il~id~~dsf~---~nl~~~l~~~~~~~~v------~~~~~~~~--------------~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 2 LLLIDNYDSFT---YNLYQYFCELGTEVMV------KRNDELQL--------------TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred EEEEECCCchH---HHHHHHHHHCCCcEEE------EeCCCCCH--------------HHHHhcCCCeEEEcCCCCChHh
Confidence 77889774433 5788999999988876 34332211 222 36899999999999733
Q ss_pred hh-HHHHHHHHHHcCCcEEEehHHHHHHHHHhcccccccc
Q 012331 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (466)
Q Consensus 378 eG-~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk 416 (466)
.+ ....++. .+.++|+||||+|||+|+.++|+++.+.+
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~ 97 (191)
T PRK06774 59 AGISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRAR 97 (191)
T ss_pred CCCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCC
Confidence 33 3344443 46789999999999999999999998765
No 26
>CHL00101 trpG anthranilate synthase component 2
Probab=99.43 E-value=5.4e-13 Score=126.23 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=71.0
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchh
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG 379 (466)
|.++|.|..+. .++.+.|+..|+.+.+ ++.+..... .-...++||||++||||++...+
T Consensus 2 iliid~~dsft---~~l~~~l~~~g~~~~v------~~~~~~~~~------------~~~~~~~dgiiisgGpg~~~~~~ 60 (190)
T CHL00101 2 ILIIDNYDSFT---YNLVQSLGELNSDVLV------CRNDEIDLS------------KIKNLNIRHIIISPGPGHPRDSG 60 (190)
T ss_pred EEEEECCCchH---HHHHHHHHhcCCCEEE------EECCCCCHH------------HHhhCCCCEEEECCCCCChHHCc
Confidence 77888664433 5789999999988765 343322110 01225799999999999974333
Q ss_pred HHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCC
Q 012331 380 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420 (466)
Q Consensus 380 ~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s 420 (466)
....+..+.+.++|+||||+|||+|+.++|++|.+.+...+
T Consensus 61 ~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~~~~ 101 (190)
T CHL00101 61 ISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPKPMH 101 (190)
T ss_pred chHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCCccc
Confidence 33344445678999999999999999999999998775443
No 27
>PLN02335 anthranilate synthase
Probab=99.42 E-value=7.4e-13 Score=128.66 Aligned_cols=101 Identities=15% Similarity=0.238 Sum_probs=71.7
Q ss_pred CCCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCC
Q 012331 295 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (466)
Q Consensus 295 ~~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~ 374 (466)
++..+|.+||.|.++ -.++.+.|+.+|+++.+ ++.+.++.+ .-...++|+|||+||||+
T Consensus 16 ~~~~~ilviD~~dsf---t~~i~~~L~~~g~~~~v------~~~~~~~~~------------~~~~~~~d~iVisgGPg~ 74 (222)
T PLN02335 16 KQNGPIIVIDNYDSF---TYNLCQYMGELGCHFEV------YRNDELTVE------------ELKRKNPRGVLISPGPGT 74 (222)
T ss_pred CccCcEEEEECCCCH---HHHHHHHHHHCCCcEEE------EECCCCCHH------------HHHhcCCCEEEEcCCCCC
Confidence 344689999977553 26899999999988876 343322110 011246899999999999
Q ss_pred CCchhH-HHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccC
Q 012331 375 RGVQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (466)
Q Consensus 375 rg~eG~-i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~ 417 (466)
+...+. .+.++ ..+.++|+||||||||+|+.++|+++...+.
T Consensus 75 p~d~~~~~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~~ 117 (222)
T PLN02335 75 PQDSGISLQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSPF 117 (222)
T ss_pred hhhccchHHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCCC
Confidence 844332 33333 3456799999999999999999999987754
No 28
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.42 E-value=7.6e-13 Score=124.82 Aligned_cols=97 Identities=16% Similarity=0.297 Sum_probs=68.2
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCch-
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ- 378 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~e- 378 (466)
|.|+|.|..+. .++.+.|+.+|+++.+ ++.+..+.. ..+. .++||||++||||++...
T Consensus 2 iliid~~d~f~---~~i~~~l~~~g~~~~v------~~~~~~~~~-----------~~~~-~~~dglIlsgGpg~~~d~~ 60 (189)
T PRK05670 2 ILLIDNYDSFT---YNLVQYLGELGAEVVV------YRNDEITLE-----------EIEA-LNPDAIVLSPGPGTPAEAG 60 (189)
T ss_pred EEEEECCCchH---HHHHHHHHHCCCcEEE------EECCCCCHH-----------HHHh-CCCCEEEEcCCCCChHHcc
Confidence 78899663322 5789999999998876 333221110 0122 358999999999997332
Q ss_pred hHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCC
Q 012331 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418 (466)
Q Consensus 379 G~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a 418 (466)
...+.++. ...++|+||||+|||+|+.++|+++.+.+..
T Consensus 61 ~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~~ 99 (189)
T PRK05670 61 ISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKEI 99 (189)
T ss_pred hHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCCc
Confidence 23344554 4568999999999999999999999887653
No 29
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.42 E-value=8e-13 Score=124.35 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=71.2
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHcc--CCCEEEecCCCCCCCc
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 377 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~--~~DGIllPGGfG~rg~ 377 (466)
|++||.+.+ .-.++.++|+..|+++.+ ++.+. ++ +++. ++||||+|||+++...
T Consensus 1 i~iiD~g~~---~~~~l~~~l~~~g~~~~~------~~~~~--------~~-------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVLDFGSQ---YTQLIARRLRELGVYSEL------VPNTT--------PL-------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEEECCch---HHHHHHHHHHHcCCEEEE------EeCCC--------CH-------HHHhhcCCCEEEECCCCCCcCc
Confidence 578883344 557899999999987765 22221 01 2233 3569999999988754
Q ss_pred hhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCC
Q 012331 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418 (466)
Q Consensus 378 eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a 418 (466)
......++.+.+.++|+||||+|||+|+.++|+++.+.+..
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~~ 97 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEKR 97 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCCc
Confidence 45667888888999999999999999999999999876543
No 30
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.40 E-value=1.1e-12 Score=126.84 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=73.3
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCC-
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg- 376 (466)
++|.+++.|..+. .++.+.|...|+.+.+ ++.+.... ....+.+.++|||||+|||+++.
T Consensus 1 ~~ilv~d~~~~~~---~~~~~~l~~~G~~~~~------~~~~~~~~----------~~~~~~~~~~dgliisGGp~~~~~ 61 (214)
T PRK07765 1 MRILVVDNYDSFV---FNLVQYLGQLGVEAEV------WRNDDPRL----------ADEAAVAAQFDGVLLSPGPGTPER 61 (214)
T ss_pred CeEEEEECCCcHH---HHHHHHHHHcCCcEEE------EECCCcCH----------HHHHHhhcCCCEEEECCCCCChhh
Confidence 4788888663322 3577889999988765 23221100 00112356899999999999873
Q ss_pred chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccC
Q 012331 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (466)
Q Consensus 377 ~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~ 417 (466)
..-.+..++++.+.++|+||||+|||+|+.++|++|.+.+.
T Consensus 62 ~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~ 102 (214)
T PRK07765 62 AGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPE 102 (214)
T ss_pred cchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCC
Confidence 33456789999999999999999999999999999987543
No 31
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.40 E-value=2.5e-11 Score=129.20 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=64.2
Q ss_pred CeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-
Q 012331 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (466)
Q Consensus 297 ~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r- 375 (466)
+++|||+- .--+.-.|..=+++|+..|+++ .|+++-. + +.+.++|+|++|||+...
T Consensus 245 ~~~iava~-d~af~f~y~e~~~~L~~~g~~~------~~~~~~~--~--------------~~l~~~D~lilpGG~~~~~ 301 (451)
T PRK01077 245 GVRIAVAR-DAAFNFYYPENLELLRAAGAEL------VFFSPLA--D--------------EALPDCDGLYLGGGYPELF 301 (451)
T ss_pred CceEEEEe-cCcccccHHHHHHHHHHCCCEE------EEeCCcC--C--------------CCCCCCCEEEeCCCchhhH
Confidence 47999975 3344435566678898877654 3454311 0 235688999999997531
Q ss_pred -----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 376 -----g~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
...+..+.++.+.++++|++|||-|+|+|+-.+
T Consensus 302 ~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 302 AAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 225678899999999999999999999999776
No 32
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.39 E-value=1.5e-12 Score=125.37 Aligned_cols=92 Identities=18% Similarity=0.247 Sum_probs=69.2
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc--cCCCEEEecCCCCCCC
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRG 376 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIllPGGfG~rg 376 (466)
+|+++|.|.+ ..+|+.++|+..|+.+.+ ++.+. . .+.+ .++|||||+||||++.
T Consensus 3 ~il~iD~~ds---f~~nl~~~l~~~g~~~~v------~~~~~-~--------------~~~l~~~~~~~iIlsgGPg~~~ 58 (208)
T PRK05637 3 HVVLIDNHDS---FVYNLVDAFAVAGYKCTV------FRNTV-P--------------VEEILAANPDLICLSPGPGHPR 58 (208)
T ss_pred EEEEEECCcC---HHHHHHHHHHHCCCcEEE------EeCCC-C--------------HHHHHhcCCCEEEEeCCCCCHH
Confidence 7999997766 557899999999988876 33321 0 0222 4789999999999974
Q ss_pred chhH-HHHHHHHHHcCCcEEEehHHHHHHHHHhccccccc
Q 012331 377 VQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (466)
Q Consensus 377 ~eG~-i~aIk~are~~iPvLGICLGmQllaia~Gr~v~kl 415 (466)
..+. .+.++.+. .++|+||||+|||+|+.++|++|.+.
T Consensus 59 d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~ 97 (208)
T PRK05637 59 DAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPC 97 (208)
T ss_pred HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccC
Confidence 3333 44555443 57999999999999999999998764
No 33
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.39 E-value=1.2e-12 Score=121.64 Aligned_cols=96 Identities=21% Similarity=0.180 Sum_probs=68.2
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchh
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG 379 (466)
|+++|.+.+ .-.++.++|+.+|+.+.+ ++.+.- . ....+.++||||+|||++......
T Consensus 1 i~~iD~g~~---~~~~~~~~l~~~G~~~~~------~~~~~~-~------------~~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 1 ILILDFGSQ---YTHLIARRVRELGVYSEI------LPNTTP-L------------EEIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred CEEEECCCc---hHHHHHHHHHhcCceEEE------ecCCCC-h------------hhhcccCCCEEEECCCcccccccc
Confidence 568884444 335788999999987664 222210 0 012567899999999998753222
Q ss_pred HHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccC
Q 012331 380 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (466)
Q Consensus 380 ~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~ 417 (466)
.....+++.+.++|+||||+|||+|+.++|+++.+.+.
T Consensus 59 ~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~ 96 (181)
T cd01742 59 APRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDK 96 (181)
T ss_pred cchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCC
Confidence 33445667778999999999999999999999987653
No 34
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.36 E-value=2.6e-12 Score=122.61 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=58.3
Q ss_pred EEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-Cc
Q 012331 300 IAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GV 377 (466)
Q Consensus 300 IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-g~ 377 (466)
|+|+| | .+ |..|+.+||++.|+++.+ +.. | +++.++|+|++||+--.. ..
T Consensus 2 i~iid-yg~g---N~~s~~~al~~~g~~~~~------v~~-----------~-------~~l~~~D~lIlPG~g~~~~~~ 53 (192)
T PRK13142 2 IVIVD-YGLG---NISNVKRAIEHLGYEVVV------SNT-----------S-------KIIDQAETIILPGVGHFKDAM 53 (192)
T ss_pred EEEEE-cCCc---cHHHHHHHHHHcCCCEEE------EeC-----------H-------HHhccCCEEEECCCCCHHHHH
Confidence 88999 8 45 889999999999887654 322 1 567889999999952211 11
Q ss_pred -----hhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 378 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 378 -----eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
.|..++++. ..++|+||||+|||+|+-..
T Consensus 54 ~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 54 SEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred HHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhc
Confidence 245666666 46899999999999999543
No 35
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.36 E-value=3.9e-12 Score=122.76 Aligned_cols=84 Identities=24% Similarity=0.434 Sum_probs=64.6
Q ss_pred eEEEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCC
Q 012331 298 VRIAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (466)
Q Consensus 298 v~IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg 376 (466)
++|+|+| | .+ +..|+.++|+.+|+++.+ ++.. +.+.++|+|++|| +|++.
T Consensus 2 ~~v~iid-~~~G---N~~sl~~al~~~g~~v~v------v~~~------------------~~l~~~d~iIlPG-~g~~~ 52 (210)
T CHL00188 2 MKIGIID-YSMG---NLHSVSRAIQQAGQQPCI------INSE------------------SELAQVHALVLPG-VGSFD 52 (210)
T ss_pred cEEEEEE-cCCc---cHHHHHHHHHHcCCcEEE------EcCH------------------HHhhhCCEEEECC-CCchH
Confidence 4799999 8 46 889999999999988765 2211 3467899999887 44421
Q ss_pred -----c--hhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcc
Q 012331 377 -----V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFAR 410 (466)
Q Consensus 377 -----~--eG~i~aIk~are~~iPvLGICLGmQllaia~Gr 410 (466)
+ .+....++.+.++++|+||||+|||+|+..++.
T Consensus 53 ~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~ 93 (210)
T CHL00188 53 LAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEE 93 (210)
T ss_pred HHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhcccc
Confidence 1 266678888888899999999999999866544
No 36
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.35 E-value=5.1e-12 Score=118.37 Aligned_cols=97 Identities=21% Similarity=0.356 Sum_probs=68.3
Q ss_pred EEEEeccCCchhhH-HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCch
Q 012331 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (466)
Q Consensus 300 IaIVgkY~g~~Day-~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~e 378 (466)
|.++|.|. .| .++.++|+.+|+++.+ ++.+.-.+ ....+.++||||++||++.+...
T Consensus 1 il~~~~~~----~~~~~~~~~l~~~G~~~~~------~~~~~~~~------------~~~~~~~~dgvil~gG~~~~~~~ 58 (184)
T cd01743 1 ILLIDNYD----SFTYNLVQYLRELGAEVVV------VRNDEITL------------EELELLNPDAIVISPGPGHPEDA 58 (184)
T ss_pred CEEEeCCC----ccHHHHHHHHHHcCCceEE------EeCCCCCH------------HHHhhcCCCEEEECCCCCCcccc
Confidence 45677553 34 3577889999988775 33321100 00245789999999999987444
Q ss_pred hHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCC
Q 012331 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418 (466)
Q Consensus 379 G~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a 418 (466)
.....+..+.++++|+||||+|||+|+.++|+++.+.+..
T Consensus 59 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~~ 98 (184)
T cd01743 59 GISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPEP 98 (184)
T ss_pred hhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCCC
Confidence 4455555556778999999999999999999999876543
No 37
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.35 E-value=3.8e-12 Score=120.66 Aligned_cols=97 Identities=15% Similarity=0.324 Sum_probs=69.2
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchh
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG 379 (466)
|.+||.|..+. .++.+.|+..|+.+.+ ++....+.. . -...++|+|+++|||+++...+
T Consensus 2 il~id~~dsft---~~~~~~l~~~g~~~~~------~~~~~~~~~-----------~-~~~~~~~~iilsgGp~~~~~~~ 60 (193)
T PRK08857 2 LLMIDNYDSFT---YNLYQYFCELGAQVKV------VRNDEIDID-----------G-IEALNPTHLVISPGPCTPNEAG 60 (193)
T ss_pred EEEEECCCCcH---HHHHHHHHHCCCcEEE------EECCCCCHH-----------H-HhhCCCCEEEEeCCCCChHHCc
Confidence 78999885533 5688999999988776 333221100 0 0123589999999999973322
Q ss_pred -HHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCC
Q 012331 380 -KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418 (466)
Q Consensus 380 -~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a 418 (466)
..+.++. .+.++|+||||+|||+|+.++|++|.+.+..
T Consensus 61 ~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~~ 99 (193)
T PRK08857 61 ISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQV 99 (193)
T ss_pred chHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCCc
Confidence 3445554 4678999999999999999999999886643
No 38
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.34 E-value=6e-12 Score=124.35 Aligned_cols=83 Identities=20% Similarity=0.388 Sum_probs=66.6
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC--
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-- 375 (466)
++|+|+. ..| ++.++.++|+++|+++.. +.. | +++.++|+|+|||||++.
T Consensus 2 m~igVLa-~qG---~~~e~~~aL~~lG~ev~~------v~~-----------~-------~~L~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLA-LQG---SFNEHIAALRRLGVEAVE------VRK-----------P-------EQLEGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEe-CCC---chHHHHHHHHHCCCcEEE------eCC-----------H-------HHhccCCEEEeCCCHHHHHH
Confidence 6899998 447 888999999999987754 221 1 567899999999998762
Q ss_pred ---CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 376 ---GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 376 ---g~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
...+..+.++.+.+.++|+||||+|||+|+-..
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHh
Confidence 223678888888888999999999999999654
No 39
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.29 E-value=1e-11 Score=138.61 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=79.5
Q ss_pred CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC
Q 012331 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r 375 (466)
...+|+|||.+.+ .-.++.++|+..|+.+.+ ++....+. .-...++|+|||+||||++
T Consensus 515 ~~~~IlVID~gds---~~~~l~~~L~~~G~~v~v------v~~~~~~~-------------~~~~~~~DgLILsgGPGsp 572 (717)
T TIGR01815 515 EGRRILLVDHEDS---FVHTLANYLRQTGASVTT------LRHSHAEA-------------AFDERRPDLVVLSPGPGRP 572 (717)
T ss_pred CCCEEEEEECCCh---hHHHHHHHHHHCCCeEEE------EECCCChh-------------hhhhcCCCEEEEcCCCCCc
Confidence 3469999994333 447899999999988765 22211100 0123579999999999998
Q ss_pred CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCc
Q 012331 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (466)
Q Consensus 376 g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~ 421 (466)
...+....++++.+.++|+||||||||+|+.++|++|.+++..+++
T Consensus 573 ~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~p~~G 618 (717)
T TIGR01815 573 ADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEPVHG 618 (717)
T ss_pred hhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCCCeeC
Confidence 6556678888888999999999999999999999999988766554
No 40
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.29 E-value=1.2e-11 Score=117.79 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=60.0
Q ss_pred eEEEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-
Q 012331 298 VRIAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (466)
Q Consensus 298 v~IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r- 375 (466)
|+|+||| | .+ ++.|+.++|++.|+++.+ +.. + +.+.++|+||+|| +|.+
T Consensus 1 m~i~iid-~g~g---n~~s~~~~l~~~g~~~~~------v~~-----------~-------~~~~~~d~iIlPG-~G~~~ 51 (196)
T PRK13170 1 MNVVIID-TGCA---NLSSVKFAIERLGYEPVV------SRD-----------P-------DVILAADKLFLPG-VGTAQ 51 (196)
T ss_pred CeEEEEe-CCCc---hHHHHHHHHHHCCCeEEE------ECC-----------H-------HHhCCCCEEEECC-CCchH
Confidence 5899999 6 56 889999999999887665 321 1 4577899999977 4443
Q ss_pred -CchhH--HHHHHHHHHcCCcEEEehHHHHHHHHHhcc
Q 012331 376 -GVQGK--ILAAKYAREHRIPYLGICLGMQVAVIEFAR 410 (466)
Q Consensus 376 -g~eG~--i~aIk~are~~iPvLGICLGmQllaia~Gr 410 (466)
..... ...++.+++.++|+||||+|||+|+.+++.
T Consensus 52 ~~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~ 89 (196)
T PRK13170 52 AAMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEE 89 (196)
T ss_pred HHHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhccc
Confidence 11110 112344445689999999999999999843
No 41
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.28 E-value=1.9e-10 Score=122.52 Aligned_cols=89 Identities=25% Similarity=0.286 Sum_probs=62.7
Q ss_pred CeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-
Q 012331 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (466)
Q Consensus 297 ~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r- 375 (466)
+++||++- ...+.--|..=+++|+..|+++ .|+.+-. + +.+.++|+|++|||+..-
T Consensus 244 ~~~Iava~-d~afnFy~~~~~~~L~~~g~~~------~~~~~~~--d--------------~~l~~~d~l~ipGG~~~~~ 300 (449)
T TIGR00379 244 YVRIAVAQ-DQAFNFYYQDNLDALTHNAAEL------VPFSPLE--D--------------TELPDVDAVYIGGGFPELF 300 (449)
T ss_pred CcEEEEEe-chhhceeHHHHHHHHHHCCCEE------EEECCcc--C--------------CCCCCCCEEEeCCcHHHHH
Confidence 47999975 3233323444567888776654 4564410 0 235588999999998642
Q ss_pred -----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 376 -----g~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
...++.++++.+.+++.|+||||-|||+|+-.+
T Consensus 301 ~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 301 AEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 234678899999999999999999999999665
No 42
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.28 E-value=1.9e-11 Score=118.11 Aligned_cols=81 Identities=26% Similarity=0.438 Sum_probs=63.5
Q ss_pred EEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC--C
Q 012331 300 IAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--G 376 (466)
Q Consensus 300 IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r--g 376 (466)
|+|+| | .+ +..|+.+||+..+.++.. +.. | +.+.++|+||+||+ |+. .
T Consensus 2 i~iid-yg~g---Nl~s~~~al~~~~~~~~~------~~~-----------~-------~~l~~~d~iIlPG~-g~~~~~ 52 (210)
T PRK14004 2 IAILD-YGMG---NIHSCLKAVSLYTKDFVF------TSD-----------P-------ETIENSKALILPGD-GHFDKA 52 (210)
T ss_pred EEEEE-CCCc---hHHHHHHHHHHcCCeEEE------ECC-----------H-------HHhccCCEEEECCC-CchHHH
Confidence 89999 8 45 889999999999876643 311 1 56789999999996 432 1
Q ss_pred -----chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhc
Q 012331 377 -----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFA 409 (466)
Q Consensus 377 -----~eG~i~aIk~are~~iPvLGICLGmQllaia~G 409 (466)
..|....++.+...++|+||||+|||+|+.+++
T Consensus 53 ~~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~ 90 (210)
T PRK14004 53 MENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSE 90 (210)
T ss_pred HHHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcc
Confidence 136777888888889999999999999997665
No 43
>PRK00758 GMP synthase subunit A; Validated
Probab=99.27 E-value=1.6e-11 Score=115.20 Aligned_cols=91 Identities=27% Similarity=0.364 Sum_probs=64.0
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCC-CEEEecCCCCCCCch
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGA-DGILVPGGFGNRGVQ 378 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~-DGIllPGGfG~rg~e 378 (466)
|+|+|.+.+ .-.++.++|+.+|+.+.+ ++.+. .+ +++.+. ||||+|||+......
T Consensus 2 i~iid~~~~---~~~~i~~~l~~~g~~~~~------~~~~~--------~~-------~~l~~~~dgivi~Gg~~~~~~~ 57 (184)
T PRK00758 2 IVVVDNGGQ---YNHLIHRTLRYLGVDAKI------IPNTT--------PV-------EEIKAFEDGLILSGGPDIERAG 57 (184)
T ss_pred EEEEECCCc---hHHHHHHHHHHcCCcEEE------EECCC--------CH-------HHHhhcCCEEEECCCCChhhcc
Confidence 889995444 446789999999987654 33221 11 345667 999999998322211
Q ss_pred hHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccC
Q 012331 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (466)
Q Consensus 379 G~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~ 417 (466)
...+++++.++|+||||+|||+|+.++|+++.+.+.
T Consensus 58 ---~~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~ 93 (184)
T PRK00758 58 ---NCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEY 93 (184)
T ss_pred ---ccHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecCCC
Confidence 122344467899999999999999999999987654
No 44
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.27 E-value=1.5e-11 Score=137.94 Aligned_cols=108 Identities=19% Similarity=0.335 Sum_probs=76.1
Q ss_pred CCeEEEEEeccCCchhhHHHHHHHHHHc-CCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCC
Q 012331 296 EPVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Day~SI~~aL~~a-G~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~ 374 (466)
..++|.+||.|..+. .++++.|+.. |..+.+ .+++.+....+ .+..+.++|||||+||||+
T Consensus 4 ~~~~iL~ID~~DSft---~nl~~~l~~~~g~~~~v----~vv~~d~~~~~-----------~~~~l~~~D~VVIspGPG~ 65 (742)
T TIGR01823 4 QRLHVLFIDSYDSFT---YNVVRLLEQQTDISVHV----TTVHSDTFQDQ-----------LLELLPLFDAIVVGPGPGN 65 (742)
T ss_pred CCceEEEEeCCcchH---HHHHHHHHHhcCCCcEE----EEEeCCCCchh-----------hhhhhcCCCEEEECCCCCC
Confidence 467999999884432 5777778775 333322 23444433211 1234678999999999999
Q ss_pred CCchhHHHHHHHHHHc----CCcEEEehHHHHHHHHHhccccccccCCCCc
Q 012331 375 RGVQGKILAAKYAREH----RIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (466)
Q Consensus 375 rg~eG~i~aIk~are~----~iPvLGICLGmQllaia~Gr~v~klk~a~s~ 421 (466)
|.....+..++++++. ++|+||||||||+|+.++|+++...+..+++
T Consensus 66 p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~~hG 116 (742)
T TIGR01823 66 PNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTPKHG 116 (742)
T ss_pred ccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCCCCcC
Confidence 8665556666666654 4999999999999999999999887765443
No 45
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.27 E-value=3.2e-10 Score=121.58 Aligned_cols=309 Identities=19% Similarity=0.238 Sum_probs=155.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCC---------Ccc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDL---------GNY 74 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDl---------g~y 74 (466)
||||| .-|+.||=++++.|.+.|+.+|++|...|== .|+= ..+|+.||+|.|-.. -.+
T Consensus 1 ~~I~G-T~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~--------~~~~----~s~~~~~~~e~~~a~~~qa~a~~~~~~ 67 (475)
T TIGR00313 1 IMVVG-TTSSAGKSTLTAGLCRILARRGYRVAPFKSQ--------NMSL----NSFVTKEGGEIAIAQATQALAAGIEPS 67 (475)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHHhCCCeEEEECCc--------cccc----CccccCCCchhHHHHHHHHHhCCCCch
Confidence 57776 5699999999999999999999999988832 1221 245667776653110 011
Q ss_pred ccccCCCCCCCCc-----ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCc
Q 012331 75 ERFMDIKLTRDNN-----ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGG 149 (466)
Q Consensus 75 erf~~~~l~~~~n-----~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigG 149 (466)
++.--+-|....+ +..|+.+.....++ |.... .+..-++|++.+.+.+ .++|++|||=.|
T Consensus 68 ~~~nPv~lk~~~~~~s~~i~~g~~~~~~~a~~----~~~~~---~~~~~~~i~~~~~~l~--------~~~D~vIIEGaG 132 (475)
T TIGR00313 68 VHMNPILLKPKGNFTSQVIVHGRAVGDMNYQE----YYKNK---VDFFLKAIKESLEILA--------REYDYVVIEGAG 132 (475)
T ss_pred hccCCEEeCcCCCCcCcEEEcCcccCcCCHHH----Hhhhh---hHHHHHHHHHHHHHHH--------hcCCEEEEECCC
Confidence 2211111111100 11122111111111 11101 1233466777777764 368999999877
Q ss_pred ccccc----CcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcC-CCcccEEEEecCCCCCc
Q 012331 150 TIGDI----ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ-GLTPNILACRSTVALDD 224 (466)
Q Consensus 150 tvGdi----Es~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~-GI~pd~lV~Rs~~~l~s 224 (466)
..-|+ +.....+.++.+.. .++.| + -+...+.. --+-+.++.++.. ++...++|+-...+-..
T Consensus 133 Gl~~~~~~~~d~s~~~lA~~l~a-----pVILV----~-d~~~g~~~--a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~ 200 (475)
T TIGR00313 133 SPAEINLLKRDLANMRIAELANA-----DAILV----A-DIDRGGVF--ASIYGTLKLLPENWRKLIKGIVINKFRGNVD 200 (475)
T ss_pred CccccccCcCCchHHHHHHHhCC-----CEEEE----E-eCCccHHH--HHHHHHHHHhChhhcCceEEEEEeccCCcHH
Confidence 66663 12233444444433 24444 1 11111111 1233444544543 36678888865543221
Q ss_pred chhcccCccCCCCCCCeeecC-CCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhHHHHHHHHhhhc-CCCCCeEEEE
Q 012331 225 NVKGKLSQFCHVPEQNIITLY-DVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD-GLHEPVRIAM 302 (466)
Q Consensus 225 ~~r~KisL~~~l~~~~Vi~i~-dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l~~W~~lv~~v~-~~~~~v~IaI 302 (466)
..+..+........-.|++.. -.++. +|. .++.++...+. ....+++|||
T Consensus 201 ~~~~~~~~l~e~~gipvLG~ip~~~~l--l~~--------------------------~e~~~~~~~~~~~~~~~~~Iav 252 (475)
T TIGR00313 201 VLKSGIEKLEELTGIPVLGVLPYDENL--FPE--------------------------EDSLVIQERRSRGNAKSIRIGV 252 (475)
T ss_pred HHHHHHHHHHHhhCCCEEEEecCCCcC--CCh--------------------------HHhhhHHhhhccCCCCCcEEEE
Confidence 112111100000001122210 00010 111 11111111111 1122489999
Q ss_pred EeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-C-----
Q 012331 303 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-G----- 376 (466)
Q Consensus 303 VgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-g----- 376 (466)
+- |.... ++. =+++|+.. + . +.|++.. +.|.++|+|++|||+-.. .
T Consensus 253 ~~-~~~~~-nf~-~~~~L~~~--~-~----~~f~~~~------------------~~l~~~d~lilpGg~~~~~~~~~l~ 304 (475)
T TIGR00313 253 VR-LPRIS-NFT-DFEPLRYE--A-F----VKFLDLD------------------DSLTGCDAVIIPGSKSTIADLYALK 304 (475)
T ss_pred Ec-CCccc-Ccc-ChHHHhhC--C-C----eEEeCCc------------------cccccCCEEEECCcchHHHHHHHHH
Confidence 86 42211 233 35777766 2 2 3455432 246689999999998542 1
Q ss_pred chhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 377 ~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
..++.++|+.+.+++.|+||||.|||+|+-.+
T Consensus 305 ~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 305 QSGFAEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred hcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 23577889988899999999999999999543
No 46
>PRK13566 anthranilate synthase; Provisional
Probab=99.26 E-value=2.1e-11 Score=136.33 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=79.3
Q ss_pred CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC
Q 012331 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r 375 (466)
...+|.+||.+.+ .-.++.+.|+..|+.+.+ ++...- .+ .-...++|||||+||+|.+
T Consensus 525 ~g~~IlvID~~ds---f~~~l~~~Lr~~G~~v~v------v~~~~~-~~------------~~~~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 525 EGKRVLLVDHEDS---FVHTLANYFRQTGAEVTT------VRYGFA-EE------------MLDRVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCCEEEEEECCCc---hHHHHHHHHHHCCCEEEE------EECCCC-hh------------HhhhcCCCEEEECCCCCCh
Confidence 4579999994333 346889999999988865 333210 00 0123579999999999998
Q ss_pred CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCC
Q 012331 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420 (466)
Q Consensus 376 g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s 420 (466)
...+....++.+.+.++|+||||+|||+|+.++|+++.+++..++
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~~~~ 627 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAYPMH 627 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCCCcc
Confidence 655678889999999999999999999999999999988876544
No 47
>PRK00784 cobyric acid synthase; Provisional
Probab=99.22 E-value=4.3e-10 Score=120.94 Aligned_cols=85 Identities=26% Similarity=0.347 Sum_probs=60.7
Q ss_pred CeEEEEEeccCCchhhHHHHHHHHHH-cCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC
Q 012331 297 PVRIAMVGKYTGLSDAYLSILKALLH-ASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (466)
Q Consensus 297 ~v~IaIVgkY~g~~Day~SI~~aL~~-aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r 375 (466)
+++|||+. |...- ++ .=+++|+. +|+++.. +++. +.+.++|+|+||||+...
T Consensus 251 ~~~i~v~~-~~~a~-~f-~nl~~l~~~~g~~v~~------~s~~------------------~~l~~~d~lilpGg~~~~ 303 (488)
T PRK00784 251 ALRIAVIR-LPRIS-NF-TDFDPLRAEPGVDVRY------VRPG------------------EPLPDADLVILPGSKNTI 303 (488)
T ss_pred ceEEEEEe-CCCcC-Cc-cChHHHhhcCCCeEEE------ECCc------------------cccccCCEEEECCccchH
Confidence 58999997 52211 33 33578887 8876643 4331 345689999999998542
Q ss_pred -C-----chhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 376 -G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 376 -g-----~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
. ..+..+.++.+.++++|+||||.|||+|+-.+
T Consensus 304 ~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 304 ADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 1 13567788888899999999999999999655
No 48
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=99.18 E-value=1.9e-12 Score=116.25 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=47.7
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHcchhhhhH
Q 012331 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIF 267 (466)
Q Consensus 202 k~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~Vi~i~dVdTrY~lpl~LreqG~~~~ii 267 (466)
.++||.++++.++|||+.++.|+||+++.+|.+||++++|++|.+|||| +|+++||++|.|+++|
T Consensus 66 ~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTR-aLt~~lR~~G~m~g~I 130 (131)
T PF00988_consen 66 EDFESDRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTR-ALTRKLREKGSMKGVI 130 (131)
T ss_dssp GG-SSSS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HH-HHHHHHHHH--EEEEE
T ss_pred ccCCCCceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHH-HHHHHHHhcCCceEEE
Confidence 3599999999999999999999999999999999999999999999999 9999999999999865
No 49
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.18 E-value=1.9e-09 Score=114.38 Aligned_cols=293 Identities=18% Similarity=0.294 Sum_probs=154.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc-cccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP-YLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp-Yln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~ 79 (466)
|+=|||||- =|+.||=.+++.|-+.|+.+|++|...|.-| |+ || ..|.. -.+
T Consensus 1 m~~~~i~~~-~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--D~-----~~~~~-------------------~~g 53 (433)
T PRK13896 1 MKGFVLGGT-SSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--DP-----SHHEA-------------------VAG 53 (433)
T ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--CH-----HHHHH-------------------HhC
Confidence 566788875 6999999999999999999999999999877 53 43 34432 222
Q ss_pred CCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHHHHHHHHHhcccCCCCCCCCcEEEEe-eCccccccCc
Q 012331 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEIQDWIERVAMIPVDGKEGPVDVCVIE-LGGTIGDIES 156 (466)
Q Consensus 80 ~~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit--~ei~~~i~~~~~~pvd~~~~~~d~~i~E-igGtvGdiEs 156 (466)
... .| +=||.. +.|++...+ ...|++||| .||=. |=+.
T Consensus 54 ~~~---~n-------------------------ld~~~~~~~~i~~~~~~----------~~~d~~vIEG~gGl~-dg~~ 94 (433)
T PRK13896 54 RPS---RT-------------------------LDPWLSGEDGMRRNYYR----------GEGDICVVEGVMGLY-DGDV 94 (433)
T ss_pred CCc---cc-------------------------CChhhCCHHHHHHHHHh----------hcCCEEEEECCCccc-cCCC
Confidence 211 01 112222 224333321 137999999 66654 4332
Q ss_pred chHHHHHHHhhhhcCCCCEEEEEeeeeeeecC-CCccccCchhhhHHHhhc---CCCcccEEEEecCCCC--Cc----ch
Q 012331 157 MPFIEALGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRG---QGLTPNILACRSTVAL--DD----NV 226 (466)
Q Consensus 157 ~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~-~~e~KtKptQhsvk~LrS---~GI~pd~lV~Rs~~~l--~s----~~ 226 (466)
.-..+-++++..- ++.| ..+ .|-.---+|=.++.++.. .++.+.++|+-...+- .. ..
T Consensus 95 ~s~adla~~l~~P-----viLV-------v~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~ 162 (433)
T PRK13896 95 SSTAMVAEALDLP-----VVLV-------VDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGGRHADGIRDAL 162 (433)
T ss_pred CCHHHHHHHHCCC-----EEEE-------EcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHHHHHHHHhh
Confidence 3344555555432 2221 211 111111233333444443 4899999999876541 11 11
Q ss_pred hcccCccCCCCCCCeeecCCCCccchhhHHHH-Hcchh----hhhHhhcCCCCCCChhhHHHHHHHHhh--h------cC
Q 012331 227 KGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR-DQKAH----EAIFKVLNLQGTTKEPLLKEWTSRAEI--C------DG 293 (466)
Q Consensus 227 r~KisL~~~l~~~~Vi~i~dVdTrY~lpl~Lr-eqG~~----~~ii~~l~l~~~~~~~~l~~W~~lv~~--v------~~ 293 (466)
...+..+..+++..-+. +++| +|-+.-- |.... +.+-+.++++ .-.++... . ..
T Consensus 163 ~~~i~vlG~lP~~~~~~---~~~R-HLGLv~~~e~~~~~~~~~~~~~~~d~~---------~l~~~a~~~~~~~~~~~~~ 229 (433)
T PRK13896 163 PDELTYFGRIPPRDDLE---IPDR-HLGLHMGSEAPLDDDALDEAAEHIDAE---------RLAAVAREPPRPEPPEEAP 229 (433)
T ss_pred hhcCceeEecccCCCCC---CCCC-CcCCCcchhhccHHHHHHHHHHhCCHH---------HHHHHhhCCCCcccccccc
Confidence 11233444444333322 2344 3322111 10000 0111112221 00111100 0 01
Q ss_pred CCCCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCC
Q 012331 294 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (466)
Q Consensus 294 ~~~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG 373 (466)
...+++|||.-. ..+.=-|.-=+++|+.+ +++.- +++ +.+ +.+.++|+|++|||+-
T Consensus 230 ~~~~~~iavA~D-~AF~FyY~enl~~L~~~-aelv~------fSP--l~~--------------~~lp~~D~l~lpGG~~ 285 (433)
T PRK13896 230 ATGDPTVAVARD-AAFCFRYPATIERLRER-ADVVT------FSP--VAG--------------DPLPDCDGVYLPGGYP 285 (433)
T ss_pred CCCCCeEEEEEc-CccceeCHHHHHHHHhc-CcEEE------EcC--CCC--------------CCCCCCCEEEeCCCch
Confidence 112378998632 23333566667888887 55432 322 211 2355889999999996
Q ss_pred CC---Cc--hhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 374 NR---GV--QGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 374 ~r---g~--eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
.- .+ .+..+.++.+.+++.|++|||-|||+|+-.+
T Consensus 286 e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 286 ELHADALADSPALDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred hhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 52 11 2345888888899999999999999999444
No 50
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.17 E-value=1.1e-10 Score=110.42 Aligned_cols=86 Identities=24% Similarity=0.269 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-C---------c------
Q 012331 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-G---------V------ 377 (466)
Q Consensus 314 ~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-g---------~------ 377 (466)
.++.++|+.+|+.+.+ ++...-. ......+.++||||+|||++.. . .
T Consensus 22 ~~~~~~l~~~G~~~~i------v~~~~~~-----------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T cd01745 22 QYYVDAVRKAGGLPVL------LPPVDDE-----------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPE 84 (189)
T ss_pred HHHHHHHHHCCCEEEE------eCCCCCh-----------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChh
Confidence 5789999999987755 2221100 0111346789999999998541 1 0
Q ss_pred --hhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccccccc
Q 012331 378 --QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (466)
Q Consensus 378 --eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk 416 (466)
....+.++++.+.++|+||||+|||+|+.++|+++.+.+
T Consensus 85 r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~ 125 (189)
T cd01745 85 RDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQDI 125 (189)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC
Confidence 134678888888999999999999999999999997754
No 51
>PLN02347 GMP synthetase
Probab=99.16 E-value=1.4e-10 Score=126.00 Aligned_cols=94 Identities=22% Similarity=0.306 Sum_probs=67.2
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHcc--CCCEEEecCCCCCCC
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRG 376 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~--~~DGIllPGGfG~rg 376 (466)
+|+++| | +.+ .-.+|.++|++.|+.+.+ ++.+. ++ +.+. ++|||||||||++..
T Consensus 12 ~IlIID-~-G~~-~t~~I~r~lrelgv~~~v------~p~~~--------~~-------~~i~~~~~dgIILsGGP~sv~ 67 (536)
T PLN02347 12 VVLILD-Y-GSQ-YTHLITRRVRELGVYSLL------LSGTA--------SL-------DRIASLNPRVVILSGGPHSVH 67 (536)
T ss_pred EEEEEE-C-CCc-HHHHHHHHHHHCCCeEEE------EECCC--------CH-------HHHhcCCCCEEEECCCCCccc
Confidence 799999 6 311 336899999999987765 33321 01 3333 699999999998752
Q ss_pred chh---H-HHHHHHHHHcCCcEEEehHHHHHHHHHhcccccccc
Q 012331 377 VQG---K-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (466)
Q Consensus 377 ~eG---~-i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk 416 (466)
..+ . ...++.+.+.++|+||||+|||+|+.++|++|.+..
T Consensus 68 ~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~ 111 (536)
T PLN02347 68 VEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGE 111 (536)
T ss_pred ccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecC
Confidence 211 1 234456667799999999999999999999997653
No 52
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.15 E-value=1.3e-10 Score=111.96 Aligned_cols=84 Identities=29% Similarity=0.417 Sum_probs=60.9
Q ss_pred eEEEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-
Q 012331 298 VRIAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (466)
Q Consensus 298 v~IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r- 375 (466)
+||+||| | .+ +..|+.++|++.|+++. +.|+.. | +++.++|+|||||+....
T Consensus 2 ~~~~iid-~g~g---n~~s~~~al~~~g~~~~----v~~~~~-----------~-------~~l~~~d~lIlpG~~~~~~ 55 (209)
T PRK13146 2 MTVAIID-YGSG---NLRSAAKALERAGAGAD----VVVTAD-----------P-------DAVAAADRVVLPGVGAFAD 55 (209)
T ss_pred CeEEEEE-CCCC---hHHHHHHHHHHcCCCcc----EEEECC-----------H-------HHhcCCCEEEECCCCcHHH
Confidence 6899999 8 45 77899999999998642 334432 1 568899999999963321
Q ss_pred ---Cc--hhHHHHHH-HHHHcCCcEEEehHHHHHHHHH
Q 012331 376 ---GV--QGKILAAK-YAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 376 ---g~--eG~i~aIk-~are~~iPvLGICLGmQllaia 407 (466)
.+ .+..+.+. .+.+.++|+||||+|||+|+.+
T Consensus 56 ~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~ 93 (209)
T PRK13146 56 CMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFER 93 (209)
T ss_pred HHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhc
Confidence 11 13444444 4456899999999999999976
No 53
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.15 E-value=1e-10 Score=127.07 Aligned_cols=99 Identities=14% Similarity=0.265 Sum_probs=69.1
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCc-eeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCc-
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVD-LRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV- 377 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~-~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~- 377 (466)
|.+||.|..+. +++.+.|+..|.. +.+ +.+.+.+.+ . -...++||||++||||++..
T Consensus 2 il~idn~dsft---~nl~~~l~~~g~~~v~~------~~~~~~~~~-----------~-~~~~~~d~vIlsgGP~~p~~~ 60 (534)
T PRK14607 2 IILIDNYDSFT---YNIYQYIGELGPEEIEV------VRNDEITIE-----------E-IEALNPSHIVISPGPGRPEEA 60 (534)
T ss_pred EEEEECchhHH---HHHHHHHHHcCCCeEEE------ECCCCCCHH-----------H-HHhcCCCEEEECCCCCChhhC
Confidence 78899874422 5799999999976 332 333322110 0 11246899999999999632
Q ss_pred hhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCC
Q 012331 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 420 (466)
Q Consensus 378 eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s 420 (466)
.-.++.++.+ +.++|+||||+|||+|+.++|+++.+.+..++
T Consensus 61 ~~~~~li~~~-~~~~PvLGIClG~QlLa~a~Gg~V~~~~~~~~ 102 (534)
T PRK14607 61 GISVEVIRHF-SGKVPILGVCLGHQAIGYAFGGKIVHAKRILH 102 (534)
T ss_pred CccHHHHHHh-hcCCCEEEEcHHHHHHHHHcCCeEecCCcccc
Confidence 2234556654 67899999999999999999999988765543
No 54
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.14 E-value=1.8e-10 Score=130.93 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=70.5
Q ss_pred CeEEEEEeccCCchhhHHHHHHHHHHc-CCceeEEeEEEEeeCCCcccccccCCchhhHHHH---HHccCCCEEEecCCC
Q 012331 297 PVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW---KLLKGADGILVPGGF 372 (466)
Q Consensus 297 ~v~IaIVgkY~g~~Day~SI~~aL~~a-G~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~---~~L~~~DGIllPGGf 372 (466)
.++|.+||+|+.+. +++...|... |..+.| +..+++..+ ... ..+..+|+|||+|||
T Consensus 81 ~~~iLlIDnyDSfT---yNL~~~L~~~~g~~~~V------v~nd~~~~~----------~~~~~~~~~~~~d~IVlSPGP 141 (918)
T PLN02889 81 FVRTLLIDNYDSYT---YNIYQELSIVNGVPPVV------VRNDEWTWE----------EVYHYLYEEKAFDNIVISPGP 141 (918)
T ss_pred cceEEEEeCCCchH---HHHHHHHHHhcCCCEEE------EeCCCCCHH----------HHHhhhhcccCCCEEEECCCC
Confidence 47999999995544 5788888887 877665 333322110 000 113579999999999
Q ss_pred CCCCc---hhH-HHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCC
Q 012331 373 GNRGV---QGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418 (466)
Q Consensus 373 G~rg~---eG~-i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a 418 (466)
|.|.. .|. ++.++.+ .++|+||||||||+|+.+||++|.+++..
T Consensus 142 G~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~~ 189 (918)
T PLN02889 142 GSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPEP 189 (918)
T ss_pred CCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCCc
Confidence 99843 232 3333332 47999999999999999999999987643
No 55
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.12 E-value=1.8e-10 Score=109.55 Aligned_cols=88 Identities=35% Similarity=0.531 Sum_probs=67.5
Q ss_pred EEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCC--
Q 012331 300 IAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-- 376 (466)
Q Consensus 300 IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg-- 376 (466)
|+++| | .+ +..++.++|+..|+++.+ +.. + +.+.++|+||+||| |++.
T Consensus 2 i~vid-~g~g---n~~~~~~~l~~~g~~v~~------~~~-----------~-------~~l~~~d~lilpG~-g~~~~~ 52 (199)
T PRK13181 2 IAIID-YGAG---NLRSVANALKRLGVEAVV------SSD-----------P-------EEIAGADKVILPGV-GAFGQA 52 (199)
T ss_pred EEEEe-CCCC---hHHHHHHHHHHCCCcEEE------EcC-----------h-------HHhccCCEEEECCC-CCHHHH
Confidence 88998 7 34 788999999999987654 211 1 45778999999885 3321
Q ss_pred -----chhHHHHHHHHHHcCCcEEEehHHHHHHHHH-----------hcccccccc
Q 012331 377 -----VQGKILAAKYAREHRIPYLGICLGMQVAVIE-----------FARSVLNLR 416 (466)
Q Consensus 377 -----~eG~i~aIk~are~~iPvLGICLGmQllaia-----------~Gr~v~klk 416 (466)
..+..+.++.+++.++|+||||+|||+|+.+ ++++|.+.+
T Consensus 53 ~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~ 108 (199)
T PRK13181 53 MRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFR 108 (199)
T ss_pred HHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcC
Confidence 1356778888888999999999999999999 667776654
No 56
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.12 E-value=2.9e-10 Score=111.82 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=73.6
Q ss_pred CeEEEEEeccC-CchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC
Q 012331 297 PVRIAMVGKYT-GLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (466)
Q Consensus 297 ~v~IaIVgkY~-g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r 375 (466)
+++|.++-.|. + .-.++.+.|+..|.++.+. ....++ ..| +.+.++||+||.||+++.
