Query 012334
Match_columns 466
No_of_seqs 243 out of 756
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 2E-41 6.8E-46 289.8 10.6 93 39-131 10-102 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 1.1E-40 3.8E-45 288.9 8.0 93 38-131 11-105 (111)
3 2yus_A SWI/SNF-related matrix- 99.7 2.7E-16 9.1E-21 128.5 9.1 54 211-264 16-69 (79)
4 2elk_A SPCC24B10.08C protein; 99.4 2.2E-13 7.5E-18 104.7 6.4 49 212-260 8-58 (58)
5 1x41_A Transcriptional adaptor 99.3 2.1E-12 7.3E-17 99.7 6.2 50 212-261 7-57 (60)
6 2cqr_A RSGI RUH-043, DNAJ homo 99.2 6.9E-12 2.4E-16 100.9 5.0 63 200-263 5-71 (73)
7 1gvd_A MYB proto-oncogene prot 99.1 1.3E-10 4.6E-15 86.8 5.7 45 213-257 3-48 (52)
8 1guu_A C-MYB, MYB proto-oncoge 99.1 1.4E-10 4.9E-15 86.6 5.5 44 213-256 3-47 (52)
9 1wgx_A KIAA1903 protein; MYB D 99.0 2.1E-10 7E-15 92.2 5.8 46 213-258 8-57 (73)
10 1w0t_A Telomeric repeat bindin 99.0 2.7E-10 9.4E-15 85.6 5.8 45 213-257 2-49 (53)
11 2d9a_A B-MYB, MYB-related prot 99.0 3.3E-10 1.1E-14 87.1 6.3 45 212-256 7-52 (60)
12 2yum_A ZZZ3 protein, zinc fing 99.0 1.7E-10 5.8E-15 92.6 4.2 45 212-256 7-57 (75)
13 2cu7_A KIAA1915 protein; nucle 99.0 3.7E-10 1.3E-14 90.1 5.7 46 212-257 8-53 (72)
14 2dim_A Cell division cycle 5-l 99.0 6.9E-10 2.4E-14 88.0 6.4 44 213-256 9-53 (70)
15 3sjm_A Telomeric repeat-bindin 98.9 9.2E-10 3.1E-14 86.2 5.8 45 213-257 11-58 (64)
16 1ity_A TRF1; helix-turn-helix, 98.9 1.5E-09 5.2E-14 85.8 5.8 45 212-256 9-56 (69)
17 2eqr_A N-COR1, N-COR, nuclear 98.8 5.1E-09 1.7E-13 81.1 6.4 45 212-256 11-55 (61)
18 2din_A Cell division cycle 5-l 98.8 3.8E-09 1.3E-13 82.7 5.6 45 212-257 8-52 (66)
19 2cjj_A Radialis; plant develop 98.8 4.3E-09 1.5E-13 88.3 5.0 46 212-257 7-56 (93)
20 2ltp_A Nuclear receptor corepr 98.2 8.9E-10 3.1E-14 91.6 0.0 46 212-257 15-60 (89)
21 2llk_A Cyclin-D-binding MYB-li 98.7 1.6E-08 5.4E-13 81.3 6.1 45 212-257 22-66 (73)
22 2k9n_A MYB24; R2R3 domain, DNA 98.7 1.2E-08 4.2E-13 87.0 5.7 43 214-256 2-45 (107)
23 2iw5_B Protein corest, REST co 98.7 1.8E-08 6.2E-13 96.4 6.8 46 211-256 131-176 (235)
24 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.9E-08 6.5E-13 85.2 6.0 46 212-257 3-49 (105)
25 3osg_A MYB21; transcription-DN 98.6 3E-08 1E-12 87.0 6.0 45 212-256 10-54 (126)
26 2k9n_A MYB24; R2R3 domain, DNA 98.6 3.3E-08 1.1E-12 84.4 5.7 45 213-257 53-97 (107)
27 1gv2_A C-MYB, MYB proto-oncoge 98.6 3E-08 1E-12 84.0 5.1 45 213-257 56-100 (105)
28 1h8a_C AMV V-MYB, MYB transfor 98.6 6E-08 2.1E-12 85.1 6.8 45 212-256 26-71 (128)
29 2ckx_A NGTRF1, telomere bindin 98.6 4.7E-08 1.6E-12 80.4 5.6 44 214-257 1-49 (83)
30 3zqc_A MYB3; transcription-DNA 98.6 2.3E-08 7.8E-13 88.3 3.8 44 213-256 2-46 (131)
31 3osg_A MYB21; transcription-DN 98.6 3.7E-08 1.3E-12 86.5 5.1 44 213-256 62-105 (126)
32 1h8a_C AMV V-MYB, MYB transfor 98.5 8.2E-08 2.8E-12 84.3 6.1 45 213-257 79-123 (128)
33 4gut_A Lysine-specific histone 98.5 1.6E-07 5.6E-12 104.8 9.5 90 36-131 213-321 (776)
34 2z3y_A Lysine-specific histone 98.5 6.4E-08 2.2E-12 105.7 6.0 85 45-131 8-96 (662)
35 3zqc_A MYB3; transcription-DNA 98.5 1E-07 3.5E-12 84.1 5.3 45 213-257 54-98 (131)
36 2yqk_A Arginine-glutamic acid 98.5 2.7E-07 9.2E-12 71.9 6.6 44 212-255 8-52 (63)
37 2xag_B REST corepressor 1; ami 98.4 2.7E-07 9.2E-12 97.3 6.8 45 212-256 379-423 (482)
38 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.6E-07 1.2E-11 73.1 4.9 48 213-262 8-59 (72)
39 2roh_A RTBP1, telomere binding 98.3 5.4E-07 1.9E-11 79.0 5.8 46 212-257 30-80 (122)
40 1h89_C C-MYB, MYB proto-oncoge 98.3 5.3E-07 1.8E-11 81.8 5.9 45 213-257 110-154 (159)
41 2aje_A Telomere repeat-binding 98.3 5E-07 1.7E-11 77.4 4.8 46 212-257 12-62 (105)
42 1h89_C C-MYB, MYB proto-oncoge 98.3 7E-07 2.4E-11 81.0 6.1 46 212-257 57-103 (159)
43 2crg_A Metastasis associated p 98.3 8.6E-07 2.9E-11 70.5 5.8 45 212-256 7-52 (70)
44 2juh_A Telomere binding protei 98.2 8E-07 2.7E-11 77.9 4.7 45 212-256 16-65 (121)
45 4eef_G F-HB80.4, designed hema 98.2 1.9E-07 6.5E-12 74.7 0.2 43 213-255 20-66 (74)
46 4a69_C Nuclear receptor corepr 98.2 2.1E-06 7.3E-11 72.0 5.9 45 212-256 42-86 (94)
47 1x58_A Hypothetical protein 49 98.0 6.6E-06 2.3E-10 63.9 4.7 46 212-257 7-55 (62)
48 2xag_A Lysine-specific histone 97.7 4.2E-05 1.4E-09 86.3 6.7 87 43-131 177-267 (852)
49 1ign_A Protein (RAP1); RAP1,ye 97.6 2.9E-05 1E-09 75.0 4.0 44 213-256 8-57 (246)
50 3hm5_A DNA methyltransferase 1 96.7 0.002 6.8E-08 53.9 5.5 44 213-256 30-78 (93)
51 2ebi_A DNA binding protein GT- 96.3 0.0019 6.6E-08 52.5 3.0 45 213-257 4-62 (86)
52 1ug2_A 2610100B20RIK gene prod 96.2 0.0067 2.3E-07 50.3 5.3 44 214-257 34-80 (95)
53 1fex_A TRF2-interacting telome 95.9 0.0057 2E-07 46.8 3.8 43 214-256 3-55 (59)
54 1ofc_X ISWI protein; nuclear p 95.8 0.0081 2.8E-07 60.1 5.1 41 214-254 111-152 (304)
55 2aqe_A Transcriptional adaptor 95.8 0.011 3.9E-07 48.9 5.2 70 50-127 19-88 (90)
56 2cuj_A Transcriptional adaptor 95.7 0.017 5.7E-07 49.5 6.2 70 50-127 37-106 (108)
57 2xag_B REST corepressor 1; ami 95.7 0.0018 6.2E-08 68.4 0.0 49 213-261 189-237 (482)
58 2e5r_A Dystrobrevin alpha; ZZ 95.6 0.0089 3E-07 46.3 3.8 47 161-207 12-61 (63)
59 2elj_A Transcriptional adapter 95.5 0.021 7E-07 47.1 5.6 70 50-126 19-88 (88)
60 2dip_A Zinc finger SWIM domain 95.0 0.0056 1.9E-07 51.6 0.8 54 160-220 31-86 (98)
61 2lr8_A CAsp8-associated protei 93.6 0.0061 2.1E-07 47.9 0.0 44 213-257 14-60 (70)
62 4iej_A DNA methyltransferase 1 94.5 0.052 1.8E-06 45.2 5.4 44 213-256 30-78 (93)
63 2fc7_A ZZZ3 protein; structure 94.4 0.042 1.4E-06 44.7 4.5 50 160-209 21-76 (82)
64 2xb0_X Chromo domain-containin 92.8 0.073 2.5E-06 52.4 4.0 32 211-242 166-198 (270)
65 4b4c_A Chromodomain-helicase-D 92.3 0.095 3.3E-06 48.9 4.0 30 213-242 134-164 (211)
66 1tot_A CREB-binding protein; z 90.6 0.089 3.1E-06 39.1 1.5 42 160-207 6-48 (52)
67 4b4c_A Chromodomain-helicase-D 89.4 0.36 1.2E-05 44.9 5.0 40 213-252 7-51 (211)
68 1irz_A ARR10-B; helix-turn-hel 89.0 0.87 3E-05 35.3 6.0 43 213-255 7-54 (64)
69 2y9y_A Imitation switch protei 86.7 0.65 2.2E-05 47.6 5.2 42 214-256 124-167 (374)
70 1ofc_X ISWI protein; nuclear p 85.3 0.66 2.3E-05 46.3 4.3 47 212-258 211-273 (304)
71 2fu4_A Ferric uptake regulatio 65.7 5.4 0.00019 30.8 3.7 47 82-128 19-70 (83)
72 2heo_A Z-DNA binding protein 1 65.6 7.5 0.00026 29.5 4.4 52 75-127 5-56 (67)
73 2y9y_A Imitation switch protei 63.7 7.2 0.00025 39.9 5.1 46 213-258 228-289 (374)
74 1mzb_A Ferric uptake regulatio 58.8 11 0.00039 32.2 4.9 46 82-127 20-70 (136)
75 3q8t_A Beclin-1; autophagy, AT 57.4 79 0.0027 25.9 11.0 48 399-446 35-82 (96)
76 2o03_A Probable zinc uptake re 55.3 17 0.00059 30.8 5.4 51 77-128 8-63 (131)
77 2d8v_A Zinc finger FYVE domain 52.8 6.7 0.00023 30.6 2.1 45 160-206 8-52 (67)
78 2w57_A Ferric uptake regulatio 50.8 13 0.00045 32.5 4.0 46 82-127 19-69 (150)
79 2xig_A Ferric uptake regulatio 50.3 20 0.00069 31.3 5.1 48 79-127 26-78 (150)
80 1f5n_A Interferon-induced guan 49.4 94 0.0032 33.5 11.1 51 390-443 506-556 (592)
81 3e7l_A Transcriptional regulat 48.6 16 0.00054 27.2 3.6 27 218-244 18-44 (63)
82 2htj_A P fimbrial regulatory p 48.5 21 0.0007 27.5 4.4 46 82-129 2-47 (81)
83 1gmj_A ATPase inhibitor; coile 46.3 1.2E+02 0.004 24.6 9.1 55 376-434 25-79 (84)
84 2fe3_A Peroxide operon regulat 45.4 27 0.00091 30.2 5.1 46 82-128 24-74 (145)
85 3mwm_A ZUR, putative metal upt 43.9 28 0.00095 29.9 5.0 50 77-127 11-65 (139)
