BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012334
(466 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1
SV=1
Length = 469
Score = 527 bits (1358), Expect = e-149, Method: Compositional matrix adjust.
Identities = 279/472 (59%), Positives = 355/472 (75%), Gaps = 18/472 (3%)
Query: 1 MAAKSPVKEPPGTSAVNPTTP---------LAPPPVKPELPSSS-EPDVVNVPSYSRWFS 50
MA K+P +P G+ + P+TP A +LPSSS + D ++VPSYS WFS
Sbjct: 1 MAMKAP--DPGGSGEILPSTPSLSETTSGGAAAASKSAQLPSSSSDIDNIHVPSYSSWFS 58
Query: 51 FDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDV 110
+ I++CEV+ LPEFFDSRS SKNP+ Y Y R+SI+K YR++ RKI+FTDVRRTLV DV
Sbjct: 59 WTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKISFTDVRRTLVSDV 118
Query: 111 GSIRRVFDFLETWGLINY--FASVKTLKWEDKETKSSA--ASAESSSALKETSKRLCNGC 166
SIRRVFDFL++WGLINY AS K LKWE+KE SA A++E ++ +KET+KR CNGC
Sbjct: 119 VSIRRVFDFLDSWGLINYNSSASAKPLKWEEKEAGKSAGDAASEPATTVKETAKRNCNGC 178
Query: 167 KTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLE 226
K +C+IACFACDKYDLTLCARCYVR N+RVG++SS+F+RVEISEE++ +W++KE L LLE
Sbjct: 179 KAICSIACFACDKYDLTLCARCYVRSNYRVGINSSEFKRVEISEESKPEWSDKEILLLLE 238
Query: 227 AIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDA 286
A+MH+GDDW+KVA HV G++EKDC++ F+KLPFG++F+ KESDSED F I +
Sbjct: 239 AVMHYGDDWKKVASHVIGRTEKDCVSQFVKLPFGEQFV-KESDSEDGLEMFDQIKDSDIP 297
Query: 287 VSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTLSDVDD 346
SE + +SP+KR++LTPLADASNPIMAQAAFLSALAG +AE AARAAV LSDVD
Sbjct: 298 ESEGIDKDGSSPNKRIKLTPLADASNPIMAQAAFLSALAGTNVAEAAARAAVRALSDVDY 357
Query: 347 RASKGSLMRNTRQQEAGVASNGDATQNALARASVDASSLIEKEELDVEKAISGIVEVQMK 406
A K + R+ +Q+A AS+G+ T+N RA DA SLIEKEE +VE AI VEV+MK
Sbjct: 358 EADKNA-SRDPNRQDANAASSGETTRNESERAWADAKSLIEKEEHEVEGAIKETVEVEMK 416
Query: 407 EIQDKIIRFESLDLQMEEEWKQLEQVKNLLFVDQLSVLFHKSNARKNGDRTE 458
+I+D+I+ FE LDL+ME KQLE+V+NLLFVDQL++ FH ARK DR E
Sbjct: 417 KIRDRIVHFEKLDLEMERSRKQLEEVRNLLFVDQLNIFFHTRKARKTEDRIE 468
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 171 bits (434), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 128/493 (25%), Positives = 228/493 (46%), Gaps = 84/493 (17%)
Query: 22 LAPPPV-KPELPSSSEPDVVNV-PSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYR 79
++PPP+ E D+V+V P +S WF+ +++ E + +P+FF +SP+ P Y
Sbjct: 156 ISPPPIMDGEGVVKRFGDLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYM 215
Query: 80 YYRDSIVKHYRENPSRKITFTDVRRTLVG-DVGSIRRVFDFLETWGLINYFASVKT---- 134
+R++IV Y ENP + +T +D + + G D+ RVF FL+ WG+INY A+ ++
Sbjct: 216 EFRNAIVSKYVENPEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGP 275
Query: 135 ----------------------------LKWEDKETKSSAASAESS-SALKETSKRL--- 162
+K++ + SS +L S L
Sbjct: 276 LRDVSDVREDTNGEVNVPSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSLDGDSPDLDIR 335
Query: 163 ---------CNGC-KTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVE----I 208
CN C + L T+ + K D+ LC C+ G VG S DF RV+
Sbjct: 336 IREHLCDSHCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFY 395
Query: 209 SEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEF----- 263
++ +WT++ETL LLEA+ + ++W ++A HV KS+ CI HF++LP
Sbjct: 396 GDQDGDNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLDNVE 455
Query: 264 ICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSA 323
+ +++E+ N + + +D+ + ++L P + NP+MA AFL++
Sbjct: 456 VSGVTNTENPTNGY--DHKGTDSNGDLPGYSEQGSDTEIKL-PFVKSPNPVMALVAFLAS 512
Query: 324 LAGVEIAEVAARAAVTTLSDVDDRASKG------SLMRNTRQQEAGV----ASNGDATQN 373
G +A A +++ LS+ D S+G SL+ QQ+ G + NG Q
Sbjct: 513 AVGPRVAASCAHESLSVLSEDDRMKSEGMQGKEASLLDGENQQQDGAHKTSSQNGAEAQT 572
Query: 374 -------------ALARASVDASSLIEKEELDVEKAISGIVEVQMKEIQDKIIRFESLDL 420
L+ A+ A + EE ++++ + IV Q+K ++ K+ +F ++
Sbjct: 573 PLPQDKVMAAFRAGLSAAATKAKLFADHEEREIQRLSANIVNHQLKRMELKLKQFAEIET 632
Query: 421 QMEEEWKQLEQVK 433
+ +E +Q+E+ +
Sbjct: 633 LLMKECEQVEKTR 645
>sp|Q8W475|SWI3A_ARATH SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1
SV=1
Length = 512
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 237/495 (47%), Gaps = 91/495 (18%)
Query: 34 SSEPDVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENP 93
S+E ++ +P+ S WF +D I E E + EFF S ++ P+VY+ YRD I+ +RE+
Sbjct: 7 SAEIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDT 66
Query: 94 SRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKT------------------- 134
R++TFT VR+ LVGDV +++VF FLE WGLIN+ +S+K
Sbjct: 67 CRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSVDNAKIEQGTPAG 126
Query: 135 -----------------LKWEDKETKSSAASAESSSALKETSKR-----LCNGCKTLCTI 172
L E ET S S + K+ +C C C
Sbjct: 127 IRVTATPNSLRPITAPPLVEERVETGIKVPPLTSYSDVFSDLKKPDHVLVCAHCGERCDS 186