T Consensus 7 ~~~vlvi~h~~~~---~~g~l~~~l~~~g~~~~v~----~~~~~~-------~~p-------~~l~~~dgvii~Ggp~~~ 65 (239)
T PRK06490 7 KRPVLIVLHQERS---TPGRVGQLLQERGYPLDIR----RPRLGD-------PLP-------DTLEDHAGAVIFGGPMSA 65 (239)
T ss_pred CceEEEEecCCCC---CChHHHHHHHHCCCceEEE----eccCCC-------CCC-------CcccccCEEEEECCCCCC
Confidence 57888887662 3 3356788888888887652 111111 012 356789999999999874
Q ss_pred C-----chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCC
Q 012331 376 G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418 (466)
Q Consensus 376 g-----~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a 418 (466)
. +...++.|+.+.+.++|+||||+|||+|+.++|++|.+.+.+
T Consensus 66 ~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G 113 (239)
T PRK06490 66 NDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDG 113 (239)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCC
Confidence 1 234567788888899999999999999999999999876543
No 57
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.09 E-value=2.3e-10 Score=124.18 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=66.9
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc--cCCCEEEecCCCCCC
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIllPGGfG~r 375 (466)
.+|.+||.|..+. +++.+.|+..|+.+.|. ..+.... ...+.+ .++|+||++||||++
T Consensus 2 ~~iLiIDn~dsft---~nl~~~lr~~g~~v~V~------~~~~~~~-----------~~~~~l~~~~~~~IIlSpGPg~p 61 (531)
T PRK09522 2 ADILLLDNIDSFT---YNLADQLRSNGHNVVIY------RNHIPAQ-----------TLIERLATMSNPVLMLSPGPGVP 61 (531)
T ss_pred CeEEEEeCCChHH---HHHHHHHHHCCCCEEEE------ECCCCCc-----------cCHHHHHhcCcCEEEEcCCCCCh
Confidence 4799999774433 56888999888877662 2110000 001233 358899999999998
Q ss_pred CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccccccc
Q 012331 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (466)
Q Consensus 376 g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk 416 (466)
...+....+......++|+||||+|||+|+.+||++|.+.+
T Consensus 62 ~d~~~~~~i~~~~~~~iPILGIClG~QlLa~a~GG~V~~~~ 102 (531)
T PRK09522 62 SEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG 102 (531)
T ss_pred hhCCCCHHHHHHHhcCCCEEEEcHHHHHHHHhcCCEEEeCC
Confidence 43333323322234589999999999999999999998653
No 58
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.08 E-value=2.5e-10 Score=108.26 Aligned_cols=80 Identities=34% Similarity=0.520 Sum_probs=61.2
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCC---
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 376 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg--- 376 (466)
|+|+| | +.. +-.++.++|+.+|+++.+. +.. +.+.++|+|++||| +.+.
T Consensus 1 i~i~d-~-g~~-~~~~~~~~l~~~g~~v~v~------~~~------------------~~l~~~d~iiipG~-~~~~~~~ 52 (198)
T cd01748 1 IAIID-Y-GMG-NLRSVANALERLGAEVIIT------SDP------------------EEILSADKLILPGV-GAFGDAM 52 (198)
T ss_pred CEEEe-C-CCC-hHHHHHHHHHHCCCeEEEE------cCh------------------HHhccCCEEEECCC-CcHHHHH
Confidence 57888 7 322 6688999999999887652 211 35678999999875 4431
Q ss_pred ----chhHHHHHHHHHHcCCcEEEehHHHHHHHHH
Q 012331 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 377 ----~eG~i~aIk~are~~iPvLGICLGmQllaia 407 (466)
..+..+.++.+.++++|+||||+|||+|+.+
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~ 87 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFES 87 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence 1356788899888999999999999999998
No 59
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.06 E-value=5.2e-10 Score=106.72 Aligned_cols=79 Identities=37% Similarity=0.484 Sum_probs=57.5
Q ss_pred EEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC--C
Q 012331 300 IAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--G 376 (466)
Q Consensus 300 IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r--g 376 (466)
|++|| | .+ +-.|+.++|+..|+++.+ ++. | +++.++|+||+||+ |.+ .
T Consensus 2 i~iid-~g~~---n~~~v~~~l~~~g~~~~~------~~~-----------~-------~~l~~~d~lilPG~-g~~~~~ 52 (201)
T PRK13152 2 IALID-YKAG---NLNSVAKAFEKIGAINFI------AKN-----------P-------KDLQKADKLLLPGV-GSFKEA 52 (201)
T ss_pred EEEEE-CCCC---cHHHHHHHHHHCCCeEEE------ECC-----------H-------HHHcCCCEEEECCC-CchHHH
Confidence 88999 7 44 779999999999876543 221 1 45678999999774 332 1
Q ss_pred c-----hhHHHHHHH-HHHcCCcEEEehHHHHHHHHH
Q 012331 377 V-----QGKILAAKY-AREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 377 ~-----eG~i~aIk~-are~~iPvLGICLGmQllaia 407 (466)
. .+....++. +.+.++|+||||+|||+|+.+
T Consensus 53 ~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 53 MKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred HHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 1 133455544 457899999999999999986
No 60
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.06 E-value=5.1e-10 Score=106.15 Aligned_cols=85 Identities=24% Similarity=0.387 Sum_probs=66.6
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC--
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-- 375 (466)
++|+|+. ..+ +|.+..++|+.+|..+.. ++. | +.+.++|||++|||++..
T Consensus 2 m~~~i~~-~~g---~~~~~~~~l~~~g~~~~~------~~~-----------~-------~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLA-LQG---AVREHLAALEALGAEAVE------VRR-----------P-------EDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEE-ccc---CHHHHHHHHHHCCCEEEE------eCC-----------h-------hHhccCCEEEECCCChHHHH
Confidence 5788887 446 888888999999887654 221 1 457789999999998653
Q ss_pred ---CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcc
Q 012331 376 ---GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR 410 (466)
Q Consensus 376 ---g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr 410 (466)
......+.++.+.++++|+||||+|+|+|+.++|+
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg 91 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEG 91 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhccc
Confidence 12334577888889999999999999999999987
No 61
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.06 E-value=6.8e-10 Score=105.76 Aligned_cols=91 Identities=22% Similarity=0.346 Sum_probs=66.8
Q ss_pred eEEEEEeccCCchhhH-HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-
Q 012331 298 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day-~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r- 375 (466)
+|||++- +.+..+-| .++.++|+.+|.++.+ .++.. + +.+.++|+|++|||++..
T Consensus 1 ~~i~vl~-~~~~~~e~~~~~~~~l~~~g~~~~~----~~~~~-----------~-------~~l~~~d~iii~GG~~~~~ 57 (200)
T PRK13527 1 MKIGVLA-LQGDVEEHIDALKRALDELGIDGEV----VEVRR-----------P-------GDLPDCDALIIPGGESTTI 57 (200)
T ss_pred CEEEEEE-ECCccHHHHHHHHHHHHhcCCCeEE----EEeCC-----------h-------HHhccCCEEEECCCcHHHH
Confidence 3677664 43433334 4678899999977654 22321 1 456789999999998864
Q ss_pred ----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccc
Q 012331 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (466)
Q Consensus 376 ----g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~ 411 (466)
...+..+.++.+.++++|+||||+|||+|+.++|+.
T Consensus 58 ~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~ 97 (200)
T PRK13527 58 GRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDD 97 (200)
T ss_pred HHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCC
Confidence 234568888888889999999999999999999873
No 62
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.06 E-value=4.3e-10 Score=106.41 Aligned_cols=82 Identities=23% Similarity=0.402 Sum_probs=65.1
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC---
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 375 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r--- 375 (466)
||+++. ..+ ++.+..++|+++|+++.. +.+ | +.+.++|+|++|||++..
T Consensus 1 ~igvl~-~qg---~~~e~~~~l~~~g~~~~~------v~~-----------~-------~~l~~~d~liipGG~~~~~~~ 52 (184)
T TIGR03800 1 KIGVLA-LQG---AVREHARALEALGVEGVE------VKR-----------P-------EQLDEIDGLIIPGGESTTLSR 52 (184)
T ss_pred CEEEEE-ccC---CHHHHHHHHHHCCCEEEE------ECC-----------h-------HHhccCCEEEECCCCHHHHHH
Confidence 467765 446 889999999999987754 322 1 457789999999998763
Q ss_pred --CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 376 --g~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
...+....++.+.+.++|+||||+|||+|+-++
T Consensus 53 l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~ 87 (184)
T TIGR03800 53 LLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEI 87 (184)
T ss_pred HHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhh
Confidence 224567788888899999999999999999987
No 63
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.05 E-value=5.2e-10 Score=121.05 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=65.6
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHcc--CCCEEEecCCCCCCC
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRG 376 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~--~~DGIllPGGfG~rg 376 (466)
+|+|+| | |.+ .-.++.++|+.+|+...+ ++.+.- + +.+. ++||||+|||+.+.-
T Consensus 5 ~i~vlD-~-Gsq-~~~li~r~lrelg~~~~v------~p~~~~--------~-------~~l~~~~~dgIIlsGGp~sv~ 60 (511)
T PRK00074 5 KILILD-F-GSQ-YTQLIARRVRELGVYSEI------VPYDIS--------A-------EEIRAFNPKGIILSGGPASVY 60 (511)
T ss_pred EEEEEE-C-CCC-cHHHHHHHHHHCCCeEEE------EECCCC--------H-------HHHhccCCCEEEECCCCcccc
Confidence 699999 7 322 225789999999987765 222210 0 2333 569999999998642
Q ss_pred chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccc
Q 012331 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (466)
Q Consensus 377 ~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~kl 415 (466)
..+.....+.+.+.++|+||||+|||+|+.++|++|...
T Consensus 61 ~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~ 99 (511)
T PRK00074 61 EEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVERA 99 (511)
T ss_pred cCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEec
Confidence 222223345566789999999999999999999998664
No 64
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.04 E-value=8.8e-10 Score=105.17 Aligned_cols=83 Identities=30% Similarity=0.436 Sum_probs=62.7
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC--
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-- 375 (466)
++|.|+| | +.. +-.++.++|+.+|+++.+. +. + ..+.++|+|++|||....
T Consensus 1 ~~~~v~~-~-~~~-~~~~~~~~l~~~G~~~~~~------~~-----------~-------~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVIID-Y-GVG-NLRSVSKALERAGAEVVIT------SD-----------P-------EEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEEE-C-CCc-cHHHHHHHHHHCCCeEEEE------CC-----------H-------HHHccCCEEEECCCCCHHHH
Confidence 4799999 6 322 4488999999999886642 11 1 356789999999853322
Q ss_pred --CchhHHHHHHHHHHcCCcEEEehHHHHHHHHH
Q 012331 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 376 --g~eG~i~aIk~are~~iPvLGICLGmQllaia 407 (466)
......+.++++.++++|+||||+|||+|+.+
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFES 87 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence 23456778888889999999999999999986
No 65
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.04 E-value=4.9e-10 Score=111.04 Aligned_cols=102 Identities=27% Similarity=0.275 Sum_probs=66.8
Q ss_pred CeEEEEEecc---CCch-h-hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCC
Q 012331 297 PVRIAMVGKY---TGLS-D-AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 371 (466)
Q Consensus 297 ~v~IaIVgkY---~g~~-D-ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGG 371 (466)
++.|||.... .+.. + .....++++..+|..... ++...-+.+ ...+.+..+||||++||
T Consensus 7 ~P~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~------lp~~~~~~~----------~~~~~l~~~DGlil~GG 70 (254)
T PRK11366 7 NPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIA------LPHALAEPS----------LLEQLLPKLDGIYLPGS 70 (254)
T ss_pred CCEEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEE------ecCCCCCHH----------HHHHHHHhCCEEEeCCC
Confidence 4679987521 1111 1 113467888888876533 332110000 11234567999999998
Q ss_pred CCCC-----------Cc------hhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccccc
Q 012331 372 FGNR-----------GV------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (466)
Q Consensus 372 fG~r-----------g~------eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~k 414 (466)
+.+- .. .-.++.+++|.+.++|+||||+|||+|++++|++++.
T Consensus 71 ~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~ 130 (254)
T PRK11366 71 PSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHR 130 (254)
T ss_pred CCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEee
Confidence 6431 11 2356788999999999999999999999999999986
No 66
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.01 E-value=5.3e-10 Score=108.26 Aligned_cols=87 Identities=28% Similarity=0.340 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCC--C---------Cc-----
Q 012331 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN--R---------GV----- 377 (466)
Q Consensus 314 ~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~--r---------g~----- 377 (466)
.+.+++++.+|+.+.. ++... + + ......+..+|||++|||.-| | ..
T Consensus 27 ~~Yv~~i~~aG~~pv~------ip~~~-~-------~---~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~ 89 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVP------IPYDA-D-------D---EELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDP 89 (217)
T ss_dssp HHHHHHHHHTT-EEEE------E-SS----------H---HHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHH
T ss_pred HHHHHHHHHcCCEEEE------EccCC-C-------H---HHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCH
Confidence 4568999999998764 33321 0 1 123356788999999999732 1 11
Q ss_pred ---hhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccC
Q 012331 378 ---QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (466)
Q Consensus 378 ---eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~ 417 (466)
.-.+..+++++++++|+||||+|||+|++++|++++....
T Consensus 90 ~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~~~ 132 (217)
T PF07722_consen 90 ERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQDIP 132 (217)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESCCC
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceeecc
Confidence 1245667888889999999999999999999999877443
No 67
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.01 E-value=1.4e-09 Score=106.54 Aligned_cols=96 Identities=21% Similarity=0.154 Sum_probs=68.9
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC---
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 375 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r--- 375 (466)
+|.++-.- ....-.++.++|+..|..+.+. .....+.. + ..+.++|+||++||+...
T Consensus 4 ~ilviqh~--~~e~~g~i~~~L~~~g~~~~v~----~~~~~~~~-------~-------~~~~~~d~lii~Ggp~~~~d~ 63 (234)
T PRK07053 4 TAVAIRHV--AFEDLGSFEQVLGARGYRVRYV----DVGVDDLE-------T-------LDALEPDLLVVLGGPIGVYDD 63 (234)
T ss_pred eEEEEECC--CCCCChHHHHHHHHCCCeEEEE----ecCCCccC-------C-------CCccCCCEEEECCCCCCCCCC
Confidence 56666532 1225567899999999877652 11111110 0 235679999999998642
Q ss_pred ----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccccc
Q 012331 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (466)
Q Consensus 376 ----g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~k 414 (466)
.+....+.++.+.+.++|+||||+|||+|+.++|++|..
T Consensus 64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~ 106 (234)
T PRK07053 64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYP 106 (234)
T ss_pred CcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEec
Confidence 335677888989999999999999999999999999976
No 68
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.00 E-value=1.6e-09 Score=117.79 Aligned_cols=84 Identities=24% Similarity=0.431 Sum_probs=65.2
Q ss_pred CeEEEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC
Q 012331 297 PVRIAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (466)
Q Consensus 297 ~v~IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r 375 (466)
..+|+++| | .+ +-.|+.++|+.+|+++.+ +.. | +.+.++|+||+|||....
T Consensus 6 ~~~i~iiD-yG~G---N~~sl~~al~~~G~~v~~------v~~-----------~-------~~l~~~D~lIlpG~gs~~ 57 (538)
T PLN02617 6 DSEVTLLD-YGAG---NVRSVRNAIRHLGFTIKD------VQT-----------P-------EDILNADRLIFPGVGAFG 57 (538)
T ss_pred CCeEEEEE-CCCC---CHHHHHHHHHHCCCeEEE------ECC-----------h-------hhhccCCEEEECCCCCHH
Confidence 46899999 8 55 789999999999987643 321 1 457889999999843221
Q ss_pred C------chhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 376 G------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 376 g------~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
. ..+..+.++.+.+.++|+||||+|||+|+.++
T Consensus 58 ~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~ 96 (538)
T PLN02617 58 SAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESS 96 (538)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhh
Confidence 1 13567788888889999999999999999765
No 69
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.99 E-value=2.7e-09 Score=102.44 Aligned_cols=101 Identities=23% Similarity=0.276 Sum_probs=65.5
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCC-ceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC--
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASV-DLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~-~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-- 375 (466)
+|.|++ +.+ + ...-|.+.++..|+ ...+ ++.. .+... ....++|||+|+|||-+.
T Consensus 3 ~ilIld-~g~-q-~~~li~r~~re~g~v~~e~------~~~~-~~~~~------------~~~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 3 KILILD-FGG-Q-YLGLIARRLRELGYVYSEI------VPYT-GDAEE------------LPLDSPDGIIISGGPMSVYD 60 (198)
T ss_pred EEEEEe-CCC-c-HhHHHHHHHHHcCCceEEE------EeCC-CCccc------------ccccCCCEEEEcCCCCCCcc
Confidence 688888 523 2 44567888888884 3332 1111 11000 123467999999999653
Q ss_pred -C--chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCcccC
Q 012331 376 -G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 424 (466)
Q Consensus 376 -g--~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~Ef~ 424 (466)
. ..-....|+.+...++|+||||+|||+|+.++|++|.. ++..||+
T Consensus 61 ~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~---~~~~E~G 109 (198)
T COG0518 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVER---GPKREIG 109 (198)
T ss_pred ccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEec---cCCCccc
Confidence 3 33455566666556667999999999999999999965 3335664
No 70
>PRK09065 glutamine amidotransferase; Provisional
Probab=98.98 E-value=8.8e-10 Score=108.10 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=48.4
Q ss_pred HccCCCEEEecCCCCCC-----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccccccc
Q 012331 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (466)
Q Consensus 359 ~L~~~DGIllPGGfG~r-----g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk 416 (466)
.+.++|||||+||+.+. ......+.++.+.+.++|+||||+|||+|+.++|++|.+-+
T Consensus 51 ~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~ 113 (237)
T PRK09065 51 APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNP 113 (237)
T ss_pred ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCC
Confidence 35678999999999762 23456778888888999999999999999999999997643
No 71
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.98 E-value=1.5e-09 Score=103.55 Aligned_cols=82 Identities=32% Similarity=0.438 Sum_probs=61.4
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCC-CC-
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG- 376 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~-rg- 376 (466)
+|+++| | +.. +-.++.++|+..|+++.+ +.. + +++.++|+|++|||... ..
T Consensus 1 ~i~~~d-~-~~~-~~~~i~~~l~~~G~~v~~------~~~-----------~-------~~l~~~d~iiipG~~~~~~~~ 53 (205)
T PRK13141 1 MIAIID-Y-GMG-NLRSVEKALERLGAEAVI------TSD-----------P-------EEILAADGVILPGVGAFPDAM 53 (205)
T ss_pred CEEEEE-c-CCc-hHHHHHHHHHHCCCeEEE------ECC-----------H-------HHhccCCEEEECCCCchHHHH
Confidence 378888 7 322 447899999999988765 211 1 45778999999986321 11
Q ss_pred ----chhHHHHHHHHHHcCCcEEEehHHHHHHHHH
Q 012331 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 377 ----~eG~i~aIk~are~~iPvLGICLGmQllaia 407 (466)
..+..+.++.+.++++|+||||+|||+|+.+
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~ 88 (205)
T PRK13141 54 ANLRERGLDEVIKEAVASGKPLLGICLGMQLLFES 88 (205)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence 1356788888888999999999999999987
No 72
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2e-09 Score=114.26 Aligned_cols=100 Identities=24% Similarity=0.326 Sum_probs=68.4
Q ss_pred CCeEEEEEeccCCchhhHHHHHHHHHHc-CCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccC---CCEEEecCC
Q 012331 296 EPVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG---ADGILVPGG 371 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Day~SI~~aL~~a-G~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~---~DGIllPGG 371 (466)
.++++.++|+|..+. .+|.++|..+ +....+.+...|+.+ ++|+.+.+ +|+|++.+|
T Consensus 13 ~rl~~LlID~YDSyT---fNiy~ll~~~~~vp~V~~vh~~~~~~----------------d~~~~l~q~~~FDaIVVgPG 73 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYT---FNIYQLLSTINGVPPVVIVHDEWTWE----------------DAYHYLYQDVAFDAIVVGPG 73 (767)
T ss_pred hheeEEEEecccchh---hhHHHHHHHhcCCCcEEEEeccccCH----------------HHHHHHhhccccceEEecCC
Confidence 368999999994422 5788888765 444444444445533 24555544 999999999
Q ss_pred CCCCCchhHHHHHHHHHH--cCCcEEEehHHHHHHHHHhcccccc
Q 012331 372 FGNRGVQGKILAAKYARE--HRIPYLGICLGMQVAVIEFARSVLN 414 (466)
Q Consensus 372 fG~rg~eG~i~aIk~are--~~iPvLGICLGmQllaia~Gr~v~k 414 (466)
||.|.-..-+..+.+..+ +.+|+||||||||.|+++.|+.|..
T Consensus 74 PG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~ 118 (767)
T KOG1224|consen 74 PGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVH 118 (767)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceec
Confidence 999932222222323222 3599999999999999999999864
No 73
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.95 E-value=3.1e-09 Score=99.52 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=50.8
Q ss_pred HccCCCEEEecCCCCCC---C---chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCC
Q 012331 359 LLKGADGILVPGGFGNR---G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418 (466)
Q Consensus 359 ~L~~~DGIllPGGfG~r---g---~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a 418 (466)
.+.++|||++|||+.+. . .....+.++++.++++|+||||+|||+++.++|+++...+.+
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~ 108 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKG 108 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCc
Confidence 46789999999998764 1 245677889999999999999999999999999999876654
No 74
>PRK05665 amidotransferase; Provisional
Probab=98.94 E-value=6.1e-09 Score=102.62 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=49.1
Q ss_pred HccCCCEEEecCCCCCC-----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccC
Q 012331 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (466)
Q Consensus 359 ~L~~~DGIllPGGfG~r-----g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~ 417 (466)
.+.++||+|++||+.+. .+....+.++.+.++++|+||||+|||+|+.++|++|.+-+.
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~ 117 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQ 117 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCC
Confidence 45679999999998763 234566778888889999999999999999999999977543
No 75
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=98.93 E-value=3e-09 Score=101.28 Aligned_cols=78 Identities=29% Similarity=0.448 Sum_probs=57.8
Q ss_pred EEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCc-
Q 012331 300 IAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV- 377 (466)
Q Consensus 300 IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~- 377 (466)
|+||| | .+ +-.++.++|+..|+++.+. ..+ +.+.++|+|++|| +|++..
T Consensus 1 ~~~~~-~~~g---n~~~l~~~l~~~g~~v~v~------~~~------------------~~l~~~d~lii~G-~~~~~~~ 51 (196)
T TIGR01855 1 IVIID-YGVG---NLGSVKRALKRVGAEPVVV------KDS------------------KEAELADKLILPG-VGAFGAA 51 (196)
T ss_pred CEEEe-cCCc---HHHHHHHHHHHCCCcEEEE------cCH------------------HHhccCCEEEECC-CCCHHHH
Confidence 57888 6 45 7789999999999887762 210 3567899999988 334211
Q ss_pred ------hhHHHHH-HHHHHcCCcEEEehHHHHHHHHH
Q 012331 378 ------QGKILAA-KYAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 378 ------eG~i~aI-k~are~~iPvLGICLGmQllaia 407 (466)
.+ ++.+ +.+.+.++|+||||+|||+|+.+
T Consensus 52 ~~~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~ 87 (196)
T TIGR01855 52 MARLRENG-LDLFVELVVRLGKPVLGICLGMQLLFER 87 (196)
T ss_pred HHHHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhc
Confidence 12 3444 76778899999999999999998
No 76
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.92 E-value=2.9e-09 Score=100.67 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=61.3
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC--
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-- 375 (466)
+||+++.-+ | +...-.+||++.|+++.+ +. +| +++.++|+|++|||++..
T Consensus 3 ~~igVLalq-G---~~~Eh~~al~~lG~~v~~------v~-----------~~-------~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVLAIQ-G---GYQKHADMFKSLGVEVKL------VK-----------FN-------NDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEEECC-c---cHHHHHHHHHHcCCcEEE------EC-----------CH-------HHHhCCCEEEECCChHHHHH
Confidence 689999844 5 555577899999987554 21 12 568899999999997763
Q ss_pred ---CchhHHHHHHHHHHcCCcEEEehHHHHHHHHH
Q 012331 376 ---GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 376 ---g~eG~i~aIk~are~~iPvLGICLGmQllaia 407 (466)
...+..+.++.+.+ ++|++|||+|||+|+-.
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~ 88 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKG 88 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHcc
Confidence 12467888888765 67999999999999964
No 77
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=98.88 E-value=4.4e-09 Score=103.03 Aligned_cols=57 Identities=28% Similarity=0.557 Sum_probs=47.1
Q ss_pred HHccCCCEEEecCC-------CCCC-----------CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccccc
Q 012331 358 KLLKGADGILVPGG-------FGNR-----------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (466)
Q Consensus 358 ~~L~~~DGIllPGG-------fG~r-----------g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~k 414 (466)
..+...|||++||| +|.. ...-.+..|+.|.+.++|+||||+|||+|+++||++++.
T Consensus 56 ~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q 130 (243)
T COG2071 56 QYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQ 130 (243)
T ss_pred HHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh
Confidence 55678899999999 2221 113467889999999999999999999999999999876
No 78
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=98.88 E-value=6.8e-09 Score=96.47 Aligned_cols=96 Identities=17% Similarity=0.295 Sum_probs=70.3
Q ss_pred EEEEEeccCCchhhHHHHHHHH-HHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCc
Q 012331 299 RIAMVGKYTGLSDAYLSILKAL-LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL-~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~ 377 (466)
.|.++|+|+.+. +++.+.| -..|+.+.| ...+++..+. -.-++++++++++|||.|..
T Consensus 20 piv~IDNYDSFT---~Nv~qYL~~e~g~~~~V------yRNDeiTV~E------------l~~~NP~~LliSPGPG~P~D 78 (223)
T KOG0026|consen 20 PIIVIDNYDSFT---YNLCQYLMGELGCHFEV------YRNDELTVEE------------LKRKNPRGLLISPGPGTPQD 78 (223)
T ss_pred CEEEEecccchh---HHHHHHhhhccCccEEE------EecCcccHHH------------HhhcCCCeEEecCCCCCCcc
Confidence 478889996654 6777777 566777765 3444443211 12358999999999999976
Q ss_pred hhH-HHHHHHHHHcCCcEEEehHHHHHHHHHhcccccccc
Q 012331 378 QGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (466)
Q Consensus 378 eG~-i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk 416 (466)
.|. .++++++- -++|+||||.|.|+|.-+||+++..-.
T Consensus 79 sGIs~~~i~~f~-~~iP~fGvCMGlQCi~e~fGGkv~~a~ 117 (223)
T KOG0026|consen 79 SGISLQTVLELG-PLVPLFGVCMGLQCIGEAFGGKIVRSP 117 (223)
T ss_pred ccchHHHHHHhC-CCCceeeeehhhhhhhhhhCcEEeccC
Confidence 664 46676664 589999999999999999999985443
No 79
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.87 E-value=1.1e-08 Score=99.72 Aligned_cols=90 Identities=26% Similarity=0.469 Sum_probs=64.1
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCC--C
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN--R 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~--r 375 (466)
+||+|++ |-+.. .-..+.++|+.+|+.+.. .|... ..+.++|+|++|||+.. .
T Consensus 1 ~~v~Vl~-~~G~n-~~~~~~~al~~~G~~~~~----i~~~~-------------------~~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVIR-FPGTN-CDRDTVYALRLLGVDAEI----VWYED-------------------GSLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEEe-CCCcC-cHHHHHHHHHHCCCeEEE----EecCC-------------------CCCCCCCEEEECCCCccccc
Confidence 4799998 64411 335678999999988764 23221 12567999999999853 1
Q ss_pred -------CchhHHHHHHHHHHcCCcEEEehHHHHHHHHH--hcccc
Q 012331 376 -------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSV 412 (466)
Q Consensus 376 -------g~eG~i~aIk~are~~iPvLGICLGmQllaia--~Gr~v 412 (466)
......+.++.+.+.++|+||||.|+|+|+.+ +++.+
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l 101 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGAL 101 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCce
Confidence 11335677888888999999999999999975 55543
No 80
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.87 E-value=1e-08 Score=102.29 Aligned_cols=90 Identities=27% Similarity=0.405 Sum_probs=62.1
Q ss_pred CeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCC--C
Q 012331 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--N 374 (466)
Q Consensus 297 ~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG--~ 374 (466)
++||||+- +.|.. .-.+..++|+++|+.+.+ .|+. ++.. .+ ..+.++|+|++||||+ +
T Consensus 3 ~~kvaVl~-~pG~n-~d~e~~~Al~~aG~~v~~----v~~~--~~~~-----~~-------~~l~~~DgLvipGGfs~gD 62 (261)
T PRK01175 3 SIRVAVLR-MEGTN-CEDETVKAFRRLGVEPEY----VHIN--DLAA-----ER-------KSVSDYDCLVIPGGFSAGD 62 (261)
T ss_pred CCEEEEEe-CCCCC-CHHHHHHHHHHCCCcEEE----Eeec--cccc-----cc-------cchhhCCEEEECCCCCccc
Confidence 46899997 65543 224678999999988654 2332 2111 00 3467899999999985 3
Q ss_pred C---C------ch-hHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 375 R---G------VQ-GKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 375 r---g------~e-G~i~aIk~are~~iPvLGICLGmQllai 406 (466)
. + +. .+.++++.+.++++|+||||+|+|+|+-
T Consensus 63 ~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~ 104 (261)
T PRK01175 63 YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVE 104 (261)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHH
Confidence 2 1 11 1236788888999999999999999994
No 81
>PRK07567 glutamine amidotransferase; Provisional
Probab=98.84 E-value=9.4e-09 Score=101.26 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=44.4
Q ss_pred HccCCCEEEecCCCCCCCc-----h--------hHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccccc
Q 012331 359 LLKGADGILVPGGFGNRGV-----Q--------GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (466)
Q Consensus 359 ~L~~~DGIllPGGfG~rg~-----e--------G~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~k 414 (466)
.+.++|||||+||+.+... . ...++++.+.+.++|+||||+|||+|+.++|++|.+
T Consensus 48 ~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~ 116 (242)
T PRK07567 48 DLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR 116 (242)
T ss_pred CHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec
Confidence 4567899999999976411 1 123456666789999999999999999999999976
No 82
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.82 E-value=1.3e-08 Score=102.08 Aligned_cols=82 Identities=27% Similarity=0.380 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCC----chhHHHHHHHHHH
Q 012331 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAKYARE 389 (466)
Q Consensus 314 ~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg----~eG~i~aIk~are 389 (466)
.|.+++++.+|+.+.. .+++.+. + ...+.+..+|||++|||+-+.. ..-....++.|.+
T Consensus 23 ~~Yv~~l~~aG~~vvp----i~~~~~~---~----------~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~ 85 (273)
T cd01747 23 ASYVKFLESAGARVVP----IWINESE---E----------YYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALE 85 (273)
T ss_pred HHHHHHHHHCCCeEEE----EEeCCcH---H----------HHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHH
Confidence 4678999999987643 3454321 1 1124578899999999975431 2222344566665
Q ss_pred cC-----CcEEEehHHHHHHHHHhcccc
Q 012331 390 HR-----IPYLGICLGMQVAVIEFARSV 412 (466)
Q Consensus 390 ~~-----iPvLGICLGmQllaia~Gr~v 412 (466)
.+ +|+||||||||+|+.++|+++
T Consensus 86 ~~~~g~~~Pv~GiClG~QlL~~~~gg~~ 113 (273)
T cd01747 86 RNDAGDYFPVWGTCLGFELLTYLTSGET 113 (273)
T ss_pred hhhcCCCCcEEEEcHHHHHHHHHhCCCc
Confidence 43 899999999999999999875
No 83
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.76 E-value=4.4e-08 Score=96.07 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=46.7
Q ss_pred HccCCCEEEecCCCCCCC--------c--hhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccc
Q 012331 359 LLKGADGILVPGGFGNRG--------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (466)
Q Consensus 359 ~L~~~DGIllPGGfG~rg--------~--eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~kl 415 (466)
.+.++|||||+||+.... + ....+.++.+.++++|+||||+|+|+++.++|++|.+-
T Consensus 42 ~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~ 108 (235)
T PRK08250 42 NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHS 108 (235)
T ss_pred CccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccC
Confidence 356799999999986521 1 24467788888899999999999999999999999753
No 84
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.75 E-value=2.2e-08 Score=95.30 Aligned_cols=83 Identities=27% Similarity=0.260 Sum_probs=61.9
Q ss_pred EEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC----
Q 012331 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---- 375 (466)
Q Consensus 300 IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r---- 375 (466)
|+++. | +..-|+.|+.++++..|+++.+ ++.. +.+.++|+|+||||+...
T Consensus 1 ~~~~~-y-~~~gN~~~l~~~~~~~G~~~~~------~~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVIR-Y-PDISNFTDLDPLAREPGVDVRY------VEVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEeec-C-CCccCHHHHHHHHhcCCceEEE------EeCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 45665 7 3233899999999999987764 3331 125678999999998432
Q ss_pred C--chhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 376 G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 376 g--~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
. ..+..+.|+.+.++++|+||||.|||+|+-.+
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 1 23567788888889999999999999999766
No 85
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.73 E-value=4.7e-08 Score=95.08 Aligned_cols=84 Identities=27% Similarity=0.525 Sum_probs=62.0
Q ss_pred CeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHcc-CCCEEEecCCCCC-
Q 012331 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGN- 374 (466)
Q Consensus 297 ~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~-~~DGIllPGGfG~- 374 (466)
++||||+- +-|.. +..-+..|++++|.++.. .|..-. .+. ++|+|++||||.+
T Consensus 2 ~~kvaVi~-fpGtN-~d~d~~~A~~~aG~~~~~----V~~~d~-------------------~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVLR-FPGTN-CDYDMAAAFERAGFEAED----VWHSDL-------------------LLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEEE-cCCcC-chHHHHHHHHHcCCCceE----EEeeec-------------------ccCCCccEEEEcCCCCcc
Confidence 57899996 74533 455677899999998864 455321 233 6999999999865
Q ss_pred ---C-C----chhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 375 ---R-G----VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 375 ---r-g----~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
| + ....++.++.+.+.++|+||||-|+|+|.
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~ 95 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS 95 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHH
Confidence 2 1 23456667777789999999999999999
No 86
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=98.72 E-value=4.8e-08 Score=99.47 Aligned_cols=78 Identities=28% Similarity=0.557 Sum_probs=62.6
Q ss_pred EEEEecc-CCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecC--CCCCC-
Q 012331 300 IAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG--GFGNR- 375 (466)
Q Consensus 300 IaIVgkY-~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPG--GfG~r- 375 (466)
+-++| | .+ +..|+.+||+|.|+.+.. +. .| .++.++|.+++|| .||..
T Consensus 4 v~~ld-~~ag---n~~si~nal~hlg~~i~~------v~-----------~P-------~DI~~a~rLIfPGVGnfg~~~ 55 (541)
T KOG0623|consen 4 VTLLD-YGAG---NVRSIRNALRHLGFSIKD------VQ-----------TP-------GDILNADRLIFPGVGNFGPAM 55 (541)
T ss_pred EEEEe-cCCc---cHHHHHHHHHhcCceeee------cc-----------Cc-------hhhccCceEeecCcccchHHH
Confidence 55667 7 45 889999999999998764 21 12 5688999999999 35542
Q ss_pred ---CchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 376 ---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 376 ---g~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
.-.|+.+.++...++++|++|||+|.|+|.
T Consensus 56 D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF 88 (541)
T KOG0623|consen 56 DVLNRTGFAEPLRKYIESGKPFMGICVGLQALF 88 (541)
T ss_pred HHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHh
Confidence 336889999999999999999999999997
No 87
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.69 E-value=3.8e-08 Score=92.71 Aligned_cols=75 Identities=21% Similarity=0.389 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-----CchhHHHHHHH
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKY 386 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-----g~eG~i~aIk~ 386 (466)
+...-.++|+..|+++.. +... +.+.++|+|++|||+... ...+..+.++.
T Consensus 9 ~~~e~~~~l~~~g~~v~~------v~~~------------------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~ 64 (183)
T cd01749 9 DFREHIRALERLGVEVIE------VRTP------------------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLRE 64 (183)
T ss_pred CcHHHHHHHHHCCCeEEE------ECCH------------------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHHH
Confidence 334445889999887654 3221 357789999999987531 22355777888
Q ss_pred HHHcCCcEEEehHHHHHHHHHhcc
Q 012331 387 AREHRIPYLGICLGMQVAVIEFAR 410 (466)
Q Consensus 387 are~~iPvLGICLGmQllaia~Gr 410 (466)
+.+.++|+||||+|||+|+.+++.
T Consensus 65 ~~~~g~PvlGiC~G~qlL~~~~~~ 88 (183)
T cd01749 65 FIRAGKPVFGTCAGLILLAKEVED 88 (183)
T ss_pred HHHcCCeEEEECHHHHHHHHHhcc
Confidence 888999999999999999999987
No 88
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.67 E-value=7e-08 Score=94.74 Aligned_cols=83 Identities=25% Similarity=0.320 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCC---------chh-HH
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---------VQG-KI 381 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg---------~eG-~i 381 (466)
+-.++.++|+.+|+++.+ .|+.. .... ...+.++|+|++||||.... ... ..
T Consensus 11 ~~~~~~~al~~aG~~v~~----v~~~~-~~~~-------------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~ 72 (238)
T cd01740 11 CDRDMAYAFELAGFEAED----VWHND-LLAG-------------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLM 72 (238)
T ss_pred CHHHHHHHHHHcCCCEEE----EeccC-Cccc-------------cCCHhhCCEEEECCCCCcccccccccccccChhHH
Confidence 456788999999988764 23321 1110 02467899999999975321 112 56
Q ss_pred HHHHHHHHcCCcEEEehHHHHHHHHH--hcccc
Q 012331 382 LAAKYAREHRIPYLGICLGMQVAVIE--FARSV 412 (466)
Q Consensus 382 ~aIk~are~~iPvLGICLGmQllaia--~Gr~v 412 (466)
+.++.+.++++|+||||.|+|+|+-+ +++.+
T Consensus 73 ~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~ 105 (238)
T cd01740 73 EEVKEFAERGGLVLGICNGFQILVELGLLPGAL 105 (238)
T ss_pred HHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc
Confidence 78888889999999999999999975 54443
No 89
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.62 E-value=2e-07 Score=90.61 Aligned_cols=90 Identities=24% Similarity=0.439 Sum_probs=64.2
Q ss_pred eEEEEEeccCCchhhHHHHHHHHH-HcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALL-HASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~-~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r- 375 (466)
++|||+. |.|.. +-.++.+||+ .+|+++.. .|... ..+.++|+|++|||++..
T Consensus 1 ~~v~Vl~-~~G~n-~~~d~~~a~~~~~G~~~~~----v~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVIV-FPGSN-CDRDMARALRDLLGAEPEY----VWHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEEe-cCCcC-hHHHHHHHHHhcCCCeEEE----EecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 4799997 64522 4467889998 88877643 22211 246688999999998531
Q ss_pred --------CchhHHHHHHHHHHcCCcEEEehHHHHHHHHH--hcccc
Q 012331 376 --------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSV 412 (466)
Q Consensus 376 --------g~eG~i~aIk~are~~iPvLGICLGmQllaia--~Gr~v 412 (466)
......+.++.+.++++|++|||.|+|+|+.+ +.+++
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l 102 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL 102 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence 12445677888888999999999999999975 54443
No 90
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.54 E-value=1.7e-07 Score=89.49 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC------CchhHHHHHH
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR------GVQGKILAAK 385 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r------g~eG~i~aIk 385 (466)
-|..-.++|+++|+++.+ +++.. . +.+.++|+|+||||+... ...++.++++
T Consensus 12 ~y~e~~~~l~~~G~~v~~------~s~~~--~--------------~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~ 69 (198)
T cd03130 12 YYPENLELLEAAGAELVP------FSPLK--D--------------EELPDADGLYLGGGYPELFAEELSANQSMRESIR 69 (198)
T ss_pred ccHHHHHHHHHCCCEEEE------ECCCC--C--------------CCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHH
Confidence 566677899999976643 43310 0 234569999999986541 2246788899
Q ss_pred HHHHcCCcEEEehHHHHHHHHHh
Q 012331 386 YAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 386 ~are~~iPvLGICLGmQllaia~ 408 (466)
.+.++++|++|||.|||+|+-..
T Consensus 70 ~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 70 AFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred HHHHcCCCEEEEcccHHHHHHHh
Confidence 98899999999999999999655
No 91
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.51 E-value=2.1e-07 Score=100.02 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=53.7
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCC-ceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCC-C
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASV-DLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-R 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~-~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~-r 375 (466)
++|+|+. ..|+.+|+++.+. .+. +.|++. | +.|.++|+||||||.-. .
T Consensus 1 m~iGvla--------l~sv~~al~~lg~~~~~----vv~~~~-----------~-------~~l~~~D~lILPGG~~~~~ 50 (476)
T PRK06278 1 MEIGLLD--------IKGSLPCFENFGNLPTK----IIDENN-----------I-------KEIKDLDGLIIPGGSLVES 50 (476)
T ss_pred CEEEEEe--------hhhHHHHHHHhcCCCcE----EEEeCC-----------h-------HHhccCCEEEECCCchhhc
Confidence 4688875 2688899998886 333 344432 1 56889999999998522 1
Q ss_pred C-c-hhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 376 G-V-QGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 376 g-~-eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
+ + ++..++++.+ ++|+||||.|||||+-..
T Consensus 51 ~~l~~~l~~~i~~~---g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 51 GSLTDELKKEILNF---DGYIIGICSGFQILSEKI 82 (476)
T ss_pred chHHHHHHHHHHHc---CCeEEEEcHHHHhccccc
Confidence 1 1 3444444433 899999999999999654
No 92
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.32 E-value=1.2e-06 Score=87.44 Aligned_cols=89 Identities=25% Similarity=0.321 Sum_probs=55.2
Q ss_pred CeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-
Q 012331 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (466)
Q Consensus 297 ~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r- 375 (466)
++||+|+- +-|.. .-.....||+.+|+++.. +.-+++-.. + ..|.++|+|++||||+.-
T Consensus 1 kpkV~Vl~-~pGtN-ce~e~~~A~~~aG~~~~~------v~~~dl~~~-----~-------~~l~~~~~lvipGGFS~gD 60 (259)
T PF13507_consen 1 KPKVAVLR-FPGTN-CERETAAAFENAGFEPEI------VHINDLLSG-----E-------SDLDDFDGLVIPGGFSYGD 60 (259)
T ss_dssp --EEEEEE--TTEE-EHHHHHHHHHCTT-EEEE------EECCHHHTT-----S---------GCC-SEEEE-EE-GGGG
T ss_pred CCEEEEEE-CCCCC-CHHHHHHHHHHcCCCceE------EEEEecccc-----c-------CchhhCcEEEECCccCccc
Confidence 36888886 53432 556788999999998865 222222110 0 468899999999998652
Q ss_pred -Cc------------hhHHHHHHHHHHc-CCcEEEehHHHHHHH
Q 012331 376 -GV------------QGKILAAKYAREH-RIPYLGICLGMQVAV 405 (466)
Q Consensus 376 -g~------------eG~i~aIk~are~-~iPvLGICLGmQlla 405 (466)
-- ....++++.+.++ +.|+||||-|+|+|.
T Consensus 61 ~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~ 104 (259)
T PF13507_consen 61 YLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILV 104 (259)
T ss_dssp TTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHC
T ss_pred cchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHH
Confidence 11 1235677777787 999999999999998
No 93
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=98.24 E-value=1.3e-06 Score=91.94 Aligned_cols=56 Identities=30% Similarity=0.441 Sum_probs=42.6
Q ss_pred cCCCEEEecCCCCCC------CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCcccCC
Q 012331 361 KGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 425 (466)
Q Consensus 361 ~~~DGIllPGGfG~r------g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~Ef~~ 425 (466)
.++-||++||||-+- .+...+ .+.++|+||||.|||+|+-.+|+.|.+ ++..|.++
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp~i------f~~~vpvLGICYGmQ~i~~~~Gg~V~~---~~~RE~G~ 119 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDPAI------FELGVPVLGICYGMQLINKLNGGTVVK---GMVREDGE 119 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCChhH------hccCCcceeehhHHHHHHHHhCCcccc---ccccCCCC
Confidence 478999999999762 232222 345799999999999999999999966 55555544
No 94
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.15 E-value=5e-06 Score=78.80 Aligned_cols=84 Identities=25% Similarity=0.446 Sum_probs=63.4
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcC-CceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG-~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r- 375 (466)
++||++. +.| +..-=+++|+.++ .++ .|+.. | ++|.++||+++|||-...
T Consensus 1 m~IGVLa-lQG---~v~EH~~~l~~~~~~e~------~~Vk~-----------~-------~dL~~~d~LIiPGGESTTi 52 (194)
T COG0311 1 MKIGVLA-LQG---AVEEHLEALEKAGGAEV------VEVKR-----------P-------EDLEGVDGLIIPGGESTTI 52 (194)
T ss_pred CeEEEEE-ecc---cHHHHHHHHHhhcCCce------EEEcC-----------H-------HHhccCcEEEecCccHHHH
Confidence 4789987 545 4444467788775 433 33422 2 688999999999998762
Q ss_pred ----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhc
Q 012331 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFA 409 (466)
Q Consensus 376 ----g~eG~i~aIk~are~~iPvLGICLGmQllaia~G 409 (466)
...|+.+.++.+.++++|+||.|-||-+|+-+.-
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLakei~ 90 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKEIL 90 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhhhc
Confidence 2358889999999999999999999999996554
No 95
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.14 E-value=0.00028 Score=74.88 Aligned_cols=129 Identities=23% Similarity=0.220 Sum_probs=87.6
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHcc-CCCEEEecCCCCCC-
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR- 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~-~~DGIllPGGfG~r- 375 (466)
.|||+... ..+.=-|.--++.|+.+|+++.- .++ +++ +.+. ++|+|.|||||-+-
T Consensus 246 ~rIAVA~D-~AF~FyY~~nl~~Lr~~GAelv~------FSP--L~D--------------~~lP~~~D~vYlgGGYPElf 302 (451)
T COG1797 246 VRIAVARD-AAFNFYYPENLELLREAGAELVF------FSP--LAD--------------EELPPDVDAVYLGGGYPELF 302 (451)
T ss_pred ceEEEEec-chhccccHHHHHHHHHCCCEEEE------eCC--cCC--------------CCCCCCCCEEEeCCCChHHH
Confidence 68998642 24444677788999999998853 222 222 2454 69999999998762
Q ss_pred -----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccccccccCCCCcccCCCCCCCeEEeCCCCCCCCCccc-ccc
Q 012331 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT-MRL 449 (466)
Q Consensus 376 -----g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk~a~s~Ef~~~~~~pVi~l~~e~~~~~~Ggt-mRL 449 (466)
..+.+.++|+.+.+.++|++|=|-|+--|+- .|.++ .+..++.+.++|. ...|+.. +.|
T Consensus 303 A~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~-------~le~~------~G~~~~M~Gvlp~--~~~m~~Rl~~l 367 (451)
T COG1797 303 AEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGE-------SLEDA------DGDTYEMVGVLPG--STRMTKRLQAL 367 (451)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCceEEecccceeehh-------heecc------CCceeeeeeeecc--chhhhhhhhcc
Confidence 3355788999999999999999999977761 12222 2234666777664 3456666 568
Q ss_pred CCcceEEecCCcccc
Q 012331 450 GSRRTYFQIKDCKSA 464 (466)
Q Consensus 450 G~~~~~~~~~~~~~~ 464 (466)
|=+.......+.+.+
T Consensus 368 GY~~~~~~~d~~~~~ 382 (451)
T COG1797 368 GYREAEAVDDTLLLR 382 (451)
T ss_pred ceeEEEecCCccccc
Confidence 877777776665543
No 96
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=98.05 E-value=1.5e-05 Score=76.61 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=46.6
Q ss_pred HHccCCCEEEecCCCCCC----C-chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccccccc
Q 012331 358 KLLKGADGILVPGGFGNR----G-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (466)
Q Consensus 358 ~~L~~~DGIllPGGfG~r----g-~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v~klk 416 (466)
++|.++||++++|..-+. . +.-....++.....++|++|||.|||+++-+.|++|-.-+
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~ 118 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAP 118 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCC
Confidence 578889999999965442 2 2345566777778889999999999999999999986543
No 97
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=98.04 E-value=3e-05 Score=79.09 Aligned_cols=113 Identities=14% Similarity=0.225 Sum_probs=68.3
Q ss_pred CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc--cCCCEEEecCCCC
Q 012331 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFG 373 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIllPGGfG 373 (466)
++++|+|+.---.-.+.-..+.+.|...... +.+.+...++-....... +.-.+|-..++++ .++||+||.|+|-
T Consensus 34 rpl~i~ilNlMp~k~~TE~q~~rll~~~~~q--v~v~~~~~~~h~~~~~~~-~hl~~~y~~~~~i~~~~~DG~IITGAp~ 110 (302)
T PRK05368 34 RPLKILILNLMPKKIETETQFLRLLGNTPLQ--VDIHLLRIDSHESKNTPA-EHLENFYCTFEDIKDEKFDGLIITGAPV 110 (302)
T ss_pred CCccEEEEeCCCCCchHHHHHHHHhcCCCce--EEEEEEecCCcCCCCCCH-HHHHHhccCHHHhccCCCCEEEEcCCCC
Confidence 3689999973222223556677777443333 333333333322111100 0011222234445 3699999999885
Q ss_pred C--C--C---chhHHHHHHHHHHcCCcEEEehHHHHHHHHHhccc
Q 012331 374 N--R--G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (466)
Q Consensus 374 ~--r--g---~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~ 411 (466)
+ . . +.-..+.+++++++.+|+||||.|+|+++.++|+.