86 1ign_A Protein (RAP1); RAP1,ye 39.7 38 0.0013 32.6 5.5 23 234-256 173-195 (246)
87 3eyy_A Putative iron uptake re 39.4 28 0.00094 30.2 4.2 51 71-128 15-70 (145)
88 2xb0_X Chromo domain-containin 38.4 28 0.00095 34.0 4.5 39 213-251 3-46 (270)
89 4ham_A LMO2241 protein; struct 37.3 56 0.0019 27.6 5.8 55 76-131 18-73 (134)
90 3r0a_A Putative transcriptiona 36.1 61 0.0021 27.0 5.8 48 82-129 28-75 (123)
91 3tqn_A Transcriptional regulat 36.0 47 0.0016 27.3 4.9 56 75-131 12-68 (113)
92 4ets_A Ferric uptake regulatio 34.8 41 0.0014 29.8 4.6 46 82-128 35-87 (162)
93 3by6_A Predicted transcription 33.0 51 0.0017 27.8 4.8 54 75-129 14-68 (126)
94 1oyi_A Double-stranded RNA-bin 32.2 77 0.0026 25.4 5.4 54 80-137 17-70 (82)
95 2ek5_A Predicted transcription 31.9 50 0.0017 28.0 4.6 55 75-130 7-62 (129)
96 2d1h_A ST1889, 109AA long hypo 30.4 80 0.0027 24.4 5.3 37 95-131 35-71 (109)
97 1bja_A Transcription regulator 30.2 59 0.002 26.8 4.5 36 90-127 26-62 (95)
98 3oja_B Anopheles plasmodium-re 27.6 1.5E+02 0.0052 30.8 8.3 27 417-443 548-574 (597)
99 2k4b_A Transcriptional regulat 27.6 83 0.0028 25.6 5.0 40 87-129 43-86 (99)
100 1qgp_A Protein (double strande 26.9 94 0.0032 24.0 5.0 59 78-137 12-71 (77)
101 1weo_A Cellulose synthase, cat 26.9 38 0.0013 27.9 2.7 35 156-190 12-51 (93)
102 1umq_A Photosynthetic apparatu 26.8 53 0.0018 26.1 3.6 29 216-244 38-66 (81)
103 2oqg_A Possible transcriptiona 26.8 1E+02 0.0036 24.3 5.5 47 81-130 22-68 (114)
104 2vn2_A DNAD, chromosome replic 26.7 72 0.0025 26.9 4.6 40 92-131 47-86 (128)
105 2x4h_A Hypothetical protein SS 26.2 1.1E+02 0.0038 25.1 5.8 53 74-129 12-64 (139)
106 3neu_A LIN1836 protein; struct 26.0 70 0.0024 26.8 4.4 55 75-130 16-71 (125)
107 2kj8_A Putative prophage CPS-5 25.5 1E+02 0.0034 24.4 5.2 58 74-131 23-96 (118)
108 3e3v_A Regulatory protein RECX 25.5 1.2E+02 0.004 27.2 6.1 55 74-131 13-70 (177)
109 2jt1_A PEFI protein; solution 25.5 1.3E+02 0.0044 23.5 5.5 55 75-129 3-57 (77)
110 3c7j_A Transcriptional regulat 25.5 31 0.0011 32.2 2.3 58 72-130 26-83 (237)
111 1cf7_A Protein (transcription 25.1 1E+02 0.0034 24.2 4.8 47 80-127 15-62 (76)
112 3eco_A MEPR; mutlidrug efflux 25.1 95 0.0033 25.3 5.1 46 86-131 37-82 (139)
113 1v4r_A Transcriptional repress 25.0 30 0.001 27.7 1.8 56 73-129 12-68 (102)
114 3bro_A Transcriptional regulat 24.8 93 0.0032 25.2 5.0 41 91-131 45-85 (141)
115 2pjp_A Selenocysteine-specific 24.5 1.1E+02 0.0039 25.3 5.4 51 74-126 60-110 (121)
116 3cuo_A Uncharacterized HTH-typ 24.1 1.2E+02 0.004 23.2 5.2 49 81-131 25-73 (99)
117 2k02_A Ferrous iron transport 24.1 1.2E+02 0.004 24.5 5.2 42 84-127 6-47 (87)
118 1qbj_A Protein (double-strande 23.7 1.1E+02 0.0038 24.0 4.9 55 82-137 12-67 (81)
119 1ntc_A Protein (nitrogen regul 23.3 53 0.0018 26.0 3.0 27 218-244 50-76 (91)
120 2b0l_A GTP-sensing transcripti 23.2 55 0.0019 26.7 3.1 54 75-130 21-77 (102)
121 2avr_X Adhesion A; antiparalle 22.4 2.7E+02 0.0093 23.9 7.3 30 400-429 6-35 (119)
122 1xn7_A Hypothetical protein YH 22.1 1.2E+02 0.0043 23.6 4.9 41 84-126 6-46 (78)
123 3efg_A Protein SLYX homolog; x 22.0 2E+02 0.007 22.6 6.1 36 400-435 11-50 (78)
124 2kj5_A Phage integrase; GFT PS 21.8 48 0.0017 26.0 2.5 22 110-131 76-97 (116)
125 1v5n_A PDI-like hypothetical p 21.5 42 0.0014 27.1 2.0 32 160-191 47-78 (89)
126 2qvo_A Uncharacterized protein 21.2 1.2E+02 0.0042 23.6 4.7 34 93-126 27-60 (95)
127 1y0u_A Arsenical resistance op 20.7 1.5E+02 0.005 23.1 5.1 45 81-129 32-76 (96)
128 1sfx_A Conserved hypothetical 20.6 1.3E+02 0.0045 23.0 4.8 36 96-131 34-69 (109)
129 1xnl_A ASLV/FP, membrane prote 20.5 32 0.0011 22.2 0.8 21 321-341 7-27 (29)
130 4b8x_A SCO5413, possible MARR- 20.4 98 0.0033 26.1 4.3 41 91-131 46-86 (147)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=2e-41 Score=289.76 Aligned_cols=93 Identities=44% Similarity=0.821 Sum_probs=84.7
Q ss_pred ceecCCCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHH
Q 012334 39 VVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFD 118 (466)
Q Consensus 39 ~ivIPs~~~wF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~ 118 (466)
+=.-|+|+.||++++||+||+++|||||+|++++|||++|++|||+||++||.||.+|||+|+||++|+|||++|+|||+
T Consensus 10 ~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~ 89 (104)
T 2fq3_A 10 HGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHK 89 (104)
T ss_dssp -------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHH
T ss_pred CCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCC
Q 012334 119 FLETWGLINYFAS 131 (466)
Q Consensus 119 FLe~wGlINy~~~ 131 (466)
|||+|||||||++
T Consensus 90 FLe~wGLIN~~v~ 102 (104)
T 2fq3_A 90 FLTKWGLINYQVD 102 (104)
T ss_dssp HHHHTTSSSSCC-
T ss_pred HHHHcCeeccCCC
Confidence 9999999999998
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=288.92 Aligned_cols=93 Identities=30% Similarity=0.468 Sum_probs=90.8
Q ss_pred CceecCCCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHhhc--cchHHHHHH
Q 012334 38 DVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTL--VGDVGSIRR 115 (466)
Q Consensus 38 ~~ivIPs~~~wF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l--~gDv~~i~R 115 (466)
.+++||+|+.||++++||+||+++|||||+|+ ++|||++|++|||+||++||.||.+|||+|+||++| .|||++|+|
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~R 89 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGR 89 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHH
Confidence 57999999999999999999999999999998 799999999999999999999999999999999999 599999999
Q ss_pred HHHhhhhcccccCCCC
Q 012334 116 VFDFLETWGLINYFAS 131 (466)
Q Consensus 116 vh~FLe~wGlINy~~~ 131 (466)
||+|||+|||||||++
T Consensus 90 Vh~FLe~wGLIN~~~~ 105 (111)
T 2dce_A 90 IHTYLELIGAINFGCE 105 (111)
T ss_dssp HHHHHHHHSSSSCSCT
T ss_pred HHHHHHHcCeeecCCC
Confidence 9999999999999998
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=128.53 Aligned_cols=54 Identities=44% Similarity=0.970 Sum_probs=52.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcCCCCCccc
Q 012334 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFI 264 (466)
Q Consensus 211 ~~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqLPIeD~fl 264 (466)
.....||.+|+.+||++|++||++|.+||+|||+||+.||+.||.++||+|+|+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~ 69 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL 69 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhccccccc
Confidence 346899999999999999999999999999999999999999999999999999
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.42 E-value=2.2e-13 Score=104.71 Aligned_cols=49 Identities=24% Similarity=0.630 Sum_probs=46.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC-CCCHHHHHHHHhcCCCC
Q 012334 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS-GKSEKDCITHFIKLPFG 260 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~Vg-tKT~~eCi~hflqLPIe 260 (466)
....||.+|+.+||++|++|| +||.+||++|| +||+.||+.||.+++|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 357899999999999999999 99999999999 89999999999998874
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=2.1e-12 Score=99.73 Aligned_cols=50 Identities=34% Similarity=0.767 Sum_probs=46.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcCCCCC
Q 012334 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKLPFGQ 261 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~VgtKT~~eCi~hflqLPIeD 261 (466)
....||.+|+.+||++|++|| ++|.+||++|++||+.||+.||.++.+..