Query: 173 ACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFG 232
+ +K + +C +C+ GN+ ++ DF+ I A + WTE+E L LLE+++ G
Sbjct: 187 PFYQHNKGIVNICEKCFKNGNYGENNTADDFKL--IGNSAAAVWTEEEILLLLESVLKHG 244
Query: 233 DDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESD-------SEDVDNKFFSINNP-- 283
DDW ++Q VS KS DCI+ I+LPFG+ + S +ED + + +
Sbjct: 245 DDWELISQSVSTKSRLDCISKLIELPFGEFLMGSASGRLNPSILTEDENTEQVQTDGQEH 304
Query: 284 ---------SDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAA 334
D V+E E P+KR R+ +++ + +M Q A +++ G +A AA
Sbjct: 305 EETETREEKEDRVNEDE-----PPAKRKRVALISEGDSSLMKQVAAMASKVGPSVATAAA 359
Query: 335 RAAVTT----------LSDVDDRAS----KGSLMRNTRQQEAGVASNG-DATQNAL-ARA 378
+AA+ + D DD ++ + + ++T +E +G AL RA
Sbjct: 360 KAALAALCDEASCPKEIFDTDDYSNFTVDRANGEKDTDMEEQQEEKDGPQGLPVALRIRA 419
Query: 379 SVDASS---------LIEKEELDVEKAISGIVEVQMKEIQDKIIRFESLDLQMEEEWKQL 429
SV + L ++EE ++E+ + ++E Q+K++Q K+ + L+ M+EE K +
Sbjct: 420 SVATALGAAAAQAKILADQEEREMEQLAATVIEQQLKKLQSKLKFLDDLESIMDEEEKVI 479
Query: 430 EQVKNLLFVDQLSVL 444
E VK + +++SVL
Sbjct: 480 EGVKETIIQERVSVL 494
>sp|P32591|SWI3_YEAST SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1
Length = 825
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/459 (24%), Positives = 200/459 (43%), Gaps = 74/459 (16%)
Query: 30 ELPSSSEPDVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHY 89
E+P + E + +PSYS+WF+ + I EV+ LPEFF +R PSK P VY YR+ +V Y
Sbjct: 298 EIPQAHE---IVIPSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSY 354
Query: 90 RENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKWEDKETKSSAASA 149
R NP+ + T RR + GD ++ R+ FL WGLINY K L + +S S
Sbjct: 355 RLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLINYQVDSKLLPKNIEPPLTSQYST 414
Query: 150 --------------ESSSALKETS--KRLCNGCKTLCTIACFACD---KYDLTLCARCYV 190
+ S L + + K++ N + T+ + + KYD
Sbjct: 415 RHDAPRGLFPFESYKPSVQLPDMAKLKKMMNTSDSESTLYKYLKESKRKYDEITHPPSTT 474
Query: 191 ------------RGNHRVGVSSS---------------DFRRVEISEEARSDWTEKETLQ 223
+ N+ V S+S ++V+I E+ +W++++ +
Sbjct: 475 DDENGDKNDNGGKMNNEVSTSTSMTGDANLLEEGETSRPLKKVKILEQIDENWSKEDLQK 534
Query: 224 LLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNP 283
LL+ I FG DW KVA++V KS + CI F++LP +F+
Sbjct: 535 LLKGIQEFGADWYKVAKNVGNKSPEQCILRFLQLPIEDKFLY------------------ 576
Query: 284 SDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTLSD 343
D + +N P K P + + NP+++ AFL L + + + A+ +
Sbjct: 577 GDGNGKGDNDNGLGPLKYAPHLPFSKSENPVLSTIAFLVGLVNPKTVQSMTQRAIQSAES 636
Query: 344 VDDRASKGSLMRNTRQQEAGVASNGDATQNALARASVDASSLIEKEELDVEKAISGIVEV 403
+ + + S + + G ++ A++ + EE + + ++ +
Sbjct: 637 IKSQKEEISDQKPIEHIKEG-------SEIAISSLGYRSHIFATNEERQMNFLTNELIRL 689
Query: 404 QMKEIQDKIIRFESLDLQMEEEWKQLEQVKNLLFVDQLS 442
QM+++ K+ + L+ ME E K LE+ + L + +L+
Sbjct: 690 QMEKLDAKLNHLKKLEKFMELERKTLERQQENLLIQRLN 728
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3
Length = 503
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/457 (25%), Positives = 196/457 (42%), Gaps = 100/457 (21%)
Query: 40 VNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITF 99
+ VPSY+ WF I + E + PEFF+ +SP K P +Y+ YRD ++ YR P+ +T
Sbjct: 18 IIVPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTV 77
Query: 100 TDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKT------------------------- 134
T RR LVGDV +I RV FLE WGLINY +T
Sbjct: 78 TACRRNLVGDVCAIIRVHAFLEQWGLINYQIDPETRPAFRLPPISGHVQAISNTPIVTQE 137
Query: 135 -------------------LKWEDKETKSSAASAESSSALKETSK--------RLCNGCK 167
+K E+K S + E +S +E K ++C C
Sbjct: 138 MLAQHPPPSTVGGSSSQEFVKLEEKHYSPSLNAMEQTSPKEEDEKSDKVPRVDKVCFTCG 197
Query: 168 TLCTIACF---ACDKYDLTLCARCYVRGNHRVGVSSSD---FRRVEISEEARSDWTEKET 221
C+ + KYD +C CY +G +SSD ++ + + W+ +ET
Sbjct: 198 VNCSQTWYHNLKNKKYD--ICPNCYKQGRFSSSFNSSDFLCMDAIDFNHDEEKPWSNQET 255
Query: 222 LQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSIN 281
L LLEAI +GDDW ++A HV ++++ C+ HF+++P I
Sbjct: 256 LLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIP---------------------IE 294
Query: 282 NPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTL 341
+P + G SP K+ L P + NP+++ +L+++ + E +V
Sbjct: 295 DPYRQKLQ----GDFSPFKKGFL-PFDENENPVLSTLTYLASIVQQGMKERKQNESVKQ- 348
Query: 342 SDVDDRASKGSLMRNTRQQEAGVASNGDATQNALARASVDASSLIEKEELDVEKAISGIV 401
+ + S +N ++ A AL A+ A + E + + + ++
Sbjct: 349 ---GETSFGNSEFKNPLERVAYY---------ALKSAAQKAKLIAAFENRQLRRLVFSLI 396
Query: 402 EVQMKEIQDKIIRFESLDLQMEEEWKQLE-QVKNLLF 437
+ Q++++Q K+ E L+ E +L+ + KNLL
Sbjct: 397 QAQLEKLQLKMKVLEQLEKMCSLELSELDLRGKNLLL 433
>sp|Q8TAQ2|SMRC2_HUMAN SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1
SV=1
Length = 1214
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 157/338 (46%), Gaps = 43/338 (12%)
