Query 012335
Match_columns 466
No_of_seqs 185 out of 1487
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 01:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02461 Probable pyruvate kin 100.0 5E-128 1E-132 1014.7 54.7 460 7-466 19-511 (511)
2 PLN02762 pyruvate kinase compl 100.0 3E-125 7E-130 993.2 53.2 435 8-465 24-508 (509)
3 PTZ00066 pyruvate kinase; Prov 100.0 5E-125 1E-129 991.0 53.5 438 7-465 36-512 (513)
4 PLN02765 pyruvate kinase 100.0 5E-124 1E-128 984.9 54.6 454 9-466 28-525 (526)
5 PRK09206 pyruvate kinase; Prov 100.0 2E-122 4E-127 967.6 52.8 436 8-465 1-470 (470)
6 COG0469 PykF Pyruvate kinase [ 100.0 5E-122 1E-126 958.7 50.4 437 7-465 3-477 (477)
7 PRK06247 pyruvate kinase; Prov 100.0 5E-121 1E-125 955.7 52.0 433 7-466 3-471 (476)
8 PRK06354 pyruvate kinase; Prov 100.0 5E-119 1E-123 966.1 53.2 436 8-465 7-478 (590)
9 cd00288 Pyruvate_Kinase Pyruva 100.0 9E-119 2E-123 945.2 53.0 441 8-465 1-480 (480)
10 PRK05826 pyruvate kinase; Prov 100.0 5E-116 1E-120 920.9 51.0 425 7-454 2-458 (465)
11 PLN02623 pyruvate kinase 100.0 1E-114 2E-119 920.1 53.7 433 7-465 108-579 (581)
12 PTZ00300 pyruvate kinase; Prov 100.0 2E-111 5E-116 880.9 48.8 415 35-466 1-454 (454)
13 KOG2323 Pyruvate kinase [Carbo 100.0 7E-112 2E-116 876.8 43.2 443 7-465 19-501 (501)
14 TIGR01064 pyruv_kin pyruvate k 100.0 3E-110 6E-115 883.9 50.5 432 9-462 1-473 (473)
15 PRK06739 pyruvate kinase; Vali 100.0 6.3E-96 1E-100 743.1 35.3 302 10-320 2-315 (352)
16 PF00224 PK: Pyruvate kinase, 100.0 1.4E-96 3E-101 754.2 30.0 310 8-320 1-325 (348)
17 PRK14725 pyruvate kinase; Prov 100.0 3.9E-88 8.5E-93 716.7 37.0 305 3-311 133-566 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 1.5E-85 3.3E-90 692.6 36.2 304 3-310 127-448 (493)
19 PF02887 PK_C: Pyruvate kinase 100.0 1.1E-27 2.4E-32 209.2 13.9 112 335-464 1-117 (117)
20 PRK10558 alpha-dehydro-beta-de 99.5 7.6E-14 1.6E-18 137.9 9.0 107 178-285 75-215 (256)
21 TIGR03239 GarL 2-dehydro-3-deo 99.5 9.2E-14 2E-18 136.7 9.3 106 179-285 69-208 (249)
22 PRK10128 2-keto-3-deoxy-L-rham 99.4 1.3E-12 2.7E-17 129.7 9.7 104 181-285 77-215 (267)
23 PF03328 HpcH_HpaI: HpcH/HpaI 99.3 2.1E-12 4.6E-17 124.7 6.7 103 182-286 73-190 (221)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.3 7.5E-12 1.6E-16 123.3 8.6 102 183-285 73-209 (249)
25 COG3836 HpcH 2,4-dihydroxyhept 99.3 1E-11 2.2E-16 118.8 8.6 107 178-285 73-214 (255)
26 TIGR01588 citE citrate lyase, 99.1 3.2E-10 6.8E-15 114.1 9.3 103 182-285 73-191 (288)
27 TIGR01418 PEP_synth phosphoeno 99.0 5.6E-10 1.2E-14 125.9 8.3 113 177-290 609-745 (782)
28 PRK06464 phosphoenolpyruvate s 99.0 8.3E-10 1.8E-14 124.6 8.3 112 178-290 617-752 (795)
29 TIGR01417 PTS_I_fam phosphoeno 98.9 2.3E-09 4.9E-14 117.1 8.8 113 177-290 366-505 (565)
30 PRK11177 phosphoenolpyruvate-p 98.9 4E-09 8.7E-14 115.1 9.8 113 177-290 367-506 (575)
31 COG2301 CitE Citrate lyase bet 98.4 3.3E-07 7.1E-12 91.5 5.5 104 181-285 67-183 (283)
32 TIGR01344 malate_syn_A malate 98.3 1.1E-05 2.4E-10 86.4 14.6 211 7-285 65-306 (511)
33 cd00727 malate_synt_A Malate s 98.3 1.4E-05 2.9E-10 85.8 15.0 210 7-285 65-305 (511)
34 PRK09255 malate synthase; Vali 98.2 2.7E-05 5.8E-10 84.0 13.7 113 170-285 183-326 (531)
35 PF02896 PEP-utilizers_C: PEP- 98.0 2.7E-05 5.8E-10 78.6 9.2 113 177-290 119-258 (293)
36 cd00480 malate_synt Malate syn 98.0 0.00027 5.9E-09 76.4 16.8 91 194-284 183-304 (511)
37 PRK11061 fused phosphoenolpyru 97.1 0.0011 2.3E-08 75.3 7.5 113 177-290 532-672 (748)
38 PLN02626 malate synthase 96.8 0.0027 5.9E-08 68.5 7.5 89 197-285 213-332 (551)
39 COG1080 PtsA Phosphoenolpyruva 96.4 0.014 2.9E-07 63.5 9.0 111 177-289 368-506 (574)
40 TIGR01828 pyru_phos_dikin pyru 96.4 0.0089 1.9E-07 68.7 8.1 114 177-290 670-830 (856)
41 TIGR02751 PEPCase_arch phospho 96.0 0.029 6.3E-07 60.4 9.2 91 195-285 122-247 (506)
42 PRK13655 phosphoenolpyruvate c 95.2 0.072 1.6E-06 57.4 8.6 93 193-285 119-239 (494)
43 PRK09279 pyruvate phosphate di 95.0 0.081 1.8E-06 61.0 8.8 115 176-290 675-836 (879)
44 PRK00009 phosphoenolpyruvate c 94.4 0.21 4.5E-06 58.0 10.0 111 194-304 485-623 (911)
45 COG3605 PtsP Signal transducti 93.5 0.17 3.8E-06 55.1 6.9 116 175-290 538-680 (756)
46 cd00958 DhnA Class I fructose- 93.5 1.5 3.2E-05 42.5 13.0 74 180-259 141-221 (235)
47 TIGR01949 AroFGH_arch predicte 92.7 3 6.4E-05 41.3 13.9 66 189-259 163-234 (258)
48 PTZ00398 phosphoenolpyruvate c 92.6 0.51 1.1E-05 55.2 9.5 108 196-303 546-679 (974)
49 PRK08649 inosine 5-monophospha 90.7 1.7 3.7E-05 45.5 10.2 63 189-255 148-218 (368)
50 COG1751 Uncharacterized conser 89.9 3 6.4E-05 38.3 9.5 47 333-379 10-57 (186)
51 cd00945 Aldolase_Class_I Class 87.7 3.3 7.1E-05 38.1 8.8 97 180-285 11-118 (201)
52 PTZ00005 phosphoglycerate kina 87.0 7.9 0.00017 41.3 12.0 210 24-290 45-287 (417)
53 PF00311 PEPcase: Phosphoenolp 85.7 2.2 4.7E-05 49.2 7.5 107 194-300 362-496 (794)
54 PRK00694 4-hydroxy-3-methylbut 85.4 15 0.00032 40.6 13.3 155 181-371 45-221 (606)
55 PRK07226 fructose-bisphosphate 84.9 26 0.00056 34.9 14.0 68 189-259 167-238 (267)
56 PF14010 PEPcase_2: Phosphoeno 83.8 2.6 5.6E-05 45.6 6.6 92 193-284 118-244 (491)
57 COG0826 Collagenase and relate 83.8 4.2 9E-05 42.3 8.0 92 182-290 14-123 (347)
58 PF00478 IMPDH: IMP dehydrogen 83.3 2.4 5.3E-05 44.1 6.1 51 9-59 95-145 (352)
59 PRK13397 3-deoxy-7-phosphohept 83.1 12 0.00026 37.3 10.5 78 209-313 67-144 (250)
60 PRK00286 xseA exodeoxyribonucl 82.9 14 0.00031 39.3 12.0 158 117-303 63-253 (438)
61 COG2352 Ppc Phosphoenolpyruvat 81.7 4.1 8.8E-05 46.5 7.3 86 199-284 489-600 (910)
62 TIGR01361 DAHP_synth_Bsub phos 81.3 5 0.00011 40.0 7.3 80 207-313 75-154 (260)
63 TIGR01304 IMP_DH_rel_2 IMP deh 81.3 7.8 0.00017 40.7 8.9 63 189-255 149-219 (369)
64 PRK15452 putative protease; Pr 80.4 5.1 0.00011 43.1 7.4 110 182-308 11-153 (443)
65 PF03437 BtpA: BtpA family; I 80.0 6.7 0.00015 39.1 7.6 76 192-271 169-251 (254)
66 cd00381 IMPDH IMPDH: The catal 79.8 16 0.00034 37.6 10.6 103 181-290 93-207 (325)
67 cd00381 IMPDH IMPDH: The catal 78.6 4 8.7E-05 42.0 5.8 47 13-59 85-131 (325)
68 TIGR00126 deoC deoxyribose-pho 78.6 20 0.00044 34.6 10.3 58 177-240 13-70 (211)
69 PF04551 GcpE: GcpE protein; 78.3 6.1 0.00013 41.0 6.9 99 184-287 34-138 (359)
70 PRK15447 putative protease; Pr 77.9 10 0.00022 38.5 8.5 92 183-290 16-117 (301)
71 TIGR00612 ispG_gcpE 1-hydroxy- 77.5 15 0.00032 38.0 9.3 87 190-287 42-128 (346)
72 PRK02048 4-hydroxy-3-methylbut 77.5 12 0.00025 41.6 9.1 104 181-287 41-161 (611)
73 PF00899 ThiF: ThiF family; I 76.5 14 0.0003 32.4 8.0 68 209-287 57-124 (135)
74 PRK12595 bifunctional 3-deoxy- 74.9 10 0.00022 39.7 7.5 79 208-313 169-247 (360)
75 cd00377 ICL_PEPM Members of th 74.1 22 0.00048 35.0 9.4 85 189-285 91-201 (243)
76 TIGR00259 thylakoid_BtpA membr 73.9 15 0.00031 36.8 8.0 91 179-272 154-252 (257)
77 cd00954 NAL N-Acetylneuraminic 73.4 22 0.00047 35.7 9.4 94 189-286 28-134 (288)
78 PRK13125 trpA tryptophan synth 73.3 25 0.00053 34.5 9.5 105 189-310 95-206 (244)
79 COG0574 PpsA Phosphoenolpyruva 72.6 8.3 0.00018 44.2 6.8 92 198-290 597-703 (740)
80 PRK08417 dihydroorotase; Provi 72.0 1.3E+02 0.0029 31.4 16.8 178 177-382 42-228 (386)
81 TIGR00674 dapA dihydrodipicoli 70.7 25 0.00054 35.2 9.1 94 189-286 26-130 (285)
82 PRK03620 5-dehydro-4-deoxygluc 70.2 27 0.0006 35.3 9.3 94 189-286 35-138 (303)
83 TIGR01302 IMP_dehydrog inosine 69.6 8.3 0.00018 41.5 5.7 48 12-59 214-261 (450)
84 cd00408 DHDPS-like Dihydrodipi 69.1 32 0.00068 34.1 9.4 97 185-286 22-129 (281)
85 cd01485 E1-1_like Ubiquitin ac 68.0 27 0.00059 33.1 8.2 68 210-287 77-145 (198)
86 PLN02925 4-hydroxy-3-methylbut 67.9 27 0.00059 39.5 9.2 102 181-287 110-230 (733)
87 TIGR00237 xseA exodeoxyribonuc 67.6 18 0.00039 38.8 7.7 52 246-301 188-246 (432)
88 PF03102 NeuB: NeuB family; I 67.4 23 0.0005 35.0 7.8 80 208-311 56-135 (241)
89 cd00950 DHDPS Dihydrodipicolin 67.3 33 0.00072 34.1 9.1 95 189-287 28-133 (284)
90 PRK05096 guanosine 5'-monophos 67.0 12 0.00026 38.9 5.8 48 12-59 98-147 (346)
91 PF00478 IMPDH: IMP dehydrogen 66.6 27 0.00059 36.5 8.5 105 181-290 107-221 (352)
92 cd01492 Aos1_SUMO Ubiquitin ac 66.4 35 0.00076 32.4 8.6 66 210-287 77-142 (197)
93 cd00959 DeoC 2-deoxyribose-5-p 66.1 48 0.001 31.5 9.6 100 177-285 12-121 (203)
94 PRK05458 guanosine 5'-monophos 65.8 10 0.00022 39.1 5.2 44 16-59 91-136 (326)
95 PRK06843 inosine 5-monophospha 65.8 10 0.00022 40.3 5.2 50 10-59 141-190 (404)
96 TIGR00736 nifR3_rel_arch TIM-b 65.6 19 0.00041 35.3 6.8 72 186-261 152-229 (231)
97 cd00958 DhnA Class I fructose- 65.6 38 0.00083 32.6 9.0 98 177-285 16-127 (235)
98 TIGR02356 adenyl_thiF thiazole 65.5 29 0.00063 33.0 7.9 68 209-287 76-143 (202)
99 TIGR02320 PEP_mutase phosphoen 65.3 35 0.00075 34.6 8.8 64 189-252 99-189 (285)
100 PRK15452 putative protease; Pr 64.9 62 0.0013 34.9 11.1 41 23-63 270-310 (443)
101 PF07521 RMMBL: RNA-metabolisi 64.2 4.8 0.00011 28.7 1.8 24 35-58 7-31 (43)
102 PF01136 Peptidase_U32: Peptid 64.1 14 0.0003 35.6 5.5 41 23-63 158-198 (233)
103 PTZ00314 inosine-5'-monophosph 64.0 9.4 0.0002 41.6 4.8 45 15-59 234-278 (495)
104 TIGR01305 GMP_reduct_1 guanosi 63.7 15 0.00033 38.0 5.9 48 12-59 97-146 (343)
105 PRK07226 fructose-bisphosphate 63.5 49 0.0011 32.8 9.5 100 177-285 34-144 (267)
106 PRK13398 3-deoxy-7-phosphohept 63.2 26 0.00056 35.1 7.4 80 207-313 77-156 (266)
107 cd03174 DRE_TIM_metallolyase D 62.1 91 0.002 30.2 11.0 125 178-310 15-154 (265)
108 PF00582 Usp: Universal stress 62.1 20 0.00044 29.8 5.7 43 336-379 88-139 (140)
109 PRK07695 transcriptional regul 61.7 24 0.00053 33.2 6.6 34 26-59 19-52 (201)
110 PRK03170 dihydrodipicolinate s 61.7 44 0.00096 33.4 8.9 94 189-286 29-133 (292)
111 PRK04147 N-acetylneuraminate l 61.1 54 0.0012 32.9 9.4 98 185-286 27-136 (293)
112 PLN02274 inosine-5'-monophosph 60.6 15 0.00033 40.1 5.6 49 11-59 237-285 (505)
113 cd01487 E1_ThiF_like E1_ThiF_l 60.3 45 0.00098 30.9 8.0 67 210-287 54-121 (174)
114 TIGR03569 NeuB_NnaB N-acetylne 60.2 26 0.00056 36.3 6.9 81 179-310 73-154 (329)
115 cd04730 NPD_like 2-Nitropropan 60.0 60 0.0013 31.0 9.2 92 185-288 71-164 (236)
116 PRK13209 L-xylulose 5-phosphat 60.0 1.1E+02 0.0023 30.2 11.2 36 189-224 28-73 (283)
117 cd04501 SGNH_hydrolase_like_4 59.9 25 0.00053 32.0 6.2 40 248-287 64-103 (183)
118 PLN02417 dihydrodipicolinate s 59.8 50 0.0011 33.0 8.8 92 189-286 29-131 (280)
119 cd05565 PTS_IIB_lactose PTS_II 59.2 41 0.00088 28.6 6.8 68 204-286 11-78 (99)
120 PRK13210 putative L-xylulose 5 59.2 56 0.0012 32.0 9.0 119 186-310 21-171 (284)
121 PRK15005 universal stress prot 58.8 23 0.0005 30.7 5.6 40 339-379 96-143 (144)
122 TIGR01306 GMP_reduct_2 guanosi 58.7 20 0.00043 37.0 5.7 48 12-59 84-133 (321)
123 PRK00366 ispG 4-hydroxy-3-meth 58.5 79 0.0017 33.1 10.0 93 184-287 45-137 (360)
124 cd02808 GltS_FMN Glutamate syn 58.3 11 0.00023 39.9 3.8 111 184-317 227-361 (392)
125 PRK09856 fructoselysine 3-epim 58.0 92 0.002 30.4 10.3 120 189-310 20-170 (275)
126 TIGR02355 moeB molybdopterin s 57.9 49 0.0011 32.4 8.2 68 209-287 79-146 (240)
127 TIGR03151 enACPred_II putative 57.7 83 0.0018 32.1 10.1 93 185-290 78-171 (307)
128 cd00951 KDGDH 5-dehydro-4-deox 57.6 62 0.0013 32.5 9.1 93 189-287 28-132 (289)
129 PF01274 Malate_synthase: Mala 57.5 40 0.00086 37.2 8.1 88 195-284 203-323 (526)
130 KOG2178 Predicted sugar kinase 56.9 22 0.00049 37.4 5.8 87 348-454 283-375 (409)
131 PTZ00314 inosine-5'-monophosph 56.3 62 0.0014 35.3 9.4 112 181-310 240-362 (495)
132 TIGR00853 pts-lac PTS system, 56.2 52 0.0011 27.5 7.0 62 209-285 19-80 (95)
133 cd00757 ThiF_MoeB_HesA_family 55.4 54 0.0012 31.6 8.0 68 209-287 76-143 (228)
134 PRK08644 thiamine biosynthesis 55.1 59 0.0013 31.2 8.1 67 210-287 83-150 (212)
135 cd04724 Tryptophan_synthase_al 54.6 74 0.0016 31.1 8.9 93 183-286 16-135 (242)
136 PLN02274 inosine-5'-monophosph 54.3 76 0.0016 34.8 9.7 106 181-291 247-362 (505)
137 PRK05690 molybdopterin biosynt 53.5 56 0.0012 32.1 7.8 68 209-287 87-154 (245)
138 cd00952 CHBPH_aldolase Trans-o 52.7 86 0.0019 31.9 9.3 94 189-286 36-141 (309)
139 PRK02290 3-dehydroquinate synt 52.6 44 0.00096 34.7 7.0 82 180-267 12-109 (344)
140 TIGR00683 nanA N-acetylneurami 52.3 1.1E+02 0.0023 30.9 9.8 94 189-286 28-134 (290)
141 PF04028 DUF374: Domain of unk 52.0 67 0.0015 25.8 6.6 54 19-77 17-72 (74)
142 PF00701 DHDPS: Dihydrodipicol 52.0 1.1E+02 0.0024 30.5 9.8 100 184-287 24-134 (289)
143 PRK00561 ppnK inorganic polyph 51.7 19 0.00042 35.9 4.3 32 348-379 134-169 (259)
144 TIGR03586 PseI pseudaminic aci 51.1 50 0.0011 34.1 7.3 81 179-310 74-155 (327)
145 TIGR03249 KdgD 5-dehydro-4-deo 50.9 94 0.002 31.3 9.2 97 184-286 28-136 (296)
146 PRK06806 fructose-bisphosphate 50.9 45 0.00097 33.7 6.8 49 20-68 83-131 (281)
147 PRK15456 universal stress prot 50.4 34 0.00074 29.8 5.3 39 340-379 95-141 (142)
148 PLN02623 pyruvate kinase 50.1 2.3E+02 0.005 31.7 12.5 180 180-378 302-526 (581)
149 PF00834 Ribul_P_3_epim: Ribul 50.1 42 0.0009 32.2 6.1 58 191-251 76-133 (201)
150 PRK13396 3-deoxy-7-phosphohept 50.0 57 0.0012 34.1 7.5 79 209-314 153-231 (352)
151 COG0061 nadF NAD kinase [Coenz 49.4 19 0.00041 36.2 3.8 33 347-379 162-198 (281)
152 COG1440 CelA Phosphotransferas 48.4 96 0.0021 26.7 7.2 66 205-285 13-78 (102)
153 KOG2550 IMP dehydrogenase/GMP 48.3 31 0.00066 36.7 5.1 46 15-60 244-289 (503)
154 PF04055 Radical_SAM: Radical 47.3 1.5E+02 0.0031 25.5 8.9 39 10-48 76-114 (166)
155 COG4043 Preprotein translocase 47.1 26 0.00057 30.0 3.6 30 115-145 26-55 (111)
156 cd00564 TMP_TenI Thiamine mono 47.1 47 0.001 30.3 5.9 44 24-67 15-58 (196)
157 PF01487 DHquinase_I: Type I 3 47.1 88 0.0019 30.0 8.0 64 9-72 112-182 (224)
158 CHL00200 trpA tryptophan synth 46.9 1.2E+02 0.0027 30.2 9.1 120 189-320 113-234 (263)
159 PRK10737 FKBP-type peptidyl-pr 46.7 78 0.0017 30.3 7.3 87 91-182 51-145 (196)
160 PRK07428 nicotinate-nucleotide 46.4 52 0.0011 33.4 6.4 65 183-253 205-272 (288)
161 COG0821 gcpE 1-hydroxy-2-methy 46.2 3.7E+02 0.008 28.1 13.8 84 191-285 45-128 (361)
162 PRK04885 ppnK inorganic polyph 46.1 22 0.00047 35.6 3.6 32 348-379 145-180 (265)
163 PRK05567 inosine 5'-monophosph 45.8 48 0.001 36.0 6.5 50 10-59 216-265 (486)
164 cd07939 DRE_TIM_NifV Streptomy 45.7 3E+02 0.0066 27.0 12.7 124 178-311 16-148 (259)
165 COG0329 DapA Dihydrodipicolina 45.7 1.5E+02 0.0032 30.2 9.6 96 187-286 30-136 (299)
166 PRK03501 ppnK inorganic polyph 45.7 30 0.00066 34.6 4.6 32 348-379 146-181 (264)
167 TIGR01093 aroD 3-dehydroquinat 45.7 75 0.0016 30.7 7.3 65 8-72 116-187 (228)
168 cd00953 KDG_aldolase KDG (2-ke 45.5 1.5E+02 0.0034 29.5 9.7 90 189-286 27-127 (279)
169 cd04722 TIM_phosphate_binding 45.4 1.1E+02 0.0023 27.4 8.0 95 189-289 78-179 (200)
170 TIGR00742 yjbN tRNA dihydrouri 45.2 34 0.00074 35.1 5.0 65 189-258 148-229 (318)
171 PRK12475 thiamine/molybdopteri 45.2 91 0.002 32.3 8.2 67 209-286 81-147 (338)
172 PRK13802 bifunctional indole-3 45.2 1.7E+02 0.0037 33.5 10.8 45 335-379 363-409 (695)
173 cd02911 arch_FMN Archeal FMN-b 45.2 54 0.0012 32.0 6.2 62 186-254 156-222 (233)
174 TIGR00739 yajC preprotein tran 45.1 71 0.0015 26.3 5.9 42 117-161 31-72 (84)
175 PRK15118 universal stress glob 44.9 54 0.0012 28.5 5.7 39 340-379 93-137 (144)
176 TIGR02708 L_lactate_ox L-lacta 44.7 64 0.0014 33.9 6.9 96 184-284 239-350 (367)
177 PLN02591 tryptophan synthase 44.6 1.2E+02 0.0027 30.0 8.6 113 189-315 100-216 (250)
178 TIGR01303 IMP_DH_rel_1 IMP deh 44.6 35 0.00077 37.1 5.2 47 13-59 216-262 (475)
179 TIGR00259 thylakoid_BtpA membr 44.5 96 0.0021 31.0 7.8 95 185-289 93-209 (257)
180 PRK08197 threonine synthase; V 44.3 1.6E+02 0.0035 30.9 10.0 44 335-379 111-156 (394)
181 TIGR01949 AroFGH_arch predicte 44.3 91 0.002 30.7 7.8 100 177-285 31-141 (258)
182 PRK08385 nicotinate-nucleotide 44.1 35 0.00076 34.5 4.8 66 184-253 192-260 (278)
183 PRK08673 3-deoxy-7-phosphohept 43.9 86 0.0019 32.6 7.6 80 207-313 143-222 (335)
184 PF07679 I-set: Immunoglobulin 43.6 63 0.0014 25.3 5.4 69 88-158 8-78 (90)
185 PF00290 Trp_syntA: Tryptophan 43.6 2.3E+02 0.0051 28.3 10.4 123 189-324 109-233 (259)
186 PRK01222 N-(5'-phosphoribosyl) 43.3 1.2E+02 0.0025 29.2 8.1 91 184-289 66-163 (210)
187 PRK05597 molybdopterin biosynt 43.2 1.1E+02 0.0024 31.8 8.5 66 210-286 84-149 (355)
188 cd01568 QPRTase_NadC Quinolina 43.2 39 0.00085 33.8 5.0 62 184-252 191-255 (269)
189 PRK05848 nicotinate-nucleotide 43.0 61 0.0013 32.6 6.3 64 184-253 192-258 (273)
190 PRK09250 fructose-bisphosphate 42.8 1.5E+02 0.0032 31.0 9.1 115 159-285 59-197 (348)
191 PRK09590 celB cellobiose phosp 42.7 1.4E+02 0.003 25.6 7.6 77 208-303 16-94 (104)
192 PRK14852 hypothetical protein; 42.7 82 0.0018 37.4 8.0 71 209-288 387-457 (989)
193 TIGR00695 uxuA mannonate dehyd 42.5 52 0.0011 34.9 5.9 85 183-287 12-103 (394)
194 cd01987 USP_OKCHK USP domain i 42.2 60 0.0013 27.3 5.4 43 337-379 72-123 (124)
195 cd01483 E1_enzyme_family Super 42.2 1.4E+02 0.003 26.2 7.9 68 209-287 54-121 (143)
196 PRK07315 fructose-bisphosphate 42.2 70 0.0015 32.5 6.6 46 23-68 88-133 (293)
197 PF01645 Glu_synthase: Conserv 42.1 6.8 0.00015 41.1 -0.7 136 170-327 202-360 (368)
198 PRK15116 sulfur acceptor prote 42.0 42 0.0009 33.7 4.9 87 209-310 85-172 (268)
199 TIGR00010 hydrolase, TatD fami 41.8 2.2E+02 0.0047 27.0 9.9 102 183-288 16-129 (252)
200 PRK14024 phosphoribosyl isomer 41.7 42 0.00091 32.8 4.8 74 189-268 153-238 (241)
201 cd00755 YgdL_like Family of ac 41.6 56 0.0012 32.0 5.6 87 209-310 66-153 (231)
202 cd00429 RPE Ribulose-5-phospha 41.5 1.6E+02 0.0034 27.4 8.6 62 189-253 74-135 (211)
203 PRK01130 N-acetylmannosamine-6 41.4 1.6E+02 0.0034 28.1 8.7 95 185-288 79-181 (221)
204 PRK10411 DNA-binding transcrip 41.2 1.5E+02 0.0032 29.0 8.6 64 335-415 80-143 (240)
205 TIGR00693 thiE thiamine-phosph 41.1 91 0.002 28.9 6.9 46 24-69 16-61 (196)
206 cd00405 PRAI Phosphoribosylant 41.1 1.1E+02 0.0024 28.7 7.5 87 189-289 67-161 (203)
207 cd00564 TMP_TenI Thiamine mono 40.9 95 0.0021 28.2 6.9 65 185-256 106-182 (196)
208 PRK00043 thiE thiamine-phospha 40.4 94 0.002 29.0 6.9 44 24-67 24-67 (212)
209 PRK13111 trpA tryptophan synth 40.2 1.2E+02 0.0026 30.2 7.8 109 189-312 111-223 (258)
210 PRK00915 2-isopropylmalate syn 40.2 5.4E+02 0.012 28.2 14.3 125 178-311 22-158 (513)
211 PF11213 DUF3006: Protein of u 40.2 65 0.0014 25.4 4.9 42 94-139 8-50 (71)
212 PF09370 TIM-br_sig_trns: TIM- 40.2 86 0.0019 31.5 6.7 58 15-73 152-220 (268)
213 cd01822 Lysophospholipase_L1_l 40.2 84 0.0018 28.0 6.3 52 236-287 53-108 (177)
214 PRK00043 thiE thiamine-phospha 39.8 90 0.0019 29.2 6.7 67 185-257 115-193 (212)
215 cd03316 MR_like Mandelate race 39.7 1.4E+02 0.0031 30.5 8.7 62 10-74 126-196 (357)
216 cd05845 Ig2_L1-CAM_like Second 39.7 1.5E+02 0.0032 24.9 7.2 70 88-159 11-82 (95)
217 PRK07807 inosine 5-monophospha 39.5 2E+02 0.0043 31.4 10.0 107 178-290 223-340 (479)
218 TIGR01163 rpe ribulose-phospha 39.3 2.1E+02 0.0045 26.6 9.1 62 189-253 73-134 (210)
219 PTZ00300 pyruvate kinase; Prov 39.2 4.4E+02 0.0094 28.6 12.4 181 180-378 171-398 (454)
220 cd01493 APPBP1_RUB Ubiquitin a 39.2 1.5E+02 0.0032 31.9 8.8 67 210-286 76-143 (425)
221 PRK08328 hypothetical protein; 38.8 1.4E+02 0.003 29.0 8.0 65 211-286 85-149 (231)
222 PF01207 Dus: Dihydrouridine s 38.5 30 0.00066 35.2 3.4 65 189-257 145-218 (309)
223 PF10930 DUF2737: Protein of u 38.5 17 0.00038 27.2 1.2 25 281-305 7-31 (54)
224 smart00729 Elp3 Elongator prot 38.5 2.2E+02 0.0047 25.6 8.9 50 13-62 89-147 (216)
225 COG1646 Predicted phosphate-bi 38.1 67 0.0014 31.7 5.4 53 225-285 17-75 (240)
226 PRK07688 thiamine/molybdopteri 38.1 1.3E+02 0.0029 31.1 8.0 66 211-287 83-148 (339)
227 PRK07877 hypothetical protein; 37.9 1.2E+02 0.0026 34.9 8.2 68 209-287 161-228 (722)
228 TIGR02090 LEU1_arch isopropylm 37.9 4.9E+02 0.011 27.1 13.2 125 178-311 18-150 (363)
229 cd04731 HisF The cyclase subun 37.9 1E+02 0.0022 29.8 6.9 72 189-265 156-236 (243)
230 cd02809 alpha_hydroxyacid_oxid 37.9 70 0.0015 32.3 5.9 64 189-256 187-260 (299)
231 cd01573 modD_like ModD; Quinol 37.8 84 0.0018 31.5 6.4 62 185-252 194-258 (272)
232 COG0042 tRNA-dihydrouridine sy 37.7 32 0.00069 35.4 3.4 96 189-310 159-263 (323)
233 PF01729 QRPTase_C: Quinolinat 37.6 35 0.00075 31.8 3.3 59 189-252 94-155 (169)
234 cd05851 Ig3_Contactin-1 Third 37.6 1.5E+02 0.0032 23.8 6.8 70 77-158 2-75 (88)
235 cd01572 QPRTase Quinolinate ph 37.6 81 0.0018 31.6 6.2 62 183-253 191-255 (268)
236 cd07945 DRE_TIM_CMS Leptospira 37.5 2.1E+02 0.0046 28.7 9.2 116 164-287 6-135 (280)
237 PRK14077 pnk inorganic polypho 37.4 32 0.00069 34.8 3.3 32 348-379 174-209 (287)
238 PRK01130 N-acetylmannosamine-6 37.4 60 0.0013 31.0 5.1 61 189-254 133-204 (221)
239 cd07944 DRE_TIM_HOA_like 4-hyd 37.1 3.6E+02 0.0077 26.8 10.7 110 164-286 7-128 (266)
240 cd02922 FCB2_FMN Flavocytochro 37.1 77 0.0017 33.0 6.1 94 184-282 224-336 (344)
241 PF10087 DUF2325: Uncharacteri 37.1 1.9E+02 0.0041 23.9 7.5 70 208-287 10-82 (97)
242 PRK08329 threonine synthase; V 36.9 2.7E+02 0.0058 28.8 10.1 47 334-382 87-135 (347)
243 cd05722 Ig1_Neogenin First imm 36.8 1.7E+02 0.0037 23.5 7.1 76 89-164 8-89 (95)
244 cd02801 DUS_like_FMN Dihydrour 36.8 66 0.0014 30.6 5.3 66 189-257 145-218 (231)
245 COG1692 Calcineurin-like phosp 36.7 1.8E+02 0.0039 29.1 8.1 66 23-102 48-114 (266)
246 PRK07107 inosine 5-monophospha 36.5 65 0.0014 35.3 5.7 49 10-59 231-279 (502)
247 TIGR00973 leuA_bact 2-isopropy 36.3 4.7E+02 0.01 28.5 12.3 126 178-310 19-154 (494)
248 PF01079 Hint: Hint module; I 36.3 77 0.0017 30.8 5.6 51 90-140 69-123 (217)
249 PRK08185 hypothetical protein; 36.2 1.1E+02 0.0024 31.0 6.9 48 21-68 78-125 (283)
250 PLN02495 oxidoreductase, actin 36.2 1E+02 0.0022 32.7 6.9 36 10-45 113-153 (385)
251 TIGR01302 IMP_dehydrog inosine 36.1 3.1E+02 0.0068 29.4 10.8 115 180-310 222-345 (450)
252 PRK11858 aksA trans-homoaconit 36.1 5.3E+02 0.011 27.0 13.0 126 178-312 22-155 (378)
253 COG0036 Rpe Pentose-5-phosphat 36.1 2.5E+02 0.0053 27.5 8.9 57 192-251 81-137 (220)
254 PF02581 TMP-TENI: Thiamine mo 36.0 1.2E+02 0.0026 28.1 6.7 45 23-67 14-58 (180)
255 PRK08762 molybdopterin biosynt 35.9 1.5E+02 0.0033 30.9 8.2 67 210-287 191-257 (376)
256 PRK01911 ppnK inorganic polyph 35.9 32 0.00068 35.0 3.0 32 348-379 173-208 (292)
257 PRK07565 dihydroorotate dehydr 35.8 95 0.0021 31.8 6.6 34 11-44 102-137 (334)
258 TIGR00262 trpA tryptophan synt 35.6 2.1E+02 0.0045 28.4 8.7 122 189-324 109-234 (256)
259 PTZ00344 pyridoxal kinase; Pro 35.5 1.8E+02 0.004 29.0 8.5 112 175-287 53-182 (296)
260 cd00429 RPE Ribulose-5-phospha 35.5 3.6E+02 0.0078 24.9 10.2 84 189-287 19-112 (211)
261 PF04312 DUF460: Protein of un 35.4 33 0.00071 31.0 2.7 34 269-310 65-98 (138)
262 TIGR00875 fsa_talC_mipB fructo 35.2 55 0.0012 31.7 4.4 50 190-245 117-174 (213)
263 TIGR00735 hisF imidazoleglycer 35.2 1.2E+02 0.0026 29.8 6.9 83 189-283 162-253 (254)
264 PF01959 DHQS: 3-dehydroquinat 35.0 92 0.002 32.6 6.2 78 184-267 15-117 (354)
265 cd04726 KGPDC_HPS 3-Keto-L-gul 34.9 2.8E+02 0.0061 25.6 9.2 61 189-254 71-135 (202)
266 TIGR01859 fruc_bis_ald_ fructo 34.9 1.2E+02 0.0026 30.6 7.0 48 19-66 82-129 (282)
267 PRK07878 molybdopterin biosynt 34.8 1.8E+02 0.0039 30.7 8.6 66 210-286 98-163 (392)
268 PRK15108 biotin synthase; Prov 34.8 99 0.0022 32.0 6.5 30 11-42 125-154 (345)
269 PRK06843 inosine 5-monophospha 34.8 3.2E+02 0.007 29.2 10.4 106 180-290 151-266 (404)
270 TIGR02313 HpaI-NOT-DapA 2,4-di 34.8 3E+02 0.0064 27.7 9.8 98 185-286 24-133 (294)
271 cd02810 DHOD_DHPD_FMN Dihydroo 34.7 4.1E+02 0.0089 26.2 10.8 70 182-252 111-196 (289)
272 PRK02412 aroD 3-dehydroquinate 34.6 1.2E+02 0.0026 29.9 6.9 61 8-68 133-200 (253)
273 KOG0538 Glycolate oxidase [Ene 34.5 1.1E+02 0.0023 31.7 6.3 63 189-255 238-310 (363)
274 PRK08223 hypothetical protein; 34.4 1.8E+02 0.0039 29.5 8.1 69 209-286 82-150 (287)
275 TIGR02660 nifV_homocitr homoci 34.2 3.6E+02 0.0078 28.0 10.7 125 178-312 19-152 (365)
276 cd03309 CmuC_like CmuC_like. P 34.1 1.9E+02 0.0042 29.6 8.5 61 236-297 158-234 (321)
277 PRK07535 methyltetrahydrofolat 34.0 89 0.0019 31.1 5.8 55 25-81 29-83 (261)
278 PRK10812 putative DNAse; Provi 33.9 3.2E+02 0.0069 27.1 9.8 100 182-287 20-131 (265)
279 PRK05581 ribulose-phosphate 3- 33.8 1.5E+02 0.0032 27.9 7.2 90 185-287 20-116 (220)
280 cd05564 PTS_IIB_chitobiose_lic 33.8 1.7E+02 0.0037 24.3 6.7 62 209-285 15-76 (96)
281 PF10844 DUF2577: Protein of u 33.8 97 0.0021 26.2 5.2 13 120-132 73-85 (100)
282 PRK05742 nicotinate-nucleotide 33.6 91 0.002 31.5 5.8 72 170-253 188-262 (277)
283 PRK09389 (R)-citramalate synth 33.6 6.4E+02 0.014 27.5 12.8 124 179-311 21-152 (488)
284 cd04729 NanE N-acetylmannosami 33.6 3E+02 0.0065 26.1 9.3 65 184-252 82-150 (219)
285 cd04729 NanE N-acetylmannosami 33.5 89 0.0019 29.8 5.6 61 189-254 137-208 (219)
286 COG2870 RfaE ADP-heptose synth 33.5 2.2E+02 0.0048 30.5 8.6 112 192-310 61-205 (467)
287 KOG0193 Serine/threonine prote 33.5 29 0.00062 38.7 2.3 56 236-298 595-655 (678)
288 KOG0925 mRNA splicing factor A 33.4 85 0.0018 34.4 5.7 28 424-454 236-263 (699)
289 PRK10415 tRNA-dihydrouridine s 33.4 71 0.0015 32.7 5.2 70 183-258 150-230 (321)
290 cd04740 DHOD_1B_like Dihydroor 33.3 3E+02 0.0066 27.4 9.7 68 181-251 101-185 (296)
291 TIGR01306 GMP_reduct_2 guanosi 33.2 1.6E+02 0.0034 30.5 7.5 70 179-252 91-165 (321)
292 TIGR00196 yjeF_cterm yjeF C-te 33.1 59 0.0013 32.1 4.4 81 191-288 47-127 (272)
293 PRK05581 ribulose-phosphate 3- 32.9 2.9E+02 0.0062 25.9 9.0 62 189-253 78-139 (220)
294 cd02932 OYE_YqiM_FMN Old yello 32.9 84 0.0018 32.2 5.6 75 180-257 239-325 (336)
295 PRK01185 ppnK inorganic polyph 32.9 37 0.0008 34.1 2.9 32 348-379 155-190 (271)
296 PRK04761 ppnK inorganic polyph 32.6 53 0.0011 32.6 3.9 33 347-379 130-166 (246)
297 PF05991 NYN_YacP: YacP-like N 32.5 60 0.0013 30.0 4.1 48 352-413 67-120 (166)
298 PRK10425 DNase TatD; Provision 32.4 2.5E+02 0.0054 27.8 8.7 102 182-287 15-128 (258)
299 TIGR03844 cysteate_syn cysteat 32.4 4.1E+02 0.0089 28.1 10.8 87 335-441 101-189 (398)
300 PF01791 DeoC: DeoC/LacD famil 32.3 47 0.001 32.1 3.5 104 177-285 13-130 (236)
301 PRK09140 2-dehydro-3-deoxy-6-p 32.3 1.9E+02 0.0042 27.6 7.7 79 189-272 118-199 (206)
302 PRK07807 inosine 5-monophospha 32.3 70 0.0015 34.8 5.1 44 16-59 221-264 (479)
303 PRK11815 tRNA-dihydrouridine s 32.3 86 0.0019 32.3 5.6 72 182-258 151-239 (333)
304 PF00677 Lum_binding: Lumazine 32.3 1.6E+02 0.0034 24.1 6.1 55 111-169 20-82 (85)
305 TIGR00874 talAB transaldolase. 32.3 24 0.00053 36.3 1.5 18 191-209 165-182 (317)
306 cd04737 LOX_like_FMN L-Lactate 32.0 1.1E+02 0.0025 31.9 6.4 93 185-282 233-341 (351)
307 PRK02261 methylaspartate mutas 32.0 82 0.0018 28.2 4.7 33 189-221 48-82 (137)
308 cd02803 OYE_like_FMN_family Ol 32.0 1.2E+02 0.0025 30.7 6.5 76 179-257 225-316 (327)
309 COG1551 CsrA RNA-binding globa 31.9 90 0.0019 25.1 4.2 26 125-153 7-32 (73)
310 PRK03372 ppnK inorganic polyph 31.8 47 0.001 34.0 3.5 32 348-379 182-217 (306)
311 cd02069 methionine_synthase_B1 31.8 70 0.0015 30.8 4.5 40 189-228 133-174 (213)
312 cd00288 Pyruvate_Kinase Pyruva 31.8 3.5E+02 0.0075 29.6 10.3 178 180-379 198-426 (480)
313 PRK01231 ppnK inorganic polyph 31.7 48 0.001 33.7 3.5 32 348-379 172-207 (295)
314 PF04472 DUF552: Protein of un 31.7 2.1E+02 0.0046 22.5 6.6 43 22-65 10-52 (73)
315 PRK03512 thiamine-phosphate py 31.7 1.5E+02 0.0033 28.4 6.9 44 24-67 22-65 (211)
316 PF01261 AP_endonuc_2: Xylose 31.6 66 0.0014 29.4 4.2 117 189-310 2-153 (213)
317 PRK08195 4-hyroxy-2-oxovalerat 31.5 1.3E+02 0.0027 31.2 6.7 38 9-47 76-113 (337)
318 PRK02649 ppnK inorganic polyph 31.5 48 0.001 33.9 3.5 32 348-379 178-213 (305)
319 PLN02935 Bifunctional NADH kin 31.5 42 0.00091 36.7 3.2 32 348-379 377-412 (508)
320 PRK12653 fructose-6-phosphate 31.3 1.3E+02 0.0029 29.2 6.4 71 191-298 120-199 (220)
321 PRK06512 thiamine-phosphate py 31.3 2E+02 0.0044 27.8 7.6 44 24-67 29-73 (221)
322 COG0352 ThiE Thiamine monophos 31.0 2.7E+02 0.0058 27.0 8.4 46 24-69 24-69 (211)
323 PF02547 Queuosine_synth: Queu 31.0 1.6E+02 0.0034 30.7 7.2 60 111-171 36-110 (341)
324 cd03320 OSBS o-Succinylbenzoat 30.9 1.8E+02 0.0038 28.6 7.4 63 10-75 72-135 (263)
325 PRK05638 threonine synthase; V 30.8 3.1E+02 0.0068 29.3 9.8 47 334-382 95-143 (442)
326 cd01828 sialate_O-acetylestera 30.6 1.5E+02 0.0032 26.4 6.3 51 237-287 39-94 (169)
327 cd02803 OYE_like_FMN_family Ol 30.6 5.7E+02 0.012 25.7 11.6 110 177-289 129-290 (327)
328 PRK13509 transcriptional repre 30.5 1.4E+02 0.003 29.4 6.5 25 355-379 96-120 (251)
329 cd05762 Ig8_MLCK Eighth immuno 30.5 3E+02 0.0064 22.6 7.6 72 88-163 8-84 (98)
330 PRK08227 autoinducer 2 aldolas 30.5 5.7E+02 0.012 25.6 14.4 147 175-378 37-197 (264)
331 PLN02535 glycolate oxidase 30.3 84 0.0018 33.0 5.1 65 189-257 238-312 (364)
332 cd00019 AP2Ec AP endonuclease 30.3 1.6E+02 0.0034 29.0 6.9 95 189-284 17-140 (279)
333 KOG2618 Uncharacterized conser 30.3 52 0.0011 33.7 3.4 51 404-454 80-130 (366)
334 TIGR00857 pyrC_multi dihydroor 30.2 6.6E+02 0.014 26.3 15.7 42 341-382 203-245 (411)