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 457899999999999999999 89999999999999999999999877654
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.22 E-value=6.9e-12 Score=100.92 Aligned_cols=63 Identities=32% Similarity=0.482 Sum_probs=53.8
Q ss_pred CCCceecccCcccCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcCCCCCcc
Q 012334 200 SSDFRRVEISEEARSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKLPFGQEF 263 (466)
Q Consensus 200 s~dF~~~~~~~~~~~~WT~~E~l~LLEaIe~yg----~nW~~IA~~VgtKT~~eCi~hflqLPIeD~f 263 (466)
..++.+.+.+......||.+|+.+|+++|.+|| ++|.+||++|++||..||+.||..| ++|++
T Consensus 5 ~~~~~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~~ 71 (73)
T 2cqr_A 5 SSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGPS 71 (73)
T ss_dssp SSSCCCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSCC
T ss_pred ccccccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHccc
Confidence 456666666666678999999999999999999 6899999999999999999999986 55543
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.08 E-value=1.3e-10 Score=86.83 Aligned_cols=45 Identities=24% Similarity=0.699 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46899999999999999999 5899999999999999999999863
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.06 E-value=1.4e-10 Score=86.60 Aligned_cols=44 Identities=23% Similarity=0.604 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHHHhCCCCHHHHHHHHhc
Q 012334 213 RSDWTEKETLQLLEAIMHFGD-DWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~-nW~~IA~~VgtKT~~eCi~hflq 256 (466)
...||.+|+.+|+++|++||. +|..||++|++||..||..||..
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 468999999999999999995 99999999999999999999976
No 9
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.04 E-value=2.1e-10 Score=92.20 Aligned_cols=46 Identities=28% Similarity=0.578 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcCC
Q 012334 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKLP 258 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg----~nW~~IA~~VgtKT~~eCi~hflqLP 258 (466)
...||.+|+.+|.+||..|+ ++|++||.+||+||.+||+.||..|+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998 57999999999999999999999984
No 10
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.03 E-value=2.7e-10 Score=85.58 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 012334 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS--GKSEKDCITHFIKL 257 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~Vg--tKT~~eCi~hflqL 257 (466)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..+
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 36899999999999999999 89999999999 99999999999763
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.03 E-value=3.3e-10 Score=87.13 Aligned_cols=45 Identities=27% Similarity=0.730 Sum_probs=42.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLR 52 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 357899999999999999999 799999999999999999999986
No 12
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.7e-10 Score=92.63 Aligned_cols=45 Identities=20% Similarity=0.493 Sum_probs=42.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhC------CCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 212 ARSDWTEKETLQLLEAIMHFG------DDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg------~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
....||.+|+.+|+++|++|| ++|..||++|++||..||+.||..
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQK 57 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 457899999999999999999 789999999999999999999974
No 13
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.00 E-value=3.7e-10 Score=90.13 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=43.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
....||.+|+.+|++++++||.+|..||++|++||..||..||..+
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999998764
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=6.9e-10 Score=87.96 Aligned_cols=44 Identities=27% Similarity=0.628 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
...||.+|+.+|+++|++|| ++|..||.+|++||..||..||..
T Consensus 9 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 9 GGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE 53 (70)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 46899999999999999999 899999999999999999999987
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.94 E-value=9.2e-10 Score=86.23 Aligned_cols=45 Identities=11% Similarity=0.421 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 012334 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS--GKSEKDCITHFIKL 257 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~Vg--tKT~~eCi~hflqL 257 (466)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999 79999999987 89999999999753
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.90 E-value=1.5e-09 Score=85.80 Aligned_cols=45 Identities=18% Similarity=0.413 Sum_probs=42.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC--CCCHHHHHHHHhc
Q 012334 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS--GKSEKDCITHFIK 256 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~Vg--tKT~~eCi~hflq 256 (466)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..||..
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~ 56 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHH
Confidence 357899999999999999999 89999999999 9999999999986
No 17
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=5.1e-09 Score=81.09 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=42.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
....||.+|..++++++.+||.+|..||.+|++||..||+.||..
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999864
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3.8e-09 Score=82.75 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=41.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
....||.+|+.+|+++++.||.+|..||+.+| ||..||+.||..+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~ 52 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFL 52 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHH
Confidence 35789999999999999999999999999665 9999999999873
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.78 E-value=4.3e-09 Score=88.33 Aligned_cols=46 Identities=26% Similarity=0.570 Sum_probs=42.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 212 ARSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg----~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
....||.+|+.+|+++|.+|| +.|.+||++|++||.+||+.||..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 356899999999999999997 5699999999999999999999885
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.23 E-value=8.9e-10 Score=91.63 Aligned_cols=46 Identities=22% Similarity=0.521 Sum_probs=43.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
....||.+|+.+|++++.+||.+|..||.+|++||..||..||..+
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 4578999999999999999999999999999999999999999753
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.72 E-value=1.6e-08 Score=81.31 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=42.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
....||.+|+.+|++++.+||.+|..||+++ +||..+|..+|..|
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 4679999999999999999999999999999 99999999999874
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.71 E-value=1.2e-08 Score=87.03 Aligned_cols=43 Identities=26% Similarity=0.647 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 214 ~~WT~~E~l~LLEaIe~yg-~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
..||.+|+.+|+++|+.|| ++|..||++|++||+.||..||.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 5799999999999999999 699999999999999999999986
No 23
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.69 E-value=1.8e-08 Score=96.41 Aligned_cols=46 Identities=24% Similarity=0.536 Sum_probs=43.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 211 ~~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
.....||++|..++++|+.+||.||..||++||+||..||+.||..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 176 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999974
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.68 E-value=1.9e-08 Score=85.24 Aligned_cols=46 Identities=22% Similarity=0.662 Sum_probs=42.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 357899999999999999999 5899999999999999999999883
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.63 E-value=3e-08 Score=87.02 Aligned_cols=45 Identities=20% Similarity=0.521 Sum_probs=43.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
....||.+|+.+|+++|++||.+|..||++|++||..||..||..
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh
Confidence 457899999999999999999999999999999999999999987
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.62 E-value=3.3e-08 Score=84.37 Aligned_cols=45 Identities=16% Similarity=0.548 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
...||.+|+.+|++++..||.+|..||++|++||..+|..||..|
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999763
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.61 E-value=3e-08 Score=83.99 Aligned_cols=45 Identities=22% Similarity=0.587 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
...||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999753
No 28
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.59 E-value=6e-08 Score=85.14 Aligned_cols=45 Identities=24% Similarity=0.731 Sum_probs=42.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 457899999999999999999 689999999999999999999987
No 29
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.59 E-value=4.7e-08 Score=80.37 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHH----hCCCCHHHHHHHHhcC
Q 012334 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQH----VSGKSEKDCITHFIKL 257 (466)
Q Consensus 214 ~~WT~~E~l~LLEaIe~yg-~nW~~IA~~----VgtKT~~eCi~hflqL 257 (466)
..||.+|+..|++||++|| |+|.+|+++ +.+||..+|..||..+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 3699999999999999999 799999997 7889999999999874
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.58 E-value=2.3e-08 Score=88.31 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
++.||.+|+.+|+++|+.|| +||..||.+|++||..||..||..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN 46 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh
Confidence 46899999999999999999 899999999999999999999987
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.58 E-value=3.7e-08 Score=86.46 Aligned_cols=44 Identities=20% Similarity=0.594 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
...||.+|+.+|++++.+||.+|..||++|++||..+|..||..
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999976
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.54 E-value=8.2e-08 Score=84.26 Aligned_cols=45 Identities=22% Similarity=0.595 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
...||.+|+.+|++++.+||.+|..||++|++||..+|..||..+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999864
No 33
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.52 E-value=1.6e-07 Score=104.80 Aligned_cols=90 Identities=22% Similarity=0.272 Sum_probs=76.0
Q ss_pred CCCceecCCCCCCCCC------------CCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHH
Q 012334 36 EPDVVNVPSYSRWFSF------------DSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVR 103 (466)
Q Consensus 36 q~~~ivIPs~~~wF~~------------~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLt~t~~r 103 (466)
+++...+..|-.+|-. |.|+..|+..||||..+ +.+|+.|||.|+.+|+.||...||...|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~~ 286 (776)
T 4gut_A 213 SVHVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKCI 286 (776)
T ss_dssp -----CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHHG
T ss_pred cccccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHhh
Confidence 4556667788888866 99999999999999975 57999999999999999999999999998
Q ss_pred hhcc-------chHHHHHHHHHhhhhcccccCCCC
Q 012334 104 RTLV-------GDVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 104 ~~l~-------gDv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
+.+. .++..+.+|+.||.++|+||+++.
T Consensus 287 ~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (776)
T 4gut_A 287 PHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVL 321 (776)
T ss_dssp GGCCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTC
T ss_pred hhcccccccccccHHHHHHHHHHHHHhhhhhcccc
Confidence 8763 356778999999999999999876
No 34
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.52 E-value=6.4e-08 Score=105.75 Aligned_cols=85 Identities=22% Similarity=0.486 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHhh----ccchHHHHHHHHHhh
Q 012334 45 YSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRT----LVGDVGSIRRVFDFL 120 (466)
Q Consensus 45 ~~~wF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~----l~gDv~~i~Rvh~FL 120 (466)
+++.|+.+.+|+.|...|||+..+ +..+...|+.|||.|+.+|+.||..+||+.+|.-. +..|...|.+|+.|+
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~--~~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~ 85 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 85 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGGCHHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcC--chHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccCChHHHHHHHHHH
Confidence 568899999999999999999975 22245689999999999999999999999999544 447889999999999
Q ss_pred hhcccccCCCC
Q 012334 121 ETWGLINYFAS 131 (466)
Q Consensus 121 e~wGlINy~~~ 131 (466)
.++|+||+++.