Query: 42 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTD 101
+PSY+ WF ++S+ E + LPEFF+ ++ SK P +Y YR+ ++ YR NP +T T
Sbjct: 426 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 485
Query: 102 VRRTLVGDVGSIRRVFDFLETWGLINYF--ASVKTLKWEDKETKSSAASAESSSALKETS 159
RR L GDV +I RV FLE WGLINY A + T A++ S L
Sbjct: 486 CRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQ 545
Query: 160 KRLCNGCKTLCTIACF-------ACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEA 212
+ + F D + L Y + N V S + + + A
Sbjct: 546 PKTPQQTSASQQMLNFPDKGKEKPTDMQNFGLRTDMYTKKN----VPS----KSKAAASA 597
Query: 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSED 272
+WTE+ETL LLEA+ + DDW KV++HV +++ +CI HF++LP ++ DSE
Sbjct: 598 TREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL---EDSE- 653
Query: 273 VDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEV 332
++G + + P + + NP+M+ AFL+++ +A
Sbjct: 654 ------------------ASLGPLA----YQPIPFSQSGNPVMSTVAFLASVVDPRVASA 691
Query: 333 AARAAVTTLSDVDDRASKGSLMRNTRQQEAGVASNGDA 370
AA++A+ S + + + + R+ E G A
Sbjct: 692 AAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKA 729
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 389 EELDVEKAISGIVEVQMKEIQDKIIRFESLDLQMEEEWKQLEQVKNLLFVDQLSVLFH 446
EE ++ ++ +VE QMK+++ K+ FE L+ M+ E + LE + L D+ + FH
Sbjct: 880 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQA--FH 935
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1
SV=2
Length = 1213
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 157/338 (46%), Gaps = 43/338 (12%)
Query: 42 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTD 101
+PSY+ WF ++S+ E + LPEFF+ ++ SK P +Y YR+ ++ YR NP +T T
Sbjct: 426 IPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 485
Query: 102 VRRTLVGDVGSIRRVFDFLETWGLINYF--ASVKTLKWEDKETKSSAASAESSSALKETS 159
RR L GDV +I RV FLE WGLINY A + T A++ S L
Sbjct: 486 CRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQ 545
Query: 160 KRLCNGCKTLCTIACF-------ACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEA 212
+ + F D + L Y + N V S + + + A
Sbjct: 546 PKPPQQSSASQQMLNFPEKGKEKPADMQNFGLRTDMYTKKN----VPS----KSKAAASA 597
Query: 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSED 272
+WTE+ETL LLEA+ + DDW KV++HV +++ +CI HF++LP ++ DSE
Sbjct: 598 TREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL---EDSE- 653
Query: 273 VDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEV 332
++G + + P + + NP+M+ AFL+++ +A
Sbjct: 654 ------------------ASLGPLA----YQPIPFSQSGNPVMSTVAFLASVVDPRVASA 691
Query: 333 AARAAVTTLSDVDDRASKGSLMRNTRQQEAGVASNGDA 370
AA++A+ S + + + + R+ E G A
Sbjct: 692 AAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKA 729
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 389 EELDVEKAISGIVEVQMKEIQDKIIRFESLDLQMEEEWKQLEQVKNLLFVDQLSVLFH 446
EE ++ ++ +VE QMK+++ K+ FE L+ M+ E + LE + L D+ + FH
Sbjct: 880 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQA--FH 935
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC8 PE=1 SV=1
Length = 557
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 125/285 (43%), Gaps = 60/285 (21%)
Query: 40 VNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITF 99
V +PS++ WF I E E + P+FF+ S K P+ Y+ R+ I+ YR +P +T
Sbjct: 80 VIIPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKDTRNFIINTYRLSPYEYLTI 139
Query: 100 TDVRRTLVGDVGSIRRVFDFLETWGLINY------------------------------- 128
T VRR + DV SI ++ FLE WGLINY
Sbjct: 140 TAVRRNVAMDVASIVKIHAFLEKWGLINYQIDPRTKPSLIGPSFTGHFQVVLDTPQGLKP 199
Query: 129 FASVKTLKWE-----------DKE-------TKSSAASAESSSALKETSKR--------L 162
F +K E KE K+ SA+ +AL++ S+ +
Sbjct: 200 FLPENVIKQEVEGGDGAEPQVKKEFPVNLTIKKNVYDSAQDFNALQDESRNSRQIHKVYI 259
Query: 163 CNGCKT-LCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEIS-EEARSDWTEKE 220
C+ C + D LC+RC+ G+ SSDF R+E + + +W+++E
Sbjct: 260 CHTCGNESINVRYHNLRARDTNLCSRCFQEGHFGANFQSSDFIRLENNGNSVKKNWSDQE 319
Query: 221 TLQLLEAIMHFGDDWRKVAQHVSG-KSEKDCITHFIKLPFGQEFI 264
L LLE I + D W K+A HV G K +DCI F+ LP +I
Sbjct: 320 MLLLLEGIEMYEDQWEKIADHVGGHKRVEDCIEKFLSLPIEDNYI 364
>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1
SV=2
Length = 1104
Score = 115 bits (288), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 161/354 (45%), Gaps = 33/354 (9%)
Query: 42 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTD 101
+PSY+ WF ++ I E + LPEFF+ ++ SK P +Y YR+ ++ YR NP +T T
Sbjct: 450 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 509
Query: 102 VRRTLVGDVGSIRRVFDFLETWGLINYFASVKT--LKWEDKETKSSAASAESSSALKETS 159
RR L GDV ++ RV FLE WGL+NY ++ + T A++ S L
Sbjct: 510 CRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLH 569