T Consensus 111 e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi 155 (302)
T PRK05368 111 EQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGI 155 (302)
T ss_pred CCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCC
Confidence 5 1 1 23466777889999999999999999999999994
No 98
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.99 E-value=1.4e-05 Score=77.05 Aligned_cols=93 Identities=22% Similarity=0.174 Sum_probs=63.6
Q ss_pred CCeEEEEEeccCCchhh-HHHHHHHHHHc-CCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCC
Q 012331 296 EPVRIAMVGKYTGLSDA-YLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Da-y~SI~~aL~~a-G~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG 373 (466)
...+|+++..=....+. ..++.++++.. |+++... +..+ .+ ...+.|.++|+|++|||-=
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~------~~~~--~~----------~~~~~l~~ad~I~l~GG~~ 91 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHL------HLFD--TE----------DPLDALLEADVIYVGGGNT 91 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEE------eccC--cc----------cHHHHHhcCCEEEECCchH
Confidence 45799999832333344 45789999999 8877642 1100 00 0126788999999999621
Q ss_pred CC---Cc--hhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 374 NR---GV--QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 374 ~r---g~--eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
.+ .+ .+..++++.+.+++.|++|||.|||+|.-
T Consensus 92 ~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 92 FNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFP 129 (212)
T ss_pred HHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCC
Confidence 11 11 36777788878889999999999999984
No 99
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.96 E-value=4.4e-05 Score=61.37 Aligned_cols=76 Identities=28% Similarity=0.358 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCC----chhHHHHHHHH
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAKYA 387 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg----~eG~i~aIk~a 387 (466)
.+.+..++|+.+++.+.+ ++........ .....++|++++|||+..+. ....++.++.+
T Consensus 13 ~~~~~~~~l~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~ 75 (115)
T cd01653 13 ELASPLDALREAGAEVDV------VSPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75 (115)
T ss_pred hhHHHHHHHHHCCCeEEE------EcCCCCceec-----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHH
Confidence 456788999999865554 4443221100 02356899999999988752 25678889999
Q ss_pred HHcCCcEEEehHHHHHH
Q 012331 388 REHRIPYLGICLGMQVA 404 (466)
Q Consensus 388 re~~iPvLGICLGmQll 404 (466)
.++++|++|+|.|+|++
T Consensus 76 ~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 76 AAAGKPILGICLGAQLL 92 (115)
T ss_pred HHcCCEEEEECchhHhH
Confidence 99999999999999999
No 100
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.88 E-value=4.7e-05 Score=89.77 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=63.7
Q ss_pred CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEee---CCCcccccccCCchhhHHHHHHccCCCEEEecCCC
Q 012331 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIP---ACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~---s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGf 372 (466)
.++||+|+- +-|.. +-.....||+.+|+++.. .|+. +..+++. .......|.++|+|++||||
T Consensus 976 ~kpkvaIl~-~pGtN-ce~d~a~Af~~aG~~~~~----v~~~dl~~~~i~~s--------~~~~~~~l~~~~~l~~pGGF 1041 (1239)
T TIGR01857 976 EKPRVVIPV-FPGTN-SEYDSAKAFEKEGAEVNL----VIFRNLNEEALVES--------VETMVDEIDKSQILMLPGGF 1041 (1239)
T ss_pred CCCeEEEEE-CCCCC-CHHHHHHHHHHcCCceEE----EEEecCcccccccc--------hhhhhcccccCcEEEEcCcc
Confidence 368999987 64432 556678999999998543 2332 2221110 00011347899999999998
Q ss_pred CCC----Cc----------hhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 373 GNR----GV----------QGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 373 G~r----g~----------eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
+.- +- ....++++.+.+.+.|+||||.|+|+|+
T Consensus 1042 SyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~ 1088 (1239)
T TIGR01857 1042 SAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALV 1088 (1239)
T ss_pred CcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHH
Confidence 652 11 2345567777778999999999999998
No 101
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.85 E-value=1.5e-05 Score=73.46 Aligned_cols=51 Identities=31% Similarity=0.376 Sum_probs=42.9
Q ss_pred HHccCCCEEEecCCCCCC------CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 358 KLLKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 358 ~~L~~~DGIllPGGfG~r------g~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
+.+.++|+|+||||+-.- ...++.++|+.+.+++.|++|||-|||+|.-.+
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 356789999999998762 235788999999999999999999999999554
No 102
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.83 E-value=2.4e-05 Score=69.22 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-----CchhHHHHH
Q 012331 310 SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAA 384 (466)
Q Consensus 310 ~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-----g~eG~i~aI 384 (466)
..+.+++.++|+... .+ ..+..+++... .|+ .++|.+|+|||.... ...+ .+++
T Consensus 12 ~~~~~~~~~~L~~~~-~v------~~~~~~~I~~~-----------~~~--~~ad~lVlPGGa~~~~~~~L~~~g-~~~i 70 (114)
T cd03144 12 PGSLKHLAELLRLYL-AV------STVTADELAVG-----------PWE--SKTALLVVPGGADLPYCRALNGKG-NRRI 70 (114)
T ss_pred HHHHHHHHHHHhhcc-ce------eeecHHHHhcC-----------chh--hCCCEEEECCCChHHHHHHHHhhC-cHHH
Confidence 346677788887754 22 23555554322 233 589999999964332 1235 7888
Q ss_pred HHHHHcCCcEEEehHHHHHH
Q 012331 385 KYAREHRIPYLGICLGMQVA 404 (466)
Q Consensus 385 k~are~~iPvLGICLGmQll 404 (466)
+.+.+++.|+||||+|-=+.
T Consensus 71 ~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 71 RNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred HHHHHCCCcEEEEecCccce
Confidence 88888999999999998766
No 103
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.82 E-value=6.6e-05 Score=89.16 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=61.8
Q ss_pred CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCC--
Q 012331 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG-- 373 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG-- 373 (466)
.++||+|+- +-|.. .-.....||+.+|+++.. .|+. ++.... ..|.+++||++||||+
T Consensus 1036 ~~pkVaVl~-~pGtN-~~~e~~~Af~~aGf~~~~----V~~~--dl~~~~------------~~L~~~~glv~pGGFSyG 1095 (1307)
T PLN03206 1036 SKPKVAIIR-EEGSN-GDREMAAAFYAAGFEPWD----VTMS--DLLNGR------------ISLDDFRGIVFVGGFSYA 1095 (1307)
T ss_pred CCCeEEEEE-CCCCC-CHHHHHHHHHHcCCceEE----EEee--eccccc------------ccccceeEEEEcCcCCCc
Confidence 468999986 53432 556778999999998743 2222 332211 3478999999999994
Q ss_pred CC-C-c----------hhHHHHHHHHH-HcCCcEEEehHHHHHHHH
Q 012331 374 NR-G-V----------QGKILAAKYAR-EHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 374 ~r-g-~----------eG~i~aIk~ar-e~~iPvLGICLGmQllai 406 (466)
|. + - ....++++.+. +.+.++||||.|+|+|+-
T Consensus 1096 D~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~ 1141 (1307)
T PLN03206 1096 DVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMAL 1141 (1307)
T ss_pred cccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHH
Confidence 42 1 1 12344555655 458999999999999984
No 104
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.71 E-value=0.00012 Score=87.25 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=61.4
Q ss_pred CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC
Q 012331 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r 375 (466)
.++||+|+- +-|.. .-.....||+.+|+++.. .|+ .++.... ..|.+++++++||||..-
T Consensus 1034 ~~pkv~il~-~pG~N-~~~e~~~Af~~aG~~~~~----v~~--~dl~~~~------------~~l~~~~~l~~~GGFS~g 1093 (1290)
T PRK05297 1034 ARPKVAILR-EQGVN-SHVEMAAAFDRAGFDAID----VHM--SDLLAGR------------VTLEDFKGLVACGGFSYG 1093 (1290)
T ss_pred CCCeEEEEE-CCCCC-CHHHHHHHHHHcCCCeEE----EEe--ecCcCCC------------CChhhCcEEEECCccCCc
Confidence 457999986 53432 556778999999998843 222 2332210 247899999999998652
Q ss_pred Cc--h------------hHHHHHHHHH-HcCCcEEEehHHHHHHHH
Q 012331 376 GV--Q------------GKILAAKYAR-EHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 376 g~--e------------G~i~aIk~ar-e~~iPvLGICLGmQllai 406 (466)
.. . ...++++.+. +.+.++||||.|+|+|+-
T Consensus 1094 D~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~ 1139 (1290)
T PRK05297 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSN 1139 (1290)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHH
Confidence 11 1 2234455544 678999999999999984
No 105
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.65 E-value=0.00017 Score=86.02 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=61.0
Q ss_pred CCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC
Q 012331 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r 375 (466)
.++||+|+- +-|.. .-.....||..+|+++.. .|+ .++.... ..|.+++|+++||||.+-
T Consensus 1054 ~~p~vail~-~pG~N-~~~e~~~Af~~aGf~~~~----v~~--~dl~~~~------------~~l~~~~~lv~~GGFSyg 1113 (1310)
T TIGR01735 1054 VRPKVAILR-EQGVN-GDREMAAAFDRAGFEAWD----VHM--SDLLAGR------------VHLDEFRGLAACGGFSYG 1113 (1310)
T ss_pred CCceEEEEE-CCCCC-CHHHHHHHHHHhCCCcEE----EEE--eccccCC------------cchhheeEEEEcCCCCCc
Confidence 457999987 53432 456778899999998643 222 2222111 247789999999998652
Q ss_pred Cc--------------hhHHHHHHHHH-HcCCcEEEehHHHHHHH
Q 012331 376 GV--------------QGKILAAKYAR-EHRIPYLGICLGMQVAV 405 (466)
Q Consensus 376 g~--------------eG~i~aIk~ar-e~~iPvLGICLGmQlla 405 (466)
.. ....++++.+. +.+.++||||.|+|+|+
T Consensus 1114 D~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~ 1158 (1310)
T TIGR01735 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLS 1158 (1310)
T ss_pred cchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHH
Confidence 11 12344555555 67899999999999999
No 106
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.60 E-value=8.2e-05 Score=70.96 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-----CchhHHHHHHH
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKY 386 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-----g~eG~i~aIk~ 386 (466)
++.-=.++|+.+|.+... |.. | ++|.++||+++|||-.+. ...|..+.++.
T Consensus 7 ~~~EH~~~l~~lg~~~~~------Vr~-----------~-------~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~ 62 (188)
T PF01174_consen 7 AFREHIRMLERLGAEVVE------VRT-----------P-------EDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLRE 62 (188)
T ss_dssp SHHHHHHHHHHTTSEEEE------E-S-----------G-------GGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHH
T ss_pred ChHHHHHHHHHcCCCeEE------eCC-----------H-------HHHccCCEEEECCCcHHHHHHHHHHcCCHHHHHH
Confidence 444446788888877632 322 1 578899999999997652 23578889999
Q ss_pred HHHcC-CcEEEehHHHHHHHH
Q 012331 387 AREHR-IPYLGICLGMQVAVI 406 (466)
Q Consensus 387 are~~-iPvLGICLGmQllai 406 (466)
+..++ +|+||.|-||-+|+-
T Consensus 63 ~~~~g~~Pv~GTCAGlIlLa~ 83 (188)
T PF01174_consen 63 FIRSGSKPVWGTCAGLILLAK 83 (188)
T ss_dssp HHHTT--EEEEETHHHHHHEE
T ss_pred HHHcCCCceeehhHHHHHhhh
Confidence 88887 999999999999983
No 107
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.60 E-value=0.00016 Score=55.44 Aligned_cols=75 Identities=28% Similarity=0.361 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCc----hhHHHHHHHHH
Q 012331 313 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV----QGKILAAKYAR 388 (466)
Q Consensus 313 y~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~----eG~i~aIk~ar 388 (466)
+.++.++++..++.+.+ +......... .....++|++++|||+..... ...++.+....
T Consensus 14 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~ 76 (92)
T cd03128 14 LASPLDALREAGAEVDV------VSPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA 76 (92)
T ss_pred eecHHHHHHhCCCEEEE------EeCCCCcccc-----------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHH
Confidence 35677888888865554 2222211100 023568999999999887522 56778888888
Q ss_pred HcCCcEEEehHHHHHH
Q 012331 389 EHRIPYLGICLGMQVA 404 (466)
Q Consensus 389 e~~iPvLGICLGmQll 404 (466)
+++.|++|+|.|+|++
T Consensus 77 ~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 77 AAGKPVLGICLGAQLL 92 (92)
T ss_pred HcCCEEEEEecccccC
Confidence 8899999999999874
No 108
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.35 E-value=0.0012 Score=60.15 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=37.9
Q ss_pred CCCEEEecCCCCCC---CchhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 362 ~~DGIllPGGfG~r---g~eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
++|+|+||||++.. ......+.++++.++++|+.+||-|.++|+-
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 107 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLIS 107 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHh
Confidence 58999999997742 2245788899999999999999999999984
No 109
>PHA03366 FGAM-synthase; Provisional
Probab=97.29 E-value=0.00093 Score=79.90 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=62.7
Q ss_pred CCCCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCC
Q 012331 294 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (466)
Q Consensus 294 ~~~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG 373 (466)
+..++||||+- +-|.. .-.....||..+|+++.. +.-+++... ..|.+++||++||||+
T Consensus 1025 ~~~~prVaIl~-~pG~N-~~~e~~~Af~~aGf~~~~------v~~~dL~~~-------------~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1025 PDKRHRVAVLL-LPGCP-GPHALLAAFTNAGFDPYP------VSIEELKDG-------------TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCCeEEEEE-CCCCC-CHHHHHHHHHHcCCceEE------EEeecCCCC-------------CccccceEEEEcCCCC
Confidence 34578999996 53432 556788999999998654 222333221 1278899999999997
Q ss_pred CCCc--------------hhHHHHHHHHH-HcCCcEEEehH-HHHHHH
Q 012331 374 NRGV--------------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (466)
Q Consensus 374 ~rg~--------------eG~i~aIk~ar-e~~iPvLGICL-GmQlla 405 (466)
.... ....++++.+. +.+.+.||||- |+|+|+
T Consensus 1084 ~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~ 1131 (1304)
T PHA03366 1084 AEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILF 1131 (1304)
T ss_pred CcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHH
Confidence 6311 22345566655 46899999997 999998
No 110
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.24 E-value=0.00094 Score=63.28 Aligned_cols=62 Identities=18% Similarity=0.097 Sum_probs=47.7
Q ss_pred ccCCCEEEecCCCCCC-------CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccc-ccccCCCCc
Q 012331 360 LKGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV-LNLRDANST 421 (466)
Q Consensus 360 L~~~DGIllPGGfG~r-------g~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v-~klk~a~s~ 421 (466)
..++||+||.|.|=.- -++...+.+.+++++..|+||||-|+|++..++++-. ..++..-++
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~G 129 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFG 129 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEE
Confidence 4679999999987652 1235677888999999999999999999998888864 555544333
No 111
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.16 E-value=0.0014 Score=78.00 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=60.7
Q ss_pred CCCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCC
Q 012331 295 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (466)
Q Consensus 295 ~~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~ 374 (466)
..++||||+- +-|.. .-.....||..+|+++.. +.-.++... ..+.+++|++++|||+.
T Consensus 927 ~~~p~VaIl~-~pG~N-~~~e~~~Af~~aGf~~~~------v~~~dl~~~-------------~~l~~f~glv~~Ggfsy 985 (1202)
T TIGR01739 927 DPRHQVAVLL-LPGQS-VPHGLLAALTNAGFDPRI------VSITELKKT-------------DFLDTFSGLIIGGASGT 985 (1202)
T ss_pred CCCCeEEEEe-CCCCC-CHHHHHHHHHHcCCceEE------EEeccCCCC-------------CchhheEEEEEcCcCCC
Confidence 3467899986 53432 556788999999998654 233333221 23568899999999876
Q ss_pred CCc--------------hhHHHHHHHHH-HcCCcEEEehH-HHHHHH
Q 012331 375 RGV--------------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (466)
Q Consensus 375 rg~--------------eG~i~aIk~ar-e~~iPvLGICL-GmQlla 405 (466)
... ....++++.+. +.+.+.||||- |+|+|+
T Consensus 986 ~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~ 1032 (1202)
T TIGR01739 986 LDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLL 1032 (1202)
T ss_pred CccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHH
Confidence 321 12334455555 45899999997 999998
No 112
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=97.12 E-value=0.0031 Score=57.45 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=37.6
Q ss_pred CCCEEEecCCCCCC---CchhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 362 ~~DGIllPGGfG~r---g~eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
++|+|+||||++.. .....++.++++.++++|+.+||-|-++|+-
T Consensus 62 ~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~ 109 (165)
T cd03134 62 DYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLIS 109 (165)
T ss_pred HCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHh
Confidence 68999999998543 2356788899999999999999999998873
No 113
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.73 E-value=0.0028 Score=61.82 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=41.2
Q ss_pred ccCCCEEEecCCCCC--------------CCchhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 360 LKGADGILVPGGFGN--------------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 360 L~~~DGIllPGGfG~--------------rg~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
..++|+|++|||+|. |..+...+.++++.++++|+..||-|-|+|+-+.
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 457999999999874 1235678889999999999999999999998765
No 114
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.63 E-value=0.002 Score=69.40 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=71.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~~ 81 (466)
|.|.| -|..|..||=..+|-+=++|..+||+|..-|- =.||= -=|||.||+|.
T Consensus 2 ~~iMv-~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI-------------- 54 (486)
T COG1492 2 KAIMV-QGTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI-------------- 54 (486)
T ss_pred CccEE-EeccCCcchhhhhhhhhHHHHhcCCccCCCch--------hhccc----ccEECCCCcEE--------------
Confidence 43444 36889999999999999999999999997773 23332 35889999885
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCC---------CeeEEcccc-------------------hHHHHHHHHHHhcccC
Q 012331 82 LTRDNNITTGKIYQSVIDKERKGDYLG---------KTVQVVPHI-------------------TDEIQDWIERVAMIPV 133 (466)
Q Consensus 82 l~~~~n~t~gkiy~~vi~ker~g~ylg---------~tvqviPHi-------------------t~ei~~~i~~~~~~pv 133 (466)
-.+|.+|..=...+.--|-. .+-|||=|= -.++++.+.++
T Consensus 55 -------graQ~~QA~Aa~i~p~v~mNPvLLKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l----- 122 (486)
T COG1492 55 -------GRAQALQALAAGIEPSVHMNPVLLKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERL----- 122 (486)
T ss_pred -------ehhhhHHHHHcCCCCccccCCEEEeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 23455555544443333311 245665432 12334444444
Q ss_pred CCCCCCCcEEEEeeCccccc
Q 012331 134 DGKEGPVDVCVIELGGTIGD 153 (466)
Q Consensus 134 d~~~~~~d~~i~EigGtvGd 153 (466)
....|+|++|--|+-..
T Consensus 123 ---~~~~d~Vv~EGAGSpaE 139 (486)
T COG1492 123 ---DREYDVVVIEGAGSPAE 139 (486)
T ss_pred ---hhcccEEEEecCCChhh
Confidence 35789999999998644
No 115
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.57 E-value=0.0041 Score=60.62 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=44.0
Q ss_pred ccCCCEEEecCCCCCC--------------CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHh--ccccccc
Q 012331 360 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNL 415 (466)
Q Consensus 360 L~~~DGIllPGGfG~r--------------g~eG~i~aIk~are~~iPvLGICLGmQllaia~--Gr~v~kl 415 (466)
+.++|+|++|||++.. ..+..++.++.+.++++|+.+||-|-++|+-+. |+++...
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~kGr~vT~~ 151 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILGEGVEVTIG 151 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhccCCeEEcc
Confidence 4579999999998741 134578889999999999999999999998766 4555443
No 116
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.53 E-value=0.015 Score=51.85 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=60.5
Q ss_pred EEEEEeccCCchh-hHHHHHHHHHHcCCceeEE-eEEEEeeCCCcccccccCCchhhHHHHHHc--cCCCEEEecCCCCC
Q 012331 299 RIAMVGKYTGLSD-AYLSILKALLHASVDLRKK-LVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (466)
Q Consensus 299 ~IaIVgkY~g~~D-ay~SI~~aL~~aG~~~~v~-v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIllPGGfG~ 374 (466)
+|+++- |.++.. .+....+.|+.+++++.+- .+-..+.++.- ... .+. ...+.. .++|.|+||||.+.
T Consensus 3 ~v~ill-~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g--~~i--~~~---~~l~~~~~~~~D~liVpGg~~~ 74 (142)
T cd03132 3 KVGILV-ADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDG--KTL--EVD---QTYAGAPSVLFDAVVVPGGAEA 74 (142)
T ss_pred EEEEEE-cCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCC--cEE--ecc---eeecCCChhhcCEEEECCCccC
Confidence 577765 555543 5567889999998776541 00001111110 000 000 001122 25899999998765
Q ss_pred ----CCchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 375 ----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 375 ----rg~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
+.....++.++.+.++++|+.+||-|-.+|+
T Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La 109 (142)
T cd03132 75 AFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLE 109 (142)
T ss_pred HHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHH
Confidence 2335678888998889999999999999888
No 117
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.50 E-value=0.0084 Score=56.58 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=58.1
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCce--eEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDL--RKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~--~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r- 375 (466)
.|+++. ++.++.-=.+-+++.-++. .+++++..+.. | +++.++||+++|||-...
T Consensus 13 VIGVLA----LQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT-----------~-------~D~aq~DaLIIPGGEST~m 70 (226)
T KOG3210|consen 13 VIGVLA----LQGAFIEHVNHVEKCIVENRYEIKLSVMTVKT-----------K-------NDLAQCDALIIPGGESTAM 70 (226)
T ss_pred EEeeee----hhhHHHHHHHHHHHhhccCcceEEEEEEeecC-----------H-------HHHhhCCEEEecCCchhHH
Confidence 466654 2336655455555444444 55555555532 1 678999999999997763
Q ss_pred ----CchhHHHHHHHHHHcC-CcEEEehHHHHHHHHHhc
Q 012331 376 ----GVQGKILAAKYAREHR-IPYLGICLGMQVAVIEFA 409 (466)
Q Consensus 376 ----g~eG~i~aIk~are~~-iPvLGICLGmQllaia~G 409 (466)
...|....+..+..+. +|+.|.|.||-+++-.+-
T Consensus 71 slia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~ 109 (226)
T KOG3210|consen 71 SLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQLS 109 (226)
T ss_pred HHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhhc
Confidence 2245555566666666 999999999999885443
No 118
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.48 E-value=0.0038 Score=58.16 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=38.0
Q ss_pred CCCEEEecCCCCCC---CchhHHHHHHHHHHcCCcEEEehHHHHHHHHH
Q 012331 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 362 ~~DGIllPGGfG~r---g~eG~i~aIk~are~~iPvLGICLGmQllaia 407 (466)
.+|+|+||||++.. ........++.+.++++|+.|||.|.|+|+-+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 57999999998642 22456788899989999999999999998853
No 119
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.33 E-value=0.011 Score=58.56 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=72.1
Q ss_pred hHHHHHHHHhhhcCCCCCeEEEEEeccCC---chhhH-HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHH
Q 012331 280 LLKEWTSRAEICDGLHEPVRIAMVGKYTG---LSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKA 355 (466)
Q Consensus 280 ~l~~W~~lv~~v~~~~~~v~IaIVgkY~g---~~Day-~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~ 355 (466)
-+..|..+...+-. +..+|++|. +.. ..+.| .+..++++..|+++.. ++.. + .
T Consensus 16 ~l~~~~~~~~~~~~--~~~~v~fIP-tAs~~~~~~~y~~~~~~af~~lG~~v~~------l~~~--~------------d 72 (233)
T PRK05282 16 YLEHALPLIAELLA--GRRKAVFIP-YAGVTQSWDDYTAKVAEALAPLGIEVTG------IHRV--A------------D 72 (233)
T ss_pred hHHHHHHHHHHHHc--CCCeEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCEEEE------eccc--h------------h
Confidence 45666666665532 346899997 632 23444 3578899999987543 2211 0 0
Q ss_pred HHHHccCCCEEEecCCCCCC-----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhc
Q 012331 356 AWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFA 409 (466)
Q Consensus 356 ~~~~L~~~DGIllPGGfG~r-----g~eG~i~aIk~are~~iPvLGICLGmQllaia~G 409 (466)
..+.|.++|+|+++||--.+ .-.|..++++.+.++++|+.|.|.|.-+++-...
T Consensus 73 ~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 73 PVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred hHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 12568899999999985432 1246788888888999999999999988775444
No 120
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=96.14 E-value=0.032 Score=52.09 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=62.8
Q ss_pred eEEEEEeccCCchhh-HHHHHHHHHHcCCceeEEeEEEEeeCCCccc-cc-ccCCchhhHHHHHHc--cCCCEEEecCC-
Q 012331 298 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDLED-AT-EKENPDAYKAAWKLL--KGADGILVPGG- 371 (466)
Q Consensus 298 v~IaIVgkY~g~~Da-y~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~-~~-~~~~p~~y~~~~~~L--~~~DGIllPGG- 371 (466)
.+|+++- +.++.+. +..-.+.|+.+|..+.+. ..+........ .. ....+ +...+.. .++|+|++|||
T Consensus 3 ~~i~i~~-~~g~e~~E~~~p~~~l~~ag~~v~~~--~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~ydal~ipGG~ 76 (188)
T COG0693 3 KKIAILL-ADGFEDLELIVPYDVLRRAGFEVDVA--SPEGKGKSVTSKRGGLVVAD---DKAFDDADAADYDALVIPGGD 76 (188)
T ss_pred ceeEEEe-cCcceehhHhHHHHHHHHCCCeEEEE--ecCCCcceeecccCcceEec---ccccccCCHhHCCEEEECCCc
Confidence 4677665 5566553 345578899999886542 11110001100 00 00000 0011223 48999999999
Q ss_pred CCCC---CchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 372 FGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 372 fG~r---g~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
.|.. ..+..++.++++.++++|+..||-|-|+|+
T Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~ 113 (188)
T COG0693 77 HGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLA 113 (188)
T ss_pred cchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHh
Confidence 7764 225688899999999999999999999988
No 121
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.13 E-value=0.027 Score=52.34 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=39.9
Q ss_pred HccCCCEEEecCCCCCC---CchhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 359 LLKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 359 ~L~~~DGIllPGGfG~r---g~eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
...++|.+++|||.+.. ..+..++.++.+..++.|+.+||-|-++|+-
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 111 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAE 111 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 45678999999997753 3456788899888899999999999998874
No 122
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=96.07 E-value=0.031 Score=54.40 Aligned_cols=169 Identities=17% Similarity=0.130 Sum_probs=99.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~ 80 (466)
||-|||||- =.+.||=.+++.|.+.|+.+|++|..+| |.++|-.. ++ ++..|-|.-.+.++.+.
T Consensus 2 ~~~ifIt~t-~t~vGKT~vt~~L~~~l~~~g~~v~~~K-------------Pi~~g~~~-~~-~~~~~~D~~~l~~~~~~ 65 (231)
T PRK12374 2 LKRFFITGT-DTSVGKTVVSRALLQALASQGKTVAGYK-------------PVAKGSKE-TP-EGLRNKDALVLQSVSSI 65 (231)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEC-------------ccccCCcc-CC-CCCchHHHHHHHHhcCC
Confidence 467899874 4889999999999999999999998877 88888532 22 23345444445555555
Q ss_pred CCCCCC-c---ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc--c
Q 012331 81 KLTRDN-N---ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--I 154 (466)
Q Consensus 81 ~l~~~~-n---~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGd--i 154 (466)
+.+-+. | ++.. ...++.+ +.+ -.++|.+++++++ .+.|++|||=-|-+.. -
T Consensus 66 ~~~~~~~~p~~~~~~------~a~~~~~-------~~i--~~~~i~~~~~~l~--------~~~D~VlVEGaGgl~~p~~ 122 (231)
T PRK12374 66 ELPYEAVNPIALSEE------ESSVAHS-------CPI--NYTLMSNGLANLS--------EKVDHVVVEGTGGWRSLMN 122 (231)
T ss_pred CCCHHhccCeecCCC------cChHHcC-------CcC--CHHHHHHHHHHHH--------hhCCEEEEECCCCcceecc
Confidence 433111 1 1111 1111222 111 2357888887764 3689999997662221 0
Q ss_pred CcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCC
Q 012331 155 ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (466)
Q Consensus 155 Es~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~ 221 (466)
+...+.+.++++ + --+..|- + ...|. .--|.-+++.+++.|+..-++|+....+
T Consensus 123 ~~~~~~d~~~~~----~-~pvilV~----~--~~lg~--in~~lLt~~~l~~~~~~~~gvV~N~~~~ 176 (231)
T PRK12374 123 DLRPLSEWVVQE----Q-LPVLMVV----G--IQEGC--INHALLTAQAIANDGLPLIGWVANRINP 176 (231)
T ss_pred CcccHHHHHHHh----C-CCEEEEE----C--CCcCh--HHHHHHHHHHHHhCCCcEEEEEEeCccC
Confidence 112344554443 2 1122221 0 01233 2356667788899999999999976543
No 123
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=95.90 E-value=0.02 Score=54.78 Aligned_cols=167 Identities=19% Similarity=0.208 Sum_probs=92.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~~l~ 83 (466)
||||| .=++.||=.+++.|.+.|+.+|++|...| |.++|--... .|=|.-.+.++.+....
T Consensus 2 i~I~~-t~t~~GKT~vs~~L~~~l~~~g~~v~~~K-------------Pv~~g~~~~~-----~~~d~~~~~~~~~~~~~ 62 (222)
T PRK00090 2 LFVTG-TDTDVGKTVVTAALAQALREAGYSVAGYK-------------PVQSGCEETD-----RNGDALALQRLSGLPLD 62 (222)
T ss_pred EEEEe-CCCCcCHHHHHHHHHHHHHHcCCceEEEe-------------eEecCCCCCC-----CcHHHHHHHHHcCCCCC
Confidence 56765 46899999999999999999999998865 6666631110 12233335555544322
Q ss_pred CCCcccchHhhHHH----HhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCcccccc--Ccc
Q 012331 84 RDNNITTGKIYQSV----IDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI--ESM 157 (466)
Q Consensus 84 ~~~n~t~gkiy~~v----i~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdi--Es~ 157 (466)
. ...++-.|+.. +..++.| . +--.+.|++.+.+++ .++|+||||-.|.+.+- .+.
T Consensus 63 ~--~~~~~~~~~~~~sp~~a~~~~~----~-----~~~~~~i~~~~~~l~--------~~~D~viIEg~gg~~~~~~~~~ 123 (222)
T PRK00090 63 Y--EDVNPYRFEEPLSPHLAAALEG----V-----AIDLEKISAALRRLA--------QQYDLVLVEGAGGLLVPLTEDL 123 (222)
T ss_pred h--hhcCceeeCCCCCHHHHHHHhC----C-----CCCHHHHHHHHHHHH--------hhCCEEEEECCCceeccCCCCC
Confidence 1 11122222111 1111221 1 123366788887764 36899999977765431 111
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCC
Q 012331 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (466)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~ 221 (466)
-..+-+++ .+ -.++.+.- +.+ +. ...+.-+++.+++.|+...++|+....+
T Consensus 124 ~~adl~~~----l~-~pvilV~~---~~~---~~--i~~~~~~i~~l~~~~~~i~gvIlN~~~~ 174 (222)
T PRK00090 124 TLADLAKQ----LQ-LPVILVVG---VKL---GC--INHTLLTLEAIRARGLPLAGWVANGIPP 174 (222)
T ss_pred cHHHHHHH----hC-CCEEEEEC---CCC---cH--HHHHHHHHHHHHHCCCCeEEEEEccCCC
Confidence 22223333 32 12333331 111 22 2246777888888899998988875443
No 124
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=95.88 E-value=0.075 Score=50.06 Aligned_cols=98 Identities=11% Similarity=0.131 Sum_probs=58.8
Q ss_pred EEEEEeccCCchh-hHHHHHHHHHHcCCceeEEeEEE-----EeeCCCcccccccCCchhhHHHHHHc--cCCCEEEecC
Q 012331 299 RIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVID-----WIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPG 370 (466)
Q Consensus 299 ~IaIVgkY~g~~D-ay~SI~~aL~~aG~~~~v~v~i~-----~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIllPG 370 (466)
||+|+= |.++.+ -+....+.|+.+|+++.+- .+. .+.+.. .-.. .| +..++.+ .++|.|++||
T Consensus 4 ~~~il~-~~g~~~~e~~~p~~~l~~ag~~v~~~-s~~~~~~~~v~ss~--G~~v--~~---d~~l~~~~~~~~D~l~ipG 74 (196)
T PRK11574 4 SALVCL-APGSEETEAVTTIDLLVRGGIKVTTA-SVASDGNLEITCSR--GVKL--LA---DAPLVEVADGDFDVIVLPG 74 (196)
T ss_pred eEEEEe-CCCcchhhHhHHHHHHHHCCCeEEEE-EccCCCCceEEcCC--CCEE--eC---CCCHHHCCCCCCCEEEECC
Confidence 566664 556655 3445678888888765541 110 011110 0000 00 1112333 4689999999
Q ss_pred CCCC-C---CchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 371 GFGN-R---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 371 GfG~-r---g~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
|++. . ..+..+++++.+.++++|+.+||-|-.++.
T Consensus 75 G~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 75 GIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred CCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 9753 2 234578889999999999999999999754
No 125
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.81 E-value=0.048 Score=50.33 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=38.5
Q ss_pred cCCCEEEecCCCCCC--CchhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 361 KGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 361 ~~~DGIllPGGfG~r--g~eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
.++|.++||||+... ..+...+.++++.+++.|+.+||-|-++|+-
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 106 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALAR 106 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 468999999997532 3356788899999999999999999999885
No 126
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.67 E-value=0.079 Score=48.62 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=78.7
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCC
Q 012331 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDN 86 (466)
Q Consensus 7 tggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~~l~~~~ 86 (466)
..+--.|.||=.+|+.|+..|.++|+||-++-.||--.. . | +++
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~----~----~--------------------~~~-------- 47 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS----I----P--------------------KMW-------- 47 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC----c----h--------------------HHH--------
Confidence 334457899999999999999999999999999885421 0 1 000
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHh
Q 012331 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQF 166 (466)
Q Consensus 87 n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~ea~rq~ 166 (466)
| -|...+-+++++.... ...+|+|||-.++.++|. .+.+++
T Consensus 48 ---------------~-----------~~~~~~~l~~~~~~~~-------~~~yD~VIiD~pp~~~~~----~~~~~~-- 88 (169)
T cd02037 48 ---------------R-----------GPMKMGAIKQFLTDVD-------WGELDYLVIDMPPGTGDE----HLTLAQ-- 88 (169)
T ss_pred ---------------h-----------CcchHHHHHHHHHHhh-------cCCCCEEEEeCCCCCcHH----HHHHHh--
Confidence 0 0122344555555543 257999999999988761 122221
Q ss_pred hhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecC
Q 012331 167 SYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRST 219 (466)
Q Consensus 167 ~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~ 219 (466)
.- ..+..++|. ..+..--.-+...++.+++.++...++|+.-.
T Consensus 89 ---~~-----~ad~viiV~--~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~ 131 (169)
T cd02037 89 ---SL-----PIDGAVIVT--TPQEVALDDVRKAIDMFKKVNIPILGVVENMS 131 (169)
T ss_pred ---cc-----CCCeEEEEE--CCchhhHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 00 112223332 12334444556677788888998888877544
No 127
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=95.62 E-value=0.078 Score=48.82 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=59.8
Q ss_pred EEEEEeccCCchh-hHHHHHHHHHHcCCceeEEeEEEEeeCC-Ccccc-cccCCchhhHHHHHH--ccCCCEEEecCCCC
Q 012331 299 RIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPAC-DLEDA-TEKENPDAYKAAWKL--LKGADGILVPGGFG 373 (466)
Q Consensus 299 ~IaIVgkY~g~~D-ay~SI~~aL~~aG~~~~v~v~i~~i~s~-~l~~~-~~~~~p~~y~~~~~~--L~~~DGIllPGGfG 373 (466)
||+++- |.++.+ .+....+.|..+++.+.+. +...+.. ..... ...-.| +..++. ..++|.|+||||.+
T Consensus 1 ~v~il~-~~gf~~~e~~~~~~~l~~a~~~~~~~--~~s~~g~~~v~~~~g~~v~~---~~~~~~~~~~~~D~l~v~Gg~~ 74 (179)
T TIGR01383 1 KVLVPL-APGFEEMEAVITVDVLRRAGIKVTVA--IVGLNGKLPVKGSRGVKILA---DASLEDVDLEEFDAIVLPGGMP 74 (179)
T ss_pred CEEEEe-cCCchHHHHHHHHHHHHHCCCEEEEE--EeccCCCcceEcCCCCEEeC---CCCHHHCCcccCCEEEECCCch
Confidence 355554 555554 4456788898888655431 1111111 11100 000001 011233 45799999999864
Q ss_pred C----CCchhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 374 N----RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 374 ~----rg~eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
. +..+..++.++.+.++++|+.+||-|-.+|+-
T Consensus 75 ~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 111 (179)
T TIGR01383 75 GAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLA 111 (179)
T ss_pred HHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHh
Confidence 2 12345778888888999999999999999884
No 128
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=95.53 E-value=0.079 Score=47.76 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=38.6
Q ss_pred cCCCEEEecCCCC-CC---CchhHHHHHHHHHHcCCcEEEehHHHHHHHHH
Q 012331 361 KGADGILVPGGFG-NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 361 ~~~DGIllPGGfG-~r---g~eG~i~aIk~are~~iPvLGICLGmQllaia 407 (466)
.++|.++||||++ .. .....++.++.+.++++++.+||-|-.+|+-+
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 5799999999984 22 33557888898889999999999999998853
No 129
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=95.33 E-value=0.03 Score=55.16 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=40.2
Q ss_pred ccCCCEEEecCCCCC----CCchhHHHHHHHHHHcCCcEEEehHHHHHHHHH
Q 012331 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 360 L~~~DGIllPGGfG~----rg~eG~i~aIk~are~~iPvLGICLGmQllaia 407 (466)
..++|+|++|||.|. +..+...+.++++.++++|+..||-|-++|+-+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 357999999999874 244567888999999999999999999988755
No 130
>PRK13768 GTPase; Provisional
Probab=95.23 E-value=0.13 Score=50.99 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=34.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+.|+|+|- +|.||-..+..+...|+.+|.+|.++.+||-
T Consensus 3 ~~i~v~G~--~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGT--AGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECC--CCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 55666665 9999999999999999999999999999984
No 131
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=94.87 E-value=0.021 Score=51.61 Aligned_cols=46 Identities=28% Similarity=0.418 Sum_probs=36.2
Q ss_pred cCCCEEEecCCCCC----CCc-hhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 361 KGADGILVPGGFGN----RGV-QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 361 ~~~DGIllPGGfG~----rg~-eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
.++|+|++|||.+. +.. +-..+.++++.++++|+.+||-|-.+|+-
T Consensus 36 ~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~ 86 (147)
T PF01965_consen 36 SDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAA 86 (147)
T ss_dssp GGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHH
T ss_pred hhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhc
Confidence 46999999999883 223 56788899999999999999999977763
No 132
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=94.75 E-value=0.15 Score=50.23 Aligned_cols=183 Identities=20% Similarity=0.286 Sum_probs=116.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~ 80 (466)
||-+|||| .=-++||=+++|.|...|+.+|++|...| |.|=|. +....+=|.=.+.|+.++
T Consensus 2 ~~~~fVtG-TDT~VGKTv~S~aL~~~l~~~g~~~~~~K-------------PVqsG~-----~~~~~~~D~~~l~~~~~~ 62 (223)
T COG0132 2 MKRFFVTG-TDTGVGKTVVSAALAQALKQQGYSVAGYK-------------PVQTGS-----EETAENSDALVLQRLSGL 62 (223)
T ss_pred CceEEEEe-CCCCccHHHHHHHHHHHHHhCCCeeEEEC-------------ceeeCC-----CCCCCCchHHHHHHhcCC
Confidence 68899997 45789999999999999999999998887 777765 111114677778888888
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEe-eCccccc-cCcch
Q 012331 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIE-LGGTIGD-IESMP 158 (466)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~E-igGtvGd-iEs~p 158 (466)
.++. -.++--.|+.-..--..-+.-|+++. .++|..+..+. ..++|++||| -||=--= -|...
T Consensus 63 ~~~~--~~~~py~f~~P~sPhlAa~~eg~~I~-----~~~l~~~l~~l--------~~~~d~vlVEGAGGl~vPl~~~~~ 127 (223)
T COG0132 63 DLSY--ELINPYRFKEPLSPHLAAELEGRTID-----LEKLSQGLRQL--------LKKYDLVLVEGAGGLLVPLTEEYT 127 (223)
T ss_pred Cccc--ccccceecCCCCCcHHHHhhcCCccc-----HHHHHHHHHhh--------hcccCEEEEeCCCceeeecCCccc
Confidence 7652 12222233322222222222255532 24444444444 3478999999 5553211 12367
Q ss_pred HHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCCCCcchhccc
Q 012331 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKL 230 (466)
Q Consensus 159 f~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~l~s~~r~Ki 230 (466)
|..=++|++..+ ++.++ + .+++ .- -|=-|++.+++.|+..-++|.-+..+.+.+.-...
T Consensus 128 ~~D~~~~~~lpv----ILV~~-~---~LGt---IN--HtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~ 186 (223)
T COG0132 128 FADLAVQLQLPV----ILVVG-I---KLGT---IN--HTLLTVEALRARGLPLAGWVANGINPELDHYAEIN 186 (223)
T ss_pred HHHHHHHcCCCE----EEEec-C---CccH---HH--HHHHHHHHHHHCCCCEEEEEEccCCCchhHHHHHH
Confidence 888888888653 22222 2 2322 11 46668899999999999999999888777655444
No 133
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.71 E-value=0.089 Score=42.02 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=30.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|+++|.- |.||-.+++.+...|++.|++|..++
T Consensus 2 ~~~~g~~--G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6677666 99999999999999999999999888
No 134
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.67 E-value=0.098 Score=48.25 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=37.2
Q ss_pred ccCCCEEEecCCCCCC---CchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 360 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 360 L~~~DGIllPGGfG~r---g~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
...+|.|+||||.+.. .....++.++.+.++++|+.+||-|.-+|+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La 108 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLA 108 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHH
Confidence 4579999999997653 234577888888889999999999987766
No 135
>PRK04155 chaperone protein HchA; Provisional
Probab=94.63 E-value=0.05 Score=55.38 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=38.8
Q ss_pred ccCCCEEEecCCCCC----CCchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 360 L~~~DGIllPGGfG~----rg~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
..++|+|++|||.|. +..+...+.++++.++++|+..||-|-++|.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALL 194 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 357999999999875 3446678889999999999999999998655
No 136
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=94.59 E-value=0.23 Score=47.63 Aligned_cols=108 Identities=19% Similarity=0.083 Sum_probs=66.1
Q ss_pred HHHHHHhhhcCCCCCeEEEEEeccCCchh-hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHcc
Q 012331 283 EWTSRAEICDGLHEPVRIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK 361 (466)
Q Consensus 283 ~W~~lv~~v~~~~~~v~IaIVgkY~g~~D-ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~ 361 (466)
.++.+..... +...+|+++..-....+ ......++++..|+..... ..++. . .++ ...+.|.
T Consensus 17 ~~~~~~~~~~--~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~---~~~~~--~------~~~----~~~~~l~ 79 (210)
T cd03129 17 ILQDFLARAG--GAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHL---LLIDT--A------NDP----DVVARLL 79 (210)
T ss_pred HHHHHHHHcC--CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEE---eccCC--C------CCH----HHHHHHh
Confidence 3455555443 23568999972122122 3345788899999886542 12211 1 011 2336789
Q ss_pred CCCEEEecCCCCCC---Cc--hhHHHHHHHHHHcCCcEEEehHHHHHHHHH
Q 012331 362 GADGILVPGGFGNR---GV--QGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 362 ~~DGIllPGGfG~r---g~--eG~i~aIk~are~~iPvLGICLGmQllaia 407 (466)
++|+|+++||--.+ .+ .+..+++.....++.|+.|.|-|..+++-.
T Consensus 80 ~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 80 EADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred hCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 99999999964322 11 235556665555899999999999999943
No 137
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.25 E-value=0.29 Score=50.95 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=47.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-------CCCCCCc-cccceEEEccCCcc
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-------DAGTMSP-FEHGEVFVLDDGGE 66 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~-------d~gtmsp-~~hgEvfv~~dg~e 66 (466)
.|-|||- +|-||=..+..+...|+.+|++|.++.+||.-.+ |.-.|.. .+|..||+-..++.
T Consensus 58 ~igi~G~--~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~ 127 (332)
T PRK09435 58 RIGITGV--PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSS 127 (332)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCc
Confidence 5677775 8999999999999999999999999999998665 4444542 35555666555443
No 138
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=94.17 E-value=0.068 Score=51.94 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=39.2
Q ss_pred cCCCEEEecCCCCCC----CchhHHHHHHHHHHcCCcEEEehHHHHHHHHH
Q 012331 361 KGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (466)
Q Consensus 361 ~~~DGIllPGGfG~r----g~eG~i~aIk~are~~iPvLGICLGmQllaia 407 (466)
.++|+|+||||++.. ..+...+.++.+.++++|+.+||-|-++|+-+
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 468999999998642 33567888999999999999999999988753
No 139
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=94.09 E-value=0.083 Score=52.06 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=38.6
Q ss_pred cCCCEEEecCCCCC----CCchhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 361 KGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 361 ~~~DGIllPGGfG~----rg~eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
.++|+|++|||.|. +..+...+.++++.++++|+-.||-|-+++.-
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~ 144 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLA 144 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHh
Confidence 57999999999775 34466788899999999999999999986653
No 140
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=94.06 E-value=0.078 Score=55.85 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=37.0
Q ss_pred ccCCCEEEecCCCCCC---CchhH-HHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 360 LKGADGILVPGGFGNR---GVQGK-ILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 360 L~~~DGIllPGGfG~r---g~eG~-i~aIk~are~~iPvLGICLGmQlla 405 (466)
..+++-+|+|||...+ .+.+. .+.||.+.+++-=+||||.|--+..
T Consensus 47 ~~~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 47 QSKCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred ccCCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 3578999999998654 34444 7889999999999999999987665
No 141
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=94.03 E-value=0.4 Score=54.35 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=33.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
||-|||+| .=++.||=.+++.|.+.|+.+|++|...|
T Consensus 2 ~k~l~I~~-T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAP-TGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 57788884 56899999999999999999999999999
No 142
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.95 E-value=0.085 Score=49.41 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=38.4
Q ss_pred HccCCCEEEecCCCCCC------CchhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 359 LLKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 359 ~L~~~DGIllPGGfG~r------g~eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
...++|.|+||||.+.. ..+-.++.++.+.+++.++.+||-|..+|+-
T Consensus 66 ~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 119 (195)
T cd03138 66 DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAE 119 (195)
T ss_pred ccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHH
Confidence 34578999999986642 2345678888888999999999999998873
No 143
>PRK14974 cell division protein FtsY; Provisional
Probab=93.65 E-value=1.1 Score=46.62 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=35.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+.|.++| ..|.||=.+++.++..|+.+|++|.++-.|+|
T Consensus 141 ~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4678888 88999999999999999999999999888877
No 144
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=93.50 E-value=1.4 Score=42.46 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=34.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|.|.|+++ =-|.||=.+|+.++..|..+|+||-++-+||-
T Consensus 2 ~ii~v~s~-kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVITSG-KGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred eEEEEecC-CCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 55666554 46889999999999999999999999999984
No 145
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=93.37 E-value=0.35 Score=47.96 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|++|++|. .|.||=.+|++++..+...|.||-++-.||-
T Consensus 1 ~~~~~~gk--gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGK--GGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECC--CCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 57888886 8999999999999999999999999999994
No 146
>PRK10867 signal recognition particle protein; Provisional
Probab=93.18 E-value=1.4 Score=47.42 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~-g~~v~~~K~DpY 42 (466)
+.|+++| ..|.||=.+++.++..|+.+ |.+|.++-+|+|
T Consensus 101 ~vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4677887 89999999999999999998 999999999997
No 147
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.14 E-value=0.63 Score=47.26 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=38.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
+++|.|+|. .|-||=..+..++..|..+|++|.++.+||+-+.