T Consensus 86 ~~~~~~~~~~~ 96 (662)
T 2z3y_A 86 ERHGLINFGIY 96 (662)
T ss_dssp HHTTSSSCSSC
T ss_pred HHHHHHhcCCc
Confidence 99999998877
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.49 E-value=1e-07 Score=84.15 Aligned_cols=45 Identities=16% Similarity=0.513 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
...||.+|+.+|++++..||.+|..||++|++||..+|..||..+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999874
No 36
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=2.7e-07 Score=71.88 Aligned_cols=44 Identities=18% Similarity=0.507 Sum_probs=41.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHH-hCCCCHHHHHHHHh
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQH-VSGKSEKDCITHFI 255 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~-VgtKT~~eCi~hfl 255 (466)
....||++|..++++|+.+||.||..|+.+ |++||..||+.+|.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 357899999999999999999999999996 99999999999985
No 37
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.40 E-value=2.7e-07 Score=97.34 Aligned_cols=45 Identities=24% Similarity=0.539 Sum_probs=42.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
....||.+|..++|+||.+||.||..||++|||||..||+.||..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999974
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.35 E-value=3.6e-07 Score=73.14 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcCCCCCc
Q 012334 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKLPFGQE 262 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg----~nW~~IA~~VgtKT~~eCi~hflqLPIeD~ 262 (466)
...||.+|+.+|..++.+|+ +.|++||++|| ||.+||+.||..| .+|.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L-~~d~ 59 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL-KDSV 59 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH-HHSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH-HHhc
Confidence 46899999999999999998 56999999995 9999999999998 6664
No 39
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.32 E-value=5.4e-07 Score=79.04 Aligned_cols=46 Identities=28% Similarity=0.431 Sum_probs=42.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 012334 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV----SGKSEKDCITHFIKL 257 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~V----gtKT~~eCi~hflqL 257 (466)
....||.+|+..|++||++|| |+|.+|+++. .+||..+|..+|..|
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 357899999999999999999 7999999986 689999999999874
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.32 E-value=5.3e-07 Score=81.82 Aligned_cols=45 Identities=22% Similarity=0.587 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
...||.+|+.+|++++.+||.+|..||++|++||..+|..||..+
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999875
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.30 E-value=5e-07 Score=77.35 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=42.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 012334 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV----SGKSEKDCITHFIKL 257 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~V----gtKT~~eCi~hflqL 257 (466)
....||.+|+..|++||++|| |+|.+|++.. .+||..+|..+|..|
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 357899999999999999999 7999999977 679999999999874
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.29 E-value=7e-07 Score=81.04 Aligned_cols=46 Identities=22% Similarity=0.662 Sum_probs=42.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
....||.+|+.+|+++|..|| ++|..||++|++||..||..||..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 357899999999999999999 5899999999999999999999873
No 43
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.29 E-value=8.6e-07 Score=70.49 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=41.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHH-hCCCCHHHHHHHHhc
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQH-VSGKSEKDCITHFIK 256 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~-VgtKT~~eCi~hflq 256 (466)
....||++|..++.+|+.+||.||..|+.+ |++||..||+.+|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 346899999999999999999999999995 999999999999964
No 44
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.23 E-value=8e-07 Score=77.89 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=41.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh----CCCCHHHHHHHHhc
Q 012334 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV----SGKSEKDCITHFIK 256 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~V----gtKT~~eCi~hflq 256 (466)
....||.+|+..|++||++|| |+|.+|+++. .+||..+|..+|..
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrn 65 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 65 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHH
Confidence 457999999999999999999 7999999996 67999999999987
No 45
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.20 E-value=1.9e-07 Score=74.66 Aligned_cols=43 Identities=28% Similarity=0.533 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHh
Q 012334 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFI 255 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg----~nW~~IA~~VgtKT~~eCi~hfl 255 (466)
...||.+|..+|-.||.+|+ +.|++||..||+||++||+.||-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 56899999999999999999 47999999999999999999983
No 46
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.17 E-value=2.1e-06 Score=72.02 Aligned_cols=45 Identities=18% Similarity=0.402 Sum_probs=42.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflq 256 (466)
....||.+|-.++.+++..||.||..||++|++||..||+.+|..
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 357899999999999999999999999999999999999999953
No 47
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.97 E-value=6.6e-06 Score=63.86 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=40.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHH---HhCCCCHHHHHHHHhcC
Q 012334 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQ---HVSGKSEKDCITHFIKL 257 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg~nW~~IA~---~VgtKT~~eCi~hflqL 257 (466)
....||.+|+..|++||++||.+|.+|+. ++..||.-....+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 45789999999999999999999999994 66679999998888654
No 48
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.66 E-value=4.2e-05 Score=86.33 Aligned_cols=87 Identities=22% Similarity=0.473 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHH----hhccchHHHHHHHHH
Q 012334 43 PSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVR----RTLVGDVGSIRRVFD 118 (466)
Q Consensus 43 Ps~~~wF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLt~t~~r----~~l~gDv~~i~Rvh~ 118 (466)
..|.++|+.+.+|..|+.+||++-.. .-....+|+.+||.|+..|+.||...++...|. |.+..|...|.++++
T Consensus 177 aa~~~r~p~~~~~~~e~~~f~~~~~~--~~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~~p~~i~~~~~ 254 (852)
T 2xag_A 177 AAFQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHS 254 (852)
T ss_dssp HHHTTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTSCHHHHHHHHH
T ss_pred HHHHhcCCCcccChHHHHHHHHHHHh--hhhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccCCcHHHHHHHH
Confidence 35778999999999999999998764 112456999999999999999999999988874 445578999999999
Q ss_pred hhhhcccccCCCC
Q 012334 119 FLETWGLINYFAS 131 (466)
Q Consensus 119 FLe~wGlINy~~~ 131 (466)
|+.+||+||+++.
T Consensus 255 ~~~~~~~~~~~~~ 267 (852)
T 2xag_A 255 YLERHGLINFGIY 267 (852)
T ss_dssp HHHHTTSSSCSSC
T ss_pred HHHHHHHHhcCcc
Confidence 9999999998876
No 49
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.62 E-value=2.9e-05 Score=74.99 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC------HHHHHHHhCCCCHHHHHHHHhc
Q 012334 213 RSDWTEKETLQLLEAIMHFGDD------WRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~n------W~~IA~~VgtKT~~eCi~hflq 256 (466)
...||.+|+.+||+.+++||.. |..||+++.+||..+|+.||..
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~ 57 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRV 57 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 5689999999999999999853 9999999999999999999976
No 50
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.71 E-value=0.002 Score=53.85 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHh-----CCCCHHHHHHHHhc
Q 012334 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHV-----SGKSEKDCITHFIK 256 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~nW~~IA~~V-----gtKT~~eCi~hflq 256 (466)
..+||.+|+..|++.+++||-.|--|++.. ++||.++...+|-.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~ 78 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHH
Confidence 379999999999999999999999999999 47999999999976
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.33 E-value=0.0019 Score=52.52 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CCHHHHHHHhC----CCCHHHHHHHHhcC
Q 012334 213 RSDWTEKETLQLLEAIMHFG----------DDWRKVAQHVS----GKSEKDCITHFIKL 257 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg----------~nW~~IA~~Vg----tKT~~eCi~hflqL 257 (466)
...||.+|+++||++..... .-|+.||+.|. .||+.||..+|-.|
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35799999999999986533 27999999985 59999999999874
No 52
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.15 E-value=0.0067 Score=50.31 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHhC---CCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 214 SDWTEKETLQLLEAIMHFG---DDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 214 ~~WT~~E~l~LLEaIe~yg---~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
--||.+|+..+|.+-++-| +-|..||+.+|+||++|...||-+|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4699999999999999998 5899999999999999999999874
No 53
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.95 E-value=0.0057 Score=46.78 Aligned_cols=43 Identities=12% Similarity=0.319 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhC-------C--CHHHHHH-HhCCCCHHHHHHHHhc
Q 012334 214 SDWTEKETLQLLEAIMHFG-------D--DWRKVAQ-HVSGKSEKDCITHFIK 256 (466)
Q Consensus 214 ~~WT~~E~l~LLEaIe~yg-------~--nW~~IA~-~VgtKT~~eCi~hflq 256 (466)
..||.+|+..|++-|..|. | -|+++++ .+..+|-+.|+.||++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 5799999999999999993 3 4999999 7989999999999986
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.78 E-value=0.0081 Score=60.11 Aligned_cols=41 Identities=29% Similarity=0.572 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHH
Q 012334 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHF 254 (466)
Q Consensus 214 ~~WT~~E~l~LLEaIe~yg-~nW~~IA~~VgtKT~~eCi~hf 254 (466)
.+||..+-..++.|.++|| ++|..||..|++||++|...++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 6799999999999999999 8999999999999999995443
No 55
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=95.77 E-value=0.011 Score=48.88 Aligned_cols=70 Identities=20% Similarity=0.374 Sum_probs=58.7
Q ss_pred CCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhccccc
Q 012334 50 SFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (466)
Q Consensus 50 ~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 127 (466)
+.+-+|+-|++..-.. .=.|..|+.+...||.-...+. .++.++||..+.-|++-..||++||.+.|+|+
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~kiD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSSSSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Confidence 4567888888876532 2359999999999999886643 39999999888899999999999999999996
No 56
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=95.74 E-value=0.017 Score=49.53 Aligned_cols=70 Identities=20% Similarity=0.374 Sum_probs=59.3
Q ss_pred CCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhccccc
Q 012334 50 SFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (466)
Q Consensus 50 ~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 127 (466)
+.+-+|+-|++..-.. .=.|..|+.+.+.||.-+..+. .++.++||+.+.-|++-..||++||.+.|+|+
T Consensus 37 g~~LLs~~E~~LCs~l------rL~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~kID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVV------RLVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHTSCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhcccHHHHHHHHHHHHHcCCCC
Confidence 4568899999876533 2359999999999999986643 49999999988899999999999999999996
No 57
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.69 E-value=0.0018 Score=68.43 Aligned_cols=49 Identities=14% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcCCCCC
Q 012334 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQ 261 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~nW~~IA~~VgtKT~~eCi~hflqLPIeD 261 (466)
...||.+|..++.+++..||.||..|+++|++||..+|+.+|..-=-..