335 cd02801 DUS_like_FMN Dihydrour 30.0 1.6E+02 0.0035 27.9 6.8 33 10-44 54-90 (231)
336 PRK03708 ppnK inorganic polyph 30.0 52 0.0011 33.1 3.4 32 348-379 162-197 (277)
337 PLN03034 phosphoglycerate kina 29.8 64 0.0014 35.1 4.2 205 24-287 121-344 (481)
338 PRK10550 tRNA-dihydrouridine s 29.8 90 0.002 31.9 5.2 64 189-258 155-230 (312)
339 cd02940 DHPD_FMN Dihydropyrimi 29.7 4.3E+02 0.0093 26.6 10.1 106 182-290 113-262 (299)
340 PRK05886 yajC preprotein trans 29.6 1.6E+02 0.0035 25.6 5.9 43 117-162 32-74 (109)
341 PRK04539 ppnK inorganic polyph 29.6 54 0.0012 33.4 3.5 32 348-379 178-213 (296)
342 PTZ00170 D-ribulose-5-phosphat 29.6 70 0.0015 31.1 4.2 68 189-262 82-151 (228)
343 TIGR01305 GMP_reduct_1 guanosi 29.6 4.6E+02 0.01 27.4 10.1 115 180-310 105-230 (343)
344 PRK06531 yajC preprotein trans 29.5 1.6E+02 0.0034 25.8 5.8 38 117-155 30-67 (113)
345 COG2145 ThiM Hydroxyethylthiaz 29.5 93 0.002 31.2 4.9 52 224-285 39-90 (265)
346 COG0135 TrpF Phosphoribosylant 29.4 1.5E+02 0.0033 28.6 6.3 95 183-289 63-163 (208)
347 COG0646 MetH Methionine syntha 29.4 1.9E+02 0.0041 29.6 7.2 63 9-72 113-193 (311)
348 PRK07411 hypothetical protein; 29.4 2.3E+02 0.0051 29.8 8.4 66 210-286 94-159 (390)
349 CHL00200 trpA tryptophan synth 29.4 3.5E+02 0.0077 27.0 9.2 64 234-315 106-171 (263)
350 PLN02929 NADH kinase 29.4 39 0.00084 34.5 2.4 28 348-375 193-220 (301)
351 PRK14045 1-aminocyclopropane-1 29.3 3.4E+02 0.0074 27.7 9.4 30 350-379 184-217 (329)
352 PRK05600 thiamine biosynthesis 29.2 2.1E+02 0.0046 29.9 8.0 68 209-287 96-163 (370)
353 cd01311 PDC_hydrolase 2-pyrone 29.2 2.2E+02 0.0048 27.8 7.7 59 12-72 71-130 (263)
354 TIGR00686 phnA alkylphosphonat 29.1 1.7E+02 0.0038 25.4 5.9 51 90-161 49-99 (109)
355 COG3010 NanE Putative N-acetyl 29.1 95 0.0021 30.2 4.8 112 232-378 51-185 (229)
356 PRK06835 DNA replication prote 29.0 1.1E+02 0.0024 31.5 5.8 45 243-289 244-288 (329)
357 PRK03906 mannonate dehydratase 29.0 1.2E+02 0.0026 32.1 6.0 87 182-288 11-104 (385)
358 COG4013 Uncharacterized protei 28.9 1.4E+02 0.003 24.7 5.0 35 91-143 20-54 (91)
359 PF13742 tRNA_anti_2: OB-fold 28.8 3.4E+02 0.0075 22.6 8.2 29 117-145 61-98 (99)
360 TIGR00693 thiE thiamine-phosph 28.8 1.1E+02 0.0024 28.3 5.3 70 184-259 106-187 (196)
361 PRK13307 bifunctional formalde 28.5 2.5E+02 0.0053 29.9 8.3 63 189-253 244-307 (391)
362 PRK02645 ppnK inorganic polyph 28.5 53 0.0012 33.5 3.2 32 348-379 176-211 (305)
363 cd00640 Trp-synth-beta_II Tryp 28.5 5.2E+02 0.011 24.7 10.1 48 333-382 29-81 (244)
364 cd07943 DRE_TIM_HOA 4-hydroxy- 28.5 1.5E+02 0.0032 29.3 6.3 41 9-49 73-113 (263)
365 PRK07107 inosine 5-monophospha 28.4 3.3E+02 0.0072 29.9 9.5 67 184-255 244-315 (502)
366 PRK05826 pyruvate kinase; Prov 28.4 7.2E+02 0.016 27.1 11.9 181 180-377 197-422 (465)
367 KOG2335 tRNA-dihydrouridine sy 28.2 1.1E+02 0.0024 32.0 5.4 91 189-282 162-269 (358)
368 PRK02155 ppnK NAD(+)/NADH kina 28.2 54 0.0012 33.2 3.2 32 348-379 173-208 (291)
369 cd01830 XynE_like SGNH_hydrola 27.8 85 0.0019 29.2 4.3 54 234-287 60-126 (204)
370 cd03129 GAT1_Peptidase_E_like 27.8 2E+02 0.0043 27.2 6.9 91 193-285 27-119 (210)
371 PF03437 BtpA: BtpA family; I 27.7 6.2E+02 0.014 25.2 13.2 61 338-410 160-226 (254)
372 TIGR03217 4OH_2_O_val_ald 4-hy 27.6 1.6E+02 0.0035 30.4 6.6 39 8-47 74-112 (333)
373 COG0284 PyrF Orotidine-5'-phos 27.6 1.6E+02 0.0035 29.1 6.3 85 189-277 150-239 (240)
374 PRK08072 nicotinate-nucleotide 27.6 1.2E+02 0.0026 30.6 5.5 63 182-253 196-261 (277)
375 PRK09989 hypothetical protein; 27.5 4.7E+02 0.01 25.3 9.7 36 186-223 20-55 (258)
376 PRK06381 threonine synthase; V 27.5 5.1E+02 0.011 26.1 10.3 44 335-379 47-92 (319)
377 PRK14851 hypothetical protein; 27.4 2.4E+02 0.0051 32.2 8.4 86 210-307 99-191 (679)
378 COG1105 FruK Fructose-1-phosph 27.1 1.8E+02 0.004 29.9 6.8 60 246-310 130-195 (310)
379 PRK14075 pnk inorganic polypho 26.8 73 0.0016 31.6 3.8 32 348-379 143-178 (256)
380 TIGR01496 DHPS dihydropteroate 26.8 1.4E+02 0.003 29.7 5.7 53 25-79 27-87 (257)
381 PF02599 CsrA: Global regulato 26.8 93 0.002 23.6 3.4 26 125-153 7-32 (54)
382 PRK06721 threonine synthase; R 26.8 5.2E+02 0.011 26.7 10.3 46 335-382 59-106 (352)
383 PF07722 Peptidase_C26: Peptid 26.6 83 0.0018 30.3 4.1 70 215-287 31-113 (217)
384 PF04551 GcpE: GcpE protein; 26.6 68 0.0015 33.5 3.6 50 23-75 33-82 (359)
385 PRK06260 threonine synthase; V 26.5 4.1E+02 0.009 27.9 9.6 43 336-379 100-144 (397)
386 PRK13143 hisH imidazole glycer 26.4 2.4E+02 0.0052 26.5 7.2 70 208-291 11-85 (200)
387 PF13407 Peripla_BP_4: Peripla 26.4 1.2E+02 0.0025 28.8 5.1 63 213-285 20-85 (257)
388 PRK00278 trpC indole-3-glycero 26.3 3.6E+02 0.0077 26.7 8.6 92 180-288 68-168 (260)
389 PRK10116 universal stress prot 26.3 1.6E+02 0.0034 25.3 5.5 39 340-379 92-137 (142)
390 TIGR00542 hxl6Piso_put hexulos 26.3 4.9E+02 0.011 25.4 9.7 97 189-285 23-151 (279)
391 PLN02826 dihydroorotate dehydr 26.2 3.6E+02 0.0078 28.8 9.1 27 177-203 271-297 (409)
392 TIGR00260 thrC threonine synth 26.1 5.3E+02 0.011 26.0 10.1 46 336-383 56-103 (328)
393 PRK00568 carbon storage regula 26.1 1.1E+02 0.0024 24.9 3.9 26 125-153 7-32 (76)
394 PLN02741 riboflavin synthase 26.1 1.8E+02 0.0038 27.8 6.1 56 111-170 23-85 (194)
395 cd00331 IGPS Indole-3-glycerol 26.1 5.2E+02 0.011 24.3 9.5 90 181-287 30-128 (217)
396 COG1862 YajC Preprotein transl 26.1 1.8E+02 0.0039 24.7 5.5 43 117-162 37-79 (97)
397 PRK00073 pgk phosphoglycerate 26.0 1.4E+02 0.0031 31.6 6.0 205 24-287 39-262 (389)
398 PRK08999 hypothetical protein; 26.0 1.2E+02 0.0026 30.5 5.3 67 179-252 231-308 (312)
399 cd01171 YXKO-related B.subtili 26.0 1.4E+02 0.003 28.9 5.6 82 191-288 31-112 (254)
400 PRK02615 thiamine-phosphate py 25.9 1.5E+02 0.0034 30.8 6.1 88 180-272 246-342 (347)
401 COG0051 RpsJ Ribosomal protein 25.9 1.2E+02 0.0026 26.1 4.4 38 35-78 3-40 (104)
402 cd04732 HisA HisA. Phosphorib 25.9 5.3E+02 0.012 24.4 9.6 37 184-222 85-121 (234)
403 PRK12339 2-phosphoglycerate ki 25.8 70 0.0015 30.4 3.3 30 264-293 159-188 (197)
404 TIGR00078 nadC nicotinate-nucl 25.7 1.5E+02 0.0033 29.6 5.8 61 183-252 187-250 (265)
405 PRK07565 dihydroorotate dehydr 25.6 3.7E+02 0.0081 27.5 8.9 29 12-40 15-43 (334)
406 COG0084 TatD Mg-dependent DNas 25.6 3.7E+02 0.0079 26.8 8.5 103 182-287 17-132 (256)
407 cd01491 Ube1_repeat1 Ubiquitin 25.6 3E+02 0.0066 27.8 8.0 63 210-287 75-137 (286)
408 COG0279 GmhA Phosphoheptose is 25.6 2.5E+02 0.0055 26.4 6.7 44 335-379 24-79 (176)
409 cd02071 MM_CoA_mut_B12_BD meth 25.4 1.1E+02 0.0023 26.5 4.2 41 189-229 44-87 (122)
410 PRK05585 yajC preprotein trans 25.4 2.1E+02 0.0045 24.7 5.8 41 118-161 47-87 (106)
411 PF01113 DapB_N: Dihydrodipico 25.4 1.1E+02 0.0023 26.6 4.2 40 237-287 59-98 (124)
412 cd00537 MTHFR Methylenetetrahy 25.4 1.2E+02 0.0025 30.1 5.0 64 180-244 146-209 (274)
413 TIGR00187 ribE riboflavin synt 25.3 1.7E+02 0.0036 28.1 5.8 56 111-170 22-85 (200)
414 PRK07709 fructose-bisphosphate 25.3 2.2E+02 0.0047 28.9 6.9 48 19-66 85-132 (285)
415 PRK09997 hydroxypyruvate isome 25.3 6.2E+02 0.014 24.4 10.4 34 189-223 22-55 (258)
416 cd03319 L-Ala-DL-Glu_epimerase 25.2 5.4E+02 0.012 25.8 9.9 97 179-287 188-286 (316)
417 PLN02282 phosphoglycerate kina 25.1 95 0.0021 33.1 4.4 204 24-286 46-268 (401)
418 PRK05458 guanosine 5'-monophos 25.1 4.7E+02 0.01 27.1 9.4 70 180-252 95-168 (326)
419 PRK05096 guanosine 5'-monophos 25.1 5.9E+02 0.013 26.7 10.0 105 180-289 106-222 (346)
420 PRK10528 multifunctional acyl- 25.0 2.2E+02 0.0047 26.3 6.5 53 234-286 58-114 (191)
421 PF00682 HMGL-like: HMGL-like 25.0 6E+02 0.013 24.1 10.9 125 179-310 11-145 (237)
422 cd01989 STK_N The N-terminal d 25.0 1.7E+02 0.0037 25.2 5.5 43 337-379 90-143 (146)
423 cd06568 GH20_SpHex_like A subg 25.0 4.4E+02 0.0096 27.1 9.3 109 178-289 71-197 (329)
424 KOG1250 Threonine/serine dehyd 24.9 4.5E+02 0.0097 28.2 9.1 147 272-455 52-202 (457)
425 cd00502 DHQase_I Type I 3-dehy 24.9 3.8E+02 0.0083 25.6 8.4 64 9-72 112-182 (225)
426 PRK07998 gatY putative fructos 24.9 3.1E+02 0.0068 27.8 7.9 49 20-68 83-131 (283)
427 PLN02389 biotin synthase 24.7 1.8E+02 0.0039 30.7 6.4 55 11-68 167-229 (379)
428 cd01988 Na_H_Antiporter_C The 24.7 1.9E+02 0.0041 24.1 5.6 41 338-379 82-131 (132)
429 PRK02048 4-hydroxy-3-methylbut 24.7 95 0.0021 34.7 4.4 50 23-75 43-92 (611)
430 PRK11750 gltB glutamate syntha 24.5 1.1E+02 0.0024 37.8 5.2 85 191-288 1016-1123(1485)
431 cd02067 B12-binding B12 bindin 24.5 1.3E+02 0.0028 25.5 4.5 39 189-227 44-85 (119)
432 PF08541 ACP_syn_III_C: 3-Oxoa 24.5 1.5E+02 0.0033 23.7 4.8 27 431-457 55-82 (90)
433 TIGR03128 RuMP_HxlA 3-hexulose 24.4 3.6E+02 0.0077 25.1 7.9 64 189-254 70-135 (206)
434 PRK02231 ppnK inorganic polyph 24.4 84 0.0018 31.6 3.7 32 348-379 153-188 (272)
435 PF01026 TatD_DNase: TatD rela 24.4 2.9E+02 0.0063 26.9 7.5 98 185-288 18-132 (255)
436 PF00150 Cellulase: Cellulase 24.3 1.5E+02 0.0031 28.6 5.4 54 22-77 22-85 (281)
437 cd02070 corrinoid_protein_B12- 24.3 1.2E+02 0.0025 28.8 4.5 40 189-228 127-170 (201)
438 PRK11197 lldD L-lactate dehydr 24.3 1.3E+02 0.0028 31.8 5.3 66 183-253 255-330 (381)
439 cd01486 Apg7 Apg7 is an E1-lik 24.2 3.4E+02 0.0073 27.9 8.0 73 210-292 57-145 (307)
440 PRK02714 O-succinylbenzoate sy 24.2 2.2E+02 0.0048 29.0 6.9 62 11-75 110-171 (320)
441 PRK01712 carbon storage regula 24.2 1.9E+02 0.004 22.8 4.8 27 124-153 6-32 (64)
442 PRK06801 hypothetical protein; 24.1 2.6E+02 0.0056 28.3 7.2 47 20-66 83-129 (286)
443 cd00423 Pterin_binding Pterin 23.9 1.7E+02 0.0037 28.8 5.8 52 25-78 28-87 (258)
444 cd04733 OYE_like_2_FMN Old yel 23.9 1.4E+02 0.0031 30.6 5.4 73 179-257 233-327 (338)
445 TIGR00737 nifR3_yhdG putative 23.9 1.7E+02 0.0036 29.8 5.9 64 189-257 154-227 (319)
446 cd00945 Aldolase_Class_I Class 23.9 2E+02 0.0044 26.0 6.0 62 10-71 48-119 (201)
447 cd05894 Ig_C5_MyBP-C C5 immuno 23.8 3E+02 0.0066 21.9 6.4 67 88-158 3-74 (86)
448 cd04742 NPD_FabD 2-Nitropropan 23.7 5.2E+02 0.011 27.7 9.7 104 185-290 86-229 (418)
449 COG2450 Uncharacterized conser 23.5 2E+02 0.0043 25.6 5.4 60 9-70 40-101 (124)
450 COG1167 ARO8 Transcriptional r 23.4 2.3E+02 0.005 30.5 7.1 52 12-63 388-455 (459)
451 PRK07591 threonine synthase; V 23.4 5.6E+02 0.012 27.2 10.0 43 336-379 122-166 (421)
452 PRK09722 allulose-6-phosphate 23.4 1.6E+02 0.0035 28.9 5.4 59 190-251 77-136 (229)
453 PRK06015 keto-hydroxyglutarate 23.2 5.9E+02 0.013 24.4 9.1 153 200-404 8-164 (201)
454 PRK08883 ribulose-phosphate 3- 23.2 1.7E+02 0.0038 28.3 5.6 59 190-251 76-134 (220)
455 PF02110 HK: Hydroxyethylthiaz 23.0 1.7E+02 0.0037 29.1 5.5 53 224-286 33-85 (246)
456 PRK12656 fructose-6-phosphate 23.0 97 0.0021 30.2 3.8 50 190-245 121-178 (222)
457 COG0825 AccA Acetyl-CoA carbox 22.9 1.3E+02 0.0028 30.8 4.6 41 41-82 127-167 (317)
458 PRK09982 universal stress prot 22.9 1.9E+02 0.0042 25.2 5.5 41 339-379 92-137 (142)
459 COG2945 Predicted hydrolase of 22.8 1.1E+02 0.0025 29.4 4.0 35 26-60 52-98 (210)
460 PF01408 GFO_IDH_MocA: Oxidore 22.8 2.4E+02 0.0053 23.4 5.9 60 235-313 50-111 (120)
461 PRK07896 nicotinate-nucleotide 22.8 2.1E+02 0.0045 29.2 6.2 62 186-253 211-275 (289)
462 TIGR01768 GGGP-family geranylg 22.8 1.7E+02 0.0038 28.6 5.4 45 234-285 15-60 (223)
463 PF00455 DeoRC: DeoR C termina 22.8 2E+02 0.0042 26.3 5.6 21 359-379 26-47 (161)
464 TIGR01858 tag_bisphos_ald clas 22.7 2.4E+02 0.0052 28.5 6.7 47 20-66 81-127 (282)
465 PRK01362 putative translaldola 22.7 1.2E+02 0.0026 29.3 4.4 50 190-245 117-174 (214)
466 PRK11449 putative deoxyribonuc 22.7 4.7E+02 0.01 25.8 8.7 103 183-287 20-134 (258)
467 TIGR01304 IMP_DH_rel_2 IMP deh 22.7 70 0.0015 33.6 2.9 62 189-254 203-286 (369)
468 PRK08999 hypothetical protein; 22.6 2.5E+02 0.0054 28.1 6.9 44 24-67 147-190 (312)
469 cd05728 Ig4_Contactin-2-like F 22.6 3E+02 0.0066 21.6 6.1 65 89-158 8-73 (85)
470 PRK08318 dihydropyrimidine deh 22.6 5.2E+02 0.011 27.3 9.5 107 182-290 113-263 (420)
471 PRK08116 hypothetical protein; 22.6 2.1E+02 0.0045 28.5 6.2 47 241-289 174-220 (268)
472 COG1879 RbsB ABC-type sugar tr 22.6 1.3E+02 0.0028 30.0 4.8 41 235-285 80-121 (322)
473 cd00331 IGPS Indole-3-glycerol 22.6 2E+02 0.0044 27.2 5.9 57 10-69 10-76 (217)
474 cd02931 ER_like_FMN Enoate red 22.6 2.3E+02 0.0051 29.7 6.8 72 178-257 248-340 (382)
475 PRK12655 fructose-6-phosphate 22.6 94 0.002 30.3 3.6 49 190-244 119-175 (220)
476 PRK06836 aspartate aminotransf 22.5 2.1E+02 0.0045 29.7 6.4 42 22-64 340-392 (394)
477 COG0673 MviM Predicted dehydro 22.5 1.7E+02 0.0036 29.4 5.6 62 234-314 54-117 (342)
478 PLN02321 2-isopropylmalate syn 22.4 1.2E+03 0.025 26.6 12.6 126 179-310 105-248 (632)
479 TIGR00520 asnASE_II L-asparagi 22.4 1.1E+02 0.0024 31.9 4.2 48 240-293 256-304 (349)
480 PRK12290 thiE thiamine-phospha 22.3 2.6E+02 0.0055 30.2 7.0 45 23-67 219-263 (437)
481 PF02601 Exonuc_VII_L: Exonucl 22.3 4.3E+02 0.0092 26.7 8.5 102 199-304 17-137 (319)
482 TIGR02198 rfaE_dom_I rfaE bifu 22.3 6.4E+02 0.014 24.8 9.7 46 237-287 135-180 (315)
483 KOG3974 Predicted sugar kinase 22.2 2.7E+02 0.0059 28.1 6.6 49 233-285 89-137 (306)
484 PLN02591 tryptophan synthase 22.2 3.8E+02 0.0083 26.5 7.9 65 233-315 92-158 (250)
485 TIGR00202 csrA carbon storage 22.1 1.7E+02 0.0037 23.4 4.2 27 124-153 6-32 (69)
486 TIGR01501 MthylAspMutase methy 22.0 1.3E+02 0.0029 26.9 4.2 33 189-221 46-80 (134)
487 PF07894 DUF1669: Protein of u 21.9 4.7E+02 0.01 26.6 8.4 52 24-78 136-187 (284)
488 cd02072 Glm_B12_BD B12 binding 21.9 1.6E+02 0.0034 26.3 4.6 39 189-227 44-85 (128)
489 COG1465 Predicted alternative 21.9 2E+02 0.0043 29.5 5.6 46 220-266 93-138 (376)
490 TIGR01334 modD putative molybd 21.8 1.3E+02 0.0028 30.4 4.5 63 184-252 198-263 (277)
491 PRK06512 thiamine-phosphate py 21.8 2.9E+02 0.0064 26.7 6.9 64 189-258 125-198 (221)
492 PRK12346 transaldolase A; Prov 21.8 1.2E+02 0.0025 31.4 4.2 50 190-245 165-235 (316)
493 PRK00748 1-(5-phosphoribosyl)- 21.8 1.3E+02 0.0028 28.8 4.4 80 180-265 144-233 (233)
494 TIGR01182 eda Entner-Doudoroff 21.8 6.1E+02 0.013 24.3 8.9 56 345-413 116-175 (204)
495 TIGR00977 LeuA_rel 2-isopropyl 21.7 3.3E+02 0.0071 30.1 7.9 130 178-311 19-163 (526)
496 PRK08091 ribulose-phosphate 3- 21.7 2.2E+02 0.0047 27.9 5.9 58 191-251 87-146 (228)
497 TIGR00113 queA S-adenosylmethi 21.6 3E+02 0.0066 28.7 7.2 57 113-170 38-109 (344)
498 smart00870 Asparaginase Aspara 21.2 1.2E+02 0.0027 31.0 4.4 41 246-292 236-276 (323)
499 PRK08005 epimerase; Validated 21.2 2.1E+02 0.0045 27.7 5.6 59 190-251 76-134 (210)
500 PRK14469 ribosomal RNA large s 21.2 3.4E+02 0.0074 28.0 7.6 40 176-217 295-334 (343)
No 1
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=5.1e-128 Score=1014.75 Aligned_cols=460 Identities=79% Similarity=1.173 Sum_probs=427.2
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCC
Q 012335 7 NSPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKD 86 (466)
Q Consensus 7 ~~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 86 (466)
+.|||||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++++|+|++||+||||||||+|.+++
T Consensus 19 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g~~i~Il~Dl~GPkIR~g~~~~ 98 (511)
T PLN02461 19 RRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTGILCAVMLDTKGPEIRTGFLKD 98 (511)
T ss_pred cCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEeeCCCCceeccccCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCcEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCc
Q 012335 87 GKPIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKN 166 (466)
Q Consensus 87 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kg 166 (466)
++++.|++||.++|+.++...++++.++++|++|++.+++||.||+|||+|.|+|++++.+++.++|+|.+||.|+++||
T Consensus 99 ~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~Kg 178 (511)
T PLN02461 99 GKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGERKN 178 (511)
T ss_pred CCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecCCce
Confidence 55799999999999988656678889999999999999999999999999999999987556899999999999999999
Q ss_pred cccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcC
Q 012335 167 VNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANS 246 (466)
Q Consensus 167 vnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~s 246 (466)
+|+||..+++|+|||||++||.+|++++++|||++||||+++||+++|++|++.|.+++||||||+++|++||+||+++|
T Consensus 179 vnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~~s 258 (511)
T PLN02461 179 VNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILAES 258 (511)
T ss_pred eeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHHhc
Confidence 99999999999999999999735999999999999999999999999999998888999999999999999999999999
Q ss_pred CeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhhc
Q 012335 247 DAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENFI 315 (466)
Q Consensus 247 DgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~~ 315 (466)
|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||||| +|++.
T Consensus 259 DgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~ 338 (511)
T PLN02461 259 DAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAA 338 (511)
T ss_pred CEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 78888
Q ss_pred cchhh-----HHHHHhh-------------C--CC--CCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCC
Q 012335 316 NYGDL-----FKKIMET-------------A--PV--PMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPS 373 (466)
Q Consensus 316 ~~~~~-----~~~~~~~-------------~--~~--~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~ 373 (466)
+.||. +.++... . .. +.++.+++|.+|+++|.+++|++|++||.||+||+++|||||.
T Consensus 339 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~RP~ 418 (511)
T PLN02461 339 GAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYRPA 418 (511)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCC
Confidence 77662 2222210 0 01 2245789999999999999999999999999999999999999
Q ss_pred CCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEe
Q 012335 374 MPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHR 453 (466)
Q Consensus 374 ~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g 453 (466)
|||||+|.|.++|.+++|+|++++++|||+|+|||+|++++......|..+.+++++.|++++++.|++++||.||+++|
T Consensus 419 ~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~~ 498 (511)
T PLN02461 419 VPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPGDSVVALHR 498 (511)
T ss_pred CCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHHHHHHHHHHHHHcCCCCCcCEEEEEec
Confidence 99999987778888999999999999999999999999876533344667899999999999999999999999999999
Q ss_pred cCCCcEEEEEEcC
Q 012335 454 MHVASVLKILAVN 466 (466)
Q Consensus 454 ~g~tn~irI~~v~ 466 (466)
+|+||++||..++
T Consensus 499 ~g~tn~i~v~~v~ 511 (511)
T PLN02461 499 IGGASVIKILTVK 511 (511)
T ss_pred CCCCcEEEEEEeC
Confidence 9999999999874
No 2
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=3.1e-125 Score=993.20 Aligned_cols=435 Identities=31% Similarity=0.527 Sum_probs=405.1
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCC
Q 012335 8 SPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDG 87 (466)
Q Consensus 8 ~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~ 87 (466)
.|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|+|++||+||||||||+|.++++
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~ 103 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKGFAVAVMMDTEGSEIHMGDLGGA 103 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCceEEEecCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred CcEEecCCCEEEEEeCCCCCC--CccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCC
Q 012335 88 KPIQLVQGQEITISTDYSLKG--DEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERK 165 (466)
Q Consensus 88 ~~i~l~~G~~v~l~~~~~~~~--~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~K 165 (466)
+++.|++||+++|+.+. ..+ +.+.++++|++|++.+++||.||+|||+|.|+|++++ ++.+.|+|.+||.|+++|
T Consensus 104 ~~i~l~~G~~v~lt~~~-~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~--~~~v~~~v~~~G~l~~~K 180 (509)
T PLN02762 104 SSAKAEDGEEWTFTVRK-FDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKI--GPDVKCKCTDPGLLLPRA 180 (509)
T ss_pred ccEEecCCCEEEEeCCc-cCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEE--CCEEEEEEEeCcEEcCCC
Confidence 57999999999999863 345 3578999999999999999999999999999999885 778999999999999999
Q ss_pred cccc-------CCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCC--CceEEEeecCHHHH
Q 012335 166 NVNL-------PGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAK--NILLMSKVENLEGV 236 (466)
Q Consensus 166 gvnl-------p~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~--~~~IiaKIE~~~av 236 (466)
|||+ |+..+++|+|||||++|| +||+++|+|||++||||+++||+++|++|.+.|. +++||||||+++|+
T Consensus 181 gvNl~~~g~~~p~~~~~lp~ltekD~~di-~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av 259 (509)
T PLN02762 181 NLTFWRDGSLVRERNAMLPTISSKDWLDI-DFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSL 259 (509)
T ss_pred ceeeccccCCCCCCccCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHH
Confidence 9999 999999999999999999 9999999999999999999999999999998874 79999999999999
Q ss_pred hcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh------
Q 012335 237 ANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA------ 310 (466)
Q Consensus 237 ~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na------ 310 (466)
+|||||+++||||||||||||+|+|+|+||.+||+||.+|+++|||||+||||||||++||+|||||++|||||
T Consensus 260 ~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtD 339 (509)
T PLN02762 260 KNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRAD 339 (509)
T ss_pred HHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----hhhhccchhh-----HHHHHhh----------C------C-CC---CCcHHHHHHHHHHHHHhcCCcEEEEEcCC
Q 012335 311 -----AENFINYGDL-----FKKIMET----------A------P-VP---MSPLESLASSAVRTANCIKAALILVLTRG 360 (466)
Q Consensus 311 -----aE~~~~~~~~-----~~~~~~~----------~------~-~~---~~~~~~ia~~av~~a~~~~a~~Ivv~T~s 360 (466)
+|++.+.||. +.++... . . .. .+..+++|.+|+++|+.++|++||+||+|
T Consensus 340 avMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~s 419 (509)
T PLN02762 340 ALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKH 419 (509)
T ss_pred EEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCC
Confidence 8999887762 2222110 0 0 00 23468999999999999999999999999
Q ss_pred chHHHHHHhcCCCCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcC
Q 012335 361 GTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKG 440 (466)
Q Consensus 361 G~ta~~vSk~RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G 440 (466)
|+||+++|||||.+||||+ | ++++++|||+|+|||+|++.+.. .+.|++++.+++++++.|
T Consensus 420 G~tA~~iSk~RP~~pIia~-------t------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~~~~~~~~~g 480 (509)
T PLN02762 420 GHMASLLSRNRPDCPIFAF-------T------DTTSVRRRLNLQWGLIPFRLDFS------DDMESNLNKTFSLLKARG 480 (509)
T ss_pred cHHHHHHHhhCCCCCEEEE-------C------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999 4 99999999999999999987543 678999999999999999
Q ss_pred CCCCCCEEEEEEec---CCCcEEEEEEc
Q 012335 441 LCRPGDSVVALHRM---HVASVLKILAV 465 (466)
Q Consensus 441 ~~~~GD~VVvv~g~---g~tn~irI~~v 465 (466)
++++||.||+++|+ |+||+|||..|
T Consensus 481 ~~~~GD~VVv~~g~~~~g~tn~i~v~~v 508 (509)
T PLN02762 481 MIKSGDLVIAVSDLTPSSMLQSIQVRNV 508 (509)
T ss_pred CCCCCCEEEEEeCCCCCCCceEEEEEEc
Confidence 99999999999996 99999999986
No 3
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=5.1e-125 Score=991.04 Aligned_cols=438 Identities=49% Similarity=0.768 Sum_probs=408.3
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHc-CCceEEEecCCCCeeEeeecC
Q 012335 7 NSPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNT-GILCAVMLDTKGPEIRTGFLK 85 (466)
Q Consensus 7 ~~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~-~~~i~i~~Dl~GpkiR~g~~~ 85 (466)
+.|||||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|+++++. +++++||+||||||||+|.++
T Consensus 36 ~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g~~~ 115 (513)
T PTZ00066 36 RQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTGFLK 115 (513)
T ss_pred cCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeecccC
Confidence 5689999999999999999999999999999999999999999999999999999996 899999999999999999998
Q ss_pred CCCcEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCC
Q 012335 86 DGKPIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERK 165 (466)
Q Consensus 86 ~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~K 165 (466)
+++++.|++||.++|+.+....++++.++++|++|++.+++||+||+|||+|.|+|++++ ++.+.|+|++||.|+++|
T Consensus 116 ~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~~~--~~~v~~~v~~gG~l~~~K 193 (513)
T PTZ00066 116 NHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIADGSLSCKVLEVH--DDYIITKVLNNATIGERK 193 (513)
T ss_pred CCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEeCCEEEEEEEEEE--CCEEEEEEEeCcEEcCCc
Confidence 655799999999999987556788889999999999999999999999999999999985 689999999999999999
Q ss_pred ccccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc
Q 012335 166 NVNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 166 gvnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~ 245 (466)
|+|+||..+++|+|||+|++||.+|++++|+|||++||||+++||.++|++|++.|.+++||||||+++|++|||||+++
T Consensus 194 gvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~ 273 (513)
T PTZ00066 194 NMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAE 273 (513)
T ss_pred ccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHh
Confidence 99999999999999999999963699999999999999999999999999999988899999999999999999999999
Q ss_pred CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhh
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENF 314 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~ 314 (466)
||||||||||||+|+|+|+||.+||+||++|+++|||||+||||||||++||+|||||++||||| +|++
T Consensus 274 sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA 353 (513)
T PTZ00066 274 SDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETA 353 (513)
T ss_pred cCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 7888
Q ss_pred ccchhh-----HHHHHhh-----------------CCCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCC
Q 012335 315 INYGDL-----FKKIMET-----------------APVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRP 372 (466)
Q Consensus 315 ~~~~~~-----~~~~~~~-----------------~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP 372 (466)
.+.||. +.++... ...+.+..+++|.+|+++|.+++|++|++||.||+||+++|||||
T Consensus 354 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~RP 433 (513)
T PTZ00066 354 NGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYRP 433 (513)
T ss_pred CCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCC
Confidence 887763 2222210 000113468999999999999999999999999999999999999
Q ss_pred CCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEE
Q 012335 373 SMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALH 452 (466)
Q Consensus 373 ~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~ 452 (466)
.|||||+ | ++++++|||+|+|||+|++++.. .+.|++++.|++++++.|++++||.||+++
T Consensus 434 ~~pIia~-------t------~~~~~~R~L~L~wGV~p~~~~~~------~~~~~~i~~a~~~~~~~g~~~~GD~vVv~~ 494 (513)
T PTZ00066 434 SCTILAL-------S------ASPSVVKSLSVARGVTTYVVNSF------QGTDVVIRNAIALAKERGLVESGDSAIAVH 494 (513)
T ss_pred CCCEEEE-------C------CCHHHHHHhhcccCcEEEEecCC------CCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 9999999 4 99999999999999999988652 678899999999999999999999999999
Q ss_pred ec-----CCCcEEEEEEc
Q 012335 453 RM-----HVASVLKILAV 465 (466)
Q Consensus 453 g~-----g~tn~irI~~v 465 (466)
|+ |+||++||+.|
T Consensus 495 g~~~~~~g~tn~irv~~v 512 (513)
T PTZ00066 495 GVKEEVAGSSNLMKVVKI 512 (513)
T ss_pred CCCCCCCCCCeEEEEEEc
Confidence 96 78999999986
No 4
>PLN02765 pyruvate kinase
Probab=100.00 E-value=4.6e-124 Score=984.86 Aligned_cols=454 Identities=44% Similarity=0.702 Sum_probs=415.7
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCCC
Q 012335 9 PKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDGK 88 (466)
Q Consensus 9 r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~ 88 (466)
|||||||||||+|+++|+|++|+++||||||||||||++|+|.++++++|++++++++|++||+||||||||+|.+++ +
T Consensus 28 ~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~-~ 106 (526)
T PLN02765 28 ALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTKKLCAVMLDTVGPELQVINKTE-K 106 (526)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCCCCceeeeecCC-C
Confidence 459999999999999999999999999999999999999999999999999999999999999999999999999975 6
Q ss_pred cEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCC--------eEEEEEEEEecCCCeEEEEEeeCeE
Q 012335 89 PIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDG--------TISLTVLDCAKELGLVRCRCENSAV 160 (466)
Q Consensus 89 ~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG--------~i~l~V~~v~~~~~~i~~~v~~gG~ 160 (466)
++.|++||+++|+.+....++++.++++|++|++.+++||+||+||| +|.|+|++++ ++.+.|+|++||.