Query: 160 KRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEK 219
R + F + + + + R + S A +WTE+
Sbjct: 570 LR-SPQVPAAQQMLNFPEKNKEKPIDLQNF---GLRTDIYSKKTLAKSKGASAGREWTEQ 625
Query: 220 ETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFS 279
ETL LLEA+ + DDW KV++HV +++ +CI HF++LP ++
Sbjct: 626 ETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL--------------- 670
Query: 280 INNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVT 339
EN A+ + P + + NP+M+ AFL+++ +A AA+AA+
Sbjct: 671 -----------ENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALE 719
Query: 340 TLSDVDDRASKGSLMRNTRQ-QEAGVASNGDATQNALARASVDASSLIEKEELD 392
S V + + + ++ QEA AS L + + + E E+L+
Sbjct: 720 EFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLE 773
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 389 EELDVEKAISGIVEVQMKEIQDKIIRFESLDLQMEEEWKQLEQVKNLLFVDQLSVLFH 446
EE ++ ++ +VE QMK+++ K+ FE L+ M+ E + LEQ + L ++ + FH
Sbjct: 887 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQN--FH 942
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1
SV=3
Length = 1105
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 132/285 (46%), Gaps = 32/285 (11%)
Query: 42 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTD 101
+PSY+ WF ++ I E + LPEFF+ ++ SK P +Y YR+ ++ YR NP +T T
Sbjct: 451 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTA 510
Query: 102 VRRTLVGDVGSIRRVFDFLETWGLINYFASVKT--LKWEDKETKSSAASAESSSALKETS 159
RR L GDV ++ RV FLE WGL+NY ++ + T A++ S L
Sbjct: 511 CRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLH 570
Query: 160 KRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEK 219
R + F + + + + R + S A +WTE+
Sbjct: 571 LR-SPQVPAAQQMLNFPEKNKEKPVDLQNF---GLRTDIYSKKTLAKSKGASAGREWTEQ 626
Query: 220 ETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFS 279
ETL LLEA+ + DDW KV++HV +++ +CI HF++LP ++
Sbjct: 627 ETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL--------------- 671
Query: 280 INNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSAL 324
EN A+ + P + + NP+M+ AFL+++
Sbjct: 672 -----------ENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASV 705
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 389 EELDVEKAISGIVEVQMKEIQDKIIRFESLDLQMEEEWKQLEQVKNLLFVDQLSVLFH 446
EE ++ ++ +VE QMK+++ K+ FE L+ M+ E + LEQ + L ++ + FH
Sbjct: 888 EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQN--FH 943
>sp|O13788|SSR1_SCHPO SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1
Length = 527
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 57/89 (64%)
Query: 40 VNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITF 99
V VP +++WF F + E E K PEFFD ++ SK P VY+ YRD ++ +R N +TF
Sbjct: 52 VEVPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDFMISTFRLNSKVYLTF 111
Query: 100 TDVRRTLVGDVGSIRRVFDFLETWGLINY 128
T RR L GDV ++ RV FLE WGLINY
Sbjct: 112 TACRRNLAGDVCAVLRVHRFLEQWGLINY 140
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 117/279 (41%), Gaps = 47/279 (16%)
Query: 179 KYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSD--WTEKETLQLLEAIMHFGDDWR 236
KY++ C CY + + +D++ V I + D WT +E + L E + + DDW
Sbjct: 256 KYNV--CISCYQQNRFPSPTTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSDDWA 313
Query: 237 KVAQHVSGKSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGAT 296
KVA HV+ KS ++CI F+ LP D F ++
Sbjct: 314 KVASHVNTKSVEECILKFLNLPSS-------------DKALFKMD--------------- 345
Query: 297 SPSKRMRLTPLADA---SNPIMAQAAFLSALAGVEIAEVAARAAVTTLSDVDDRASKGSL 353
++ P+ D+ NPI++ +FL+ + + + + + D+ S+
Sbjct: 346 ----KVHTNPVVDSLQGKNPILSVVSFLAKM----VPPSSFTQKSSAKEEESDKVKGESV 397
Query: 354 MRNTRQQEAGVASNGDATQNALARASVDASSLIEKEELDVEKAISGIVEVQMKEIQDKII 413
+ V NG + +++ + + + + EE + I V VQ+K I+ K+
Sbjct: 398 YPKPESESYDVEMNGKSLEDSDSLSEL----YLTNEEKKMASIIKDSVNVQIKLIESKLS 453
Query: 414 RFESLDLQMEEEWKQLEQVKNLLFVDQLSVLFHKSNARK 452
F+ LD + + ++L+ + ++L + NARK
Sbjct: 454 HFDYLDQHIRLKSQELDAFAQATYREKLYMKRECQNARK 492
>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1
Length = 1620
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 114/237 (48%), Gaps = 38/237 (16%)
Query: 140 KETKSSAASAESSSALKETSKRL--CNGCKTLCTIACF-------ACDK-------YDLT 183
KE K + ++ L + K L C CK C+ + A D Y +
Sbjct: 838 KEPKKLTTTKSANDQLIKKKKPLFECKKCKADCSNVRYQLVNNSTALDGNILPEYFYPMI 897
Query: 184 LCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVS 243
+C C+ GN+ + SS F+R+E + WT+ ETL LLE I F D+W++++ ++
Sbjct: 898 ICVNCFSSGNYENFIQSSSFQRIEQHQPEEFGWTDIETLLLLEGIEIFRDNWQEISDYIG 957
Query: 244 G-KSEKDCITHFIKLPFGQEFICKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRM 302
G K+ + C+THFI+LP EF+ ++ S F P ++S+ E + + +P
Sbjct: 958 GSKTPEQCLTHFIRLPIEDEFLERKISS------F-----PVGSLSKKE-IDSNNP---- 1001