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~WKKt~ 237 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTR 237 (482)
T ss_dssp -------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccccccc
Confidence 4589999999999999999999999999999999999999987644443
No 58
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.65 E-value=0.0089 Score=46.31 Aligned_cols=47 Identities=17% Similarity=0.443 Sum_probs=33.7
Q ss_pred ccccCCCCc-cccccccccC-CCcccchhhhccCCCCCCC-CCCCceecc
Q 012334 161 RLCNGCKTL-CTIACFACDK-YDLTLCARCYVRGNHRVGV-SSSDFRRVE 207 (466)
Q Consensus 161 ~~C~~C~~~-~~~~~~~c~k-~d~~lC~~Cf~~G~~~~~~-~s~dF~~~~ 207 (466)
..|++|+.. +.-.+|.|.. .|++||..||..|.....+ .+|.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 689999975 5444445532 3788999999999865444 678887754
No 59
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.021 Score=47.13 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=58.5
Q ss_pred CCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccc
Q 012334 50 SFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (466)
Q Consensus 50 ~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 126 (466)
+.+-+|+-|++..-.. .=.|..|+.+.+.||.-+..+ ...++.++||..+.-|++-..||++||.+.|+|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLNIDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 4567888888776432 235999999999999988764 457999999988889999999999999999987
No 60
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=94.99 E-value=0.0056 Score=51.59 Aligned_cols=54 Identities=28% Similarity=0.618 Sum_probs=36.6
Q ss_pred cccccCCCCc-cccccccccC-CCcccchhhhccCCCCCCCCCCCceecccCcccCCCCCHHH
Q 012334 160 KRLCNGCKTL-CTIACFACDK-YDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKE 220 (466)
Q Consensus 160 k~~C~~C~~~-~~~~~~~c~k-~d~~lC~~Cf~~G~~~~~~~s~dF~~~~~~~~~~~~WT~~E 220 (466)
...|++|+.. +.-.+|.|.. .|++||..||..|.+ ..|.|.++... ...|+..|
T Consensus 31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~H----~~H~f~~i~~~---~~~w~~~e 86 (98)
T 2dip_A 31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYCH----LSHTFTFREKR---NQKWRSLE 86 (98)
T ss_dssp CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTSG----GGSCEEECCSS---SCCCEECC
T ss_pred CCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCCC----CCCCeeEecCC---CCCCcccc
Confidence 3689999963 4434444432 368899999999863 67899887543 34576543
No 61
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.59 E-value=0.0061 Score=47.95 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHHHhCCCCHHHHHHHHhcC
Q 012334 213 RSDWTEKETLQLLEAIMHFG---DDWRKVAQHVSGKSEKDCITHFIKL 257 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg---~nW~~IA~~VgtKT~~eCi~hflqL 257 (466)
---||.+|+-.+|...++-| .-|..||+.+ +||++|...+|.+|
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 35799999999999999999 4899999999 79999999999885
No 62
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.49 E-value=0.052 Score=45.25 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhC-----CCCHHHHHHHHhc
Q 012334 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVS-----GKSEKDCITHFIK 256 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~nW~~IA~~Vg-----tKT~~eCi~hflq 256 (466)
..+||.+|+..|++.+++|+-.|--|++.-. .||.++-..||.+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~ 78 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999974 6999999999976
No 63
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=94.35 E-value=0.042 Score=44.70 Aligned_cols=50 Identities=14% Similarity=0.275 Sum_probs=34.5
Q ss_pred cccccCCCC-ccccccccccC-CC---cccchhhhccCCCC-CCCCCCCceecccC
Q 012334 160 KRLCNGCKT-LCTIACFACDK-YD---LTLCARCYVRGNHR-VGVSSSDFRRVEIS 209 (466)
Q Consensus 160 k~~C~~C~~-~~~~~~~~c~k-~d---~~lC~~Cf~~G~~~-~~~~s~dF~~~~~~ 209 (466)
...|++|+. .+.-.+|.|.. .| ++||..||..|.+. .+...|.|.++...
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 468999996 34333444432 25 88999999998764 44478999887643
No 64
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.77 E-value=0.073 Score=52.39 Aligned_cols=32 Identities=25% Similarity=0.665 Sum_probs=28.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh
Q 012334 211 EARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV 242 (466)
Q Consensus 211 ~~~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~V 242 (466)
.....|+.+|+..||-||.+|| |+|+.|-.--
T Consensus 166 ~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 166 NWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCCCCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 3457899999999999999999 9999997653
No 65
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.30 E-value=0.095 Score=48.85 Aligned_cols=30 Identities=23% Similarity=0.614 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh
Q 012334 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHV 242 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg-~nW~~IA~~V 242 (466)
...||.+|+..||-||.+|| |+|+.|-.-.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 46799999999999999999 9999987754
No 66
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=90.64 E-value=0.089 Score=39.12 Aligned_cols=42 Identities=26% Similarity=0.584 Sum_probs=30.2
Q ss_pred cccccCCCCccccccccccC-CCcccchhhhccCCCCCCCCCCCceecc
Q 012334 160 KRLCNGCKTLCTIACFACDK-YDLTLCARCYVRGNHRVGVSSSDFRRVE 207 (466)
Q Consensus 160 k~~C~~C~~~~~~~~~~c~k-~d~~lC~~Cf~~G~~~~~~~s~dF~~~~ 207 (466)
.+.|++|+..++ .+|.|.. .|++||..||..|.+ .|.+.++.
T Consensus 6 ~~~Cd~C~~~ig-~R~~C~~C~dyDLC~~C~~~~~H-----~H~m~~~~ 48 (52)
T 1tot_A 6 VYTCNECKHHVE-TRWHCTVCEDYDLCINCYNTKSH-----THKMVKWG 48 (52)
T ss_dssp CEEETTTTEEES-SEEEESSSSSCEECHHHHHHHCC-----CSSEEEEC
T ss_pred EEECCCCCCCCc-ceEEcCCCCCchhHHHHHhCCCC-----CCceEEec
Confidence 467999998864 3455532 378899999999874 47776654
No 67
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.39 E-value=0.36 Score=44.87 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHHHhC--CCCHHHHHH
Q 012334 213 RSDWTEKETLQLLEAIMHFG---DDWRKVAQHVS--GKSEKDCIT 252 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg---~nW~~IA~~Vg--tKT~~eCi~ 252 (466)
-.+||..|...|+-|+.+|| +.|+.|++... .||.++...
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 36899999999999999999 78999999854 689888765
No 68
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=88.95 E-value=0.87 Score=35.35 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---HHHHHHHhCC--CCHHHHHHHHh
Q 012334 213 RSDWTEKETLQLLEAIMHFGDD---WRKVAQHVSG--KSEKDCITHFI 255 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg~n---W~~IA~~Vgt--KT~~eCi~hfl 255 (466)
.-.||.+.-..+++||++.|.+ |..|-+.||. -|.+++..|.-
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 4579999999999999999955 8999999984 59999988764
No 69
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=86.70 E-value=0.65 Score=47.61 Aligned_cols=42 Identities=17% Similarity=0.469 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC-CCCHHHHHHHHhc
Q 012334 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQHVS-GKSEKDCITHFIK 256 (466)
Q Consensus 214 ~~WT~~E~l~LLEaIe~yg-~nW~~IA~~Vg-tKT~~eCi~hflq 256 (466)
.+||..+-..++-|.++|| +|-..||..|+ +||++|.. .|.+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~ 167 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAK 167 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHH
Confidence 6899999999999999999 89999999998 89999987 4443
No 70
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=85.26 E-value=0.66 Score=46.32 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=39.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhC----CCHHHHHH------------HhCCCCHHHHHHHHhcCC
Q 012334 212 ARSDWTEKETLQLLEAIMHFG----DDWRKVAQ------------HVSGKSEKDCITHFIKLP 258 (466)
Q Consensus 212 ~~~~WT~~E~l~LLEaIe~yg----~nW~~IA~------------~VgtKT~~eCi~hflqLP 258 (466)
.+..||.+|+-.||-+|.+|| |+|+.|-. ++-+||+.|+..|--.|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 346899999999999999999 78999974 455899999887776543
No 71
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=65.68 E-value=5.4 Score=30.82 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCcceeHHHHHhhc-----cchHHHHHHHHHhhhhcccccC
Q 012334 82 RDSIVKHYRENPSRKITFTDVRRTL-----VGDVGSIRRVFDFLETWGLINY 128 (466)
Q Consensus 82 RN~ii~~yr~np~~yLt~t~~r~~l-----~gDv~~i~Rvh~FLe~wGlINy 128 (466)
|-.|++....++...+|+.+.-..+ .-+...|.|....|+..|+|.-
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 5667776655432689999988777 4488999999999999999963
No 72
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=65.58 E-value=7.5 Score=29.48 Aligned_cols=52 Identities=6% Similarity=0.045 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhccccc
Q 012334 75 PRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (466)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 127 (466)
|..-.+.|..|++....+ ..++|.++.-+.+.-.-..+.|+..=|+..|+|-
T Consensus 5 ~~~m~~~~~~IL~~L~~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp ----CHHHHHHHHHHHHH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccHHHHHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 433345688999988774 3679999999889889999999999999999984
No 73
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=63.71 E-value=7.2 Score=39.91 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHh------------CCCCHHHHHHHHhcCC
Q 012334 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHV------------SGKSEKDCITHFIKLP 258 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg----~nW~~IA~~V------------gtKT~~eCi~hflqLP 258 (466)
+..||.+|+-.||-+|.+|| |+|+.|-..+ -+||+.++..|...|.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLL 289 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 46899999999999999999 7899997764 4799999877765543
No 74
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=58.79 E-value=11 Score=32.19 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCcceeHHHHHhhcc-----chHHHHHHHHHhhhhccccc
Q 012334 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLIN 127 (466)
Q Consensus 82 RN~ii~~yr~np~~yLt~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlIN 127 (466)
|-.|++....++...+|+.+.-..|. -+...+.|...+|...|||.