T Consensus 107 ~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~g~~dg~i~l~V~~~~--~~~v~~~v~~gG~ 184 (526)
T PLN02765 107 PISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEVK--GDDVVCTVKNSAT 184 (526)
T ss_pred cEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccccccCceEEEEEEEEE--CCEEEEEEEeCcE
Confidence 79999999999998754567888999999999999999999999988 8999999985 7789999999999
Q ss_pred ecC-CCccccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCC-CceEEEeecCHHHHhc
Q 012335 161 LGE-RKNVNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAK-NILLMSKVENLEGVAN 238 (466)
Q Consensus 161 l~~-~Kgvnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~-~~~IiaKIE~~~av~n 238 (466)
|++ +||+|+||+.+++|+|||||++||..|++++++|||++||||+++||.++|++|.+.|. +++||||||+++|++|
T Consensus 185 L~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~n 264 (526)
T PLN02765 185 LAGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQTQIFAKIENVEGLTH 264 (526)
T ss_pred ECCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH
Confidence 999 58999999999999999999999834999999999999999999999999999998885 8999999999999999
Q ss_pred HHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh--------
Q 012335 239 FDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-------- 310 (466)
Q Consensus 239 ideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-------- 310 (466)
|+||+++||||||||||||+|+|+|+||.+||+||++|+++|||||+ |||||||++||+|||||++|||||
T Consensus 265 l~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDav 343 (526)
T PLN02765 265 FDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAI 343 (526)
T ss_pred HHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999995 999999999999999999999999
Q ss_pred ---hhhhccchhh-----HHHHHhh------------C-----CCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHH
Q 012335 311 ---AENFINYGDL-----FKKIMET------------A-----PVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 365 (466)
Q Consensus 311 ---aE~~~~~~~~-----~~~~~~~------------~-----~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~ 365 (466)
+|++.+.||. +.++... . ..+.+..+++|.+|+++|..++|++|+|||.||+||+
T Consensus 344 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr 423 (526)
T PLN02765 344 LLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAAR 423 (526)
T ss_pred EecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCCCHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHH
Confidence 7888887762 2222220 0 1122346899999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCC-CCccCHHHHHHHHHHHHHHcCCCCC
Q 012335 366 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARA-SDEESTEETIEFALQHAKAKGLCRP 444 (466)
Q Consensus 366 ~vSk~RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~-~~~~~~e~~i~~al~~~~~~G~~~~ 444 (466)
++|||||.|||+|+|+|..++++++|+++++.++|||+|+|||+|++++..... .|....+.++..|++++++.|++++
T Consensus 424 ~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~~~~~e~~~~~~~~~~~~a~~~~~~~g~~~~ 503 (526)
T PLN02765 424 LIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNESVLKVALDHGKAAGVIKS 503 (526)
T ss_pred HHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEeccccccccccccHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999997688788899999999999999999999999988653211 1223368889999999999999999
Q ss_pred CCEEEEEEecCCCcEEEEEEcC
Q 012335 445 GDSVVALHRMHVASVLKILAVN 466 (466)
Q Consensus 445 GD~VVvv~g~g~tn~irI~~v~ 466 (466)
||.||++++.|+||++||..+.
T Consensus 504 GD~vvv~~~~g~tn~i~v~~v~ 525 (526)
T PLN02765 504 HDRVVVCQKVGDSSVVKIIELD 525 (526)
T ss_pred CCEEEEEecCCCCceEEEEEcC
Confidence 9999999988999999999874
No 5
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=2e-122 Score=967.59 Aligned_cols=436 Identities=44% Similarity=0.677 Sum_probs=408.0
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCC
Q 012335 8 SPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDG 87 (466)
Q Consensus 8 ~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~ 87 (466)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++++|+|++||+||||||||+|.++++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~~~i~Il~Dl~GPkiR~g~~~~~ 80 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKKAAILLDTKGPEIRTMKLEGG 80 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCceeccccCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CcEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCcc
Q 012335 88 KPIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKNV 167 (466)
Q Consensus 88 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kgv 167 (466)
.++.|++||.++|+.+....++++.++++|++|++.+++||.|++|||+|.|+|++++ ++.+.|+|++||.|+++|||
T Consensus 81 ~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~--~~~v~~~v~~~G~l~s~Kgv 158 (470)
T PRK09206 81 NDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAIT--GNEVICKVLNNGDLGENKGV 158 (470)
T ss_pred CeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEe--CCEEEEEEEECCEecCCCce
Confidence 5699999999999987555678889999999999999999999999999999999985 67899999999999999999
Q ss_pred ccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcC-CCceEEEeecCHHHHhcHHHHHhcC
Q 012335 168 NLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHA-KNILLMSKVENLEGVANFDDVLANS 246 (466)
Q Consensus 168 nlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~-~~~~IiaKIE~~~av~nideI~~~s 246 (466)
|+|+..+++|+|||||++|| +|++++|+|||++||||+++||.++++++.+.| .++.||||||+++|++|+|||++++
T Consensus 159 n~p~~~~~lp~ltekD~~di-~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~ 237 (470)
T PRK09206 159 NLPGVSIALPALAEKDKQDL-IFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEAS 237 (470)
T ss_pred eccCcccCCCCCCHHHHHHH-HHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhC
Confidence 99999999999999999999 999999999999999999999999999999887 5899999999999999999999999
Q ss_pred CeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhhc
Q 012335 247 DAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENFI 315 (466)
Q Consensus 247 DgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~~ 315 (466)
|||||||||||+|+|.+++|.+||+|+++|+++|||||+||||||||++||+|||||++||||| +|++.
T Consensus 238 DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~ 317 (470)
T PRK09206 238 DGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAK 317 (470)
T ss_pred CEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred cchhh-----HHHHHhhC------------CC-CCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEE
Q 012335 316 NYGDL-----FKKIMETA------------PV-PMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPIL 377 (466)
Q Consensus 316 ~~~~~-----~~~~~~~~------------~~-~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~~PIi 377 (466)
+.||. +.++.... .. ..+..+++|.+|+++|.+++|++|++||.||+||+++|||||.+|||
T Consensus 318 G~yPveaV~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~~pIi 397 (470)
T PRK09206 318 GKYPLEAVSIMATICERTDRVMNSRLESNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKYFPDATIL 397 (470)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcchhhhhhccccCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEE
Confidence 88773 33332210 00 12457899999999999999999999999999999999999999999
Q ss_pred EEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec---
Q 012335 378 SVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHRM--- 454 (466)
Q Consensus 378 Av~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g~--- 454 (466)
|+ | ++++++|||+|+|||+|++++.. .+.++++..+++++++.|++++||.||+++|+
T Consensus 398 a~-------t------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~~~ 458 (470)
T PRK09206 398 AL-------T------TNEKTARQLVLSKGVVPQLVKEI------ASTDDFYRLGKELALQSGLAQKGDVVVMVSGALVP 458 (470)
T ss_pred EE-------C------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCC
Confidence 99 4 99999999999999999988653 57889999999999999999999999999996
Q ss_pred -CCCcEEEEEEc
Q 012335 455 -HVASVLKILAV 465 (466)
Q Consensus 455 -g~tn~irI~~v 465 (466)
|+||++||+.+
T Consensus 459 ~g~tn~i~v~~~ 470 (470)
T PRK09206 459 SGTTNTASVHVL 470 (470)
T ss_pred CCCCeEEEEEEC
Confidence 89999999863
No 6
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-122 Score=958.68 Aligned_cols=437 Identities=45% Similarity=0.689 Sum_probs=408.1
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCC
Q 012335 7 NSPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKD 86 (466)
Q Consensus 7 ~~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 86 (466)
+.|||||||||||+|+++++|++|+++||||||||||||++++|.+.++++|++++++|+|++||+||||||||+|.+.+
T Consensus 3 ~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR~g~~~~ 82 (477)
T COG0469 3 MMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIRTGKFKG 82 (477)
T ss_pred CCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhCCceEEEEcCCCCcceeEecCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCcEEecCCCEEEEEeCCCC-CCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCC
Q 012335 87 GKPIQLVQGQEITISTDYSL-KGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERK 165 (466)
Q Consensus 87 ~~~i~l~~G~~v~l~~~~~~-~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~K 165 (466)
+.+.|++||+++|+.+... .++.+.++++|+.|+++|++||+||+|||+++|+|.+++ ++.+.|+|.+||.|+++|
T Consensus 83 -~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~--~~~v~~~v~n~G~l~~~K 159 (477)
T COG0469 83 -GAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVD--GDAVITRVLNGGVLSSNK 159 (477)
T ss_pred -CcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEee--CCEEEEEEEeCCCccCCC
Confidence 6799999999999987542 445789999999999999999999999999999999995 567999999999999999
Q ss_pred ccccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCC-CceEEEeecCHHHHhcHHHHHh
Q 012335 166 NVNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAK-NILLMSKVENLEGVANFDDVLA 244 (466)
Q Consensus 166 gvnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~-~~~IiaKIE~~~av~nideI~~ 244 (466)
|||+||..+++|+|||||++|| +|++++|+|||++||||+++|+.++|++|.+.|. +++||||||+++||+|||||++
T Consensus 160 gvN~pg~~l~~palteKD~~dl-~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~ 238 (477)
T COG0469 160 GVNLPGVDLSLPALTEKDKEDL-KFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQEAVDNLDEIIE 238 (477)
T ss_pred ceecCCCCCCCCCCCccCHHHH-HHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999988875 5999999999999999999999
Q ss_pred cCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhh
Q 012335 245 NSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AEN 313 (466)
Q Consensus 245 ~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~ 313 (466)
+||||||||||||+|+|+++||.+||+||++||.+|||||+||||||||++||+|||||++||||| +|+
T Consensus 239 ~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ET 318 (477)
T COG0469 239 ASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGET 318 (477)
T ss_pred hcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred hccchhh-----HHHHHhhCC---------------CCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCC
Q 012335 314 FINYGDL-----FKKIMETAP---------------VPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPS 373 (466)
Q Consensus 314 ~~~~~~~-----~~~~~~~~~---------------~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~ 373 (466)
+.+.||. +.++..... ...+..++++.+++++|..+++++|+++|.||+||+++|||||.
T Consensus 319 A~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~ 398 (477)
T COG0469 319 AAGKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPE 398 (477)
T ss_pred hcCCCHHHHHHHHHHHHHHHhcccchhhhhhhccccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCCCC
Confidence 9888773 333222111 11235789999999999999999999999999999999999999
Q ss_pred CCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEe
Q 012335 374 MPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHR 453 (466)
Q Consensus 374 ~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g 453 (466)
+||+|+ | ++++++|+|+|+|||+|++++.. ..+.++++..+++.+++.|+++.||.||+++|
T Consensus 399 ~pIia~-------t------~~~~v~r~l~l~~GV~p~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~gD~vvit~G 460 (477)
T COG0469 399 APIIAL-------T------PNERVARRLALVWGVYPLLVEEK-----PTSTDEMVEEAVEKLLESGLVKKGDLVVITAG 460 (477)
T ss_pred CcEEEE-------C------CCHHHHhhhceeecceeEEecCC-----CCcHHHHHHHHHHHHHhcCcccCCCEEEEecC
Confidence 999999 4 99999999999999999999742 27889999999999999999999999999999
Q ss_pred c-----CCCcEEEEEEc
Q 012335 454 M-----HVASVLKILAV 465 (466)
Q Consensus 454 ~-----g~tn~irI~~v 465 (466)
. |.||++||+.+
T Consensus 461 ~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 461 VPMGTVGTTNTIKVLTV 477 (477)
T ss_pred cccccCCCceeEEEEeC
Confidence 5 88999999875
No 7
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=5.3e-121 Score=955.74 Aligned_cols=433 Identities=35% Similarity=0.575 Sum_probs=404.5
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCC
Q 012335 7 NSPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKD 86 (466)
Q Consensus 7 ~~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 86 (466)
+.|||||||||||+|+++++|++|+++|||+||||||||++++|+++++++|++++++|++++||+||||||||+|.+++
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~~~ 82 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETGRPIGILADLQGPKLRLGRFAD 82 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeeEEEeCCCCceeccccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCcEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCc
Q 012335 87 GKPIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKN 166 (466)
Q Consensus 87 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kg 166 (466)
++++|++||+++|+.+ ...++++.++++|++|++.+++||.|++|||+|.|+|++++ ++.+.|+|++||.|+++||
T Consensus 83 -~~i~l~~G~~~~l~~~-~~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~--~~~i~~~v~~~G~l~~~Kg 158 (476)
T PRK06247 83 -GKVQLANGQTFRLDVD-DAPGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACD--GDDVVCRVVEGGPVSDRKG 158 (476)
T ss_pred -CcEeccCCCEEEEEec-ccCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEE--CCEEEEEEEeCcEEcCCCc
Confidence 5799999999999987 35678889999999999999999999999999999999985 6789999999999999999
Q ss_pred cccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcC
Q 012335 167 VNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANS 246 (466)
Q Consensus 167 vnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~s 246 (466)
+|+|+..+++|+|||||++|| +|++++|+|||++||||+++||+++|++|+. ++.||||||+++|++|+|||++++
T Consensus 159 vn~p~~~~~~p~ltekD~~di-~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~~---~~~iiaKIEt~eav~nldeI~~~~ 234 (476)
T PRK06247 159 VSLPGTVLSVSALTEKDRADL-EFALELGVDWVALSFVQRPEDVEEVRKIIGG---RVPVMAKIEKPQAIDRLEAIVEAS 234 (476)
T ss_pred cccCCcccCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHhhh---cCeEEEEECCHHHHHhHHHHHHHc
Confidence 999999999999999999999 8999999999999999999999999999953 789999999999999999999999
Q ss_pred CeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhhc
Q 012335 247 DAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENFI 315 (466)
Q Consensus 247 DgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~~ 315 (466)
|||||||||||+|+|++++|.+||+|+++|+++|||||+||||||||++||+|||||++||||| +|++.
T Consensus 235 DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~ 314 (476)
T PRK06247 235 DAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETAS 314 (476)
T ss_pred CEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 79988
Q ss_pred cchhh-----HHHHHhhC--------------CC-CCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCC
Q 012335 316 NYGDL-----FKKIMETA--------------PV-PMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMP 375 (466)
Q Consensus 316 ~~~~~-----~~~~~~~~--------------~~-~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~~P 375 (466)
+.||. +.++.... +. ..+..+++|.+|+++|+.++|++||+||.||+||+++|||||.||
T Consensus 315 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~~isk~RP~~p 394 (476)
T PRK06247 315 GKYPVEAVRTMARIIRQVERDPTYPPLIHAQRPQPEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARERPPLP 394 (476)
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhhhhcccccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHHHHHhhCCCCC
Confidence 87763 22222210 00 124468999999999999999999999999999999999999999
Q ss_pred EEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec-
Q 012335 376 ILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHRM- 454 (466)
Q Consensus 376 IiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g~- 454 (466)
|+|+ | ++++++|+|+|+|||+|++++.. .+.++++..+++++++.|++++||.||+++|+
T Consensus 395 I~a~-------t------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~Gd~vvv~~g~~ 455 (476)
T PRK06247 395 ILAL-------T------PNPETARRLALTWGVHCVVVDDA------RDTDDMVRRADRIALAEGFYKRGDRVVIVAGVP 455 (476)
T ss_pred EEEE-------C------CCHHHHHHhhcccCCeeEecCCC------CCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCC
Confidence 9999 4 99999999999999999988653 67889999999999999999999999999996
Q ss_pred ----CCCcEEEEEEcC
Q 012335 455 ----HVASVLKILAVN 466 (466)
Q Consensus 455 ----g~tn~irI~~v~ 466 (466)
|.||++||.+|+
T Consensus 456 ~~~~g~tn~i~v~~v~ 471 (476)
T PRK06247 456 PGTPGSTNMLRIAYIG 471 (476)
T ss_pred CCCCCCCeEEEEEEeC
Confidence 789999999873
No 8
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=4.9e-119 Score=966.11 Aligned_cols=436 Identities=41% Similarity=0.634 Sum_probs=407.1
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCC
Q 012335 8 SPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDG 87 (466)
Q Consensus 8 ~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~ 87 (466)
.|||||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++++|+|++||+||||||||+|.+++
T Consensus 7 ~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~- 85 (590)
T PRK06354 7 MRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGKTVGILQDLQGPKIRLGRFED- 85 (590)
T ss_pred CCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCceeccccCC-
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CcEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCcc
Q 012335 88 KPIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKNV 167 (466)
Q Consensus 88 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kgv 167 (466)
+++.|++||+++|+.+ ...++++.++++|++|++.+++||.||+|||+|.|+|++++.+++.++|+|.+||.|+++|||
T Consensus 86 ~~i~l~~G~~~~l~~~-~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kgv 164 (590)
T PRK06354 86 GPIELKTGDEFILTSR-EVLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKADGELHCKVLVGGVLSNKKGV 164 (590)
T ss_pred CcEEecCCCEEEEEec-ccCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCcc
Confidence 5799999999999987 346788899999999999999999999999999999999865578999999999999999999
Q ss_pred ccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHh-cCCCceEEEeecCHHHHhcHHHHHhcC
Q 012335 168 NLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRV-HAKNILLMSKVENLEGVANFDDVLANS 246 (466)
Q Consensus 168 nlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~-~~~~~~IiaKIE~~~av~nideI~~~s 246 (466)
|+|+..+++|+|||||++|| +|++++++|||++||||+++||.++|+++.+ .+.++.||||||+++|++|+|||++++
T Consensus 165 n~p~~~~~~p~ltekD~~di-~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~ 243 (590)
T PRK06354 165 NFPGVSLSLPAITEKDREDL-IFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELC 243 (590)
T ss_pred cccCCccCCCCCCHHHHHHH-HHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhc
Confidence 99999999999999999999 8999999999999999999999999999954 478999999999999999999999999
Q ss_pred CeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhhc
Q 012335 247 DAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENFI 315 (466)
Q Consensus 247 DgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~~ 315 (466)
|||||||||||+|+|.+++|.+||+|+++|+++|||||+||||||||++||+|||||++||||| +|++.
T Consensus 244 DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~ 323 (590)
T PRK06354 244 DGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAA 323 (590)
T ss_pred CEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 78888
Q ss_pred cchhh-----HHHHHhhC--------------CCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCE
Q 012335 316 NYGDL-----FKKIMETA--------------PVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPI 376 (466)
Q Consensus 316 ~~~~~-----~~~~~~~~--------------~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~~PI 376 (466)
+.||. +.++.... ....+..+++|.+|+++|.+++|++|++||.||+||+++|||||.|||
T Consensus 324 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI 403 (590)
T PRK06354 324 GDYPVEAVQTMATIAVRIEKDLPYRDILSKRPEFTTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTPI 403 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchhhhhhhccccCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCCCCCE
Confidence 87762 33322210 001245689999999999999999999999999999999999999999
Q ss_pred EEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec--
Q 012335 377 LSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHRM-- 454 (466)
Q Consensus 377 iAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g~-- 454 (466)
||+ | +++.++|||+|+|||+|++.+.. .+.+++++.+++++++.|++++||.||+++|.
T Consensus 404 ~a~-------t------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~g~~~ 464 (590)
T PRK06354 404 LAV-------T------PNESVARRLQLVWGVTPLLVLDA------PSTDETFDAAINVAQESGLLKQGDLVVITAGTLV 464 (590)
T ss_pred EEE-------C------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCC
Confidence 999 4 99999999999999999998653 56889999999999999999999999999985
Q ss_pred ---CCCcEEEEEEc
Q 012335 455 ---HVASVLKILAV 465 (466)
Q Consensus 455 ---g~tn~irI~~v 465 (466)
|+||++||+.+
T Consensus 465 ~~~g~tn~~~v~~v 478 (590)
T PRK06354 465 GESGSTDLMKVHVV 478 (590)
T ss_pred CcCCCceeEEEEEe
Confidence 89999999986
No 9
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=8.9e-119 Score=945.17 Aligned_cols=441 Identities=50% Similarity=0.767 Sum_probs=411.3
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCC
Q 012335 8 SPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDG 87 (466)
Q Consensus 8 ~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~ 87 (466)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++++|+|++||+||||||||+|.++++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~~~i~il~Dl~GpkiR~g~~~~~ 80 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGPVAIALDTKGPEIRTGLFKGG 80 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeecccCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcEEecCCCEEEEEeCCC-CCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCC-eEEEEEeeCeEecCCC
Q 012335 88 KPIQLVQGQEITISTDYS-LKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELG-LVRCRCENSAVLGERK 165 (466)
Q Consensus 88 ~~i~l~~G~~v~l~~~~~-~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~-~i~~~v~~gG~l~~~K 165 (466)
+++.|++||+++|+.+.. ..++++.|+++|++|++.+++||.|++|||+|.|+|.+++ ++ .++|+|.+||.|+++|
T Consensus 81 ~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~--~~~~i~~~v~~~G~l~~~k 158 (480)
T cd00288 81 KDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKD--DDKTLVCEVLNGGVLGSRK 158 (480)
T ss_pred CceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEc--CCceEEEEEEeCeEEcCCC
Confidence 479999999999998743 5678889999999999999999999999999999999985 56 8999999999999999
Q ss_pred ccccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc
Q 012335 166 NVNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 166 gvnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~ 245 (466)
|||+|+..+++|+|||||++|| +|++++|+|||++||||+++||+++|+++...|.++.||||||+++|++|+|||+++
T Consensus 159 gin~p~~~~~~p~ltekD~~di-~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~ 237 (480)
T cd00288 159 GVNLPGTDVDLPALSEKDKADL-RFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEA 237 (480)
T ss_pred ceEeeCcccCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh
Confidence 9999999999999999999999 899999999999999999999999999999988899999999999999999999999
Q ss_pred CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhh
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENF 314 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~ 314 (466)
+|||||||||||+++|.++++.+||+|+++|+++|||+|+||||||||++||+|||||++||||| +|++
T Consensus 238 ~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa 317 (480)
T cd00288 238 SDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETA 317 (480)
T ss_pred cCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 7888
Q ss_pred ccchhh-----HHHHHhhC--------------CC---CCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCC
Q 012335 315 INYGDL-----FKKIMETA--------------PV---PMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRP 372 (466)
Q Consensus 315 ~~~~~~-----~~~~~~~~--------------~~---~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP 372 (466)
.+.+|. +.++.... .. ..+..++++.+|+++|+++++++||+||.||+||+++|+|||
T Consensus 318 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP 397 (480)
T cd00288 318 KGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRP 397 (480)
T ss_pred CCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCC
Confidence 887762 23322210 00 113578999999999999999999999999999999999999
Q ss_pred CCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEE
Q 012335 373 SMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALH 452 (466)
Q Consensus 373 ~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~ 452 (466)
.+||||+ | ++++++|+|+|+|||+|++.+.. ...|..+.+++++.+++++++.|++++||.||+++
T Consensus 398 ~~pIiav-------T------~~~~~~r~l~l~~GV~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~~~ 463 (480)
T cd00288 398 NAPIIAV-------T------RNEQTARQLHLYRGVYPVLFEEP-KPGWQEDTDARLKAAVNVAKEKGLLKKGDLVVVVQ 463 (480)
T ss_pred CCCEEEE-------c------CCHHHhhheeeccCcEEEEeccc-ccccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEe
Confidence 9999999 4 99999999999999999988653 33788899999999999999999999999999999
Q ss_pred ec----CCCcEEEEEEc
Q 012335 453 RM----HVASVLKILAV 465 (466)
Q Consensus 453 g~----g~tn~irI~~v 465 (466)
|+ |+||++||.++
T Consensus 464 g~~~~~~~tn~i~v~~~ 480 (480)
T cd00288 464 GWPVGSGSTNTMRILTV 480 (480)
T ss_pred CCCCCCCCCeEEEEEEC
Confidence 97 89999999875
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=5.5e-116 Score=920.88 Aligned_cols=425 Identities=42% Similarity=0.625 Sum_probs=399.4
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCC
Q 012335 7 NSPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKD 86 (466)
Q Consensus 7 ~~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 86 (466)
+.|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|+|++|++||||||||+|.+++
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 81 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKE 81 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCcEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCc
Q 012335 87 GKPIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKN 166 (466)
Q Consensus 87 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kg 166 (466)
+++.|++||+|+|+.++...++++.|++||++|++.+++||.||+|||+|.|+|++++ ++.++|+|++||.|+++||
T Consensus 82 -~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~--~~~v~~~v~~~g~l~s~kg 158 (465)
T PRK05826 82 -GKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVD--GDEVETEVKNGGPLSNNKG 158 (465)
T ss_pred -CcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEe--CCEEEEEEEeCcEecCCce
Confidence 5799999999999988655788899999999999999999999999999999999985 6789999999999999999
Q ss_pred cccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCC-CceEEEeecCHHHHhcHHHHHhc
Q 012335 167 VNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAK-NILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 167 vnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~-~~~IiaKIE~~~av~nideI~~~ 245 (466)
||+|+..+++|+|||+|.++| +|++++|+|+|++|||++++|++++++++.+.|. ++.||||||+++|++|+|||+++
T Consensus 159 vnlp~~~~~lp~lte~D~~~i-~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~ 237 (465)
T PRK05826 159 INIPGGGLSLPALTEKDKADI-KFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEA 237 (465)
T ss_pred eeccCcccCCCCCChhhHHHH-HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHH
Confidence 999999999999999999999 8999999999999999999999999999999987 99999999999999999999999
Q ss_pred CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhh
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENF 314 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~ 314 (466)
+|||||||||||+++|.+++|.+||+|+++|+++|||+|+||||||||++||+|||||++||||| +|++
T Consensus 238 ~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA 317 (465)
T PRK05826 238 SDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETA 317 (465)
T ss_pred cCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred ccchhh-----HHHHHhhC-----------C--CC-CCcHHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHhcCCCC
Q 012335 315 INYGDL-----FKKIMETA-----------P--VP-MSPLESLASSAVRTANCIK-AALILVLTRGGTTAKMVSKYRPSM 374 (466)
Q Consensus 315 ~~~~~~-----~~~~~~~~-----------~--~~-~~~~~~ia~~av~~a~~~~-a~~Ivv~T~sG~ta~~vSk~RP~~ 374 (466)
.+.+|. +.++.... . .. .+..+++|.+|+++|.+++ |++||+||.||+||+++|||||.|
T Consensus 318 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP~~ 397 (465)
T PRK05826 318 AGKYPVEAVEAMARICKGAEKEFSINLSKHRLDRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLISRFRPGA 397 (465)
T ss_pred cCcCHHHHHHHHHHHHHHHHhccchhhhhhhccccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCC
Confidence 887762 22222210 0 01 2457899999999999999 999999999999999999999999
Q ss_pred CEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec
Q 012335 375 PILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHRM 454 (466)
Q Consensus 375 PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g~ 454 (466)
||||+ | ++++++|||+|+|||+|++++.. .+.+.+++.|++++++.|++++||.||+++|+
T Consensus 398 pI~~~-------t------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~gd~vvvv~g~ 458 (465)
T PRK05826 398 PIFAV-------T------RDEKTQRRLALYRGVYPVLFDSA------ADTDDAAEEALRLLLEKGLVESGDLVVVTSGD 458 (465)
T ss_pred CEEEE-------c------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC
Confidence 99999 4 99999999999999999988653 57889999999999999999999999999997
No 11
>PLN02623 pyruvate kinase
Probab=100.00 E-value=1e-114 Score=920.12 Aligned_cols=433 Identities=36% Similarity=0.562 Sum_probs=402.6
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHc-CCceEEEecCCCCeeEeeecC
Q 012335 7 NSPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNT-GILCAVMLDTKGPEIRTGFLK 85 (466)
Q Consensus 7 ~~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~-~~~i~i~~Dl~GpkiR~g~~~ 85 (466)
..|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++. +++++||+||||||||+|.++
T Consensus 108 ~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~~ 187 (581)
T PLN02623 108 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 187 (581)
T ss_pred CCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccCC
Confidence 4579999999999999999999999999999999999999999999999999999986 499999999999999999997
Q ss_pred CCCcEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCC
Q 012335 86 DGKPIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERK 165 (466)
Q Consensus 86 ~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~K 165 (466)
+ ++.|++||+|+|+.+. ..++++.++++|++|++.+++||.||+|||+|.|+|++++ ++.++|+|++||.|+++|
T Consensus 188 ~--~i~l~~G~~v~lt~~~-~~g~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~--~~~v~~~V~~gG~L~s~K 262 (581)
T PLN02623 188 Q--PIMLEEGQEFTFTIKR-GVSTEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLAVKSKT--SDSVKCEVVDGGELKSRR 262 (581)
T ss_pred C--CEEecCCCEEEEecCc-cCCCCCEEeechHHHHhhCCCCCEEEEeCCeEEEEEEEEE--CCEEEEEEEeceEecCCC
Confidence 4 6999999999999863 4678889999999999999999999999999999999985 789999999999999999
Q ss_pred ccccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc
Q 012335 166 NVNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 166 gvnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~ 245 (466)
|||+||..+++|+|||||++|| +|++++++|||++||||+++||+++++++...|.++.||||||+++||+|+|||++.
T Consensus 263 gvNlpg~~~~lp~lTekD~~di-~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g 341 (581)
T PLN02623 263 HLNVRGKSATLPSITEKDWEDI-KFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITA 341 (581)
T ss_pred CCCCCCCcCCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHh
Confidence 9999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhh
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENF 314 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~ 314 (466)
+|||||||||||+++|+++++.+|++|+++|+++|||+|+||||||||+++|.|||||++|++|+ +|++
T Consensus 342 ~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta 421 (581)
T PLN02623 342 SDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETA 421 (581)
T ss_pred CCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 6777
Q ss_pred ccchhh-----HHHHHhhC---------------CCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCC
Q 012335 315 INYGDL-----FKKIMETA---------------PVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSM 374 (466)
Q Consensus 315 ~~~~~~-----~~~~~~~~---------------~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~~ 374 (466)
++.||. +.++.... ..+.+..+++|.+|+++|+.++|+ ||+||+||+||+++|||||.|
T Consensus 422 ~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~a~-Ivv~T~sG~tA~~lSr~RP~~ 500 (581)
T PLN02623 422 HGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMANTLGTS-IIVFTRTGFMAILLSHYRPSG 500 (581)
T ss_pred cCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHHHhcCCc-EEEECCCcHHHHHHHhhCCCC
Confidence 777662 33322210 011234689999999999999999 999999999999999999999
Q ss_pred CEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEe-
Q 012335 375 PILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHR- 453 (466)
Q Consensus 375 PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g- 453 (466)
||||+ | ++++++|||+|+|||+|++.+. ..+.|++++.+++++++.|++++||.||+++|
T Consensus 501 pI~av-------T------~~~~~aR~L~L~~GV~P~~~~~------~~~~e~~i~~a~~~~~~~g~v~~GD~vviv~g~ 561 (581)
T PLN02623 501 TIFAF-------T------NEKRIQQRLALYQGVCPIYMQF------SDDAEETFARALSLLLNKGMVKEGEEVALVQSG 561 (581)
T ss_pred CEEEE-------C------CCHHHHHHhhcccccEEEecCC------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecc
Confidence 99999 4 9999999999999999998754 26789999999999999999999999999986
Q ss_pred -c-----CCCcEEEEEEc
Q 012335 454 -M-----HVASVLKILAV 465 (466)
Q Consensus 454 -~-----g~tn~irI~~v 465 (466)
. |+||+++|++|
T Consensus 562 ~~p~~~~g~tn~i~V~~v 579 (581)
T PLN02623 562 RQPIWRSESTHHIQVRKV 579 (581)
T ss_pred CCCCCCCCCCeEEEEEEe
Confidence 1 78999999886
No 12
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=2.2e-111 Score=880.86 Aligned_cols=415 Identities=40% Similarity=0.645 Sum_probs=380.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCCCcEEecCCCEEEEEeCC--CCCCCccE
Q 012335 35 MNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDGKPIQLVQGQEITISTDY--SLKGDEKM 112 (466)
Q Consensus 35 ~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~l~~~~--~~~~~~~~ 112 (466)
|||||||||||++|+|+++++++|++++++|++++||+||||||||+|.+++ ++++|++||+++|+.+. ...++++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~~~i~il~Dl~GPkiR~g~~~~-~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVG-GEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeccccCC-CcEEecCCCEEEEEeccccccCCCCCE
Confidence 8999999999999999999999999999999999999999999999999975 46999999999999873 34677889
Q ss_pred EeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCccccCCcccCCCCCChhcHHHHHhccC
Q 012335 113 ISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKNVNLPGVIVDLPTLTEKDKEDILNWGV 192 (466)
Q Consensus 113 i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kgvnlp~~~~~lp~lte~D~~di~~~~~ 192 (466)
++++|++|++.+++||.||+|||+|.|+|.+++ +++.+.|+|++||.|+++||||+||..+++|.+|++|.++| +|++
T Consensus 80 i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~-~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI-~~al 157 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYIDDGILILHVQSHE-DEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADL-QFGV 157 (454)
T ss_pred EEecCcccccccCCCCEEEEeCCeEEEEEEEEc-CCceEEEEEecCcEecCCCccccCCCccCCCCCChhhHHHH-HHHH
Confidence 999999999999999999999999999999885 24689999999999999999999999999999999999999 8999
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHH
Q 012335 193 PNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVM 272 (466)
Q Consensus 193 ~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~i 272 (466)
++|+|||++|||++++|++++|++++..|.++.||||||+++||+|||||++.+|||||||||||+|+|.+++|.+||+|
T Consensus 158 d~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~I 237 (454)
T PTZ00300 158 EQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKIL 237 (454)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhhccchhh-----HHHHHhh---------
Q 012335 273 IHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENFINYGDL-----FKKIMET--------- 327 (466)
Q Consensus 273 i~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~~~~~~~-----~~~~~~~--------- 327 (466)
+++|+++|||||+||||||||++||+|||||++||||| +|++.+.||. +.++...
T Consensus 238 i~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~ 317 (454)
T PTZ00300 238 ISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYV 317 (454)
T ss_pred HHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhh
Confidence 99999999999999999999999999999999999999 7888887662 2222210
Q ss_pred --------CCCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEEeccccccccccccCChhhh
Q 012335 328 --------APVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPA 399 (466)
Q Consensus 328 --------~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~~PIiAv~~~~~~tt~~~w~~~~~~~a 399 (466)
.+.+.+..+++|.+|+++|.+++|++|++||.||+||+++|||||.|||||+ | ++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~-------t------~~~~~a 384 (454)
T PTZ00300 318 FFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCV-------T------TRLQTC 384 (454)
T ss_pred hhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------C------CCHHHH
Confidence 0111244789999999999999999999999999999999999999999999 4 999999
Q ss_pred hhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec----CCCcEEEEEEcC
Q 012335 400 RHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHRM----HVASVLKILAVN 466 (466)
Q Consensus 400 R~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g~----g~tn~irI~~v~ 466 (466)
|||+|+|||+|++++.... ....+.++++..+++++++.|++++||.||+++|+ |+||++||+++.