Query: 303 RLTPLADASNPIMAQAAFLSALAGVEIAEVAARAAVTTLSDVDD----RASKGSLMR 355
+ +NPIM+ AF S+ + + +A++AA L ++D + SK L R
Sbjct: 1002 -FSITYGVNNPIMSLVAFFSSYSQPPLGLLASKAAKVILEILNDPKYQQPSKEELER 1057
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 74 NPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVG--------DVGSIRRVFDFLETWGL 125
N +Y+ YRD ++ Y++NP + ++ TDV+ + ++ SI ++FDFLE W L
Sbjct: 350 NKELYKIYRDYMITSYQKNPYQYLSVTDVKNHFINQNKKTFKVNIRSIIKIFDFLEYWDL 409
Query: 126 INYFAS 131
IN F +
Sbjct: 410 INCFVN 415
>sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1
SV=3
Length = 985
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 147/325 (45%), Gaps = 55/325 (16%)
Query: 42 VPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTD 101
VP++ WFS++ I E + LP FF+ + + VYR R+ I+ + NP+ +I D
Sbjct: 147 VPNHCGWFSWEKIHPLEERSLPSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKD 206
Query: 102 VRRTLVGDVGSIRRVFDFLETWGLINY--FASVKTLK-------WEDKET---------- 142
+ VGD + + V +FL+ WGLIN+ F T DKE+
Sbjct: 207 LTELEVGDSEAKQEVMEFLDYWGLINFHPFPPTDTGSTASDHDDLGDKESLLNSLYRFQV 266
Query: 143 -----------KSSAASAESS---------SALKETSKRLCNGCKTLCTIAC----FACD 178
+ +A + S LK+ + C + C+ C + C
Sbjct: 267 DEACPPLVHKPRFTAQATPSGLFPDPMAADELLKQEGPAVEYHCNS-CSADCSRKRYHCP 325
Query: 179 KY-DLTLCARCYVRGNHRVGVSSSDFRRVEISEE---ARSDWTEKETLQLLEAIMHFGDD 234
K D LC C+ G +SSSDF +E +E WT++ETL LLEA+ F ++
Sbjct: 326 KQADFDLCTECFNSGKFSSDMSSSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKEN 385
Query: 235 WRKVAQHVSGKSEKDCITHFIKLPFGQEFI----CKESDSEDVDNKFFSINNPS---DAV 287
W ++A+HV+ K++ C+ HF+++P F+ K+ S+D + S ++ S DA
Sbjct: 386 WNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSVLKDAP 445
Query: 288 SESENVGATSPSKRMRLTPLADASN 312
E+EN + M+ P + N
Sbjct: 446 EEAENKKRVDEDETMKEVPEPEDGN 470
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 307 LADASNPIMAQAAFLSALAGVEIAEVAARAAVTTL 341
AD NP+M AAFL LAG ++A +ARA++ +L
Sbjct: 540 FADLGNPVMGLAAFLVRLAGSDVATASARASIKSL 574
>sp|Q5ZJF3|TAD2A_CHICK Transcriptional adapter 2-alpha OS=Gallus gallus GN=TADA2A PE=2
SV=1
Length = 446
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 163 CNGCKTLCT---IACFACDKYDLTLCARCYVRG--------NHRVGVSSSDFRRVEISEE 211
C GC + T + C C LC +C+ RG +H + +SDF ++
Sbjct: 17 CRGCSSYLTEPYVKCAECGPPPFLLCLQCFTRGFEYKKHQSDHTYEIMTSDFPVLD---- 72
Query: 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256
+WT +E + LLEA+M G +W+ VA + KS+++C H++K
Sbjct: 73 --PNWTAQEEMALLEAVMDCGFGNWQDVANQMCTKSKEECEKHYMK 116
>sp|Q8CHV6|TAD2A_MOUSE Transcriptional adapter 2-alpha OS=Mus musculus GN=Tada2a PE=1 SV=1
Length = 443
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 163 CNGCKTLCT---IACFACDKYDLTLCARCYVRG--------NHRVGVSSSDFRRVEISEE 211
C GC + T I C C LC +C+ RG +H + +SDF ++ S
Sbjct: 17 CRGCSSYLTEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHTYEIMTSDFPVLDPS-- 74
Query: 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256
WT +E + LLEA+M G +W+ VA + K++++C H++K
Sbjct: 75 ----WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 116
>sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo sapiens GN=TADA2A PE=1 SV=3
Length = 443
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 163 CNGCKTLCT---IACFACDKYDLTLCARCYVRG--------NHRVGVSSSDFRRVEISEE 211
C GC + I C C LC +C+ RG +H + +SDF ++ S
Sbjct: 17 CRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHTYEIMTSDFPVLDPS-- 74
Query: 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256
WT +E + LLEA+M G +W+ VA + K++++C H++K
Sbjct: 75 ----WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 116
>sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos taurus GN=TADA2A PE=2 SV=1
Length = 443
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 163 CNGCKTLCT---IACFACDKYDLTLCARCYVRG--------NHRVGVSSSDFRRVEISEE 211
C GC + I C C LC +C+ RG +H + +SDF ++ S
Sbjct: 17 CRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHTYEIMTSDFPVLDPS-- 74
Query: 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256
WT +E + LLEA+M G +W+ VA + K++++C H++K
Sbjct: 75 ----WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 116
>sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus norvegicus GN=Tada2a PE=2
SV=1
Length = 443
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 163 CNGCKTLCT---IACFACDKYDLTLCARCYVRG--------NHRVGVSSSDFRRVEISEE 211
C GC + I C C LC +C+ RG +H + +SDF ++ S
Sbjct: 17 CRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHTYEIMTSDFPVLDPS-- 74
Query: 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256
WT +E + LLEA+M G +W+ VA + K++++C H++K
Sbjct: 75 ----WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 116