T Consensus 34 ~~~i~i~G~--~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~ 76 (300)
T TIGR00750 34 AHRVGITGT--PGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF 76 (300)
T ss_pred ceEEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 367888875 8999999999999999999999999999997544
No 148
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=93.10 E-value=0.15 Score=47.47 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=38.7
Q ss_pred ccCCCEEEecCCCCCC--CchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 360 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 360 L~~~DGIllPGGfG~r--g~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
..++|.++||||++.. ..+..++.++.+.+++..+.+||-|..+|+
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La 109 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLA 109 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHH
Confidence 4578999999997653 345678899998899999999999999877
No 149
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=92.93 E-value=0.19 Score=50.25 Aligned_cols=79 Identities=19% Similarity=0.358 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchhHH--HHHHHHHH--
Q 012331 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKI--LAAKYARE-- 389 (466)
Q Consensus 314 ~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG~i--~aIk~are-- 389 (466)
.|.++.++.+|+++.- +++-.++++ ....++...||+++||--.++.--++ .......+
T Consensus 80 ASYVK~aEsgGARViP---li~nepEe~--------------lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~n 142 (340)
T KOG1559|consen 80 ASYVKLAESGGARVIP---LIYNEPEEI--------------LFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERN 142 (340)
T ss_pred HHHHHHHHcCCceEEE---EecCCcHHH--------------HHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhcc
Confidence 4678888888888742 111112111 12456778999999996556542221 11223333
Q ss_pred ---cCCcEEEehHHHHHHHHHhc
Q 012331 390 ---HRIPYLGICLGMQVAVIEFA 409 (466)
Q Consensus 390 ---~~iPvLGICLGmQllaia~G 409 (466)
.--|+.|||||+.+|.+-..
T Consensus 143 DaGehFPvyg~CLGFE~lsmiIS 165 (340)
T KOG1559|consen 143 DAGEHFPVYGICLGFELLSMIIS 165 (340)
T ss_pred CCccccchhhhhhhHHHHHHHHh
Confidence 24799999999999887554
No 150
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.82 E-value=2.4 Score=42.74 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=36.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+.|.++| ..|.||=.+++.++..|+..|++|.++-.|+|
T Consensus 73 ~vi~l~G--~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVG--VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 5788885 89999999999999999999999999999995
No 151
>PRK11249 katE hydroperoxidase II; Provisional
Probab=92.60 E-value=0.47 Score=54.28 Aligned_cols=103 Identities=19% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCeEEEEEeccCCchh-hHHHHHHHHHHcCCceeEE-eEEEEeeCCCcccccccCCchhhHHHHHHc--cCCCEEEecCC
Q 012331 296 EPVRIAMVGKYTGLSD-AYLSILKALLHASVDLRKK-LVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGG 371 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~D-ay~SI~~aL~~aG~~~~v~-v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIllPGG 371 (466)
+..+|||+- +.++.+ .+..+.++|+.+|+.+.+. ...-.|.+..= ..+..+- .| ... ..+|+|+||||
T Consensus 596 ~gRKIaILV-aDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G--~~I~aD~-t~----~~~~Sv~FDAVvVPGG 667 (752)
T PRK11249 596 KGRKVAILL-NDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDG--TVLPIAA-TF----AGAPSLTFDAVIVPGG 667 (752)
T ss_pred cccEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCC--CEEecce-ee----ccCCccCCCEEEECCC
Confidence 346888886 656554 5667899999999866541 00001111110 0000000 00 111 25899999998
Q ss_pred CCCC----CchhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 372 FGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 372 fG~r----g~eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
.... .....+..++.+.++.+|+..||-|.++|+-
T Consensus 668 ~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaa 706 (752)
T PRK11249 668 KANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAA 706 (752)
T ss_pred chhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHh
Confidence 6442 2345788899999999999999999999993
No 152
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=92.18 E-value=0.21 Score=45.57 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=37.5
Q ss_pred ccCCCEEEecCCCC-C--CCchhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 360 LKGADGILVPGGFG-N--RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 360 L~~~DGIllPGGfG-~--rg~eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
..++|.|+||||++ . ...+..++.++.+..++.++.+||-|..+++-
T Consensus 59 ~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 108 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAE 108 (166)
T ss_dssp CSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHH
T ss_pred cccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhh
Confidence 56789999999999 2 23356778888888889999999999999983
No 153
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=92.14 E-value=0.093 Score=51.61 Aligned_cols=54 Identities=24% Similarity=0.202 Sum_probs=40.0
Q ss_pred cCCCEEEecCCCCCC------CchhHHHHHHHHHHcCCcEEEehHHHHHHHH----Hhcccccc
Q 012331 361 KGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI----EFARSVLN 414 (466)
Q Consensus 361 ~~~DGIllPGGfG~r------g~eG~i~aIk~are~~iPvLGICLGmQllai----a~Gr~v~k 414 (466)
.++|-+++.||-... ...-+-..++.+.++++|+|-||-|.|+|.. +.|.++-|
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~yY~~a~G~ri~G 114 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYYETASGTRIDG 114 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccceeecCCCcEeec
Confidence 578988888775442 2223556789999999999999999999986 44555544
No 154
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.92 E-value=0.94 Score=43.58 Aligned_cols=41 Identities=32% Similarity=0.495 Sum_probs=35.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
||.|.|+++ =.|.||=.+|+.++..|..+|+||-++-+||.
T Consensus 1 m~iI~v~s~-KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVGV-KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEeC-CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 566666543 45889999999999999999999999999996
No 155
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=91.83 E-value=0.99 Score=43.38 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=30.7
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 9 gv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+-=.|.||=.+|+.++..|..+|++|-++-+||.
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3346789999999999999999999999999994
No 156
>PHA02518 ParA-like protein; Provisional
Probab=91.72 E-value=0.68 Score=43.30 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=30.1
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 11 ~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
=-|.||=.+|+.|+..|..+|++|.++-+||.-
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 346799999999999999999999999999974
No 157
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.40 E-value=4.7 Score=43.47 Aligned_cols=144 Identities=19% Similarity=0.235 Sum_probs=88.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~~ 81 (466)
+.|.+.|- .|.||=.+++.|+..|..+|++|.++-.|||- +|..+-.
T Consensus 242 ~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R---iaAvEQL---------------------------- 288 (436)
T PRK11889 242 QTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IGTVQQL---------------------------- 288 (436)
T ss_pred cEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc---hHHHHHH----------------------------
Confidence 35667776 99999999999999999999999999999874 1111110
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 012331 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (466)
Q Consensus 82 l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~e 161 (466)
+.|.+ -+|-.|-++. -.+++.+.|..++. ..+.|+|||...|.-- -....++
T Consensus 289 ----------k~yae---------~lgipv~v~~-d~~~L~~aL~~lk~------~~~~DvVLIDTaGRs~--kd~~lm~ 340 (436)
T PRK11889 289 ----------QDYVK---------TIGFEVIAVR-DEAAMTRALTYFKE------EARVDYILIDTAGKNY--RASETVE 340 (436)
T ss_pred ----------HHHhh---------hcCCcEEecC-CHHHHHHHHHHHHh------ccCCCEEEEeCccccC--cCHHHHH
Confidence 01111 1343333222 23567777777652 2368999999888833 2344566
Q ss_pred HHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEe
Q 012331 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (466)
Q Consensus 162 a~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~R 217 (466)
.++++-....+..++++ +++ -.|.+-....++.++. +.++++|.-
T Consensus 341 EL~~~lk~~~PdevlLV-------LsA--Ttk~~d~~~i~~~F~~--~~idglI~T 385 (436)
T PRK11889 341 EMIETMGQVEPDYICLT-------LSA--SMKSKDMIEIITNFKD--IHIDGIVFT 385 (436)
T ss_pred HHHHHHhhcCCCeEEEE-------ECC--ccChHHHHHHHHHhcC--CCCCEEEEE
Confidence 66666555444433222 433 2333344566777766 556888875
No 158
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=91.25 E-value=1 Score=40.91 Aligned_cols=153 Identities=21% Similarity=0.274 Sum_probs=81.0
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCCccc
Q 012331 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNIT 89 (466)
Q Consensus 10 v~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~~l~~~~n~t 89 (466)
.-.+.||=.+++.|++.|+.+|+||-.+| |.+||-- . .|-|.-.-.+++.... +.+..
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k-------------P~~~~~~-----~--~d~d~~~i~~~~~~~~--~~~~~ 62 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK-------------PVQTGIE-----K--TNSDALLLQNISGTAL--DWDEV 62 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE-------------eeeeCCC-----C--CchHHHHHHHHcCCCC--chhcc
Confidence 46789999999999999999999998853 6667520 0 1222111112221111 11111
Q ss_pred chHhhH-----HHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH--H
Q 012331 90 TGKIYQ-----SVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE--A 162 (466)
Q Consensus 90 ~gkiy~-----~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~e--a 162 (466)
.+-.|. .+....+ + . |....+|++.+.+++ .++|++|||-.|.... |+.+ .
T Consensus 63 ~~~~~~~~~~p~~~~~~~-~----~-----~~~~~~i~~~~~~l~--------~~~D~viid~~g~~~~----~~~~~~~ 120 (166)
T TIGR00347 63 NPYAFALPLSPHIAADQE-G----R-----PIDLEELSKHLRTLE--------QKYDFVLVEGAGGLCV----PITEEYT 120 (166)
T ss_pred CCeeeCCCCChHHHHHHh-C----C-----CCCHHHHHHHHHHHH--------hcCCEEEEEcCCcccc----CCCCCCc
Confidence 110110 1111110 0 0 223346777777764 3689999999885432 2211 1
Q ss_pred HHHhhhhcCCCCEEEEEeeeeeeecC-CCccccCchhhhHHHhhcCCCcccEEEE
Q 012331 163 LGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (466)
Q Consensus 163 ~rq~~~~~g~~n~~~ih~t~vp~~~~-~~e~KtKptQhsvk~LrS~GI~pd~lV~ 216 (466)
..++-.+++-. +++|- .. .++ -.-++-+.+.|++.|+..-++|+
T Consensus 121 ~~dl~~~~~~~-vilV~-------~~~~~~--~~~~~~~~~~l~~~~~~i~gvv~ 165 (166)
T TIGR00347 121 TADLIKLLQLP-VILVV-------RVKLGT--INHTLLTVEHARQTGLTLAGVIL 165 (166)
T ss_pred HHHHHHHhCCC-EEEEE-------CCCCcH--HHHHHHHHHHHHHCCCCeEEEEe
Confidence 23344444422 33331 11 122 23566777788899999888886
No 159
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.06 E-value=1.4 Score=40.19 Aligned_cols=37 Identities=35% Similarity=0.515 Sum_probs=32.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|.++|. +|-||=..++.++..|+.+|.+|.++..||.
T Consensus 2 i~~~G~--~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~ 38 (148)
T cd03114 2 IGITGV--PGAGKSTLIDALITALRARGKRVAVLAIDPS 38 (148)
T ss_pred EEEECC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 445554 7889999999999999999999999999984
No 160
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=90.77 E-value=0.5 Score=48.54 Aligned_cols=116 Identities=15% Similarity=0.254 Sum_probs=57.5
Q ss_pred CCeEEEEEeccCCc-hhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccc-cCCchhhHHHHHHcc--CCCEEEecCC
Q 012331 296 EPVRIAMVGKYTGL-SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE-KENPDAYKAAWKLLK--GADGILVPGG 371 (466)
Q Consensus 296 ~~v~IaIVgkY~g~-~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~-~~~p~~y~~~~~~L~--~~DGIllPGG 371 (466)
++++|+|+. -+-. .+.-..+.+.|......+. +.|+....-...+. .+.-.++-..+++++ .+||+||.|.
T Consensus 33 rpL~I~IlN-LMP~K~~TE~Q~lrlL~~tplqv~----v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGA 107 (298)
T PF04204_consen 33 RPLKIGILN-LMPDKEETERQFLRLLSNTPLQVE----VTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGA 107 (298)
T ss_dssp --EEEEEE----SSHHHHHHHHHHHCCSSSS-EE----EEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---
T ss_pred cceEEEEEe-cccchHHHHHHHHHHhcCCCCceE----EEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCC
Confidence 468999997 4331 2233455666655544443 34443222111110 000112223355554 6899999998
Q ss_pred CCCC-C------chhHHHHHHHHHHcCCcEEEehHHHHH-HHHHhcccccccc
Q 012331 372 FGNR-G------VQGKILAAKYAREHRIPYLGICLGMQV-AVIEFARSVLNLR 416 (466)
Q Consensus 372 fG~r-g------~eG~i~aIk~are~~iPvLGICLGmQl-laia~Gr~v~klk 416 (466)
|=+. . +...-+.+.+++++..+.|.||.|.|. |...+|-.-..++
T Consensus 108 PvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~ 160 (298)
T PF04204_consen 108 PVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLP 160 (298)
T ss_dssp TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEE
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCC
Confidence 8663 2 244667788999999999999999999 5566665544333
No 161
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=90.70 E-value=0.67 Score=43.61 Aligned_cols=163 Identities=20% Similarity=0.287 Sum_probs=89.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~~ 81 (466)
|-||||| .=.+.||=.+++.|.+.|+.+|.+|...| |+++|.. + |=|.-...++.+..
T Consensus 1 r~i~I~~-t~t~vGKT~vslgL~~~l~~~g~~v~~~K-------------Pi~~~~~---~-----d~d~~~~~~~~~~~ 58 (199)
T PF13500_consen 1 RTIFITG-TDTGVGKTVVSLGLARALRRRGIKVGYFK-------------PIQTGPE---D-----DEDAELIRELFGLS 58 (199)
T ss_dssp -EEEEEE-SSSSSSHHHHHHHHHHHHHHTTSEEEEEE-------------EEEESCC---C-----SSHHHHHHHHCCTC
T ss_pred CEEEEEe-CCCCCCHHHHHHHHHHHHHhCCCceEEEe-------------eeEecCC---C-----CchHHHHHHHhCCC
Confidence 3467765 45789999999999999999999998777 8888876 1 22444456666655
Q ss_pred CCCC--CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEe-eCccc-cccCcc
Q 012331 82 LTRD--NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIE-LGGTI-GDIESM 157 (466)
Q Consensus 82 l~~~--~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~E-igGtv-GdiEs~ 157 (466)
.+.. +-++-..-....+..++.| ..++ .++|+ .++++ .+.|++||| .||+- +-.+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~i~--~~~l~--------~~~D~vlVEGag~~~~~~~~~~ 119 (199)
T PF13500_consen 59 EPPDDPSPYTFDEPASPHLAAELEG----VDID-----LERII--YKELA--------EEYDVVLVEGAGGLMVPIFSGD 119 (199)
T ss_dssp CCHHHHECEEESSSS-HHHHHHHHT-------------HHHHH--HHHCH--------TTTCEEEEEESSSTTSECCTTE
T ss_pred cccccccccccCcccCHHHHhhccC----Cccc-----HHHHH--HHHHh--------hcCCEEEEeCCcccCcccccCh
Confidence 4322 2222222223334444443 2222 22232 24443 367999999 44433 222333
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCcccc-CchhhhHHHhhcCCCcccEEEEecC
Q 012331 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKT-KPTQHSVRGLRGQGLTPNILACRST 219 (466)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~Kt-KptQhsvk~LrS~GI~pd~lV~Rs~ 219 (466)
-..+-++.|... +++|-- ++..| --+..+++.+++.|+..-++|+...
T Consensus 120 ~n~dia~~L~a~-----vIlV~~---------~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~ 168 (199)
T PF13500_consen 120 LNADIAKALGAP-----VILVAS---------GRLGTINHTLLTIEALKQRGIRVLGVILNRV 168 (199)
T ss_dssp EHHHHHHHHT-E-----EEEEEE---------SSTTHHHHHHHHHHHHHCTTS-EEEEEEEEC
T ss_pred HHHHHHHHcCCC-----EEEEeC---------CCCCCHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 344444444322 333321 12222 1234566778889999999998874
No 162
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=90.05 E-value=0.44 Score=48.40 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=38.2
Q ss_pred HHccCCCEEEecCCCCCC--CchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 358 KLLKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 358 ~~L~~~DGIllPGGfG~r--g~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
+....+|.|+||||.+.. .....++.++.+.+++.++.+||-|--+|+
T Consensus 71 ~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La 120 (322)
T PRK09393 71 ELLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLA 120 (322)
T ss_pred cccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHH
Confidence 345678999999987643 234577888888888999999999998766
No 163
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.69 E-value=2.7 Score=45.25 Aligned_cols=141 Identities=22% Similarity=0.335 Sum_probs=83.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~-~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~~ 81 (466)
.|+++| ..|.||=.+++.++..|+ .+|++|.++-+|+|-- +.
T Consensus 101 vi~~vG--~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~---~a-------------------------------- 143 (428)
T TIGR00959 101 VILMVG--LQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP---AA-------------------------------- 143 (428)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch---HH--------------------------------
Confidence 355554 578999999999999987 6899999999999521 00
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHH-HHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcch
Q 012331 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEI-QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 158 (466)
Q Consensus 82 l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit--~ei-~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~p 158 (466)
+. +-++.+...|-.+...+.-. .+| ++.++.+. ..++|+|||...|-.. +.. .
T Consensus 144 ------------~~---QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~-------~~~~DvVIIDTaGr~~-~d~-~ 199 (428)
T TIGR00959 144 ------------IE---QLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK-------ENGFDVVIVDTAGRLQ-IDE-E 199 (428)
T ss_pred ------------HH---HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH-------hcCCCEEEEeCCCccc-cCH-H
Confidence 00 11122233343344333211 233 34444432 3568999999999765 222 3
Q ss_pred HHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhc--CCCcccEEEEe
Q 012331 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRG--QGLTPNILACR 217 (466)
Q Consensus 159 f~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS--~GI~pd~lV~R 217 (466)
-++.++++..-+.++.+++| +.+. | .|.+++..+. ..+..+++|+-
T Consensus 200 l~~eL~~i~~~~~p~e~lLV-------vda~----t--gq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 200 LMEELAAIKEILNPDEILLV-------VDAM----T--GQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred HHHHHHHHHHhhCCceEEEE-------Eecc----c--hHHHHHHHHHHHhhCCCCEEEEe
Confidence 45777888877766665443 2221 2 2555544433 24567888865
No 164
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=88.97 E-value=2.4 Score=42.28 Aligned_cols=109 Identities=20% Similarity=0.128 Sum_probs=67.4
Q ss_pred HHHHHHhhhcCCCCCeEEEEEeccCCchhhH-HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHcc
Q 012331 283 EWTSRAEICDGLHEPVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK 361 (466)
Q Consensus 283 ~W~~lv~~v~~~~~~v~IaIVgkY~g~~Day-~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~ 361 (466)
-|+.+++.... ...+|+++..=.+..+.| ....++|+..|+..... .-+++. +.. .+| ...+.+.
T Consensus 16 i~~~~~~lag~--~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~---l~i~~r--~~a---~~~----~~~~~l~ 81 (250)
T TIGR02069 16 ILREFVSRAGG--EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKI---LDVRER--EDA---SDE----NAIALLS 81 (250)
T ss_pred HHHHHHHHhCC--CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEE---EecCCh--HHc---cCH----HHHHHHh
Confidence 46666666543 346899997212323333 35677888899863222 122211 000 111 1235688
Q ss_pred CCCEEEecCCCCCC-----CchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 362 GADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 362 ~~DGIllPGGfG~r-----g~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
++|+|++.||-=.+ .-.+...+++.+..++.|+.|.--|.-+|+
T Consensus 82 ~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 82 NATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred hCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 99999999984332 224667788888888999999999998774
No 165
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=88.85 E-value=3.4 Score=40.54 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=35.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
||.|-|+ +-==|.||=.++..|+..|..+|++|-++-+||--|.
T Consensus 1 M~iI~v~-n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~ 44 (231)
T PRK13849 1 MKLLTFC-SFKGGAGKTTALMGLCAALASDGKRVALFEADENRPL 44 (231)
T ss_pred CeEEEEE-CCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Confidence 5544443 2334679999999999999999999999999997653
No 166
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=88.50 E-value=5.3 Score=41.18 Aligned_cols=118 Identities=10% Similarity=0.175 Sum_probs=68.9
Q ss_pred CCeEEEEEeccCC-chhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc--cCCCEEEecCCC
Q 012331 296 EPVRIAMVGKYTG-LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGF 372 (466)
Q Consensus 296 ~~v~IaIVgkY~g-~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIllPGGf 372 (466)
++++|+|+. -.- -.+.-..+++.|......+.+ .+....+........ +.-.+|-..++++ ..+||+||.|.|
T Consensus 34 rpL~I~ILN-LMP~K~~TE~Q~lRlL~ntplqv~i--~~~~~~sh~~k~t~~-~hl~~fY~~f~~ik~~~fDGlIITGAP 109 (300)
T TIGR01001 34 RPLEILILN-LMPKKIETENQFLRLLSNSPLQVNI--TLLRTDSRKSKNTPI-EHLNKFYTTFEAVKDRKFDGLIITGAP 109 (300)
T ss_pred cceeEEEEe-cCCccHHHHHHHHHHhcCCCCceEE--EEEEeccccCCCCCH-HHHHHHhhCHHHHhcCCCCEEEEcCCC
Confidence 368999997 422 123445677777554444333 333333322211100 0111222334444 469999999987
Q ss_pred CCC-------CchhHHHHHHHHHHcCCcEEEehHHHHHH-HHHhccccccccC
Q 012331 373 GNR-------GVQGKILAAKYAREHRIPYLGICLGMQVA-VIEFARSVLNLRD 417 (466)
Q Consensus 373 G~r-------g~eG~i~aIk~are~~iPvLGICLGmQll-aia~Gr~v~klk~ 417 (466)
=.. -++...+.+.+++++-...|.||.|.|.+ -.-+|-+-..++.
T Consensus 110 vE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~ 162 (300)
T TIGR01001 110 VELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPE 162 (300)
T ss_pred cCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCC
Confidence 552 12456677889999999999999999984 4455555444443
No 167
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.94 E-value=6.6 Score=35.89 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=32.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+.++| ..|-||=.+++.+...|...|.+|.++-+|+|
T Consensus 3 ~~~~G--~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVG--LQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45555 36889999999999999999999999999984
No 168
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=87.40 E-value=1.1 Score=44.32 Aligned_cols=37 Identities=32% Similarity=0.250 Sum_probs=35.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
||.|.|+|- |+-||=..+..|-..|+.+|++|..+|-
T Consensus 1 m~vi~ivG~--~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF--KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC--CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 789999998 8999999999999999999999999993
No 169
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=87.39 E-value=0.95 Score=45.70 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-C-CeeEEeeecccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-G-LRVTCIKIDPYL 43 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~-g-~~v~~~K~DpYl 43 (466)
+.|.+.|. +|.||=.+++.|+..+..+ | ++|.++.+|||-
T Consensus 195 ~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35667775 8999999999999999876 5 999999999864
No 170
>PRK10818 cell division inhibitor MinD; Provisional
Probab=87.33 E-value=8 Score=38.01 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=34.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|-|-|++ -=.|.||=.+|+.++..|..+|++|-++-+||.
T Consensus 3 kviav~s-~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 3 RIIVVTS-GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred eEEEEEe-CCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5555553 457899999999999999999999999999995
No 171
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=87.02 E-value=2.6 Score=35.18 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=32.1
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 7 tggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
-.|-=.|.||=..|+.++..|..+|.+|-++-.||.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 344456899999999999999999999999999998
No 172
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=86.26 E-value=5.5 Score=38.29 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=33.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln 44 (466)
++++| -.|.||=.+++.++..+...|+||-++-.||--+
T Consensus 2 ~~~~g--~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~ 40 (217)
T cd02035 2 IFFTG--KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN 40 (217)
T ss_pred EEEeC--CCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 34444 6899999999999999999999999999998764
No 173
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=85.56 E-value=1.7 Score=50.45 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=56.8
Q ss_pred CeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCc-ccccccCCchhhHHHHHHccCCCEEEecCCCCCC
Q 012331 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDL-EDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (466)
Q Consensus 297 ~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l-~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r 375 (466)
.+||||+--- | ...+.-...|+..+|++..= |.-+++ +.. ..|.++-||..+|||.+.
T Consensus 1058 ~PkVAilREe-G-vNg~rEMa~af~~AgF~~~D------VtmtDlL~G~-------------~~ld~frGlaf~GGFSYa 1116 (1320)
T KOG1907|consen 1058 APKVAILREE-G-VNGDREMAAAFYAAGFETVD------VTMTDLLAGR-------------HHLDDFRGLAFCGGFSYA 1116 (1320)
T ss_pred CCceEEeecc-c-cccHHHHHHHHHHcCCceee------eeeehhhcCc-------------eeHhHhcceeeecCcchH
Confidence 4699998632 3 23677788999999997531 222222 111 346788999999999763
Q ss_pred C-------c-------hhHHHHHHHHH-HcCCcEEEehHHHHHHHH
Q 012331 376 G-------V-------QGKILAAKYAR-EHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 376 g-------~-------eG~i~aIk~ar-e~~iPvLGICLGmQllai 406 (466)
. + ++.......++ ....=-||||-|.|+|+.
T Consensus 1117 DvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1117 DVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred hhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHH
Confidence 2 1 23333333332 345567999999999993
No 174
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=85.25 E-value=4.3 Score=39.39 Aligned_cols=109 Identities=17% Similarity=0.087 Sum_probs=65.9
Q ss_pred HHHHHHhhhcCCCCCeEEEEEecc-CCchhhH-HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc
Q 012331 283 EWTSRAEICDGLHEPVRIAMVGKY-TGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (466)
Q Consensus 283 ~W~~lv~~v~~~~~~v~IaIVgkY-~g~~Day-~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L 360 (466)
-|+.+++... +...+|+++. + ....+.| ....++++..|+..... +.....+.. .+| ...+.+
T Consensus 17 i~~~~~~~ag--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~v~~-----~~~~~~~~a---~~~----~~~~~l 81 (217)
T cd03145 17 ILQRFVARAG--GAGARIVVIP-AASEEPAEVGEEYRDVFERLGAREVEV-----LVIDSREAA---NDP----EVVARL 81 (217)
T ss_pred HHHHHHHHcC--CCCCcEEEEe-CCCcChhHHHHHHHHHHHHcCCceeEE-----eccCChHHc---CCH----HHHHHH
Confidence 3455555543 2356899997 5 2222233 34667777888763321 211111100 111 123568
Q ss_pred cCCCEEEecCCCCCC-----CchhHHHHHHHHHHcCCcEEEehHHHHHHHH
Q 012331 361 KGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (466)
Q Consensus 361 ~~~DGIllPGGfG~r-----g~eG~i~aIk~are~~iPvLGICLGmQllai 406 (466)
.++|+|++.||-=.+ .-.+..++++.+.+++.|+.|.--|.-+++-
T Consensus 82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~ 132 (217)
T cd03145 82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSD 132 (217)
T ss_pred HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhh
Confidence 899999999974332 1236778888888899999999999888763
No 175
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=84.88 E-value=1.7 Score=44.01 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=38.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d 46 (466)
|| |.|+| =-|+||=.++++++..|..+|+||-++-+||=.|.=
T Consensus 1 m~-ia~~g--KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t 43 (290)
T CHL00072 1 MK-LAVYG--KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST 43 (290)
T ss_pred Ce-EEEEC--CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccc
Confidence 67 77777 778999999999999999999999999999987754
No 176
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=84.77 E-value=1.5 Score=43.42 Aligned_cols=44 Identities=23% Similarity=0.471 Sum_probs=39.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d 46 (466)
||-|-|+ | =-|+||=.++..|+..|..+|+||-++=+||..|-=
T Consensus 1 ~~~iav~-g-KGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~ 44 (273)
T PRK13232 1 MRQIAIY-G-KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADST 44 (273)
T ss_pred CCEEEEE-C-CCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccc
Confidence 6777777 5 788999999999999999999999999999998853
No 177
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=84.63 E-value=2.2 Score=43.22 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=36.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
||.|-|+|- ||-||=..+..|-..|+.+| +|..+|.||-
T Consensus 1 M~~i~i~G~--~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h 39 (274)
T PRK14493 1 MKVLSIVGY--KATGKTTLVERLVDRLSGRG-RVGTVKHMDT 39 (274)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHHhCC-CEEEEEEcCC
Confidence 788888887 89999999999999999999 9999999993
No 178
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=84.34 E-value=1.9 Score=42.17 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=39.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d 46 (466)
||-|.|. | =-|.||=.+++-|+..|..+|+||-++-+||-.|.-
T Consensus 1 m~~iav~-~-KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 1 MRQIAIY-G-KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADST 44 (270)
T ss_pred CcEEEEE-e-CCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCch
Confidence 6778887 5 889999999999999999999999999999998853
No 179
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=84.32 E-value=1.5 Score=43.74 Aligned_cols=39 Identities=36% Similarity=0.604 Sum_probs=34.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
.|.|+||.|= -|+||=.|+|+||.-|..+|.||.++-+|
T Consensus 2 ~~iIVvTSGK-GGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 2 ARIIVVTSGK-GGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred ceEEEEecCC-CCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 3789999874 68899999999999999999999998765
No 180
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=83.96 E-value=2.1 Score=42.64 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=40.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDA 47 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~ 47 (466)
||-|.++ | =.|+||=.+|+.|+..|..+|+||-++=+||--|.=.
T Consensus 1 ~~~i~~~-g-KGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~ 45 (279)
T PRK13230 1 MRKFCFY-G-KGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTR 45 (279)
T ss_pred CcEEEEE-C-CCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccc
Confidence 6778888 4 8899999999999999999999999999999877633
No 181
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=83.88 E-value=2.9 Score=38.91 Aligned_cols=40 Identities=40% Similarity=0.387 Sum_probs=36.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|+.|-|+|- |+-||-..+.-+-..|+.+|++|..+|.|+.
T Consensus 1 m~vi~i~G~--~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGY--SGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 677888887 8999999999999999999999999999876
No 182
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=83.81 E-value=1.6 Score=43.40 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=35.0
Q ss_pred cCCCEEEecCC-CCCC---CchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 361 KGADGILVPGG-FGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 361 ~~~DGIllPGG-fG~r---g~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
..+|.|+|||| +|.. ..+-..+.++...+.+.+++-||-|--++.
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al 114 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTAL 114 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHH
Confidence 67999999999 8874 334456777888888999999999853433
No 183
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=82.96 E-value=2.2 Score=44.36 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=43.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtms 51 (466)
+++||+|| =.|+||=.+|||++..|-+.|.||-++-.||=-|...-...
T Consensus 2 ~riv~f~G--KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTG--KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEec--CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 58999998 47899999999999999999999999999998887655444
No 184
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=82.11 E-value=3.6 Score=36.75 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=33.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
.+|+|| .+.||=..++-+-+.|+.+|++|...|-.+.
T Consensus 2 ~~~~~~---~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~ 38 (134)
T cd03109 2 MGFGTG---TDIGKTVATAILARALKEKGYRVAPLKPVQT 38 (134)
T ss_pred EEEeCC---CCcCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 378998 5699999999999999999999999998876
No 185
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=81.83 E-value=2.3 Score=43.33 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=38.4
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG 48 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~g 48 (466)
|-|||| ||-||=..+.++..+|+..|.+|.++..|.|-..|--
T Consensus 2 IgItG~--SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~ 44 (277)
T cd02029 2 IAVTGS--SGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERM 44 (277)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCch
Confidence 678996 8999999999999999999999999999999875543
No 186
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.57 E-value=3.4 Score=42.26 Aligned_cols=92 Identities=24% Similarity=0.296 Sum_probs=51.7
Q ss_pred eEEEEEeccCCchhh---HHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHH--HHHHc-cCCCEEEecCC
Q 012331 298 VRIAMVGKYTGLSDA---YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKA--AWKLL-KGADGILVPGG 371 (466)
Q Consensus 298 v~IaIVgkY~g~~Da---y~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~--~~~~L-~~~DGIllPGG 371 (466)
|+|+++.+. ...++ ...+.+.|+..|+.+.+.- ..+..+..... ..+ .+.. ..+.+ ..+|-|++-||
T Consensus 1 m~igii~~~-~~~~~~~~~~~i~~~l~~~g~~v~~~~----~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~dlvi~lGG 73 (292)
T PRK01911 1 MKIAIFGQT-YQESASPYIQELFDELEERGAEVLIEE----KFLDFLKQDLK-FHP-SYDTFSDNEELDGSADMVISIGG 73 (292)
T ss_pred CEEEEEeCC-CCHHHHHHHHHHHHHHHHCCCEEEEec----chhhhhccccc-ccc-ccccccchhhcccCCCEEEEECC
Confidence 579998764 32222 3456677888888776420 00111100000 000 0000 00223 36899999998
Q ss_pred CCCCCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 372 FGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 372 fG~rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
=|+ .+.+++.+...++|+|||=+|.
T Consensus 74 DGT-----~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 74 DGT-----FLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred cHH-----HHHHHHHhcCCCCCEEEEecCC
Confidence 653 5677887777899999999886
No 187
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=81.06 E-value=2.3 Score=43.60 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=35.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln 44 (466)
||+||++|= =|+||=..||+++..+..+|.||-++-+||-=|
T Consensus 1 ~r~~~~~GK--GGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGK--GGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEES--TTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecC--CCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 799999973 377999999999999999999999999999543
No 188
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=80.78 E-value=3.3 Score=40.96 Aligned_cols=69 Identities=23% Similarity=0.290 Sum_probs=43.5
Q ss_pred HHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC---CchhHHH-HHHHHHHcCC
Q 012331 317 LKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---GVQGKIL-AAKYAREHRI 392 (466)
Q Consensus 317 ~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r---g~eG~i~-aIk~are~~i 392 (466)
++.|+.-.... .++.+|+...+..+ .|+ ..-..+++|||-.-+ .+.|.+. .|.....++-
T Consensus 20 v~sLr~~~~p~---y~v~~V~~~~Li~E-----------pW~--~~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG 83 (253)
T COG4285 20 VRSLRLFAPPY---YAVDRVDAQFLIKE-----------PWE--ETTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGG 83 (253)
T ss_pred HHHHHhhccch---heEEEeeeheeecC-----------cch--hceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCC
Confidence 45555443333 35667888777543 243 345678999997654 4455543 3555666788
Q ss_pred cEEEehHHH
Q 012331 393 PYLGICLGM 401 (466)
Q Consensus 393 PvLGICLGm 401 (466)
-+||||.|-
T Consensus 84 ~fLGiCAG~ 92 (253)
T COG4285 84 NFLGICAGG 92 (253)
T ss_pred eEEEEeccc
Confidence 999999874
No 189
>PRK11670 antiporter inner membrane protein; Provisional
Probab=80.29 E-value=16 Score=38.54 Aligned_cols=45 Identities=29% Similarity=0.418 Sum_probs=37.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDA 47 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~ 47 (466)
|.|-|+.| =-|.||=.+|+.|+..|...|+||-++-+|||-|-=+
T Consensus 108 ~vIaV~S~-KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~ 152 (369)
T PRK11670 108 NIIAVSSG-KGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIP 152 (369)
T ss_pred EEEEEeCC-CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence 44555544 3678999999999999999999999999999987433
No 190
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=80.05 E-value=2.8 Score=38.41 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=31.2
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 10 v~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
.-.|.||=.+|+.|+..|..+|++|-++.+||.-+-
T Consensus 6 ~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~ 41 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPN 41 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHH
T ss_pred CCCCccHHHHHHHHHhccccccccccccccCccccc
Confidence 357899999999999999999999999999996543
No 191
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=80.02 E-value=2.8 Score=45.26 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=36.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
+.|.++| ..|.||=.+++.|+..|+.+|++|.++-.|||=
T Consensus 101 ~vi~lvG--~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVG--LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4677787 799999999999999999999999999999985
No 192
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=79.39 E-value=3.4 Score=38.05 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=31.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
|.|+|- +|-||-..+..+...|+.+|++|..+|-|
T Consensus 2 i~i~G~--~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGP--KNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 455664 79999999999999999999999999987
No 193
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.37 E-value=3.3 Score=44.69 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=34.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHH-HHHCCCeeEEeeeccccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVL-LKACGLRVTCIKIDPYLN 44 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~l-l~~~g~~v~~~K~DpYln 44 (466)
+.|+++| .+|.||..+++.|+.. +..+|.+|.++-+|+|=.
T Consensus 224 ~vi~lvG--ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 224 KVVFFVG--PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4577887 6899999999999974 478999999999999753
No 194
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=78.18 E-value=4.4 Score=38.14 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=36.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
+|.|+||++ -.|.||=.+++.++..|..+|++|-++-.||+-
T Consensus 17 ~kvI~v~s~-kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLITSV-KPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEecC-CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 467888754 467899999999999999999999999999974
No 195
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=77.78 E-value=4.1 Score=42.42 Aligned_cols=42 Identities=26% Similarity=0.463 Sum_probs=38.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln 44 (466)
+|.|.||| -.|.||=.+++.++..|..+|+||-++-.||+-+
T Consensus 31 ~~ii~v~g--kgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~ 72 (329)
T cd02033 31 TQIIAIYG--KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSD 72 (329)
T ss_pred CeEEEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeeccc
Confidence 36788885 7999999999999999999999999999999964
No 196
>CHL00175 minD septum-site determining protein; Validated
Probab=77.72 E-value=4.6 Score=40.07 Aligned_cols=45 Identities=31% Similarity=0.512 Sum_probs=38.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCCC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTDA 47 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY-ln~d~ 47 (466)
|.|+|++| --|.||=.+|+.++..|..+|++|-++-+||- -|++.
T Consensus 16 ~vi~v~s~-KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 16 RIIVITSG-KGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDL 61 (281)
T ss_pred eEEEEEcC-CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhh
Confidence 66777765 46899999999999999999999999999996 45553
No 197
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=77.48 E-value=4.2 Score=40.21 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=38.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccccC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYLNT 45 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~-~g~~v~~~K~DpYln~ 45 (466)
+|.|-|+ | =.|+||=.+|..||..|.. +|+||-++-+||-.|-
T Consensus 2 ~~vIav~-~-KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 2 TRKIAIY-G-KGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred ceEEEEE-c-CCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 3778788 6 8899999999999999997 6999999999999874
No 198
>PRK07667 uridine kinase; Provisional
Probab=76.51 E-value=5.3 Score=37.75 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=36.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln 44 (466)
.|.++|+ ||-||-..|..|...|+..|.+|..+-+|.|+.
T Consensus 19 iIgI~G~--~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 19 ILGIDGL--SRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 5778886 677999999999999999999999999999874
No 199
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.21 E-value=6.1 Score=40.76 Aligned_cols=93 Identities=29% Similarity=0.362 Sum_probs=51.6
Q ss_pred EEEEEeccCCchh---hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccC----CchhhHHHHHHccCCCEEEecCC
Q 012331 299 RIAMVGKYTGLSD---AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKE----NPDAYKAAWKLLKGADGILVPGG 371 (466)
Q Consensus 299 ~IaIVgkY~g~~D---ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~----~p~~y~~~~~~L~~~DGIllPGG 371 (466)
+|+++.+. +..+ ....+.+.|...|+++.+.- ..+..+....... +-+.|........++|.+++-||
T Consensus 7 ~I~iv~~~-~~~~~~~~~~~l~~~L~~~g~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGG 81 (306)
T PRK03372 7 RVLLVAHT-GRDEATEAARRVAKQLGDAGIGVRVLD----AEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGG 81 (306)
T ss_pred EEEEEecC-CCHHHHHHHHHHHHHHHHCCCEEEEee----chhhhhcccccccccccccccccchhhcccCCCEEEEEcC
Confidence 59999865 3222 33456777888887766420 0011110000000 00000000122246899999998
Q ss_pred CCCCCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 372 FGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 372 fG~rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
=|. .+.+++.+...++|+|||=+|.
T Consensus 82 DGT-----~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 82 DGT-----ILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred CHH-----HHHHHHHhccCCCcEEEEecCC
Confidence 653 6778888778899999999874
No 200
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=75.94 E-value=5 Score=41.48 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=35.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+.|.++| .+|.||=.+++.|+..|+.+|.+|.++-.|+|
T Consensus 115 ~vi~lvG--pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVG--VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4677787 89999999999999999999999999999984
No 201
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=75.77 E-value=3 Score=38.03 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC-----CchhHHHHHHHHHH
Q 012331 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYARE 389 (466)
Q Consensus 315 SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r-----g~eG~i~aIk~are 389 (466)
.+.++|+..|+.+.. ++-.+.+ .....+.+.++|+|++.||-=.+ .-.+..++|+.+..
T Consensus 4 ~~~~~f~~~g~~v~~------l~~~~~~----------~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~ 67 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQ------LDLSDRN----------DADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYR 67 (154)
T ss_dssp HHHHHHHHCT-EEEE------CCCTSCG----------HHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEE------EeccCCC----------hHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 456788889977543 4332211 11234667899999999974322 12467889999988
Q ss_pred cCCcEEEehHHHHH
Q 012331 390 HRIPYLGICLGMQV 403 (466)
Q Consensus 390 ~~iPvLGICLGmQl 403 (466)
++.|+.|.=-|.-+
T Consensus 68 ~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 68 KGGVIIGTSAGAMI 81 (154)
T ss_dssp TTSEEEEETHHHHC
T ss_pred CCCEEEEEChHHhh
Confidence 89999999999854
No 202
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=75.65 E-value=5.6 Score=37.30 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=37.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d 46 (466)
|.|+| .||-||-..|.+|...|+..|.+|..+.+|=|..-.
T Consensus 2 i~i~G--~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 2 VGIAG--PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 77888 588899999999999999999999999999998754
No 203
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=75.37 E-value=5.9 Score=39.01 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
|.|-|. | =-|.||=.+++.|+..|..+|+||-++-+||=.|.
T Consensus 3 ~iIav~-~-KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~ 44 (270)
T PRK13185 3 LVLAVY-G-KGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDS 44 (270)
T ss_pred eEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcch
Confidence 677777 6 89999999999999999999999999999995444
No 204
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=74.89 E-value=5.5 Score=39.48 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=38.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
||-|-|. | =-|+||=.+|..||..|..+|+||-++-+||=.|-
T Consensus 1 m~~iav~-~-KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 1 MRKVAIY-G-KGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred CCEEEEe-C-CCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 5667777 5 88999999999999999999999999999998884
No 205
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=74.85 E-value=6 Score=34.75 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=33.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
|.++|. +|.||=..++.++..|..+|.+|-++-.||
T Consensus 2 i~~~Gk--gG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGK--GGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 677885 899999999999999999999999999999
No 206
>PLN02929 NADH kinase
Probab=74.72 E-value=5.4 Score=41.15 Aligned_cols=63 Identities=24% Similarity=0.348 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchhHHHHHHHHHHc
Q 012331 311 DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREH 390 (466)
Q Consensus 311 Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG~i~aIk~are~ 390 (466)
++...+.+.|+.+|+++.. +...++ . ..+.++|-|++-||=|. .+.+++.+ ..
T Consensus 34 ~~~~~~~~~L~~~gi~~~~------v~r~~~-~--------------~~~~~~Dlvi~lGGDGT-----~L~aa~~~-~~ 86 (301)
T PLN02929 34 DTVNFCKDILQQKSVDWEC------VLRNEL-S--------------QPIRDVDLVVAVGGDGT-----LLQASHFL-DD 86 (301)
T ss_pred HHHHHHHHHHHHcCCEEEE------eecccc-c--------------cccCCCCEEEEECCcHH-----HHHHHHHc-CC
Confidence 4666788899999987743 112111 0 23567899999998653 56777777 77
Q ss_pred CCcEEEehHH
Q 012331 391 RIPYLGICLG 400 (466)
Q Consensus 391 ~iPvLGICLG 400 (466)
++|++||=.|
T Consensus 87 ~iPvlGIN~G 96 (301)
T PLN02929 87 SIPVLGVNSD 96 (301)
T ss_pred CCcEEEEECC
Confidence 8999999888
No 207
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=74.24 E-value=5.7 Score=39.76 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=39.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc------cccCCC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP------YLNTDA 47 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp------Yln~d~ 47 (466)
||.|.|.| +=-|+||=.++|.++..|+..|.+|.+|-+|| .+|+|.
T Consensus 1 M~~iai~s-~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~ 52 (243)
T PF06564_consen 1 MKVIAIVS-PKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPL 52 (243)
T ss_pred CcEEEEec-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCC
Confidence 67787774 55688999999999999999999999999999 566653
No 208
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=74.03 E-value=7.3 Score=37.05 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYL 43 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~-~g~~v~~~K~DpYl 43 (466)
|-|.||| .-+|.||=.+|+.|+..|-. +|+||-++-.||.-
T Consensus 36 ~vi~v~s-~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 36 NLIMVTS-SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred eEEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 5566664 45899999999999999975 79999999999974
No 209
>PRK13236 nitrogenase reductase; Reviewed
Probab=73.22 E-value=6.3 Score=39.94 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=36.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
+-|-| .| =-|+||=.+|+.|+..|..+|+||-++=+||..|-
T Consensus 7 ~~~~~-~G-KGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 7 RQIAF-YG-KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred eEEEE-EC-CCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 34444 44 67899999999999999999999999999999864
No 210
>PRK10037 cell division protein; Provisional
Probab=73.15 E-value=5.7 Score=38.90 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=33.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
||.| -...-=-|.||=.+|+.|+..|..+|+||-++-+||=
T Consensus 1 ~~~i-av~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 1 MAIL-GLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred CcEE-EEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 5533 3333445789999999999999999999999999994
No 211
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.47 E-value=6.5 Score=42.15 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+.|.++|- +|.||=.+++.|+..+..+|.+|.++-.|||
T Consensus 207 ~ii~lvGp--tGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 207 RIISLIGQ--TGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 56788884 6999999999999999999999999999998
No 212
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=72.30 E-value=7.4 Score=39.75 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=50.9
Q ss_pred EEEEEeccCCchh---hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC
Q 012331 299 RIAMVGKYTGLSD---AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (466)
Q Consensus 299 ~IaIVgkY~g~~D---ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r 375 (466)
+|+++.+. +..+ ....+.+.|+..|+.+.+.- ..+....... .+ .+. ..+....+|.|++-||=|.
T Consensus 7 ~v~iv~~~-~~~~~~e~~~~i~~~L~~~g~~v~v~~----~~~~~~~~~~---~~-~~~-~~~~~~~~d~vi~~GGDGt- 75 (291)
T PRK02155 7 TVALIGRY-QTPGIAEPLESLAAFLAKRGFEVVFEA----DTARNIGLTG---YP-ALT-PEEIGARADLAVVLGGDGT- 75 (291)
T ss_pred EEEEEecC-CCHHHHHHHHHHHHHHHHCCCEEEEec----chhhhcCccc---cc-ccC-hhHhccCCCEEEEECCcHH-
Confidence 59999865 3222 34567788888887765420 0010000000 00 000 0122236899999998652
Q ss_pred CchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 376 GVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 376 g~eG~i~aIk~are~~iPvLGICLGm 401 (466)
...+++.+...++|+|||=+|.
T Consensus 76 ----~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 76 ----MLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ----HHHHHHHhcCCCCCEEEEcCCC
Confidence 5677777667789999999886
No 213
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=72.29 E-value=7.4 Score=39.42 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=36.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
||-|-|. | =.|+||=.+++.|+..|...|+||-++-+||-.|-
T Consensus 4 ~~~iai~-~-KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 4 LRQIAFY-G-KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred ceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 4555554 3 67899999999999999999999999999998665
No 214
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=72.25 E-value=5.7 Score=35.86 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.8
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 9 gv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+-=+|.||=.+|+.|+..|..+|++|-++-+||-
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~ 39 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3457899999999999999999999999999885
No 215
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.17 E-value=9 Score=42.71 Aligned_cols=92 Identities=18% Similarity=0.259 Sum_probs=52.8
Q ss_pred CCCeEEEEEeccCCchh---hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCC
Q 012331 295 HEPVRIAMVGKYTGLSD---AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 371 (466)
Q Consensus 295 ~~~v~IaIVgkY~g~~D---ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGG 371 (466)
.++.+|+++.+. .... ....+.+.|+..|+.+.+.- ..+..+... .+.... ....+.++|.||+-||
T Consensus 288 ~~~~~i~iv~~~-~~~~~~~~~~~i~~~l~~~~~~v~~~~----~~~~~~~~~----~~~~~~-~~~~~~~~dlvi~lGG 357 (569)
T PRK14076 288 IKPTKFGIVSRI-DNEEAINLALKIIKYLDSKGIPYELES----FLYNKLKNR----LNEECN-LIDDIEEISHIISIGG 357 (569)
T ss_pred cCCcEEEEEcCC-CCHHHHHHHHHHHHHHHHCCCEEEEec----hhhhhhccc----cccccc-ccccccCCCEEEEECC
Confidence 345789999764 3222 23456677877787665420 001111100 000000 0012346899999998
Q ss_pred CCCCCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 372 FGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 372 fG~rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
=|. .+.+++.+...++|+|||=+|.
T Consensus 358 DGT-----~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 358 DGT-----VLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred cHH-----HHHHHHHhcCCCCCEEEEcCCC
Confidence 653 6677787777899999998885
No 216
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=71.91 E-value=7.4 Score=37.05 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=37.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d 46 (466)
-|.|+| =-|.||=.+++.|+..|..+|+||-++-.||-.|.=
T Consensus 2 ~iav~g--KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~ 43 (212)
T cd02117 2 QIAIYG--KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADST 43 (212)
T ss_pred EEEEEC--CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence 477884 889999999999999999999999999999998753
No 217
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=71.88 E-value=7 Score=35.72 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=31.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
++|++.| ..|-||+..+..|...|..+|++|.....