T Consensus 385 r~l~l~~GV~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~~~~~g~tn~i~v~~~~ 454 (454)
T PTZ00300 385 RQLNITQGVESVFFDAERL-GHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIILVS 454 (454)
T ss_pred HHhhcccCcEEEEeccccc-cccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEeC
Confidence 9999999999998764110 11256789999999999999999999999999996 899999999873
No 13
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.3e-112 Score=876.82 Aligned_cols=443 Identities=58% Similarity=0.881 Sum_probs=422.1
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCc-eEEEecCCCCeeEeeecC
Q 012335 7 NSPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGIL-CAVMLDTKGPEIRTGFLK 85 (466)
Q Consensus 7 ~~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~-i~i~~Dl~GpkiR~g~~~ 85 (466)
..++|||+||+||++++.|+|++|+++|||++|+|||||++++|+++++++|++.+.++.. ++||+|++||++|||.++
T Consensus 19 ~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LDtkGpEirtg~~~ 98 (501)
T KOG2323|consen 19 KRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLDTKGPEIRTGDLK 98 (501)
T ss_pred cccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcchhhhhccCCCeEeecccC
Confidence 4568999999999999999999999999999999999999999999999999999988765 999999999999999999
Q ss_pred CCCcEEecCCCEEEEEeCCCCCC-CccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCC
Q 012335 86 DGKPIQLVQGQEITISTDYSLKG-DEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGER 164 (466)
Q Consensus 86 ~~~~i~l~~G~~v~l~~~~~~~~-~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~ 164 (466)
++.+++|++|++++|++++.... .++.+++||+++..+|++||.|++|||.+.+.|+++. .+.+.|+|+|+|.++|+
T Consensus 99 ~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vddgi~s~~V~~~~--~~~~~c~v~n~g~l~s~ 176 (501)
T KOG2323|consen 99 NGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVDDGLISLIVKSVS--KDEVTCRVENGGMLGSR 176 (501)
T ss_pred CCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEECCceeeeEEEEee--cCceEEEEecCcccccc
Confidence 87799999999999999954433 3789999999999999999999999999999999985 44899999999999999
Q ss_pred Cc-cccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHH
Q 012335 165 KN-VNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVL 243 (466)
Q Consensus 165 Kg-vnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~ 243 (466)
|| +|+||...++|+|||+|.+|+ +|++++++|+|++||||.++|+.++|+.|++.|++++||+|||+++|+.|||||+
T Consensus 177 k~~vnlpg~~vdlp~ltekd~~dl-~fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g~~ikiisKIEn~~g~~nfDeIl 255 (501)
T KOG2323|consen 177 KGNVNLPGTHVDLPALTEKDEKDL-KFGVENKVDMIFASFIRKASDVREVRKVLGESGKNIKLISKIENQEGVSNFDEIL 255 (501)
T ss_pred cCcccCCCccccCCccChhhHHHH-hcCCCCCCCEEEeeeeeehHHHHHHHHHhCccCCcceEEEEechhhhhccHHHHH
Confidence 99 999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-------------
Q 012335 244 ANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA------------- 310 (466)
Q Consensus 244 ~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na------------- 310 (466)
.+|||+||+|||||+|+|+|++|.+||.||.+||.+|||||+||||||||+.+|+|||||+|||+||
T Consensus 256 ~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAVLdg~D~vmLsgE 335 (501)
T KOG2323|consen 256 IESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAVLDGADCVMLSGE 335 (501)
T ss_pred HhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHHhccCceEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------hhhhccchhhHHHHHhhCCCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc
Q 012335 311 --------------------AENFINYGDLFKKIMETAPVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY 370 (466)
Q Consensus 311 --------------------aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~ 370 (466)
||+.++|..+|+++....+.|.++.+++|.+|+.+|.+..|.+|+|+|+||++|+++|+|
T Consensus 336 ta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T~sg~~a~lvsky 415 (501)
T KOG2323|consen 336 TAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKCLASAIVVLTKSGYTAILVSKY 415 (501)
T ss_pred hhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhhcceEEEEEecCcccHHHHhcc
Confidence 677788888888887777888899999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEE
Q 012335 371 RPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVA 450 (466)
Q Consensus 371 RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVv 450 (466)
||.|||+++ | ..+..|||++|||||+|+++..++...|+++.|.++++|++.+++.|+++.||.+|+
T Consensus 416 rP~~PIi~v-------t------~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~~g~~k~gd~~vv 482 (501)
T KOG2323|consen 416 RPSVPIISV-------T------RPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGILKKGDVVVV 482 (501)
T ss_pred CCCCCEEEE-------e------ccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHHhcchhhcCCEEEE
Confidence 999999999 4 899999999999999999999777889999999999999999999999999998888
Q ss_pred EEec----CCCcEEEEEEc
Q 012335 451 LHRM----HVASVLKILAV 465 (466)
Q Consensus 451 v~g~----g~tn~irI~~v 465 (466)
+.++ |.+|++++..+
T Consensus 483 v~~~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 483 VNKGKGGASVTNTIRVEKV 501 (501)
T ss_pred EecccCCccceeeEEEeeC
Confidence 8887 89999998764
No 14
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=2.8e-110 Score=883.92 Aligned_cols=432 Identities=47% Similarity=0.723 Sum_probs=399.7
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCCC
Q 012335 9 PKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDGK 88 (466)
Q Consensus 9 r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~ 88 (466)
||||||||+||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|++++||+||||||||+|.+++ +
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~~~~~i~~Dl~GpkiR~g~~~~-~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPVAILLDTKGPEIRTGEIKG-G 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeccccCC-C
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999975 5
Q ss_pred cEEecCCCEEEEEeCC-CCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCcc
Q 012335 89 PIQLVQGQEITISTDY-SLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKNV 167 (466)
Q Consensus 89 ~i~l~~G~~v~l~~~~-~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kgv 167 (466)
++.|++||.|+|+.+. ...++++.|+++|++|++.+++||.|++|||+|.|+|++++ ++.+.|+|.+||.|+++|||
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~--~~~~~~~v~~~g~l~~~kgv 157 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVE--GDKVICEVLNGGTLKSKKGV 157 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEE--CCEEEEEEEeCcEEcCCcee
Confidence 7999999999999874 24577889999999999999999999999999999999985 67899999999999999999
Q ss_pred ccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcC-CCceEEEeecCHHHHhcHHHHHhcC
Q 012335 168 NLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHA-KNILLMSKVENLEGVANFDDVLANS 246 (466)
Q Consensus 168 nlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~-~~~~IiaKIE~~~av~nideI~~~s 246 (466)
|+|+..+++|+|||+|.+|| +|+++.|+|+|++|||++++||+.++++|.+.+ .++.|+|||||++|++|++||++++
T Consensus 158 n~p~~~~~~~~ltekD~~Dl-~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~ 236 (473)
T TIGR01064 158 NLPGADVDLPALSEKDKKDL-KFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEAS 236 (473)
T ss_pred ecCCCccCCCCCCHHHHHHH-HHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhC
Confidence 99999999999999999999 899999999999999999999999999998877 5899999999999999999999999
Q ss_pred CeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhhc
Q 012335 247 DAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENFI 315 (466)
Q Consensus 247 DgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~~ 315 (466)
||+|+|||||++++|.++++.+|++|+.+|+++|||+|+||||||||+.||+|||||++||+|+ +|+++
T Consensus 237 dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~ 316 (473)
T TIGR01064 237 DGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAK 316 (473)
T ss_pred CcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 67777
Q ss_pred cchhh-----HHHHHhh-------------C----CCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCC
Q 012335 316 NYGDL-----FKKIMET-------------A----PVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPS 373 (466)
Q Consensus 316 ~~~~~-----~~~~~~~-------------~----~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~ 373 (466)
+.+|. +.++... . ....+..+++|.+|+++|..++|++||+||.||+||+++|||||.
T Consensus 317 G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~ 396 (473)
T TIGR01064 317 GKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPN 396 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCC
Confidence 66552 2222110 0 011245789999999999999999999999999999999999999
Q ss_pred CCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEe
Q 012335 374 MPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHR 453 (466)
Q Consensus 374 ~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g 453 (466)
+||||+ | +++.++|+|+|+|||+|++++.. ..+.++++..+++++++.|++++||.||+++|
T Consensus 397 ~PIiAv-------T------~~~~v~R~L~L~wGV~Pil~~~~-----~~~~~~~i~~a~~~l~~~gl~~~GD~VVvv~g 458 (473)
T TIGR01064 397 APIIAV-------T------PNERVARQLALYWGVFPFLVDEE-----PSDTEARVNKALELLKEKGILKKGDLVVVIQG 458 (473)
T ss_pred CCEEEE-------c------CCHHHHHHhhccCCcEEEEeCCC-----CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Confidence 999999 4 99999999999999999988652 25678899999999999999999999999999
Q ss_pred c------CCCcEEEE
Q 012335 454 M------HVASVLKI 462 (466)
Q Consensus 454 ~------g~tn~irI 462 (466)
+ |+||++||
T Consensus 459 ~~~~~~~~~~n~i~v 473 (473)
T TIGR01064 459 GAPIGGVGGTNTIRV 473 (473)
T ss_pred CCCCCCCCCCeEEeC
Confidence 3 78999885
No 15
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=6.3e-96 Score=743.07 Aligned_cols=302 Identities=37% Similarity=0.618 Sum_probs=290.4
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCCCc
Q 012335 10 KTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDGKP 89 (466)
Q Consensus 10 ~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~~ 89 (466)
+++|||||||+|+++++|++|+++|||+||||||||++++|.++++++|++.+ +++||+||||||||+|.+++ ++
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~----~vaIl~Dl~GPkIR~G~~~~-~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD----SIKILGDVQGPKIRLGEIKG-EQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh----hcceeecCCCCcceecccCC-Cc
Confidence 68999999999999999999999999999999999999999999999999875 48999999999999999975 57
Q ss_pred EEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCcccc
Q 012335 90 IQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKNVNL 169 (466)
Q Consensus 90 i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kgvnl 169 (466)
+.|++||+++|+.+ ...++++.++++|++|++.+++||.||+|||+|.|+|++++ ++.+.|+|.+||.|+++||||+
T Consensus 77 i~l~~G~~v~lt~~-~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~--~~~v~~~v~~gG~L~s~Kgvn~ 153 (352)
T PRK06739 77 ITLQAGDSFILHTQ-PVTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVS--TDKIETKVKTGGNISSHKGVNL 153 (352)
T ss_pred EEecCCCEEEEecC-ccCCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEe--CCEEEEEEeeCcEEcCCCCeec
Confidence 99999999999987 35678889999999999999999999999999999999985 6799999999999999999999
Q ss_pred CCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcC-CCceEEEeecCHHHHhcHHHHHhcCCe
Q 012335 170 PGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHA-KNILLMSKVENLEGVANFDDVLANSDA 248 (466)
Q Consensus 170 p~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~-~~~~IiaKIE~~~av~nideI~~~sDg 248 (466)
|+..+++|+||++|++|| +|++++|+|||++||||+++||.++|++|++.| .+++||||||+++|++||++|+++|||
T Consensus 154 pg~~~~lp~ltekD~~di-~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDg 232 (352)
T PRK06739 154 PGAIVRLPAITEKDKKDI-QFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADG 232 (352)
T ss_pred ccccCCCCCCCHHHHHHH-HHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCE
Confidence 999999999999999999 899999999999999999999999999999876 589999999999999999999999999
Q ss_pred eEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hhhhccc
Q 012335 249 FMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AENFINY 317 (466)
Q Consensus 249 ImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE~~~~~ 317 (466)
|||||||||+|+|+|+||.+||+||..|+++|||||+||||||||++||+|||||++||||| +|++++.
T Consensus 233 imVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~ 312 (352)
T PRK06739 233 IMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGE 312 (352)
T ss_pred EEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 8999998
Q ss_pred hhh
Q 012335 318 GDL 320 (466)
Q Consensus 318 ~~~ 320 (466)
||.
T Consensus 313 yPv 315 (352)
T PRK06739 313 HPI 315 (352)
T ss_pred CHH
Confidence 874
No 16
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=1.4e-96 Score=754.22 Aligned_cols=310 Identities=53% Similarity=0.800 Sum_probs=279.1
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCC
Q 012335 8 SPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDG 87 (466)
Q Consensus 8 ~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~ 87 (466)
.|||||||||||+|+++++|++|+++|||+||||||||++++|+++++++|+++++++.+++||+||+|||||||.+.++
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~~~i~IllDl~GPkIRtg~l~~g 80 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELGKPIAILLDLKGPKIRTGRLKDG 80 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTTTS-EEEEEE-TS-EBB-BBTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccCCceEEEeccCCCcceeeeeccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred -CcEEecCCCEEEEEeCCC--CCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCe-EEEEEeeCeEecC
Q 012335 88 -KPIQLVQGQEITISTDYS--LKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGL-VRCRCENSAVLGE 163 (466)
Q Consensus 88 -~~i~l~~G~~v~l~~~~~--~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~-i~~~v~~gG~l~~ 163 (466)
.+++|++||+|+|+.+.. ..++++.|++||++|++.+++||+||+|||+|.|+|++++ ++. +.|+|.+||.|++
T Consensus 81 ~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~--~~~~i~~~v~~~G~L~~ 158 (348)
T PF00224_consen 81 KKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVD--GDSSIKCEVLNGGKLKS 158 (348)
T ss_dssp SSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEE--STEEEEEEESS-EEEES
T ss_pred cccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEc--CCcceeEEeCCCCCccC
Confidence 379999999999998844 3456889999999999999999999999999999999996 556 9999999999999
Q ss_pred CCccccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHH
Q 012335 164 RKNVNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVL 243 (466)
Q Consensus 164 ~Kgvnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~ 243 (466)
+||||+|+.++++|+||++|++|| +|++++|+|||++|||++++||.++|++|.+.|++++||||||+++|++||+||+
T Consensus 159 ~KgVnlp~~~~~lp~LtekD~~di-~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~ 237 (348)
T PF00224_consen 159 RKGVNLPGVDLDLPALTEKDKEDI-KFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIETKEAVENLDEIL 237 (348)
T ss_dssp SEBEEETTS---S-SS-HHHHHHH-HHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHH
T ss_pred CccceecccccccccCCHHHHHHH-HHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccccHHHHhhHHHHh
Confidence 999999999999999999999999 8999999999999999999999999999999899999999999999999999999
Q ss_pred hcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-----------hh
Q 012335 244 ANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA-----------AE 312 (466)
Q Consensus 244 ~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-----------aE 312 (466)
++||||||||||||+|+|++++|.+||+|+++|+++|||||+||||||||+++|+|||||++||||| +|
T Consensus 238 ~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~E 317 (348)
T PF00224_consen 238 EASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGE 317 (348)
T ss_dssp HHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHH
T ss_pred hhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred hhccchhh
Q 012335 313 NFINYGDL 320 (466)
Q Consensus 313 ~~~~~~~~ 320 (466)
++++.+|.
T Consensus 318 Ta~G~~p~ 325 (348)
T PF00224_consen 318 TAIGKYPV 325 (348)
T ss_dssp HHTSSSHH
T ss_pred cCCCCCHH
Confidence 99998774
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=3.9e-88 Score=716.71 Aligned_cols=305 Identities=31% Similarity=0.472 Sum_probs=288.2
Q ss_pred CCCCCCCCeEEEEecC-CCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEe
Q 012335 3 GDHQNSPKTKIVCTLG-PASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRT 81 (466)
Q Consensus 3 ~~~~~~r~tkIi~TiG-p~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~ 81 (466)
|..+..|+|||||||| |++++++.|++|+++||||||||||||++++|+++|+++|++++++|++|+|++||+||||||
T Consensus 133 G~~~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~gr~~~I~mDL~GPKiRt 212 (608)
T PRK14725 133 GPPPSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELGRRCRIAMDLAGPKLRT 212 (608)
T ss_pred CCCCCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcceE
Confidence 3446789999999999 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCC-------------------------------------------------------------------------
Q 012335 82 GFLKDGK------------------------------------------------------------------------- 88 (466)
Q Consensus 82 g~~~~~~------------------------------------------------------------------------- 88 (466)
|.++++.
T Consensus 213 G~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R~l~V~~~ 292 (608)
T PRK14725 213 GPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFTDARGKKRKLTVTEV 292 (608)
T ss_pred EecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCceeeeeeccccceeeeEEee
Confidence 9998642
Q ss_pred ---------------------------------------cEEecCCCEEEEEeCCCC----CCCcc--EEeecchhhhhc
Q 012335 89 ---------------------------------------PIQLVQGQEITISTDYSL----KGDEK--MISMSYKKLAED 123 (466)
Q Consensus 89 ---------------------------------------~i~l~~G~~v~l~~~~~~----~~~~~--~i~v~~~~~~~~ 123 (466)
.+.|++||+++|+.+... .++.. .|+|+|+++++.
T Consensus 293 ~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i~~t~p~l~~~ 372 (608)
T PRK14725 293 DDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGDAPPARISCTLPEAFRA 372 (608)
T ss_pred cCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccCCCCccEEEechHHHHHh
Confidence 589999999999987321 12345 899999999999
Q ss_pred cCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEee----CeEecCCCccccCCcccCCCCCChhcHHHHHhccCcCCCcEE
Q 012335 124 LRPGSVILCSDGTISLTVLDCAKELGLVRCRCEN----SAVLGERKNVNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMI 199 (466)
Q Consensus 124 v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~----gG~l~~~Kgvnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v 199 (466)
+++||.|++|||+|.|+|.+++ ++.+.|+|.+ ||.|+++||||+|+..+++|+||+||++|| +|++++ +|||
T Consensus 373 v~~G~~VlidDG~I~l~V~~~~--~~~v~~~V~~a~~~gg~L~s~KGiNlP~~~l~lp~LTekD~~dl-~f~~~~-vD~V 448 (608)
T PRK14725 373 ARVGERVWFDDGKIGAVVVKVE--ADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDKDLEDL-AFVAKH-ADIV 448 (608)
T ss_pred cCCCCEEEEeCCeEEEEEEEEE--CCEEEEEEEEecCCCCEecCCCceecCCCCCCCCCCCHHHHHHH-HHHHHh-CCEE
Confidence 9999999999999999999985 6789999999 999999999999999999999999999999 999999 9999
Q ss_pred EEcCCCChhhHHHHHHHHHhcC-CCceEEEeecCHHHHhcHHHHHhcC-----CeeEEeCCcccCcCCchhHHHHHHHHH
Q 012335 200 ALSFVRKGSDLVEVRNLLRVHA-KNILLMSKVENLEGVANFDDVLANS-----DAFMVARGDLGMEIPIEKIFLAQKVMI 273 (466)
Q Consensus 200 ~~sfV~sa~dv~~~r~~l~~~~-~~~~IiaKIE~~~av~nideI~~~s-----DgImiaRgDLg~e~~~e~v~~~qk~ii 273 (466)
++|||++++||..+|++|.+.| .++.|||||||++|++||+||+.++ |||||||||||+|+|+++||.+||+||
T Consensus 449 alSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii 528 (608)
T PRK14725 449 ALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEIL 528 (608)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHHHHHHHHH
Confidence 9999999999999999999876 5899999999999999999999987 999999999999999999999999999
Q ss_pred HHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhh
Q 012335 274 HKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAA 311 (466)
Q Consensus 274 ~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naa 311 (466)
..|+++|||||+||||||||++||+|||||++|||||.
T Consensus 529 ~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv 566 (608)
T PRK14725 529 WLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL 566 (608)
T ss_pred HHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh
Confidence 99999999999999999999999999999999999993
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=1.5e-85 Score=692.56 Aligned_cols=304 Identities=29% Similarity=0.461 Sum_probs=286.5
Q ss_pred CCCCCCCCeEEEEec-CCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEe
Q 012335 3 GDHQNSPKTKIVCTL-GPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRT 81 (466)
Q Consensus 3 ~~~~~~r~tkIi~Ti-Gp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~ 81 (466)
|..+..|+||||||| ||+++++++|++|+++||||||||||||++++|+++|+++|++++++|++|+||+||+||||||
T Consensus 127 g~~~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g~~i~Il~DL~GPKIRt 206 (493)
T PRK08187 127 GPRPAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATGRRCKILMDLAGPKIRT 206 (493)
T ss_pred CCCcCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCceee
Confidence 344677999999999 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC-CcEEecCCCEEEEEeCCCCC---CCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEe-
Q 012335 82 GFLKDG-KPIQLVQGQEITISTDYSLK---GDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCE- 156 (466)
Q Consensus 82 g~~~~~-~~i~l~~G~~v~l~~~~~~~---~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~- 156 (466)
|.++++ +++.|++||.|+|+.+.... ++...|+++|+++++.+++||.|++|||+|.|+|++++ ++.+.|+|.
T Consensus 207 G~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l~V~~v~--~~~v~~~V~~ 284 (493)
T PRK08187 207 GAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGARVERVG--PGGALLEVTH 284 (493)
T ss_pred cccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEe--CCEEEEEEEE
Confidence 999853 35999999999999874222 24578999999999999999999999999999999985 678999998
Q ss_pred ---eCeEecCCCccccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcC----CCceEEEe
Q 012335 157 ---NSAVLGERKNVNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHA----KNILLMSK 229 (466)
Q Consensus 157 ---~gG~l~~~Kgvnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~----~~~~IiaK 229 (466)
+||.|+++||||+|+..+++|.||++|.+|| +|+++ ++|+|++|||++++||..++++|.+.+ .++.||||
T Consensus 285 ~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL-~f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaK 362 (493)
T PRK08187 285 ARPKGLKLKPEKGLNFPDTALDLPALTEKDRADL-DFVAR-HADLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLK 362 (493)
T ss_pred ecCCCeEecCCCcccccCceecCCCCCHhHHHHH-HHHHh-cCCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEE
Confidence 9999999999999999999999999999999 89988 699999999999999999999998765 48999999
Q ss_pred ecCHHHHhcHHHHHhcCC-----eeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHH
Q 012335 230 VENLEGVANFDDVLANSD-----AFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEA 304 (466)
Q Consensus 230 IE~~~av~nideI~~~sD-----gImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEv 304 (466)
|||++|++|+++|+.++| ||||||||||+|+|++++|.+|++|+.+|+++|||||+||||||||++||+|||||+
T Consensus 363 IET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEv 442 (493)
T PRK08187 363 IETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEM 442 (493)
T ss_pred ECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHH
Confidence 999999999999999888 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHh
Q 012335 305 TDVANA 310 (466)
Q Consensus 305 sDv~na 310 (466)
+|||||
T Consensus 443 tDvAna 448 (493)
T PRK08187 443 TDAAMA 448 (493)
T ss_pred HHHHhh
Confidence 999998
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.95 E-value=1.1e-27 Score=209.17 Aligned_cols=112 Identities=38% Similarity=0.593 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcC
Q 012335 335 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSS 414 (466)
Q Consensus 335 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~ 414 (466)
.|+++.+|+++|++++|++|+++|.||+||+++|||||.|||||+ | ++++++|||+|+|||+|++++
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiav-------t------~~~~~~r~l~l~~GV~p~~~~ 67 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAV-------T------PNESVARQLSLYWGVYPVLIE 67 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEE-------E------SSHHHHHHGGGSTTEEEEECS
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEE-------c------CcHHHHhhhhcccceEEEEec
Confidence 479999999999999999999999999999999999999999999 4 999999999999999999888
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec-----CCCcEEEEEE
Q 012335 415 GSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHRM-----HVASVLKILA 464 (466)
Q Consensus 415 ~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g~-----g~tn~irI~~ 464 (466)
... .+.+++++.++++++++|++++||.||+++|. |.||++||++
T Consensus 68 ~~~-----~~~~~~~~~a~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 68 EFD-----KDTEELIAEALEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp SHS-----HSHHHHHHHHHHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred ccc-----ccHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 741 37999999999999999999999999999995 8999999975
No 20
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.48 E-value=7.6e-14 Score=137.86 Aligned_cols=107 Identities=20% Similarity=0.276 Sum_probs=94.2
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHH--------------------------HHHHhcCCCceEEEeec
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVR--------------------------NLLRVHAKNILLMSKVE 231 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r--------------------------~~l~~~~~~~~IiaKIE 231 (466)
.+++.|...| +.+++.|+++|++|+|+|++|++++. +|+...+.++.++++||
T Consensus 75 Rvp~~~~~~i-~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IE 153 (256)
T PRK10558 75 RVPTNEPVII-KRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIE 153 (256)
T ss_pred ECCCCCHHHH-HHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEEC
Confidence 3455677788 78999999999999999999999974 35556677899999999
Q ss_pred CHHHHhcHHHHHhc--CCeeEEeCCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 232 NLEGVANFDDVLAN--SDAFMVARGDLGMEIPI------EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 232 ~~~av~nideI~~~--sDgImiaRgDLg~e~~~------e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
|++|++|++||+++ .|+++||++||+.+++. +++..+..+++.+|+++|||+.+
T Consensus 154 t~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~ 215 (256)
T PRK10558 154 SQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGI 215 (256)
T ss_pred CHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEE
Confidence 99999999999987 68999999999999985 46888889999999999999875
No 21
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.48 E-value=9.2e-14 Score=136.74 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=93.7
Q ss_pred CChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHH--------------------------HHHhcCCCceEEEeecC
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRN--------------------------LLRVHAKNILLMSKVEN 232 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~--------------------------~l~~~~~~~~IiaKIE~ 232 (466)
+...|...| +.+++.|+++|++|+|+|++|++++.+ |+...|.++.++++|||
T Consensus 69 vp~~~~~~i-~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt 147 (249)
T TIGR03239 69 PPWNEPVII-KRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIES 147 (249)
T ss_pred CCCCCHHHH-HHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECC
Confidence 344567788 789999999999999999999999853 55556778999999999
Q ss_pred HHHHhcHHHHHhc--CCeeEEeCCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 233 LEGVANFDDVLAN--SDAFMVARGDLGMEIPI------EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 233 ~~av~nideI~~~--sDgImiaRgDLg~e~~~------e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
++|++|++||+++ .|+++||++||+.+++. +++..+..+++.+|+++|||+.+
T Consensus 148 ~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~ 208 (249)
T TIGR03239 148 QKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGI 208 (249)
T ss_pred HHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999987 79999999999999986 47778889999999999999985
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.38 E-value=1.3e-12 Score=129.74 Aligned_cols=104 Identities=16% Similarity=0.204 Sum_probs=91.0
Q ss_pred hhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHH---------------------------HhcCCCceEEEeecCH
Q 012335 181 EKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLL---------------------------RVHAKNILLMSKVENL 233 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l---------------------------~~~~~~~~IiaKIE~~ 233 (466)
..|...| +.++|.|+++|++|+|+|+++++++.+.. ...+.++.++++|||+
T Consensus 77 ~~~~~~i-~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~ 155 (267)
T PRK10128 77 EGSKPLI-KQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESK 155 (267)
T ss_pred CCCHHHH-HHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCH
Confidence 3455677 78899999999999999999999886543 3335678899999999
Q ss_pred HHHhcHHHHHhc--CCeeEEeCCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 234 EGVANFDDVLAN--SDAFMVARGDLGMEIPI------EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 234 ~av~nideI~~~--sDgImiaRgDLg~e~~~------e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
+|++|++||+++ .|++++|++||+.+++. +++-.+.++++++|+++|||+.+
T Consensus 156 ~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~ 215 (267)
T PRK10128 156 TALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGF 215 (267)
T ss_pred HHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE
Confidence 999999999988 69999999999999985 57778889999999999999985
No 23
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.32 E-value=2.1e-12 Score=124.67 Aligned_cols=103 Identities=22% Similarity=0.353 Sum_probs=85.5
Q ss_pred hcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc-------CCCceEEEeecCHHHHhcHHHHHhc--CCeeEEe
Q 012335 182 KDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH-------AKNILLMSKVENLEGVANFDDVLAN--SDAFMVA 252 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~-------~~~~~IiaKIE~~~av~nideI~~~--sDgImia 252 (466)
.-.+|| + +++.|+|+|++|+|+|++|++++.+++... +.++.++++|||++||+|+++|++. .|++++|
T Consensus 73 ~~~~Dl-~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G 150 (221)
T PF03328_consen 73 HIERDL-E-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFG 150 (221)
T ss_dssp HHHHHH-H-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-
T ss_pred hhhhhh-h-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeC
Confidence 344567 5 789999999999999999999999998754 2468999999999999999999954 3899999
Q ss_pred CCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 253 RGDLGMEIPI------EKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 253 RgDLg~e~~~------e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
++||+.+++. +++..+.++++.+|+++|||.+..
T Consensus 151 ~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~ 190 (221)
T PF03328_consen 151 PADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDG 190 (221)
T ss_dssp HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred cHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEE
Confidence 9999999987 468889999999999999976643
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.28 E-value=7.5e-12 Score=123.28 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=88.2
Q ss_pred cHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc---------------------------CCCceEEEeecCHHH
Q 012335 183 DKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH---------------------------AKNILLMSKVENLEG 235 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~---------------------------~~~~~IiaKIE~~~a 235 (466)
|..+| +.+++.|+|+|.+|+|+|+++++++.+.+... +.++.++++|||++|
T Consensus 73 ~~~~i-~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~a 151 (249)
T TIGR02311 73 DPVLI-KQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREA 151 (249)
T ss_pred CHHHH-HHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHH
Confidence 44477 78899999999999999999999998877511 125779999999999
Q ss_pred HhcHHHHHhc--CCeeEEeCCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 236 VANFDDVLAN--SDAFMVARGDLGMEIPI------EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 236 v~nideI~~~--sDgImiaRgDLg~e~~~------e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
++|+++|+++ .|++++|++||+.+++. +++..+.+++..+|+.+||+..+
T Consensus 152 v~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi 209 (249)
T TIGR02311 152 LDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGI 209 (249)
T ss_pred HHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceee
Confidence 9999999987 58999999999999986 35667778899999999999986
No 25
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=1e-11 Score=118.82 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=93.4
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHH---------------------------HHHHhcCCCceEEEee
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVR---------------------------NLLRVHAKNILLMSKV 230 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r---------------------------~~l~~~~~~~~IiaKI 230 (466)
.++.-|...| +.+++.|+..+.+|+|+|+|+.+++- +||...|.++-++++|
T Consensus 73 R~p~g~~~~I-kq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqi 151 (255)
T COG3836 73 RPPVGDPVMI-KQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQI 151 (255)
T ss_pred eCCCCCHHHH-HHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEE
Confidence 3455667788 77899999999999999999999974 4666778899999999
Q ss_pred cCHHHHhcHHHHHhc--CCeeEEeCCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 231 ENLEGVANFDDVLAN--SDAFMVARGDLGMEIPI------EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 231 E~~~av~nideI~~~--sDgImiaRgDLg~e~~~------e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
||.+|++|||+|+.+ .|||+||++||+.++|. ++|-.+-..++.+.+++||...+
T Consensus 152 Etr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagi 214 (255)
T COG3836 152 ETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGI 214 (255)
T ss_pred ccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccc
Confidence 999999999999998 69999999999999987 46666667889999999999774
No 26
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.09 E-value=3.2e-10 Score=114.10 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=88.5
Q ss_pred hcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc-------CCCceEEEeecCHHHHhcHHHHHhc---CCeeEE
Q 012335 182 KDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH-------AKNILLMSKVENLEGVANFDDVLAN---SDAFMV 251 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~-------~~~~~IiaKIE~~~av~nideI~~~---sDgImi 251 (466)
....|| +..++.|+++|++|+|++++|++.+.+++... +.++.+++.|||++|+.|+++|+++ .|++++
T Consensus 73 ~~~~di-~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~ 151 (288)
T TIGR01588 73 FGLADI-KAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIAL 151 (288)
T ss_pred hHHHHH-HHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEe
Confidence 344567 56688999999999999999999999887642 2367899999999999999999965 469999
Q ss_pred eCCcccCcCCc------hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 252 ARGDLGMEIPI------EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 252 aRgDLg~e~~~------e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
|..||+.++|. +.+.++..+++.+|+++|+|+|.
T Consensus 152 G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id 191 (288)
T TIGR01588 152 GAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFD 191 (288)
T ss_pred CHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999986 35888899999999999999864
No 27
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.01 E-value=5.6e-10 Score=125.95 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=95.8
Q ss_pred CCCChhcHHHHHhccC-cCCCcE--EEEcCCCChhhHHHHHHHHHhcC-----CCceEEEeecCHHHHhcHHHHHhcCCe
Q 012335 177 PTLTEKDKEDILNWGV-PNKIDM--IALSFVRKGSDLVEVRNLLRVHA-----KNILLMSKVENLEGVANFDDVLANSDA 248 (466)
Q Consensus 177 p~lte~D~~di~~~~~-~~~~d~--v~~sfV~sa~dv~~~r~~l~~~~-----~~~~IiaKIE~~~av~nideI~~~sDg 248 (466)
|.+-....+.| ..++ +.|+.. |++|||+|+++++++++.+...+ .++.++++||+++|+.|+|+|+++.|+
T Consensus 609 ~~lf~~qlraI-~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDf 687 (782)
T TIGR01418 609 EEAFRLECRAI-KRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDG 687 (782)
T ss_pred HHHHHHHHHHH-HHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCE
Confidence 44445667777 5666 789888 99999999999999999987654 248999999999999999999999999
Q ss_pred eEEeCCcccC-cCCc---------------hhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 249 FMVARGDLGM-EIPI---------------EKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 249 ImiaRgDLg~-e~~~---------------e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
++||.+||+. .++. +.|..+.++++++|+++|||+.++.+|-
T Consensus 688 isIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~ 745 (782)
T TIGR01418 688 FSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAP 745 (782)
T ss_pred EEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC
Confidence 9999999996 3332 5788888999999999999999887644
No 28
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=98.98 E-value=8.3e-10 Score=124.63 Aligned_cols=112 Identities=18% Similarity=0.147 Sum_probs=96.2
Q ss_pred CCChhcHHHHHhccCc-CCCcE--EEEcCCCChhhHHHHHHHHHhcC-----CCceEEEeecCHHHHhcHHHHHhcCCee
Q 012335 178 TLTEKDKEDILNWGVP-NKIDM--IALSFVRKGSDLVEVRNLLRVHA-----KNILLMSKVENLEGVANFDDVLANSDAF 249 (466)
Q Consensus 178 ~lte~D~~di~~~~~~-~~~d~--v~~sfV~sa~dv~~~r~~l~~~~-----~~~~IiaKIE~~~av~nideI~~~sDgI 249 (466)
.+-+...+.| ..+++ .|++. |++|||+|+++++++++.+...| .+++++++||+++|+.|+|+|+++.|++
T Consensus 617 ~lf~~qlraI-~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi 695 (795)
T PRK06464 617 EAFALECEAI-KRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGF 695 (795)
T ss_pred HHHHHHHHHH-HHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEE
Confidence 4455667778 67788 79888 99999999999999999987554 3689999999999999999999999999
Q ss_pred EEeCCcccCc-CCc---------------hhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 250 MVARGDLGME-IPI---------------EKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 250 miaRgDLg~e-~~~---------------e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
+||++||+.. ++. +.|..+.++++++|+++|||+.++.+|.
T Consensus 696 ~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a 752 (795)
T PRK06464 696 SIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAP 752 (795)
T ss_pred EECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCC
Confidence 9999999963 332 5777888999999999999999987654
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=98.93 E-value=2.3e-09 Score=117.06 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=96.9
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHh-----------cCCCceEEEeecCHHHHhcHHHHHhc
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRV-----------HAKNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~-----------~~~~~~IiaKIE~~~av~nideI~~~ 245 (466)
|.+-....+.| ..+.+.|...|++|||+++++++++++.+.. .+.++.+.++||++.|+.++|+|++.
T Consensus 366 ~~lf~~QlrAI-~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~ 444 (565)
T TIGR01417 366 EEILRTQLRAI-LRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKE 444 (565)
T ss_pred HHHHHHHHHHH-HHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhh
Confidence 55556677788 6788999999999999999999999988763 23578999999999999999999999
Q ss_pred CCeeEEeCCcccC-----c-----CC------chhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 246 SDAFMVARGDLGM-----E-----IP------IEKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 246 sDgImiaRgDLg~-----e-----~~------~e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
+|+++||..||+. + ++ .+.|..+.++++++|+++||||.++.+|-
T Consensus 445 vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a 505 (565)
T TIGR01417 445 VDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA 505 (565)
T ss_pred CCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC
Confidence 9999999999987 2 43 25777888999999999999999866543
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=98.91 E-value=4e-09 Score=115.13 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=97.4
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHh-----------cCCCceEEEeecCHHHHhcHHHHHhc
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRV-----------HAKNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~-----------~~~~~~IiaKIE~~~av~nideI~~~ 245 (466)
|.+-....+.| ..+.+.|...|++|||.|++++.++++.+.. .+.++.+.++||++.|+.|+|+|++.
T Consensus 367 ~~~f~~QlrAi-lra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~~ 445 (575)
T PRK11177 367 KEILHDQLRAI-LRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAKE 445 (575)
T ss_pred HHHHHHHHHHH-HHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHhh
Confidence 55566677777 6788899999999999999999999987752 23578999999999999999999999
Q ss_pred CCeeEEeCCcccCcC-----C-----------chhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 246 SDAFMVARGDLGMEI-----P-----------IEKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 246 sDgImiaRgDLg~e~-----~-----------~e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
.|++.||..||+.-+ + .+.|..+.++++++|+++||||.++.+|=
T Consensus 446 vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A 506 (575)
T PRK11177 446 VDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELA 506 (575)
T ss_pred CCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC
Confidence 999999999998822 1 25788888999999999999999998864
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.40 E-value=3.3e-07 Score=91.48 Aligned_cols=104 Identities=21% Similarity=0.305 Sum_probs=88.9
Q ss_pred hhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCce---EEEeecCHHHHhcHHHHHhcC---CeeEEeCC
Q 012335 181 EKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNIL---LMSKVENLEGVANFDDVLANS---DAFMVARG 254 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~---IiaKIE~~~av~nideI~~~s---DgImiaRg 254 (466)
+.-.+|| ......++|+|.+|+|+++.|+..+...+........ +++.|||++|+.|..+|..++ .|+.+|-.
T Consensus 67 ~~g~~Dl-~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 67 PWGADDL-AAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred hhhHHHH-HHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 3455566 5557888999999999999999999999886654333 999999999999999999987 79999999
Q ss_pred cccCcCCc-------hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 255 DLGMEIPI-------EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 255 DLg~e~~~-------e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
||..+++. ..+..+..+|+.+|+.+|++.+.
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D 183 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAID 183 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCccc
Confidence 99888875 26778899999999999999864
No 32
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.30 E-value=1.1e-05 Score=86.39 Aligned_cols=211 Identities=16% Similarity=0.193 Sum_probs=131.8
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCC
Q 012335 7 NSPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKD 86 (466)
Q Consensus 7 ~~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 86 (466)
+.||+-| | ||. +..++.+.+.+|++++=++|--+....|+.+++--....+..... +|-..|+ .
T Consensus 65 ~~RRvei--t-gP~--d~km~inAlnsgad~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~----i~~~~~~-------~ 128 (511)
T TIGR01344 65 QDRRVEI--T-GPV--DRKMVINALNAGAKVFMADFEDSSSPTWENVIYGQINLRDAIRGQ----IDFTDPT-------S 128 (511)
T ss_pred cCCeeEE--e-CCC--CHHHHHHHhcCCCCEEEeCcccCCCCCchhHHHHHHHHHHHHhCc----CCCcCCC-------C
Confidence 5677777 3 787 689999999999999999999988666666554333332221110 0111110 0
Q ss_pred CCcEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCc
Q 012335 87 GKPIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKN 166 (466)
Q Consensus 87 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kg 166 (466)
++.+.|+.+-.+.+..- .-+.++++++ .+ | |
T Consensus 129 gk~y~l~~~~~~liVRp-------rG~hl~e~hv----------~~-d-------------------------------g 159 (511)
T TIGR01344 129 GKEYALNARLAVLIVRP-------RGWHLPERHL----------TI-D-------------------------------G 159 (511)
T ss_pred CceeecCCCceEEEEec-------CCCCCCcchh----------cc-C-------------------------------C
Confidence 12233322222222110 0122222211 00 1 1
Q ss_pred cccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc----C---CCceEEEeecCHHHHhcH
Q 012335 167 VNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH----A---KNILLMSKVENLEGVANF 239 (466)
Q Consensus 167 vnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~----~---~~~~IiaKIE~~~av~ni 239 (466)
=-+|+.-++.-.+..+|.+.+. ....| .+|.+|+|++++|+..+.+.+... | ..+++.+.|||+.|+-|+
T Consensus 160 ~~~~~~l~Dfgl~~~hd~~~l~--~~g~G-p~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm 236 (511)
T TIGR01344 160 EAIPGSLFDFGLYFFHNARALL--KKGKG-PYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEM 236 (511)
T ss_pred CcCchHHHHHHHHHHhhHHHHH--hCCCC-CEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhH
Confidence 1234445555555666666652 23346 499999999999999998887643 2 368899999999999999
Q ss_pred HHHHhc----CCeeEEeCCcccCcCC----c----------------hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 240 DDVLAN----SDAFMVARGDLGMEIP----I----------------EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 240 deI~~~----sDgImiaRgDLg~e~~----~----------------e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
+||+.+ +.|+..||.|+..++. . +-+...++.++.+|+++|...|.
T Consensus 237 ~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AId 306 (511)
T TIGR01344 237 DEILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMG 306 (511)
T ss_pred HHHHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccC
Confidence 999976 3599999999984332 1 23344578888999999999885
No 33
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.29 E-value=1.4e-05 Score=85.84 Aligned_cols=210 Identities=14% Similarity=0.176 Sum_probs=132.8
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCC
Q 012335 7 NSPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKD 86 (466)
Q Consensus 7 ~~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 86 (466)
+.||+-| | ||.+ ..++.+.+.+|++++=++|--+....|+..++--....+.....+.- -+-.|
T Consensus 65 ~~RRvei--t-gP~~--~km~~nAlnsgAd~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~i~~-~~~~g---------- 128 (511)
T cd00727 65 QDRRVEI--T-GPVD--RKMVINALNSGAKVFMADFEDANAPTWENQVEGQINLRDAVRGTISF-TSPEG---------- 128 (511)
T ss_pred cCceeEE--e-CCCC--HHHHHHHhcCCCCEEEeCcccCCCCChHHHHHHHHHHHHHhcCCCCc-cCCCC----------
Confidence 5567765 3 7876 89999999999999999999998777776655433333322110000 01111
Q ss_pred CCcEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCc
Q 012335 87 GKPIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKN 166 (466)
Q Consensus 87 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kg 166 (466)
+.+.|.++..+.+..- .-+.++++++ ++ | |
T Consensus 129 -k~y~l~~~~~~l~VRp-------rG~hl~e~hv----------~~-d-------------------------------g 158 (511)
T cd00727 129 -KEYKLNDTPATLIVRP-------RGWHLPEKHV----------LV-D-------------------------------G 158 (511)
T ss_pred -ceeeeCCCCcEEEEec-------CCCCCCcchh----------hc-C-------------------------------C
Confidence 2233322222222211 0011221111 00 1 1
Q ss_pred cccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc----C---CCceEEEeecCHHHHhcH
Q 012335 167 VNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH----A---KNILLMSKVENLEGVANF 239 (466)
Q Consensus 167 vnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~----~---~~~~IiaKIE~~~av~ni 239 (466)
=-+|+.-++.-.+.=+|.+.+.+ ...|+ ||.+|++++++|+..+.+.+... | ..+++.+.|||+.|+-|+
T Consensus 159 ~~~~~~l~Dfgl~~fhd~~~l~~--~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm 235 (511)
T cd00727 159 EPVSGSLFDFGLYFFHNAKALLA--RGSGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEM 235 (511)
T ss_pred ccCcchhhhHHHHHHhhHHHHHh--cCCCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHH
Confidence 12344445554444455555522 22468 99999999999999999888643 2 468899999999999999
Q ss_pred HHHHhcC----CeeEEeCCcccCcCC----c-------h--------hHHHH-HHHHHHHHHHcCCCeEE
Q 012335 240 DDVLANS----DAFMVARGDLGMEIP----I-------E--------KIFLA-QKVMIHKANIQGKPVVT 285 (466)
Q Consensus 240 deI~~~s----DgImiaRgDLg~e~~----~-------e--------~v~~~-qk~ii~~~~~~gkPvi~ 285 (466)
+||+.++ -|+..||.|+..++. . + .+..+ ++.++.+|+++|...|.
