BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012332
(466 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BOB|A Chain A, Histone Acetyltransferase Hat1 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
Length = 320
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 158/352 (44%), Gaps = 64/352 (18%)
Query: 32 ANQCIKIYLVSSKEEVGVSDSFSIDPVDLNSFFDEDGKIYGYQGLKITIWISSISFHAFA 91
AN+ +++ +V ++ P+ + + KIYGY+ L I + S++F +
Sbjct: 15 ANEALRVSIVGE-------NAVQFSPLFTYPIYGDSEKIYGYKDLIIHLAFDSVTFKPYV 67
Query: 92 DITFQSTSDRGKGITDLKSALQRIFA--ETLVENKDDFLQTFSTEKDFTRSAVSSGQILQ 149
++ + S I D++ L + +V ++ ++ F+ E+
Sbjct: 68 NVKY-SAKLGDDNIVDVEKKLLSFLPKDDVIVRDEAKWVDCFAEERK------------T 114
Query: 150 HKVSNGHVTHCNNNLKAAASDLEVVRMVVGNMEAGHLYSRLIPLVLLLVDGSNPIDVTDP 209
H +S+ V + + V + + + A ++ R+ LL ++ +N ID TDP
Sbjct: 115 HNLSD--VFEKVSEYSLNGEEFVVYKSSLVDDFARRMHRRVQIFSLLFIEAANYIDETDP 172
Query: 210 RWELYILIRKKMDQQGDIQHRLLGFTAIYRFYHYPDST----------RMRLSQILILPP 259
W++Y L+ KK + L+GF Y+++HY + R ++SQ LI PP
Sbjct: 173 SWQIYWLLNKKTKE-------LIGFVTTYKYWHYLGAKSFDEDIDKKFRAKISQFLIFPP 225
Query: 260 YQRKGYGGFLTE-VLSNVAVAENVHDFTVEEPLDSFQHVRTCVDIQHL--LAFEPIQHAI 316
YQ KG+G L E ++ + +++ + TVE+P ++F +R DIQ L L ++ +
Sbjct: 226 YQNKGHGSCLYEAIIQSWLEDKSITEITVEDPNEAFDDLRDRNDIQRLRKLGYDAVFQ-- 283
Query: 317 NSAVSHLKQGKLSKKILAPRFVPPASTVEEVRKVLKINKKQFLQCWEILIYL 368
K LS + L E RK LK+ ++QF + E+L+ L
Sbjct: 284 -------KHSDLSDEFL-----------ESSRKSLKLEERQFNRLVEMLLLL 317
>pdb|2P0W|A Chain A, Human Histone Acetyltransferase 1 (Hat1)
pdb|2P0W|B Chain B, Human Histone Acetyltransferase 1 (Hat1)
Length = 324
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 124/280 (44%), Gaps = 23/280 (8%)
Query: 32 ANQCIKIYLVSSKEEVGVSDSFSIDPVDLNSFFDEDGKIYGYQGLKITIWISSISFHAFA 91
N I++ LV E++ +D + P + F +D +GY+GLKI ++ + S
Sbjct: 12 TNTAIELKLVRFPEDLE-NDIRTFFPEYTHQLFGDDETAFGYKGLKILLYYIAGSLSTMF 70
Query: 92 DITFQSTSDRGKGIT---DLKSALQRIFAETLVENKDDFLQTFSTEKDFTRSAVSSGQIL 148
+ + S D D++ +++I N +DFL E DF
Sbjct: 71 RVEYASKVDENFDCVEADDVEGKIRQIIPPGFCTNTNDFLSLLEKEVDFK---------- 120
Query: 149 QHKVSNGHVTHCNNNLKAAASDLEVVRMVVGNMEAGHL---YSRLIPLVLLLVDGSNPID 205
G + H + L + ++ +M + RL ++ ++ ++ ID
Sbjct: 121 ----PFGTLLHTYSVLSPTGGENFTFQIYKADMTCRGFREYHERLQTFLMWFIETASFID 176
Query: 206 VTDPRWELYILIRKKMDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGY 265
V D RW Y L+ +K ++ G +G+ +Y +Y YPD TR R+SQ+LIL P+Q +G+
Sbjct: 177 VDDERWH-YFLVFEKYNKDGATLFATVGYMTVYNYYVYPDKTRPRVSQMLILTPFQGQGH 235
Query: 266 GGFLTEVLSNVAVA-ENVHDFTVEEPLDSFQHVRTCVDIQ 304
G L E + V D T E+P S+ +R V ++
Sbjct: 236 GAQLLETVHRYYTEFPTVLDITAEDPSKSYVKLRDFVLVK 275
>pdb|2OU2|A Chain A, Acetyltransferase Domain Of Human Hiv-1 Tat Interacting
Protein, 60kda, Isoform 3
Length = 280
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 233 GFTAIYRFYHYPDSTR-MRLSQILILPPYQRKGYGGFLTEVLSNVAVAENVHDFTVEEPL 291
GF + F +ST ++ IL LPPYQR+GYG L E ++ E T E+PL
Sbjct: 122 GFHIVGYFSKEKESTEDYNVACILTLPPYQRRGYGKLLIEFSYELSKVEGKTG-TPEKPL 180
>pdb|2Y0M|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Mof
Length = 287
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 244 PDSTRMRLSQILILPPYQRKGYGGFL 269
PD + + IL LPPYQR+GYG FL
Sbjct: 138 PDGNNV--AXILTLPPYQRRGYGKFL 161
>pdb|4DNC|A Chain A, Crystal Structure Of Human Mof In Complex With Msl1
pdb|4DNC|B Chain B, Crystal Structure Of Human Mof In Complex With Msl1
Length = 289
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 244 PDSTRMRLSQILILPPYQRKGYGGFL 269
PD + + IL LPPYQR+GYG FL