T Consensus 1 ~~I~ieG--~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 1 MFIVFEG--IDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5788888 67899999999999999999999966554
No 218
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=70.93 E-value=9.5 Score=37.54 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=34.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
|.|+ | =.|.||=.+|+.|+..|..+|+||-++-+||=.|.
T Consensus 3 i~v~-g-KGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~ 42 (267)
T cd02032 3 LAVY-G-KGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDS 42 (267)
T ss_pred EEEe-c-CCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5555 4 88999999999999999999999999999995543
No 219
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.92 E-value=19 Score=30.27 Aligned_cols=79 Identities=19% Similarity=0.106 Sum_probs=48.2
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCC-cccccccCCchhhHHHHHHccCCCEEEecCCCCCCCc
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACD-LEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~-l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~ 377 (466)
+|++|| |..+....+.+.++..|+.... ...+. .+... ......+.++|.||++=++-+-..
T Consensus 1 ~vliVG---G~~~~~~~~~~~~~~~G~~~~~------hg~~~~~~~~~--------~~l~~~i~~aD~VIv~t~~vsH~~ 63 (97)
T PF10087_consen 1 SVLIVG---GREDRERRYKRILEKYGGKLIH------HGRDGGDEKKA--------SRLPSKIKKADLVIVFTDYVSHNA 63 (97)
T ss_pred CEEEEc---CCcccHHHHHHHHHHcCCEEEE------EecCCCCccch--------hHHHHhcCCCCEEEEEeCCcChHH
Confidence 478888 5455667777888888887753 31111 11000 012367889999999987644322
Q ss_pred hhHHHHHHHHHHcCCcEEE
Q 012331 378 QGKILAAKYAREHRIPYLG 396 (466)
Q Consensus 378 eG~i~aIk~are~~iPvLG 396 (466)
+..+-+.|.+.++|+.=
T Consensus 64 --~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 64 --MWKVKKAAKKYGIPIIY 80 (97)
T ss_pred --HHHHHHHHHHcCCcEEE
Confidence 33444567788999863
No 220
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=70.86 E-value=6.4 Score=42.29 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~--~~g~~v~~~K~DpY 42 (466)
+.|++.|- +|.||=.+++.|+..+. ..|++|.++.+|||
T Consensus 222 ~~i~~vGp--tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGP--TGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35666665 89999999999998886 67899999999998
No 221
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.66 E-value=11 Score=38.59 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=50.8
Q ss_pred EEEEEeccCCchh---hHHHHHHHHHHcCCceeEEeEEEEeeCC-CcccccccCCchhhH-HHHHHc-cCCCEEEecCCC
Q 012331 299 RIAMVGKYTGLSD---AYLSILKALLHASVDLRKKLVIDWIPAC-DLEDATEKENPDAYK-AAWKLL-KGADGILVPGGF 372 (466)
Q Consensus 299 ~IaIVgkY~g~~D---ay~SI~~aL~~aG~~~~v~v~i~~i~s~-~l~~~~~~~~p~~y~-~~~~~L-~~~DGIllPGGf 372 (466)
+|+++.+. ...+ ....+.+.|+..|+.+.+.- .....+ ..... .+ .+. .....+ ..+|-+++-||=
T Consensus 7 ~i~ii~~~-~~~~~~~~~~~l~~~L~~~g~~v~~~~--~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~D~vi~lGGD 78 (296)
T PRK04539 7 NIGIVTRP-NTPDIQDTAHTLITFLKQHGFTVYLDE--VGIKEGCIYTQD----TV-GCHIVNKTELGQYCDLVAVLGGD 78 (296)
T ss_pred EEEEEecC-CCHHHHHHHHHHHHHHHHCCCEEEEec--ccccccchhccc----cc-cccccchhhcCcCCCEEEEECCc
Confidence 59999765 2222 33456677888888776420 000000 00000 00 000 000233 368999999986
Q ss_pred CCCCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 373 GNRGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 373 G~rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
|. .+.+++.+...++|+|||=+|.
T Consensus 79 GT-----~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 79 GT-----FLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred HH-----HHHHHHHhcccCCCEEEEecCC
Confidence 53 5677777777799999999986
No 222
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.41 E-value=11 Score=38.56 Aligned_cols=83 Identities=28% Similarity=0.253 Sum_probs=50.1
Q ss_pred EEEEEeccCCchhh---HHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc-cCCCEEEecCCCCC
Q 012331 299 RIAMVGKYTGLSDA---YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL-KGADGILVPGGFGN 374 (466)
Q Consensus 299 ~IaIVgkY~g~~Da---y~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L-~~~DGIllPGGfG~ 374 (466)
+|+++.+. . .++ ...+.+.|+..|+++.+.- ..+..+.. + .+ .++.+ .++|-+++=||=|.
T Consensus 12 ~i~ii~~~-~-~~~~~~~~~i~~~l~~~g~~~~~~~----~~~~~~~~------~-~~--~~~~~~~~~Dlvi~iGGDGT 76 (287)
T PRK14077 12 KIGLVTRP-N-VSLDKEILKLQKILSIYKVEILLEK----ESAEILDL------P-GY--GLDELFKISDFLISLGGDGT 76 (287)
T ss_pred EEEEEeCC-c-HHHHHHHHHHHHHHHHCCCEEEEec----chhhhhcc------c-cc--chhhcccCCCEEEEECCCHH
Confidence 59998754 2 233 2456677777787765420 00111100 0 00 00222 46899999998552
Q ss_pred CCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 375 rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
.+.+++.+...++|+|||=+|.
T Consensus 77 -----~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 77 -----LISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred -----HHHHHHHhcCCCCcEEEEeCCC
Confidence 5778888777899999999886
No 223
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=67.62 E-value=5.7 Score=39.02 Aligned_cols=42 Identities=33% Similarity=0.465 Sum_probs=37.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
||-|-|. | =.|.||=.+++.|+..|..+| ||-++-+||=-|.
T Consensus 2 ~~~iav~-~-KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~ 43 (264)
T PRK13231 2 MKKIAIY-G-KGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADT 43 (264)
T ss_pred ceEEEEE-C-CCCCcHHHHHHHHhcccCCCC-EEEEEeEccCccc
Confidence 5777777 6 899999999999999999999 9999999998654
No 224
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=67.56 E-value=4.7 Score=38.28 Aligned_cols=29 Identities=38% Similarity=0.728 Sum_probs=21.4
Q ss_pred cCCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 012331 11 VSGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (466)
Q Consensus 11 ~s~~gkgi~~as~g~ll~~~--g~~v~~~K~ 39 (466)
.-|=|||-|+|++|..|++. |+||.++.|
T Consensus 9 ytG~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 9 YTGDGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EESSSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EeCCCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 34679999999999999985 568887765
No 225
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=67.19 E-value=18 Score=35.74 Aligned_cols=92 Identities=23% Similarity=0.249 Sum_probs=59.0
Q ss_pred CeEEEEEeccCCch---hhH-HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCC
Q 012331 297 PVRIAMVGKYTGLS---DAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (466)
Q Consensus 297 ~v~IaIVgkY~g~~---Day-~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGf 372 (466)
..+|+.+- +-+.. |-| ....++|+..|+.+.- +....+ | -......|.+.|.|.|.||-
T Consensus 32 ~~~i~FIP-tAs~~~~~~~Yv~k~~~~l~~lg~~v~~---L~l~~~-----------~--~~~Ie~~l~~~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFIP-TASVDSEDDFYVEKVRNALAKLGLEVSE---LHLSKP-----------P--LAAIENKLMKADIIYVGGGN 94 (224)
T ss_pred CceEEEEe-cCccccchHHHHHHHHHHHHHcCCeeee---eeccCC-----------C--HHHHHHhhhhccEEEECCch
Confidence 45899986 62211 224 2478999999988753 111111 1 01223456779999999973
Q ss_pred CCC-----CchhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 373 GNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 373 G~r-----g~eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
=-- .-.|....|+.+..+++|+.|+--|.-+.+
T Consensus 95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~ 132 (224)
T COG3340 95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAG 132 (224)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeec
Confidence 211 124788899999999999999987765443
No 226
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=67.18 E-value=1.5e+02 Score=30.08 Aligned_cols=143 Identities=16% Similarity=0.200 Sum_probs=86.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCC
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKL 82 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~~l 82 (466)
.|.+.|- +|.||=.++..|+..|..+|.+|..+-.|||- .| .++
T Consensus 77 ~i~~~G~--~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-----------i~----------------~~~------- 120 (270)
T PRK06731 77 TIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-----------IG----------------TVQ------- 120 (270)
T ss_pred EEEEECC--CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-----------HH----------------HHH-------
Confidence 5667776 89999999999999999999999999888652 11 111
Q ss_pred CCCCcccchHhhHHHHhhhhcCCCCCCeeEEcc-cchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHH
Q 012331 83 TRDNNITTGKIYQSVIDKERKGDYLGKTVQVVP-HITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (466)
Q Consensus 83 ~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviP-Hit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~e 161 (466)
... + .++-+| +.+++ .=.+++.+.+..++. ..+.|++||.-.|..-. ...-++
T Consensus 121 -------------ql~--~-~~~~~~--~~~~~~~~~~~l~~~l~~l~~------~~~~D~ViIDt~Gr~~~--~~~~l~ 174 (270)
T PRK06731 121 -------------QLQ--D-YVKTIG--FEVIAVRDEAAMTRALTYFKE------EARVDYILIDTAGKNYR--ASETVE 174 (270)
T ss_pred -------------HHH--H-HhhhcC--ceEEecCCHHHHHHHHHHHHh------cCCCCEEEEECCCCCcC--CHHHHH
Confidence 110 1 111123 33333 224567777777652 34689999999998631 134567
Q ss_pred HHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEec
Q 012331 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS 218 (466)
Q Consensus 162 a~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs 218 (466)
.++++.....++ .+|+. +.++ .|..=.++-++.+++ +.++++|+--
T Consensus 175 el~~~~~~~~~~---~~~LV----l~a~--~~~~d~~~~~~~f~~--~~~~~~I~TK 220 (270)
T PRK06731 175 EMIETMGQVEPD---YICLT----LSAS--MKSKDMIEIITNFKD--IHIDGIVFTK 220 (270)
T ss_pred HHHHHHhhhCCC---eEEEE----EcCc--cCHHHHHHHHHHhCC--CCCCEEEEEe
Confidence 777766555443 23432 3321 112224455666765 6778888763
No 227
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=67.09 E-value=12 Score=35.46 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=32.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
+.|-|+|. ||-||=..+..|-.+|+.+|++|..+|.|.
T Consensus 7 ~ii~ivG~--sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 7 PLLAIAAW--SGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred eEEEEECC--CCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 45667774 999999999999999999999999999753
No 228
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=66.98 E-value=8.6 Score=40.96 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=34.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
|.|.|+ .-=-|.||=.+|..|+..|..+|+||-+|-+||--|.
T Consensus 122 ~vIav~-n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~l 164 (405)
T PRK13869 122 QVIAVT-NFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASL 164 (405)
T ss_pred eEEEEE-cCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCH
Confidence 444444 2234679999999999999999999999999997554
No 229
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=66.71 E-value=10 Score=37.45 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=37.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
-|.|.| =-|.||=.+|..|+..|..+|+||-++-+||=.|.
T Consensus 2 ~ia~~g--KGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 2 QIAIYG--KGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eeEEeC--CCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 467774 78999999999999999999999999999998875
No 230
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.68 E-value=13 Score=38.22 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=29.0
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
.++|-+++-||=|+ .+.+++.+...++|+|||=+|.
T Consensus 67 ~~~Dlvi~iGGDGT-----lL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 67 SSMKFAIVLGGDGT-----VLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred cCcCEEEEEeCcHH-----HHHHHHHhcCCCCcEEEEeCCC
Confidence 36899999998652 5677887777899999998873
No 231
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=66.26 E-value=6.7 Score=39.93 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=39.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d 46 (466)
|||||-|= -|+||=..++||+.-|..-+-+|-+|--||--|+-
T Consensus 20 KwifVGGK--GGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlS 62 (323)
T KOG2825|consen 20 KWIFVGGK--GGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62 (323)
T ss_pred eEEEEcCc--CCcCccchhhHHHHHHhccCCceEEeecCcccchH
Confidence 89999763 57899999999999999999999999999998874
No 232
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=66.12 E-value=10 Score=41.10 Aligned_cols=39 Identities=31% Similarity=0.574 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
..|+++| .-|.||=.+++-++..|+..|++|.++-+|+|
T Consensus 96 ~vI~lvG--~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 96 QTIMLVG--LQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 3677887 68999999999999999999999999999976
No 233
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.31 E-value=15 Score=37.52 Aligned_cols=87 Identities=24% Similarity=0.199 Sum_probs=50.0
Q ss_pred EEEEEeccCCchhh---HHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc-cCCCEEEecCCCCC
Q 012331 299 RIAMVGKYTGLSDA---YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL-KGADGILVPGGFGN 374 (466)
Q Consensus 299 ~IaIVgkY~g~~Da---y~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L-~~~DGIllPGGfG~ 374 (466)
+|+++.+. ....+ ...+.+.|+..|+.+.+.- ..+..+...... . .....+ .++|.+++-||=|.
T Consensus 7 ~i~iv~~~-~~~~~~~~~~~i~~~l~~~g~~v~~~~----~~~~~~~~~~~~-~-----~~~~~~~~~~d~vi~lGGDGT 75 (292)
T PRK03378 7 CIGIVGHP-RHPTALTTHEMLYHWLTSKGYEVIVEQ----QIAHELQLKNVK-T-----GTLAEIGQQADLAIVVGGDGN 75 (292)
T ss_pred EEEEEEeC-CCHHHHHHHHHHHHHHHHCCCEEEEec----chhhhcCccccc-c-----cchhhcCCCCCEEEEECCcHH
Confidence 59999764 32222 2456677888887765420 001011000000 0 001223 46899999998653
Q ss_pred CCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 375 rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
.+.+++.+...++|+|||=+|.
T Consensus 76 -----~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 76 -----MLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred -----HHHHHHHhcCCCCeEEEEECCC
Confidence 5667777766789999999987
No 234
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=65.05 E-value=11 Score=38.28 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln 44 (466)
|.|.|. | =-|.||=.+|+.|+..|..+|+||-++-+||=.|
T Consensus 1 ~vIav~-g-KGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 1 RIIAIY-G-KGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHD 41 (296)
T ss_pred CEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCC
Confidence 345666 4 6899999999999999999999999999999554
No 235
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.24 E-value=12 Score=37.79 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=27.6
Q ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHH--cCCcEEEehHHH
Q 012331 362 GADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICLGM 401 (466)
Q Consensus 362 ~~DGIllPGGfG~rg~eG~i~aIk~are--~~iPvLGICLGm 401 (466)
++|-+++=||=|. .+.+++.+.. .++|++||=+|.
T Consensus 35 ~~Dlvi~iGGDGT-----~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 35 NPDIVISVGGDGT-----LLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred CCCEEEEECCcHH-----HHHHHHHhcccCCCCeEEEEeCCC
Confidence 5699999998653 5677777766 689999999885
No 236
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=62.73 E-value=6.8 Score=37.48 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=23.8
Q ss_pred CCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 012331 12 SGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (466)
Q Consensus 12 s~~gkgi~~as~g~ll~~~--g~~v~~~K~ 39 (466)
-|=|||-|+|++|..|++. |+||.++.|
T Consensus 28 tGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 28 TSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred eCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 3569999999999999984 678888776
No 237
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=62.47 E-value=9.6 Score=38.83 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=27.9
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 12 SGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 12 s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
-|+||=.|+|.|...|..+|+||-.+=+||--
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIGCDPKA 40 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEESSSS
T ss_pred CCcccChhhhHHHHHHHhccceeeEecccCCC
Confidence 37999999999999999999999999999964
No 238
>PLN02727 NAD kinase
Probab=61.17 E-value=16 Score=43.02 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=52.5
Q ss_pred eEEEEEeccCC-chhhHHHHHHHHHHc-CCceeEEeEEEEeeCCCcccc-cccC---CchhhHHHHHHc-cCCCEEEecC
Q 012331 298 VRIAMVGKYTG-LSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDA-TEKE---NPDAYKAAWKLL-KGADGILVPG 370 (466)
Q Consensus 298 v~IaIVgkY~g-~~Day~SI~~aL~~a-G~~~~v~v~i~~i~s~~l~~~-~~~~---~p~~y~~~~~~L-~~~DGIllPG 370 (466)
-+|+||.|... ..+....+.+.|.+. |+.+.+ +.+..+.. .... ....|...+..+ ..+|-||+=|
T Consensus 679 rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~V-------E~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLG 751 (986)
T PLN02727 679 KTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLV-------EPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLG 751 (986)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEE-------ecchHHHhhccccccccceecccchhhcccCCCEEEEEC
Confidence 38999998722 112334567788876 766543 22211000 0000 000001111233 3689999999
Q ss_pred CCCCCCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 371 GFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 371 GfG~rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
|=|. ++.+++.+....+|+|||=+|.
T Consensus 752 GDGT-----lLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 752 GDGV-----ILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred CcHH-----HHHHHHHhcCCCCCEEEEeCCC
Confidence 8653 6778888878899999999884
No 239
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.89 E-value=14 Score=37.51 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=49.3
Q ss_pred eEEEEEeccCCchh---hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCC
Q 012331 298 VRIAMVGKYTGLSD---AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (466)
Q Consensus 298 v~IaIVgkY~g~~D---ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~ 374 (466)
|||+++.+. +..+ ....+.+.|+..|+++.+.- ..++...... .+........++|.|++-||=|.
T Consensus 1 m~v~iv~~~-~k~~~~~~~~~I~~~L~~~g~~v~v~~----~~~~~~~~~~------~~~~~~~~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARR-DKEEALKLAYRVYDFLKVSGYEVVVDS----ETYEHLPEFS------EEDVLPLEEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecC-CCHHHHHHHHHHHHHHHHCCCEEEEec----chhhhcCccc------ccccccccccCCCEEEEEeCcHH
Confidence 579998754 3222 23457777888887766520 0011110000 00000001136899999998653
Q ss_pred CCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 375 rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
..++++ +...++|++||=.|.
T Consensus 70 -----lL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 70 -----ILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -----HHHHHH-hcCCCCeEEEEeCCC
Confidence 456677 666789999998886
No 240
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=60.78 E-value=21 Score=34.22 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=31.1
Q ss_pred HHccCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHH
Q 012331 358 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (466)
Q Consensus 358 ~~L~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLG 400 (466)
+.|+++|.||+...+++.-.....++++...+++.+++||.-+
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEGGG
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEccc
Confidence 4689999999999886543445677888888899999999833
No 241
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.97 E-value=14 Score=35.94 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=29.7
Q ss_pred ccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 012331 10 VVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (466)
Q Consensus 10 v~s~~gkgi~~as~g~ll~-~~g~~v~~~K~DpYln 44 (466)
.==|.||-.+|.-+|..|. .+|+||-.+-+||=-|
T Consensus 10 ~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 10 QKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch
Confidence 3346799999999999999 6779999999999543
No 242
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=59.25 E-value=86 Score=28.60 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=26.0
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 11 ~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
--|.||=.+|+.|+..| ++|-++-.||..
T Consensus 8 kgG~GKSt~a~nLA~~l----~~vlliD~D~~~ 36 (179)
T cd03110 8 KGGTGKTTVTAALAALL----KNVVLADCDVDA 36 (179)
T ss_pred CCCCCHHHHHHHHHHHH----hCcEEEECCCCC
Confidence 36889999999999999 899999999873
No 243
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.32 E-value=26 Score=35.08 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=45.2
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCc
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~ 377 (466)
|+++++.+ ......+..+.+.|...|..+.. -.... ....++|.|++-||=|.
T Consensus 1 m~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~------~~~~~-----------------~~~~~~d~vi~iGGDGT--- 53 (256)
T PRK14075 1 MKLGIFYR-EEKEKEAKFLKEKISKEHEVVEF------CEASA-----------------SGKVTADLIIVVGGDGT--- 53 (256)
T ss_pred CEEEEEeC-ccHHHHHHHHHHHHHHcCCeeEe------ecccc-----------------cccCCCCEEEEECCcHH---
Confidence 46777743 23334566677788777765432 21110 12247899999998653
Q ss_pred hhHHHHHHHHHHcCCcEEEehHHH
Q 012331 378 QGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 378 eG~i~aIk~are~~iPvLGICLGm 401 (466)
.+.+++.+ ++|++||=.|.
T Consensus 54 --~L~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 54 --VLKAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred --HHHHHHHc---CCCEEEEeCCC
Confidence 45555555 89999999885
No 244
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=57.62 E-value=72 Score=34.82 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=79.2
Q ss_pred CCCcccEEEEecCCCCCcchhccc-CccCCCCCCCeeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhHHHHH
Q 012331 207 QGLTPNILACRSTVALDDNVKGKL-SQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWT 285 (466)
Q Consensus 207 ~GI~pd~lV~Rs~~~l~s~~r~Ki-sL~~~l~~~~Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l~~W~ 285 (466)
-|.....-++|-+.=+.. .. --||-+.-++=.|+ .+++ .|...+.+--.++.+.++..+.+ .+....|.
T Consensus 100 pgy~~~lp~aR~Dvf~~~----~~~~kF~E~N~Dgssgm--~~~~-~l~~~~~~~~~~~~f~~~~~v~~---~~~~~~~v 169 (445)
T PF14403_consen 100 PGYDSPLPIARLDVFLTE----DGSFKFCEFNADGSSGM--NEDD-ELARIFLELPAMQEFAERYRVEP---LPLFQSWV 169 (445)
T ss_pred CCCCCcCcceeeeEEEcC----CCceEEEEecCCCcccc--chhH-HHHHHHHhhHHHHHHHhhcCccC---cchHHHHH
Confidence 344444445554443332 22 33555555555555 6778 88888988888888888877763 22344453
Q ss_pred H----HHhhhcCCCCCeEEEEEeccCCch--hhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHH
Q 012331 286 S----RAEICDGLHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 359 (466)
Q Consensus 286 ~----lv~~v~~~~~~v~IaIVgkY~g~~--Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~ 359 (466)
+ .........++++||||| |.+.. +-..-..+.+...|+++.+ .+. .+
T Consensus 170 d~~l~~y~~~~~~~~~P~IAIvD-f~~~~~~~Ef~~f~~~f~~~G~~~vI------~d~-------------------~~ 223 (445)
T PF14403_consen 170 DALLDIYRTFGGRVEKPNIAIVD-FLEYPTLSEFEVFQRLFEEHGYDCVI------CDP-------------------RD 223 (445)
T ss_pred HHHHHHHHHhcCcCCCCcEEEEe-cccCCccchHHHHHHHHHHcCCceEe------cCh-------------------HH
Confidence 2 222233344578999999 74432 3344567888899999876 233 44
Q ss_pred ccCCCEEEecCCCC
Q 012331 360 LKGADGILVPGGFG 373 (466)
Q Consensus 360 L~~~DGIllPGGfG 373 (466)
|.--||.+..||+-
T Consensus 224 L~y~~g~L~~~~~~ 237 (445)
T PF14403_consen 224 LEYRDGRLYAGGRP 237 (445)
T ss_pred ceecCCEEEECCEe
Confidence 55567888887753
No 245
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=57.02 E-value=24 Score=31.16 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=31.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|.|-|+| ..+|.||-..|..++..|..+|.+|-.+-+|++
T Consensus 1 k~i~v~s-~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp EEEEEEE-SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 4555554 567899999999999999999999999988874
No 246
>PRK01184 hypothetical protein; Provisional
Probab=56.97 E-value=13 Score=34.19 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=21.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v 34 (466)
|+.|++||+.-|| |+..+ ++++..|+.+
T Consensus 1 ~~~i~l~G~~GsG--KsT~a----~~~~~~g~~~ 28 (184)
T PRK01184 1 MKIIGVVGMPGSG--KGEFS----KIAREMGIPV 28 (184)
T ss_pred CcEEEEECCCCCC--HHHHH----HHHHHcCCcE
Confidence 7889999997664 88753 3688888755
No 247
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=56.86 E-value=20 Score=37.62 Aligned_cols=40 Identities=30% Similarity=0.203 Sum_probs=35.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+|.|-|+|. ||-||=.....+-..|+.+||+|..+|-|.-
T Consensus 205 ~~~~~~~g~--~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 205 PPLLGVVGY--SGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred ccEEEEecC--CCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 367888884 9999999999999999999999999997753
No 248
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.80 E-value=41 Score=31.46 Aligned_cols=87 Identities=14% Similarity=0.157 Sum_probs=52.1
Q ss_pred HhhHHHHhhhhcCCCCCCeeEEccc------ch-----HHHHHHHH-HHhcccCCCCCCCCcEEEEeeCccccccCcch-
Q 012331 92 KIYQSVIDKERKGDYLGKTVQVVPH------IT-----DEIQDWIE-RVAMIPVDGKEGPVDVCVIELGGTIGDIESMP- 158 (466)
Q Consensus 92 kiy~~vi~ker~g~ylg~tvqviPH------it-----~ei~~~i~-~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~p- 158 (466)
..|...++....-.+.+..++|+.. ++ .....|+. .+.. ..+||.|+|.+|.- |+-...
T Consensus 21 ~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~------~~~p~~vii~~G~N--D~~~~~~ 92 (204)
T cd01830 21 NRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLS------QPGVRTVIILEGVN--DIGASGT 92 (204)
T ss_pred CcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhc------CCCCCEEEEecccc--ccccccc
Confidence 5677777654444455566666543 11 24445554 3431 34699999998864 764322
Q ss_pred -----------HHHHHHHhhhhcCCCCEEEEEeeeeeee
Q 012331 159 -----------FIEALGQFSYRVGPGNFCLIHVSLVPVL 186 (466)
Q Consensus 159 -----------f~ea~rq~~~~~g~~n~~~ih~t~vp~~ 186 (466)
|.+.+++|-....+.++-.|.+|+-|+-
T Consensus 93 ~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t~~P~~ 131 (204)
T cd01830 93 DFAAAPVTAEELIAGYRQLIRRAHARGIKVIGATITPFE 131 (204)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 6777777777665556666666766643
No 249
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=56.45 E-value=23 Score=34.73 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=32.0
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 11 ~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
=-|+||=.+|+.|+..|..+|+||-++-+||=.|.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~ 42 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDS 42 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccc
Confidence 67899999999999999999999999999996554
No 250
>PF02424 ApbE: ApbE family; InterPro: IPR003374 This prokaryotic family of lipoproteins are related to ApbE, from Salmonella typhimurium. ApbE is involved in thiamine synthesis []. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP) during the biosynthesis of the pyrimidine moiety of thiamine.; PDB: 2O34_B 2O18_C 1VRM_A 3PND_D.
Probab=56.23 E-value=9.3 Score=38.02 Aligned_cols=91 Identities=26% Similarity=0.429 Sum_probs=51.1
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeec--ccccCCC--------CCCCc---cccceEEEccCCccccCCCCccccc
Q 012331 11 VSGLGKGVTASSIGVLLKACGLRVTCIKID--PYLNTDA--------GTMSP---FEHGEVFVLDDGGEVDLDLGNYERF 77 (466)
Q Consensus 11 ~s~~gkgi~~as~g~ll~~~g~~v~~~K~D--pYln~d~--------gtmsp---~~hgEvfv~~dg~e~dlDlg~yerf 77 (466)
+.|++||-++--+..+|++.|.+=.++-+= =+..=.+ |--+| -+.-.++-+.|++=+= =|+||||
T Consensus 110 lggiaKGyavD~~~~~L~~~gi~~~lVn~GGdi~~~G~~~~g~~W~IgI~~P~~~~~~~~~~~l~~~avaT--Sg~y~r~ 187 (254)
T PF02424_consen 110 LGGIAKGYAVDRAAELLREAGITNALVNAGGDIRAIGSKPDGQPWRIGIEDPRDPGRILGVLELSNGAVAT--SGDYERY 187 (254)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTTSCEEEEETTEEEEESBCTTSSBEEEEEEETCTTCCEEEEEECCTSEEEE--EETTCCC
T ss_pred cchhHHHHHHHHHHHHHHHcCCCeEEEeCCCcEEEeccCCCCCeEEEEecccCCCCceeEEEEeCCcEEEe--ccCceee
Confidence 468999999999999999998754433221 0000000 11122 2222344444443110 2899999
Q ss_pred cCCCCCCCCcccchHhhHHHHhhhhcCCCC-CCeeEE
Q 012331 78 MDIKLTRDNNITTGKIYQSVIDKERKGDYL-GKTVQV 113 (466)
Q Consensus 78 ~~~~l~~~~n~t~gkiy~~vi~ker~g~yl-g~tvqv 113 (466)
...+ |+.|+++|+. |.|.-. ....||
T Consensus 188 ~~~~---------g~~~~HIidP-~tG~p~~~~~~sv 214 (254)
T PF02424_consen 188 FEID---------GKRYHHIIDP-RTGYPAESGIASV 214 (254)
T ss_dssp CCCT---------SCECES-BET-TTSSB-SSSEEEE
T ss_pred EEEC---------CEEeeeeECC-CCCcCccCCcEEE
Confidence 9654 8888888876 566555 444443
No 251
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=56.02 E-value=14 Score=34.63 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=33.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCe----eEEeeecccc
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLR----VTCIKIDPYL 43 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~----v~~~K~DpYl 43 (466)
.|.|+|+ ||-||-..|..|..+|...|.. +..+-+|-|.
T Consensus 1 IIgI~G~--sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGP--SGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEES--TTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECC--CCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 3778886 6779999999999999999998 7777777765
No 252
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=55.51 E-value=52 Score=31.33 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=56.5
Q ss_pred cchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccc---ccc----------C
Q 012331 89 TTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI---GDI----------E 155 (466)
Q Consensus 89 t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtv---Gdi----------E 155 (466)
+||++..+.++. .|... ...++||-=-+.|+..+.+... .. .|++|+ .|||= .|+ -
T Consensus 27 ~sG~~l~~~L~~--ag~~~-~~~~iV~D~~~~I~~~l~~~~~------~~-~Dvvlt-tGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 27 KSGPLLVELLEE--AGHNV-AAYTIVPDDKEQIRATLIALID------ED-VDVVLT-TGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred cchhHHHHHHHH--cCCcc-ceEEEeCCCHHHHHHHHHHHhc------CC-CCEEEE-cCCccCCCCcCCHHHHHHHHhc
Confidence 499999888854 57777 7889999999999999999873 33 777665 89982 222 1
Q ss_pred cch-HHHHHHHhhhhc-CCC
Q 012331 156 SMP-FIEALGQFSYRV-GPG 173 (466)
Q Consensus 156 s~p-f~ea~rq~~~~~-g~~ 173 (466)
-+| |=|++|++.++. |..
T Consensus 96 eipGFgE~fR~~S~~~~g~~ 115 (169)
T COG0521 96 EIPGFGELFRRLSLEEIGPT 115 (169)
T ss_pred cCCcHHHHHHHhhhhcCCCc
Confidence 245 999999999998 543
No 253
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=55.48 E-value=25 Score=33.71 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=33.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
|+|++-| .+|.||=.|+|=|+..++.+|.+|.++-+|.|-
T Consensus 2 ~vi~lvG--ptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVG--PTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEE--STTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEEC--CCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 5667777 479999999999999999999999999999885
No 254
>PRK06696 uridine kinase; Validated
Probab=54.85 E-value=26 Score=33.76 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=36.0
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~ 45 (466)
.|.|+| .||-||-..|..|...|...|..|..+-+|=|..-
T Consensus 24 iI~I~G--~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 24 RVAIDG--ITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 566777 58889999999999999999999999999999863
No 255
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=54.19 E-value=81 Score=30.09 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=20.9
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEe
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGI 397 (466)
.++|||++.+.- . ......++.+.+.++|+..+
T Consensus 59 ~~vdgiIi~~~~--~--~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 59 QGVDAIIINPAS--P--TALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred cCCCEEEEeCCC--h--hhhHHHHHHHHHCCCeEEEE
Confidence 479999997631 1 11123456677788898765
No 256
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=53.98 E-value=56 Score=31.79 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=49.3
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCch
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~e 378 (466)
+|.+|+. . ..+...|.++=+..|+..... +|++-. ++... ......||.|++.+ | .
T Consensus 63 ~ILfVgt--k-~~~~~~V~~~A~~~g~~~v~~---RWlgGt-LTN~~-----------~~~~~~Pdlliv~d-p-----~ 118 (196)
T TIGR01012 63 DILVVSA--R-IYGQKPVLKFAKVTGARAIAG---RFTPGT-FTNPM-----------QKAFREPEVVVVTD-P-----R 118 (196)
T ss_pred eEEEEec--C-HHHHHHHHHHHHHhCCceECC---eeCCCC-CCCcc-----------ccccCCCCEEEEEC-C-----c
Confidence 6888883 2 224455666666666665432 788653 32211 02346789999875 2 2
Q ss_pred hHHHHHHHHHHcCCcEEEehH
Q 012331 379 GKILAAKYAREHRIPYLGICL 399 (466)
Q Consensus 379 G~i~aIk~are~~iPvLGICL 399 (466)
....|+++|..-++|+.|||-
T Consensus 119 ~~~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 119 ADHQALKEASEVGIPIVALCD 139 (196)
T ss_pred cccHHHHHHHHcCCCEEEEee
Confidence 345789999999999999993
No 257
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=53.76 E-value=12 Score=36.29 Aligned_cols=30 Identities=43% Similarity=0.771 Sum_probs=23.3
Q ss_pred ccCCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 012331 10 VVSGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (466)
Q Consensus 10 v~s~~gkgi~~as~g~ll~~~--g~~v~~~K~ 39 (466)
|..|=|||-|+|.+|..|++. |++|-++.|
T Consensus 33 V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 33 VFTGNGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred EEecCCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 345679999999999999985 567766543
No 258
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=53.45 E-value=20 Score=35.74 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=27.7
Q ss_pred CEEEEEeCCccCCcchHHHHH-HHHHHHHHCCCeeEEee
Q 012331 1 MKYVLVTGGVVSGLGKGVTAS-SIGVLLKACGLRVTCIK 38 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~a-s~g~ll~~~g~~v~~~K 38 (466)
||.+|++||+ |-.+..+ .+..-|+.+|+.|+++-
T Consensus 1 ~~i~~~~g~~----~g~~~~~~~La~~L~~~g~eV~vv~ 35 (348)
T TIGR01133 1 KKVVLAAGGT----GGHIFPALAVAEELIKRGVEVLWLG 35 (348)
T ss_pred CeEEEEeCcc----HHHHhHHHHHHHHHHhCCCEEEEEe
Confidence 7889999988 4455544 89999999999998874
No 259
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=53.37 E-value=17 Score=37.86 Aligned_cols=93 Identities=28% Similarity=0.506 Sum_probs=67.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~~~l~ 83 (466)
|=+|| +=|.||-....-+|+.|..+|+||.++-+||= |||-=|-+ ||+==|+-.....
T Consensus 54 iGITG--~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS--------Sp~TGGsi------------LGDRiRM~~~~~~ 111 (323)
T COG1703 54 IGITG--VPGAGKSTLIEALGRELRERGHRVAVLAVDPS--------SPFTGGSI------------LGDRIRMQRLAVD 111 (323)
T ss_pred EEecC--CCCCchHHHHHHHHHHHHHCCcEEEEEEECCC--------CCCCCccc------------cccHhhHHhhccC
Confidence 33565 46889999999999999999999999999994 78877765 8887777666533
Q ss_pred CC----CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEe
Q 012331 84 RD----NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIE 146 (466)
Q Consensus 84 ~~----~n~t~gkiy~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~E 146 (466)
.+ +..|. .+|| -++.+..+.|.-+- ..++|++|||
T Consensus 112 ~~vFiRs~~sr--------------G~lG-------GlS~at~~~i~~ld-------AaG~DvIIVE 150 (323)
T COG1703 112 PGVFIRSSPSR--------------GTLG-------GLSRATREAIKLLD-------AAGYDVIIVE 150 (323)
T ss_pred CCeEEeecCCC--------------ccch-------hhhHHHHHHHHHHH-------hcCCCEEEEE
Confidence 22 22222 2455 35666666666553 4689999999
No 260
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=52.67 E-value=22 Score=38.73 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=34.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
||.|=|+|= |+-||-..+.-|-..|+.+||||..||=|.
T Consensus 1 MkVi~IvG~--sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGW--KDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEec--CCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 677778884 899999999999999999999999999664
No 261
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=52.51 E-value=25 Score=35.12 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|.+..+-=.|.||=.+|+.++..|..+|.+|.++-.||=
T Consensus 4 i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 4 IHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 444444567999999999999999999999999999985
No 262
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=52.22 E-value=23 Score=33.05 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=31.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
.|++|| .||-||=..|..|-.-|+++|.+|..+--|
T Consensus 4 vIwltG--lsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 4 VIWLTG--LSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEES--STTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 578888 799999999999999999999998887655
No 263
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=52.13 E-value=18 Score=35.97 Aligned_cols=45 Identities=31% Similarity=0.585 Sum_probs=35.6
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccc
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v 412 (466)
.++|+++++= |+||++ .++|.. ..+|+.|||----+++...|+++
T Consensus 68 ~GvdaiiIaC-f~DPgl----~~~Re~--~~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 68 QGVDAIIIAC-FSDPGL----AAARER--AAIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred cCCcEEEEEe-cCChHH----HHHHHH--hCCCceehhHHHHHHHHHhcceE
Confidence 4689999987 888764 344443 36999999999999999999874
No 264
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=51.70 E-value=27 Score=31.60 Aligned_cols=37 Identities=32% Similarity=0.284 Sum_probs=29.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
+-|.|+|. |+-||=..+..|-+.|+++|++|..+|=+
T Consensus 1 pvv~VvG~--~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGP--KNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 35778885 89999999999999999999999988754
No 265
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=51.47 E-value=16 Score=38.84 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=30.3
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeee-cccccCC
Q 012331 13 GLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNTD 46 (466)
Q Consensus 13 ~~gkgi~~as~g~ll~~~g~~v~~~K~-DpYln~d 46 (466)
|.||=.+++.|+..|..+|+||-+|-+ ||=-|.-
T Consensus 117 GVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt 151 (387)
T PHA02519 117 GVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTAS 151 (387)
T ss_pred CCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcc
Confidence 569999999999999999999999996 9966643
No 266
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.35 E-value=19 Score=34.34 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=39.2
Q ss_pred cCCCEEEecCCCCCC-Cc-------------hhHHHHHHHHHHcCCcEEEehHHHHHHHHHhcccc
Q 012331 361 KGADGILVPGGFGNR-GV-------------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (466)
Q Consensus 361 ~~~DGIllPGGfG~r-g~-------------eG~i~aIk~are~~iPvLGICLGmQllaia~Gr~v 412 (466)
..+|++++|||||.. .+ .....+++...+.++|+==||.---++..-||.-+
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence 357999999999973 11 12455666777889999999998888887777643
No 267
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=51.25 E-value=91 Score=26.48 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEee-CCCcccccccCCchhh-HHHHHHccCCCEEEecCCCCCCCchhHHHHHHHHHH
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIP-ACDLEDATEKENPDAY-KAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 389 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~-s~~l~~~~~~~~p~~y-~~~~~~L~~~DGIllPGGfG~rg~eG~i~aIk~are 389 (466)
+...+.+.|+..|..+. ++.+.. ++.+ ..+.| ......|..||+|++-+|- ....|.......|+.
T Consensus 17 ~f~~~a~~L~~~G~~vv---nPa~~~~~~~~-------~~~~ym~~~l~~L~~cD~i~~l~gW--e~S~GA~~E~~~A~~ 84 (92)
T PF14359_consen 17 AFNAAAKRLRAKGYEVV---NPAELGIPEGL-------SWEEYMRICLAMLSDCDAIYMLPGW--ENSRGARLEHELAKK 84 (92)
T ss_pred HHHHHHHHHHHCCCEEe---CchhhCCCCCC-------CHHHHHHHHHHHHHhCCEEEEcCCc--ccCcchHHHHHHHHH
Confidence 55667888999885542 233330 1111 11111 1222457799999997653 333566666777888
Q ss_pred cCCcEE
Q 012331 390 HRIPYL 395 (466)
Q Consensus 390 ~~iPvL 395 (466)
.++|++
T Consensus 85 lGl~V~ 90 (92)
T PF14359_consen 85 LGLPVI 90 (92)
T ss_pred CCCeEe
Confidence 888874
No 268
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=50.94 E-value=19 Score=35.32 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=29.3
Q ss_pred cCCCEEEecCCCCCC-Cch-hHHHHHHHHHHcCCcEEEehH
Q 012331 361 KGADGILVPGGFGNR-GVQ-GKILAAKYAREHRIPYLGICL 399 (466)
Q Consensus 361 ~~~DGIllPGGfG~r-g~e-G~i~aIk~are~~iPvLGICL 399 (466)
.+.|+|.++-|||+- |+. |+.-+--.+...++|++|||-
T Consensus 57 ~dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 57 QDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HHCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 367999999999983 553 444444466778999999984
No 269
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.58 E-value=26 Score=37.37 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=33.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHH----CCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKA----CGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~----~g~~v~~~K~DpY 42 (466)
+.|++.|-. |.||=.|+|.++..|+. +|.+|.++-+|+|
T Consensus 175 ~vi~lvGpt--GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 175 RVFILVGPT--GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred eEEEEECCC--CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 356666765 99999999999998874 5899999999988
No 270
>PRK06179 short chain dehydrogenase; Provisional
Probab=50.45 E-value=19 Score=34.87 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=26.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
|.|+||||- |+||+ ++.+.|.++|++|...--||
T Consensus 5 ~~vlVtGas-g~iG~-----~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTGAS-SGIGR-----ATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CEEEEecCC-CHHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 679999985 77775 45566778999999877665
No 271
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=50.44 E-value=31 Score=31.92 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=30.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
++|+|+|. .|-||...+..|..-|...|++|...
T Consensus 4 ~~IvieG~--~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 4 MFIVIEGI--DGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 78999995 68899999999999999999998643
No 272
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=50.28 E-value=31 Score=38.16 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=28.1
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHH
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLG 400 (466)
.++|.||.-||=|. ++.+++.+....+|+|||=+|
T Consensus 261 ~~~DlVIsiGGDGT-----lL~Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 261 TKVDLVITLGGDGT-----VLWAASMFKGPVPPVVPFSMG 295 (508)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCC
Confidence 46899999998653 567777777778999999877
No 273
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.06 E-value=26 Score=37.98 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=27.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
+.|-||| +=||..|++=|..+|++.|+++.+
T Consensus 122 ~~I~VTG----TnGKTTTt~ml~~iL~~~g~~~~~ 152 (498)
T PRK02006 122 KVLAITG----TNGKTTTTALTGLLCERAGKKVAV 152 (498)
T ss_pred CEEEEEC----CCcHHHHHHHHHHHHHHcCCCEEE
Confidence 4688888 479999999999999999999887
No 274
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=49.96 E-value=36 Score=30.31 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=33.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|-++++ =+|.||=..++.++..|..+|.+|-++-.||+
T Consensus 2 i~~~~~-kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~ 39 (139)
T cd02038 2 IAVTSG-KGGVGKTNISANLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred EEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 345555 78999999999999999999999999999984
No 275
>PRK15453 phosphoribulokinase; Provisional
Probab=49.84 E-value=24 Score=36.33 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=39.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtms 51 (466)
..|-|||+ ||-||=.+|.++..+|+..|.++.++..|-|=-.|-..|.
T Consensus 6 piI~ItG~--SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~ 53 (290)
T PRK15453 6 PIIAVTGS--SGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMK 53 (290)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHh
Confidence 36889997 8999999999999999998988888888877766655553
No 276
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.73 E-value=34 Score=35.05 Aligned_cols=87 Identities=28% Similarity=0.339 Sum_probs=49.0
Q ss_pred EEEEEeccCCch---hhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc-cCCCEEEecCCCCC
Q 012331 299 RIAMVGKYTGLS---DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL-KGADGILVPGGFGN 374 (466)
Q Consensus 299 ~IaIVgkY~g~~---Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L-~~~DGIllPGGfG~ 374 (466)
+|+++.+. +.. +....+.+.|+..++++.+. ....+.+...... +. ....+ ..+|-|++-||=|.
T Consensus 6 ~v~iv~~~-~k~~a~e~~~~i~~~L~~~giev~v~----~~~~~~~~~~~~~-----~~-~~~~~~~~~d~vi~~GGDGt 74 (295)
T PRK01231 6 NIGLIGRL-GSSSVVETLRRLKDFLLDRGLEVILD----EETAEVLPGHGLQ-----TV-SRKLLGEVCDLVIVVGGDGS 74 (295)
T ss_pred EEEEEecC-CCHHHHHHHHHHHHHHHHCCCEEEEe----cchhhhcCccccc-----cc-chhhcccCCCEEEEEeCcHH
Confidence 59998653 222 24456777787777776542 1111111100000 00 00122 35899999998542
Q ss_pred CCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 375 rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
...+++.+...++|+|||=.|.
T Consensus 75 -----~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 75 -----LLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred -----HHHHHHHhcCCCCCEEEEeCCc
Confidence 4566677667899999999875
No 277
>PRK06953 short chain dehydrogenase; Provisional
Probab=48.64 E-value=24 Score=33.15 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=25.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
||.++||||. ++||.-++ +.|.++|++|.++-.+
T Consensus 1 ~~~vlvtG~s-g~iG~~la-----~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVGAS-RGIGREFV-----RQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEcCC-CchhHHHH-----HHHHhCCCEEEEEECC
Confidence 7889999996 88887654 4455689999887443
No 278
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=48.56 E-value=30 Score=34.13 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|-|.||++ -.|.||-.+|..++..|...|.||-++-.|+-
T Consensus 104 ~vi~vts~-~~g~Gktt~a~nLA~~la~~g~~VllID~D~~ 143 (274)
T TIGR03029 104 KALAVVSA-KSGEGCSYIAANLAIVFSQLGEKTLLIDANLR 143 (274)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 45666654 58999999999999999999999999999864
No 279
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=48.21 E-value=27 Score=30.37 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=49.7
Q ss_pred CcccchHhhHHHHhhhhcCCCCCCeeEEccc-----chHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc---
Q 012331 86 NNITTGKIYQSVIDKERKGDYLGKTVQVVPH-----ITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM--- 157 (466)
Q Consensus 86 ~n~t~gkiy~~vi~ker~g~ylg~tvqviPH-----it~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~--- 157 (466)
.+.+++.-|...+.++ .+..+.|... -+.....++.+.... . ....||++++++|+ .|+-.-
T Consensus 11 ~~~~~~~~~~~~l~~~-----~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~-~--~~~~~d~vvi~~G~--ND~~~~~~~ 80 (179)
T PF13472_consen 11 YGAPNNGSYPDRLAER-----PGRGIEVYNLGVSGATSSDFLARLQRDVLR-F--KDPKPDLVVISFGT--NDVLNGDEN 80 (179)
T ss_dssp TTTSSCTSHHHHHHHH-----HTCCEEEEEEE-TT-BHHHHHHHHHHHCHH-H--CGTTCSEEEEE--H--HHHCTCTTC
T ss_pred CCCCCCCCHHHHHHHh-----hCCCcEEEEEeecCccHhHHHHHHHHHHhh-h--ccCCCCEEEEEccc--ccccccccc
Confidence 3344557788888875 3444444422 122233333332100 0 25689999999995 555442
Q ss_pred -----hHHHHHHHhhhhcCCCCEEEEEeeeeeeecCC
Q 012331 158 -----PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVV 189 (466)
Q Consensus 158 -----pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~ 189 (466)
-|.++++++...+.+.. -.+.+++.|+....
T Consensus 81 ~~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~~ 116 (179)
T PF13472_consen 81 DTSPEQYEQNLRRIIEQLRPHG-PVILVSPPPRGPDP 116 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSST
T ss_pred cccHHHHHHHHHHHHHhhcccC-cEEEecCCCccccc
Confidence 27788888888776666 44444555665443
No 280
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=47.97 E-value=89 Score=31.56 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=58.7
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCch
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~e 378 (466)
+|.+|+. . ......|.++-.+.|...... +|++-. ++... -..+..||.|||.+ | .
T Consensus 73 ~Il~Vst--r-~~~~~~V~k~A~~tg~~~i~~---Rw~pGt-lTN~~-----------~~~f~~P~llIV~D-p-----~ 128 (249)
T PTZ00254 73 DVVVVSS--R-PYGQRAVLKFAQYTGASAIAG---RFTPGT-FTNQI-----------QKKFMEPRLLIVTD-P-----R 128 (249)
T ss_pred cEEEEEc--C-HHHHHHHHHHHHHhCCeEECC---cccCCC-CCCcc-----------ccccCCCCEEEEeC-C-----C
Confidence 4667763 1 224455667666677766443 687653 32210 02346799999986 2 2
Q ss_pred hHHHHHHHHHHcCCcEEEeh-----------------HHH---HHHHHHhccccccccC
Q 012331 379 GKILAAKYAREHRIPYLGIC-----------------LGM---QVAVIEFARSVLNLRD 417 (466)
Q Consensus 379 G~i~aIk~are~~iPvLGIC-----------------LGm---Qllaia~Gr~v~klk~ 417 (466)
.-..+|++|..-+||+.||| -|- +++.-.+++.++.++.