T Consensus 236 ~EIa~alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AId 305 (511)
T cd00727 236 DEILYELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMG 305 (511)
T ss_pred HHHHHhccCceEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCccc
Confidence 9999764 499999999988772 1 1 23344 67799999999999875
No 34
>PRK09255 malate synthase; Validated
Probab=98.15 E-value=2.7e-05 Score=83.95 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=85.6
Q ss_pred CCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc----C---CCceEEEeecCHHHHhcHHHH
Q 012335 170 PGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH----A---KNILLMSKVENLEGVANFDDV 242 (466)
Q Consensus 170 p~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~----~---~~~~IiaKIE~~~av~nideI 242 (466)
|+.-++.-.+.=+|.+.+ . ....|+ ||.+|++++++|+..+.+.+... | ..+++.+.|||+.|+-|++||
T Consensus 183 ~~~l~Dfgl~~fhd~~~l-~-~~g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EI 259 (531)
T PRK09255 183 SGSLFDFALYFFHNAKEL-L-AKGSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEI 259 (531)
T ss_pred chhHHHHHHHHHhhHHHH-H-hCCCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHH
Confidence 444455444444566655 2 236777 99999999999999999988643 2 468899999999999999999
Q ss_pred HhcC----CeeEEeCCcccCc----CCc----------------hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 243 LANS----DAFMVARGDLGME----IPI----------------EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 243 ~~~s----DgImiaRgDLg~e----~~~----------------e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
+.++ -|+..||.|+..+ ++. +-+...++.++.+|+++|...|.
T Consensus 260 a~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AId 326 (531)
T PRK09255 260 LYELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMG 326 (531)
T ss_pred HHhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccC
Confidence 9774 4999999999855 221 23333478888999999999875
No 35
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=97.98 E-value=2.7e-05 Score=78.63 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=86.7
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc-----------CCCceEEEeecCHHHHhcHHHHHhc
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH-----------AKNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~-----------~~~~~IiaKIE~~~av~nideI~~~ 245 (466)
|.+-....+.| ..+...|==.|++|||++.+++.++|+++.+. +.++++=++||+|.++--+|++++.
T Consensus 119 p~~f~~QlrAi-lra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~ 197 (293)
T PF02896_consen 119 PELFRTQLRAI-LRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKE 197 (293)
T ss_dssp HHHHHHHHHHH-HHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTT
T ss_pred hhhHHHHHHHH-HHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHH
Confidence 45556667777 45556665579999999999999999987655 2578999999999999999999999
Q ss_pred CCeeEEeCCccc-----Cc---------CC--chhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 246 SDAFMVARGDLG-----ME---------IP--IEKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 246 sDgImiaRgDLg-----~e---------~~--~e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
+|.+-||-.||. ++ .. .+-+...-++++++|+++||||.++.+|-
T Consensus 198 ~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a 258 (293)
T PF02896_consen 198 VDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMA 258 (293)
T ss_dssp SSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGG
T ss_pred CCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCC
Confidence 999999988872 11 11 14667777999999999999999999876
No 36
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=97.95 E-value=0.00027 Score=76.42 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHhcC-------CCceEEEeecCHHHHhcHHHHHhcC-C---eeEEeCCcccCcCCc
Q 012335 194 NKIDMIALSFVRKGSDLVEVRNLLRVHA-------KNILLMSKVENLEGVANFDDVLANS-D---AFMVARGDLGMEIPI 262 (466)
Q Consensus 194 ~~~d~v~~sfV~sa~dv~~~r~~l~~~~-------~~~~IiaKIE~~~av~nideI~~~s-D---gImiaRgDLg~e~~~ 262 (466)
.+--||.+|++++++|+..+.+.+.... ..+++++.|||+.|+.|++||+.++ + |+..||.||..+++.
T Consensus 183 g~gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~ 262 (511)
T cd00480 183 GSGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIK 262 (511)
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhcc
Confidence 3444899999999999999998886532 3689999999999999999999873 4 999999999988842
Q ss_pred -----------h--------h-HHHHHHHHHHHHHHcCCCeE
Q 012335 263 -----------E--------K-IFLAQKVMIHKANIQGKPVV 284 (466)
Q Consensus 263 -----------e--------~-v~~~qk~ii~~~~~~gkPvi 284 (466)
. . +...+++++.+|+++|.+.|
T Consensus 263 ~~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AI 304 (511)
T cd00480 263 TFRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAM 304 (511)
T ss_pred ccccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCcc
Confidence 1 2 55667889999999999975
No 37
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.09 E-value=0.0011 Score=75.26 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=88.0
Q ss_pred CCCChhcHHHHHhccCc-CCCcEEEEcCCCChhhHHHHHHHHHh--------cC---CCceEEEeecCHHHHhcHHHHHh
Q 012335 177 PTLTEKDKEDILNWGVP-NKIDMIALSFVRKGSDLVEVRNLLRV--------HA---KNILLMSKVENLEGVANFDDVLA 244 (466)
Q Consensus 177 p~lte~D~~di~~~~~~-~~~d~v~~sfV~sa~dv~~~r~~l~~--------~~---~~~~IiaKIE~~~av~nideI~~ 244 (466)
|.+-....+.| ..+.. .|==.|++|||.+.+++.++|+++.+ .| .++++=++||+|.++--+|++++
T Consensus 532 ~~~f~~QlrAi-lra~~~~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~ 610 (748)
T PRK11061 532 PEIFLIQVRAM-LRANAATGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLAS 610 (748)
T ss_pred HHHHHHHHHHH-HHHHhhCCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHH
Confidence 33444445555 33333 56667999999999999999988863 13 24779999999999999999999
Q ss_pred cCCeeEEeCCcccC-----cCC-----------chhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 245 NSDAFMVARGDLGM-----EIP-----------IEKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 245 ~sDgImiaRgDLg~-----e~~-----------~e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
.+|.+=||-.||.- +=. .+-|...-++++.+|+++||||-++.+|=
T Consensus 611 ~~DF~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a 672 (748)
T PRK11061 611 RVDFISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMA 672 (748)
T ss_pred hCCEEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCcc
Confidence 99999999999741 111 14667777999999999999999998874
No 38
>PLN02626 malate synthase
Probab=96.84 E-value=0.0027 Score=68.51 Aligned_cols=89 Identities=11% Similarity=0.143 Sum_probs=71.3
Q ss_pred cEEEEcCCCChhhHHHHHHHHHhc----C---CCceEEEeecCHHHHhcHHHHHhcC----CeeEEeCCcc----cCcCC
Q 012335 197 DMIALSFVRKGSDLVEVRNLLRVH----A---KNILLMSKVENLEGVANFDDVLANS----DAFMVARGDL----GMEIP 261 (466)
Q Consensus 197 d~v~~sfV~sa~dv~~~r~~l~~~----~---~~~~IiaKIE~~~av~nideI~~~s----DgImiaRgDL----g~e~~ 261 (466)
-||.+|++++++|++...+++... | ..+++.+.|||..|+-|++||+.++ -|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 599999999999999998887633 2 4789999999999999999999775 4999999999 22221
Q ss_pred --------c-hh----HHHHH---HHHHHHHHHcCCCeEE
Q 012335 262 --------I-EK----IFLAQ---KVMIHKANIQGKPVVT 285 (466)
Q Consensus 262 --------~-e~----v~~~q---k~ii~~~~~~gkPvi~ 285 (466)
- .. .+.++ +.++..|+++|...|.
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIg 332 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMG 332 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCcccc
Confidence 1 12 44444 4999999999999775
No 39
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.014 Score=63.45 Aligned_cols=111 Identities=17% Similarity=0.162 Sum_probs=91.1
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHH-------hcC----CCceEEEeecCHHHHhcHHHHHhc
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLR-------VHA----KNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~-------~~~----~~~~IiaKIE~~~av~nideI~~~ 245 (466)
|.+-....+.| ..|-.+|-=.|++|+|-+.+++..+|+.+. ..| .++++=.+||.|.|.-.+|.+++.
T Consensus 368 ~~if~tQLRAi-lRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lake 446 (574)
T COG1080 368 PEIFRTQLRAI-LRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKE 446 (574)
T ss_pred HHHHHHHHHHH-HHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHh
Confidence 44555556667 567778888999999999999999998774 222 378899999999999999999999
Q ss_pred CCeeEEeCCcccCcCC-----------------chhHHHHHHHHHHHHHHcCCCeEEeehh
Q 012335 246 SDAFMVARGDLGMEIP-----------------IEKIFLAQKVMIHKANIQGKPVVTATQM 289 (466)
Q Consensus 246 sDgImiaRgDLg~e~~-----------------~e~v~~~qk~ii~~~~~~gkPvi~ATqm 289 (466)
.|-+=||-.||. ++- .+-|..+-++.|..++++||||.++.+|
T Consensus 447 vDFfSIGTNDLt-QYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGEl 506 (574)
T COG1080 447 VDFFSIGTNDLT-QYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGEL 506 (574)
T ss_pred CCEeeecccHHH-HHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhh
Confidence 999999999974 221 1467778899999999999999998765
No 40
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=96.38 E-value=0.0089 Score=68.71 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=86.0
Q ss_pred CCCChhcHHHHHhccCc---CCCc---EEEEcCCCChhhHHHHHHHHHhc--------C--CCceEEEeecCHHHHhcHH
Q 012335 177 PTLTEKDKEDILNWGVP---NKID---MIALSFVRKGSDLVEVRNLLRVH--------A--KNILLMSKVENLEGVANFD 240 (466)
Q Consensus 177 p~lte~D~~di~~~~~~---~~~d---~v~~sfV~sa~dv~~~r~~l~~~--------~--~~~~IiaKIE~~~av~nid 240 (466)
|.+-+...+.|...+.+ .|.. -|++|||.+.+++..+|+.+.+. | .+++|=++||+|.|.-.+|
T Consensus 670 pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ad 749 (856)
T TIGR01828 670 PEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTAD 749 (856)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHHH
Confidence 55555666666332222 2632 79999999999999999887632 2 2478999999999999999
Q ss_pred HHHhcCCeeEEeCCcccC------------cC------------Cc-----hhHHHHHHHHHHHHHH--cCCCeEEeehh
Q 012335 241 DVLANSDAFMVARGDLGM------------EI------------PI-----EKIFLAQKVMIHKANI--QGKPVVTATQM 289 (466)
Q Consensus 241 eI~~~sDgImiaRgDLg~------------e~------------~~-----e~v~~~qk~ii~~~~~--~gkPvi~ATqm 289 (466)
+|++.+|.+-||-.||.- .+ |+ +-|....++++++|++ .|+||.++.+|
T Consensus 750 ~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE~ 829 (856)
T TIGR01828 750 KIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGEH 829 (856)
T ss_pred HHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCCC
Confidence 999999999999666531 11 22 3567777899999998 89999998876
Q ss_pred h
Q 012335 290 L 290 (466)
Q Consensus 290 L 290 (466)
-
T Consensus 830 a 830 (856)
T TIGR01828 830 G 830 (856)
T ss_pred c
Confidence 3
No 41
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.00 E-value=0.029 Score=60.45 Aligned_cols=91 Identities=14% Similarity=0.225 Sum_probs=79.0
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhcC-----------------------CCceEEEeecCHHHHhcHHHHHhc----C-
Q 012335 195 KIDMIALSFVRKGSDLVEVRNLLRVHA-----------------------KNILLMSKVENLEGVANFDDVLAN----S- 246 (466)
Q Consensus 195 ~~d~v~~sfV~sa~dv~~~r~~l~~~~-----------------------~~~~IiaKIE~~~av~nideI~~~----s- 246 (466)
.+-.|++||.++++||.++..+..+.+ ..+.||.-+|+.+++.|.++|++. .
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 677899999999999999988877654 134799999999999999999986 1
Q ss_pred ---CeeEEeCCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 247 ---DAFMVARGDLGMEIPI----EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 247 ---DgImiaRgDLg~e~~~----e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
--||+||.|=+.+.|+ -.+..+|.++.+.|.++|.++..
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 1799999999999987 47789999999999999999764
No 42
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=95.21 E-value=0.072 Score=57.39 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=80.4
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHHhcC--------------CCceEEEeecCHHHHhcHHHHHhc----------CCe
Q 012335 193 PNKIDMIALSFVRKGSDLVEVRNLLRVHA--------------KNILLMSKVENLEGVANFDDVLAN----------SDA 248 (466)
Q Consensus 193 ~~~~d~v~~sfV~sa~dv~~~r~~l~~~~--------------~~~~IiaKIE~~~av~nideI~~~----------sDg 248 (466)
...+..+++|+.++++|+.++..++.+.| ..+.|+.-+||.+.+.|.++|++. .--
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 46677899999999999999988776554 157899999999999999999975 138
Q ss_pred eEEeCCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEE
Q 012335 249 FMVARGDLGMEIPI----EKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 249 ImiaRgDLg~e~~~----e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
||+|+.|=+.+-|. -.+..+|.++.+.|+++|.++..
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999987 47889999999999999998764
No 43
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=95.01 E-value=0.081 Score=61.01 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=86.6
Q ss_pred CCCCChhcHHHHHhccCc---CCCc---EEEEcCCCChhhHHHHHHHHH--------hcC--CCceEEEeecCHHHHhcH
Q 012335 176 LPTLTEKDKEDILNWGVP---NKID---MIALSFVRKGSDLVEVRNLLR--------VHA--KNILLMSKVENLEGVANF 239 (466)
Q Consensus 176 lp~lte~D~~di~~~~~~---~~~d---~v~~sfV~sa~dv~~~r~~l~--------~~~--~~~~IiaKIE~~~av~ni 239 (466)
.|.+.+-..+.|.+.+.+ .|.+ -|++|+|.+.+++..+|+.+. +.| .+.+|=.+||.|.|.--.
T Consensus 675 ~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~a 754 (879)
T PRK09279 675 YPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALTA 754 (879)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHhH
Confidence 366666777777433332 4643 499999999999999998653 224 257899999999999999
Q ss_pred HHHHhcCCeeEEeCCcccC------------cC------------Cc-----hhHHHHHHHHHHHHHH--cCCCeEEeeh
Q 012335 240 DDVLANSDAFMVARGDLGM------------EI------------PI-----EKIFLAQKVMIHKANI--QGKPVVTATQ 288 (466)
Q Consensus 240 deI~~~sDgImiaRgDLg~------------e~------------~~-----e~v~~~qk~ii~~~~~--~gkPvi~ATq 288 (466)
|+|++.+|.+-||-.||.- -+ |+ +-|-...+..+++|++ .|+||.++.+
T Consensus 755 d~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICGE 834 (879)
T PRK09279 755 DEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICGE 834 (879)
T ss_pred HHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 9999999999999766531 11 22 3477777889999998 7999999877
Q ss_pred hh
Q 012335 289 ML 290 (466)
Q Consensus 289 mL 290 (466)
+-
T Consensus 835 ~g 836 (879)
T PRK09279 835 HG 836 (879)
T ss_pred Cc
Confidence 53
No 44
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=94.35 E-value=0.21 Score=57.98 Aligned_cols=111 Identities=20% Similarity=0.229 Sum_probs=89.5
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHhcC--C------CceEEEeecCHHHHhcHHHHHhc--C--------------Cee
Q 012335 194 NKIDMIALSFVRKGSDLVEVRNLLRVHA--K------NILLMSKVENLEGVANFDDVLAN--S--------------DAF 249 (466)
Q Consensus 194 ~~~d~v~~sfV~sa~dv~~~r~~l~~~~--~------~~~IiaKIE~~~av~nideI~~~--s--------------DgI 249 (466)
..+..+++|+.++++||.++--++.+.| . .+.|+.-.||.+.++|.++|++. + --|
T Consensus 485 ~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeV 564 (911)
T PRK00009 485 EAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEV 564 (911)
T ss_pred hhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEE
Confidence 4677889999999999999999888766 1 56899999999999999999986 1 279
Q ss_pred EEeCCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHH
Q 012335 250 MVARGDLGMEIPI----EKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEA 304 (466)
Q Consensus 250 miaRgDLg~e~~~----e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEv 304 (466)
|+|+.|=+.+-|. -.+..+|.++.+.|+++|.++..-=-.=.|.-.-.-||-.-+
T Consensus 565 MlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RGGgp~~~ai 623 (911)
T PRK00009 565 MLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRGGGPAYAAI 623 (911)
T ss_pred EeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCChHHHHH
Confidence 9999999988886 488899999999999999998764434444444445554333
No 45
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=93.52 E-value=0.17 Score=55.06 Aligned_cols=116 Identities=19% Similarity=0.200 Sum_probs=88.1
Q ss_pred CCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc-------C----CCceEEEeecCHHHHhcHHHHH
Q 012335 175 DLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH-------A----KNILLMSKVENLEGVANFDDVL 243 (466)
Q Consensus 175 ~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~-------~----~~~~IiaKIE~~~av~nideI~ 243 (466)
+-|.+---..+.+.+.+...|-=-|.+|+|.+.+++++.|+++... + ..++|=+++|-|..+..+|+++
T Consensus 538 DrP~i~~~Q~RAmLrAs~g~g~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~ 617 (756)
T COG3605 538 DRPEIFRIQVRAMLRASAGTGNLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELA 617 (756)
T ss_pred CChhHHHHHHHHHHHhhCCCcCceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHH
Confidence 3344443344444244333444579999999999999999988643 2 2567889999999999999999
Q ss_pred hcCCeeEEeCCccc-----CcCCc-----------hhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 244 ANSDAFMVARGDLG-----MEIPI-----------EKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 244 ~~sDgImiaRgDLg-----~e~~~-----------e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
...|-|=||-.||. ++=+- +.+..+-|+|...|..+|+||-++.+|-
T Consensus 618 ~~vDFvSVGtNDL~QyllAvDR~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA 680 (756)
T COG3605 618 KRVDFVSVGTNDLTQYLLAVDRNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA 680 (756)
T ss_pred hhCCEEEecchHHHHHHHHHhcCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc
Confidence 99999999999974 22222 3566778999999999999999988774
No 46
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.52 E-value=1.5 Score=42.52 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=49.5
Q ss_pred ChhcHHH-HHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEE----eecCHH-HHhcHHHHHhc-CCeeEEe
Q 012335 180 TEKDKED-ILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMS----KVENLE-GVANFDDVLAN-SDAFMVA 252 (466)
Q Consensus 180 te~D~~d-i~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~Iia----KIE~~~-av~nideI~~~-sDgImia 252 (466)
+...+.. . ..+.+.|+|||.++|.. ++..++++.... .+++++ ++.+.+ .++|+.+.++. ++|+.++
T Consensus 141 ~~~~i~~~~-~~a~~~GaD~Ik~~~~~---~~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 141 DPDLIAYAA-RIGAELGADIVKTKYTG---DAESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred CHHHHHHHH-HHHHHHCCCEEEecCCC---CHHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 4444444 3 55788999999999865 455555555432 244433 333433 67889999988 8999999
Q ss_pred CCcccCc
Q 012335 253 RGDLGME 259 (466)
Q Consensus 253 RgDLg~e 259 (466)
|.=+..+
T Consensus 215 ~~i~~~~ 221 (235)
T cd00958 215 RNIFQRP 221 (235)
T ss_pred hhhhcCC
Confidence 9877555
No 47
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=92.67 E-value=3 Score=41.29 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=46.1
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEE--eec---CHHHHhcHHHHHhc-CCeeEEeCCcccCc
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMS--KVE---NLEGVANFDDVLAN-SDAFMVARGDLGME 259 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~Iia--KIE---~~~av~nideI~~~-sDgImiaRgDLg~e 259 (466)
+.+.+.|+|||..||.. ++..++++.... .++|++ -|= -.++++|+.+++++ ++|+-++|.=+..+
T Consensus 163 ~~a~~~GADyikt~~~~---~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~ 234 (258)
T TIGR01949 163 RLGAELGADIVKTPYTG---DIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD 234 (258)
T ss_pred HHHHHHCCCEEeccCCC---CHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence 45678999999999863 566667666533 344444 442 24568899999988 89999987766443
No 48
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=92.64 E-value=0.51 Score=55.20 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=89.8
Q ss_pred CcEEEEcCCCChhhHHHHHHHHHhcC-----CCceEEEeecCHHHHhcHHHHHhc--C---------------CeeEEeC
Q 012335 196 IDMIALSFVRKGSDLVEVRNLLRVHA-----KNILLMSKVENLEGVANFDDVLAN--S---------------DAFMVAR 253 (466)
Q Consensus 196 ~d~v~~sfV~sa~dv~~~r~~l~~~~-----~~~~IiaKIE~~~av~nideI~~~--s---------------DgImiaR 253 (466)
+..+++|+.++++||.++--+..+.| ..+.|+.-.||.++++|.++|++. + --||+|+
T Consensus 546 lg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGY 625 (974)
T PTZ00398 546 LGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGY 625 (974)
T ss_pred cceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEec
Confidence 44578999999999999998887754 257899999999999999999976 1 2799999
Q ss_pred CcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHH
Q 012335 254 GDLGMEIPI----EKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAE 303 (466)
Q Consensus 254 gDLg~e~~~----e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAE 303 (466)
.|=+.+-|. -.+..+|.++.+.|+++|..+..-=-.=.|+-.-.-|+..-
T Consensus 626 SDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~~a 679 (974)
T PTZ00398 626 SDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQHLA 679 (974)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHHH
Confidence 999999886 48889999999999999999877555666666767776543
No 49
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.73 E-value=1.7 Score=45.50 Aligned_cols=63 Identities=10% Similarity=0.166 Sum_probs=46.3
Q ss_pred hccCcCCCcEEEEcC-------CCChhhHHHHHHHHHhcCCCceEEE-eecCHHHHhcHHHHHhcCCeeEEeCCc
Q 012335 189 NWGVPNKIDMIALSF-------VRKGSDLVEVRNLLRVHAKNILLMS-KVENLEGVANFDDVLANSDAFMVARGD 255 (466)
Q Consensus 189 ~~~~~~~~d~v~~sf-------V~sa~dv~~~r~~l~~~~~~~~Iia-KIE~~~av~nideI~~~sDgImiaRgD 255 (466)
+.+.+.|+|+|.+.. ..++.+...+.+++.+. +++||+ .|-+.+....+-+ .=+|+||+|||-
T Consensus 148 ~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~ 218 (368)
T PRK08649 148 PTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGP 218 (368)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCC
Confidence 556899999999854 33333566677777664 588888 8888887766654 458999999986
No 50
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=3 Score=38.34 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCC-CCEEEE
Q 012335 333 SPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPS-MPILSV 379 (466)
Q Consensus 333 ~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~-~PIiAv 379 (466)
.-.+.....|++.|.+++.+-|||.+.||.||++++.+-|. ..++.+
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvV 57 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVV 57 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEE
Confidence 34677788899999999999999999999999999999888 677777
No 51
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.65 E-value=3.3 Score=38.14 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=60.5
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCC-CceEEEeecCH-------HHHhcHHHHHhc-CCeeE
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAK-NILLMSKVENL-------EGVANFDDVLAN-SDAFM 250 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~-~~~IiaKIE~~-------~av~nideI~~~-sDgIm 250 (466)
.....+.+.++..+.|+|+|.+.- +-++.+++.. +. ++++++++=.. +.++..++-.+. +|+++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~---~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~ 83 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP----GYVRLAADAL---AGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEID 83 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH----HHHHHHHHHh---CCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 444445554788899999998885 4444444433 34 68999999554 466666666665 79999
Q ss_pred EeCCcccCcCC--chhHHHHHHHHHHHHHHcCCCeEE
Q 012335 251 VARGDLGMEIP--IEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 251 iaRgDLg~e~~--~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
+... .....+ .+.+...-+++.+.| +.+.|+++
T Consensus 84 v~~~-~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~i 118 (201)
T cd00945 84 VVIN-IGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKV 118 (201)
T ss_pred Eecc-HHHHhCCCHHHHHHHHHHHHHHh-cCCceEEE
Confidence 8521 111111 344455555666665 56899886
No 52
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=86.99 E-value=7.9 Score=41.25 Aligned_cols=210 Identities=16% Similarity=0.108 Sum_probs=109.1
Q ss_pred HHHHHHHHHhCCc-eEEEecCCC-CH----HHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCCCcEEecCCCE
Q 012335 24 VEMAEKLLRAGMN-VARFNFSHG-SH----AYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDGKPIQLVQGQE 97 (466)
Q Consensus 24 ~~~l~~li~~G~~-v~RiN~shg-~~----~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~~i~l~~G~~ 97 (466)
..+|+.|++.|.. +. =+||- .+ +....+-.-....++.+++++...-|.-||+.+- .+ -.|++|+.
T Consensus 45 lpTI~~L~~~gak~vv--l~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~-~i-----~~l~~GeV 116 (417)
T PTZ00005 45 LPTIKYLLEQGAKSVV--LMSHLGRPDGRRVEKYSLKPVVPKLEELLGKKVTFLNDCVGPEVEE-AC-----ANAKNGSV 116 (417)
T ss_pred HHHHHHHHHCCCCEEE--EEecCCCCCCCcCcccCHHHHHHHHHHHHCCCeEECCCCCCHHHHH-HH-----HcCCCCCE
Confidence 4589999999986 42 27882 22 2122233334445667889998888999988652 11 24666766
Q ss_pred EEEEeCCCCCCCcc------EEe-ecc----hhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCc
Q 012335 98 ITISTDYSLKGDEK------MIS-MSY----KKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKN 166 (466)
Q Consensus 98 v~l~~~~~~~~~~~------~i~-v~~----~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kg 166 (466)
+.|-.---..+++. ... =+. ..|.+.+.+---||++|- |-+- ++..-++ -|
T Consensus 117 lLLENvRF~~~Ee~~~~~~~~~~~~~d~~~~~~fa~~LA~l~DiyVNDA---Fg~a--HR~haS~-------------~g 178 (417)
T PTZ00005 117 ILLENLRFHIEEEGKGVDANGNKVKADKEEVKKFRKSLTKLGDIYVNDA---FGTA--HRAHSSM-------------VG 178 (417)
T ss_pred EEEeccccccccccccccccccccCCCHHHHHHHHHHHHhhCCEEEecc---hhhh--hhhcccc-------------cc
Confidence 66542200011110 000 011 236666655445888883 2211 1111011 01
Q ss_pred cccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCc--eEE--EeecCHHHHhcHHHH
Q 012335 167 VNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNI--LLM--SKVENLEGVANFDDV 242 (466)
Q Consensus 167 vnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~--~Ii--aKIE~~~av~nideI 242 (466)
+ |. |. + .. -+.+ ..++..+.+.+..- .++ .|+ ||+.+.-++ ++.+
T Consensus 179 i--~~-----~~-s-----~a-G~lm--------------ekEl~~L~~~~~~p-~rP~vaIlGGaKvsdKi~v--l~~L 227 (417)
T PTZ00005 179 V--DL-----PV-K-----VA-GFLM--------------KKELDYFSKALENP-QRPFLAILGGAKVADKIQL--IKNL 227 (417)
T ss_pred c--CC-----cc-c-----hh-hHHH--------------HHHHHHHHHHhcCC-CCceEEEEcCccHHhHHHH--HHHH
Confidence 1 10 00 0 00 1100 23555556655321 222 222 577665555 7777
Q ss_pred HhcCCeeEEeC--------CcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 243 LANSDAFMVAR--------GDLGMEIPI----EKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 243 ~~~sDgImiaR--------gDLg~e~~~----e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
+..+|.|++|= ..-|.++|- ++....-++|+++|...|+++++-+-..
T Consensus 228 l~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lPvD~~ 287 (417)
T PTZ00005 228 LDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFV 287 (417)
T ss_pred HHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCCceEE
Confidence 88899999872 123444543 3455556799999999999877654443
No 53
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=85.66 E-value=2.2 Score=49.15 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCChhhHHHHHHHHHhcCC--------CceEEEeecCHHHHhcHHHHHhcC----------------Cee
Q 012335 194 NKIDMIALSFVRKGSDLVEVRNLLRVHAK--------NILLMSKVENLEGVANFDDVLANS----------------DAF 249 (466)
Q Consensus 194 ~~~d~v~~sfV~sa~dv~~~r~~l~~~~~--------~~~IiaKIE~~~av~nideI~~~s----------------DgI 249 (466)
..+.-+.+|+.+++.||.++--+.++.|- .+.|+.-.||.+.++|..+|++.- -.|
T Consensus 362 ~~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeV 441 (794)
T PF00311_consen 362 DAIGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEV 441 (794)
T ss_dssp CCEEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEE
T ss_pred hhHHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEE
Confidence 34446789999999999999888877762 378999999999999999999861 279
Q ss_pred EEeCCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCC
Q 012335 250 MVARGDLGMEIPI----EKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPT 300 (466)
Q Consensus 250 miaRgDLg~e~~~----e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PT 300 (466)
|+|-.|=+-+-|. -.+..+|+++.+.|+++|..+.+-=--=.|+-.-.-||
T Consensus 442 MlGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~FHGRGGsvgRGGGp~ 496 (794)
T PF00311_consen 442 MLGYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFFHGRGGSVGRGGGPT 496 (794)
T ss_dssp EEECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEEEESSTCGGCTHHHH
T ss_pred EeccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCcccCCCChH
Confidence 9998887777765 48899999999999999998776433334444444444
No 54
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=85.45 E-value=15 Score=40.58 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=99.1
Q ss_pred hhcHHHHHhccCcCCCcEEEE--cCCCChhhHHHHHHHHHhcCCCceEEEeecC--HHHHhcHHHHHhcCCeeEEeCCcc
Q 012335 181 EKDKEDILNWGVPNKIDMIAL--SFVRKGSDLVEVRNLLRVHAKNILLMSKVEN--LEGVANFDDVLANSDAFMVARGDL 256 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~--sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~--~~av~nideI~~~sDgImiaRgDL 256 (466)
+...+.| ....+.|+|+|-+ +-.+.++.+..+++.|...|.+++++|-|-- .-|+. -++.+|.|=|.+|.+
T Consensus 45 ~atv~Qi-~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~----a~~~vdkiRINPGNi 119 (606)
T PRK00694 45 DGTVRQI-CALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMH----VADFVDKVRINPGNY 119 (606)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHH----HHHhcCceEECCccc
Confidence 3344455 4456789998655 4455566666667777778889999999933 22222 223489999999999
Q ss_pred cCc---------------CCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhhhhccchhhH
Q 012335 257 GME---------------IPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAAENFINYGDLF 321 (466)
Q Consensus 257 g~e---------------~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE~~~~~~~~~ 321 (466)
+-. -.++++..--+.++.+|+++|+|+=+-++ .-.+-
T Consensus 120 ~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN----------------------------~GSL~ 171 (606)
T PRK00694 120 VDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVN----------------------------HGSLS 171 (606)
T ss_pred CCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC----------------------------CcCch
Confidence 861 12356666778999999999999877553 11111
Q ss_pred HHHHhhCCCCCCcHHHHHHHHHHH---HHhcCCcEEEEEcCCchHHHHHHhcC
Q 012335 322 KKIMETAPVPMSPLESLASSAVRT---ANCIKAALILVLTRGGTTAKMVSKYR 371 (466)
Q Consensus 322 ~~~~~~~~~~~~~~~~ia~~av~~---a~~~~a~~Ivv~T~sG~ta~~vSk~R 371 (466)
+++.... . +..++++.||.+- .++.+-.-|++--++-....++..||
T Consensus 172 ~~i~~~y--G-~tpegmVeSAle~~~i~e~~~f~diviS~KsSnv~~mi~Ayr 221 (606)
T PRK00694 172 ERVMQRY--G-DTIEGMVYSALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYR 221 (606)
T ss_pred HHHHHHh--C-CCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHH
Confidence 2222211 1 2456777777654 45566666776666666677777776
No 55
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=84.89 E-value=26 Score=34.86 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=46.0
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeec--C-HHHHhcHHHHHhc-CCeeEEeCCcccCc
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVE--N-LEGVANFDDVLAN-SDAFMVARGDLGME 259 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE--~-~~av~nideI~~~-sDgImiaRgDLg~e 259 (466)
+.+.+.|+|||=.+|.. ++..+++++....-.++.+.=|= | .++++++.+.+++ ++|+.++|.=+.-+
T Consensus 167 ~~a~e~GAD~vKt~~~~---~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~ 238 (267)
T PRK07226 167 RVAAELGADIVKTNYTG---DPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHE 238 (267)
T ss_pred HHHHHHCCCEEeeCCCC---CHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCC
Confidence 45678999999999863 56667776653222344444454 4 3567778787877 78999988766543
No 56
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=83.82 E-value=2.6 Score=45.60 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=64.3
Q ss_pred cCCCcEEEEcCCCChhhHHHHHHHHH----------------hcC-----CCceEEEeecCHHHHhcHHHHHhcC-----
Q 012335 193 PNKIDMIALSFVRKGSDLVEVRNLLR----------------VHA-----KNILLMSKVENLEGVANFDDVLANS----- 246 (466)
Q Consensus 193 ~~~~d~v~~sfV~sa~dv~~~r~~l~----------------~~~-----~~~~IiaKIE~~~av~nideI~~~s----- 246 (466)
-..+-.|.+||+.|++++..+.+++. +.+ +.+.||.-||+..++-|+++|+..-
T Consensus 118 ~~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g 197 (491)
T PF14010_consen 118 VQPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKG 197 (491)
T ss_dssp S-S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT
T ss_pred CcchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhc
Confidence 35678899999999999999866542 111 4788999999999999999999861
Q ss_pred -C----eeEEeCCcccCcCCch----hHHHHHHHHHHHHHHcCCCeE
Q 012335 247 -D----AFMVARGDLGMEIPIE----KIFLAQKVMIHKANIQGKPVV 284 (466)
Q Consensus 247 -D----gImiaRgDLg~e~~~e----~v~~~qk~ii~~~~~~gkPvi 284 (466)
| -+++||.|=++..|+= -+-.+-.++-+...+.|.|+.
T Consensus 198 ~~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~Iy 244 (491)
T PF14010_consen 198 RDPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIY 244 (491)
T ss_dssp ---SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred CCchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 2 7999999999999873 222344555566678888864
No 57
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.79 E-value=4.2 Score=42.33 Aligned_cols=92 Identities=25% Similarity=0.307 Sum_probs=66.8
Q ss_pred hcHHHHHhccCcCCCcEEEEcCC----------CChhhHHHHHHHHHhcCCCceEEEee----cCHHH-HhcHHHHHhc-
Q 012335 182 KDKEDILNWGVPNKIDMIALSFV----------RKGSDLVEVRNLLRVHAKNILLMSKV----ENLEG-VANFDDVLAN- 245 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV----------~sa~dv~~~r~~l~~~~~~~~IiaKI----E~~~a-v~nideI~~~- 245 (466)
.+.+++ ..+++.|+|.|.+++- -+.+|+.+..+++.+.|++..+..-+ +..+. .+-++...+.
T Consensus 14 g~l~~l-~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~G 92 (347)
T COG0826 14 GNLEDL-KAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELG 92 (347)
T ss_pred CCHHHH-HHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcC
Confidence 456777 7888999999988854 57788999999999988755543322 11122 2334555554
Q ss_pred CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcC--CCeEEeehhh
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQG--KPVVTATQML 290 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~g--kPvi~ATqmL 290 (466)
.|+|+++ |+| ++..|++.+ .|+.+.||+-
T Consensus 93 vDaviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~ 123 (347)
T COG0826 93 VDAVIVA--DPG--------------LIMLARERGPDLPIHVSTQAN 123 (347)
T ss_pred CCEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEe
Confidence 6999994 887 478888888 9999999977
No 58
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=83.35 E-value=2.4 Score=44.11 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=41.4
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 9 PKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 9 r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
.+..+-+.+||.-++.+..++|+++|+|++=|.-+||..+...+.++.+|+
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~ 145 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKK 145 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHH
Confidence 356778889999889999999999999999999999998886666665554
No 59
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=83.15 E-value=12 Score=37.25 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeeh
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQ 288 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATq 288 (466)
.++.++++..+. .+.+++-+-+.+.++-+.+ .+|.+.|+-+++- |..++.++.+.||||++.|.
T Consensus 67 gl~~L~~~~~~~--Gl~~~Tev~d~~~v~~~~e---~vdilqIgs~~~~-----------n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 67 GIRYLHEVCQEF--GLLSVSEIMSERQLEEAYD---YLDVIQVGARNMQ-----------NFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHHHHc--CCCEEEeeCCHHHHHHHHh---cCCEEEECccccc-----------CHHHHHHHHccCCeEEEeCC
Confidence 355555655543 5788887777766655544 6999999988774 36678888889999999987
Q ss_pred hhHhhhcCCCCCHHHHHhHHHhhhh
Q 012335 289 MLESMIKSPRPTRAEATDVANAAEN 313 (466)
Q Consensus 289 mLeSM~~~p~PTRAEvsDv~naaE~ 313 (466)
++- | +.|+.+|+|.
T Consensus 131 ~~~--------t---~~e~~~A~e~ 144 (250)
T PRK13397 131 LMA--------T---IEEYLGALSY 144 (250)
T ss_pred CCC--------C---HHHHHHHHHH
Confidence 442 3 5566666554
No 60
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=82.92 E-value=14 Score=39.31 Aligned_cols=158 Identities=17% Similarity=0.240 Sum_probs=81.7
Q ss_pred chhhhhccCCCCEEEEe--------CCeEEEEEEEEecCCCeEEEEEeeCeEec----------CCCccccCCcccCCCC
Q 012335 117 YKKLAEDLRPGSVILCS--------DGTISLTVLDCAKELGLVRCRCENSAVLG----------ERKNVNLPGVIVDLPT 178 (466)
Q Consensus 117 ~~~~~~~v~~Gd~i~id--------dG~i~l~V~~v~~~~~~i~~~v~~gG~l~----------~~Kgvnlp~~~~~lp~ 178 (466)
+..+-..++.|+.|.+. .|.++|.|.++++.+ -|.|. ..+|.-=|....++|.