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1
SV=1
Length = 548
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 163 CNGC-KTLCTIACFACDK-YDLTLCARCYVRGNHRVGVSSSDFRRVEISEE---ARSDWT 217
CN C K L + F C D LC C+ G +S RV + SDW
Sbjct: 53 CNYCDKDLSGLVRFKCAVCMDFDLCVECFSVGVELNRHKNSHPYRVMDNLSFSLVTSDWN 112
Query: 218 EKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHF 254
E + LLEAI +G +W++VA HV K+ +CI HF
Sbjct: 113 ADEEILLLEAIATYGFGNWKEVADHVGSKTTTECIKHF 150
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 49 FSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTL-- 106
++I+E E + + EFF+ R PSK P Y R+ I+ +R + + + T VR L
Sbjct: 322 LDLNTITEEEKQAISEFFEGR-PSKTPERYLKIRNYILDQWRRSKPKYLNKTSVRPGLKN 380
Query: 107 VGDVGSIRRVFDFLETWGLINY 128
GDV I R+ +LE G IN+
Sbjct: 381 CGDVNCIGRIHTYLELIGAINF 402
>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ADA2 PE=1 SV=1
Length = 434
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 16/110 (14%)
Query: 158 TSKRLCNGCKTLCT----IACFACDKYDLTLCARCYVRGN----HRVGVSSSDFRRVEIS 209
++K C+ C CT ++C C +YDL C C+ +G+ HR D+R +E +
Sbjct: 2 SNKFHCDVCSADCTNRVRVSCAICPEYDL--CVPCFSQGSYTGKHR---PYHDYRIIETN 56
Query: 210 EEAR--SDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256
DW E LQL++ G +W+ +A H+ + +++ H++K
Sbjct: 57 SYPILCPDWGADEELQLIKGAQTLGLGNWQDIADHIGSRGKEEVKEHYLK 106
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 22 LAPPPVKPELPSSSEPDVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYY 81
L PP + + E + + P I E E + +PEFF+ R +K P Y
Sbjct: 356 LFHPPCQVDEDHQEEAEALKPPDQEVEIDRSIILEEEKQAIPEFFEGRQ-AKTPERYLKI 414
Query: 82 RDSIVKHYRENPSRKITFTDVRRTL--VGDVGSIRRVFDFLETWGLINY 128
R+ I+ + + + T VR L GDV I R+ +LE G IN+
Sbjct: 415 RNYILDQWERCKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAINF 463
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 39/278 (14%)
Query: 155 LKETSKRLCNGCKTLCTIACFACDK-YDLTLCARCYVRG----NHRV--GVSSSDFRRVE 207
+ E K+ C C + F C + D+ LC C+ G +HR G D R
Sbjct: 1 MAELGKKYCVYCLAEVSPLRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQLVDGGRFT 60
Query: 208 I-SEEARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSG-KSEKDCITHFIKLPFGQEFI 264
+ EA WT +E LL+AI FG +W +A HV ++ ++ + H++ + + +
Sbjct: 61 LWGPEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSM-YIHGNL 119
Query: 265 CKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSAL 324
K + + N+ PS G SPS L PL D S Q ++
Sbjct: 120 GKACIPDTIPNRVTDHTCPSG--------GPLSPSLTTPLPPL-DISVAEQQQLGYMPLR 170
Query: 325 AGVEIA-EVAARAAVTTLS---DVDD------RASKGSLMRNTRQQEAGVASNGDATQNA 374
EI + A ++ LS D DD RA +R ++++ +
Sbjct: 171 DDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQ---------RRKN 221
Query: 375 LARASVDASSLIEKEELDVEKAISGIVEVQMKEIQDKI 412
+AR + + K++ + EKA+ + + KE++ K+
Sbjct: 222 IARDYNLVPAFLGKDKKEKEKALKRKITKEEKELRLKL 259
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 114/278 (41%), Gaps = 39/278 (14%)
Query: 155 LKETSKRLCNGCKTLCTIACFACDK-YDLTLCARCYVRG----NHRV--GVSSSDFRRVE 207
+ E K+ C C + F C + D+ LC C+ G +HR G D R
Sbjct: 1 MAELGKKYCVYCLAEVSPLRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQLVDGGRFT 60
Query: 208 I-SEEARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSG-KSEKDCITHFIKLPFGQEFI 264
+ EA WT +E LL+AI FG +W +A HV ++ ++ + H++ + + +
Sbjct: 61 LWGPEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSM-YIHGNL 119
Query: 265 CKESDSEDVDNKFFSINNPSDAVSESENVGATSPSKRMRLTPLADASNPIMAQAAFLSAL 324
K + + N+ PS G SPS L PL D S Q ++
Sbjct: 120 GKACIPDTIPNRVTDHTCPSG--------GPLSPSLTTPLPPL-DISVAEQQQLGYMPLR 170
Query: 325 AGVEIA-EVAARAAVTTLS---DVDD------RASKGSLMRNTRQQEAGVASNGDATQNA 374
EI + A ++ LS D DD RA +R ++++ +
Sbjct: 171 DDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQ---------RRKN 221
Query: 375 LARASVDASSLIEKEELDVEKAISGIVEVQMKEIQDKI 412
+AR + + K++ + EKA+ + + KE++ K+
Sbjct: 222 IARDYNLVPAFLGKDKKEKEKALKRKITKEEKELRLKL 259
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 54 ISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTL--VGDVG 111
I E E + +PEFF+ R +K P Y R+ I+ + + + T VR L GDV
Sbjct: 377 IQEEEKQAIPEFFEGRQ-TKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVN 435
Query: 112 SIRRVFDFLETWGLINY 128
I R+ +LE G IN+
Sbjct: 436 CIGRIHTYLELIGAINF 452
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 163 CNGCKTLCT----IACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEAR---SD 215
CN C + I C C +DL C C+ G S+ RV + D
Sbjct: 53 CNYCNKDISGKIRIKCSKCPDFDL--CVECFSVGAEVTPHRSNHPYRVMDNLSFPLICPD 110
Query: 216 WTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHF 254
W E + LLE I +G +W +VA+HV K++ CI H+
Sbjct: 111 WNADEEILLLEGIEMYGLGNWAEVAEHVGTKTKAQCIDHY 150