Sbjct: 140 PDGNNV--ACILTLPPYQRRGYGKFL 163
>pdb|3TOA|A Chain A, Human Mof Crystal Structure With Active Site Lysine
Partially Acetylated
Length = 266
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 244 PDSTRMRLSQILILPPYQRKGYGGFL 269
PD + + IL LPPYQR+GYG FL
Sbjct: 134 PDGNNV--ACILTLPPYQRRGYGKFL 157
>pdb|2PQ8|A Chain A, Myst Histone Acetyltransferase 1
Length = 278
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 244 PDSTRMRLSQILILPPYQRKGYGGFL 269
PD + + IL LPPYQR+GYG FL
Sbjct: 138 PDGNNV--ACILTLPPYQRRGYGKFL 161
>pdb|3TOB|A Chain A, Human Mof E350q Crystal Structure With Active Site Lysine
Partially Acetylated
Length = 270
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 244 PDSTRMRLSQILILPPYQRKGYGGFL 269
PD + + IL LPPYQR+GYG FL
Sbjct: 134 PDGNNV--ACILTLPPYQRRGYGKFL 157
>pdb|2GIV|A Chain A, Human Myst Histone Acetyltransferase 1
Length = 295
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 244 PDSTRMRLSQILILPPYQRKGYGGFL 269
PD + + IL LPPYQR+GYG FL
Sbjct: 155 PDGNNV--ACILTLPPYQRRGYGKFL 178
>pdb|3QAH|A Chain A, Crystal Structure Of Apo-Form Human Mof Catalytic Domain
Length = 304
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 244 PDSTRMRLSQILILPPYQRKGYGGFL 269
PD + + IL LPPYQR+GYG FL
Sbjct: 164 PDGNNV--ACILTLPPYQRRGYGKFL 187
>pdb|2RC4|A Chain A, Crystal Structure Of The Hat Domain Of The Human Moz
Protein
Length = 287
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 248 RMRLSQILILPPYQRKGYGGFLTE 271
+ +S I+ILP YQRKGYG FL +
Sbjct: 141 KYNVSCIMILPQYQRKGYGRFLID 164
>pdb|2OZU|A Chain A, Crystal Structure Of Human Myst Histone Acetyltransferase
3 In Complex With Acetylcoenzyme A
Length = 284
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 248 RMRLSQILILPPYQRKGYGGFLTE 271
+ +S I+ILP YQRKGYG FL +
Sbjct: 145 KYNVSCIMILPQYQRKGYGRFLID 168
>pdb|1MJ9|A Chain A, Crystal Structure Of Yeast Esa1(C304s) Mutant Complexed
With Coenzyme A
Length = 278
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 221 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 280
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 119 MTRRDELGHHLVGYFSKEK----ESADGYNVASILTLPQYQRMGYGKLLIEFSYELSKKE 174
Query: 281 N 281
N
Sbjct: 175 N 175
>pdb|1MJA|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
Domain Complexed With Acetyl Coenzyme A
Length = 278
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 221 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 280
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 119 MTRRDELGHHLVGYFSKEK----ESADGYNVAXILTLPQYQRMGYGKLLIEFSYELSKKE 174
Query: 281 N 281
N
Sbjct: 175 N 175
>pdb|1MJB|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
E338q Mutant Complexed With Acetyl Coenzyme A
Length = 278
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 221 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 280
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 119 MTRRDELGHHLVGYFSKEK----ESADGYNVAXILTLPQYQRMGYGKLLIEFSYELSKKE 174
Query: 281 N 281
N
Sbjct: 175 N 175
>pdb|3TO6|A Chain A, Crystal Structure Of Yeast Esa1 Hat Domain Complexed With
H4k16coa Bisubstrate Inhibitor
pdb|3TO7|A Chain A, Crystal Structure Of Yeast Esa1 Hat Domain Bound To
Coenzyme A With Active Site Lysine Acetylated
Length = 276
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 221 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 280
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 117 MTRRDELGHHLVGYFSKEK----ESADGYNVACILTLPQYQRMGYGKLLIEFSYELSKKE 172