T Consensus 63 ~~~~~~~~~~G~~v~v~g~~~~y~~~g~~ql~v~~i~~~g---------~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~ 133 (438)
T PRK00286 63 ARRLKFKPEEGMKVLVRGKVSLYEPRGDYQLIVEEIEPAG---------IGALAAAFEQLKEKLAAEGLFDPERKKPLPF 133 (438)
T ss_pred hhcCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEeeeCC---------ccHHHHHHHHHHHHHHHCCCCChhhcCCCCC
Confidence 44555567899998876 688888888776432 02221 1223333333445554
Q ss_pred CChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc--------CCeeE
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN--------SDAFM 250 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~--------sDgIm 250 (466)
+.. -|++=--.+++-+..+...+........+.--==..+|-....+|+++ .|.|+
T Consensus 134 ~p~----------------~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dvii 197 (438)
T PRK00286 134 FPK----------------RIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLI 197 (438)
T ss_pred CCC----------------EEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEE
Confidence 332 133333355666666666665544322222111112222223333322 49999
Q ss_pred EeCCcccCcCCchhHHH-HHHHHHHHHHHcCCCeEEee------hhhHhhhcCCCCCHHH
Q 012335 251 VARGDLGMEIPIEKIFL-AQKVMIHKANIQGKPVVTAT------QMLESMIKSPRPTRAE 303 (466)
Q Consensus 251 iaRgDLg~e~~~e~v~~-~qk~ii~~~~~~gkPvi~AT------qmLeSM~~~p~PTRAE 303 (466)
|+||-=+ .|++.. -...++++..+...|||.|- -++|-.-.--.||...
T Consensus 198 i~RGGGS----~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE~D~tl~D~vAd~ra~TPta 253 (438)
T PRK00286 198 VARGGGS----LEDLWAFNDEAVARAIAASRIPVISAVGHETDFTIADFVADLRAPTPTA 253 (438)
T ss_pred EecCCCC----HHHhhccCcHHHHHHHHcCCCCEEEeccCCCCccHHHHhhhccCCChHH
Confidence 9999532 223322 23456677778899999873 3555555444444433
No 61
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=81.66 E-value=4.1 Score=46.50 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=71.3
Q ss_pred EEEcCCCChhhHHHHHHHHHhcCC------CceEEEeecCHHHHhcHHHHHhcC----------------CeeEEeCCcc
Q 012335 199 IALSFVRKGSDLVEVRNLLRVHAK------NILLMSKVENLEGVANFDDVLANS----------------DAFMVARGDL 256 (466)
Q Consensus 199 v~~sfV~sa~dv~~~r~~l~~~~~------~~~IiaKIE~~~av~nideI~~~s----------------DgImiaRgDL 256 (466)
.++|+.+|+.||.++-=++++.|- .+.|+.--||.+.++|..+|+..- -.||+|-.|=
T Consensus 489 yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDS 568 (910)
T COG2352 489 YIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDS 568 (910)
T ss_pred hhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEeccccc
Confidence 569999999999999999999884 488999999999999999998751 1577776665
Q ss_pred cCcCCc----hhHHHHHHHHHHHHHHcCCCeE
Q 012335 257 GMEIPI----EKIFLAQKVMIHKANIQGKPVV 284 (466)
Q Consensus 257 g~e~~~----e~v~~~qk~ii~~~~~~gkPvi 284 (466)
.-+=|+ -.+..+|+.+++.|+++|.-.=
T Consensus 569 nKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr 600 (910)
T COG2352 569 NKDGGYLAANWALYKAQLALVELCEKAGVELR 600 (910)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhCceEE
Confidence 555554 4788999999999999998753
No 62
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=81.34 E-value=5 Score=40.01 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 207 GSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 207 a~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
.+.+..++++..+. .+.+++-+-+...++-+.+ ..|.+.||-+++. |..++.++.+.||||++.
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~~d~~~~~~l~~---~~d~lkI~s~~~~-----------n~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEVMDPRDVEIVAE---YADILQIGARNMQ-----------NFELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEeeCChhhHHHHHh---hCCEEEECccccc-----------CHHHHHHHhcCCCcEEEe
Confidence 46677788887764 5889998888777766554 4799999988764 344888888999999999
Q ss_pred ehhhHhhhcCCCCCHHHHHhHHHhhhh
Q 012335 287 TQMLESMIKSPRPTRAEATDVANAAEN 313 (466)
Q Consensus 287 TqmLeSM~~~p~PTRAEvsDv~naaE~ 313 (466)
|.|.-+ ..|+-+|+|.
T Consensus 139 ~G~~~t-----------~~e~~~Ave~ 154 (260)
T TIGR01361 139 RGMGNT-----------IEEWLYAAEY 154 (260)
T ss_pred CCCCCC-----------HHHHHHHHHH
Confidence 987643 4566666554
No 63
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=81.27 E-value=7.8 Score=40.70 Aligned_cols=63 Identities=10% Similarity=0.248 Sum_probs=42.4
Q ss_pred hccCcCCCcEEEEc-------CCCChhhHHHHHHHHHhcCCCceEEE-eecCHHHHhcHHHHHhcCCeeEEeCCc
Q 012335 189 NWGVPNKIDMIALS-------FVRKGSDLVEVRNLLRVHAKNILLMS-KVENLEGVANFDDVLANSDAFMVARGD 255 (466)
Q Consensus 189 ~~~~~~~~d~v~~s-------fV~sa~dv~~~r~~l~~~~~~~~Iia-KIE~~~av~nideI~~~sDgImiaRgD 255 (466)
+.+.+.|+|.|++. |+....+-..+.+++.+. +++||+ .+-+.+....+-+ .=+|+||++||-
T Consensus 149 ~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg 219 (369)
T TIGR01304 149 PIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGG 219 (369)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCC
Confidence 55689999999975 333334555666666553 578887 7777666544444 348999998754
No 64
>PRK15452 putative protease; Provisional
Probab=80.37 E-value=5.1 Score=43.08 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=70.1
Q ss_pred hcHHHHHhccCcCCCcEEEEcCC----------CChhhHHHHHHHHHhcCCCceEEEe-ecCHHHHhcH----HHHHhc-
Q 012335 182 KDKEDILNWGVPNKIDMIALSFV----------RKGSDLVEVRNLLRVHAKNILLMSK-VENLEGVANF----DDVLAN- 245 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV----------~sa~dv~~~r~~l~~~~~~~~IiaK-IE~~~av~ni----deI~~~- 245 (466)
.+.+.+ +.|++.|+|.|.+.+- -+.+|+.++.++..+.|.++.+..- |=..+-++.+ +.+.+.
T Consensus 11 g~~e~l-~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 11 GTLKNM-RYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred CCHHHH-HHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 456777 7889999999999431 2447888888888777654433211 2222334333 444443
Q ss_pred CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHc--CCCeEEeehh---------------hHhhhcCCCCCHHHHHhHH
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQ--GKPVVTATQM---------------LESMIKSPRPTRAEATDVA 308 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~--gkPvi~ATqm---------------LeSM~~~p~PTRAEvsDv~ 308 (466)
.|||+|+ |+|+ +..+++. +.|+...||+ ++.++-++-=|..|+.++.
T Consensus 90 vDgvIV~--d~G~--------------l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~ 153 (443)
T PRK15452 90 PDALIMS--DPGL--------------IMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIR 153 (443)
T ss_pred CCEEEEc--CHHH--------------HHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHH
Confidence 6999995 6763 2334443 7799999987 3344556667788888876
No 65
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=79.96 E-value=6.7 Score=39.06 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=52.5
Q ss_pred CcCCCcEEEEcCCCCh--hhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeC-----CcccCcCCchh
Q 012335 192 VPNKIDMIALSFVRKG--SDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVAR-----GDLGMEIPIEK 264 (466)
Q Consensus 192 ~~~~~d~v~~sfV~sa--~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaR-----gDLg~e~~~e~ 264 (466)
...++|.|++|--.+. .++..+++.-...+ .+++ +=+---.+|+.++++.+||.+||. |.....+..++
T Consensus 169 ~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~--~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~R 244 (254)
T PF03437_consen 169 ERGGADAVIVTGKATGEPPDPEKLKRVREAVP--VPVL--VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPER 244 (254)
T ss_pred HhcCCCEEEECCcccCCCCCHHHHHHHHhcCC--CCEE--EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHH
Confidence 3578999999988863 35554444332222 4555 334334589999999999999993 77788888888
Q ss_pred HHHHHHH
Q 012335 265 IFLAQKV 271 (466)
Q Consensus 265 v~~~qk~ 271 (466)
+-.+.+.
T Consensus 245 v~~fm~~ 251 (254)
T PF03437_consen 245 VRRFMEA 251 (254)
T ss_pred HHHHHHH
Confidence 7666554
No 66
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=79.81 E-value=16 Score=37.62 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=61.0
Q ss_pred hhcHHHHHhccCcCCCcEEEEcCCC-ChhhHHHHHHHHHhcCCCceEEE-eecCHHHHhcHHHHHhc-CCeeEEe--CCc
Q 012335 181 EKDKEDILNWGVPNKIDMIALSFVR-KGSDLVEVRNLLRVHAKNILLMS-KVENLEGVANFDDVLAN-SDAFMVA--RGD 255 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~sfV~-sa~dv~~~r~~l~~~~~~~~Iia-KIE~~~av~nideI~~~-sDgImia--RgD 255 (466)
+.+.+.+ +..++.|+|+|.+++-. +.+.+.++-+.+.+.+.+++|++ .+.+.+....+ +++ +|+|.++ .|-
T Consensus 93 ~~~~~~~-~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l---~~aGaD~I~vg~g~G~ 168 (325)
T cd00381 93 EDDKERA-EALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDL---IDAGADGVKVGIGPGS 168 (325)
T ss_pred hhHHHHH-HHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHH---HhcCCCEEEECCCCCc
Confidence 4556666 66788999999886642 22344444444555545678876 67666655444 334 8999984 221
Q ss_pred -------ccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 256 -------LGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 256 -------Lg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
.+. +.+.+ .+-..+.+.|+..+.|||-+-.+-
T Consensus 169 ~~~t~~~~g~--g~p~~-~~i~~v~~~~~~~~vpVIA~GGI~ 207 (325)
T cd00381 169 ICTTRIVTGV--GVPQA-TAVADVAAAARDYGVPVIADGGIR 207 (325)
T ss_pred CcccceeCCC--CCCHH-HHHHHHHHHHhhcCCcEEecCCCC
Confidence 111 11222 222455666777799998665544
No 67
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=78.64 E-value=4 Score=41.96 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=38.7
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 13 IVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 13 Ii~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
+.+.+|+.....+.++.++++|++++=+|++||..+...++++.+|+
T Consensus 85 v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~ 131 (325)
T cd00381 85 VGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKK 131 (325)
T ss_pred EEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 44556765566789999999999999999999998877777777775
No 68
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=78.63 E-value=20 Score=34.64 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=47.2
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHH
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFD 240 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nid 240 (466)
|..|+.|.+.+.+.|.++++..|+++ +..+..+++.|. +.++++.+=|=-|.|-...+
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~ 70 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVN----PSYVPLAKELLK--GTEVRICTVVGFPLGASTTD 70 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHH
Confidence 67899999988788999999999986 778999999885 45788888887777765543
No 69
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=78.28 E-value=6.1 Score=41.04 Aligned_cols=99 Identities=15% Similarity=0.216 Sum_probs=61.6
Q ss_pred HHHHHhccCcCCCcEEE--EcCCCChhhHHHHHHHHHhcCCCceEEEee--cCHHHHhcHHHHHhcCCeeEEeCCcccCc
Q 012335 184 KEDILNWGVPNKIDMIA--LSFVRKGSDLVEVRNLLRVHAKNILLMSKV--ENLEGVANFDDVLANSDAFMVARGDLGME 259 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~--~sfV~sa~dv~~~r~~l~~~~~~~~IiaKI--E~~~av~nideI~~~sDgImiaRgDLg~e 259 (466)
.+.| ....+.|+|.|- ++-.+.++.+.++++.|.+.|.+++++|-| .-.-|+.- + +..|.|=|.+|.++-+
T Consensus 34 v~QI-~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a---~-~~v~kiRINPGNi~~~ 108 (359)
T PF04551_consen 34 VAQI-KRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEA---I-EAVDKIRINPGNIVDE 108 (359)
T ss_dssp HHHH-HHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHH---H-HC-SEEEE-TTTSS--
T ss_pred HHHH-HHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHH---H-HHhCeEEECCCccccc
Confidence 3444 344678999764 455556666666777777788899999999 44445443 3 3389999999999632
Q ss_pred C--CchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 260 I--PIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 260 ~--~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
+ ....+..--+.++++|+++|+|+=+-.
T Consensus 109 ~~~~~g~~~~~~~~vv~~ake~~ipIRIGv 138 (359)
T PF04551_consen 109 FQEELGSIREKVKEVVEAAKERGIPIRIGV 138 (359)
T ss_dssp --SS-SS-HHHHHHHHHHHHHHT-EEEEEE
T ss_pred ccccccchHHHHHHHHHHHHHCCCCEEEec
Confidence 2 123456677899999999999975543
No 70
>PRK15447 putative protease; Provisional
Probab=77.89 E-value=10 Score=38.48 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=61.7
Q ss_pred cHHHHHhccCcCCCcEEEEcCCC-------ChhhHHHHHHHHHhcCCCceE-EEee-cCHHHHhcHHHHHhc-CCeeEEe
Q 012335 183 DKEDILNWGVPNKIDMIALSFVR-------KGSDLVEVRNLLRVHAKNILL-MSKV-ENLEGVANFDDVLAN-SDAFMVA 252 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~sfV~-------sa~dv~~~r~~l~~~~~~~~I-iaKI-E~~~av~nideI~~~-sDgImia 252 (466)
..+++-....+.|+|.|-++... +.+++.++.+.+.+.|+.+.+ +..| -..+-++.+.++++. .|+|++
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v- 94 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA- 94 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE-
Confidence 34455222346799999997442 668899888989888877665 3355 445666777888776 367777
Q ss_pred CCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 253 RGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 253 RgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
+|+|. + ..+++.|.|++..|||=
T Consensus 95 -~d~g~------l--------~~~~e~~~~l~~d~~ln 117 (301)
T PRK15447 95 -NDLGA------V--------RLLAERGLPFVAGPALN 117 (301)
T ss_pred -eCHHH------H--------HHHHhcCCCEEEecccc
Confidence 57663 2 22223499999999873
No 71
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=77.53 E-value=15 Score=38.04 Aligned_cols=87 Identities=11% Similarity=0.128 Sum_probs=67.1
Q ss_pred ccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHH
Q 012335 190 WGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQ 269 (466)
Q Consensus 190 ~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~q 269 (466)
...+.|+|.|-++ |.+.++.+.++++-. +.+++++|-|-- +--..+.++.+-+|.|=|.+|.+|- ..--
T Consensus 42 ~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIHF-d~~lAl~a~~~g~dkiRINPGNig~-------~e~v 110 (346)
T TIGR00612 42 ALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIHF-DYRLAALAMAKGVAKVRINPGNIGF-------RERV 110 (346)
T ss_pred HHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeCC-CcHHHHHHHHhccCeEEECCCCCCC-------HHHH
Confidence 4467999998887 578888888877665 467999999943 2333456677778999999999986 3456
Q ss_pred HHHHHHHHHcCCCeEEee
Q 012335 270 KVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 270 k~ii~~~~~~gkPvi~AT 287 (466)
+.++++|+++|+|+=+-.
T Consensus 111 ~~vv~~ak~~~ipIRIGV 128 (346)
T TIGR00612 111 RDVVEKARDHGKAMRIGV 128 (346)
T ss_pred HHHHHHHHHCCCCEEEec
Confidence 789999999999976543
No 72
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=77.50 E-value=12 Score=41.61 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=71.0
Q ss_pred hhcHHHHHhccCcCCCcEEEEc--CCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccC
Q 012335 181 EKDKEDILNWGVPNKIDMIALS--FVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGM 258 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~s--fV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~ 258 (466)
+...+.| ....+.|+|+|-+. -.+.++.+..+++.+...|.+++++|-|-----+ .+. -++.+|.|=|.+|.++-
T Consensus 41 ~atv~Qi-~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~-A~~-a~~~v~kiRINPGN~~~ 117 (611)
T PRK02048 41 EACVAQA-KRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKV-ADV-AAQYAEKVRINPGNYVD 117 (611)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHH-HHH-HHHhhCCEEECCCcCCC
Confidence 3344455 44567999987554 4455555666666677778899999999432222 122 23348999999999987
Q ss_pred c---C------------CchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 259 E---I------------PIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 259 e---~------------~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
. + .++++..--+.++.+|+++|+|+=+-+
T Consensus 118 ~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGv 161 (611)
T PRK02048 118 PGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGV 161 (611)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEec
Confidence 4 1 234556666789999999999987766
No 73
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=76.54 E-value=14 Score=32.45 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-++.+++.|.+.+....+.+--+.. .-++++++++-+|.|+.+-.+ +.....+-+.|+++++|+|.+.
T Consensus 57 Ka~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 57 KAEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp HHHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4777888888888888877755444 457888999889988887555 3466778889999999998765
No 74
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=74.85 E-value=10 Score=39.74 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 208 SDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 208 ~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
+....++++..+. .+.+++-+-+...++-+.+ .+|.+.||-+++.- ..++..+.+.||||++.|
T Consensus 169 e~l~~L~~~~~~~--Gl~~~t~v~d~~~~~~l~~---~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 169 EGLKILKQVADEY--GLAVISEIVNPADVEVALD---YVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHHHHHHH---hCCeEEECcccccC-----------HHHHHHHHccCCcEEEeC
Confidence 4566677777664 4788888877766655544 49999999888753 367778888999999999
Q ss_pred hhhHhhhcCCCCCHHHHHhHHHhhhh
Q 012335 288 QMLESMIKSPRPTRAEATDVANAAEN 313 (466)
Q Consensus 288 qmLeSM~~~p~PTRAEvsDv~naaE~ 313 (466)
.|.-+ +.|+-+|+|.
T Consensus 233 G~~~t-----------~~e~~~Ave~ 247 (360)
T PRK12595 233 GLSAT-----------IEEFIYAAEY 247 (360)
T ss_pred CCCCC-----------HHHHHHHHHH
Confidence 87533 4566666554
No 75
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=74.11 E-value=22 Score=34.95 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=57.7
Q ss_pred hccCcCCCcEEEE---------------cCCCChhhHHHHHHHHHhcCC--CceEEEeecCH--------HHHhcHHHHH
Q 012335 189 NWGVPNKIDMIAL---------------SFVRKGSDLVEVRNLLRVHAK--NILLMSKVENL--------EGVANFDDVL 243 (466)
Q Consensus 189 ~~~~~~~~d~v~~---------------sfV~sa~dv~~~r~~l~~~~~--~~~IiaKIE~~--------~av~nideI~ 243 (466)
+...+.|+++|.+ ..+...+.+..++........ +..|+|..|.. ++++....-.
T Consensus 91 ~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~ 170 (243)
T cd00377 91 RELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA 170 (243)
T ss_pred HHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence 4556799999999 455566667777776665554 89999996653 4555555556
Q ss_pred hc-CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 244 AN-SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 244 ~~-sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
++ +|++|+-... -.+.+-+.+++...|+.+
T Consensus 171 ~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~ 201 (243)
T cd00377 171 EAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNV 201 (243)
T ss_pred HcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEE
Confidence 66 8999984221 125555566668899876
No 76
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=73.88 E-value=15 Score=36.77 Aligned_cols=91 Identities=20% Similarity=0.175 Sum_probs=58.2
Q ss_pred CChhcHHHHHhccCcCC-CcEEEEcCCCCh--hhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeC--
Q 012335 179 LTEKDKEDILNWGVPNK-IDMIALSFVRKG--SDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVAR-- 253 (466)
Q Consensus 179 lte~D~~di~~~~~~~~-~d~v~~sfV~sa--~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaR-- 253 (466)
|.+.+.++..+.+...+ +|.|++|=..+. -|...++.+-.....-+.+++ +--..+|+.++++.+||++|+-
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvllg---gGvt~eNv~e~l~~adGviVgS~~ 230 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAG---SGVNLENVEELLSIADGVIVATTI 230 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEE---CCCCHHHHHHHHhhCCEEEECCCc
Confidence 45555555434445566 999999998877 556666655322222234444 3344589999999999999994
Q ss_pred ---CcccCcCCchhHHHHHHHH
Q 012335 254 ---GDLGMEIPIEKIFLAQKVM 272 (466)
Q Consensus 254 ---gDLg~e~~~e~v~~~qk~i 272 (466)
|+.......+++-.+++.+
T Consensus 231 K~~G~~~n~~D~~rV~~Fm~~v 252 (257)
T TIGR00259 231 KKDGVFNNFVDQARVSQFVEKV 252 (257)
T ss_pred ccCCccCCCcCHHHHHHHHHHH
Confidence 5444456666766665544
No 77
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=73.37 E-value=22 Score=35.68 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=57.7
Q ss_pred hccCcC-CCcEEEEcC-------CCChhhHHHHHHHHHhcCCCceEEEeec---CHHHHhcHHHHHhc-CCeeEEeCCcc
Q 012335 189 NWGVPN-KIDMIALSF-------VRKGSDLVEVRNLLRVHAKNILLMSKVE---NLEGVANFDDVLAN-SDAFMVARGDL 256 (466)
Q Consensus 189 ~~~~~~-~~d~v~~sf-------V~sa~dv~~~r~~l~~~~~~~~IiaKIE---~~~av~nideI~~~-sDgImiaRgDL 256 (466)
+|.++. |+++|++.= ....|-.+-++..++..+.++.||+-+- +.++++......+. +|++|+.+-..
T Consensus 28 ~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y 107 (288)
T cd00954 28 DYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFY 107 (288)
T ss_pred HHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 788888 999987642 2223333334444555556889999884 34555555555544 79999865544
Q ss_pred cCcCCchhHHHHHHHHHHHHHHc-CCCeEEe
Q 012335 257 GMEIPIEKIFLAQKVMIHKANIQ-GKPVVTA 286 (466)
Q Consensus 257 g~e~~~e~v~~~qk~ii~~~~~~-gkPvi~A 286 (466)
. ...-+++...-+.|. .+. +.|+++-
T Consensus 108 ~-~~~~~~i~~~~~~v~---~a~~~lpi~iY 134 (288)
T cd00954 108 Y-KFSFEEIKDYYREII---AAAASLPMIIY 134 (288)
T ss_pred C-CCCHHHHHHHHHHHH---HhcCCCCEEEE
Confidence 2 233455555555554 455 7899874
No 78
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=73.26 E-value=25 Score=34.51 Aligned_cols=105 Identities=12% Similarity=0.078 Sum_probs=69.2
Q ss_pred hccCcCCCcEEEEcC--CCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEe---CCcccCcCCch
Q 012335 189 NWGVPNKIDMIALSF--VRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVA---RGDLGMEIPIE 263 (466)
Q Consensus 189 ~~~~~~~~d~v~~sf--V~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImia---RgDLg~e~~~e 263 (466)
+.+.+.|+|+|.++. +++.++..++.+.+.+.|-+..+...=+|+ .+.++.+++.+|++++- .|. |..
T Consensus 95 ~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~msv~~~~-g~~---- 167 (244)
T PRK13125 95 NMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIYYGLRPAT-GVP---- 167 (244)
T ss_pred HHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEEEEeCCCC-CCC----
Confidence 566889999999985 466788888889998888766666666663 57789999999988742 334 322
Q ss_pred hHHHHHHHHHHHHHHc--CCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 264 KIFLAQKVMIHKANIQ--GKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 264 ~v~~~qk~ii~~~~~~--gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
++.-....++..++. .+|+.+-- ..=|+..+..+..+
T Consensus 168 -~~~~~~~~i~~lr~~~~~~~i~v~g---------GI~~~e~i~~~~~~ 206 (244)
T PRK13125 168 -LPVSVERNIKRVRNLVGNKYLVVGF---------GLDSPEDARDALSA 206 (244)
T ss_pred -chHHHHHHHHHHHHhcCCCCEEEeC---------CcCCHHHHHHHHHc
Confidence 333344445555554 36765433 34455566655444
No 79
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=72.58 E-value=8.3 Score=44.17 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=75.2
Q ss_pred EEEEcCCCChhhHHHHHHHHH---hcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccC------------cCCc
Q 012335 198 MIALSFVRKGSDLVEVRNLLR---VHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGM------------EIPI 262 (466)
Q Consensus 198 ~v~~sfV~sa~dv~~~r~~l~---~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~------------e~~~ 262 (466)
.+++||+++..+...+. .+. ..+++.++..+||-|.++-..|||++.+|+.=+|-+||.- +...
T Consensus 597 ~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~ 675 (740)
T COG0574 597 EIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERD 675 (740)
T ss_pred EEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccccc
Confidence 57888999999988887 443 1113488999999999999999999999999999999852 2223
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 263 EKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 263 e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
+.+-.+-+..+..|+..++.+.++.|.-
T Consensus 676 ~~v~~li~~a~~~~~~~~~~~~icG~~~ 703 (740)
T COG0574 676 PAVLKLIIIAIKAADSGGLLVGICGQAP 703 (740)
T ss_pred ccHHHHHHHHHhcccccCcEEEEeccCC
Confidence 5777888899999999999999999854
No 80
>PRK08417 dihydroorotase; Provisional
Probab=71.98 E-value=1.3e+02 Score=31.38 Aligned_cols=178 Identities=12% Similarity=0.141 Sum_probs=94.4
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEE-----cCCCChhhHHHHHHHHHhc-CCCceEEEeecCHHHHhcHHHHHhc-CCee
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIAL-----SFVRKGSDLVEVRNLLRVH-AKNILLMSKVENLEGVANFDDVLAN-SDAF 249 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~-----sfV~sa~dv~~~r~~l~~~-~~~~~IiaKIE~~~av~nideI~~~-sDgI 249 (466)
|.++..|.+.....|+..|+-.|+. |.+.+++.+....+..+.. +.......-....+.+..+++..+. ++++
T Consensus 42 ~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~ 121 (386)
T PRK08417 42 DSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELPMQIFPSIRALDEDGKLSNIATLLKKGAKAL 121 (386)
T ss_pred CCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccCCcEEEEEEEECCCccHHHHHHHHHCCCEEE
Confidence 4445555555546678889887765 2344445555555544321 1112222222334445555555432 3444
Q ss_pred EEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhhhhccchhhHHHHHhhCC
Q 012335 250 MVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAAENFINYGDLFKKIMETAP 329 (466)
Q Consensus 250 miaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE~~~~~~~~~~~~~~~~~ 329 (466)
.+. + .+ -.....++++.+.+.|+|+.+-.+ -.++.+-....|....+...+ ..
T Consensus 122 k~~-~----~~----~~~~l~~~~~~a~~~g~~V~~HaE------------d~~~~~~~~~~~g~~~~~~~~------~~ 174 (386)
T PRK08417 122 ELS-S----DL----DANLLKVIAQYAKMLDVPIFCRCE------------DSSFDDSGVMNDGELSFELGL------PG 174 (386)
T ss_pred ECC-C----CC----CHHHHHHHHHHHHHcCCEEEEeCC------------CHHHhhHHHHhcChhhHHhCC------CC
Confidence 331 1 11 133556677888899999887443 223322111111111110000 01
Q ss_pred CCCCcHHH-HHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcC-CCCCEEEEEec
Q 012335 330 VPMSPLES-LASSAVRTANCIKAALILVLTRGGTTAKMVSKYR-PSMPILSVIVP 382 (466)
Q Consensus 330 ~~~~~~~~-ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~R-P~~PIiAv~~~ 382 (466)
.|. ..|. ....++++|+..+++.-++...|+.+...+.+.| ...+|-+=|+|
T Consensus 175 rp~-~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~~ak~~g~~vt~ev~p 228 (386)
T PRK08417 175 IPS-IAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGEKLLKEVSI 228 (386)
T ss_pred CCH-HHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEech
Confidence 121 1233 3356678899999999999999999998886555 34688777666
No 81
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=70.74 E-value=25 Score=35.15 Aligned_cols=94 Identities=11% Similarity=0.137 Sum_probs=57.6
Q ss_pred hccCcCCCcEEEEc------CCCChhh-HHHHHHHHHhcCCCceEEEeecC---HHHHhcHHHHHhc-CCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALS------FVRKGSD-LVEVRNLLRVHAKNILLMSKVEN---LEGVANFDDVLAN-SDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~s------fV~sa~d-v~~~r~~l~~~~~~~~IiaKIE~---~~av~nideI~~~-sDgImiaRgDLg 257 (466)
++.++.|+|+|++. +--|.++ .+-++...+..+.++.|++-+-. .++++....-.+. +|++|+.+-...
T Consensus 26 ~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~ 105 (285)
T TIGR00674 26 DFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYN 105 (285)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCC
Confidence 78889999999874 2333333 33334445555567889998843 3344444433333 699999865543
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 258 MEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 258 ~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
..+.+.+...-+.|.++ .+.|+++-
T Consensus 106 -~~~~~~i~~~~~~i~~~---~~~pi~lY 130 (285)
T TIGR00674 106 -KPTQEGLYQHFKAIAEE---VDLPIILY 130 (285)
T ss_pred -CCCHHHHHHHHHHHHhc---CCCCEEEE
Confidence 23345666666666554 47998864
No 82
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=70.20 E-value=27 Score=35.33 Aligned_cols=94 Identities=12% Similarity=0.097 Sum_probs=56.6
Q ss_pred hccCcCCCcEEEEcC------CCChh-hHHHHHHHHHhcCCCceEEEeecC--HHHHhcHHHHHhc-CCeeEEeCCcccC
Q 012335 189 NWGVPNKIDMIALSF------VRKGS-DLVEVRNLLRVHAKNILLMSKVEN--LEGVANFDDVLAN-SDAFMVARGDLGM 258 (466)
Q Consensus 189 ~~~~~~~~d~v~~sf------V~sa~-dv~~~r~~l~~~~~~~~IiaKIE~--~~av~nideI~~~-sDgImiaRgDLg~ 258 (466)
+|.++.|+|+|++.= .-|.+ -.+-++......+.++.+|+-+-. .++++......+. +|++|+.+-.+.
T Consensus 35 ~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~y~- 113 (303)
T PRK03620 35 EWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPYLT- 113 (303)
T ss_pred HHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCC-
Confidence 788899999998732 23333 344444455555677899988832 2333333333332 699999876653
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 259 EIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 259 e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
....+.+....+.+.+ +.+.|+++-
T Consensus 114 ~~~~~~i~~~f~~va~---~~~lpi~lY 138 (303)
T PRK03620 114 EAPQEGLAAHVEAVCK---STDLGVIVY 138 (303)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCEEEE
Confidence 2234555555555544 568998875
No 83
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=69.63 E-value=8.3 Score=41.47 Aligned_cols=48 Identities=25% Similarity=0.444 Sum_probs=38.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 12 KIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 12 kIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
.+=+.+|..-.+.+..+.|+++|++++-++.+||..+...+.|+.+|+
T Consensus 214 ~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 214 IVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 345577777677889999999999999999999988776666666664
No 84
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=69.11 E-value=32 Score=34.13 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=59.1
Q ss_pred HHHHhccCcCCCcEEEEcC------CCChhhHHHH-HHHHHhcCCCceEEEeecC---HHHHhcHHHHHhc-CCeeEEeC
Q 012335 185 EDILNWGVPNKIDMIALSF------VRKGSDLVEV-RNLLRVHAKNILLMSKVEN---LEGVANFDDVLAN-SDAFMVAR 253 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~sf------V~sa~dv~~~-r~~l~~~~~~~~IiaKIE~---~~av~nideI~~~-sDgImiaR 253 (466)
+.+ +|.++.|+|+|++.- --|.++=.++ +...+..+.+++|++-+=. .++++.....-+. +|++|+.+
T Consensus 22 ~~i-~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 22 RLV-EFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHH-HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 344 788899999997642 2233333333 3444444567899998843 2333333333333 69999987
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 254 GDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 254 gDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
-.+.. .+.+.+...-+.|+++ .+.|+++-
T Consensus 101 P~y~~-~~~~~~~~~~~~ia~~---~~~pi~iY 129 (281)
T cd00408 101 PYYNK-PSQEGIVAHFKAVADA---SDLPVILY 129 (281)
T ss_pred CcCCC-CCHHHHHHHHHHHHhc---CCCCEEEE
Confidence 66544 4456666666666654 68999863
No 85
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=67.99 E-value=27 Score=33.13 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHH-HhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEG-VANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~a-v~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
++.+++.|.+.+.++.|.+.-|+... .++.+++++..|.|+.+..+ +.....+-+.|+++++|++.+.
T Consensus 77 a~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 77 AAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 45667778888888888887666532 46778888889988876332 3456678899999999998864
No 86
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=67.88 E-value=27 Score=39.49 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=69.9
Q ss_pred hhcHHHHHhccCcCCCcEEEEc--CCCChhhHHHHHHHHHhcCCCceEEEeecC--HHHHhcHHHHHhcCCeeEEeCCcc
Q 012335 181 EKDKEDILNWGVPNKIDMIALS--FVRKGSDLVEVRNLLRVHAKNILLMSKVEN--LEGVANFDDVLANSDAFMVARGDL 256 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~s--fV~sa~dv~~~r~~l~~~~~~~~IiaKIE~--~~av~nideI~~~sDgImiaRgDL 256 (466)
+.-.+.+ ....+.|+|+|-+. -.+.|+.+..+++.|.+.|.+++++|-|-- .-|+ +-++.+|.|=|.+|.+
T Consensus 110 eatv~Qi-~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al----~a~~~vdkiRINPGN~ 184 (733)
T PLN02925 110 EATVDQV-MRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVAL----RVAECFDKIRVNPGNF 184 (733)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHH----HHHHhcCCeEECCccc
Confidence 3344455 44567999987554 445555566666667777889999999943 2233 3344489999999999
Q ss_pred cCcC---------------CchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 257 GMEI---------------PIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 257 g~e~---------------~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
+-.- .++++..--..++.+|+++|+|+=+-+
T Consensus 185 ~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGv 230 (733)
T PLN02925 185 ADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGT 230 (733)
T ss_pred CCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEec
Confidence 8762 123444444579999999999987766
No 87
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=67.65 E-value=18 Score=38.76 Aligned_cols=52 Identities=17% Similarity=0.333 Sum_probs=31.4
Q ss_pred CCeeEEeCCcccCcCCchhHHHH-HHHHHHHHHHcCCCeEEee------hhhHhhhcCCCCCH
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLA-QKVMIHKANIQGKPVVTAT------QMLESMIKSPRPTR 301 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~-qk~ii~~~~~~gkPvi~AT------qmLeSM~~~p~PTR 301 (466)
.|.|+|+||-=+. |++..+ ...++++..+...|||.|- -+.+-.-.--.||.
T Consensus 188 ~dviii~RGGGs~----eDL~~Fn~e~~~rai~~~~~Pvis~iGHe~D~ti~D~vAd~ra~TP 246 (432)
T TIGR00237 188 CDVLIVGRGGGSL----EDLWSFNDEKVARAIFLSKIPIISAVGHETDFTISDFVADLRAPTP 246 (432)
T ss_pred CCEEEEecCCCCH----HHhhhcCcHHHHHHHHcCCCCEEEecCcCCCccHHHHhhhccCCCc
Confidence 5999999995432 233322 3455666677899999873 35554444334443
No 88
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=67.40 E-value=23 Score=35.00 Aligned_cols=80 Identities=23% Similarity=0.273 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 208 SDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 208 ~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
++..++.+++++. ++..++-.=+.++++-++++ -.+.+=||-+||.. + .+++.|.+.|||+|++|
T Consensus 56 e~~~~L~~~~~~~--gi~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~n------~-----~lL~~~A~tgkPvIlST 120 (241)
T PF03102_consen 56 EQHKELFEYCKEL--GIDFFSTPFDEESVDFLEEL--GVPAYKIASGDLTN------L-----PLLEYIAKTGKPVILST 120 (241)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-------H-----HHHHHHHTT-S-EEEE-
T ss_pred HHHHHHHHHHHHc--CCEEEECCCCHHHHHHHHHc--CCCEEEeccccccC------H-----HHHHHHHHhCCcEEEEC
Confidence 3344444444332 23334433333444333332 26788899999862 2 35677888999999999
Q ss_pred hhhHhhhcCCCCCHHHHHhHHHhh
Q 012335 288 QMLESMIKSPRPTRAEATDVANAA 311 (466)
Q Consensus 288 qmLeSM~~~p~PTRAEvsDv~naa 311 (466)
-|= |-+|+.+..+..
T Consensus 121 G~s---------tl~EI~~Av~~~ 135 (241)
T PF03102_consen 121 GMS---------TLEEIERAVEVL 135 (241)
T ss_dssp TT-----------HHHHHHHHHHH
T ss_pred CCC---------CHHHHHHHHHHH
Confidence 754 566666655553
No 89
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=67.29 E-value=33 Score=34.12 Aligned_cols=95 Identities=12% Similarity=0.137 Sum_probs=59.1
Q ss_pred hccCcCCCcEEEEcC------CCChhhHHHH-HHHHHhcCCCceEEEeecC---HHHHhcHHHHHhc-CCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALSF------VRKGSDLVEV-RNLLRVHAKNILLMSKVEN---LEGVANFDDVLAN-SDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~sf------V~sa~dv~~~-r~~l~~~~~~~~IiaKIE~---~~av~nideI~~~-sDgImiaRgDLg 257 (466)
+|.++.|+++|++.- --|.++=.++ +...+..+.++.|++-+-. .++++......+. +|+||+.+-...
T Consensus 28 ~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~ 107 (284)
T cd00950 28 EFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYN 107 (284)
T ss_pred HHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccC
Confidence 788899999998662 1233333333 3333444457889998854 3455555554444 699999876542
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 258 MEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 258 ~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
..+-+.+...-+.|++. .+.|+++-.