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 155 LKETSKRLCNGCKTLCT---IACFACDKYDLTLCARCYVRG----NHRV--GVSSSDFRR 205
+ + SK+ C C T + C C D+ LC C+ G NHR G D R
Sbjct: 1 MADLSKKYCVYCLADVTSLRLRCTECQ--DIELCTDCFSAGAEIGNHRRWHGYQLVDGGR 58
Query: 206 VEI-SEEARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSG-KSEKDCITHFIKL 257
+ EA WT +E LL+AI FG +W +A HV ++ + + H++ +
Sbjct: 59 FTLWGPEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPTEVMEHYVTM 113
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 54 ISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTL--VGDVG 111
I E E + +PEFF+ R +K P Y R+ I+ + + + T VR L GDV
Sbjct: 386 IQEEEKQAIPEFFEGRQ-AKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVN 444
Query: 112 SIRRVFDFLETWGLINY 128
I R+ +LE G IN+
Sbjct: 445 CIGRIHTYLELIGAINF 461
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 33 SSSEPDVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYREN 92
S E D + P + I + E + +PEFF+ R +K P Y R+ I+ +
Sbjct: 337 SQDEDDEIKPPDQELEIDRNFILDEEKQAIPEFFEGRQ-AKTPDRYLRIRNYILDQWENC 395
Query: 93 PSRKITFTDVRRTL--VGDVGSIRRVFDFLETWGLINY 128
+ + T VR L GDV I R+ +LE G IN+
Sbjct: 396 KPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAINF 433
>sp|Q6P2Y3|DNJC2_XENTR DnaJ homolog subfamily C member 2 OS=Xenopus tropicalis GN=dnajc2
PE=2 SV=2
Length = 620
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 126 INYFASVKTLKWEDKETKSSAASAESSSALKETSKRLCNGCKTLCTIACFACDKYDLTLC 185
+N F + +WE ++ + S S +K TSK + N K+L + D D+
Sbjct: 464 VNLFPAGTNARWE---VIANYMNLHSISGIKRTSKDVINKAKSLQKLDPQQKD--DINKK 518
Query: 186 ARCYVRGNHRVGVSSSD----FRRVEISEEARSDWTEKETLQLLEAIMHFG----DDWRK 237
A + HRV S D R E S WT +E L +A+ + + W K
Sbjct: 519 AFDKFKKEHRVVPQSVDNAVPSERFEGPAADMSPWTTEEQKLLEQALKTYPVNTPERWEK 578
Query: 238 VAQHVSGKSEKDCITHFIKL 257
+A+ V G+S+KDC+ + +L
Sbjct: 579 IAEAVPGRSKKDCMKRYKEL 598
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 172 IACFACDKYDLTLCARCYVRG--------NHRVGVSSSDFRRVEISEEARSDWTEKETLQ 223
+ C C+ +DL C +C+ G NH + + + + WT +E ++
Sbjct: 25 VHCAECENFDL--CLQCFAAGAEIGAHQNNHSYQFMDTGTSILSVFR-GKGAWTAREEIR 81
Query: 224 LLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFI 255
LL+AI +G +W +++H+ KS +D ++
Sbjct: 82 LLDAIEQYGFGNWEDISKHIETKSAEDAKEEYV 114
>sp|Q9XWP6|LSD1_CAEEL Probable lysine-specific histone demethylase 1 OS=Caenorhabditis
elegans GN=spr-5 PE=1 SV=1
Length = 770
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 51 FDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLV--- 107
FD ++ E+ F PE ++ ++ + V+ R+S + ++ NP ++ T DVR +
Sbjct: 39 FDRPTDHELAFFPELWEHKTAVE---VFLLLRNSTLATWQYNPLKECTALDVRNNVFPPF 95
Query: 108 -GDVGSIRRVFDFLETWGLINYFASVKTLK 136
D+ I+ + +L GLIN+ V++ K
Sbjct: 96 NSDLDLIQNIVHYLSRHGLINFGRYVRSTK 125
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1
SV=1
Length = 487
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 215 DWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKLPFGQEFI 264
DW+ + + LLE + +G +W +VA+HV KS++ C+ H+ + F
Sbjct: 104 DWSADDEMLLLEGLEIYGLGNWAEVAEHVGTKSKEQCLEHYRNIYLNSPFF 154
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 38.9 bits (89), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 43 PSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDV 102
P+ R+ + I++ E+ E+F + SK P Y RD I++ + ++ T
Sbjct: 528 PTKERYLDLNIITQEEMMGCKEYFTGQI-SKTPDRYIKIRDKIIRQWDSFKPNYLSKTFS 586
Query: 103 RRTLV---GDVGSIRRVFDFLETWGLINYFA 130
R + D+ SI RV FLE+ G+IN+ A
Sbjct: 587 RNQIKDCGSDINSIGRVHQFLESIGVINFNA 617
>sp|B6MUN4|MYSM1_BRAFL Histone H2A deubiquitinase MYSM1 OS=Branchiostoma floridae GN=MYSM1
PE=3 SV=1
Length = 809
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 54 ISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTL--VGDVG 111
I+E E + EFFD R +K P Y R+ ++ + + T R L GDV
Sbjct: 424 ITEEEKEVHKEFFDGRQ-TKTPERYLKIRNHLLDCWERTKPEYLRKTVARAGLRNCGDVN 482
Query: 112 SIRRVFDFLETWGLINY 128
I R+ +LE G IN+
Sbjct: 483 CIGRIHGYLERIGAINF 499
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257
R WTE+E + +EA+ +G W+K+ +HV+ K+ +H K
Sbjct: 24 RERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKF 68
>sp|P22035|BAS1_YEAST Myb-like DNA-binding protein BAS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BAS1 PE=1 SV=1
Length = 811
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257
+ WT++E QLL+A G W ++ + G++E C +I++
Sbjct: 116 KGKWTQEEDEQLLKAYEEHGPHWLSISMDIPGRTEDQCAKRYIEV 160
>sp|Q9VW97|LSDA_DROME Possible lysine-specific histone demethylase 1 OS=Drosophila
melanogaster GN=Su(var)3-3 PE=1 SV=1
Length = 890
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 49 FSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVG 108
F+ ++ E P+ SRS RV+ R+S++ + +NP +++F + L