Query: 281 N 281
N
Sbjct: 173 N 173
>pdb|1FY7|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
Domain Complexed With Coenzyme A
Length = 278
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 221 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 280
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 119 MTRRDELGHHLVGYFSKEK----ESADGYNVACILTLPQYQRMGYGKLLIEFSYELSKKE 174
Query: 281 N 281
N
Sbjct: 175 N 175
>pdb|3TO9|A Chain A, Crystal Structure Of Yeast Esa1 E338q Hat Domain Bound To
Coenzyme A With Active Site Lysine Acetylated
Length = 276
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 221 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 280
M ++ ++ H L+G+ + + + ++ IL LP YQR GYG L E ++ E
Sbjct: 117 MTRRDELGHHLVGYFSKEK----ESADGYNVACILTLPQYQRMGYGKLLIEFSYELSKKE 172
Query: 281 N 281
N
Sbjct: 173 N 173
>pdb|4GMO|A Chain A, Crystal Structure Of Syo1
Length = 684
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 286 TVEEPLDSFQHVRT-CVDIQHLLAFEPIQHAINSAVSHLKQGKLSKKILAPRFVPPASTV 344
++EEP D FQ + C+ + LA +P +N V L + VPPA V
Sbjct: 544 SIEEPEDPFQGLGVKCIGVVGSLAHDPAPIEVNREVGVF----LVTLLRQSNNVPPAEIV 599
Query: 345 EEVRKVLKINKKQFLQC 361
E + ++ I + L C
Sbjct: 600 EALNQLFDIYGDEELAC 616
>pdb|4GMN|A Chain A, Structural Basis Of Rpl5 Recognition By Syo1
Length = 676
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 286 TVEEPLDSFQHVRT-CVDIQHLLAFEPIQHAINSAVSHLKQGKLSKKILAPRFVPPASTV 344
++EEP D FQ + C+ + LA +P +N V L + VPPA V
Sbjct: 544 SIEEPEDPFQGLGVKCIGVVGSLAHDPAPIEVNREVGVF----LVTLLRQSNNVPPAEIV 599
Query: 345 EEVRKVLKINKKQFLQC 361
E + ++ I + L C
Sbjct: 600 EALNQLFDIYGDEELAC 616
>pdb|1YIF|A Chain A, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|B Chain B, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|C Chain C, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|D Chain D, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
Length = 533
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Query: 1 MGQKKNPSADPVSEPKKRRRVG-----FSDVDEGVEANQCIKIYLVSSKEEVGVSDSFSI 55
+ K NP++ V P G ++DV A + YLV+ + ++ +S
Sbjct: 61 LDMKGNPNSGGVWAPCLSYSDGKFWLIYTDVKVVDGAWKDCHNYLVTCET---INGDWS- 116
Query: 56 DPVDLNS-------FFDEDGKIYGYQGLKITIWISSISFHAFADITFQSTSDR 101
+P+ LNS F D DGK Y L +W I H+F I Q SD+
Sbjct: 117 EPIKLNSSGFDASLFHDTDGKKY----LLNMLWDHRIDRHSFGGIVIQEYSDK 165
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 221 MDQQGDIQHRLLGFTAIYRFYHYPDSTRMRLSQILILPPYQRKGYGGFLTEVLSNVAVAE 280
+ Q G ++ R + A + P+S +S + P K LT+ + +AV
Sbjct: 84 IQQNGVVEERSYPYVAREQRCRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVII 143
Query: 281 NVHDFTVEEPLDSFQHVRTCVDIQHLLAFEPIQHAIN 317
+ D L +FQH IQH ++P HA+N
Sbjct: 144 GIKD------LRAFQHYDGRTIIQHDNGYQPNYHAVN 174
>pdb|1H99|A Chain A, Prd Of Lict Antiterminator From Bacillus Subtilis
Length = 224
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 105 ITDLKSALQRIFAETLVENKDDFL 128
+TDLK QR+F T +E++DDFL
Sbjct: 152 VTDLKFFAQRLFNGTHMESEDDFL 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,536,103
Number of Sequences: 62578
Number of extensions: 558712
Number of successful extensions: 1277
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1249
Number of HSP's gapped (non-prelim): 29
length of query: 466
length of database: 14,973,337
effective HSP length: 102
effective length of query: 364
effective length of database: 8,590,381
effective search space: 3126898684
effective search space used: 3126898684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)