T Consensus 108 -~~~~~~l~~~~~~ia~~---~~~pi~lYn 133 (284)
T cd00950 108 -KPSQEGLYAHFKAIAEA---TDLPVILYN 133 (284)
T ss_pred -CCCHHHHHHHHHHHHhc---CCCCEEEEE
Confidence 22345666666666664 589998753
No 90
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=66.99 E-value=12 Score=38.85 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=41.3
Q ss_pred EEEEecCCCCCCHHHHHHHHHh--CCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 12 KIVCTLGPASRSVEMAEKLLRA--GMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 12 kIi~TiGp~~~~~~~l~~li~~--G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
.+..++|-..++.+.+++|+++ |+|+.=|+.|||..+...++|+.||+
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~ 147 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKARE 147 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 4555888888899999999995 99999999999999987777777775
No 91
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=66.60 E-value=27 Score=36.47 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=63.4
Q ss_pred hhcHHHHHhccCcCCCcEEEE--cCCCChhhHHHHHHHHHhcCCCceEE-EeecCHHHHhcHHHHHhcCCeeEEeCCccc
Q 012335 181 EKDKEDILNWGVPNKIDMIAL--SFVRKGSDLVEVRNLLRVHAKNILLM-SKVENLEGVANFDDVLANSDAFMVARGDLG 257 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~--sfV~sa~dv~~~r~~l~~~~~~~~Ii-aKIE~~~av~nideI~~~sDgImiaRgDLg 257 (466)
+.|.+.+ +..++.|+|++.+ +...+...+..++++ ++...++.|| --+-|.++.++|-+ .=+|+|-||=|-=+
T Consensus 107 ~~~~er~-~~L~~agvD~ivID~a~g~s~~~~~~ik~i-k~~~~~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGs 182 (352)
T PF00478_consen 107 DDDFERA-EALVEAGVDVIVIDSAHGHSEHVIDMIKKI-KKKFPDVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGS 182 (352)
T ss_dssp TCHHHHH-HHHHHTT-SEEEEE-SSTTSHHHHHHHHHH-HHHSTTSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSST
T ss_pred HHHHHHH-HHHHHcCCCEEEccccCccHHHHHHHHHHH-HHhCCCceEEecccCCHHHHHHHHH--cCCCEEEEeccCCc
Confidence 3455555 4557799999988 677777777777654 4444455554 57999999877543 23899999855322
Q ss_pred CcC-------CchhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 258 MEI-------PIEKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 258 ~e~-------~~e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
+-. +.+. ..+--+..+.|+++++|+|--..+=
T Consensus 183 iCtTr~v~GvG~PQ-~tAv~~~a~~a~~~~v~iIADGGi~ 221 (352)
T PF00478_consen 183 ICTTREVTGVGVPQ-LTAVYECAEAARDYGVPIIADGGIR 221 (352)
T ss_dssp TBHHHHHHSBSCTH-HHHHHHHHHHHHCTTSEEEEESS-S
T ss_pred ccccccccccCCcH-HHHHHHHHHHhhhccCceeecCCcC
Confidence 221 1222 2333456677777889988665544
No 92
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=66.40 E-value=35 Score=32.38 Aligned_cols=66 Identities=6% Similarity=0.022 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
++.+++.|.+.+.++.|-+.-+... ++.++..+-.|.|+.+..+ +..+..+-+.|++.|+|.+.+.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4566777888888877766555443 4567778888988887443 3466778899999999988764
No 93
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=66.07 E-value=48 Score=31.47 Aligned_cols=100 Identities=13% Similarity=0.206 Sum_probs=57.8
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHh-------cHHHHHhc-CCe
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVA-------NFDDVLAN-SDA 248 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~-------nideI~~~-sDg 248 (466)
|..|+.|.+.+.+.+.+.++|.|+++ +..+..+++.+.. ..+.+-+=+=.+.|-. ..++-++. +|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 67799998888677888999999988 6777777777753 3355554454444322 24444443 676
Q ss_pred eEEeCCcccCcC--CchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 249 FMVARGDLGMEI--PIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 249 ImiaRgDLg~e~--~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
|-+- -+.|.-. ..+++..--+++.+.|. |+|+.+
T Consensus 86 vdvv-~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv 121 (203)
T cd00959 86 IDMV-INIGALKSGDYEAVYEEIAAVVEACG--GAPLKV 121 (203)
T ss_pred EEEe-ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE
Confidence 5543 1111100 11233334445555554 788755
No 94
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=65.81 E-value=10 Score=39.10 Aligned_cols=44 Identities=11% Similarity=0.366 Sum_probs=36.4
Q ss_pred ecCCCCCCHHHHHHHHHhCC--ceEEEecCCCCHHHHHHHHHHHHH
Q 012335 16 TLGPASRSVEMAEKLLRAGM--NVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 16 TiGp~~~~~~~l~~li~~G~--~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
.+|.+..+.+.+.+|+++|+ |+.=|+.+||..+..+++|+.||+
T Consensus 91 ~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 91 SVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 44555566789999999966 999999999998888888888875
No 95
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=65.76 E-value=10 Score=40.35 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=40.8
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 10 KTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 10 ~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
+-..-|.+|+.-.+.+.++.|+++|+++.=|..+||..+...++++.+|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 34567778887667789999999999999999999987776677777765
No 96
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=65.59 E-value=19 Score=35.35 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=43.6
Q ss_pred HHHhccCcCCCcEEEEcCCCCh---hhHHHHHHHHHhcCCCceEEEe--ecCHHHHhcHHHHHhc-CCeeEEeCCcccCc
Q 012335 186 DILNWGVPNKIDMIALSFVRKG---SDLVEVRNLLRVHAKNILLMSK--VENLEGVANFDDVLAN-SDAFMVARGDLGME 259 (466)
Q Consensus 186 di~~~~~~~~~d~v~~sfV~sa---~dv~~~r~~l~~~~~~~~IiaK--IE~~~av~nideI~~~-sDgImiaRgDLg~e 259 (466)
++.+.+.+.|+|+|.+.--.+. .+.+.++++-... ..++||+- |.+. +...+.+.+ +|+||||||=|.-.
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s~---eda~e~l~~GAd~VmvgR~~l~~~ 227 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDDI---ESAKEMLKAGADFVSVARAILKGN 227 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCCH---HHHHHHHHhCCCeEEEcHhhccCC
Confidence 4435567899999988532222 3566666654332 23777773 3332 333444444 89999999987655
Q ss_pred CC
Q 012335 260 IP 261 (466)
Q Consensus 260 ~~ 261 (466)
+.
T Consensus 228 ~~ 229 (231)
T TIGR00736 228 VE 229 (231)
T ss_pred cC
Confidence 44
No 97
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=65.57 E-value=38 Score=32.61 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=62.2
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEee-----------cCHHHHhcHHHHHhc
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKV-----------ENLEGVANFDDVLAN 245 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKI-----------E~~~av~nideI~~~ 245 (466)
|..+..|.+.+.+.+.+.|+|.|+++ +-.+...+..+. + +..++.++ .+..-+..+++.++.
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~--~-~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA--G-DIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC--C-CCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 45577788777678889999999998 334444343331 1 22333332 112223346666665
Q ss_pred -CCee--EEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 246 -SDAF--MVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 246 -sDgI--miaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
+|++ ++--|++. ..++...-+++.+.|+++|.|+|+
T Consensus 89 Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~ii 127 (235)
T cd00958 89 GADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIA 127 (235)
T ss_pred CCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEE
Confidence 6877 55555442 456667778999999999999987
No 98
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=65.47 E-value=29 Score=32.95 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-++.+.+.+.+.+.++.+-+.-++... +|++++++-+|.|+.+-.. +..+..+-+.|+++++|+|.+.
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 355566667777766666554443332 5788888889988877432 2467789999999999998864
No 99
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=65.28 E-value=35 Score=34.58 Aligned_cols=64 Identities=9% Similarity=0.163 Sum_probs=42.6
Q ss_pred hccCcCCCcEEEE------------------cCCCChhhHHHHHHHHHh-cCCCceEEEeecCH-------HHHhcHHHH
Q 012335 189 NWGVPNKIDMIAL------------------SFVRKGSDLVEVRNLLRV-HAKNILLMSKVENL-------EGVANFDDV 242 (466)
Q Consensus 189 ~~~~~~~~d~v~~------------------sfV~sa~dv~~~r~~l~~-~~~~~~IiaKIE~~-------~av~nideI 242 (466)
+...+.|+.+|.+ ..+...+-+..++..... .+.++.|+|..|.. ++++....-
T Consensus 99 ~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay 178 (285)
T TIGR02320 99 RKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAY 178 (285)
T ss_pred HHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHH
Confidence 4446788988888 223334445555555554 35689999997764 566666666
Q ss_pred Hhc-CCeeEEe
Q 012335 243 LAN-SDAFMVA 252 (466)
Q Consensus 243 ~~~-sDgImia 252 (466)
.++ +|+|||-
T Consensus 179 ~eAGAD~ifv~ 189 (285)
T TIGR02320 179 AEAGADGIMIH 189 (285)
T ss_pred HHcCCCEEEec
Confidence 666 8999994
No 100
>PRK15452 putative protease; Provisional
Probab=64.86 E-value=62 Score=34.88 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=37.5
Q ss_pred CHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 012335 23 SVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNN 63 (466)
Q Consensus 23 ~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~ 63 (466)
-.+.|.+|+++|++.|||.+-.-++++..+++...|++.+.
T Consensus 270 ~i~~l~~L~~aGV~s~KIEgR~ks~~yv~~vv~~YR~ald~ 310 (443)
T PRK15452 270 AIQHVERLTKMGVHSLKIEGRTKSFYYVARTAQVYRKAIDD 310 (443)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999999999999998764
No 101
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=64.25 E-value=4.8 Score=28.70 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=19.3
Q ss_pred CceEEEecC-CCCHHHHHHHHHHHH
Q 012335 35 MNVARFNFS-HGSHAYHQETLDNLR 58 (466)
Q Consensus 35 ~~v~RiN~s-hg~~~~~~~~i~~ir 58 (466)
+.|.+++|| |++.++..++++.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcC
Confidence 678999998 999999888887763
No 102
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=64.09 E-value=14 Score=35.60 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=37.0
Q ss_pred CHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 012335 23 SVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNN 63 (466)
Q Consensus 23 ~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~ 63 (466)
-.+.|.+|.++|++.|||.+-.-+.++..++++..|++-+.
T Consensus 158 l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 158 LLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred HHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999998663
No 103
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=64.01 E-value=9.4 Score=41.63 Aligned_cols=45 Identities=22% Similarity=0.469 Sum_probs=37.1
Q ss_pred EecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 15 CTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 15 ~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
+.+|..-.+.+.++.|+++|+++.=++.+||......+.|+.+|+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 467776667899999999999999999999987776666666665
No 104
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=63.74 E-value=15 Score=38.00 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=41.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Q 012335 12 KIVCTLGPASRSVEMAEKLLRAG--MNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 12 kIi~TiGp~~~~~~~l~~li~~G--~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
.+..++|-...+.+.+++|+++| +|+.=|+.|||..+...+.|+.||+
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 45558899889999999999996 9999999999999987778877775
No 105
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=63.52 E-value=49 Score=32.85 Aligned_cols=100 Identities=12% Similarity=0.124 Sum_probs=62.8
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHH----------hcHHHHHhc-
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGV----------ANFDDVLAN- 245 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av----------~nideI~~~- 245 (466)
|..+..|.+.+.+.+.+.|+|.|+++. --+...+..+ +.++.++.+|++..++ ...++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 444667777666788999999999983 3343333333 2357788988843333 224555554
Q ss_pred CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
+|++.+- -.++ ....+++...-+++.+.|+++|.|+++
T Consensus 107 ad~v~~~-~~~g-~~~~~~~~~~~~~v~~~~~~~g~pl~v 144 (267)
T PRK07226 107 ADAVSVH-VNVG-SETEAEMLEDLGEVAEECEEWGMPLLA 144 (267)
T ss_pred CCEEEEE-EecC-ChhHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 5655442 1111 111345666668899999999999987
No 106
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=63.22 E-value=26 Score=35.11 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 207 GSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 207 a~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
.+.++.+++++.+. .+.+++-+-++..++-+.+ ..|.+-||-+++- +..++..+.+.||||++.
T Consensus 77 ~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~~---~vd~~kIga~~~~-----------n~~LL~~~a~~gkPV~lk 140 (266)
T PRK13398 77 EEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVAD---YADMLQIGSRNMQ-----------NFELLKEVGKTKKPILLK 140 (266)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHHH---hCCEEEECccccc-----------CHHHHHHHhcCCCcEEEe
Confidence 45677788888664 5889998888877766655 4799999977764 245677778899999999
Q ss_pred ehhhHhhhcCCCCCHHHHHhHHHhhhh
Q 012335 287 TQMLESMIKSPRPTRAEATDVANAAEN 313 (466)
Q Consensus 287 TqmLeSM~~~p~PTRAEvsDv~naaE~ 313 (466)
|.|.-+ +.|+-+|+|.
T Consensus 141 ~G~~~s-----------~~e~~~A~e~ 156 (266)
T PRK13398 141 RGMSAT-----------LEEWLYAAEY 156 (266)
T ss_pred CCCCCC-----------HHHHHHHHHH
Confidence 876644 3466666554
No 107
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=62.15 E-value=91 Score=30.19 Aligned_cols=125 Identities=21% Similarity=0.126 Sum_probs=75.6
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcCCCCh------hhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeE
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSFVRKG------SDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFM 250 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sfV~sa------~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgIm 250 (466)
.++..++..+.+...+.|+|+|-+.|-.+. +|..++-+.+.+.+.+.++.+-.=+ +.+.++...+. .|.|.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEVR 92 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEEE
Confidence 356666666546667899999999998887 6766665666666655666665544 23344445544 36666
Q ss_pred EeCCcccCc--------CCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 251 VARGDLGME--------IPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 251 iaRgDLg~e--------~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
+. +-+.+ .+.+....--...++.++++|.++.+.+... ..+.=+..++.+++..
T Consensus 93 i~--~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~----~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 93 IF--DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDA----FGCKTDPEYVLEVAKA 154 (265)
T ss_pred EE--EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEee----cCCCCCHHHHHHHHHH
Confidence 54 11111 2333455556788889999999988866322 1112455555555554
No 108
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=62.15 E-value=20 Score=29.76 Aligned_cols=43 Identities=30% Similarity=0.470 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHHhcCCCCCEEEE
Q 012335 336 ESLASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 379 (466)
Q Consensus 336 ~~ia~~av~~a~~~~a~~Ivv~T~s---------G~ta~~vSk~RP~~PIiAv 379 (466)
...+....+.+.+.++++||+-++. |+++..+.+.-| ||++.+
T Consensus 88 ~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 88 GDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred eccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 3466777788999999999998877 678888888776 999987
No 109
>PRK07695 transcriptional regulator TenI; Provisional
Probab=61.71 E-value=24 Score=33.24 Aligned_cols=34 Identities=9% Similarity=0.038 Sum_probs=28.1
Q ss_pred HHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 26 MAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 26 ~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
.+.+++++|++.+-|.--+.+.++..+.++.+++
T Consensus 19 ~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 19 AVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3445899999999999999999988887777773
No 110
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=61.70 E-value=44 Score=33.42 Aligned_cols=94 Identities=10% Similarity=0.108 Sum_probs=58.0
Q ss_pred hccCcCCCcEEEEcC-------CCChhhHHHHHHHHHhcCCCceEEEeec---CHHHHhcHHHHHhc-CCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALSF-------VRKGSDLVEVRNLLRVHAKNILLMSKVE---NLEGVANFDDVLAN-SDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~sf-------V~sa~dv~~~r~~l~~~~~~~~IiaKIE---~~~av~nideI~~~-sDgImiaRgDLg 257 (466)
+|.++.|+++|++.- ....|-.+-++...+..+.++.|++-+= +.++++.....-++ +|++|+.+-.+.
T Consensus 29 ~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~ 108 (292)
T PRK03170 29 DYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYN 108 (292)
T ss_pred HHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCC
Confidence 788899999998642 2223333333444444456788999884 34455544444443 699999776653
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 258 MEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 258 ~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
..+.+.+...-++|+++ .+.|+++-
T Consensus 109 -~~~~~~i~~~~~~ia~~---~~~pv~lY 133 (292)
T PRK03170 109 -KPTQEGLYQHFKAIAEA---TDLPIILY 133 (292)
T ss_pred -CCCHHHHHHHHHHHHhc---CCCCEEEE
Confidence 23445666666666554 47999875
No 111
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=61.07 E-value=54 Score=32.93 Aligned_cols=98 Identities=10% Similarity=0.076 Sum_probs=59.5
Q ss_pred HHHHhccCc-CCCcEEEEcC------CCChhhHHH-HHHHHHhcCCCceEEEeec---CHHHHhcHHHHHhc-CCeeEEe
Q 012335 185 EDILNWGVP-NKIDMIALSF------VRKGSDLVE-VRNLLRVHAKNILLMSKVE---NLEGVANFDDVLAN-SDAFMVA 252 (466)
Q Consensus 185 ~di~~~~~~-~~~d~v~~sf------V~sa~dv~~-~r~~l~~~~~~~~IiaKIE---~~~av~nideI~~~-sDgImia 252 (466)
+.+.++.++ .|+++|++.= .=|.++-.+ ++..++..+.++.||+-+- +.++++.....-+. +|++|+.
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~ 106 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAV 106 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 333378888 9999987642 223333333 3444555566789999994 45555555555444 7999998
Q ss_pred CCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 253 RGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 253 RgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
+..+-- ...+.+...-+.+ |.+.+.|+++-
T Consensus 107 ~P~y~~-~~~~~l~~~f~~v---a~a~~lPv~iY 136 (293)
T PRK04147 107 TPFYYP-FSFEEICDYYREI---IDSADNPMIVY 136 (293)
T ss_pred CCcCCC-CCHHHHHHHHHHH---HHhCCCCEEEE
Confidence 765422 2234444444444 44567899875
No 112
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=60.58 E-value=15 Score=40.14 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=40.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 11 TKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 11 tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
-..=|.+|+.-+..|-.++|+++|+|+.=++.+||......++++.||+
T Consensus 237 l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 237 LLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred EEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 3445578887788899999999999999999999987776667777775
No 113
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=60.34 E-value=45 Score=30.92 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHc-CCCeEEee
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQ-GKPVVTAT 287 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~-gkPvi~AT 287 (466)
.+.+++.|.+.+..+.+.+--+.... +|++++++-.|-|+.+-.++ .....+...|.+. ++|.|.+.
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~~----------~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDNA----------ETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCCH----------HHHHHHHHHHHHHCCCCEEEEe
Confidence 66677788888877777665544444 67888888888888763332 4556677887776 99999874
No 114
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=60.23 E-value=26 Score=36.26 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=51.5
Q ss_pred CChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEEeCCccc
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMVARGDLG 257 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImiaRgDLg 257 (466)
|++++.+.|.+++.+.|++++.-+| |...+ |.+.+. .|.+=||-+|+.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpf-----d~~sv--------------------------d~l~~~~v~~~KIaS~~~~ 121 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPF-----DLESA--------------------------DFLEDLGVPRFKIPSGEIT 121 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeC-----CHHHH--------------------------HHHHhcCCCEEEECccccc
Confidence 5666666666666667777666665 33222 222233 688888888885
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 258 MEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 258 ~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
- -.+++.+.+.|||+|+.|.|- |-+|+...+..
T Consensus 122 n-----------~pLL~~~A~~gkPvilStGma---------tl~Ei~~Av~~ 154 (329)
T TIGR03569 122 N-----------APLLKKIARFGKPVILSTGMA---------TLEEIEAAVGV 154 (329)
T ss_pred C-----------HHHHHHHHhcCCcEEEECCCC---------CHHHHHHHHHH
Confidence 3 235667778899999999862 45555555544
No 115
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=60.04 E-value=60 Score=31.05 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=50.4
Q ss_pred HHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEEeCCcccCcCCch
Q 012335 185 EDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMVARGDLGMEIPIE 263 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImiaRgDLg~e~~~e 263 (466)
+.+ +.+.+.|+|+|.++.-.+.+.++.+++ .++.++.++.+.+- +..+.+. +|+|.+....-+-.....
T Consensus 71 ~~~-~~~~~~g~d~v~l~~~~~~~~~~~~~~------~~i~~i~~v~~~~~---~~~~~~~gad~i~~~~~~~~G~~~~~ 140 (236)
T cd04730 71 ALL-EVALEEGVPVVSFSFGPPAEVVERLKA------AGIKVIPTVTSVEE---ARKAEAAGADALVAQGAEAGGHRGTF 140 (236)
T ss_pred HHH-HHHHhCCCCEEEEcCCCCHHHHHHHHH------cCCEEEEeCCCHHH---HHHHHHcCCCEEEEeCcCCCCCCCcc
Confidence 344 566789999999997755444433332 25788888876533 3444433 688876322111111110
Q ss_pred hHHHHHHHHHHHHHH-cCCCeEEeeh
Q 012335 264 KIFLAQKVMIHKANI-QGKPVVTATQ 288 (466)
Q Consensus 264 ~v~~~qk~ii~~~~~-~gkPvi~ATq 288 (466)
. ......+..+++ .++|++.+--
T Consensus 141 ~--~~~~~~i~~i~~~~~~Pvi~~GG 164 (236)
T cd04730 141 D--IGTFALVPEVRDAVDIPVIAAGG 164 (236)
T ss_pred c--cCHHHHHHHHHHHhCCCEEEECC
Confidence 0 012334444443 3789998764
No 116
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=60.01 E-value=1.1e+02 Score=30.16 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=28.2
Q ss_pred hccCcCCCcEEEEcCCC----------ChhhHHHHHHHHHhcCCCc
Q 012335 189 NWGVPNKIDMIALSFVR----------KGSDLVEVRNLLRVHAKNI 224 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~----------sa~dv~~~r~~l~~~~~~~ 224 (466)
+.+.+.|+|+|-++.-. +.+++.++++.+.+.|-.+
T Consensus 28 ~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i 73 (283)
T PRK13209 28 AIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRV 73 (283)
T ss_pred HHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCce
Confidence 66789999999987532 6778999999998876443
No 117
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=59.87 E-value=25 Score=31.98 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=34.5
Q ss_pred eeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 248 AFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 248 gImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
.+++|-.|++...+.+++..-.+.++..+++.|.++++.|
T Consensus 64 ~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 64 IIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred EEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4667788998878899999999999999999999988765
No 118
>PLN02417 dihydrodipicolinate synthase
Probab=59.80 E-value=50 Score=33.02 Aligned_cols=92 Identities=11% Similarity=0.144 Sum_probs=57.8
Q ss_pred hccCcCCCcEEEEcC------CCChhhHHH-HHHHHHhcCCCceEEEeec---CHHHHhcHHHHHhc-CCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALSF------VRKGSDLVE-VRNLLRVHAKNILLMSKVE---NLEGVANFDDVLAN-SDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~sf------V~sa~dv~~-~r~~l~~~~~~~~IiaKIE---~~~av~nideI~~~-sDgImiaRgDLg 257 (466)
+|.++.|+|+|++.= .-|.++=.+ ++...+..+.+++|++-+= +.++++....--+. +|++|+.+-.+.
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~ 108 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 108 (280)
T ss_pred HHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccC
Confidence 788899999998742 223333333 3344455456789999884 44555555544444 699999887664
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 258 MEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 258 ~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
..+.+.+...-+.+.+. . |+++-
T Consensus 109 -~~~~~~i~~~f~~va~~----~-pi~lY 131 (280)
T PLN02417 109 -KTSQEGLIKHFETVLDM----G-PTIIY 131 (280)
T ss_pred -CCCHHHHHHHHHHHHhh----C-CEEEE
Confidence 23456666666666653 3 98764
No 119
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=59.21 E-value=41 Score=28.60 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=52.3
Q ss_pred CCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCe
Q 012335 204 VRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPV 283 (466)
Q Consensus 204 V~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPv 283 (466)
..|.--+..+++++.+.|-+..|.|. ++..+++.+.-.|.|+++ +.+....+++-+.|...|+||
T Consensus 11 aSSs~la~km~~~a~~~gi~~~i~a~-----~~~e~~~~~~~~Dvill~----------PQv~~~~~~i~~~~~~~~ipv 75 (99)
T cd05565 11 GTSGLLANALNKGAKERGVPLEAAAG-----AYGSHYDMIPDYDLVILA----------PQMASYYDELKKDTDRLGIKL 75 (99)
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEEEe-----eHHHHHHhccCCCEEEEc----------ChHHHHHHHHHHHhhhcCCCE
Confidence 44555678889999998877666653 444577777778988887 467788899999999999999
Q ss_pred EEe
Q 012335 284 VTA 286 (466)
Q Consensus 284 i~A 286 (466)
.+-
T Consensus 76 ~~I 78 (99)
T cd05565 76 VTT 78 (99)
T ss_pred EEe
Confidence 763
No 120
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.20 E-value=56 Score=32.03 Aligned_cols=119 Identities=8% Similarity=0.040 Sum_probs=67.0
Q ss_pred HHHhccCcCCCcEEEEcCCC----------ChhhHHHHHHHHHhcCCCceEEE-------ee---c---CHHHHhcHHHH
Q 012335 186 DILNWGVPNKIDMIALSFVR----------KGSDLVEVRNLLRVHAKNILLMS-------KV---E---NLEGVANFDDV 242 (466)
Q Consensus 186 di~~~~~~~~~d~v~~sfV~----------sa~dv~~~r~~l~~~~~~~~Iia-------KI---E---~~~av~nideI 242 (466)
.+ +++.++|+|+|=+++.. +.+++.++++.+.+.|-.+.-+. -+ + ..++++.+...
T Consensus 21 ~~-~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 99 (284)
T PRK13210 21 RL-VFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKA 99 (284)
T ss_pred HH-HHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHH
Confidence 44 67789999999887643 45678999999998874433221 01 1 12356666666
Q ss_pred HhcC-----CeeEEeCCcccCcC----CchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 243 LANS-----DAFMVARGDLGMEI----PIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 243 ~~~s-----DgImiaRgDLg~e~----~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
++.+ +.|.+.-++...+- ..+.+...-+++...+.++|..+. +|-|-.+-.+|.++..++..+
T Consensus 100 i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~-----lE~~~~~~~~~~~~~~~l~~~ 171 (284)
T PRK13210 100 IRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA-----VEIMDTPFMNSISKWKKWDKE 171 (284)
T ss_pred HHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE-----EEecCccccCCHHHHHHHHHH
Confidence 6552 55655433221111 123344444566667777776544 333333335566666665554
No 121
>PRK15005 universal stress protein F; Provisional
Probab=58.76 E-value=23 Score=30.70 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCcEEEEEcCC--------chHHHHHHhcCCCCCEEEE
Q 012335 339 ASSAVRTANCIKAALILVLTRG--------GTTAKMVSKYRPSMPILSV 379 (466)
Q Consensus 339 a~~av~~a~~~~a~~Ivv~T~s--------G~ta~~vSk~RP~~PIiAv 379 (466)
+...++.|.+.++++||+-|+. |+++..+.+.-| |||+.+
T Consensus 96 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~-cpVlvV 143 (144)
T PRK15005 96 KDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAE-CSVLVV 143 (144)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCC-CCEEEe
Confidence 3445567889999999998764 567777777665 999987
No 122
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=58.66 E-value=20 Score=36.98 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=40.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Q 012335 12 KIVCTLGPASRSVEMAEKLLRAG--MNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 12 kIi~TiGp~~~~~~~l~~li~~G--~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
-..+++|-..++.+.+..|+++| .++.=+..|||..+...+.++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 46777888888889999999999 6999999999998886666666664
No 123
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=58.49 E-value=79 Score=33.07 Aligned_cols=93 Identities=13% Similarity=0.167 Sum_probs=66.6
Q ss_pred HHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCch
Q 012335 184 KEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIE 263 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e 263 (466)
.+.| ....+.|+|.|-++ |.+.++...++++-... +++++|-|-- +.--.+..+-.-+|+|=|.+|.+|
T Consensus 45 v~Qi-~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHF-d~~lAl~a~~~G~~~iRINPGNig------ 113 (360)
T PRK00366 45 VAQI-KRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHF-DYRLALAAAEAGADALRINPGNIG------ 113 (360)
T ss_pred HHHH-HHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCC-CHHHHHHHHHhCCCEEEECCCCCC------
Confidence 3444 34467999998887 57788888887776553 6999999932 222233444445899999999995
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEee
Q 012335 264 KIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 264 ~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
....--+.++++|+++|+|+=+-.
T Consensus 114 ~~~~~v~~vv~~ak~~~ipIRIGv 137 (360)
T PRK00366 114 KRDERVREVVEAAKDYGIPIRIGV 137 (360)
T ss_pred chHHHHHHHHHHHHHCCCCEEEec
Confidence 345667889999999999976543
No 124
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=58.26 E-value=11 Score=39.90 Aligned_cols=111 Identities=25% Similarity=0.272 Sum_probs=68.8
Q ss_pred HHHHHhccCcCC-CcEEEEcCCC--C---------------hhhHHHHHHHHHhcC--CCceEEEeecCHHHHhcHHHHH
Q 012335 184 KEDILNWGVPNK-IDMIALSFVR--K---------------GSDLVEVRNLLRVHA--KNILLMSKVENLEGVANFDDVL 243 (466)
Q Consensus 184 ~~di~~~~~~~~-~d~v~~sfV~--s---------------a~dv~~~r~~l~~~~--~~~~IiaKIE~~~av~nideI~ 243 (466)
.+++ ..+++.+ +|+|.++-.. + ..-+.++++++...+ .++.||+ --|+.+-.+++
T Consensus 227 ~~~~-a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 227 EGDI-AAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred HHHH-HHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 3455 3344444 9999998874 1 123344556565443 3677777 34666666666
Q ss_pred hc----CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhhhhccc
Q 012335 244 AN----SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAAENFINY 317 (466)
Q Consensus 244 ~~----sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE~~~~~ 317 (466)
++ +|++.+||.=|-.- --....+|....+|+.+||| .|...+--|+...+|....|
T Consensus 302 kalaLGAd~V~ig~~~l~al---------~c~~~~~c~~~~cP~Giat~---------~~~~~~~~~~~~~~~~v~~~ 361 (392)
T cd02808 302 KALALGADAVGIGTAALIAL---------GCIQARKCHTNTCPVGVATQ---------DPELRRRLDVEGKAERVANY 361 (392)
T ss_pred HHHHcCCCeeeechHHHHhc---------chHHHHhcCCCCCCcccccC---------ChHhhhhcCCchHHHHHHHH
Confidence 55 89999998766421 11245889999999999999 45554455555555444443
No 125
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=58.00 E-value=92 Score=30.42 Aligned_cols=120 Identities=9% Similarity=0.019 Sum_probs=67.5
Q ss_pred hccCcCCCcEEEEcCC--------CChhhHHHHHHHHHhcCCCceEEE--------ee------cCHHHHhcHHHHHhc-
Q 012335 189 NWGVPNKIDMIALSFV--------RKGSDLVEVRNLLRVHAKNILLMS--------KV------ENLEGVANFDDVLAN- 245 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV--------~sa~dv~~~r~~l~~~~~~~~Iia--------KI------E~~~av~nideI~~~- 245 (466)
+.+.+.|+++|=+.+- -+..++.++++.+.+.|-.+.-+. .+ +..++++.+...++.
T Consensus 20 ~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 99 (275)
T PRK09856 20 RDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMA 99 (275)
T ss_pred HHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 6778999999988421 234578999999988764332221 00 122345555555554
Q ss_pred ----CCeeEEeCCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 246 ----SDAFMVARGDLGMEIPI----EKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 246 ----sDgImiaRgDLg~e~~~----e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
++.|.+..|..+..-.. +.+...-+++...|.++|..+.+ +-+.-...+..+|.+|+-++.++
T Consensus 100 ~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i--E~~~~~~~~~~~t~~~~~~l~~~ 170 (275)
T PRK09856 100 KEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL--EPLTPYESNVVCNANDVLHALAL 170 (275)
T ss_pred HHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE--ecCCCCcccccCCHHHHHHHHHH
Confidence 36777766654432222 34445556777777777765443 21111122345666666666655
No 126
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=57.90 E-value=49 Score=32.42 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-++.+++.|.+.+.++.|.+--+..+. +|++++++.+|.|+-+-.+ +.....+-+.|+++++|++.+.
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D~----------~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCTDN----------VEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 355667778778887777665444333 5788888889988876332 2456778899999999999874
No 127
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=57.70 E-value=83 Score=32.08 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=53.1
Q ss_pred HHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEEeCCcccCcCCch
Q 012335 185 EDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMVARGDLGMEIPIE 263 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImiaRgDLg~e~~~e 263 (466)
+.+ +.+++.++++|.++|-...+.+..+++ . .+++++.+=+.+-. ....+. +|+|.+---+-|-..+..
T Consensus 78 ~~~-~~~~~~~v~~v~~~~g~p~~~i~~lk~----~--g~~v~~~v~s~~~a---~~a~~~GaD~Ivv~g~eagGh~g~~ 147 (307)
T TIGR03151 78 ELV-DLVIEEKVPVVTTGAGNPGKYIPRLKE----N--GVKVIPVVASVALA---KRMEKAGADAVIAEGMESGGHIGEL 147 (307)
T ss_pred HHH-HHHHhCCCCEEEEcCCCcHHHHHHHHH----c--CCEEEEEcCCHHHH---HHHHHcCCCEEEEECcccCCCCCCC
Confidence 344 556889999999988655444444443 3 47899988665433 333333 799887221333222211
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 264 KIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 264 ~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
.-...-+++. ...+.|||.+.-+-
T Consensus 148 ~~~~ll~~v~---~~~~iPviaaGGI~ 171 (307)
T TIGR03151 148 TTMALVPQVV---DAVSIPVIAAGGIA 171 (307)
T ss_pred cHHHHHHHHH---HHhCCCEEEECCCC
Confidence 1122223333 33479999988765
No 128
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=57.60 E-value=62 Score=32.49 Aligned_cols=93 Identities=14% Similarity=0.199 Sum_probs=57.7
Q ss_pred hccCcCCCcEEEEc------CCCChhhHHHH-HHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-----CCeeEEeCCcc
Q 012335 189 NWGVPNKIDMIALS------FVRKGSDLVEV-RNLLRVHAKNILLMSKVENLEGVANFDDVLAN-----SDAFMVARGDL 256 (466)
Q Consensus 189 ~~~~~~~~d~v~~s------fV~sa~dv~~~-r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-----sDgImiaRgDL 256 (466)
++.++.|+|+|++. +.-|.++-.++ +..++..+.+++||+-+- . +.+..-+.++. +|++|+.+--+
T Consensus 28 ~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 28 EWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 78889999998765 33344444444 444555556788999884 2 33333333333 59999976655
Q ss_pred cCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 257 GMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 257 g~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
. ..+.+.+...-+.+.+ +.+.|+++--
T Consensus 106 ~-~~~~~~i~~~f~~v~~---~~~~pi~lYn 132 (289)
T cd00951 106 T-EAPQEGLYAHVEAVCK---STDLGVIVYN 132 (289)
T ss_pred C-CCCHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 3 2344566666666644 4589998763
No 129
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=57.54 E-value=40 Score=37.16 Aligned_cols=88 Identities=10% Similarity=0.167 Sum_probs=61.6
Q ss_pred CCcEEEEcCCCChhhHHHHHHHHHhc-------CCCceEEEeecCHHHHhcHHHHHhcC---------------------
Q 012335 195 KIDMIALSFVRKGSDLVEVRNLLRVH-------AKNILLMSKVENLEGVANFDDVLANS--------------------- 246 (466)
Q Consensus 195 ~~d~v~~sfV~sa~dv~~~r~~l~~~-------~~~~~IiaKIE~~~av~nideI~~~s--------------------- 246 (466)
+--|+.+|+.++++++.--.+.+... -..+++-..||+..|.-+++||+-..
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 44578899999999998876655422 24789999999999999999999763
Q ss_pred -----CeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeE
Q 012335 247 -----DAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVV 284 (466)
Q Consensus 247 -----DgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi 284 (466)
|.++=.|..++++.|+ +-...+..+..|.+.|...+
T Consensus 283 ~~~~~~~vlPdR~~v~m~~pf--m~aY~~llv~tch~Rga~a~ 323 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQPF--MRAYEDLLVRTCHRRGAHAM 323 (526)
T ss_dssp TCCGCCBB---GGGGGCGSHH--HHHHHHHHHHHHHHTT-HHH
T ss_pred hhhCCCccccccccccccCHH--HHHHHHHHHHHHhhcCCccc
Confidence 2334445555555554 66888999999999997654
No 130
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=56.88 E-value=22 Score=37.41 Aligned_cols=87 Identities=20% Similarity=0.186 Sum_probs=53.1
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEEEeccccccccccccCChhhhhhhcCccCcEE-EEcCCC-CCCCC
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVP-VLSSGS-ARASD 421 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P-~l~~~~-~~~~~ 421 (466)
+.+++.++|.|+||+||.-+|. .+|..|-|.+| | .||+.--.|-..|--|+.= +..+.. -...|
T Consensus 283 ~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvT-P---------ICPhSLSFRPIIlPds~~L~I~i~~dsR~~aw 352 (409)
T KOG2178|consen 283 KVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVT-P---------ICPHSLSFRPIILPDSSELRVEVPLDSRSTAW 352 (409)
T ss_pred EEecceEEEecCCchhhhHhhcCCceecCCCCeEEEe-c---------cCCCcccccceEccCccEEEEEeCccccccce
Confidence 5689999999999999999887 69999999993 2 1333333333333322211 111111 12233
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec
Q 012335 422 EESTEETIEFALQHAKAKGLCRPGDSVVALHRM 454 (466)
Q Consensus 422 ~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g~ 454 (466)
. +.| .+.+.-+..||.+.+++..
T Consensus 353 v-SfD---------G~~r~El~~GD~i~I~tS~ 375 (409)
T KOG2178|consen 353 V-SFD---------GRPRQELSLGDYIDITTSR 375 (409)
T ss_pred E-Eec---------CcchhhccCCceEEEEecc
Confidence 2 222 4566668899999988753
No 131
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=56.32 E-value=62 Score=35.34 Aligned_cols=112 Identities=13% Similarity=0.207 Sum_probs=66.3
Q ss_pred hhcHHHHHhccCcCCCcEEEEcCC--CChhhHHHHHHHHHhcCCCceEEE-eecCHHHHhcHHHHHhc-CCeeEEe--CC
Q 012335 181 EKDKEDILNWGVPNKIDMIALSFV--RKGSDLVEVRNLLRVHAKNILLMS-KVENLEGVANFDDVLAN-SDAFMVA--RG 254 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~sfV--~sa~dv~~~r~~l~~~~~~~~Iia-KIE~~~av~nideI~~~-sDgImia--Rg 254 (466)
+.+.+.+ +..++.|+|.|.+..- .+...++.++++ .+.-.+..|+| -+-|++.... .+++ +|+|.++ +|
T Consensus 240 ~~~~~~~-~~l~~ag~d~i~id~a~G~s~~~~~~i~~i-k~~~~~~~v~aG~V~t~~~a~~---~~~aGad~I~vg~g~G 314 (495)
T PTZ00314 240 PEDIERA-AALIEAGVDVLVVDSSQGNSIYQIDMIKKL-KSNYPHVDIIAGNVVTADQAKN---LIDAGADGLRIGMGSG 314 (495)
T ss_pred HHHHHHH-HHHHHCCCCEEEEecCCCCchHHHHHHHHH-HhhCCCceEEECCcCCHHHHHH---HHHcCCCEEEECCcCC
Confidence 3455666 5678899999997764 333323333332 22224688888 5666655543 3444 8999874 55
Q ss_pred ccc-----CcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 255 DLG-----MEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 255 DLg-----~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
--. ...+.+.+ .+-..+.+.|++.|.|+|...-+.. -.|++.|
T Consensus 315 s~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~vIadGGi~~------------~~di~kA 362 (495)
T PTZ00314 315 SICITQEVCAVGRPQA-SAVYHVARYARERGVPCIADGGIKN------------SGDICKA 362 (495)
T ss_pred cccccchhccCCCChH-HHHHHHHHHHhhcCCeEEecCCCCC------------HHHHHHH
Confidence 211 11222322 2334666788889999998666553 2677777
No 132
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=56.19 E-value=52 Score=27.54 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
=+..+++++.+.|-+..+.+ -++.++++.+...|.|+++ +.+...++++-+.+...|+||.+
T Consensus 19 l~~k~~~~~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEE
Confidence 45778888888776655444 3555677767778988886 46778899999999999999876
No 133
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=55.37 E-value=54 Score=31.65 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-++.+++.|.+.+.++.|-+--+.. .-+|+++++.-.|.|+.+-.+. .....+-+.|+++++|.|.+.