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 77788877765437999999877773 47899999999999999997
No 75
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=57.42 E-value=79 Score=25.92 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012334 399 GIVEVQMKEIQDKIIRFESLDLQMEEEWKQLEQVKNLLFVDQLSVLFH 446 (466)
Q Consensus 399 ~iie~QlkKlelKLk~feeLE~~le~Er~~Le~~r~~l~~dRl~~~~~ 446 (466)
..|+.+|+.++..+..++.-|..+.+|+..+..+.-.+..++-++--+
T Consensus 35 ~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q 82 (96)
T 3q8t_A 35 KVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999988888888877544
No 76
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=55.32 E-value=17 Score=30.84 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhCCCcceeHHHHHhhc-----cchHHHHHHHHHhhhhcccccC
Q 012334 77 VYRYYRDSIVKHYRENPSRKITFTDVRRTL-----VGDVGSIRRVFDFLETWGLINY 128 (466)
Q Consensus 77 ~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l-----~gDv~~i~Rvh~FLe~wGlINy 128 (466)
+.-.-|-.|++....+ ...+|+.+.-..| .-+...+.|...+|...|||.=
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 3445688899987764 6799999987777 2488999999999999999973
No 77
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=52.79 E-value=6.7 Score=30.57 Aligned_cols=45 Identities=24% Similarity=0.557 Sum_probs=33.4
Q ss_pred cccccCCCCccccccccccCCCcccchhhhccCCCCCCCCCCCceec
Q 012334 160 KRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRV 206 (466)
Q Consensus 160 k~~C~~C~~~~~~~~~~c~k~d~~lC~~Cf~~G~~~~~~~s~dF~~~ 206 (466)
.+-|..|..+-+++|..|+. -.-|..||-.+........|..++.
T Consensus 8 ~pWC~ICneDAtlrC~gCdg--DLYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 8 LPWCCICNEDATLRCAGCDG--DLYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp CSSCTTTCSCCCEEETTTTS--EEECSSHHHHHTTTSSTTTCCEECC
T ss_pred CCeeEEeCCCCeEEecCCCC--ceehHHHHHHHccchhhhccceeec
Confidence 45799999998999999973 3579999999885444555544433
No 78
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=50.79 E-value=13 Score=32.47 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCcceeHHHHHhhcc-----chHHHHHHHHHhhhhccccc
Q 012334 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLIN 127 (466)
Q Consensus 82 RN~ii~~yr~np~~yLt~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlIN 127 (466)
|-.|++....++...+|+.+.-..|. -+...|.|...+|+..|||.
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 67788876655337999999877773 37899999999999999996
No 79
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=50.32 E-value=20 Score=31.26 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCCcceeHHHHHhhcc-----chHHHHHHHHHhhhhccccc
Q 012334 79 RYYRDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLIN 127 (466)
Q Consensus 79 ~~~RN~ii~~yr~np~~yLt~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlIN 127 (466)
-.-|-.|++....+ ...+|+.+.-..|. -+...+.|...+|+..|||.
T Consensus 26 T~qR~~IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 26 SKQREEVVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34477888888776 45999999877763 37899999999999999997
No 80
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=49.35 E-value=94 Score=33.47 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012334 390 ELDVEKAISGIVEVQMKEIQDKIIRFESLDLQMEEEWKQLEQVKNLLFVDQLSV 443 (466)
Q Consensus 390 Erei~~Lv~~iie~QlkKlelKLk~feeLE~~le~Er~~Le~~r~~l~~dRl~~ 443 (466)
-+++++-....++.|-+-.+..++++.+ -|++||+++.+..+..+..+|..
T Consensus 506 l~~~~~~~~~~~~~~~~~~~e~~~ql~~---kme~~~~~~~~e~~~~~~~~~~~ 556 (592)
T 1f5n_A 506 LHEMQRKNEQMMEQKERSYQEHLKQLTE---KMENDRVQLLKEQERTLALKLQE 556 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566777777777777766554 78899998888888888777765
No 81
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=48.61 E-value=16 Score=27.17 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 012334 218 EKETLQLLEAIMHFGDDWRKVAQHVSG 244 (466)
Q Consensus 218 ~~E~l~LLEaIe~yg~nW~~IA~~Vgt 244 (466)
.-|-..+.++++.++||+.++|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 347788999999999999999999995
No 82
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=48.49 E-value=21 Score=27.50 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCC
Q 012334 82 RDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (466)
Q Consensus 82 RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (466)
|..|+.....++ .+|+.+.-+.+.-....+.|....|+..|+|-..
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 677888776653 5899999888887899999999999999999743
No 83
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=46.34 E-value=1.2e+02 Score=24.63 Aligned_cols=55 Identities=11% Similarity=0.160 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 012334 376 ARASVDASSLIEKEELDVEKAISGIVEVQMKEIQDKIIRFESLDLQMEEEWKQLEQVKN 434 (466)
Q Consensus 376 ~aAa~kAk~la~~EErei~~Lv~~iie~QlkKlelKLk~feeLE~~le~Er~~Le~~r~ 434 (466)
..||.-...+..+|..++..|-..+ +..|+...+.+++||..+++-++.+.....
T Consensus 25 rEaA~Ee~YfrqkekEqL~~LKkkl----~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 25 REQAEEERYFRARAKEQLAALKKHK----ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455556666677777777765555 566777778888888888888777766554
No 84
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.42 E-value=27 Score=30.19 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCcceeHHHHHhhcc-----chHHHHHHHHHhhhhcccccC
Q 012334 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (466)
Q Consensus 82 RN~ii~~yr~np~~yLt~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy 128 (466)
|-.|++..... ...+|+.+.-..|. -+...+.|...+|...|||.-
T Consensus 24 R~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 24 RHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 67788877664 67899999877773 378999999999999999973
No 85
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=43.92 E-value=28 Score=29.94 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhCCCcceeHHHHHhhcc-----chHHHHHHHHHhhhhccccc
Q 012334 77 VYRYYRDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLIN 127 (466)
Q Consensus 77 ~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlIN 127 (466)
+.-.-|..|++....+ ...+|+.+.-..|. -+...+.|...+|..-|||.
T Consensus 11 r~T~qR~~Il~~L~~~-~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 11 RATRQRAAVSAALQEV-EEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHHHHHHTTC-SSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred ccCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4456688899977665 46999999877763 37899999999999999996
No 86
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=39.73 E-value=38 Score=32.64 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=21.3
Q ss_pred CHHHHHHHhCCCCHHHHHHHHhc
Q 012334 234 DWRKVAQHVSGKSEKDCITHFIK 256 (466)
Q Consensus 234 nW~~IA~~VgtKT~~eCi~hflq 256 (466)
-|..||++..++|....+.+|..
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrK 195 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRK 195 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHH
Confidence 59999999999999999999974
No 87
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.35 E-value=28 Score=30.20 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHhhcc-----chHHHHHHHHHhhhhcccccC
Q 012334 71 PSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (466)
Q Consensus 71 ~~ktp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy 128 (466)
--.||. |..|++....++ .+|+.+.-..|. -+...+.|...+|..-|||.=
T Consensus 15 ~r~T~q-----R~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 15 YRLTPQ-----RQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp CCCCHH-----HHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCcCHH-----HHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 344665 667777766654 899999866653 378999999999999999963
No 88
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=38.43 E-value=28 Score=34.00 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHHHh--CCCCHHHHH
Q 012334 213 RSDWTEKETLQLLEAIMHFG---DDWRKVAQHV--SGKSEKDCI 251 (466)
Q Consensus 213 ~~~WT~~E~l~LLEaIe~yg---~nW~~IA~~V--gtKT~~eCi 251 (466)
...||+.|...|+-++.+|| +.|+.|+.-- ..|+.+...
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~ 46 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYG 46 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHH
Confidence 46899999999999999999 6899998763 246655443
No 89
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=37.33 E-value=56 Score=27.58 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcce-eHHHHHhhccchHHHHHHHHHhhhhcccccCCCC
Q 012334 76 RVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 76 ~~Y~~~RN~ii~~yr~np~~yL-t~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
++|-.||+.|++ =...|...| |..+.-..+.---..+.+.+.-|+.-|||-....
T Consensus 18 QI~~~i~~~I~~-G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 18 QIVQKIKEQVVK-GVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp HHHHHHHHHHHH-TSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHc-CCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 566666666665 334689999 8888777888889999999999999999975443
No 90
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=36.10 E-value=61 Score=26.97 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCC
Q 012334 82 RDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (466)
Q Consensus 82 RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (466)
+-.|+..-..++..++|+.+.-..+.-+...+.|...-|+..|+|--.
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 334555444555545999999988988999999999999999999754
No 91
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=35.98 E-value=47 Score=27.33 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHhhccchHHHHHHHHHhhhhcccccCCCC
Q 012334 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-t~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
-++|-.||+.|++- ...|...| |..+..+.+.---..+.+...-|+..|+|-....
T Consensus 12 ~~i~~~i~~~I~~g-~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~ 68 (113)
T 3tqn_A 12 QQLRDKIVEAIIDG-SYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRG 68 (113)
T ss_dssp HHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 45666777766652 34578889 8988888888788999999999999999975433
No 92
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.83 E-value=41 Score=29.79 Aligned_cols=46 Identities=13% Similarity=0.246 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCcceeHHHHHhhcc-------chHHHHHHHHHhhhhcccccC
Q 012334 82 RDSIVKHYRENPSRKITFTDVRRTLV-------GDVGSIRRVFDFLETWGLINY 128 (466)
Q Consensus 82 RN~ii~~yr~np~~yLt~t~~r~~l~-------gDv~~i~Rvh~FLe~wGlINy 128 (466)
|-.|++....+ ...+|+.+.-..|. -+...+.|...+|..-|||.=
T Consensus 35 R~~IL~~L~~~-~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 35 REVLLKTLYHS-DTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHSC-CSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 77788876665 48999999865553 267899999999999999963
No 93
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=33.04 E-value=51 Score=27.78 Aligned_cols=54 Identities=6% Similarity=0.116 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHhhccchHHHHHHHHHhhhhcccccCC
Q 012334 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (466)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-t~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (466)
-.+|-.||+.|+.- ...|...| +..+..+.+.---..+.+.+.-|+..|||-..