T Consensus 129 ~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~Ndds~~SI~li~~lLar~Vl~~rG 187 (249)
T PTZ00254 129 TDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAREVLRLRG 187 (249)
T ss_pred cchHHHHHHHHhCCCEEEEecCCCCcccCceeeCCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 23568889989999999999 343 3444466777766653
No 281
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=47.67 E-value=28 Score=36.47 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=37.5
Q ss_pred HccCCCEEEecCCCCCCC-c--hhHHHHHHHHHHcCCcEEEehHHHHHHH
Q 012331 359 LLKGADGILVPGGFGNRG-V--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (466)
Q Consensus 359 ~L~~~DGIllPGGfG~rg-~--eG~i~aIk~are~~iPvLGICLGmQlla 405 (466)
....+|-|++.+|.+... . .-...+++.+...+.++-|||-|-=+|+
T Consensus 73 ~~~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA 122 (328)
T COG4977 73 AAPPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLA 122 (328)
T ss_pred ccCcceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHH
Confidence 344588888878877642 2 3478899999999999999999998887
No 282
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=47.36 E-value=38 Score=34.49 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln 44 (466)
|-|-|+| .=-|.||=.+|+.|+..|..+|.+|-++-+||.-+
T Consensus 94 ~vIav~~-~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 94 VVVAVIG-GRGGAGASTLAAALALAAARHGLRTLLVDADPWGG 135 (322)
T ss_pred eEEEEEc-CCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 4556655 45789999999999999999999999999999865
No 283
>PRK05693 short chain dehydrogenase; Provisional
Probab=46.98 E-value=22 Score=34.59 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=24.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
||-++|||| -|++|+.++ +.|..+|++|.+.-
T Consensus 1 mk~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGC-SSGIGRALA-----DAFKAAGYEVWATA 32 (274)
T ss_pred CCEEEEecC-CChHHHHHH-----HHHHHCCCEEEEEe
Confidence 688999998 478887554 45667899887753
No 284
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=46.84 E-value=18 Score=36.50 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=28.8
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 13 GLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 13 ~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|+||-.|++-+..-|...|.||-.+=+||=
T Consensus 11 GIGKSTts~N~aAAla~~GkkVl~vGCDPK 40 (278)
T COG1348 11 GIGKSTTSQNLAAALAELGKKVLIVGCDPK 40 (278)
T ss_pred CcCcchhHHHHHHHHHHcCCeEEEEcCCCC
Confidence 799999999999999999999999999994
No 285
>PRK07102 short chain dehydrogenase; Provisional
Probab=46.79 E-value=22 Score=33.84 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=25.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
||-++||||- ++||+.++- .|-++|++|.+.=.++
T Consensus 1 ~~~vlItGas-~giG~~~a~-----~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 1 MKKILIIGAT-SDIARACAR-----RYAAAGARLYLAARDV 35 (243)
T ss_pred CcEEEEEcCC-cHHHHHHHH-----HHHhcCCEEEEEeCCH
Confidence 6889999986 778766554 4446799888775443
No 286
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=46.29 E-value=2.8e+02 Score=26.70 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=30.2
Q ss_pred EEEEEeCCccCC-cchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 2 KYVLVTGGVVSG-LGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 2 k~i~vtggv~s~-~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
|.+|||...... -|=+..+..+..-|+.+|++|+++=.++..
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 566777655432 355667788999999999999998665543
No 287
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=46.09 E-value=33 Score=33.29 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=28.7
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
.|..|| +||-||-..|..+-..|.++|++|.++
T Consensus 25 viW~TG--LSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 25 VIWFTG--LSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred EEEeec--CCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467788 899999999999999999999976543
No 288
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=46.07 E-value=15 Score=36.85 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=29.9
Q ss_pred ccCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 360 L~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
+.++|.|++=||=|. ++.+++.+...++|+|||=+|.
T Consensus 23 ~~~~Dlvi~iGGDGT-----lL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDGF-----MLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCHH-----HHHHHHHhcCCCCeEEEEeCCC
Confidence 356899999998652 6778888777889999999885
No 289
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=46.02 E-value=30 Score=35.08 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=29.7
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+|+|.|.==-|.||=.+|.-|+.-|...|+||-++-+|.|
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~ 40 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIR 40 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TT
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3555555556889999999999999999999999999986
No 290
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.86 E-value=37 Score=34.32 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=25.0
Q ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHc-CCcEEEehH-H
Q 012331 362 GADGILVPGGFGNRGVQGKILAAKYAREH-RIPYLGICL-G 400 (466)
Q Consensus 362 ~~DGIllPGGfG~rg~eG~i~aIk~are~-~iPvLGICL-G 400 (466)
++|-+++=||=|. .+.+++.+... ++|+|||=+ |
T Consensus 39 ~~D~vi~lGGDGT-----~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 39 NANIIVSIGGDGT-----FLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred CccEEEEECCcHH-----HHHHHHHhcccCCCeEEeEecCC
Confidence 5689999998553 45666665443 789999998 6
No 291
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.49 E-value=28 Score=32.05 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=27.9
Q ss_pred HHccCCCEEEecCCCCCCCchhHHHHHHHHHH--cCCcEEEehH
Q 012331 358 KLLKGADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICL 399 (466)
Q Consensus 358 ~~L~~~DGIllPGGfG~rg~eG~i~aIk~are--~~iPvLGICL 399 (466)
+.+.++|.|++-||..-|..--..+-++...+ .+.|+.|+|.
T Consensus 81 e~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 81 EELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred cccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH
Confidence 34667999999999877643222333444433 5669999995
No 292
>PRK05439 pantothenate kinase; Provisional
Probab=44.60 E-value=37 Score=35.22 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=35.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeecccccC
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPYLNT 45 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~--g~~v~~~K~DpYln~ 45 (466)
.|.|+|++ |.||=.+|..|-.+|+.. |.+|.++-+|-|+.-
T Consensus 88 iIgIaG~~--gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 88 IIGIAGSV--AVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred EEEEECCC--CCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 58899984 678999999999999874 789999999999864
No 293
>PRK06940 short chain dehydrogenase; Provisional
Probab=44.60 E-value=31 Score=33.89 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=23.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
|.++|||+ ||||+.++- .|. +|++|.+.=.|
T Consensus 3 k~~lItGa--~gIG~~la~-----~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIAR-----RVG-AGKKVLLADYN 33 (275)
T ss_pred CEEEEECC--ChHHHHHHH-----HHh-CCCEEEEEeCC
Confidence 78899997 899887654 343 69999886443
No 294
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.44 E-value=17 Score=36.68 Aligned_cols=36 Identities=31% Similarity=0.301 Sum_probs=28.9
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
.++|.+++=||=|. ++.+++.+...++|+|||=+|.
T Consensus 32 ~~~D~vi~iGGDGT-----~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDGF-----FVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHhcCCCCcEEEEecCC
Confidence 45799999998553 6678887777899999999874
No 295
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=44.40 E-value=62 Score=30.42 Aligned_cols=55 Identities=25% Similarity=0.278 Sum_probs=42.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc-cCCCCCCCccccce
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL-NTDAGTMSPFEHGE 57 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl-n~d~gtmsp~~hgE 57 (466)
||.+=|+| .|+-||=.....|-+.|+++||+|..+|-++== .+|.--=..|.|.+
T Consensus 2 ~~Il~ivG--~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~ 57 (161)
T COG1763 2 MKILGIVG--YKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRK 57 (161)
T ss_pred CcEEEEEe--cCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhc
Confidence 35555666 577889999999999999999999999987653 56665556665554
No 296
>PRK07890 short chain dehydrogenase; Provisional
Probab=43.87 E-value=29 Score=33.10 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=23.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
|.|||||| -++||.- +.+.|-++|++|.+.-.
T Consensus 6 k~vlItGa-~~~IG~~-----la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 6 KVVVVSGV-GPGLGRT-----LAVRAARAGADVVLAAR 37 (258)
T ss_pred CEEEEECC-CCcHHHH-----HHHHHHHcCCEEEEEeC
Confidence 68999998 5677754 45666688998887743
No 297
>PRK06101 short chain dehydrogenase; Provisional
Probab=43.67 E-value=27 Score=33.31 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=25.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
||-++||||. +|||+.+ .+.|.++|++|.+.=-
T Consensus 1 ~~~vlItGas-~giG~~l-----a~~L~~~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITGAT-SGIGKQL-----ALDYAKQGWQVIACGR 33 (240)
T ss_pred CcEEEEEcCC-cHHHHHH-----HHHHHhCCCEEEEEEC
Confidence 5789999995 8888655 4566678999987633
No 298
>PRK07933 thymidylate kinase; Validated
Probab=43.40 E-value=45 Score=32.18 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=32.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
+||.+-| +.|-||-.-+..|...|+++|++|...+.-
T Consensus 1 ~~IviEG--~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 1 MLIAIEG--VDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred CEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4788887 578899999999999999999999999874
No 299
>PRK04296 thymidine kinase; Provisional
Probab=43.22 E-value=57 Score=30.74 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=27.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeecccccC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPYLNT 45 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~--~~g~~v~~~K~DpYln~ 45 (466)
+.+++||.+ |+|-|++.++.+.. .+|.+|-++| |.+..
T Consensus 3 ~i~litG~~----GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~ 42 (190)
T PRK04296 3 KLEFIYGAM----NSGKSTELLQRAYNYEERGMKVLVFK--PAIDD 42 (190)
T ss_pred EEEEEECCC----CCHHHHHHHHHHHHHHHcCCeEEEEe--ccccc
Confidence 467778763 88889998888855 4799998884 54433
No 300
>PRK05854 short chain dehydrogenase; Provisional
Probab=42.98 E-value=25 Score=35.42 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=23.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||- ||||+.++ +.|..+|++|.+.
T Consensus 15 k~~lITGas-~GIG~~~a-----~~La~~G~~Vil~ 44 (313)
T PRK05854 15 KRAVVTGAS-DGLGLGLA-----RRLAAAGAEVILP 44 (313)
T ss_pred CEEEEeCCC-ChHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 89998654 4466789988765
No 301
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.69 E-value=54 Score=29.96 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcccCCCCCCCCcEEEEeeCcc--ccccCcchHHHHHHHhhhhcCC--CCEEEEEeeeee
Q 012331 119 DEIQDWIERVAMIPVDGKEGPVDVCVIELGGT--IGDIESMPFIEALGQFSYRVGP--GNFCLIHVSLVP 184 (466)
Q Consensus 119 ~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGt--vGdiEs~pf~ea~rq~~~~~g~--~n~~~ih~t~vp 184 (466)
.++.+++..+. ..+||+|+|.+|+- .......-|.+.+++|-..+.. .++-.+=+++.|
T Consensus 54 ~~~~~~l~~~~-------~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~ 116 (191)
T cd01836 54 ADLLRQLAPLP-------ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPP 116 (191)
T ss_pred HHHHHHHHhcc-------cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 45556666632 46899999999984 1111223466777777666544 344444445433
No 302
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=42.68 E-value=1.1e+02 Score=30.03 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=49.0
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCch
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~e 378 (466)
+|.+|+. -..+...|.++-+..|+..... +|++-. +..... .....||.|++.+= .
T Consensus 69 ~ILfVgT---k~~~~~~v~k~A~~~g~~~v~~---RWlgG~-LTN~~~-----------~~~~~Pdliiv~dp------~ 124 (204)
T PRK04020 69 KILVVSS---RQYGQKPVQKFAEVVGAKAITG---RFIPGT-LTNPSL-----------KGYIEPDVVVVTDP------R 124 (204)
T ss_pred eEEEEeC---CHHHHHHHHHHHHHhCCeeecC---ccCCCc-CcCcch-----------hccCCCCEEEEECC------c
Confidence 6888883 2234456666666667665432 687653 322110 12347899999872 2
Q ss_pred hHHHHHHHHHHcCCcEEEeh
Q 012331 379 GKILAAKYAREHRIPYLGIC 398 (466)
Q Consensus 379 G~i~aIk~are~~iPvLGIC 398 (466)
....|+++|..-++|+.|||
T Consensus 125 ~~~~AI~EA~kl~IP~Iaiv 144 (204)
T PRK04020 125 GDAQAVKEAIEVGIPVVALC 144 (204)
T ss_pred ccHHHHHHHHHhCCCEEEEE
Confidence 23678999999999999999
No 303
>PRK06851 hypothetical protein; Provisional
Probab=42.60 E-value=42 Score=35.62 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=33.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe--eecc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI--KIDP 41 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~--K~Dp 41 (466)
|.+++||| +|.||-.+...|+..|..+|+.|..+ -.||
T Consensus 31 ~~~il~G~--pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 31 RIFILKGG--PGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 67899998 79999999999999999999999987 4455
No 304
>PRK08177 short chain dehydrogenase; Provisional
Probab=42.29 E-value=40 Score=31.73 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=25.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
||-++||||. +++|+. +.+.|.++|++|..+-.+
T Consensus 1 ~k~vlItG~s-g~iG~~-----la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIGAS-RGLGLG-----LVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCEEEEeCCC-chHHHH-----HHHHHHhCCCEEEEEeCC
Confidence 6889999994 566654 556777889999877544
No 305
>PRK08727 hypothetical protein; Validated
Probab=42.11 E-value=19 Score=35.18 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=43.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccC
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDD 63 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~d 63 (466)
.++++|+ ||.||==.+.+++.-+...|++|..+-++-+.+.=+..++-++.=.+.|.||
T Consensus 43 ~l~l~G~--~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDD 101 (233)
T PRK08727 43 WLYLSGP--AGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDG 101 (233)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeC
Confidence 5899998 8999998899999999999999988766544332223334444456888886
No 306
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=41.74 E-value=16 Score=38.48 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=36.0
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc--CCCCCCCc
Q 012331 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN--TDAGTMSP 52 (466)
Q Consensus 10 v~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln--~d~gtmsp 52 (466)
+|.|.|-|=|.+++||-||+++..+.++=.||+-. .|++.-+|
T Consensus 216 ~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~ 260 (362)
T KOG1252|consen 216 FVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGP 260 (362)
T ss_pred EEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCC
Confidence 45678888899999999999999999999999854 46666666
No 307
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=41.73 E-value=73 Score=29.26 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.6
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 13 GLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 13 ~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
+=||..|++=|..+|+..|+.|...-
T Consensus 4 T~GKTTTt~ml~~iL~~~g~~~~~~~ 29 (188)
T PF08245_consen 4 TNGKTTTTRMLAHILSAAGKVVGTIG 29 (188)
T ss_dssp SSSHHHHHHHHHHHHHHTTEEEEEES
T ss_pred CCCHHHHHHHHHHHHHhcCCcccccc
Confidence 56999999999999999999888876
No 308
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=41.71 E-value=32 Score=32.60 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=21.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
+|-|+||||. ++||+.+ .+.|-++|++|.+
T Consensus 2 ~k~ilItGas-~giG~~l-----a~~l~~~g~~v~~ 31 (248)
T PRK06947 2 RKVVLITGAS-RGIGRAT-----AVLAAARGWSVGI 31 (248)
T ss_pred CcEEEEeCCC-CcHHHHH-----HHHHHHCCCEEEE
Confidence 5789999985 7888764 4556677887643
No 309
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=41.67 E-value=1.5e+02 Score=30.47 Aligned_cols=117 Identities=18% Similarity=0.292 Sum_probs=65.7
Q ss_pred CCeEEEEEeccCC-chhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHcc--CCCEEEecCCC
Q 012331 296 EPVRIAMVGKYTG-LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGF 372 (466)
Q Consensus 296 ~~v~IaIVgkY~g-~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~--~~DGIllPGGf 372 (466)
++.+|+|+. ..- -...-..+++.|... ...|.+.+.++++........ +.-.+|=..|++++ .+||.||.|.|
T Consensus 34 RPL~IlilN-LMP~Ki~TE~Q~lRLL~ns--PLQV~itll~~~sh~~KnTp~-eHl~~FY~tfeeVk~~~FDG~IiTGAP 109 (307)
T COG1897 34 RPLKILILN-LMPKKIETETQILRLLGNS--PLQVDITLLRIDSHESKNTPA-EHLNSFYCTFEEVKDQKFDGLIITGAP 109 (307)
T ss_pred ccceeeeee-cCchhHHHHHHHHHHhcCC--CceEEEEEEEecCcCCCCCcH-HHHHHHhhcHHHHhhcccCceEEeCCc
Confidence 357899986 322 001222344444332 345556677776654322110 11113333455554 69999999987
Q ss_pred CCC-C------chhHHHHHHHHHHcCCcEEEehHHHHHHHHHh-cccccccc
Q 012331 373 GNR-G------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF-ARSVLNLR 416 (466)
Q Consensus 373 G~r-g------~eG~i~aIk~are~~iPvLGICLGmQllaia~-Gr~v~klk 416 (466)
=.. . ++.+.+.+.+...+=.-.|=||-|.|...-.| |-.-+.|+
T Consensus 110 ve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~ 161 (307)
T COG1897 110 VELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLP 161 (307)
T ss_pred ccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccc
Confidence 552 2 23455666777777778999999999866543 43333344
No 310
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=41.60 E-value=20 Score=36.15 Aligned_cols=37 Identities=41% Similarity=0.534 Sum_probs=26.8
Q ss_pred ccCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHHH
Q 012331 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (466)
Q Consensus 360 L~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLGm 401 (466)
..++|.|++-||=|. ...+++.+...++|+|||=.|.
T Consensus 74 ~~~~D~ii~lGGDGT-----~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDGT-----FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHHH-----HHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCHH-----HHHHHHHhccCCCcEEeecCCC
Confidence 468999999998432 4556666656689999998763
No 311
>PRK06924 short chain dehydrogenase; Provisional
Probab=41.53 E-value=42 Score=31.88 Aligned_cols=31 Identities=39% Similarity=0.666 Sum_probs=23.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
||.|+||||- ++||+.+ .+-|-++|++|.++
T Consensus 1 ~k~vlItGas-ggiG~~i-----a~~l~~~g~~V~~~ 31 (251)
T PRK06924 1 MRYVIITGTS-QGLGEAI-----ANQLLEKGTHVISI 31 (251)
T ss_pred CcEEEEecCC-chHHHHH-----HHHHHhcCCEEEEE
Confidence 7899999975 6777655 45566789988775
No 312
>PRK03846 adenylylsulfate kinase; Provisional
Probab=41.52 E-value=44 Score=31.50 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=31.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
+.|.+||. ||-||=..+..|..+|..+|..+-.+--|++-
T Consensus 25 ~~i~i~G~--~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 25 VVLWFTGL--SGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred EEEEEECC--CCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 56888886 79999999999999998888877666555543
No 313
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=41.33 E-value=40 Score=31.49 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=32.3
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln 44 (466)
.|.++|+ ||-||=..+..|..+| .+.+|.++-.|.|..
T Consensus 1 iigi~G~--~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGG--SGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECC--CCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence 3788998 8999999999999988 567899999998764
No 314
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=40.70 E-value=1.5e+02 Score=26.84 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=21.4
Q ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEe
Q 012331 362 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (466)
Q Consensus 362 ~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGI 397 (466)
++|+|++++.... ...+.+.+.+.++|++.+
T Consensus 58 ~~d~ii~~~~~~~-----~~~~~~~~~~~~ip~v~~ 88 (269)
T cd01391 58 GVDGIIGPPSSSS-----ALAVVELAAAAGIPVVSL 88 (269)
T ss_pred CCCEEEecCCCHH-----HHHHHHHHHHcCCcEEEe
Confidence 6999999875421 112566777889998776
No 315
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=40.61 E-value=40 Score=35.40 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=31.5
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 012331 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (466)
Q Consensus 9 gv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln 44 (466)
.-=-|.||=.+|+.++..|..+|+||-++-+||--|
T Consensus 111 n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 111 NFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred ccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 344578999999999999999999999999999543
No 316
>PRK12742 oxidoreductase; Provisional
Probab=40.47 E-value=33 Score=32.18 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
|.|+|||| -++||+-+ .+.|.++|++|.+
T Consensus 7 k~vlItGa-sggIG~~~-----a~~l~~~G~~v~~ 35 (237)
T PRK12742 7 KKVLVLGG-SRGIGAAI-----VRRFVTDGANVRF 35 (237)
T ss_pred CEEEEECC-CChHHHHH-----HHHHHHCCCEEEE
Confidence 78999988 67888764 4677788988764
No 317
>PRK06398 aldose dehydrogenase; Validated
Probab=40.20 E-value=31 Score=33.38 Aligned_cols=30 Identities=43% Similarity=0.553 Sum_probs=23.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++|||| -+|||+-+ .+.|.++|++|.+.
T Consensus 7 k~vlItGa-s~gIG~~i-----a~~l~~~G~~Vi~~ 36 (258)
T PRK06398 7 KVAIVTGG-SQGIGKAV-----VNRLKEEGSNVINF 36 (258)
T ss_pred CEEEEECC-CchHHHHH-----HHHHHHCCCeEEEE
Confidence 78999998 47888764 46777899998865
No 318
>PRK07035 short chain dehydrogenase; Provisional
Probab=39.86 E-value=33 Score=32.72 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-++||||- |+|| .++.+.|.++|++|.++
T Consensus 9 k~vlItGas-~gIG-----~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 9 KIALVTGAS-RGIG-----EAIAKLLAQQGAHVIVS 38 (252)
T ss_pred CEEEEECCC-cHHH-----HHHHHHHHHCCCEEEEE
Confidence 679999886 6666 46667777889988766
No 319
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.73 E-value=35 Score=32.69 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=25.6
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 2 k~i~vtggv-~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
|.|+||||. .||||.. +.+.|..+|++|.+.=-
T Consensus 6 k~vlItGas~~~giG~~-----la~~l~~~G~~vi~~~r 39 (256)
T PRK12748 6 KIALVTGASRLNGIGAA-----VCRRLAAKGIDIFFTYW 39 (256)
T ss_pred cEEEEeCCCCCCCHHHH-----HHHHHHHcCCcEEEEcC
Confidence 679999998 5889876 45667778998877633
No 320
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=39.36 E-value=23 Score=31.69 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=26.9
Q ss_pred ccCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEE
Q 012331 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (466)
Q Consensus 360 L~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvL 395 (466)
|..||+++++.=+|-....|+-..++.|.+.++|++
T Consensus 77 L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~ 112 (116)
T PF09152_consen 77 LDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVF 112 (116)
T ss_dssp HHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEE
T ss_pred HHhcceeEEecCCCccccccHHHHHHHHHHcCCeEE
Confidence 567999999998888877899999999999999987
No 321
>PRK12828 short chain dehydrogenase; Provisional
Probab=39.16 E-value=40 Score=31.39 Aligned_cols=34 Identities=41% Similarity=0.572 Sum_probs=26.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
|.|+||||- +++| .++.+.|.++|++|.++--||
T Consensus 8 k~vlItGat-g~iG-----~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 8 KVVAITGGF-GGLG-----RATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CEEEEECCC-CcHh-----HHHHHHHHHCCCeEEEEeCCh
Confidence 679999986 6666 566677888899988776654
No 322
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=39.10 E-value=32 Score=36.54 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=23.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v 34 (466)
|+.|.+|||.-| || |+++++|+..|+.|
T Consensus 1 m~~IgltG~igs--GK----Stv~~~L~~~G~~v 28 (395)
T PRK03333 1 MLRIGLTGGIGA--GK----STVAARLAELGAVV 28 (395)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHCCCeE
Confidence 788999999866 45 57888999888875
No 323
>PRK11519 tyrosine kinase; Provisional
Probab=38.99 E-value=51 Score=37.79 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|.|.||+. .+|-||-.+|+.++..|...|.||-+|-.|+.
T Consensus 527 kvi~vts~-~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 527 NVLMMTGV-SPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 66778764 67999999999999999999999999999986
No 324
>PLN02913 dihydrofolate synthetase
Probab=38.95 E-value=21 Score=39.18 Aligned_cols=32 Identities=44% Similarity=0.610 Sum_probs=26.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
+.|=|+| .=|||-|+|-|..+|++.||||-..
T Consensus 76 ~vIhVaG----TNGKGSt~a~l~~iL~~aG~~vG~f 107 (510)
T PLN02913 76 KAVHVAG----TKGKGSTAAFLSNILRAQGYSVGCY 107 (510)
T ss_pred cEEEEeC----CCchHHHHHHHHHHHHhcCCCeEEE
Confidence 3566666 3599999999999999999999764
No 325
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=38.95 E-value=50 Score=33.16 Aligned_cols=162 Identities=20% Similarity=0.235 Sum_probs=97.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCC-ccccCCCCccccccCC
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG-GEVDLDLGNYERFMDI 80 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg-~e~dlDlg~yerf~~~ 80 (466)
+.|.||.| ..|.||-.+|+.|+..|..+|+||-++-.|=| .|..|-..=+ ++. +-+++--|.
T Consensus 58 ~~I~V~S~-kgGvGKStva~nLA~alA~~G~rVlliDaD~~--------gps~~~~l~~-~~~~g~~~~~~g~------- 120 (265)
T COG0489 58 NVIAVTSG-KGGVGKSTVAVNLAAALAQLGKRVLLLDADLR--------GPSIPRMLGL-ENLPGLTELLAGE------- 120 (265)
T ss_pred eEEEEEeC-CCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCC--------CCchHHHhCC-CCCCCcccccCCC-------
Confidence 45666665 47999999999999999999999999877755 3444432111 111 223333333
Q ss_pred CCCCCCcccchHhhHHHHhhhh-cCCCCCCeeEEcccc------hHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccc
Q 012331 81 KLTRDNNITTGKIYQSVIDKER-KGDYLGKTVQVVPHI------TDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD 153 (466)
Q Consensus 81 ~l~~~~n~t~gkiy~~vi~ker-~g~ylg~tvqviPHi------t~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGd 153 (466)
.++.++..-+ .+-..+-.+. .|++ +..+++.|..+. ...+|++||+..==.||
T Consensus 121 ------------~~~~~~~~~~~~~lsi~~~~~-~p~~~r~~l~s~~~~qll~~~~-------~~~~D~vIID~PP~~g~ 180 (265)
T COG0489 121 ------------ALEPVIQHDGIKVLSILPLGP-VPVIPRGLLGSKAMLQLLEDVL-------WGEYDYVIIDTPPGTGD 180 (265)
T ss_pred ------------ccccceecCccceEEEEecCC-CCCCChHhhhhHHHHHHHHHHh-------ccCCCEEEEeCCCCchH
Confidence 2333333221 2211111222 4444 466777777775 45699999999877777
Q ss_pred cCcchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEe
Q 012331 154 IESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (466)
Q Consensus 154 iEs~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~R 217 (466)
.. ++=++.-. +.+++ ..+.++....=.+.++..++..++..-|+|.-
T Consensus 181 ~d-------~~i~~~~~--~g~vi--------Vt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~N 227 (265)
T COG0489 181 AD-------ATVLQRIP--DGVVI--------VTTPGKTALEDVKKAIDMLEKAGIPVLGVVEN 227 (265)
T ss_pred HH-------HHHHhccC--CeEEE--------EeCCccchHHHHHHHHHHHHhcCCceEEEEec
Confidence 32 22222221 11221 22346666667778889999999999998876
No 326
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=38.82 E-value=42 Score=28.52 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.3
Q ss_pred cCCcchHHHHHHHHHHHHHC-CCeeEEeeecccc
Q 012331 11 VSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPYL 43 (466)
Q Consensus 11 ~s~~gkgi~~as~g~ll~~~-g~~v~~~K~DpYl 43 (466)
=.|.||=.++..++..|.+. |++|-++-+||.-
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~ 41 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF 41 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC
Confidence 36899999999999999998 9999999999974
No 327
>PRK08303 short chain dehydrogenase; Provisional
Probab=38.75 E-value=32 Score=34.73 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||- ||||+.++ +.|-+.|++|.+.
T Consensus 9 k~~lITGgs-~GIG~aia-----~~la~~G~~Vv~~ 38 (305)
T PRK08303 9 KVALVAGAT-RGAGRGIA-----VELGAAGATVYVT 38 (305)
T ss_pred CEEEEeCCC-chHHHHHH-----HHHHHCCCEEEEE
Confidence 789999986 78887654 5566789998765
No 328
>PLN02422 dephospho-CoA kinase
Probab=38.74 E-value=40 Score=33.46 Aligned_cols=28 Identities=43% Similarity=0.751 Sum_probs=22.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v 34 (466)
|+.|+||||.-| ||. +++.+|+..|+.|
T Consensus 1 M~~igltG~igs--GKs----tv~~~l~~~g~~~ 28 (232)
T PLN02422 1 MRVVGLTGGIAS--GKS----TVSNLFKSSGIPV 28 (232)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHCCCeE
Confidence 789999999766 564 5667788889876
No 329
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=38.59 E-value=2e+02 Score=27.30 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=19.9
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEe
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGI 397 (466)
.++|||++.++- . ......++++.+.++|+..+
T Consensus 54 ~~vdgii~~~~~--~--~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 54 QKVDAIIIQHGR--A--EVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred cCCCEEEEecCC--h--hhhHHHHHHHHHcCCCEEEe
Confidence 369999996531 1 11234456677778887544
No 330
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=38.57 E-value=33 Score=36.36 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeee-cccccC
Q 012331 12 SGLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNT 45 (466)
Q Consensus 12 s~~gkgi~~as~g~ll~~~g~~v~~~K~-DpYln~ 45 (466)
-|.||=.+|+.++..|..+|+||-+|-+ ||--|.
T Consensus 116 GGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl 150 (388)
T PRK13705 116 GGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred CCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch
Confidence 3569999999999999999999999995 997664
No 331
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=38.46 E-value=34 Score=33.02 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=22.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++|||| -+|||+.++ +.|-++|++|.+.
T Consensus 9 k~~lItGa-s~gIG~aia-----~~l~~~G~~vv~~ 38 (251)
T PRK12481 9 KVAIITGC-NTGLGQGMA-----IGLAKAGADIVGV 38 (251)
T ss_pred CEEEEeCC-CchHHHHHH-----HHHHHCCCEEEEe
Confidence 78999998 477776554 5566789988753
No 332
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=38.44 E-value=53 Score=33.26 Aligned_cols=35 Identities=46% Similarity=0.589 Sum_probs=28.2
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHH
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLG 400 (466)
..+|.|++-||=|. .+.+++++...++|++||=+|
T Consensus 54 ~~~d~ivvlGGDGt-----lL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDGT-----LLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcHH-----HHHHHHHhccCCCCEEEEeCC
Confidence 56888888887542 567788888888999999999
No 333
>PRK05480 uridine/cytidine kinase; Provisional
Probab=38.22 E-value=60 Score=30.62 Aligned_cols=38 Identities=32% Similarity=0.325 Sum_probs=31.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
..|.++| .||-||=..+..|...| .+.+|.++-.|+|.
T Consensus 7 ~iI~I~G--~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 7 IIIGIAG--GSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 4688888 68999999999999988 45678888888875
No 334
>PRK12829 short chain dehydrogenase; Provisional
Probab=38.04 E-value=40 Score=32.17 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=25.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
|.++||||- +++| .++...|.++|++|.++-.|
T Consensus 12 ~~vlItGa~-g~iG-----~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 12 LRVLVTGGA-SGIG-----RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CEEEEeCCC-CcHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 679999995 5554 67788888999998876533
No 335
>PRK09072 short chain dehydrogenase; Provisional
Probab=37.88 E-value=37 Score=32.69 Aligned_cols=33 Identities=33% Similarity=0.548 Sum_probs=24.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
|.++||||. ++||+.+ .+.|.++|++|.+.-.+
T Consensus 6 ~~vlItG~s-~~iG~~i-----a~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGAS-GGIGQAL-----AEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCC-chHHHHH-----HHHHHHCCCEEEEEECC
Confidence 569999887 7888654 56677889998877544
No 336
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=37.78 E-value=41 Score=35.37 Aligned_cols=61 Identities=25% Similarity=0.354 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchhHHHHHHHHHHc
Q 012331 311 DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREH 390 (466)
Q Consensus 311 Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG~i~aIk~are~ 390 (466)
++..-+.+.|..+|++..+ +..+.+. ..+..+|.||=.||-|.- +.|....+..
T Consensus 75 n~~~~~~~~l~k~gieskl------v~R~~ls---------------q~i~waD~VisvGGDGTf-----L~Aasrv~~~ 128 (395)
T KOG4180|consen 75 NAIKFCQEELSKAGIESKL------VSRNDLS---------------QPIRWADMVISVGGDGTF-----LLAASRVIDD 128 (395)
T ss_pred HHHHHHHHHHhhCCcceee------eehhhcc---------------CcCchhhEEEEecCccce-----eehhhhhhcc
Confidence 3556788999999998654 3333331 236778999999987752 3334446778
Q ss_pred CCcEEEe
Q 012331 391 RIPYLGI 397 (466)
Q Consensus 391 ~iPvLGI 397 (466)
++|++||
T Consensus 129 ~~PViGv 135 (395)
T KOG4180|consen 129 SKPVIGV 135 (395)
T ss_pred CCceeee
Confidence 9999998
No 337
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=37.66 E-value=1.4e+02 Score=32.60 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=45.8
Q ss_pred CeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCccc---------ccccCCchhhHHHHHHccCCCEEE
Q 012331 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED---------ATEKENPDAYKAAWKLLKGADGIL 367 (466)
Q Consensus 297 ~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~---------~~~~~~p~~y~~~~~~L~~~DGIl 367 (466)
..+|+++| ... +=.++.+.|...|+.+.+ .+...... ++.+ .....+.. +.+.++|-|+
T Consensus 7 ~~kv~V~G-LG~---sG~a~a~~L~~~G~~v~v------~D~~~~~~~~~~~~~~~~~i~-~~~g~~~~-~~~~~~d~vV 74 (448)
T COG0771 7 GKKVLVLG-LGK---SGLAAARFLLKLGAEVTV------SDDRPAPEGLAAQPLLLEGIE-VELGSHDD-EDLAEFDLVV 74 (448)
T ss_pred CCEEEEEe-ccc---ccHHHHHHHHHCCCeEEE------EcCCCCccchhhhhhhccCce-eecCccch-hccccCCEEE
Confidence 35899988 522 237899999999988876 23211110 0000 00000111 2356789999
Q ss_pred ecCCCCCCCchhHHHHHHHHHHcCCcEEE
Q 012331 368 VPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (466)
Q Consensus 368 lPGGfG~rg~eG~i~aIk~are~~iPvLG 396 (466)
+++|.... ...++.|+..++|++|
T Consensus 75 ~SPGi~~~-----~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 75 KSPGIPPT-----HPLVEAAKAAGIEIIG 98 (448)
T ss_pred ECCCCCCC-----CHHHHHHHHcCCcEEe
Confidence 99875432 1245555566666666
No 338
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=36.94 E-value=60 Score=29.88 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=42.8
Q ss_pred CEEEecCCCCCCCc---hhH-HHHHHHHHHcCCcEEEehHH--------HHHHHHHhccccccccCCCCccc
Q 012331 364 DGILVPGGFGNRGV---QGK-ILAAKYAREHRIPYLGICLG--------MQVAVIEFARSVLNLRDANSTEF 423 (466)
Q Consensus 364 DGIllPGGfG~rg~---eG~-i~aIk~are~~iPvLGICLG--------mQllaia~Gr~v~klk~a~s~Ef 423 (466)
--|+++-|....+. ... .++++.+++.+++++.|+.| |+-++-+-|++.+.+.++++.+|
T Consensus 101 ~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~ 172 (178)
T cd01451 101 LIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAI 172 (178)
T ss_pred EEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHH
Confidence 35666766544321 122 56677888999999999987 67788888888888888776654
No 339
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=36.91 E-value=42 Score=33.91 Aligned_cols=36 Identities=33% Similarity=0.564 Sum_probs=27.0
Q ss_pred EEEeCCccCCcchHHHHHH-HHHHHHHCCCeeEEeeecc
Q 012331 4 VLVTGGVVSGLGKGVTASS-IGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as-~g~ll~~~g~~v~~~K~Dp 41 (466)
|-|||= -|.||=..||. +-++++..||+|.++--||
T Consensus 3 IaI~GK--GG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 3 IAITGK--GGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred EEEecC--CCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 445542 36799999999 5555555569999999999
No 340
>PF12846 AAA_10: AAA-like domain
Probab=36.88 E-value=58 Score=31.53 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=29.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
.++|+|. +|-||=.++.++-.-+-.+|..|-++ ||
T Consensus 3 h~~i~G~--tGsGKT~~~~~l~~~~~~~g~~~~i~--D~ 37 (304)
T PF12846_consen 3 HTLILGK--TGSGKTTLLKNLLEQLIRRGPRVVIF--DP 37 (304)
T ss_pred eEEEECC--CCCcHHHHHHHHHHHHHHcCCCEEEE--cC
Confidence 4678885 79999999999998899999888777 76
No 341
>PRK13973 thymidylate kinase; Provisional
Probab=36.52 E-value=72 Score=30.51 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=30.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
+||++-| +.|-||..-+..|...|+++|++|....
T Consensus 4 ~~IviEG--~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFEG--GEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7999988 4799999999999999999999886554
No 342
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.51 E-value=42 Score=31.55 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
|.|+||||- +++| +.+.+.|.++|++|..
T Consensus 6 ~~vlItGa~-g~iG-----~~~a~~l~~~G~~V~~ 34 (238)
T PRK05786 6 KKVAIIGVS-EGLG-----YAVAYFALKEGAQVCI 34 (238)
T ss_pred cEEEEECCC-chHH-----HHHHHHHHHCCCEEEE
Confidence 689999994 6666 4555777788988766
No 343
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=36.38 E-value=1.9e+02 Score=27.33 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=31.3
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccc
Q 012331 12 SGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (466)
Q Consensus 12 s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~ 67 (466)
.|-||=.....+-..+. .+.+|.+++-|++-++|+-.+.... -+|....+|..+
T Consensus 31 ~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~~~-~~~~~l~~gcic 84 (207)
T TIGR00073 31 PGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRKYG-APAIQINTGKEC 84 (207)
T ss_pred CCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHHcC-CcEEEEcCCCcc
Confidence 34444333354444332 4589999999998788876655321 145555555443
No 344
>PRK08703 short chain dehydrogenase; Provisional
Probab=36.26 E-value=43 Score=31.66 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++|||| -++||+.+ .+.|.++|++|.+.
T Consensus 7 k~vlItG~-sggiG~~l-----a~~l~~~g~~V~~~ 36 (239)
T PRK08703 7 KTILVTGA-SQGLGEQV-----AKAYAAAGATVILV 36 (239)
T ss_pred CEEEEECC-CCcHHHHH-----HHHHHHcCCEEEEE
Confidence 78999987 68888765 45566789988763
No 345
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=36.25 E-value=41 Score=32.43 Aligned_cols=30 Identities=47% Similarity=0.674 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||- +|||+.+ .+.|..+|++|.+.
T Consensus 6 k~vlItGas-~gIG~~i-----a~~l~~~G~~V~~~ 35 (262)
T TIGR03325 6 EVVLVTGGA-SGLGRAI-----VDRFVAEGARVAVL 35 (262)
T ss_pred cEEEEECCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 789999984 7888654 46667789988764
No 346
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.16 E-value=71 Score=34.11 Aligned_cols=62 Identities=27% Similarity=0.442 Sum_probs=42.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC-C-CCccccceEEEccCCccccCCCCc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG-T-MSPFEHGEVFVLDDGGEVDLDLGN 73 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~g-t-msp~~hgEvfv~~dg~e~dlDlg~ 73 (466)
|.|-||| +-||-.|++=|+.+|+..|+++..-- |+-.. + +.+..-.+++|.+=+ |-+||+-|
T Consensus 115 ~vI~VTG----T~GKTTTt~ll~~iL~~~g~~~~~~g-----nig~~~~~~~~~~~~~~~V~E~~-~~~ld~t~ 178 (460)
T PRK01390 115 PFIAITG----TNGKSTTTALIAHILREAGRDVQMGG-----NIGTAVLTLEPPPAGRVYVLELS-SYQIDLAP 178 (460)
T ss_pred CEEEEeC----CCcHHHHHHHHHHHHHhcCCCeEEcC-----ccchhhhhcccCCCCCEEEEEcC-cccccccc
Confidence 5678888 67999999999999999999875432 32221 1 112223489999877 44566544
No 347
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.12 E-value=54 Score=36.77 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=32.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~--g~~v~~~K~DpY 42 (466)
+.|.++|. +|.||=.+++.|+..+..+ |.+|.++-.|+|
T Consensus 351 ~vIaLVGP--tGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 351 GVIALVGP--TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 35667775 7999999999999887665 589999999988
No 348
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=36.11 E-value=88 Score=29.64 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=31.7
Q ss_pred HHHcCCceeEEeEEEEeeCCC-cccccccCCchhhHHHHHHccC--C--CEEEecCCCCCCC
Q 012331 320 LLHASVDLRKKLVIDWIPACD-LEDATEKENPDAYKAAWKLLKG--A--DGILVPGGFGNRG 376 (466)
Q Consensus 320 L~~aG~~~~v~v~i~~i~s~~-l~~~~~~~~p~~y~~~~~~L~~--~--DGIllPGGfG~rg 376 (466)
|+..|+...+ +|-+. +........+..|...|+.+++ . .-+|+||..|...
T Consensus 36 Lk~~Gik~li------~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~ 91 (168)
T PF09419_consen 36 LKKKGIKALI------FDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD 91 (168)
T ss_pred hhhcCceEEE------EcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc
Confidence 7788887765 34333 3333333455667777877764 2 2589999888753
No 349
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=35.95 E-value=3.8e+02 Score=25.50 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=25.3
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEeh
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGIC 398 (466)
..||.||+.+- .....++++|...++|+.|||
T Consensus 126 ~~Pdlviv~~~------~~~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 126 RLPDLVIVLDP------RKEHQAIREASKLGIPVIAIV 157 (193)
T ss_pred cCCCEEEEeCC------ccchHHHHHHHHcCCCEEEEe
Confidence 46899999872 123568899999999999998
No 350
>PRK00698 tmk thymidylate kinase; Validated
Probab=35.90 E-value=68 Score=29.64 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=28.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
++|+|.| .+|-||-..+..|...|...|+.|...
T Consensus 4 ~~I~ieG--~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 4 MFITIEG--IDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 7999998 478899999999999999888766544
No 351
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=35.65 E-value=68 Score=29.57 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=28.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
+.|.++|. ||-||-..+..|...|+..|..+..+-
T Consensus 19 ~~i~i~G~--~GsGKstla~~l~~~l~~~~~~~~~l~ 53 (184)
T TIGR00455 19 VVIWLTGL--SGSGKSTIANALEKKLESKGYRVYVLD 53 (184)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 56788884 688999999999999998887664443
No 352
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=35.57 E-value=52 Score=25.92 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=30.0
Q ss_pred cchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccc
Q 012331 14 LGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFE 54 (466)
Q Consensus 14 ~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~ 54 (466)
+|=|++.-+.+..|+.+|++|+++--.+++- |.+..++
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G---G~~~~~~ 39 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKNDRLG---GRARSFR 39 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSSSSS---GGGCEEE
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCcccC---cceeEEE
Confidence 5778999999999999999999999888863 4444443
No 353
>PRK05876 short chain dehydrogenase; Provisional
Probab=35.41 E-value=43 Score=32.98 Aligned_cols=30 Identities=33% Similarity=0.514 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||- ||||+.+ ...|.++|++|.+.
T Consensus 7 k~vlVTGas-~gIG~al-----a~~La~~G~~Vv~~ 36 (275)
T PRK05876 7 RGAVITGGA-SGIGLAT-----GTEFARRGARVVLG 36 (275)
T ss_pred CEEEEeCCC-chHHHHH-----HHHHHHCCCEEEEE
Confidence 679999995 8998754 55677789988764
No 354
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=35.22 E-value=32 Score=35.54 Aligned_cols=65 Identities=29% Similarity=0.437 Sum_probs=40.3
Q ss_pred EEEEeCCcc---CCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccc--eEEEccCCccccCCCCccc
Q 012331 3 YVLVTGGVV---SGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHG--EVFVLDDGGEVDLDLGNYE 75 (466)
Q Consensus 3 ~i~vtggv~---s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hg--Evfv~~dg~e~dlDlg~ye 75 (466)
+|||||=.. .|.| +|=||++|+++||||-+|-==-+-|-+ +=-.=| ..|..--+|-.|-=+-||-
T Consensus 19 vilVtGDAYVDHPsFG----~AiIgR~Le~~GyrVgIiaQPdw~~~~----df~~lG~PrLff~VsaGn~DSMV~hYT 88 (302)
T PF08497_consen 19 VILVTGDAYVDHPSFG----AAIIGRVLEAHGYRVGIIAQPDWRSPE----DFKRLGRPRLFFGVSAGNMDSMVNHYT 88 (302)
T ss_pred EEEEeCcccccCcchh----HHHHHHHHHHcCCeEEEEeCCCCCChH----HHHHhCCCcEEEEEccccHHHHHHhhc
Confidence 788998764 3555 678999999999999998532221111 001112 3566666666665566664
No 355
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=35.21 E-value=48 Score=35.50 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=31.5
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 2 k~i~vtgg----------v~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|-++|||| .+|--.-|....++...|..+|.+|+++-
T Consensus 189 k~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 189 KRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred CEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 57899999 67777777788889999999999999874
No 356
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=35.01 E-value=41 Score=32.47 Aligned_cols=29 Identities=24% Similarity=0.614 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
|.++||||- +|||+.++- .|-++|++|.+
T Consensus 9 k~vlItGas-~gIG~~ia~-----~l~~~G~~v~~ 37 (260)
T PRK08416 9 KTLVISGGT-RGIGKAIVY-----EFAQSGVNIAF 37 (260)
T ss_pred CEEEEeCCC-chHHHHHHH-----HHHHCCCEEEE
Confidence 789999886 888887654 45567888754
No 357
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=34.84 E-value=50 Score=31.81 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=23.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
+++||||- +|||+.++- .+...+++.|++|.+.-
T Consensus 2 ~vlItGas-~GIG~~~a~-~la~~~~~~g~~V~~~~ 35 (256)
T TIGR01500 2 VCLVTGAS-RGFGRTIAQ-ELAKCLKSPGSVLVLSA 35 (256)
T ss_pred EEEEecCC-CchHHHHHH-HHHHhhccCCcEEEEEE
Confidence 68999986 999987654 33333445899987653
No 358
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=34.83 E-value=60 Score=32.37 Aligned_cols=34 Identities=41% Similarity=0.400 Sum_probs=27.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
|.|+||||- |-+.+.+.+.|.++|++|...-.|+
T Consensus 6 k~vlVtG~~------G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 6 KVVCVTGAS------GYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CEEEEECCc------hHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 789999974 6667788888888999998765555
No 359
>PRK08339 short chain dehydrogenase; Provisional
Probab=34.76 E-value=44 Score=32.55 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||- ||||+-+ .+.|-++|++|.+.
T Consensus 9 k~~lItGas-~gIG~ai-----a~~l~~~G~~V~~~ 38 (263)
T PRK08339 9 KLAFTTASS-KGIGFGV-----ARVLARAGADVILL 38 (263)
T ss_pred CEEEEeCCC-CcHHHHH-----HHHHHHCCCEEEEE
Confidence 789999986 7787754 45577789988764
No 360
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=34.74 E-value=52 Score=34.44 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=28.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|.|=||| .=|||-|++=|..+|++.|+||-..-
T Consensus 19 ~vI~VtG----TNGKgSt~~~l~~iL~~~g~~vg~~t 51 (397)
T TIGR01499 19 PVIHVAG----TNGKGSTCAFLESILRAAGYKVGLFT 51 (397)
T ss_pred CEEEEeC----CCChHHHHHHHHHHHHHcCCCeeEEe
Confidence 5677777 46999999999999999999997653
No 361
>PRK06197 short chain dehydrogenase; Provisional
Probab=34.64 E-value=42 Score=33.41 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.|+||||. +|||+.++ +.|.++|++|.+.
T Consensus 17 k~vlItGas-~gIG~~~a-----~~l~~~G~~vi~~ 46 (306)
T PRK06197 17 RVAVVTGAN-TGLGYETA-----AALAAKGAHVVLA 46 (306)
T ss_pred CEEEEcCCC-CcHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 78887654 4466678887654
No 362
>PRK05642 DNA replication initiation factor; Validated
Probab=34.58 E-value=29 Score=33.93 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=45.3
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCC
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG 64 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg 64 (466)
.+|+.|. +|.||==-+.+++.-+..+|.+|..+..+=+.+-.+..+..++...+.+.||=
T Consensus 47 ~l~l~G~--~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGK--DGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDL 106 (234)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEech
Confidence 4678886 79999988999999888899999888776655543444555666677777764
No 363
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=34.56 E-value=3.4e+02 Score=25.20 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHH---ccCCCEEEecCCCCCCCchhHHHHHHHHH
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL---LKGADGILVPGGFGNRGVQGKILAAKYAR 388 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~---L~~~DGIllPGGfG~rg~eG~i~aIk~ar 388 (466)
+-..+...|+..|+++... ..+ +++.+ .-.++... ..++|-|+..||-|--...-..++++.+.