Sbjct: 169 LPFNKMTPNEEACFPDI--SRSGILGHRVFLNIRNSLLHMWVDNPKIQLSFEIALKNLPP 226
Query: 109 DVGS----IRRVFDFLETWGLINYFASVKTLK 136
S +RRV FLE G IN F K LK
Sbjct: 227 PFDSEPSLVRRVHSFLERHGFIN-FGIFKRLK 257
>sp|Q8BP86|SNPC4_MOUSE snRNA-activating protein complex subunit 4 OS=Mus musculus
GN=Snapc4 PE=2 SV=2
Length = 1333
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256
R W +E +LL+A+ +G DW K+ + V G+S+ C +I+
Sbjct: 401 RGFWAPEEDAKLLQAVAKYGAQDWFKIREEVPGRSDAQCRDRYIR 445
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKS 246
++R +WTE+E + LEA+ F DW+K+ V K+
Sbjct: 59 KSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKT 94
>sp|O60341|KDM1A_HUMAN Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A
PE=1 SV=2
Length = 852
Score = 35.8 bits (81), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 44 SYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVR 103
++ D ++ E P+ P + +V+ + R+ ++ + +NP ++TF
Sbjct: 178 AFQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATL 235
Query: 104 RTLVGDVGS----IRRVFDFLETWGLINY 128
+ L S + RV +LE GLIN+
Sbjct: 236 QQLEAPYNSDTVLVHRVHSYLERHGLINF 264
>sp|Q6ZQ88|KDM1A_MOUSE Lysine-specific histone demethylase 1A OS=Mus musculus GN=Kdm1a
PE=1 SV=2
Length = 853
Score = 35.8 bits (81), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 52 DSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVG 111
D ++ E P+ P + +V+ + R+ ++ + +NP ++TF + L
Sbjct: 187 DRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYN 244
Query: 112 S----IRRVFDFLETWGLINY 128
S + RV +LE GLIN+
Sbjct: 245 SDTVLVHRVHSYLERHGLINF 265
>sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subunit 4 OS=Homo sapiens
GN=SNAPC4 PE=1 SV=1
Length = 1469
Score = 35.4 bits (80), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 216 WTEKETLQLLEAIMHFGD-DWRKVAQHVSGKSEKDCITHFIK 256
W +E +LL+A+ +G+ DW K+ + V G+S+ C +++
Sbjct: 404 WAPEEDAKLLQAVAKYGEQDWFKIREEVPGRSDAQCRDRYLR 445
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 35.4 bits (80), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 204 RRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITH----FIKL 257
R+ + R +WT++E + LEA+ F DW+K+ V K+ +H FIK+
Sbjct: 32 RKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFIKV 89
>sp|Q03237|MYBB_CHICK Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1
Length = 686
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 216 WTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257
WT++E QL + H+G +DW+ +A H +S++ C ++++
Sbjct: 34 WTQEEDEQLKMLVRHYGQNDWKFLASHFPNRSDQQCQYRWLRV 76
>sp|Q21V39|PYRG_RHOFD CTP synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
BAA-621 / T118) GN=pyrG PE=3 SV=1
Length = 555
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 192 GNHRVGVSSSDFRRVEISEEARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCI 251
G R+G SSD + ++ + D + EA +HF D RK +S ++++ +
Sbjct: 441 GTMRLGAQSSDVVKGTLAHKIYGDVVTERHRHRYEANVHFLDTLRKAGLVISAFTQREHL 500
Query: 252 THFIKLP 258
T ++LP
Sbjct: 501 TEIVELP 507
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITH----FIKL 257
R WTE E + LEA+ +G W+++ +H+ K+ +H F KL
Sbjct: 24 RERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKL 72
>sp|Q5GU80|UPPP_XANOR Undecaprenyl-diphosphatase OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=uppP PE=3 SV=2
Length = 265
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKS-EKDCITHFIKLPFG 260
++ W ETLQ + + G W VA+HV+GK E+D +T + + G
Sbjct: 97 KAGWQLPETLQPVAWALLIGGVWMLVAEHVAGKLPERDVVTWKVAIAVG 145
>sp|B2SHN5|UPPP_XANOP Undecaprenyl-diphosphatase OS=Xanthomonas oryzae pv. oryzae (strain
PXO99A) GN=uppP PE=3 SV=1
Length = 265
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKS-EKDCITHFIKLPFG 260
++ W ETLQ + + G W VA+HV+GK E+D +T + + G
Sbjct: 97 KAGWQLPETLQPVAWALLIGGVWMLVAEHVAGKLPERDVVTWKVAIAVG 145
>sp|Q2NXJ3|UPPP_XANOM Undecaprenyl-diphosphatase OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=uppP PE=3 SV=1
Length = 265
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKS-EKDCITHFIKLPFG 260
++ W ETLQ + + G W VA+HV+GK E+D +T + + G
Sbjct: 97 KAGWQLPETLQPVAWALLIGGVWMLVAEHVAGKLPERDVVTWKVAIAVG 145
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,476,921
Number of Sequences: 539616
Number of extensions: 6891155
Number of successful extensions: 25871
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 25620
Number of HSP's gapped (non-prelim): 287
length of query: 466
length of database: 191,569,459
effective HSP length: 121
effective length of query: 345
effective length of database: 126,275,923
effective search space: 43565193435
effective search space used: 43565193435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)