T Consensus 14 ~~i~~~l~~~I~~g-~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 14 LQLVDRIKNEVATD-VLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp HHHHHHHHHHHHTT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35677777777653 34578899 99998888888889999999999999999543
No 94
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=32.20 E-value=77 Score=25.39 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCCCCCccccc
Q 012334 80 YYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKW 137 (466)
Q Consensus 80 ~~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~kP~~~ 137 (466)
..+..||..-+.++ +|+.+.-+.|.-...++.|...=|++-|+|-+....+| .|
T Consensus 17 ~~~~~IL~lL~~~g---~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP-~W 70 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG---ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPP-RW 70 (82)
T ss_dssp HHHHHHHHHHSSST---EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSC-EE
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCC-cc
Confidence 45778887666665 99999999999888999999999999999999855444 44
No 95
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=31.85 E-value=50 Score=28.04 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHhhccchHHHHHHHHHhhhhcccccCCC
Q 012334 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (466)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-t~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 130 (466)
-.+|-.||+.|+.- ...|...| |..+.-..+.---..+.+...-|+..|||-...
T Consensus 7 ~~i~~~i~~~I~~g-~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 7 KQIASLIEDSIVDG-TLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp HHHHHHHHHHHHTT-SSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEET
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 46788888888763 45688999 898988888888899999999999999996543
No 96
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=30.38 E-value=80 Score=24.37 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=32.6
Q ss_pred cceeHHHHHhhccchHHHHHHHHHhhhhcccccCCCC
Q 012334 95 RKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 95 ~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
..+|+++.-+.+.-+...+.|+..-|+..|+|.....
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 4599999988888899999999999999999986544
No 97
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=30.16 E-value=59 Score=26.79 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.2
Q ss_pred HhCCCcceeHHHHHh-hccchHHHHHHHHHhhhhccccc
Q 012334 90 RENPSRKITFTDVRR-TLVGDVGSIRRVFDFLETWGLIN 127 (466)
Q Consensus 90 r~np~~yLt~t~~r~-~l~gDv~~i~Rvh~FLe~wGlIN 127 (466)
..|| +.|.++... .+.-|...+.|-...|++-|||=
T Consensus 26 ~~~~--~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 26 AKKD--FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHST--TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHCC--CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 3445 999999999 88889999999999999999985
No 98
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.64 E-value=1.5e+02 Score=30.78 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012334 417 SLDLQMEEEWKQLEQVKNLLFVDQLSV 443 (466)
Q Consensus 417 eLE~~le~Er~~Le~~r~~l~~dRl~~ 443 (466)
+||..++..++++++.++++-.-+..+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 555555555555555555544444333
No 99
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=27.59 E-value=83 Score=25.62 Aligned_cols=40 Identities=3% Similarity=0.108 Sum_probs=32.2
Q ss_pred HHHHhCCCcceeHHHHHhhccch----HHHHHHHHHhhhhcccccCC
Q 012334 87 KHYRENPSRKITFTDVRRTLVGD----VGSIRRVFDFLETWGLINYF 129 (466)
Q Consensus 87 ~~yr~np~~yLt~t~~r~~l~gD----v~~i~Rvh~FLe~wGlINy~ 129 (466)
-.|... .+|+.+..+.|..| ...+.|+.+.|+.-|||--.
T Consensus 43 ~L~~~~---~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 43 VIWSLG---EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp HHHHHS---CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHhCC---CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 346543 58999999888754 68999999999999999643
No 100
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=26.94 E-value=94 Score=24.00 Aligned_cols=59 Identities=24% Similarity=0.219 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCC-CcceeHHHHHhhccchHHHHHHHHHhhhhcccccCCCCCccccc
Q 012334 78 YRYYRDSIVKHYRENP-SRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKW 137 (466)
Q Consensus 78 Y~~~RN~ii~~yr~np-~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~kP~~~ 137 (466)
.-+....|+...+.|+ ..++|+.+.-+.|.-+...|.|...=|++-|+|-... .+|..|
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g-~~~~~W 71 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-GTPPLW 71 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC-SSSCEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CCCCce
Confidence 3344677888888887 7899999999999888899999999999999996543 345444
No 101
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=26.92 E-value=38 Score=27.87 Aligned_cols=35 Identities=23% Similarity=0.569 Sum_probs=24.5
Q ss_pred cccccccccCCCCccc-----cccccccCCCcccchhhhc
Q 012334 156 KETSKRLCNGCKTLCT-----IACFACDKYDLTLCARCYV 190 (466)
Q Consensus 156 ~~~~k~~C~~C~~~~~-----~~~~~c~k~d~~lC~~Cf~ 190 (466)
.+..-..|..|+.+++ .....|....|.+|..||.
T Consensus 12 ~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE 51 (93)
T 1weo_A 12 KNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE 51 (93)
T ss_dssp SCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH
T ss_pred cccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHH
Confidence 3334468999998865 2345566666889999985
No 102
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=26.83 E-value=53 Score=26.08 Aligned_cols=29 Identities=3% Similarity=-0.106 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 012334 216 WTEKETLQLLEAIMHFGDDWRKVAQHVSG 244 (466)
Q Consensus 216 WT~~E~l~LLEaIe~yg~nW~~IA~~Vgt 244 (466)
...-|...+.++++.++||..+.|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 44557788899999999999999999984
No 103
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=26.76 E-value=1e+02 Score=24.34 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCCC
Q 012334 81 YRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (466)
Q Consensus 81 ~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 130 (466)
.|-.|+...... .+|+++..+.+.-+...+.|...-|+..|||....
T Consensus 22 ~r~~IL~~L~~~---~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~ 68 (114)
T 2oqg_A 22 TRWEILTELGRA---DQSASSLATRLPVSRQAIAKHLNALQACGLVESVK 68 (114)
T ss_dssp HHHHHHHHHHHS---CBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEe
Confidence 466677765332 38999998888889999999999999999997543
No 104
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=26.66 E-value=72 Score=26.86 Aligned_cols=40 Identities=10% Similarity=-0.029 Sum_probs=34.5
Q ss_pred CCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCCCC
Q 012334 92 NPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 92 np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
.+..++|..+..+.+.-+...+.|+.+.|+.-|+|-...+
T Consensus 47 ~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 47 EGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp TTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred cCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 3556689999988898899999999999999999987665
No 105
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=26.24 E-value=1.1e+02 Score=25.11 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCC
Q 012334 74 NPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (466)
Q Consensus 74 tp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (466)
|+..|..++ .|+.... ....+|+++.-+.+.-+..++.|+..-|+..|||...
T Consensus 12 t~~~~~~L~-~l~~l~~--~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 12 SRREFSYLL-TIKRYND--SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp CHHHHHHHH-HHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHH-HHHHHHh--cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec
Confidence 555555555 3444333 3567999999989988999999999999999999864
No 106
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=26.02 E-value=70 Score=26.77 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHhhccchHHHHHHHHHhhhhcccccCCC
Q 012334 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (466)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-t~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 130 (466)
-++|-.||+.|++ -..-|...| |..+..+.+.--...+.+.+.-|+.-|+|--..
T Consensus 16 ~~i~~~i~~~I~~-g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 16 SQISDWMKKQMIT-GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp HHHHHHHHHHHHT-TSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHh-CCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 3566666666665 233578888 588888888878899999999999999996543
No 107
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=25.52 E-value=1e+02 Score=24.44 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=36.7
Q ss_pred ChHHHHHH----HHHHHHHHHhCCCcceeHHHHHhhcc-----c-------hHHHHHHHHHhhhhcccccCCCC
Q 012334 74 NPRVYRYY----RDSIVKHYRENPSRKITFTDVRRTLV-----G-------DVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 74 tp~~Y~~~----RN~ii~~yr~np~~yLt~t~~r~~l~-----g-------Dv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
.+..+..| +++|+..+-.-|-..||..+++.-+. | -...|..++.|.-.||+|...+.
T Consensus 23 ~~~T~~~y~~~l~~~i~~~lg~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~ 96 (118)
T 2kj8_A 23 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNPA 96 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSBTTSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTSCSCCSH
T ss_pred CHHHHHHHHHHHHHHhhHHhcCCcHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCcccCcH
Confidence 45444444 44555655556778899888876442 1 12456677888888999975443
No 108
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.50 E-value=1.2e+02 Score=27.22 Aligned_cols=55 Identities=16% Similarity=0.046 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcceeHHHHHhhcc--c-hHHHHHHHHHhhhhcccccCCCC
Q 012334 74 NPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLV--G-DVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 74 tp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~--g-Dv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
....|...++..+. |.. .+.-|..+.++.|. | +-..|-.|.++|...|+||=..+
T Consensus 13 ~~~~~~~a~~~Al~-~Ls--~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rf 70 (177)
T 3e3v_A 13 LADDISKGYNAALN-YLS--YQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNY 70 (177)
T ss_dssp CHHHHHHHHHHHHH-HHH--SSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHH-Hhc--cccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 35778888888876 444 56778889998886 4 78899999999999999995444
No 109
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.48 E-value=1.3e+02 Score=23.52 Aligned_cols=55 Identities=7% Similarity=0.081 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCC
Q 012334 75 PRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (466)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (466)
..++.+|-++|-.....+-..+.|+.+.-..+.--..++.|=...|+.-|+|--.
T Consensus 3 ~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 3 ESIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp CTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 3466667777666544432456899998877765577899999999999999643
No 110
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=25.47 E-value=31 Score=32.16 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=49.1
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCCC
Q 012334 72 SKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (466)
Q Consensus 72 ~ktp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 130 (466)
+..+.+|-.||+.|+.- ...|...|+..+.-..+.---..|.+-..-|+.-|||-...