T Consensus 23 n~~~l~~~L~~~G~~v~~~---~iv-~Dd~~---------~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l~ 89 (163)
T TIGR02667 23 SGQYLVERLTEAGHRLADR---AIV-KDDIY---------QIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPLF 89 (163)
T ss_pred cHHHHHHHHHHCCCeEEEE---EEc-CCCHH---------HHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHHH
Confidence 4456777799999876431 112 32221 11111122 24699999999755432223445666665
Q ss_pred HcCCc
Q 012331 389 EHRIP 393 (466)
Q Consensus 389 e~~iP 393 (466)
+..+|
T Consensus 90 ~~~l~ 94 (163)
T TIGR02667 90 DKTVE 94 (163)
T ss_pred CCcCC
Confidence 55555
No 364
>PRK00889 adenylylsulfate kinase; Provisional
Probab=34.56 E-value=80 Score=28.82 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=30.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
+.|.++| .+|-||=..|..|...|+..|.+|..+--|.
T Consensus 5 ~~i~~~G--~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTG--LSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 4566776 6899999999999999999998887775553
No 365
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.26 E-value=48 Score=32.61 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.2
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~-s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||-= ||||+.++ +.|-+.|++|.+.
T Consensus 8 k~~lVTGas~~~GIG~aiA-----~~la~~Ga~V~~~ 39 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIA-----KQLAAQGAELAFT 39 (271)
T ss_pred CEEEEeCCCCCCcHHHHHH-----HHHHhCCCEEEEe
Confidence 7899999986 69998765 4566789988653
No 366
>PRK05993 short chain dehydrogenase; Provisional
Probab=34.20 E-value=45 Score=32.67 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=24.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
|.++|||| -+|||+.+ .+.|.++|++|.+.--+
T Consensus 5 k~vlItGa-sggiG~~l-----a~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGC-SSGIGAYC-----ARALQSDGWRVFATCRK 37 (277)
T ss_pred CEEEEeCC-CcHHHHHH-----HHHHHHCCCEEEEEECC
Confidence 68999998 47888654 56677889998876433
No 367
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.17 E-value=46 Score=32.38 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=22.9
Q ss_pred EEEEEeCC-ccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGG-VVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtgg-v~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
|.++|||| --+|||+.++ +.|-++|++|.+
T Consensus 7 k~~lITGa~~~~GIG~a~a-----~~l~~~G~~v~~ 37 (261)
T PRK08690 7 KKILITGMISERSIAYGIA-----KACREQGAELAF 37 (261)
T ss_pred cEEEEECCCCCCcHHHHHH-----HHHHHCCCEEEE
Confidence 68999998 4689998754 446678998854
No 368
>PRK14528 adenylate kinase; Provisional
Probab=33.82 E-value=45 Score=31.25 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=20.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll 27 (466)
||.|+|+|+ +|-||+..|.-|+.-+
T Consensus 1 ~~~i~i~G~--pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 1 MKNIIFMGP--PGAGKGTQAKILCERL 25 (186)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 688999998 8999999888776543
No 369
>PRK09620 hypothetical protein; Provisional
Probab=33.74 E-value=57 Score=32.11 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=31.4
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtgg----------v~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-|+||+| .+|--=-|-+.+.|...|..+|++|+++
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li 49 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYL 49 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEE
Confidence 55889988 6777777999999999999999999886
No 370
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.68 E-value=82 Score=31.97 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=22.8
Q ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHH
Q 012331 362 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (466)
Q Consensus 362 ~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLG 400 (466)
++|.++.=||=|. .+.+++. ...|+|||=+|
T Consensus 52 ~~D~vi~lGGDGT-----~L~a~~~---~~~PilGIN~G 82 (271)
T PRK01185 52 NADVIITIGGDGT-----ILRTLQR---AKGPILGINMG 82 (271)
T ss_pred CCCEEEEEcCcHH-----HHHHHHH---cCCCEEEEECC
Confidence 7899999998653 3444443 35699999988
No 371
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=33.64 E-value=44 Score=32.36 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=22.9
Q ss_pred CcchHHHHHHHHHHHHH--CCCeeEEeeec
Q 012331 13 GLGKGVTASSIGVLLKA--CGLRVTCIKID 40 (466)
Q Consensus 13 ~~gkgi~~as~g~ll~~--~g~~v~~~K~D 40 (466)
|=|||-|+|++|..+++ +|++|.++.|=
T Consensus 30 g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 30 GNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred CCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 46999999999999886 57888887763
No 372
>PRK07024 short chain dehydrogenase; Provisional
Probab=33.57 E-value=46 Score=32.01 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=23.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
+|-++|||| -|+||+.++ ..|.++|++|.+.=.
T Consensus 2 ~~~vlItGa-s~gIG~~la-----~~l~~~G~~v~~~~r 34 (257)
T PRK07024 2 PLKVFITGA-SSGIGQALA-----REYARQGATLGLVAR 34 (257)
T ss_pred CCEEEEEcC-CcHHHHHHH-----HHHHHCCCEEEEEeC
Confidence 367999998 577877655 446677998877543
No 373
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=33.43 E-value=83 Score=24.58 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=23.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|+++|. +|-||...+..+...| .|.++..+.
T Consensus 2 i~i~G~--~gsGKst~~~~l~~~l--~~~~~~~i~ 32 (69)
T cd02019 2 IAITGG--SGSGKSTVAKKLAEQL--GGRSVVVLD 32 (69)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--cCCCEEEEe
Confidence 678886 5667988888777777 577777664
No 374
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=33.01 E-value=92 Score=33.48 Aligned_cols=37 Identities=19% Similarity=0.457 Sum_probs=28.7
Q ss_pred CCcEEEEe-eCccccccC-cchHHHHHHHhhhhcCCCCEEEE
Q 012331 139 PVDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLI 178 (466)
Q Consensus 139 ~~d~~i~E-igGtvGdiE-s~pf~ea~rq~~~~~g~~n~~~i 178 (466)
+.=.+|+| |-|.-|++. +--|+.++|++..+.| +++|
T Consensus 215 ~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g---~llI 253 (442)
T PRK13360 215 TIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHG---ILLI 253 (442)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcC---CEEE
Confidence 34478899 777888875 5679999999999976 5554
No 375
>PRK05717 oxidoreductase; Validated
Probab=32.91 E-value=48 Score=31.75 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||- ++||+.+ .+.|-++|++|.++
T Consensus 11 k~vlItG~s-g~IG~~~-----a~~l~~~g~~v~~~ 40 (255)
T PRK05717 11 RVALVTGAA-RGIGLGI-----AAWLIAEGWQVVLA 40 (255)
T ss_pred CEEEEeCCc-chHHHHH-----HHHHHHcCCEEEEE
Confidence 779999995 6666654 46666778888776
No 376
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=32.88 E-value=53 Score=33.47 Aligned_cols=54 Identities=33% Similarity=0.568 Sum_probs=37.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvfv~~dg~e~dlDlg~yerf~~ 79 (466)
|=+||- -|.||=.....+++.|.++|.+|.++-+||= |||-.|-. ||.=-|.-.
T Consensus 32 iGiTG~--PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS--------Sp~tGGAl------------LGDRiRM~~ 85 (266)
T PF03308_consen 32 IGITGP--PGAGKSTLIDALIRELRERGKRVAVLAVDPS--------SPFTGGAL------------LGDRIRMQE 85 (266)
T ss_dssp EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG--------GGCC---S------------S--GGGCHH
T ss_pred EEeeCC--CCCcHHHHHHHHHHHHhhcCCceEEEEECCC--------CCCCCCcc------------cccHHHhcC
Confidence 345653 5889999999999999999999999999995 78888875 777666543
No 377
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=32.82 E-value=89 Score=26.40 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.3
Q ss_pred EEEEEeCCccCCcchHHH-HHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVT-ASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~-~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|.++||| ||+|-... +..+=.+|+++|+.+.+...+.+
T Consensus 4 kILvvCg---sG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~ 42 (94)
T PRK10310 4 KIIVACG---GAVATSTMAAEEIKELCQSHNIPVELIQCRVN 42 (94)
T ss_pred eEEEECC---CchhHHHHHHHHHHHHHHHCCCeEEEEEecHH
Confidence 4678888 57777777 67888999999999998886654
No 378
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.72 E-value=2.3e+02 Score=24.07 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=27.6
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHH
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLG 400 (466)
.+-|-+|+-.-.|. ....+++++.|++++.|+++||-.
T Consensus 46 ~~~d~vi~iS~sG~--t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 46 TPGDVVIAISNSGE--TDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34466666654443 344788999999999999999853
No 379
>PLN02624 ornithine-delta-aminotransferase
Probab=32.56 E-value=1.1e+02 Score=33.12 Aligned_cols=32 Identities=13% Similarity=0.342 Sum_probs=25.3
Q ss_pred CcEEEEe-eCccccccCcch-HHHHHHHhhhhcC
Q 012331 140 VDVCVIE-LGGTIGDIESMP-FIEALGQFSYRVG 171 (466)
Q Consensus 140 ~d~~i~E-igGtvGdiEs~p-f~ea~rq~~~~~g 171 (466)
.-.+|+| +-|.-|.+-.-+ ||+++|++..+.|
T Consensus 225 iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~g 258 (474)
T PLN02624 225 IAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHN 258 (474)
T ss_pred EEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 4468888 777778876555 9999999999875
No 380
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=32.56 E-value=77 Score=32.96 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=48.8
Q ss_pred cchHhhHHHHhhhhcCC-------CCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc----
Q 012331 89 TTGKIYQSVIDKERKGD-------YLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM---- 157 (466)
Q Consensus 89 t~gkiy~~vi~ker~g~-------ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~---- 157 (466)
....+|.+..++-|--. +.|.|.+-.|+ ++..+..-+ ....|++++|++|| .|.=+-
T Consensus 75 ~~~S~y~rl~~~n~c~hrd~qN~G~sGatSrdl~~-------~l~~Ll~n~---~~~~P~lVtI~lGg--ND~C~g~~d~ 142 (305)
T cd01826 75 FTDSLYLRLRERNRCNHRDYQNLGVNGASSRNLLS-------IIKSIARNR---TTDKPALVIYSMIG--NDVCNGPNDT 142 (305)
T ss_pred ccccHHHHHhhccccchhhHHHhccchhhhHHHHH-------HHHHhcccc---ccCCCeEEEEEecc--chhhcCCCcc
Confidence 34568999888765443 57777666664 444433111 23468999999999 887431
Q ss_pred -----h------HHHHHHHhhhhcCCC
Q 012331 158 -----P------FIEALGQFSYRVGPG 173 (466)
Q Consensus 158 -----p------f~ea~rq~~~~~g~~ 173 (466)
| +.+++++||....+.
T Consensus 143 ~~~tp~eefr~NL~~~L~~Lr~~lP~~ 169 (305)
T cd01826 143 INHTTPEEFYENVMEALKYLDTKLPNG 169 (305)
T ss_pred ccCcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 788999999988664
No 381
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.50 E-value=53 Score=31.46 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
|.++||||- |+||+. +.+.|-++|++|.+
T Consensus 8 k~~lItGas-~gIG~~-----~a~~l~~~G~~v~~ 36 (255)
T PRK06463 8 KVALITGGT-RGIGRA-----IAEAFLREGAKVAV 36 (255)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCEEEE
Confidence 789999995 888865 45667778998865
No 382
>PRK05866 short chain dehydrogenase; Provisional
Probab=32.50 E-value=46 Score=33.24 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=21.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.|+|||| -||||+.++ +.|.++|++|.+.
T Consensus 41 k~vlItGa-sggIG~~la-----~~La~~G~~Vi~~ 70 (293)
T PRK05866 41 KRILLTGA-SSGIGEAAA-----EQFARRGATVVAV 70 (293)
T ss_pred CEEEEeCC-CcHHHHHHH-----HHHHHCCCEEEEE
Confidence 67999998 477776554 4566779887664
No 383
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=32.39 E-value=53 Score=26.81 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEE-EccCCccccCCC
Q 012331 16 KGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVF-VLDDGGEVDLDL 71 (466)
Q Consensus 16 kgi~~as~g~ll~~~g~~v~~~K~DpYln~d~gtmsp~~hgEvf-v~~dg~e~dlDl 71 (466)
..++.+.+=..|+..||+|.-+|+|- |.+ =||. ...||...++.+
T Consensus 27 ~~~~~~~~~~~l~~~G~~v~~ve~~~----~g~-------yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 27 DWLSIEQAVAKLEAQGYQVREVEFDD----DGC-------YEVEARDKDGKKVEVYV 72 (83)
T ss_pred ccCCHHHHHHHHHhcCCceEEEEEcC----CCE-------EEEEEEECCCCEEEEEE
Confidence 33456777788999999999999941 101 2888 778888887754
No 384
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=32.14 E-value=36 Score=35.64 Aligned_cols=79 Identities=22% Similarity=0.455 Sum_probs=48.8
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-----C-----CCCCCcccc-c---eEEEccCCc-cccCCCCccc
Q 012331 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-----D-----AGTMSPFEH-G---EVFVLDDGG-EVDLDLGNYE 75 (466)
Q Consensus 11 ~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln~-----d-----~gtmsp~~h-g---Evfv~~dg~-e~dlDlg~ye 75 (466)
+.|++||-++--+..+|++.|.+=.++-+=-=+-+ | -|-=+|+.. + .++-+.|++ -| =|+||
T Consensus 183 LggIaKGyavD~a~~~L~~~Gv~~~lV~~GGdi~~~G~~~~g~~W~VgI~~P~~~~~~~~~~~~l~~~avaT---SG~Ye 259 (350)
T PRK10461 183 LSTVGEGYAADHLARLMEQEGISRYLVSVGGALSSRGMNGEGQPWRVAIQKPTDKENAVQAVVDINGHGIST---SGSYR 259 (350)
T ss_pred cchhHHHHHHHHHHHHHHHCCCCEEEEEcCCcEEEECCCCCCCCCEEEEcCCCCCCCCceEEEEeCCCEEEe---cCcce
Confidence 57899999999999999999976655544221111 0 122345321 1 133334443 22 58999
Q ss_pred cccCCCCCCCCcccchHhhHHHHhhh
Q 012331 76 RFMDIKLTRDNNITTGKIYQSVIDKE 101 (466)
Q Consensus 76 rf~~~~l~~~~n~t~gkiy~~vi~ke 101 (466)
||...+ ||-|+++|+--
T Consensus 260 r~~~~~---------g~ry~HIidP~ 276 (350)
T PRK10461 260 NYYELD---------GKRLSHVIDPQ 276 (350)
T ss_pred eEEEeC---------CeEEEEeecCC
Confidence 997543 77788888653
No 385
>PRK07831 short chain dehydrogenase; Provisional
Probab=32.02 E-value=58 Score=31.33 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-++||||.=||||..++ +.|.++|++|.+.
T Consensus 18 k~vlItG~sg~gIG~~ia-----~~l~~~G~~V~~~ 48 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATA-----RRALEEGARVVIS 48 (262)
T ss_pred CEEEEECCCcccHHHHHH-----HHHHHcCCEEEEE
Confidence 679999997568886554 6677889987663
No 386
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=32.02 E-value=2.1e+02 Score=31.06 Aligned_cols=63 Identities=19% Similarity=0.347 Sum_probs=40.6
Q ss_pred CcEEEEe-eCccccccC-cchHHHHHHHhhhhcCCCCEEEEEeeeeeeecCCCccccCc--hhhhHHHhhcCCCcccEEE
Q 012331 140 VDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKP--TQHSVRGLRGQGLTPNILA 215 (466)
Q Consensus 140 ~d~~i~E-igGtvGdiE-s~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKp--tQhsvk~LrS~GI~pd~lV 215 (466)
.=-+|+| |-|.-|-+. +--|++++|++..+.| +++|. .|..|== | -..-..+..|+.||+++
T Consensus 232 iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~g---iLlI~----------DEV~tGfGRt-G~~~a~e~~gv~PDiv~ 297 (464)
T PRK06938 232 PAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAG---IPLIV----------DEIQSGFGRT-GKMFAFEHAGIIPDVVV 297 (464)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC---CEEEE----------eccccCCCcC-cHHHHHHhcCCCCCEEE
Confidence 4567888 656556653 5789999999999976 66663 2333200 1 01112345799999987
Q ss_pred E
Q 012331 216 C 216 (466)
Q Consensus 216 ~ 216 (466)
+
T Consensus 298 ~ 298 (464)
T PRK06938 298 L 298 (464)
T ss_pred e
Confidence 7
No 387
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.67 E-value=58 Score=31.40 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.0
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv-~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-++||||- .+|||+. +.+.|.++|.+|.+.
T Consensus 7 k~vlVtGas~~~giG~~-----~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAA-----ICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHHH-----HHHHHHHCCCeEEEE
Confidence 789999998 4899965 456677789887654
No 388
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=31.63 E-value=1e+02 Score=29.15 Aligned_cols=107 Identities=20% Similarity=0.093 Sum_probs=62.7
Q ss_pred hhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHhhhhcCCCCEEEEEe
Q 012331 101 ERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180 (466)
Q Consensus 101 er~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~ea~rq~~~~~g~~n~~~ih~ 180 (466)
.=+|.|-|...++=..+.+++.++|++..+ ..+.=+++-.+||-=|===+...+|.+|+ ++.. + +-.
T Consensus 52 ~~~G~~~~~~~~~g~~~~~~~~~~ir~~le------~~d~~~i~~slgGGTGsG~~~~i~~~~~~----~~~~-~--~~~ 118 (192)
T smart00864 52 WTRGLGAGADPEVGREAAEESLDEIREELE------GADGVFITAGMGGGTGTGAAPVIAEIAKE----YGIL-T--VAV 118 (192)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHHhc------CCCEEEEeccCCCCccccHHHHHHHHHHH----cCCc-E--EEE
Confidence 346889888888888899999999998864 12222445567774444334455666663 3422 2 444
Q ss_pred eeeeeecCCCccccCchhhhHHHhhcCCCcccEEEEecCCCCCc
Q 012331 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDD 224 (466)
Q Consensus 181 t~vp~~~~~~e~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~l~s 224 (466)
...|.. .|-.+.| +.++..|+.+.=..|.+++=+-..+..
T Consensus 119 ~v~P~~---~e~~~~~-~Na~~~l~~l~~~~d~~i~~dN~~l~~ 158 (192)
T smart00864 119 VTKPFV---FEGVVRP-YNAELGLEELREHVDSLIVIDNDALLD 158 (192)
T ss_pred EEEeEe---ecchhHH-HHHHHHHHHHHHhCCEEEEEEhHHHHH
Confidence 566733 3333322 344444444444678887766554433
No 389
>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=31.48 E-value=44 Score=35.18 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=54.6
Q ss_pred eeeeeecC--CCccccCchhhhHHHhhcCCCcccEEE-----------------EecCCCCCcchhcccCccCCCCCCCe
Q 012331 181 SLVPVLNV--VGEQKTKPTQHSVRGLRGQGLTPNILA-----------------CRSTVALDDNVKGKLSQFCHVPEQNI 241 (466)
Q Consensus 181 t~vp~~~~--~~e~KtKptQhsvk~LrS~GI~pd~lV-----------------~Rs~~~l~s~~r~KisL~~~l~~~~V 241 (466)
++-||... +-.-|.|--||++.+|.+.-..|+++= |..--|+|++|++|-- +|.-++-
T Consensus 114 ~~~~~~ee~ls~~k~Rk~~~~~~~qLK~~vpyp~I~Ew~D~~~~dP~~l~~~K~~~N~VPVPrHW~sk~~---ylsg~~~ 190 (429)
T COG5182 114 RMKPYREESLSRQKKRKALQHRYEQLKLVVPYPEIFEWEDATCPDPMSLNRMKGCSNGVPVPRHWRSKSR---YLSGHGY 190 (429)
T ss_pred ccCccchhhhHHHHHHHHhhhhHHHHhccCCccceeeeecCCCCChhhhhhhccCCCCCCCchhhhhhhh---ccccccc
Confidence 45566532 234467889999999999988888763 3334588999998854 5544433
Q ss_pred eecCCCCcc-chhhHHHHHcchhhh
Q 012331 242 ITLYDVPNI-WHIPLLLRDQKAHEA 265 (466)
Q Consensus 242 i~i~dVdTr-Y~lpl~LreqG~~~~ 265 (466)
..-| |++|.+++..|+.+.
T Consensus 191 -----~~~r~felP~~I~~TgI~qm 210 (429)
T COG5182 191 -----HKPRPFELPRHIIGTGIPQM 210 (429)
T ss_pred -----CCCCcccchHHHhhcChHHH
Confidence 4445 999999999988653
No 390
>PRK06523 short chain dehydrogenase; Provisional
Probab=31.31 E-value=65 Score=30.82 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=24.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
|.|+||||- +|||. ++.+.|.++|++|.+.-.+
T Consensus 10 k~vlItGas-~gIG~-----~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 10 KRALVTGGT-KGIGA-----ATVARLLEAGARVVTTARS 42 (260)
T ss_pred CEEEEECCC-CchhH-----HHHHHHHHCCCEEEEEeCC
Confidence 679999984 56764 5666777889999887554
No 391
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.27 E-value=40 Score=34.23 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=28.0
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHH
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLG 400 (466)
.++|-+++=||=|. .+.+++.+...++|+|||=+|
T Consensus 41 ~~~d~vi~iGGDGT-----~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 41 QRAQLAIVIGGDGN-----MLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCC
Confidence 36899999998653 566777776778999999987
No 392
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=31.20 E-value=60 Score=32.40 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=23.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRV 34 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~-~g~~v 34 (466)
|+.|.+|||.-|| | |++.++|++ .|+.|
T Consensus 1 M~iIGlTGgIgSG--K----StVs~~L~~~~G~~v 29 (244)
T PTZ00451 1 MILIGLTGGIACG--K----STVSRILREEHHIEV 29 (244)
T ss_pred CeEEEEECCCCCC--H----HHHHHHHHHHcCCeE
Confidence 7889999998774 4 678899998 59877
No 393
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=31.17 E-value=2.5e+02 Score=26.78 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=20.9
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEe
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGI 397 (466)
.++|||++.+...+ .....++.+.+.++|+..+
T Consensus 54 ~~vdgiIi~~~~~~----~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 54 QGVDVIILAPVVET----GWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred cCCCEEEEcCCccc----cchHHHHHHHHCCCCEEEE
Confidence 46999999763211 1123456777778887655
No 394
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=31.13 E-value=1.1e+02 Score=30.33 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=49.9
Q ss_pred eEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHH--ccCCCEEEecCCCCCC
Q 012331 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPGGFGNR 375 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~--L~~~DGIllPGGfG~r 375 (466)
-||+++-.|.. +.-..+.+.|+.+|+++..... ..-++- .+-...+|+.-.++... -.++|+||+++. +-|
T Consensus 121 ~RIalvTPY~~--~v~~~~~~~l~~~G~eV~~~~~---~~~~~~-~~ia~i~p~~i~~~~~~~~~~~aDAifisCT-nLr 193 (239)
T TIGR02990 121 RRISLLTPYTP--ETSRPMAQYFAVRGFEIVNFTC---LGLTDD-REMARISPDCIVEAALAAFDPDADALFLSCT-ALR 193 (239)
T ss_pred CEEEEECCCcH--HHHHHHHHHHHhCCcEEeeeec---cCCCCC-ceeeecCHHHHHHHHHHhcCCCCCEEEEeCC-Cch
Confidence 38999999954 3345678889999998854211 111000 00000122221112222 246899999972 112
Q ss_pred CchhHHHHHHHHHHcCCcEEEehHHHHHHHHHh
Q 012331 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 376 g~eG~i~aIk~are~~iPvLGICLGmQllaia~ 408 (466)
. -..++.++. +-++|++-. .|.++-+.
T Consensus 194 t-~~vi~~lE~--~lGkPVlsS---Nqat~W~~ 220 (239)
T TIGR02990 194 A-ATCAQRIEQ--AIGKPVVTS---NQATAWRC 220 (239)
T ss_pred h-HHHHHHHHH--HHCCCEEEH---HHHHHHHH
Confidence 1 123333332 358999875 45555433
No 395
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=30.76 E-value=67 Score=30.17 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=31.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
-++++|. +|.||=-.|++||.-+-.+|++|..+..+-.+
T Consensus 49 ~l~l~G~--~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 49 NLILYGP--PGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred EEEEEhh--HhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 4778886 79999999999999888899999998876443
No 396
>PRK07063 short chain dehydrogenase; Provisional
Probab=30.74 E-value=59 Score=31.16 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-++||||- +|||+. +.+.|-++|++|.+.
T Consensus 8 k~vlVtGas-~gIG~~-----~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 8 KVALVTGAA-QGIGAA-----IARAFAREGAAVALA 37 (260)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999985 788754 446677889988764
No 397
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=30.70 E-value=65 Score=29.29 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=20.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll 27 (466)
+++|+|+|+ +|-||...+..|..-+
T Consensus 3 ~~ii~i~G~--~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG--PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 468999998 9999999998887643
No 398
>PRK08017 oxidoreductase; Provisional
Probab=30.63 E-value=61 Score=30.78 Aligned_cols=32 Identities=41% Similarity=0.472 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
|-|+|||| -+++|+ ++.+.|.++|++|.+.-.
T Consensus 3 k~vlVtGa-sg~IG~-----~la~~l~~~g~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGC-SSGIGL-----EAALELKRRGYRVLAACR 34 (256)
T ss_pred CEEEEECC-CChHHH-----HHHHHHHHCCCEEEEEeC
Confidence 67999998 466665 455667788999877543
No 399
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=30.60 E-value=51 Score=31.71 Aligned_cols=29 Identities=38% Similarity=0.382 Sum_probs=21.8
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
-++||||- +|||+.+ .+.|..+|++|.+.
T Consensus 2 ~vlItGas-~gIG~ai-----a~~l~~~G~~V~~~ 30 (259)
T PRK08340 2 NVLVTASS-RGIGFNV-----ARELLKKGARVVIS 30 (259)
T ss_pred eEEEEcCC-cHHHHHH-----HHHHHHcCCEEEEE
Confidence 37899985 7888765 45677889988764
No 400
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=30.36 E-value=2.6e+02 Score=26.61 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=21.0
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEe
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGI 397 (466)
.++|||++.+...+ .....++.+.+.++|+..+
T Consensus 56 ~~vdgiIi~~~~~~----~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 56 KGYKGLLFSPISDV----NLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred hCCCEEEECCCChH----HhHHHHHHHHHCCCeEEEE
Confidence 46999988653211 1223466777889998765
No 401
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=30.26 E-value=71 Score=30.16 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=20.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v 34 (466)
|+.|.||||.-| ||. +++.+|++.|+.|
T Consensus 2 ~~~i~ltG~~gs--GKs----t~~~~l~~~g~~~ 29 (194)
T PRK00081 2 MLIIGLTGGIGS--GKS----TVANLFAELGAPV 29 (194)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHcCCEE
Confidence 567999999755 564 5667777777643
No 402
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=30.06 E-value=65 Score=31.40 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=26.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
|+|||| .|-+-+.|..-|.++|+.|..+.-.+
T Consensus 3 ILVtG~------tGfiG~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 3 ILVTGG------AGFIGSHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EEEEcC------cccHHHHHHHHHHhCCCeEEEEeCCC
Confidence 899998 56677889999999999988776433
No 403
>PRK07413 hypothetical protein; Validated
Probab=30.06 E-value=45 Score=35.65 Aligned_cols=28 Identities=36% Similarity=0.768 Sum_probs=23.1
Q ss_pred CCcchHHHHHHHHHHHHHCC--C------eeEEeee
Q 012331 12 SGLGKGVTASSIGVLLKACG--L------RVTCIKI 39 (466)
Q Consensus 12 s~~gkgi~~as~g~ll~~~g--~------~v~~~K~ 39 (466)
-|=|||-|+|++|..|++.| + ||.++.|
T Consensus 26 tG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~ivQF 61 (382)
T PRK07413 26 DGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRF 61 (382)
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEEEE
Confidence 45699999999999999966 4 7777665
No 404
>PRK07806 short chain dehydrogenase; Provisional
Probab=29.86 E-value=65 Score=30.51 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=21.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
|-++||||- ++||+.++- .|.++|++|.+
T Consensus 7 k~vlItGas-ggiG~~l~~-----~l~~~G~~V~~ 35 (248)
T PRK07806 7 KTALVTGSS-RGIGADTAK-----ILAGAGAHVVV 35 (248)
T ss_pred cEEEEECCC-CcHHHHHHH-----HHHHCCCEEEE
Confidence 779999984 788877654 34567888765
No 405
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=29.84 E-value=60 Score=33.39 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=47.0
Q ss_pred CeeecCCCCccchhhHHHHHcchhhhhHhhcCCCCCCChhhHHHHHHHHhhh----c-CCCCCeEEEEEeccCCchh-hH
Q 012331 240 NIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEIC----D-GLHEPVRIAMVGKYTGLSD-AY 313 (466)
Q Consensus 240 ~Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~l~~~~~~~~l~~W~~lv~~v----~-~~~~~v~IaIVgkY~g~~D-ay 313 (466)
-|+-+--.++-|.+|.+=...|.++.+.+.+--.+ .....+..|.+++... . ..+..++||| ||-.|-+- .|
T Consensus 181 ~VfDvRfLpNP~y~~~Lr~lTG~D~~V~~yv~~~~-~~~~f~~~~~~~l~~~lp~y~~egk~~ltIai-GCTGG~HRSV~ 258 (284)
T PF03668_consen 181 LVFDVRFLPNPYYVPELRPLTGLDKPVQDYVLSDP-EAQEFLEKIEDLLDFLLPRYEKEGKSYLTIAI-GCTGGQHRSVA 258 (284)
T ss_pred EEEEcCcCCCCCCChhhhhcCCCChHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE-EcCCCcCcHHH
Confidence 34444445677777776667788888777654332 2223344554444332 2 2234577877 54444332 22
Q ss_pred H--HHHHHHHHcCCceeE
Q 012331 314 L--SILKALLHASVDLRK 329 (466)
Q Consensus 314 ~--SI~~aL~~aG~~~~v 329 (466)
. .+.+.|+..+..+.+
T Consensus 259 iae~La~~L~~~~~~v~v 276 (284)
T PF03668_consen 259 IAERLAERLREKGYTVVV 276 (284)
T ss_pred HHHHHHHHHHhcCCcceE
Confidence 1 245667777766553
No 406
>PRK07985 oxidoreductase; Provisional
Probab=29.82 E-value=62 Score=32.26 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||- +|||+. +.+.|.++|++|.+.
T Consensus 50 k~vlITGas-~gIG~a-----ia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 50 RKALVTGGD-SGIGRA-----AAIAYAREGADVAIS 79 (294)
T ss_pred CEEEEECCC-CcHHHH-----HHHHHHHCCCEEEEe
Confidence 679999984 788864 556677789988653
No 407
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=29.70 E-value=2.4e+02 Score=26.64 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=24.9
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEehHH
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGICLG 400 (466)
.++|||++.....+ .....++.+.+.++|+.-+=..
T Consensus 54 ~~~d~Iiv~~~~~~----~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPD----SLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TTESEEEEESSSTT----TTHHHHHHHHHTTSEEEEESST
T ss_pred hcCCEEEecCCCHH----HHHHHHHHHhhcCceEEEEecc
Confidence 47999998874332 2336677888889999886333
No 408
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=29.66 E-value=3.4e+02 Score=29.35 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=20.2
Q ss_pred eEEEEEeccCCc-----hhhHHHHHHHHHHcCCceeE
Q 012331 298 VRIAMVGKYTGL-----SDAYLSILKALLHASVDLRK 329 (466)
Q Consensus 298 v~IaIVgkY~g~-----~Day~SI~~aL~~aG~~~~v 329 (466)
+||+|+|.| ++ .-...+++++|+...-++.+
T Consensus 1 ~~i~i~G~~-g~~N~GdeAil~~ii~~l~~~~p~~~i 36 (426)
T PRK10017 1 MKLLILGNH-TCGNRGDSAILRGLLDAINILNPHAEV 36 (426)
T ss_pred CeEEEEccc-cCCCccHHHHHHHHHHHHHhhCCCCeE
Confidence 478888855 32 22446888888887655443
No 409
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=29.62 E-value=2.2e+02 Score=26.36 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=17.4
Q ss_pred CCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEe
Q 012331 362 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (466)
Q Consensus 362 ~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGI 397 (466)
++|||++.+.... ... ++.+.+.++|+..+
T Consensus 55 ~~d~iii~~~~~~-----~~~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 55 RVDGIILAPSRLD-----DEL-LEELAALGIPVVLV 84 (264)
T ss_pred CcCEEEEecCCcc-----hHH-HHHHHHcCCCEEEe
Confidence 5788887664321 111 55566667776554
No 410
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=29.39 E-value=66 Score=34.09 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=27.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.|=|||= =|||-|++=|..+|++.|+||-..
T Consensus 50 ~~I~VtGT----NGKgSt~~~l~~iL~~~G~~vG~~ 81 (416)
T PRK10846 50 FVFTVAGT----NGKGTTCRTLESILMAAGYRVGVY 81 (416)
T ss_pred CEEEEECC----CChHHHHHHHHHHHHHcCCCceEE
Confidence 45667774 499999999999999999999765
No 411
>PRK09186 flagellin modification protein A; Provisional
Probab=29.22 E-value=66 Score=30.53 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|.++||||- ++||+. +.+.|.++|++|.+.-
T Consensus 5 k~vlItGas-~giG~~-----~a~~l~~~g~~v~~~~ 35 (256)
T PRK09186 5 KTILITGAG-GLIGSA-----LVKAILEAGGIVIAAD 35 (256)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEEe
Confidence 789999984 677765 4566778899987763
No 412
>PRK12937 short chain dehydrogenase; Provisional
Probab=29.19 E-value=62 Score=30.45 Aligned_cols=29 Identities=38% Similarity=0.552 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
|.++||||- ++||+. +.+.|.++|++|.+
T Consensus 6 ~~vlItG~~-~~iG~~-----la~~l~~~g~~v~~ 34 (245)
T PRK12937 6 KVAIVTGAS-RGIGAA-----IARRLAADGFAVAV 34 (245)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCEEEE
Confidence 789999994 777765 45777888887754
No 413
>PRK09242 tropinone reductase; Provisional
Probab=29.15 E-value=61 Score=30.99 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++|||| -++||+. +.+.|.++|++|.++
T Consensus 10 k~~lItGa-~~gIG~~-----~a~~l~~~G~~v~~~ 39 (257)
T PRK09242 10 QTALITGA-SKGIGLA-----IAREFLGLGADVLIV 39 (257)
T ss_pred CEEEEeCC-CchHHHH-----HHHHHHHcCCEEEEE
Confidence 78999988 5777754 455567788877665
No 414
>PRK08309 short chain dehydrogenase; Provisional
Probab=29.07 E-value=91 Score=29.32 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
++|||| ||+| .+ +.+.|.++|++|.+.
T Consensus 3 vlVtGG--tG~g----g~-la~~L~~~G~~V~v~ 29 (177)
T PRK08309 3 ALVIGG--TGML----KR-VSLWLCEKGFHVSVI 29 (177)
T ss_pred EEEECc--CHHH----HH-HHHHHHHCcCEEEEE
Confidence 789999 4554 23 677778899999864
No 415
>PRK07814 short chain dehydrogenase; Provisional
Probab=29.03 E-value=63 Score=31.20 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
|.++|||| -++||+ ++.+.|.++|++|.+.-.+|
T Consensus 11 ~~vlItGa-sggIG~-----~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 11 QVAVVTGA-GRGLGA-----AIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CEEEEECC-CChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 67899998 456665 45577778999987765444
No 416
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.99 E-value=64 Score=31.36 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=22.1
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv~-s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
|.++||||-= +|||+.+ .+.|..+|++|.+
T Consensus 9 k~~lITGas~~~GIG~a~-----a~~la~~G~~v~~ 39 (260)
T PRK06603 9 KKGLITGIANNMSISWAI-----AQLAKKHGAELWF 39 (260)
T ss_pred cEEEEECCCCCcchHHHH-----HHHHHHcCCEEEE
Confidence 7899999964 4777754 4667778988754
No 417
>PRK06182 short chain dehydrogenase; Validated
Probab=28.95 E-value=67 Score=31.18 Aligned_cols=31 Identities=42% Similarity=0.483 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|.|+|||| -|++|+.++ +.|.++|++|...-
T Consensus 4 k~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~ 34 (273)
T PRK06182 4 KVALVTGA-SSGIGKATA-----RRLAAQGYTVYGAA 34 (273)
T ss_pred CEEEEECC-CChHHHHHH-----HHHHHCCCEEEEEe
Confidence 78999997 478887644 56667899988653
No 418
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=28.76 E-value=55 Score=27.47 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecC
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG 370 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPG 370 (466)
...+|.++|+..|+++.- -+ . +..+..+|++++.|
T Consensus 9 ~Ls~v~~~L~~~GyeVv~--------l~---~-------------~~~~~~~daiVvtG 43 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVD--------LE---N-------------EQDLQNVDAIVVTG 43 (80)
T ss_pred CchHHHHHHHHCCCEEEe--------cC---C-------------ccccCCcCEEEEEC
Confidence 445789999999999852 11 1 03578899999999
No 419
>TIGR01419 nitro_reg_IIA PTS IIA-like nitrogen-regulatory protein PtsN. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum.
Probab=28.57 E-value=22 Score=31.56 Aligned_cols=44 Identities=14% Similarity=0.403 Sum_probs=29.9
Q ss_pred ccCCCCCCCCcccchHhhHHHHhhhhcCCC-CCCeeEEcccchHHH
Q 012331 77 FMDIKLTRDNNITTGKIYQSVIDKERKGDY-LGKTVQVVPHITDEI 121 (466)
Q Consensus 77 f~~~~l~~~~n~t~gkiy~~vi~ker~g~y-lg~tvqviPHit~ei 121 (466)
++...|.+....+.-.+++.+++||+.|-+ +|..| .+||...+-
T Consensus 26 ~~~~~l~~~~~~~~~~~~~~i~~RE~~~~t~i~~~i-AiPH~~~~~ 70 (145)
T TIGR01419 26 IISLLAARELSLPEQDVFECLLAREKLGSTGVGNGI-AIPHGRLSG 70 (145)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHhcccCCCCCCce-eccccCccc
Confidence 333334333222344689999999999985 57778 999987663
No 420
>PRK06720 hypothetical protein; Provisional
Probab=28.56 E-value=67 Score=29.87 Aligned_cols=30 Identities=37% Similarity=0.618 Sum_probs=21.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++|||| -+|+|..++ ..|.++|++|.+.
T Consensus 17 k~~lVTGa-~~GIG~aia-----~~l~~~G~~V~l~ 46 (169)
T PRK06720 17 KVAIVTGG-GIGIGRNTA-----LLLAKQGAKVIVT 46 (169)
T ss_pred CEEEEecC-CChHHHHHH-----HHHHHCCCEEEEE
Confidence 67999998 467887765 3455678876644
No 421
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=28.25 E-value=1.2e+02 Score=27.30 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=29.2
Q ss_pred CCCcEEEEeeCccccccCc-----chHHHHHHHhhhhcCCCCEEEEEeeeeee
Q 012331 138 GPVDVCVIELGGTIGDIES-----MPFIEALGQFSYRVGPGNFCLIHVSLVPV 185 (466)
Q Consensus 138 ~~~d~~i~EigGtvGdiEs-----~pf~ea~rq~~~~~g~~n~~~ih~t~vp~ 185 (466)
.+||+|||++|+ .|+.. .-|.+.+++|-.++...++-.|-++.-|.
T Consensus 66 ~~~d~vii~~G~--ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~ 116 (185)
T cd01832 66 LRPDLVTLLAGG--NDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDP 116 (185)
T ss_pred cCCCEEEEeccc--cccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 489999999995 45532 22677777777766544544444554443
No 422
>PRK06761 hypothetical protein; Provisional
Probab=28.23 E-value=66 Score=32.90 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=29.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
++|+|+|- +|-||-..+..+...|..+|++|..
T Consensus 4 ~lIvI~G~--~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGL--PGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHhcCcCceEEEE
Confidence 68999995 8999999999999999999998876
No 423
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=28.22 E-value=49 Score=33.89 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.4
Q ss_pred ccccCcchHHHHHHHhhhhcCCC
Q 012331 151 IGDIESMPFIEALGQFSYRVGPG 173 (466)
Q Consensus 151 vGdiEs~pf~ea~rq~~~~~g~~ 173 (466)
|=||-|.-|+..+.|...++...
T Consensus 57 ~iDiRs~~~~~~l~~~l~~l~~~ 79 (286)
T COG1660 57 VIDVRSREFFGDLEEVLDELKDN 79 (286)
T ss_pred EEecccchhHHHHHHHHHHHHhc
Confidence 35899999999888888877655
No 424
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=28.18 E-value=1.8e+02 Score=31.12 Aligned_cols=81 Identities=21% Similarity=0.171 Sum_probs=45.1
Q ss_pred eEEEEEeccCCchhhHHH-HHHHHHHcCCceeEEeEEEEeeCCC------cccccccCCchhhHHHHHHccCCCEEEecC
Q 012331 298 VRIAMVGKYTGLSDAYLS-ILKALLHASVDLRKKLVIDWIPACD------LEDATEKENPDAYKAAWKLLKGADGILVPG 370 (466)
Q Consensus 298 v~IaIVgkY~g~~Day~S-I~~aL~~aG~~~~v~v~i~~i~s~~------l~~~~~~~~p~~y~~~~~~L~~~DGIllPG 370 (466)
.+|.++| ..+ +=.| +.+.|...|+.+.+. +... ++.....-.. .+ ..+.+.++|-||+|+
T Consensus 8 ~~v~viG-~G~---sG~s~~a~~L~~~G~~V~~~------D~~~~~~~~~l~~~gi~~~~-~~--~~~~~~~~d~vv~sp 74 (461)
T PRK00421 8 KRIHFVG-IGG---IGMSGLAEVLLNLGYKVSGS------DLKESAVTQRLLELGAIIFI-GH--DAENIKDADVVVYSS 74 (461)
T ss_pred CEEEEEE-Ech---hhHHHHHHHHHhCCCeEEEE------CCCCChHHHHHHHCCCEEeC-CC--CHHHCCCCCEEEECC
Confidence 3688888 523 3367 789999999988762 3211 1000000000 00 013456789999998
Q ss_pred CCCCCCchhHHHHHHHHHHcCCcEEE
Q 012331 371 GFGNRGVQGKILAAKYAREHRIPYLG 396 (466)
Q Consensus 371 GfG~rg~eG~i~aIk~are~~iPvLG 396 (466)
|.... ...++.|++.++|+++
T Consensus 75 gi~~~-----~~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 75 AIPDD-----NPELVAARELGIPVVR 95 (461)
T ss_pred CCCCC-----CHHHHHHHHCCCcEEe
Confidence 75431 1245666677778766
No 425
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=28.10 E-value=3.5e+02 Score=25.27 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=19.9
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEe
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGI 397 (466)
.++|||++.++... . .+.++.+.++++|++-+
T Consensus 54 ~~vdgiii~~~~~~-~----~~~~~~~~~~~ipvV~~ 85 (266)
T cd06282 54 QRVDGLILTVADAA-T----SPALDLLDAERVPYVLA 85 (266)
T ss_pred cCCCEEEEecCCCC-c----hHHHHHHhhCCCCEEEE
Confidence 36899998654321 1 12456677778887655
No 426
>PRK05599 hypothetical protein; Provisional
Probab=28.04 E-value=54 Score=31.53 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=20.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++|||| -+|||+.++.+ |. +|.+|.+.
T Consensus 1 ~~vlItGa-s~GIG~aia~~-----l~-~g~~Vil~ 29 (246)
T PRK05599 1 MSILILGG-TSDIAGEIATL-----LC-HGEDVVLA 29 (246)
T ss_pred CeEEEEeC-ccHHHHHHHHH-----Hh-CCCEEEEE
Confidence 46899999 58999988664 33 38877553
No 427
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.92 E-value=1.6e+02 Score=30.34 Aligned_cols=82 Identities=23% Similarity=0.149 Sum_probs=46.5
Q ss_pred EEEEEeccCCchh---hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCC
Q 012331 299 RIAMVGKYTGLSD---AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (466)
Q Consensus 299 ~IaIVgkY~g~~D---ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~r 375 (466)
+|+++-+- +..+ ....+.+.|+..|+++.+.. ...+.. +..+ ........+|.+++-||=|.
T Consensus 5 kv~lI~n~-~~~~~~~~~~~i~~~L~~~g~~v~v~~----~~~~~~--------~~~~-~~~~~~~~~d~vi~~GGDGT- 69 (305)
T PRK02645 5 QVIIAYKA-GSSQAKEAAERCAKQLEARGCKVLMGP----SGPKDN--------PYPV-FLASASELIDLAIVLGGDGT- 69 (305)
T ss_pred EEEEEEeC-CCHHHHHHHHHHHHHHHHCCCEEEEec----Cchhhc--------cccc-hhhccccCcCEEEEECCcHH-
Confidence 57777543 3222 23346677888888866420 011100 0000 00011235899999998552
Q ss_pred CchhHHHHHHHHHHcCCcEEEehH
Q 012331 376 GVQGKILAAKYAREHRIPYLGICL 399 (466)
Q Consensus 376 g~eG~i~aIk~are~~iPvLGICL 399 (466)
...+++.+...++|++||=.
T Consensus 70 ----~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 70 ----VLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred ----HHHHHHHhccCCCCEEEEec
Confidence 55667766677999999987
No 428
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=27.75 E-value=67 Score=30.89 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=22.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|-++|||| -||||.. +.+.|-++|++|.+.-
T Consensus 7 k~vlVtGa-s~gIG~~-----ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 7 QVALITGG-GSGIGRA-----LVERFLAEGARVAVLE 37 (263)
T ss_pred CEEEEeCC-CchHHHH-----HHHHHHHCCCEEEEEe
Confidence 67999998 4677654 5566677899987754
No 429
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=27.73 E-value=2.6e+02 Score=24.82 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcc----hHHHHHHHhhhhc
Q 012331 119 DEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM----PFIEALGQFSYRV 170 (466)
Q Consensus 119 ~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~----pf~ea~rq~~~~~ 170 (466)
....+++.+... ..+||+++|++|+ .|+-.. -|.+.++++-..+
T Consensus 50 ~~~~~~l~~~~~------~~~pd~v~i~~G~--ND~~~~~~~~~~~~~l~~li~~~ 97 (177)
T cd01822 50 AGGLARLPALLA------QHKPDLVILELGG--NDGLRGIPPDQTRANLRQMIETA 97 (177)
T ss_pred HHHHHHHHHHHH------hcCCCEEEEeccC--cccccCCCHHHHHHHHHHHHHHH
Confidence 345566654432 3579999999994 464321 2444455544433
No 430
>PRK08643 acetoin reductase; Validated
Probab=27.68 E-value=76 Score=30.24 Aligned_cols=30 Identities=37% Similarity=0.522 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-++||||. |+||. ++.+.|-++|++|.++
T Consensus 3 k~~lItGas-~giG~-----~la~~l~~~G~~v~~~ 32 (256)
T PRK08643 3 KVALVTGAG-QGIGF-----AIAKRLVEDGFKVAIV 32 (256)
T ss_pred CEEEEECCC-ChHHH-----HHHHHHHHCCCEEEEE
Confidence 678999876 77775 5566677889988765
No 431
>PRK12743 oxidoreductase; Provisional
Probab=27.67 E-value=72 Score=30.61 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=21.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
+|-++|||| -|+||.- +.+.|-++|++|.+
T Consensus 2 ~k~vlItGa-s~giG~~-----~a~~l~~~G~~V~~ 31 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKA-----CALLLAQQGFDIGI 31 (256)
T ss_pred CCEEEEECC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 367999998 4888854 55666667887654
No 432
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=27.66 E-value=67 Score=30.85 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++|||| -+|||+ ++.+.|-++|++|...