T Consensus 26 s~~~~v~~~L~~~I~~g-~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDG-SLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp GHHHHHHHHHHHHHHTS-SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccHHHHHHHHHHHHHhC-CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 44577999999999984 44689999999988888888899999999999999997543
No 111
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=25.12 E-value=1e+02 Score=24.23 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCcceeHHHHHhhccc-hHHHHHHHHHhhhhccccc
Q 012334 80 YYRDSIVKHYRENPSRKITFTDVRRTLVG-DVGSIRRVFDFLETWGLIN 127 (466)
Q Consensus 80 ~~RN~ii~~yr~np~~yLt~t~~r~~l~g-Dv~~i~Rvh~FLe~wGlIN 127 (466)
-.++ .|+.|...|...+++.++-..|.. ..-=|.-|..-||.-|||-
T Consensus 15 lt~k-Fi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~ 62 (76)
T 1cf7_A 15 LTTK-FVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIE 62 (76)
T ss_dssp HHHH-HHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEE
T ss_pred HHHH-HHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhccee
Confidence 3444 456789999999999999988987 6655666666789999884
No 112
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=25.09 E-value=95 Score=25.26 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCCCC
Q 012334 86 VKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 86 i~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
+..-..+|...+|+++..+.+.-+..++.|+.+=|+..|||--..+
T Consensus 37 L~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~ 82 (139)
T 3eco_A 37 LGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVD 82 (139)
T ss_dssp HHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCC
Confidence 3333446667899999998898899999999999999999986554
No 113
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=24.97 E-value=30 Score=27.70 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcce-eHHHHHhhccchHHHHHHHHHhhhhcccccCC
Q 012334 73 KNPRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (466)
Q Consensus 73 ktp~~Y~~~RN~ii~~yr~np~~yL-t~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (466)
..-.+|-.+|..|+.. ...|...| |..+..+.+.--...+.+...-|+..|||-..
T Consensus 12 ~~~~l~~~i~~~I~~~-~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 12 GYADVATHFRTLIKSG-ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp CHHHHHHHHHHHTTTT-SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHHHhC-CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3456777777777762 23467888 99998888887889999999999999999643
No 114
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=24.82 E-value=93 Score=25.25 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=35.0
Q ss_pred hCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCCCC
Q 012334 91 ENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 91 ~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
.++...+|+++..+.+.-+...+.|+..=|+..|||--..+
T Consensus 45 ~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~ 85 (141)
T 3bro_A 45 RNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp HTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCC
Confidence 34555799999998898899999999999999999976544
No 115
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=24.50 E-value=1.1e+02 Score=25.28 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccc
Q 012334 74 NPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (466)
Q Consensus 74 tp~~Y~~~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 126 (466)
.++.|-++++.|.+....+ ..+|+.+.|..+.----...=|..||++.|+.
T Consensus 60 ~~~~~~~~~~~l~~~~~~~--~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 60 RNDRIVEFANMIRDLDQEC--GSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EHHHHHHHHHHHHHHHHHH--SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHHHHHHC--CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 4899999999999988875 78999999988853333444688999999874
No 116
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=24.10 E-value=1.2e+02 Score=23.24 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCCCC
Q 012334 81 YRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 81 ~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
.|-.|+..... ...+|+++..+.+.-+...+.|...-|+..|+|....+
T Consensus 25 ~~~~il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 25 KRLLILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 45567754433 45799999998898899999999999999999986544
No 117
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=24.07 E-value=1.2e+02 Score=24.45 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhccccc
Q 012334 84 SIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (466)
Q Consensus 84 ~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 127 (466)
.|++.-+. ...+|+++.-+.|.-....|.|..+.|++.|+|-
T Consensus 6 ~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 6 EVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34443344 5789999999999889999999999999999763
No 118
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.74 E-value=1.1e+02 Score=24.01 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCC-CcceeHHHHHhhccchHHHHHHHHHhhhhcccccCCCCCccccc
Q 012334 82 RDSIVKHYRENP-SRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKW 137 (466)
Q Consensus 82 RN~ii~~yr~np-~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~kP~~~ 137 (466)
...|++..+.|+ ..++|+.+.-+.|.-.-..|.|...=|+.-|+|-... .+|..|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g-~~~~~W 67 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-GTPPLW 67 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES-SSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CCCCee
Confidence 344555555655 8899999999889888889999999999999997643 445444
No 119
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.28 E-value=53 Score=26.04 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 012334 218 EKETLQLLEAIMHFGDDWRKVAQHVSG 244 (466)
Q Consensus 218 ~~E~l~LLEaIe~yg~nW~~IA~~Vgt 244 (466)
.-|...|.++++.++||..++|+.+|-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LGI 76 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLGW 76 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 457788999999999999999999994
No 120
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=23.15 E-value=55 Score=26.72 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=43.4
Q ss_pred hHHHHHH--HHHHHHHHHhCCCcce-eHHHHHhhccchHHHHHHHHHhhhhcccccCCC
Q 012334 75 PRVYRYY--RDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (466)
Q Consensus 75 p~~Y~~~--RN~ii~~yr~np~~yL-t~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 130 (466)
..+|..+ |+.|+..| .|...| |..+.-+.+.--...+.+...-|+.-|||-...
T Consensus 21 ~~~y~~l~i~~~I~~~l--~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 21 SLSYSELEAIEHIFEEL--DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TSCHHHHHHHHHHTTSS--BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHhhh--cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3578888 99999433 467777 999988888778889999999999999996543
No 121
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.36 E-value=2.7e+02 Score=23.86 Aligned_cols=30 Identities=3% Similarity=-0.002 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 012334 400 IVEVQMKEIQDKIIRFESLDLQMEEEWKQL 429 (466)
Q Consensus 400 iie~QlkKlelKLk~feeLE~~le~Er~~L 429 (466)
=|..+|+.||.-+..+...|..+=.+++++
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qrynqeka~ 35 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEARFNEERAQ 35 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888999999988888887765555543
No 122
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=22.08 E-value=1.2e+02 Score=23.60 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccc
Q 012334 84 SIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (466)
Q Consensus 84 ~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 126 (466)
.|++.-+. ...+++++.-+.|.-....|.|-.+.|++.|+|
T Consensus 6 ~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 6 QVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34554444 578999999999999999999999999999987
No 123
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.02 E-value=2e+02 Score=22.58 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHH
Q 012334 400 IVEVQMKEIQDKIIRFE----SLDLQMEEEWKQLEQVKNL 435 (466)
Q Consensus 400 iie~QlkKlelKLk~fe----eLE~~le~Er~~Le~~r~~ 435 (466)
-++..|..||.||.|.+ +|-..+-+-.+++++++.+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~q 50 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAEL 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999998864 4555555555555555443
No 124
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=21.83 E-value=48 Score=25.97 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhhcccccCCCC
Q 012334 110 VGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 110 v~~i~Rvh~FLe~wGlINy~~~ 131 (466)
...+..++.|.-.||+|...+.
T Consensus 76 ~~~l~~~~~~A~~~~~i~~NP~ 97 (116)
T 2kj5_A 76 LRWLKRMFNYAIKRHIIEYNPA 97 (116)
T ss_dssp HHHHHHHHHHHHHTTSCSSCGG
T ss_pred HHHHHHHHHHHHHcCccccCch
Confidence 4567788889999999975543
No 125
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=21.53 E-value=42 Score=27.06 Aligned_cols=32 Identities=31% Similarity=0.685 Sum_probs=25.9
Q ss_pred cccccCCCCccccccccccCCCcccchhhhcc
Q 012334 160 KRLCNGCKTLCTIACFACDKYDLTLCARCYVR 191 (466)
Q Consensus 160 k~~C~~C~~~~~~~~~~c~k~d~~lC~~Cf~~ 191 (466)
.+.|+.|+.......|.|...++.+-..|...
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~ 78 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCALN 78 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHC
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCC
Confidence 46899999987666788888888888888753
No 126
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=21.16 E-value=1.2e+02 Score=23.58 Aligned_cols=34 Identities=3% Similarity=0.047 Sum_probs=31.2
Q ss_pred CCcceeHHHHHhhccchHHHHHHHHHhhhhcccc
Q 012334 93 PSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (466)
Q Consensus 93 p~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 126 (466)
+...+|.++.-+.+.-+-.++.|+..=|+..|||
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 4556999999989988999999999999999999
No 127
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=20.71 E-value=1.5e+02 Score=23.09 Aligned_cols=45 Identities=16% Similarity=0.125 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCC
Q 012334 81 YRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (466)
Q Consensus 81 ~RN~ii~~yr~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (466)
.|-.|+..- . ..+|+++..+.+.-...++.|...-|+..|||...
T Consensus 32 ~r~~Il~~L-~---~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 32 VRRKILRML-D---KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHHHHHHHH-H---TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-c---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 355677655 3 34899998888877889999999999999999753
No 128
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=20.63 E-value=1.3e+02 Score=23.02 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=31.8
Q ss_pred ceeHHHHHhhccchHHHHHHHHHhhhhcccccCCCC
Q 012334 96 KITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 96 yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
.+|+++..+.+.-+...+.|+..-|+..|+|....+
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 489999998898899999999999999999986543
No 129
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.51 E-value=32 Score=22.19 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=15.2
Q ss_pred HHhhcChHHHHHHHHHHHHHh
Q 012334 321 LSALAGVEIAEVAARAAVTTL 341 (466)
Q Consensus 321 Las~V~P~VAaaAA~aAl~~l 341 (466)
+++...|.||+|+|-+-|+.|
T Consensus 7 ~as~faPGvaAAqAL~eIERL 27 (29)
T 1xnl_A 7 FASILAPGVAAAQALREIERL 27 (29)
T ss_dssp TTTSSSTTTHHHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHh
Confidence 367788999988776655544
No 130
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=20.42 E-value=98 Score=26.12 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=35.9
Q ss_pred hCCCcceeHHHHHhhccchHHHHHHHHHhhhhcccccCCCC
Q 012334 91 ENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (466)
Q Consensus 91 ~np~~yLt~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (466)
.++...+|.++.-+.+.-|-..+.|+.+=|+.-|||--..+
T Consensus 46 ~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~ 86 (147)
T 4b8x_A 46 FSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPN 86 (147)
T ss_dssp TSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeec
Confidence 35667899999988898899999999999999999986665
Done!