T Consensus 11 k~~lItG~-~~gIG~-----a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 11 KVAVVTGC-DTGLGQ-----GMALGLAEAGCDIVGI 40 (253)
T ss_pred CEEEEECC-CchHHH-----HHHHHHHHCCCEEEEe
Confidence 78999998 466665 5566777889988653
No 433
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=27.66 E-value=37 Score=18.79 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=6.8
Q ss_pred EEccCCccc
Q 012331 59 FVLDDGGEV 67 (466)
Q Consensus 59 fv~~dg~e~ 67 (466)
|.+.|||+|
T Consensus 1 ~~S~D~G~T 9 (12)
T PF02012_consen 1 YYSTDGGKT 9 (12)
T ss_dssp EEESSTTSS
T ss_pred CEeCCCccc
Confidence 667888876
No 434
>PLN00198 anthocyanidin reductase; Provisional
Probab=27.60 E-value=98 Score=31.17 Aligned_cols=34 Identities=38% Similarity=0.396 Sum_probs=26.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
|.|+||||- |-+.+.|...|..+|++|..+-.|+
T Consensus 10 ~~vlItG~~------GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 10 KTACVIGGT------GFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CeEEEECCc------hHHHHHHHHHHHHCCCEEEEEECCC
Confidence 679999985 5666777777888999998765654
No 435
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=27.56 E-value=77 Score=33.85 Aligned_cols=37 Identities=32% Similarity=0.393 Sum_probs=30.0
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 2 k~i~vtgg----------v~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|-++|||| .+|--.-|-+...|.+-|..+|.+|+.+-
T Consensus 186 ~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~ 232 (390)
T TIGR00521 186 KRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLIT 232 (390)
T ss_pred ceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 67899999 45655667778889999999999998763
No 436
>PRK08267 short chain dehydrogenase; Provisional
Probab=27.50 E-value=90 Score=29.88 Aligned_cols=31 Identities=39% Similarity=0.698 Sum_probs=23.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
||-++||||. ++||+-+ .+.|-++|++|.++
T Consensus 1 mk~vlItGas-g~iG~~l-----a~~l~~~G~~V~~~ 31 (260)
T PRK08267 1 MKSIFITGAA-SGIGRAT-----ALLFAAEGWRVGAY 31 (260)
T ss_pred CcEEEEeCCC-chHHHHH-----HHHHHHCCCeEEEE
Confidence 7889999987 6777654 45566789998876
No 437
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.45 E-value=74 Score=30.38 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|.++|||| -++||+.+ ...|.++|.+|.+.=
T Consensus 2 k~~lItG~-s~giG~~i-----a~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITGG-SSGMGKAM-----AKRFAEEGANVVITG 32 (252)
T ss_pred CEEEEeCC-CChHHHHH-----HHHHHHCCCEEEEEe
Confidence 67899999 67777654 556667899887653
No 438
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=27.25 E-value=90 Score=32.80 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=33.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~-~~g~~v~~~K~DpYln 44 (466)
+++|| ++|-||=..+..+...|. .+|++|.++-+|=++.
T Consensus 2 ~~l~G--l~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCG--LPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEEC--CCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 46666 689999999999998886 7999999999998884
No 439
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=27.22 E-value=87 Score=30.66 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=30.2
Q ss_pred EEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 4 VLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 4 i~vtgg----------v~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|+||+| .+|.-.-|-+.++|...|-++|++|+.+-
T Consensus 3 vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 3 ILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred EEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEE
Confidence 678888 67888889999999999999999999873
No 440
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=27.16 E-value=72 Score=32.44 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=24.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
+|+++|||. -||||+- +.+.|..+|++|..+=
T Consensus 6 ~~~~lITGA-SsGIG~~-----~A~~lA~~g~~liLva 37 (265)
T COG0300 6 GKTALITGA-SSGIGAE-----LAKQLARRGYNLILVA 37 (265)
T ss_pred CcEEEEECC-CchHHHH-----HHHHHHHCCCEEEEEe
Confidence 378899975 4788864 5688999999988763
No 441
>PLN02780 ketoreductase/ oxidoreductase
Probab=27.00 E-value=60 Score=33.07 Aligned_cols=32 Identities=34% Similarity=0.587 Sum_probs=24.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
|.++|||| -||||+.+ .+.|..+|++|.+.=.
T Consensus 54 ~~~lITGA-s~GIG~al-----A~~La~~G~~Vil~~R 85 (320)
T PLN02780 54 SWALVTGP-TDGIGKGF-----AFQLARKGLNLVLVAR 85 (320)
T ss_pred CEEEEeCC-CcHHHHHH-----HHHHHHCCCCEEEEEC
Confidence 68999998 58888764 4567778999887643
No 442
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=26.97 E-value=97 Score=27.32 Aligned_cols=72 Identities=25% Similarity=0.260 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhH-HHHHHccCCCEEEecCCCCCCCchhHHHHHHHHHHc
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYK-AAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREH 390 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~-~~~~~L~~~DGIllPGGfG~rg~eG~i~aIk~are~ 390 (466)
+-..+.+.|+..|+++... .+ + +++.+ .-. ...+.+.++|-|+..||-|--...-..++++.+.+.
T Consensus 19 ~~~~l~~~l~~~G~~~~~~-~~--v-~Dd~~---------~I~~~l~~~~~~~dliittGG~g~g~~D~t~~~l~~~~~~ 85 (135)
T smart00852 19 NGPALAELLTELGIEVTRY-VI--V-PDDKE---------AIKEALREALERADLVITTGGTGPGPDDVTPEAVAEALGK 85 (135)
T ss_pred cHHHHHHHHHHCCCeEEEE-EE--e-CCCHH---------HHHHHHHHHHhCCCEEEEcCCCCCCCCcCcHHHHHHHhCC
Confidence 3456788899999876432 11 1 22211 001 111234579999999976532222234455555443
Q ss_pred CCcEEE
Q 012331 391 RIPYLG 396 (466)
Q Consensus 391 ~iPvLG 396 (466)
.+|+.|
T Consensus 86 ~~~~~~ 91 (135)
T smart00852 86 ELPGFG 91 (135)
T ss_pred cCCChh
Confidence 455443
No 443
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.92 E-value=2.6e+02 Score=30.24 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCCCeEEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccC----------CchhhHHHHHHccC
Q 012331 293 GLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKE----------NPDAYKAAWKLLKG 362 (466)
Q Consensus 293 ~~~~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~----------~p~~y~~~~~~L~~ 362 (466)
+....-+|+|+| +.. +=.+..+.|.. |+++.+ .+........... .+ +.+.+
T Consensus 2 ~~~~~~~v~v~G-~G~---sG~a~~~~L~~-g~~v~v------~D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 63 (454)
T PRK01368 2 NSHTKQKIGVFG-LGK---TGISVYEELQN-KYDVIV------YDDLKANRDIFEELYSKNAIAALSD-------SRWQN 63 (454)
T ss_pred cCCCCCEEEEEe-ecH---HHHHHHHHHhC-CCEEEE------ECCCCCchHHHHhhhcCceeccCCh-------hHhhC
Q ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEE
Q 012331 363 ADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (466)
Q Consensus 363 ~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLG 396 (466)
+|-||+++|..... ..+++|+++++|+++
T Consensus 64 ~d~vV~SPgI~~~~-----p~~~~a~~~gi~v~~ 92 (454)
T PRK01368 64 LDKIVLSPGIPLTH-----EIVKIAKNFNIPITS 92 (454)
T ss_pred CCEEEECCCCCCCC-----HHHHHHHHCCCceec
No 444
>PRK08278 short chain dehydrogenase; Provisional
Probab=26.89 E-value=68 Score=31.36 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++|||| -+|||+. +.+.|.++|++|.+.
T Consensus 7 k~vlItGa-s~gIG~~-----ia~~l~~~G~~V~~~ 36 (273)
T PRK08278 7 KTLFITGA-SRGIGLA-----IALRAARDGANIVIA 36 (273)
T ss_pred CEEEEECC-CchHHHH-----HHHHHHHCCCEEEEE
Confidence 67999999 4677665 455677789888765
No 445
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=26.85 E-value=1.1e+02 Score=25.58 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=22.8
Q ss_pred hHHHHHHcc--CCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEE
Q 012331 353 YKAAWKLLK--GADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (466)
Q Consensus 353 y~~~~~~L~--~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvL 395 (466)
|++..+.+. ++|.+++...+. --.+.++.+.+.++|+|
T Consensus 51 ~~~~~~ll~~~~~D~V~I~tp~~-----~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 51 YTDLEELLADEDVDAVIIATPPS-----SHAEIAKKALEAGKHVL 90 (120)
T ss_dssp ESSHHHHHHHTTESEEEEESSGG-----GHHHHHHHHHHTTSEEE
T ss_pred hhHHHHHHHhhcCCEEEEecCCc-----chHHHHHHHHHcCCEEE
Confidence 344445554 689999988542 23445566666666654
No 446
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=26.81 E-value=1.4e+02 Score=32.06 Aligned_cols=37 Identities=19% Similarity=0.471 Sum_probs=27.6
Q ss_pred CCcEEEEe-eCccccccC-cchHHHHHHHhhhhcCCCCEEEE
Q 012331 139 PVDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLI 178 (466)
Q Consensus 139 ~~d~~i~E-igGtvGdiE-s~pf~ea~rq~~~~~g~~n~~~i 178 (466)
+.-.+|+| |-|.-|++. +--|++++|++..+.| +++|
T Consensus 218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g---~llI 256 (445)
T PRK09221 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHG---ILLI 256 (445)
T ss_pred cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcC---CEEE
Confidence 44578999 667777764 4559999999999875 5554
No 447
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=26.78 E-value=97 Score=31.63 Aligned_cols=93 Identities=27% Similarity=0.306 Sum_probs=61.9
Q ss_pred CccccCCCCccccccCCCCCCCCcccchHh--hHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCC----CCC
Q 012331 64 GGEVDLDLGNYERFMDIKLTRDNNITTGKI--YQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVD----GKE 137 (466)
Q Consensus 64 g~e~dlDlg~yerf~~~~l~~~~n~t~gki--y~~vi~ker~g~ylg~tvqviPHit~ei~~~i~~~~~~pvd----~~~ 137 (466)
|.+++| |.--|.|=|.-+++|..+++|+. -.+.=+.+|+|+ +.++++|.++..--++. +..
T Consensus 51 gv~V~l-l~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE------------~~~~~~~~~~lgi~i~~~~~~~~~ 117 (267)
T COG1834 51 GVEVHL-LPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGE------------EEAIKETLESLGIPIYPRVEAGVF 117 (267)
T ss_pred CCEEEE-cCcccCCCcceEeccceeEecccEEEeccCChhhccC------------HHHHHHHHHHcCCcccccccCCCc
Confidence 444444 44567888888899999888864 355567899997 67899999998742122 222
Q ss_pred CC-CcEEEEeeCccc--cccCcchHHHHHHHhhhhcC
Q 012331 138 GP-VDVCVIELGGTI--GDIESMPFIEALGQFSYRVG 171 (466)
Q Consensus 138 ~~-~d~~i~EigGtv--GdiEs~pf~ea~rq~~~~~g 171 (466)
.+ =|+++.+ |.|| |.= .--=+|+++||+.-++
T Consensus 118 eG~GD~l~~~-~~~v~iG~s-~RTn~egi~~l~~~L~ 152 (267)
T COG1834 118 EGAGDVLMDG-GDTVYIGYS-FRTNLEGIEQLQAWLE 152 (267)
T ss_pred cccccEEEeC-CcEEEEEec-cccchHHHHHHHHHhc
Confidence 33 5888887 6665 221 1223588888888776
No 448
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.70 E-value=2.4e+02 Score=30.55 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=44.6
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCCCcccc----cccCCc---hhhHHHHHHccCCCEEEecCC
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDA----TEKENP---DAYKAAWKLLKGADGILVPGG 371 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~----~~~~~p---~~y~~~~~~L~~~DGIllPGG 371 (466)
+|+|+| + | -+=.+..+.|...|+.+.+ .+....... .+.... ...+. .+.+.++|-||+|+|
T Consensus 10 ~v~v~G-~-G--~sG~~~~~~l~~~g~~v~~------~d~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~d~vV~Spg 78 (468)
T PRK04690 10 RVALWG-W-G--REGRAAYRALRAHLPAQAL------TLFCNAVEAREVGALADAALLVETEAS-AQRLAAFDVVVKSPG 78 (468)
T ss_pred EEEEEc-c-c--hhhHHHHHHHHHcCCEEEE------EcCCCcccchHHHHHhhcCEEEeCCCC-hHHccCCCEEEECCC
Confidence 689988 5 3 1347889999999998876 232111000 000000 00001 123557888999887
Q ss_pred CCCCCchhHHHHHHHHHHcCCcEEE
Q 012331 372 FGNRGVQGKILAAKYAREHRIPYLG 396 (466)
Q Consensus 372 fG~rg~eG~i~aIk~are~~iPvLG 396 (466)
.... ...++.|++.++|+.+
T Consensus 79 I~~~-----~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 79 ISPY-----RPEALAAAARGTPFIG 98 (468)
T ss_pred CCCC-----CHHHHHHHHcCCcEEE
Confidence 5432 1245566666777766
No 449
>PRK06125 short chain dehydrogenase; Provisional
Probab=26.51 E-value=76 Score=30.44 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
|.++|||| -+|||+.++. .|.++|++|.+.=.
T Consensus 8 k~vlItG~-~~giG~~ia~-----~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGA-SKGIGAAAAE-----AFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCC-CchHHHHHHH-----HHHHcCCEEEEEeC
Confidence 78999998 5888876654 45567988877533
No 450
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.50 E-value=79 Score=30.76 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=22.8
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv-~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
|-++||||- -+|||+.+ .+.|-+.|++|.+
T Consensus 7 k~vlItGas~~~GIG~a~-----a~~l~~~G~~v~~ 37 (260)
T PRK06997 7 KRILITGLLSNRSIAYGI-----AKACKREGAELAF 37 (260)
T ss_pred cEEEEeCCCCCCcHHHHH-----HHHHHHCCCeEEE
Confidence 679999984 68999854 4556678998854
No 451
>PRK07023 short chain dehydrogenase; Provisional
Probab=26.42 E-value=91 Score=29.52 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=22.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|+-++|||| -++||+- +.+.|.++|++|.++=
T Consensus 1 ~~~vlItGa-sggiG~~-----ia~~l~~~G~~v~~~~ 32 (243)
T PRK07023 1 AVRAIVTGH-SRGLGAA-----LAEQLLQPGIAVLGVA 32 (243)
T ss_pred CceEEEecC-CcchHHH-----HHHHHHhCCCEEEEEe
Confidence 456899998 5677654 4456667899988763
No 452
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=26.34 E-value=93 Score=29.18 Aligned_cols=30 Identities=40% Similarity=0.677 Sum_probs=22.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
||.++||||- ++||.. +.+.|-++|++|.+
T Consensus 1 ~~~~lItGa~-g~iG~~-----l~~~l~~~g~~v~~ 30 (247)
T PRK09730 1 MAIALVTGGS-RGIGRA-----TALLLAQEGYTVAV 30 (247)
T ss_pred CCEEEEeCCC-chHHHH-----HHHHHHHCCCEEEE
Confidence 6889999994 666655 45566678998865
No 453
>PRK07478 short chain dehydrogenase; Provisional
Probab=26.31 E-value=76 Score=30.27 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||- +|||+.+ .+.|-++|++|.+.
T Consensus 7 k~~lItGas-~giG~~i-----a~~l~~~G~~v~~~ 36 (254)
T PRK07478 7 KVAIITGAS-SGIGRAA-----AKLFAREGAKVVVG 36 (254)
T ss_pred CEEEEeCCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 689999986 7888765 45566789887654
No 454
>PRK06057 short chain dehydrogenase; Provisional
Probab=26.30 E-value=76 Score=30.36 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=22.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-|+||||- ++||+- +.+.|.++|++|.++
T Consensus 8 ~~vlItGas-ggIG~~-----~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 8 RVAVITGGG-SGIGLA-----TARRLAAEGATVVVG 37 (255)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHcCCEEEEE
Confidence 678999994 666654 446777789998875
No 455
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=26.28 E-value=1.5e+02 Score=28.71 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=35.0
Q ss_pred chHhhHHHHhhhhcCCCCCC--eeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccc
Q 012331 90 TGKIYQSVIDKERKGDYLGK--TVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI 151 (466)
Q Consensus 90 ~gkiy~~vi~ker~g~ylg~--tvqviPHit~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtv 151 (466)
+|..-.+.+++ .| +.|- ...+||.=-++|++.|++... ..++|++|+= |||-
T Consensus 24 ng~~L~~~L~~--~G-~~g~~v~~~iVpDd~~~I~~aL~~a~~------~~~~DlIITT-GGtg 77 (193)
T PRK09417 24 GIPALEEWLAS--AL-TSPFEIETRLIPDEQDLIEQTLIELVD------EMGCDLVLTT-GGTG 77 (193)
T ss_pred hHHHHHHHHHH--cC-CCCceEEEEECCCCHHHHHHHHHHHhh------cCCCCEEEEC-CCCC
Confidence 45555555543 33 2232 227899999999999998862 3468988886 8874
No 456
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=26.20 E-value=2.7e+02 Score=28.21 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchhHHHHHHHHHH
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 389 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG~i~aIk~are 389 (466)
+..-+.++++.+|.++ +.|.+++++..+-. ....|+.+..-+--++||=.|-+..+.++...+-+||
T Consensus 21 s~~~~~~ai~aSg~~i-vTva~rR~~~~~~~----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare 87 (248)
T cd04728 21 SPAIMKEAIEASGAEI-VTVALRRVNIGDPG----------GESFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLARE 87 (248)
T ss_pred CHHHHHHHHHHhCCCE-EEEEEEecccCCCC----------cchHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHH
Confidence 4556788999999987 35677777642211 1224556654556788996555444333333333333
No 457
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=26.14 E-value=72 Score=32.01 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=21.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-++||||- +|||.-+ .+.|..+|++|.+.
T Consensus 7 k~vlVTGas-~gIG~~~-----a~~L~~~G~~V~~~ 36 (322)
T PRK07453 7 GTVIITGAS-SGVGLYA-----AKALAKRGWHVIMA 36 (322)
T ss_pred CEEEEEcCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 679999985 7777654 45566678887654
No 458
>PRK00208 thiG thiazole synthase; Reviewed
Probab=26.07 E-value=2.8e+02 Score=28.15 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccCCCEEEecCCCCCCCchhHHHHHHHHHH
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 389 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~~DGIllPGGfG~rg~eG~i~aIk~are 389 (466)
+..-+.++|+.+|+++. .|.+++++...- ....|+.+..-.--++||=.|-+..+.++..++-+||
T Consensus 22 s~~~~~~ai~asg~~iv-TvalrR~~~~~~-----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare 87 (250)
T PRK00208 22 SPQVMQEAIEASGAEIV-TVALRRVNLGQG-----------GDNLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLARE 87 (250)
T ss_pred CHHHHHHHHHHhCCCeE-EEEEEeecCCCC-----------cchHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHH
Confidence 45567899999999873 567777765321 1134566655556788996665544444444444444
No 459
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.94 E-value=2.9e+02 Score=30.02 Aligned_cols=76 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred EEEEEeccCCchhhHHHHHHHHHHcCCceeEEeEEEEeeCC----------CcccccccCCchhhHHHHHHccCCCEEEe
Q 012331 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPAC----------DLEDATEKENPDAYKAAWKLLKGADGILV 368 (466)
Q Consensus 299 ~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v~v~i~~i~s~----------~l~~~~~~~~p~~y~~~~~~L~~~DGIll 368 (466)
+|+|+| +.. +=.+..+.|...|+.+.+ .+.. .+.-......+ +.+.++|-||.
T Consensus 14 ~v~V~G-~G~---sG~aa~~~L~~~G~~v~~------~D~~~~~~~~l~~~g~~~~~~~~~~-------~~l~~~D~VV~ 76 (488)
T PRK03369 14 PVLVAG-AGV---TGRAVLAALTRFGARPTV------CDDDPDALRPHAERGVATVSTSDAV-------QQIADYALVVT 76 (488)
T ss_pred eEEEEc-CCH---HHHHHHHHHHHCCCEEEE------EcCCHHHHHHHHhCCCEEEcCcchH-------hHhhcCCEEEE
Q ss_pred cCCCCCCCchhHHHHHHHHHHcCCcEEE
Q 012331 369 PGGFGNRGVQGKILAAKYAREHRIPYLG 396 (466)
Q Consensus 369 PGGfG~rg~eG~i~aIk~are~~iPvLG 396 (466)
++|.....-. ++.|+++++|++|
T Consensus 77 SpGi~~~~p~-----~~~a~~~gi~v~~ 99 (488)
T PRK03369 77 SPGFRPTAPV-----LAAAAAAGVPIWG 99 (488)
T ss_pred CCCCCCCCHH-----HHHHHHCCCcEee
No 460
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=25.84 E-value=94 Score=29.39 Aligned_cols=39 Identities=31% Similarity=0.334 Sum_probs=30.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYln 44 (466)
..|.++| .||-||-..+..|..+|+. ..+..+-.|.|+.
T Consensus 7 ~vi~I~G--~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~~ 45 (207)
T TIGR00235 7 IIIGIGG--GSGSGKTTVARKIYEQLGK--LEIVIISQDNYYK 45 (207)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHhcc--cCCeEeccccccc
Confidence 4677888 6899999999999998875 4567777777753
No 461
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.75 E-value=99 Score=28.76 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=21.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
+|.|+|||| -+++ .+++...|.++|++|.+
T Consensus 6 ~~~vlItGa-sg~i-----G~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 6 GRVALVTGA-ARGL-----GRAIALRLARAGADVVV 35 (249)
T ss_pred CCEEEEeCC-CchH-----HHHHHHHHHHCCCeEEE
Confidence 468999998 3444 45666777889998755
No 462
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=25.74 E-value=85 Score=30.01 Aligned_cols=30 Identities=40% Similarity=0.689 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||- ++||+- +.+.|.++|++|.+.
T Consensus 9 k~vlVtGas-~gIG~~-----la~~l~~~G~~v~~~ 38 (260)
T PRK12823 9 KVVVVTGAA-QGIGRG-----VALRAAAEGARVVLV 38 (260)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999975 677754 556677889998764
No 463
>PRK06128 oxidoreductase; Provisional
Probab=25.73 E-value=85 Score=31.19 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-++|||| -+|||+. +.+.|-++|++|.+.
T Consensus 56 k~vlITGa-s~gIG~~-----~a~~l~~~G~~V~i~ 85 (300)
T PRK06128 56 RKALITGA-DSGIGRA-----TAIAFAREGADIALN 85 (300)
T ss_pred CEEEEecC-CCcHHHH-----HHHHHHHcCCEEEEE
Confidence 67999998 5788865 446677789988654
No 464
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=25.66 E-value=1.1e+02 Score=34.65 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=33.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
||.|=|+|- |+-||=....-|=..|+.+||||..+|=|.
T Consensus 10 ~~vi~ivG~--s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFCAY--SGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEEcC--CCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 355666774 999999999999999999999999999755
No 465
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.62 E-value=86 Score=30.46 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.7
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~-s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||-- +|||+.++ +.|-.+|.+|.+.
T Consensus 8 k~~lItGa~~s~GIG~aia-----~~la~~G~~v~~~ 39 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIA-----RSLHNAGAKLVFT 39 (257)
T ss_pred CEEEEECCCCCCCHHHHHH-----HHHHHCCCEEEEe
Confidence 6799999985 89997654 5566789888553
No 466
>PRK07062 short chain dehydrogenase; Provisional
Probab=25.61 E-value=82 Score=30.28 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=24.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~D 40 (466)
|.++||||- ||||+- +.+.|.++|++|.+.-.+
T Consensus 9 k~~lItGas-~giG~~-----ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGS-SGIGLA-----TVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCeEEEEeCC
Confidence 679999975 677764 556677889998776444
No 467
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=25.53 E-value=1.4e+02 Score=25.73 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpYl 43 (466)
+.|+|. +|.||-..+..+...+...|.+|..+-.+...
T Consensus 2 ~~i~G~--~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGP--TGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCC--CCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 567887 89999999999999998888888666555443
No 468
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=25.36 E-value=6e+02 Score=25.72 Aligned_cols=82 Identities=18% Similarity=0.097 Sum_probs=43.7
Q ss_pred CCeEEEEEeccCCchhhH-----HHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHc--cCCCEEEe
Q 012331 296 EPVRIAMVGKYTGLSDAY-----LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILV 368 (466)
Q Consensus 296 ~~v~IaIVgkY~g~~Day-----~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L--~~~DGIll 368 (466)
++.+||++-. .+.+.| ..+.++++..|+.+.+ ..++. ++..-....+.+ .++|||++
T Consensus 24 ~~~~Ig~i~~--~~~~~f~~~~~~gi~~~a~~~g~~l~i------~~~~~--------~~~~~~~~i~~l~~~~vDGiIi 87 (330)
T PRK10355 24 KEVKIGMAID--DLRLERWQKDRDIFVKKAESLGAKVFV------QSANG--------NEETQMSQIENMINRGVDVLVI 87 (330)
T ss_pred CCceEEEEec--CCCchHHHHHHHHHHHHHHHcCCEEEE------ECCCC--------CHHHHHHHHHHHHHcCCCEEEE
Confidence 4678998873 232333 3355666666666543 33321 111111122223 37999999
Q ss_pred cCCCCCCCchhHHHHHHHHHHcCCcEEEe
Q 012331 369 PGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (466)
Q Consensus 369 PGGfG~rg~eG~i~aIk~are~~iPvLGI 397 (466)
.+... ......++.+.+.++|+.-+
T Consensus 88 ~~~~~----~~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 88 IPYNG----QVLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred eCCCh----hhHHHHHHHHHHCCCeEEEE
Confidence 75211 11234567777888998766
No 469
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=25.28 E-value=64 Score=31.78 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.6
Q ss_pred cchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 14 LGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 14 ~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
+|=||+-+|++.-|..+|++|+++-=+..
T Consensus 5 IGaGi~G~~~A~~La~~G~~V~l~e~~~~ 33 (358)
T PF01266_consen 5 IGAGIAGLSTAYELARRGHSVTLLERGDI 33 (358)
T ss_dssp ECTSHHHHHHHHHHHHTTSEEEEEESSST
T ss_pred ECcCHHHHHHHHHHHHCCCeEEEEeeccc
Confidence 35589999999999999999999876643
No 470
>COG2403 Predicted GTPase [General function prediction only]
Probab=25.25 E-value=73 Score=34.32 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.5
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 9 gv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
|+=-+.||--+++-++++|++|||||.++..
T Consensus 133 atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 133 ATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred EeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 3556889999999999999999999999976
No 471
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=25.17 E-value=76 Score=31.98 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCC-CeeEE
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACG-LRVTC 36 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g-~~v~~ 36 (466)
|.++||||- ||||+.++ +.|-++| ++|.+
T Consensus 4 k~vlITGas-~GIG~aia-----~~L~~~G~~~V~l 33 (314)
T TIGR01289 4 PTVIITGAS-SGLGLYAA-----KALAATGEWHVIM 33 (314)
T ss_pred CEEEEECCC-ChHHHHHH-----HHHHHcCCCEEEE
Confidence 678999987 78887654 4455678 88754
No 472
>PHA02754 hypothetical protein; Provisional
Probab=25.09 E-value=63 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.004 Sum_probs=21.9
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEeeeeeee
Q 012331 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVL 186 (466)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ih~t~vp~~ 186 (466)
-|-||+||++..+. +.=.|||---+-|.
T Consensus 15 ~Fke~MRelkD~LS-e~GiYi~RIkai~~ 42 (67)
T PHA02754 15 DFKEAMRELKDILS-EAGIYIDRIKAITT 42 (67)
T ss_pred HHHHHHHHHHHHHh-hCceEEEEEEEEEe
Confidence 58999999999886 66788887555554
No 473
>PRK07413 hypothetical protein; Validated
Probab=25.07 E-value=53 Score=35.12 Aligned_cols=28 Identities=39% Similarity=0.611 Sum_probs=23.0
Q ss_pred CCcchHHHHHHHHHHHHHCCC--------eeEEeee
Q 012331 12 SGLGKGVTASSIGVLLKACGL--------RVTCIKI 39 (466)
Q Consensus 12 s~~gkgi~~as~g~ll~~~g~--------~v~~~K~ 39 (466)
-|=|||-|+|++|..|++.|. ||.++.|
T Consensus 207 TG~GKGKTTAAlGlAlRA~G~G~~~~~~~rV~ivQF 242 (382)
T PRK07413 207 TGEGKGKSTSALGKALQAIGRGISQDKSHRVLILQW 242 (382)
T ss_pred eCCCCCchHHHHHHHHHHhcCCCCcccCceEEEEEE
Confidence 466999999999999999764 5777665
No 474
>PRK06217 hypothetical protein; Validated
Probab=25.05 E-value=75 Score=29.44 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll 27 (466)
|+-|+|+| .||-||...|..|+..|
T Consensus 1 ~~~I~i~G--~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 1 MMRIHITG--ASGSGTTTLGAALAERL 25 (183)
T ss_pred CeEEEEEC--CCCCCHHHHHHHHHHHc
Confidence 56699999 68999999998888765
No 475
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=24.98 E-value=1e+02 Score=30.00 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=28.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
|+++| ++|-||-..|..|+..|...|++|..+-.
T Consensus 2 Ivl~G--~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTG--LPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEc--CCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 67787 57889999999999999998888866633
No 476
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=24.85 E-value=4.6e+02 Score=24.54 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=19.2
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEe
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGI 397 (466)
.++|||++.+...+ ...++.+...++|+..+
T Consensus 54 ~~vdgiii~~~~~~------~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 54 RRPAGLILTGLEHT------ERTRQLLRAAGIPVVEI 84 (268)
T ss_pred cCCCEEEEeCCCCC------HHHHHHHHhcCCCEEEE
Confidence 46899998764321 13344555667888765
No 477
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=24.80 E-value=82 Score=37.80 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=63.7
Q ss_pred CCCeeEEcccc-------------------hHHHHHHHHHHhcccCCCCCCCCcEEEEeeCccccccCcchHHHHHHHhh
Q 012331 107 LGKTVQVVPHI-------------------TDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFS 167 (466)
Q Consensus 107 lg~tvqviPHi-------------------t~ei~~~i~~~~~~pvd~~~~~~d~~i~EigGtvGdiEs~pf~ea~rq~~ 167 (466)
||||.|||-.. -|-+.+|.....+--++ ....-++=|-|| +||-++|--.| ++...+
T Consensus 707 LGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~EFekWm~~-~e~~~~leV~eL-~~vkr~e~R~~--~L~~W~ 782 (1567)
T KOG1015|consen 707 LGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNEFEKWMEG-LEDDEKLEVSEL-ATVKRPEERSY--MLQRWQ 782 (1567)
T ss_pred ccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHHHHHhccc-ccccccceeehh-hhccChHHHHH--HHHHHH
Confidence 89999998532 35677777776542222 122234556677 58999876553 344554
Q ss_pred hhcCCCCEEEEEeeeeeeecCCCccccCc-hhhhHHHhhcCCCcccEEEEecCCCC
Q 012331 168 YRVGPGNFCLIHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVAL 222 (466)
Q Consensus 168 ~~~g~~n~~~ih~t~vp~~~~~~e~KtKp-tQhsvk~LrS~GI~pd~lV~Rs~~~l 222 (466)
.+ .-||.|--++.-.|...--.|.+- --.-.+.| ...=||++||-+-+-|
T Consensus 783 ~~---ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~l--vdpGPD~vVCDE~HiL 833 (1567)
T KOG1015|consen 783 ED---GGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKAL--VDPGPDFVVCDEGHIL 833 (1567)
T ss_pred hc---CCEEEEehHHHHHHhcccchhhhHHHHHHHHhc--cCCCCCeEEecchhhh
Confidence 44 358888877766665433333322 22233444 3445899999987644
No 478
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=24.72 E-value=5.6e+02 Score=26.90 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=59.1
Q ss_pred cccCchhhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHcchhhhhHhhcC
Q 012331 192 QKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN 271 (466)
Q Consensus 192 ~KtKptQhsvk~LrS~GI~pd~lV~Rs~~~l~s~~r~KisL~~~l~~~~Vi~i~dVdTrY~lpl~LreqG~~~~ii~~l~ 271 (466)
.|=---.-+++.|.+.| +|++|+|....-....-++.+ .+. .||+.=|=..- +=+
T Consensus 86 ~KGEtL~DT~~tl~ayg--~D~iViRH~~egaa~~~a~~~---~~~--pvINaGDG~~q-HPT----------------- 140 (316)
T COG0540 86 KKGETLADTIRTLSAYG--VDAIVIRHPEEGAARLLAEFS---GVN--PVINAGDGSHQ-HPT----------------- 140 (316)
T ss_pred cccccHHHHHHHHHhhC--CCEEEEeCccccHHHHHHHhc---CCC--ceEECCCCCCC-Ccc-----------------
Confidence 45446778899999888 899999987644443333333 332 36655443222 111
Q ss_pred CCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEeccCCchhhHHHHHHHHHHcCCceeE
Q 012331 272 LQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329 (466)
Q Consensus 272 l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~g~~Day~SI~~aL~~aG~~~~v 329 (466)
+..++-| .+.+.... -+..+||++|.- .....-+|..++|...|.++.+
T Consensus 141 ------Q~LLDl~-TI~~~~G~-~~gl~iaivGDl-khsRva~S~~~~L~~~ga~v~l 189 (316)
T COG0540 141 ------QALLDLY-TIREEFGR-LDGLKIAIVGDL-KHSRVAHSNIQALKRFGAEVYL 189 (316)
T ss_pred ------HHHHHHH-HHHHHhCC-cCCcEEEEEccc-cchHHHHHHHHHHHHcCCEEEE
Confidence 1111211 11111111 235789999953 3344667888999999976654
No 479
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=24.71 E-value=1e+02 Score=29.08 Aligned_cols=32 Identities=41% Similarity=0.528 Sum_probs=23.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
+|-++||||- ++|| +++.+.|-++|++|.+.=
T Consensus 1 ~~~vlItGa~-g~lG-----~~l~~~l~~~g~~v~~~~ 32 (255)
T TIGR01963 1 GKTALVTGAA-SGIG-----LAIALALAAAGANVVVND 32 (255)
T ss_pred CCEEEEcCCc-chHH-----HHHHHHHHHCCCEEEEEe
Confidence 4679999975 5555 566677778898877753
No 480
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=24.70 E-value=3.9e+02 Score=27.07 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCEEEecC-CCCCCCchhHHHHHHHHHHcCCcEE---EehHH
Q 012331 362 GADGILVPG-GFGNRGVQGKILAAKYAREHRIPYL---GICLG 400 (466)
Q Consensus 362 ~~DGIllPG-GfG~rg~eG~i~aIk~are~~iPvL---GICLG 400 (466)
.+|||+++| |-|.+.....+..++.+. ..+|+| |++..
T Consensus 171 ~aDavivtG~~TG~~~d~~~l~~vr~~~-~~~PvllggGvt~e 212 (257)
T TIGR00259 171 LADAVILSGKTTGTEVDLELLKLAKETV-KDTPVLAGSGVNLE 212 (257)
T ss_pred CCCEEEECcCCCCCCCCHHHHHHHHhcc-CCCeEEEECCCCHH
Confidence 489999999 777765545555555432 357976 55544
No 481
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.69 E-value=71 Score=29.08 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCCcEEEEeeCccccccCcch-HHHHHHHhhhhcCCC--CEEEEEeeeeeee
Q 012331 138 GPVDVCVIELGGTIGDIESMP-FIEALGQFSYRVGPG--NFCLIHVSLVPVL 186 (466)
Q Consensus 138 ~~~d~~i~EigGtvGdiEs~p-f~ea~rq~~~~~g~~--n~~~ih~t~vp~~ 186 (466)
.+||+|+|.+|.- |+-+.+ |.+.++++-..+-.. ++-.+.++..|+.
T Consensus 56 ~~pd~vii~~G~N--D~~~~~~~~~~~~~~i~~i~~~~p~~~iil~~~~~~~ 105 (177)
T cd01844 56 VPADLYIIDCGPN--IVGAEAMVRERLGPLVKGLRETHPDTPILLVSPRYCP 105 (177)
T ss_pred cCCCEEEEEeccC--CCccHHHHHHHHHHHHHHHHHHCcCCCEEEEecCCCC
Confidence 4799999999976 776665 776666555444322 2345555665553
No 482
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=24.65 E-value=81 Score=30.06 Aligned_cols=81 Identities=22% Similarity=0.199 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHcCCceeEEeEEEEeeCCCcccccccCCchhhHHHHHHccC-CCEEEecCCCCC--CCchhHHHHHHHHH
Q 012331 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG-ADGILVPGGFGN--RGVQGKILAAKYAR 388 (466)
Q Consensus 312 ay~SI~~aL~~aG~~~~v~v~i~~i~s~~l~~~~~~~~p~~y~~~~~~L~~-~DGIllPGGfG~--rg~eG~i~aIk~ar 388 (466)
+=.-+.+.|+.+|..+.. .. +-+++.+. -..+..+.+.+ +|.|+..||-|- |.. ..+|++...
T Consensus 28 sG~~l~~~L~~ag~~~~~---~~-iV~D~~~~--------I~~~l~~~~~~~~DvvlttGGTG~t~RDv--TpEA~~~~~ 93 (169)
T COG0521 28 SGPLLVELLEEAGHNVAA---YT-IVPDDKEQ--------IRATLIALIDEDVDVVLTTGGTGITPRDV--TPEATRPLF 93 (169)
T ss_pred chhHHHHHHHHcCCccce---EE-EeCCCHHH--------HHHHHHHHhcCCCCEEEEcCCccCCCCcC--CHHHHHHHH
Confidence 445678899999988722 11 22322110 00011122233 899999997665 444 467888888
Q ss_pred HcCCcEEEehHHHHHHHHHh
Q 012331 389 EHRIPYLGICLGMQVAVIEF 408 (466)
Q Consensus 389 e~~iPvLGICLGmQllaia~ 408 (466)
++.+|=|| -=|..+..+.
T Consensus 94 dKeipGFg--E~fR~~S~~~ 111 (169)
T COG0521 94 DKEIPGFG--ELFRRLSLEE 111 (169)
T ss_pred hccCCcHH--HHHHHhhhhc
Confidence 88888333 2234444444
No 483
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=24.64 E-value=93 Score=31.45 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=24.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~ 39 (466)
|-|+||||- |-..+.+...|.++|++|..+-.
T Consensus 1 ~~vlVTGat------GfIG~~l~~~L~~~G~~V~~~~r 32 (343)
T TIGR01472 1 KIALITGIT------GQDGSYLAEFLLEKGYEVHGLIR 32 (343)
T ss_pred CeEEEEcCC------CcHHHHHHHHHHHCCCEEEEEec
Confidence 568999985 56667777888888999887643
No 484
>PLN02686 cinnamoyl-CoA reductase
Probab=24.61 E-value=1.1e+02 Score=31.78 Aligned_cols=31 Identities=32% Similarity=0.307 Sum_probs=24.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
+|-|+||||. |-+.+.+-..|.++|++|.+.
T Consensus 53 ~k~VLVTGat------GfIG~~lv~~L~~~G~~V~~~ 83 (367)
T PLN02686 53 ARLVCVTGGV------SFLGLAIVDRLLRHGYSVRIA 83 (367)
T ss_pred CCEEEEECCc------hHHHHHHHHHHHHCCCEEEEE
Confidence 3779999986 566777778888889988754
No 485
>PRK12747 short chain dehydrogenase; Provisional
Probab=24.61 E-value=89 Score=29.78 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=21.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~ 36 (466)
|.++||||- +|||.. +.+.|.+.|++|.+
T Consensus 5 k~~lItGas-~gIG~~-----ia~~l~~~G~~v~~ 33 (252)
T PRK12747 5 KVALVTGAS-RGIGRA-----IAKRLANDGALVAI 33 (252)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCeEEE
Confidence 789999975 677654 45667788988765
No 486
>PRK07775 short chain dehydrogenase; Provisional
Probab=24.47 E-value=86 Score=30.60 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=21.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||- ++||+ .+.+-|.++|++|.+.
T Consensus 11 ~~vlVtGa~-g~iG~-----~la~~L~~~G~~V~~~ 40 (274)
T PRK07775 11 RPALVAGAS-SGIGA-----ATAIELAAAGFPVALG 40 (274)
T ss_pred CEEEEECCC-chHHH-----HHHHHHHHCCCEEEEE
Confidence 689999984 67764 4556666789887654
No 487
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.45 E-value=93 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=23.4
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~-s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|.++||||-- +|||+.+ .+.|-+.|++|.+.
T Consensus 6 k~~lItGas~~~GIG~ai-----A~~la~~G~~Vil~ 37 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGI-----AKACFEQGAELAFT 37 (274)
T ss_pred cEEEEECCCCCCCHHHHH-----HHHHHHCCCEEEEE
Confidence 7899999975 7888654 56666789888653
No 488
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.42 E-value=1e+02 Score=35.24 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=34.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~DpY 42 (466)
|-|.|| +...|.||=.+|+.++..|...|.||-+|-.||.
T Consensus 547 kvi~vt-s~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 547 EVVETQ-RPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred eEEEee-cCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 445555 4568899999999999999999999999999987
No 489
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=24.40 E-value=1.3e+02 Score=23.29 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=19.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLR 33 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~ 33 (466)
++||+++. |..|+-....|++.||.
T Consensus 52 ~vv~~c~~-------~~~a~~~~~~l~~~G~~ 76 (89)
T cd00158 52 PIVVYCRS-------GNRSARAAKLLRKAGGT 76 (89)
T ss_pred eEEEEeCC-------CchHHHHHHHHHHhCcc
Confidence 56777765 56888889999999854
No 490
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.39 E-value=3.6e+02 Score=26.16 Aligned_cols=33 Identities=18% Similarity=-0.039 Sum_probs=20.6
Q ss_pred cCCCEEEecCCCCCCCchhHHHHHHHHHHcCCcEEEe
Q 012331 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (466)
Q Consensus 361 ~~~DGIllPGGfG~rg~eG~i~aIk~are~~iPvLGI 397 (466)
.++|||++.+.. . ......++.+++.++|+.-+
T Consensus 55 ~~~dgiii~~~~--~--~~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 55 QKPDIIISIPVD--P--VSTAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred hCCCEEEEcCCC--c--hhhhHHHHHHHHcCCcEEEe
Confidence 479999996422 1 11234566777788997543
No 491
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=24.37 E-value=3.7e+02 Score=23.95 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=57.3
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEccc--------------------------chHHHHHHHHHHhcccCCC
Q 012331 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPH--------------------------ITDEIQDWIERVAMIPVDG 135 (466)
Q Consensus 82 l~~~~n~t~gkiy~~vi~ker~g~ylg~tvqviPH--------------------------it~ei~~~i~~~~~~pvd~ 135 (466)
|.+.+-+.+.+=|+.|.++=|+=.--+=++++.|+ +-|-||++|+.+...-.+.
T Consensus 2 l~k~~RL~k~~eF~~v~~~G~r~~~~~~vl~~~~~~~~~~~~~~~~~R~G~~VsKKvG~AV~RNRiKR~lRe~~R~~~~~ 81 (122)
T PRK03459 2 LPEQHKLRSSMQFRTTVRKGRRAGRRTVVVHLFDSAEAGEVASFGGPRFGLVVSKAVGNAVIRHRVSRRLRHICADIVDQ 81 (122)
T ss_pred CCcccccCCHHHHHHHHHcCeEccCCEEEEEEecCCCcccccCCCCCEEEEEEeeeccchhHHHHHHHHHHHHHHHhhhc
Confidence 45667788888899998766654434446777664 2577888888776432222
Q ss_pred CCCCCcEEEEeeCccccccCcchHHHHHHHhhhhc
Q 012331 136 KEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRV 170 (466)
Q Consensus 136 ~~~~~d~~i~EigGtvGdiEs~pf~ea~rq~~~~~ 170 (466)
-..+.|+|||=--+ ++..+|-|...+|..-+
T Consensus 82 l~~g~D~Viiar~~----~~~~~~~~l~~~l~~ll 112 (122)
T PRK03459 82 VPETHHVVIRALPG----AATASSAELERDVRAGL 112 (122)
T ss_pred cCCCcEEEEEECcc----cccCCHHHHHHHHHHHH
Confidence 23567999987665 45578887777776543
No 492
>PRK06196 oxidoreductase; Provisional
Probab=24.35 E-value=83 Score=31.52 Aligned_cols=31 Identities=42% Similarity=0.514 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K 38 (466)
|.|+||||- +|||+-++ +.|.++|++|.+.=
T Consensus 27 k~vlITGas-ggIG~~~a-----~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 27 KTAIVTGGY-SGLGLETT-----RALAQAGAHVIVPA 57 (315)
T ss_pred CEEEEeCCC-chHHHHHH-----HHHHHCCCEEEEEe
Confidence 679999986 78876554 45667899887753
No 493
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=24.13 E-value=1e+02 Score=30.70 Aligned_cols=30 Identities=43% Similarity=0.398 Sum_probs=24.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-|+|||| -|-+.+.+...|.++|++|...
T Consensus 6 ~~vlVTGa------tG~iG~~l~~~L~~~g~~V~~~ 35 (322)
T PLN02986 6 KLVCVTGA------SGYIASWIVKLLLLRGYTVKAT 35 (322)
T ss_pred CEEEEECC------CcHHHHHHHHHHHHCCCEEEEE
Confidence 67999997 3777788888888899998754
No 494
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=24.11 E-value=82 Score=30.10 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=26.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 012331 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (466)
Q Consensus 3 ~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v 34 (466)
.|.+|| +||-||-..|.+|-+.|-.||.--
T Consensus 33 viWiTG--LSgSGKStlACaL~q~L~qrgkl~ 62 (207)
T KOG0635|consen 33 VIWITG--LSGSGKSTLACALSQALLQRGKLT 62 (207)
T ss_pred EEEEec--cCCCCchhHHHHHHHHHHhcCceE
Confidence 478888 899999999999999999888643
No 495
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=24.10 E-value=3.5e+02 Score=24.32 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=25.8
Q ss_pred CCCCcEEEEeeCccccccCcc----hHHHHHHHhhhhcCCCCEEEEEeeeee
Q 012331 137 EGPVDVCVIELGGTIGDIESM----PFIEALGQFSYRVGPGNFCLIHVSLVP 184 (466)
Q Consensus 137 ~~~~d~~i~EigGtvGdiEs~----pf~ea~rq~~~~~g~~n~~~ih~t~vp 184 (466)
..+||+|++.+|.- |.-.. -|.+.+++|-....+.+..+|-++..|
T Consensus 57 ~~~~d~v~i~~G~N--D~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p 106 (183)
T cd04501 57 ALKPAVVIIMGGTN--DIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLP 106 (183)
T ss_pred hcCCCEEEEEeccC--ccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 34799999999754 54321 255555555554433344444445444
No 496
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.03 E-value=2e+02 Score=25.60 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=12.0
Q ss_pred CCCcEEEEeeCcccccc
Q 012331 138 GPVDVCVIELGGTIGDI 154 (466)
Q Consensus 138 ~~~d~~i~EigGtvGdi 154 (466)
.+||++++.+|+ .|+
T Consensus 47 ~~pd~vvl~~G~--ND~ 61 (169)
T cd01828 47 LQPKAIFIMIGI--NDL 61 (169)
T ss_pred cCCCEEEEEeec--cCC
Confidence 468999999995 465
No 497
>PRK02496 adk adenylate kinase; Provisional
Probab=23.99 E-value=92 Score=28.65 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=19.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll 27 (466)
|+-|+|+|+ +|-||+..|.-|...+
T Consensus 1 ~~~i~i~G~--pGsGKst~a~~la~~~ 25 (184)
T PRK02496 1 MTRLIFLGP--PGAGKGTQAVVLAEHL 25 (184)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHh
Confidence 566899998 8999988888777644
No 498
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=23.91 E-value=1.1e+02 Score=29.23 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=21.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 012331 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (466)
Q Consensus 1 ~k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v 34 (466)
|+-|.+|||.-| || |+++++|++.|+.|
T Consensus 1 m~~igitG~igs--GK----st~~~~l~~~g~~v 28 (200)
T PRK14734 1 MLRIGLTGGIGS--GK----STVADLLSSEGFLI 28 (200)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHCCCeE
Confidence 678999999655 56 46778888888864
No 499
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.88 E-value=84 Score=30.11 Aligned_cols=30 Identities=40% Similarity=0.666 Sum_probs=21.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 012331 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (466)
Q Consensus 2 k~i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~ 37 (466)
|-++|||| -++||+.+ .+.|-.+|++|.+.
T Consensus 16 k~vlItGa-s~gIG~~i-----a~~l~~~G~~v~~~ 45 (258)
T PRK06935 16 KVAIVTGG-NTGLGQGY-----AVALAKAGADIIIT 45 (258)
T ss_pred CEEEEeCC-CchHHHHH-----HHHHHHCCCEEEEE
Confidence 67899998 46777654 45566789887664
No 500
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=23.87 E-value=1e+02 Score=35.44 Aligned_cols=34 Identities=35% Similarity=0.365 Sum_probs=28.8
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 012331 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (466)
Q Consensus 4 i~vtggv~s~~gkgi~~as~g~ll~~~g~~v~~~K~Dp 41 (466)
++|+|. ||-||-.++..|-..+.+.|-+|.+ |||
T Consensus 433 ~~I~G~--tGsGKS~~~~~l~~~~~~~g~~v~i--iD~ 466 (797)
T TIGR02746 433 IAVVGG--SGAGKSFFMQELIVDNLSRGGKVWV--IDV 466 (797)
T ss_pred eEEEcC--CCCCHHHHHHHHHHHHHhCCCEEEE--EeC
Confidence 678885 8999999999998888889988766 677
Done!