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~----------~~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNF----------ATRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEEE
Confidence 3566677788878777766554443 2367888888899988874332 355678899999999998863
No 134
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=55.09 E-value=59 Score=31.21 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHc-CCCeEEee
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQ-GKPVVTAT 287 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~-gkPvi~AT 287 (466)
++.+++.|.+.+..+.+-+.-+.... +|++++++-.|.|+-+-. . +.....+...|.+. ++|+|.++
T Consensus 83 a~~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~D---------~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 83 VEALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEAFD---------N-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEECCC---------C-HHHHHHHHHHHHHhCCCCEEEee
Confidence 44566777777777777666555544 578888888888877621 1 22455788899998 99999885
No 135
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=54.61 E-value=74 Score=31.14 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=54.5
Q ss_pred cHHHHHhccCcCCCcEEEEc--C---CCChhhHHHHH--------------HHHHhcC--CCceEEEeec-CH---HHHh
Q 012335 183 DKEDILNWGVPNKIDMIALS--F---VRKGSDLVEVR--------------NLLRVHA--KNILLMSKVE-NL---EGVA 237 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~s--f---V~sa~dv~~~r--------------~~l~~~~--~~~~IiaKIE-~~---~av~ 237 (466)
-.+.+ +...+.|+|++=+- | +-+...|+.+- +.+.+.. .+++++.+.. ++ .|++
T Consensus 16 ~~~~~-~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~ 94 (242)
T cd04724 16 TLEIL-KALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLE 94 (242)
T ss_pred HHHHH-HHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHH
Confidence 34445 55567899987654 5 55555565422 2222221 1456666555 43 2344
Q ss_pred cH-HHHHhc-CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 238 NF-DDVLAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 238 ni-deI~~~-sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
++ ++..++ +||+++. || |+| -.++++..|+++|...+.+
T Consensus 95 ~fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 95 RFLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEEE
Confidence 44 444444 6999995 55 444 4578999999999876654
No 136
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=54.33 E-value=76 Score=34.80 Aligned_cols=106 Identities=17% Similarity=0.205 Sum_probs=60.5
Q ss_pred hhcHHHHHhccCcCCCcEEEEcCCC--ChhhHHHHHHHHHhcCCCceEEEe-ecCHHHHhcHHHHHhcCCeeEEe--CCc
Q 012335 181 EKDKEDILNWGVPNKIDMIALSFVR--KGSDLVEVRNLLRVHAKNILLMSK-VENLEGVANFDDVLANSDAFMVA--RGD 255 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~sfV~--sa~dv~~~r~~l~~~~~~~~IiaK-IE~~~av~nideI~~~sDgImia--RgD 255 (466)
+.+.+-+ +..++.|+|.|++---. +...++.+ +.+++.-.+..||++ |-|++...++.+ .=+|+|.++ +|-
T Consensus 247 ~~~~~r~-~~l~~ag~d~i~iD~~~g~~~~~~~~i-~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~ 322 (505)
T PLN02274 247 ESDKERL-EHLVKAGVDVVVLDSSQGDSIYQLEMI-KYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGS 322 (505)
T ss_pred ccHHHHH-HHHHHcCCCEEEEeCCCCCcHHHHHHH-HHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCc
Confidence 4455565 56688999999886432 22211222 233333346788875 999888766655 348999986 331
Q ss_pred ccCc-----CCchhHHHHHHHHHHHHHHcCCCeEEeehhhH
Q 012335 256 LGME-----IPIEKIFLAQKVMIHKANIQGKPVVTATQMLE 291 (466)
Q Consensus 256 Lg~e-----~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLe 291 (466)
-+.. .+.+.+..+ ..+-+.+++.+.|||.+.-+-.
T Consensus 323 ~~~t~~~~~~g~~~~~~i-~~~~~~~~~~~vpVIadGGI~~ 362 (505)
T PLN02274 323 ICTTQEVCAVGRGQATAV-YKVASIAAQHGVPVIADGGISN 362 (505)
T ss_pred cccCccccccCCCcccHH-HHHHHHHHhcCCeEEEeCCCCC
Confidence 1111 111221122 2245556678999998877653
No 137
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=53.54 E-value=56 Score=32.10 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-++.+++.|.+.+.++.|.+.-+... -+|++++++-.|-|+.+-.+ +..+..+-+.|+++++|++.+.
T Consensus 87 Ka~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D~----------~~~r~~ln~~~~~~~ip~v~~~ 154 (245)
T PRK05690 87 KVESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTDN----------VATRNQLNRACFAAKKPLVSGA 154 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCCC----------HHHHHHHHHHHHHhCCEEEEee
Confidence 35666777777787777766544433 25788889889988876322 2456788899999999998763
No 138
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=52.70 E-value=86 Score=31.90 Aligned_cols=94 Identities=10% Similarity=0.016 Sum_probs=57.5
Q ss_pred hccCcCCCcEEEEcC------CCChhhHH-HHHHHHHhcCCCceEEEeec---CHHHHhcHHHHHhc-CCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALSF------VRKGSDLV-EVRNLLRVHAKNILLMSKVE---NLEGVANFDDVLAN-SDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~sf------V~sa~dv~-~~r~~l~~~~~~~~IiaKIE---~~~av~nideI~~~-sDgImiaRgDLg 257 (466)
++.++.|+++|++.- .-|.++=. -++...+..+.+++||+-+= +.++++....--+. +|++|+-.-..-
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~ 115 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWL 115 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 677889999998732 22333333 33445555567899999984 44555555554444 799999765431
Q ss_pred CcCCchhHHHHHHHHHHHHHHc-CCCeEEe
Q 012335 258 MEIPIEKIFLAQKVMIHKANIQ-GKPVVTA 286 (466)
Q Consensus 258 ~e~~~e~v~~~qk~ii~~~~~~-gkPvi~A 286 (466)
...-+.+...-+.|.+ +. +.|+++-
T Consensus 116 -~~~~~~l~~yf~~va~---a~~~lPv~iY 141 (309)
T cd00952 116 -PLDVDTAVQFYRDVAE---AVPEMAIAIY 141 (309)
T ss_pred -CCCHHHHHHHHHHHHH---hCCCCcEEEE
Confidence 1233555555555554 46 5898864
No 139
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=52.56 E-value=44 Score=34.70 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=61.6
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHH----------------HhcCCCceEEEeecCHHHHhcHHHHH
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLL----------------RVHAKNILLMSKVENLEGVANFDDVL 243 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l----------------~~~~~~~~IiaKIE~~~av~nideI~ 243 (466)
.+.+++.+ ..|++.|+|.|.+.- +|+..++++- ...+.....+.+|.+++..+.+.+..
T Consensus 12 ~~~~k~~v-t~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~ 86 (344)
T PRK02290 12 WEERKEVV-TTALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELA 86 (344)
T ss_pred chhHHHHH-HHHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhh
Confidence 36777788 899999999998863 6666665431 12234667888999999999999999
Q ss_pred hcCCeeEEeCCcccCcCCchhHHH
Q 012335 244 ANSDAFMVARGDLGMEIPIEKIFL 267 (466)
Q Consensus 244 ~~sDgImiaRgDLg~e~~~e~v~~ 267 (466)
..+|-++|--.|-. -||+|.+-.
T Consensus 87 ~~~~~viv~~~dW~-iIPlEnlIA 109 (344)
T PRK02290 87 KEVDYVIVEGRDWT-IIPLENLIA 109 (344)
T ss_pred ccCCEEEEECCCCc-EecHHHHHh
Confidence 99898888766654 478887544
No 140
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=52.33 E-value=1.1e+02 Score=30.86 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=58.1
Q ss_pred hccCcCC-CcEEEEc------CCCChhhHHHHH-HHHHhcCCCceEEEeec---CHHHHhcHHHHHhc-CCeeEEeCCcc
Q 012335 189 NWGVPNK-IDMIALS------FVRKGSDLVEVR-NLLRVHAKNILLMSKVE---NLEGVANFDDVLAN-SDAFMVARGDL 256 (466)
Q Consensus 189 ~~~~~~~-~d~v~~s------fV~sa~dv~~~r-~~l~~~~~~~~IiaKIE---~~~av~nideI~~~-sDgImiaRgDL 256 (466)
+|.++.| +|+|++. +.-|.++=.++- ...+..+.++.|++-+- +.++++....-.+. +|++|+.+-.+
T Consensus 28 ~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y 107 (290)
T TIGR00683 28 RHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY 107 (290)
T ss_pred HHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 7888999 9999776 444555555543 34455556789999985 34445444444333 69999976543
Q ss_pred cCcCCchhHHHHHHHHHHHHHHc-CCCeEEe
Q 012335 257 GMEIPIEKIFLAQKVMIHKANIQ-GKPVVTA 286 (466)
Q Consensus 257 g~e~~~e~v~~~qk~ii~~~~~~-gkPvi~A 286 (466)
- ....+++...-+.+.+ +. +.|+++-
T Consensus 108 ~-~~~~~~i~~yf~~v~~---~~~~lpv~lY 134 (290)
T TIGR00683 108 Y-KFSFPEIKHYYDTIIA---ETGGLNMIVY 134 (290)
T ss_pred C-CCCHHHHHHHHHHHHh---hCCCCCEEEE
Confidence 2 2233555555555544 34 6888864
No 141
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=52.01 E-value=67 Score=25.81 Aligned_cols=54 Identities=31% Similarity=0.386 Sum_probs=42.5
Q ss_pred CCCCCHHHHHH-HHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCC-CC
Q 012335 19 PASRSVEMAEK-LLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTK-GP 77 (466)
Q Consensus 19 p~~~~~~~l~~-li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~-Gp 77 (466)
-.+.+=|.+.. +-..|+.++|-.-++|......++++.++ -|..++|-.|-+ ||
T Consensus 17 S~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk-----~G~~~~itpDGPrGP 72 (74)
T PF04028_consen 17 SRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALK-----EGYSIAITPDGPRGP 72 (74)
T ss_pred ccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHH-----CCCeEEEeCCCCCCC
Confidence 34667788877 55679999999999999988777777776 367889988876 55
No 142
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=52.00 E-value=1.1e+02 Score=30.50 Aligned_cols=100 Identities=9% Similarity=0.089 Sum_probs=59.6
Q ss_pred HHHHHhccCcCCCcEEEEcC------CCChhhH-HHHHHHHHhcCCCceEEEeecC---HHHHhcHHHHHhc-CCeeEEe
Q 012335 184 KEDILNWGVPNKIDMIALSF------VRKGSDL-VEVRNLLRVHAKNILLMSKVEN---LEGVANFDDVLAN-SDAFMVA 252 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sf------V~sa~dv-~~~r~~l~~~~~~~~IiaKIE~---~~av~nideI~~~-sDgImia 252 (466)
.+.+.+|.++.|+|++.+.= --|.++= +-++..++..+.+++|++-+-. .++++.+...-+. +|++|+.
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~ 103 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVI 103 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEe
Confidence 33333788899999998842 2233333 3333444555678999999854 4455555444444 6999987
Q ss_pred CCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 253 RGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 253 RgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
+-.+. ....+.+...-+.|. .+.+.|+++-.
T Consensus 104 ~P~~~-~~s~~~l~~y~~~ia---~~~~~pi~iYn 134 (289)
T PF00701_consen 104 PPYYF-KPSQEELIDYFRAIA---DATDLPIIIYN 134 (289)
T ss_dssp ESTSS-SCCHHHHHHHHHHHH---HHSSSEEEEEE
T ss_pred ccccc-cchhhHHHHHHHHHH---hhcCCCEEEEE
Confidence 65443 244556555555544 56789988743
No 143
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.73 E-value=19 Score=35.89 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=28.6
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
...++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 134 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~i 169 (259)
T PRK00561 134 KYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQI 169 (259)
T ss_pred EEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEE
Confidence 4578999999999999999998 5788999998
No 144
>TIGR03586 PseI pseudaminic acid synthase.
Probab=51.11 E-value=50 Score=34.12 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=49.6
Q ss_pred CChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEEeCCccc
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMVARGDLG 257 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImiaRgDLg 257 (466)
|+..+...|.+++.+.|++++.-+| |...+ |.+.+. .|.+=||-||+.
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpf-----d~~sv--------------------------d~l~~~~v~~~KI~S~~~~ 122 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPF-----DETAV--------------------------DFLESLDVPAYKIASFEIT 122 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccC-----CHHHH--------------------------HHHHHcCCCEEEECCcccc
Confidence 4555555554666677777766665 33322 222233 688888988884
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 258 MEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 258 ~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
. + .+++.+.+.|||||+.|.|- |-+|+...+..
T Consensus 123 n-~----------~LL~~va~~gkPvilstG~~---------t~~Ei~~Av~~ 155 (327)
T TIGR03586 123 D-L----------PLIRYVAKTGKPIIMSTGIA---------TLEEIQEAVEA 155 (327)
T ss_pred C-H----------HHHHHHHhcCCcEEEECCCC---------CHHHHHHHHHH
Confidence 2 2 34556777899999999762 45555555444
No 145
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=50.89 E-value=94 Score=31.28 Aligned_cols=97 Identities=8% Similarity=0.115 Sum_probs=58.9
Q ss_pred HHHHHhccCcCCCcEEEEc------CCCChhhHHHH-HHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-----CCeeEE
Q 012335 184 KEDILNWGVPNKIDMIALS------FVRKGSDLVEV-RNLLRVHAKNILLMSKVENLEGVANFDDVLAN-----SDAFMV 251 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~s------fV~sa~dv~~~-r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-----sDgImi 251 (466)
.+.+.++.++.|+|+|++. +--|.++=.++ +...+..+.+..|++-+-+ +.+..-+.++. +|++|+
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEE
Confidence 3333378889999999874 33444544444 3445555567899999842 24333333333 599998
Q ss_pred eCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 252 ARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 252 aRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
-+--+.- ..-+.+...-+.+.+ +.+.|+++-
T Consensus 106 ~pP~y~~-~s~~~i~~~f~~v~~---a~~~pvilY 136 (296)
T TIGR03249 106 LPPYLIN-GEQEGLYAHVEAVCE---STDLGVIVY 136 (296)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHh---ccCCCEEEE
Confidence 7654422 233565665666655 457898875
No 146
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=50.87 E-value=45 Score=33.67 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCce
Q 012335 20 ASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILC 68 (466)
Q Consensus 20 ~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i 68 (466)
-+.+.+.+++.+++|.+.+-|.-||.+.++..+.-..+++.+..+|.++
T Consensus 83 H~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 83 HGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred CCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3468999999999999999999999999999999999999888888763
No 147
>PRK15456 universal stress protein UspG; Provisional
Probab=50.35 E-value=34 Score=29.80 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCcEEEEEcCC--------chHHHHHHhcCCCCCEEEE
Q 012335 340 SSAVRTANCIKAALILVLTRG--------GTTAKMVSKYRPSMPILSV 379 (466)
Q Consensus 340 ~~av~~a~~~~a~~Ivv~T~s--------G~ta~~vSk~RP~~PIiAv 379 (466)
...++.|.+.++++||+-|+. |+++..+.+.-| |||+.+
T Consensus 95 ~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~-~pVLvV 141 (142)
T PRK15456 95 DEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHAN-LPVLVV 141 (142)
T ss_pred HHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCC-CCEEEe
Confidence 344567889999999988763 566777777654 999987
No 148
>PLN02623 pyruvate kinase
Probab=50.10 E-value=2.3e+02 Score=31.74 Aligned_cols=180 Identities=11% Similarity=0.081 Sum_probs=98.9
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHH---------------------------------hcCCCceE
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLR---------------------------------VHAKNILL 226 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~---------------------------------~~~~~~~I 226 (466)
+.+|...+.++..+.|-+...+..+++++.++.+.+++. +.|+ +.+
T Consensus 302 ~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gK-pvi 380 (581)
T PLN02623 302 DAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGK-PVI 380 (581)
T ss_pred CHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCC-CEE
Confidence 566777776666667788889999999999999887764 1122 223
Q ss_pred EE------eecCHHH-----HhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhc
Q 012335 227 MS------KVENLEG-----VANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIK 295 (466)
Q Consensus 227 ia------KIE~~~a-----v~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~ 295 (466)
+| +|+++.. -+-...+..-+|++|++ +|-+.--=+.+....+.+|+..+.+.- +-- ........
T Consensus 381 vaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs-~Eta~G~yPveaV~~m~~I~~~aE~~~-~~~---~~~~~~~~ 455 (581)
T PLN02623 381 VATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLS-GETAHGKFPLKAVKVMHTVALRTEATL-PEG---TTPPNLGQ 455 (581)
T ss_pred EECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEec-chhhcCcCHHHHHHHHHHHHHHHHhhc-ccc---hhhhhhcc
Confidence 33 3555544 23333444458999987 664433323344567778888777531 100 01100000
Q ss_pred CCCCCHHHHHhHHHhh-hhhccchhhHHHHHhhCCCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCC
Q 012335 296 SPRPTRAEATDVANAA-ENFINYGDLFKKIMETAPVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSM 374 (466)
Q Consensus 296 ~p~PTRAEvsDv~naa-E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~~ 374 (466)
....+..| -++.+| +.+..... . +.... .-...|..+|+--...-|+++|.+-+++|.++=++--.
T Consensus 456 ~~~~~~~~--~ia~sA~~~A~~l~a--~-Ivv~T--------~sG~tA~~lSr~RP~~pI~avT~~~~~aR~L~L~~GV~ 522 (581)
T PLN02623 456 AFKNHMSE--MFAFHATMMANTLGT--S-IIVFT--------RTGFMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVC 522 (581)
T ss_pred ccCCChHH--HHHHHHHHHHHhcCC--c-EEEEC--------CCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccccE
Confidence 00011112 244332 11100000 0 11100 11234555666555556999999999999999999888
Q ss_pred CEEE
Q 012335 375 PILS 378 (466)
Q Consensus 375 PIiA 378 (466)
|++.
T Consensus 523 P~~~ 526 (581)
T PLN02623 523 PIYM 526 (581)
T ss_pred EEec
Confidence 8754
No 149
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=50.07 E-value=42 Score=32.15 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=46.6
Q ss_pred cCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEE
Q 012335 191 GVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMV 251 (466)
Q Consensus 191 ~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImi 251 (466)
-.+.|+|+|.+.+ ++.+++.++-+++++.|.+..|.-+-+| .++.++.++...|.|+|
T Consensus 76 ~~~~g~~~i~~H~-E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 76 FAEAGADYITFHA-EATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLV 133 (201)
T ss_dssp HHHHT-SEEEEEG-GGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE
T ss_pred HHhcCCCEEEEcc-cchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEE
Confidence 3678999887765 6778888888999998888888888887 67889999999999888
No 150
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.04 E-value=57 Score=34.09 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeeh
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQ 288 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATq 288 (466)
.++.++++..+ ..+.+++-+-+.+.++-+.+ .+|.+-||-+++-. -.+++++.+.||||++.|.
T Consensus 153 gl~~L~~~~~e--~Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~n-----------~~LL~~va~t~kPVllk~G 216 (352)
T PRK13396 153 ALELLAAAREA--TGLGIITEVMDAADLEKIAE---VADVIQVGARNMQN-----------FSLLKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHHHHHHHH--cCCcEEEeeCCHHHHHHHHh---hCCeEEECcccccC-----------HHHHHHHHccCCeEEEeCC
Confidence 34445555544 35889999888877766655 48999999777642 3457888889999999988
Q ss_pred hhHhhhcCCCCCHHHHHhHHHhhhhh
Q 012335 289 MLESMIKSPRPTRAEATDVANAAENF 314 (466)
Q Consensus 289 mLeSM~~~p~PTRAEvsDv~naaE~~ 314 (466)
|.-+ +.|+-+|+|..
T Consensus 217 ~~~t-----------~ee~~~A~e~i 231 (352)
T PRK13396 217 MAAT-----------IDEWLMAAEYI 231 (352)
T ss_pred CCCC-----------HHHHHHHHHHH
Confidence 7633 55666776643
No 151
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=49.42 E-value=19 Score=36.23 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=29.5
Q ss_pred HhcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 347 NCIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 347 ~~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
.+..++.+++-|+||+||..+|. ..|..+.+++
T Consensus 162 ~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~l 198 (281)
T COG0061 162 ESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQL 198 (281)
T ss_pred EEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEE
Confidence 45678999999999999999998 4789999999
No 152
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=48.38 E-value=96 Score=26.65 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=52.9
Q ss_pred CChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeE
Q 012335 205 RKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVV 284 (466)
Q Consensus 205 ~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi 284 (466)
.|.==+...+++....|.++.|.|.=|+. +++-+...|.+++| +.+.+.-+++-+.+...|+||-
T Consensus 13 STSlLV~Km~~aA~~kg~~~~I~A~s~~e-----~~~~~~~~DvvLlG----------PQv~y~~~~~~~~~~~~giPV~ 77 (102)
T COG1440 13 STSLLVTKMKKAAESKGKDVTIEAYSETE-----LSEYIDNADVVLLG----------PQVRYMLKQLKEAAEEKGIPVE 77 (102)
T ss_pred cHHHHHHHHHHHHHhCCCceEEEEechhH-----HHHhhhcCCEEEEC----------hHHHHHHHHHHHHhcccCCCeE
Confidence 34445777888888889999999976664 55555689999998 4778888999999999999987
Q ss_pred E
Q 012335 285 T 285 (466)
Q Consensus 285 ~ 285 (466)
+
T Consensus 78 v 78 (102)
T COG1440 78 V 78 (102)
T ss_pred E
Confidence 5
No 153
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=48.27 E-value=31 Score=36.73 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=41.5
Q ss_pred EecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHH
Q 012335 15 CTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTA 60 (466)
Q Consensus 15 ~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~ 60 (466)
|.||-.-++.+-+.-|.++|+|+.=|+-|.|+-.+..++|+.+|+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 5678778889999999999999999999999999999999998863
No 154
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=47.31 E-value=1.5e+02 Score=25.52 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.5
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHH
Q 012335 10 KTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHA 48 (466)
Q Consensus 10 ~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~ 48 (466)
..++..+..+...+.+.++.|.++|++.+++++...+.+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~ 114 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEE 114 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHH
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHH
Confidence 444544444444459999999999999999999999987
No 155
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.15 E-value=26 Score=29.95 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=24.2
Q ss_pred ecchhhhhccCCCCEEEEeCCeEEEEEEEEe
Q 012335 115 MSYKKLAEDLRPGSVILCSDGTISLTVLDCA 145 (466)
Q Consensus 115 v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~ 145 (466)
++++. ...++|||+|.+..+++..+|+++.
T Consensus 26 l~d~k-rr~ik~GD~IiF~~~~l~v~V~~vr 55 (111)
T COG4043 26 LADPK-RRQIKPGDKIIFNGDKLKVEVIDVR 55 (111)
T ss_pred ecCHh-hcCCCCCCEEEEcCCeeEEEEEEEe
Confidence 44444 3678999999999999999998874
No 156
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=47.14 E-value=47 Score=30.28 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCc
Q 012335 24 VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGIL 67 (466)
Q Consensus 24 ~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~ 67 (466)
.+.+++++++|++.+-|....++..++.+.++.+++..+.++.+
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~ 58 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVP 58 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 57789999999999999888888888888888888766555543
No 157
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=47.12 E-value=88 Score=29.96 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=46.3
Q ss_pred CCeEEEEecC--CCCCC----HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceE-EEe
Q 012335 9 PKTKIVCTLG--PASRS----VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCA-VML 72 (466)
Q Consensus 9 r~tkIi~TiG--p~~~~----~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~-i~~ 72 (466)
.++|||.+-= ..+.+ .+.+++|.+.|.++++|-..-.+.++..++++..++..+..+.|+. +.+
T Consensus 112 ~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~M 182 (224)
T PF01487_consen 112 GGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISM 182 (224)
T ss_dssp TTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEE
T ss_pred CCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEc
Confidence 5789999873 22223 3667889999999999999999999999888888888776666744 444
No 158
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=46.90 E-value=1.2e+02 Score=30.23 Aligned_cols=120 Identities=6% Similarity=0.012 Sum_probs=77.1
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHH
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLA 268 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~ 268 (466)
+.+.+.|+|+|.++..- .++..++.+.+.+.|-+.-.+..=.| ..+.+..|++.++|.+-.=+-.|+.=--..++.-
T Consensus 113 ~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~ 189 (263)
T CHL00200 113 KKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKK 189 (263)
T ss_pred HHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHH
Confidence 55688999999999875 47788888888887754444443334 4668999999999665431222221111345555
Q ss_pred HHHHHHHHHHc-CCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-hhhhccchhh
Q 012335 269 QKVMIHKANIQ-GKPVVTATQMLESMIKSPRPTRAEATDVANA-AENFINYGDL 320 (466)
Q Consensus 269 qk~ii~~~~~~-gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-aE~~~~~~~~ 320 (466)
.+.+++..+++ ++|+.+-- ..=|++.+..+..+ |.-.+--..+
T Consensus 190 ~~~~i~~ir~~t~~Pi~vGF---------GI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 190 LKKLIETIKKMTNKPIILGF---------GISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred HHHHHHHHHHhcCCCEEEEC---------CcCCHHHHHHHHhcCCCEEEECHHH
Confidence 56777777654 88887643 35667777777776 5544433333
No 159
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=46.65 E-value=78 Score=30.32 Aligned_cols=87 Identities=14% Similarity=0.261 Sum_probs=50.3
Q ss_pred EecCCCEEEEEeC----CCCCCCccEEeecchhhh--hccCCCCEEEEe--CCeEEEEEEEEecCCCeEEEEEeeCeEec
Q 012335 91 QLVQGQEITISTD----YSLKGDEKMISMSYKKLA--EDLRPGSVILCS--DGTISLTVLDCAKELGLVRCRCENSAVLG 162 (466)
Q Consensus 91 ~l~~G~~v~l~~~----~~~~~~~~~i~v~~~~~~--~~v~~Gd~i~id--dG~i~l~V~~v~~~~~~i~~~v~~gG~l~ 162 (466)
-.+.|+++.++.. +..-..+....++-..|. ..+++|+.++.+ +|.+.++|++++ ++.| +|.-+..|-
T Consensus 51 G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~--~d~V--~vD~NHPLA 126 (196)
T PRK10737 51 GHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVE--DDHV--VVDGNHMLA 126 (196)
T ss_pred CCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEc--CCEE--EEECCCcCC
Confidence 4678888888765 222222334556655664 358999999874 788889999985 4454 344444443
Q ss_pred CCCccccCCcccCCCCCChh
Q 012335 163 ERKNVNLPGVIVDLPTLTEK 182 (466)
Q Consensus 163 ~~Kgvnlp~~~~~lp~lte~ 182 (466)
. |.+.+--.-+++..-|+.
T Consensus 127 G-~~L~F~veV~~vr~at~e 145 (196)
T PRK10737 127 G-QNLKFNVEVVAIREATEE 145 (196)
T ss_pred C-CEEEEEEEEEEeccCCHH
Confidence 3 344443333333333433
No 160
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.41 E-value=52 Score=33.43 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=46.9
Q ss_pred cHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEe--ecCHHHHhcHHHHHhc-CCeeEEeC
Q 012335 183 DKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSK--VENLEGVANFDDVLAN-SDAFMVAR 253 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaK--IE~~~av~nideI~~~-sDgImiaR 253 (466)
+.+.+ ..+++.|+|+|.+-. -+.++++++.+.+.+.+.++.+.|- | -.+|+.+.++. .|+|-++.
T Consensus 205 tleea-~eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~~~i~leAsGGI----t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 205 TLEQV-QEALEYGADIIMLDN-MPVDLMQQAVQLIRQQNPRVKIEASGNI----TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHHHHhcCCCeEEEEECCC----CHHHHHHHHHcCCCEEEEch
Confidence 44555 567899999999995 5678888877777654556555542 3 24688888887 89998874
No 161
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=46.16 E-value=3.7e+02 Score=28.08 Aligned_cols=84 Identities=12% Similarity=0.187 Sum_probs=57.9
Q ss_pred cCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHH
Q 012335 191 GVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQK 270 (466)
Q Consensus 191 ~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk 270 (466)
.-+.|+|.|-++ |.+.++...++++-... +++++|-|--.-- --++.+-...|.+=|.+|..|.+= --+
T Consensus 45 L~~aG~dIVRvt-v~~~e~A~A~~~Ik~~~--~vPLVaDiHf~~r-la~~~~~~g~~k~RINPGNig~~~-------~v~ 113 (361)
T COG0821 45 LERAGCDIVRVT-VPDMEAAEALKEIKQRL--NVPLVADIHFDYR-LALEAAECGVDKVRINPGNIGFKD-------RVR 113 (361)
T ss_pred HHHcCCCEEEEe-cCCHHHHHHHHHHHHhC--CCCEEEEeeccHH-HHHHhhhcCcceEEECCcccCcHH-------HHH
Confidence 356899987776 56666666666655443 7999999854311 112333333799999999887532 457
Q ss_pred HHHHHHHHcCCCeEE
Q 012335 271 VMIHKANIQGKPVVT 285 (466)
Q Consensus 271 ~ii~~~~~~gkPvi~ 285 (466)
.++++|+.+|||+=+
T Consensus 114 ~vVe~Ak~~g~piRI 128 (361)
T COG0821 114 EVVEAAKDKGIPIRI 128 (361)
T ss_pred HHHHHHHHcCCCEEE
Confidence 899999999999755
No 162
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.10 E-value=22 Score=35.61 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=29.1
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 145 ~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~l 180 (265)
T PRK04885 145 RFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQL 180 (265)
T ss_pred EEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEE
Confidence 3468999999999999999999 7899999999
No 163
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=45.83 E-value=48 Score=35.99 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=39.6
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 10 KTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 10 ~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
+.++-+-+|+.-.+.+.++.|+++|++++-++-+||..+...+.++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 45566677765567899999999999999999999998776666666654
No 164
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=45.75 E-value=3e+02 Score=26.96 Aligned_cols=124 Identities=14% Similarity=0.130 Sum_probs=70.6
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcCCCChh-hHHHHHHHHHhcCCCceEEEee-cCHHHHhcHHHHHhc-CCeeEEe--
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSFVRKGS-DLVEVRNLLRVHAKNILLMSKV-ENLEGVANFDDVLAN-SDAFMVA-- 252 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sfV~sa~-dv~~~r~~l~~~~~~~~IiaKI-E~~~av~nideI~~~-sDgImia-- 252 (466)
.+|..++..|.+...+.|+|.|=+.|-...+ +.+.++.+. +.+.+.++.+-. -+.+++ +...+. .|.|-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~-~~~~~~~~~~~~r~~~~~v---~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIV-ALGLPARLIVWCRAVKEDI---EAALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEeccCCHHHH---HHHHhCCcCEEEEEEe
Confidence 4566777777577788999999887655443 334555544 334456666553 244444 333332 3544442
Q ss_pred CCcc----cCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhh
Q 012335 253 RGDL----GMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAA 311 (466)
Q Consensus 253 RgDL----g~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naa 311 (466)
-.|. -.....++.....+.+++.|++.|..|.+.. ...++-+.+++.+++..+
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~ 148 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVA 148 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHH
Confidence 1111 0112234445566789999999998876533 133455667777766663
No 165
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=45.74 E-value=1.5e+02 Score=30.16 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=59.4
Q ss_pred HHhccCcCCCcEEEEc------CCCChhhHHHH-HHHHHhcCCCceEEEeec---CHHHHhcHHHHHhc-CCeeEEeCCc
Q 012335 187 ILNWGVPNKIDMIALS------FVRKGSDLVEV-RNLLRVHAKNILLMSKVE---NLEGVANFDDVLAN-SDAFMVARGD 255 (466)
Q Consensus 187 i~~~~~~~~~d~v~~s------fV~sa~dv~~~-r~~l~~~~~~~~IiaKIE---~~~av~nideI~~~-sDgImiaRgD 255 (466)
+.+|.++.|+|+|++. +--|.++=.++ +...+..+.++++|+-+= +.++++....--+. +||||+-.-.
T Consensus 30 lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~Py 109 (299)
T COG0329 30 LVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPY 109 (299)
T ss_pred HHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3378899999998763 33444444444 445555567888999873 33444444333333 6999986544
Q ss_pred ccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 256 LGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 256 Lg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
+- ..+.+.+...-+.|.+++ +.|+|+-
T Consensus 110 Y~-k~~~~gl~~hf~~ia~a~---~lPvilY 136 (299)
T COG0329 110 YN-KPSQEGLYAHFKAIAEAV---DLPVILY 136 (299)
T ss_pred Cc-CCChHHHHHHHHHHHHhc---CCCEEEE
Confidence 42 233456666666666655 8998864
No 166
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.73 E-value=30 Score=34.60 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=28.4
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 146 ~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~i 181 (264)
T PRK03501 146 TFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQV 181 (264)
T ss_pred EEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEE
Confidence 4578999999999999999998 4788898888
No 167
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=45.69 E-value=75 Score=30.71 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=46.0
Q ss_pred CCCeEEEEec-----CCCCCC-HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCc-eEEEe
Q 012335 8 SPKTKIVCTL-----GPASRS-VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGIL-CAVML 72 (466)
Q Consensus 8 ~r~tkIi~Ti-----Gp~~~~-~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~-i~i~~ 72 (466)
..++|||++- .|+..+ .+.+++|.+.|.|+.||-..--+.++..++++..+++.+....| +++-+
T Consensus 116 ~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~i~~~M 187 (228)
T TIGR01093 116 KGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPLITMSM 187 (228)
T ss_pred HCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 4579999998 233222 35778899999999999988777788888887777665444455 33433
No 168
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=45.50 E-value=1.5e+02 Score=29.49 Aligned_cols=90 Identities=11% Similarity=-0.039 Sum_probs=52.4
Q ss_pred hccCcCCCcEEEEc------CCCChhhHHHHHH-HHHhcCCCceEEEeecC---HHHHhcHHHHHhc-CCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALS------FVRKGSDLVEVRN-LLRVHAKNILLMSKVEN---LEGVANFDDVLAN-SDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~s------fV~sa~dv~~~r~-~l~~~~~~~~IiaKIE~---~~av~nideI~~~-sDgImiaRgDLg 257 (466)
+|..+.|+|+|++. +--|.++-.++-+ ..+..+ .|++-+-+ .++++-...--+. +|++|+.+-.+-
T Consensus 27 ~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~---~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~ 103 (279)
T cd00953 27 ENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD---KVIFQVGSLNLEESIELARAAKSFGIYAIASLPPYYF 103 (279)
T ss_pred HHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC---CEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCC
Confidence 67788999999873 3344444444433 333333 27887753 3333333333333 699999765543
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 258 MEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 258 ~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
...+.+.+....+.+.+ ..|+++-
T Consensus 104 ~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 104 PGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred CCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 22234566666666666 6898864
No 169
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=45.37 E-value=1.1e+02 Score=27.40 Aligned_cols=95 Identities=13% Similarity=0.044 Sum_probs=53.8
Q ss_pred hccCcCCCcEEEEcCCCC------hhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEEeCCcccCcCC
Q 012335 189 NWGVPNKIDMIALSFVRK------GSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMVARGDLGMEIP 261 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~s------a~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImiaRgDLg~e~~ 261 (466)
+++.+.|+|+|.+..-.. .+.++.+++.+ .+..++.++.......... ..+. +|.+.+..+.-+-...
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~~ 152 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGGR 152 (200)
T ss_pred HHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCCc
Confidence 466789999999987763 33444444433 3688999986654432211 1222 6999988765543222
Q ss_pred chhHHHHHHHHHHHHHHcCCCeEEeehh
Q 012335 262 IEKIFLAQKVMIHKANIQGKPVVTATQM 289 (466)
Q Consensus 262 ~e~v~~~qk~ii~~~~~~gkPvi~ATqm 289 (466)
... +.....+.......++|++.+.-+
T Consensus 153 ~~~-~~~~~~~~~~~~~~~~pi~~~GGi 179 (200)
T cd04722 153 DAV-PIADLLLILAKRGSKVPVIAGGGI 179 (200)
T ss_pred cCc-hhHHHHHHHHHhcCCCCEEEECCC
Confidence 111 111122223334578999987754
No 170
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=45.23 E-value=34 Score=35.11 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=39.3
Q ss_pred hccCcCCCcEEEEcCCCCh-------h--------hHHHHHHHHHhcCCCceEEEe--ecCHHHHhcHHHHHhcCCeeEE
Q 012335 189 NWGVPNKIDMIALSFVRKG-------S--------DLVEVRNLLRVHAKNILLMSK--VENLEGVANFDDVLANSDAFMV 251 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa-------~--------dv~~~r~~l~~~~~~~~IiaK--IE~~~av~nideI~~~sDgImi 251 (466)
+.+.+.|+|.|.+. -|++ . +...++++-... .+++||+- |.+. +.+.+.++-+|||||
T Consensus 148 ~~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~-~~ipVi~NGdI~s~---~da~~~l~g~dgVMi 222 (318)
T TIGR00742 148 EIVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLKKDF-PHLTIEINGGIKNS---EQIKQHLSHVDGVMV 222 (318)
T ss_pred HHHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHHHhC-CCCcEEEECCcCCH---HHHHHHHhCCCEEEE
Confidence 55678999998665 4553 1 344444433221 25777652 3333 334445556999999
Q ss_pred eCCcccC
Q 012335 252 ARGDLGM 258 (466)
Q Consensus 252 aRgDLg~ 258 (466)
|||=|+-
T Consensus 223 gRgal~n 229 (318)
T TIGR00742 223 GREAYEN 229 (318)
T ss_pred CHHHHhC
Confidence 9999874
No 171
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=45.21 E-value=91 Score=32.26 Aligned_cols=67 Identities=10% Similarity=0.223 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
-+..+++.|.+.+.++.|-+-.+... -+|++++++-.|.|+.+-.++ .....+-..|.++|+|.|.+
T Consensus 81 Ka~aa~~~l~~inp~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~~----------~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 81 KAIAAKEHLRKINSEVEIVPVVTDVT-VEELEELVKEVDLIIDATDNF----------DTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 35666777888888888776655432 358889988899888875433 34455778999999998875
No 172
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=45.19 E-value=1.7e+02 Score=33.50 Aligned_cols=45 Identities=7% Similarity=-0.068 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEE
Q 012335 335 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSV 379 (466)
Q Consensus 335 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv 379 (466)
-+..+...+..|.+.+.+.+|+-|.+|+++..+|.+ +-..+...+
T Consensus 363 KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~Gl~c~Iv 409 (695)
T PRK13802 363 KINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIY 409 (695)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence 355667777788888888788888999987765543 334565555
No 173
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=45.16 E-value=54 Score=32.04 Aligned_cols=62 Identities=18% Similarity=0.354 Sum_probs=38.7
Q ss_pred HHHhccCcCCCcEEEEcCCCC--hhhHHHHHHHHHhcCCCceEEE--eecCHHHHhcHHHHHhc-CCeeEEeCC
Q 012335 186 DILNWGVPNKIDMIALSFVRK--GSDLVEVRNLLRVHAKNILLMS--KVENLEGVANFDDVLAN-SDAFMVARG 254 (466)
Q Consensus 186 di~~~~~~~~~d~v~~sfV~s--a~dv~~~r~~l~~~~~~~~Iia--KIE~~~av~nideI~~~-sDgImiaRg 254 (466)
.+.+...+.|+|+|.++--.. ..|...++++- .+++||+ -|.+.+- ..+.+.. +|+||||||
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~ed---a~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIES---AKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHHH---HHHHHHcCCCEEEEcCC
Confidence 333566789999887753332 34666666642 3577776 3555433 3344444 899999999
No 174
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=45.06 E-value=71 Score=26.28 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=30.4
Q ss_pred chhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEe
Q 012335 117 YKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVL 161 (466)
Q Consensus 117 ~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l 161 (466)
..++.+.+++||.|..-.|-. -+|.+++ ++.+..++..|..+
T Consensus 31 ~~~m~~~L~~Gd~VvT~gGi~-G~V~~i~--d~~v~vei~~g~~i 72 (84)
T TIGR00739 31 HKKLIESLKKGDKVLTIGGII-GTVTKIA--ENTIVIELNDNTEI 72 (84)
T ss_pred HHHHHHhCCCCCEEEECCCeE-EEEEEEe--CCEEEEEECCCeEE
Confidence 357788999999999998865 5677775 56776666555554
No 175
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=44.90 E-value=54 Score=28.48 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCcEEEEEcCCch------HHHHHHhcCCCCCEEEE
Q 012335 340 SSAVRTANCIKAALILVLTRGGT------TAKMVSKYRPSMPILSV 379 (466)
Q Consensus 340 ~~av~~a~~~~a~~Ivv~T~sG~------ta~~vSk~RP~~PIiAv 379 (466)
...++.|++.++++||+-|+.+. +|..+.+ +.+|||+.+
T Consensus 93 ~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~~-~a~~pVLvv 137 (144)
T PRK15118 93 QVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLIN-TVHVDMLIV 137 (144)
T ss_pred HHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHHh-hCCCCEEEe
Confidence 34455788999999999888432 3344444 445999998
No 176
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=44.68 E-value=64 Score=33.94 Aligned_cols=96 Identities=13% Similarity=0.147 Sum_probs=58.6
Q ss_pred HHHHHhccCcCCCcEEEEcCCC------ChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc----CCeeEEeC
Q 012335 184 KEDILNWGVPNKIDMIALSFVR------KGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN----SDAFMVAR 253 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~------sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~----sDgImiaR 253 (466)
.+|. +.+.+.|+|+|.+|-.- .+.++..+.++....+.++.||+- -||.+-.+|+++ +|++||||
T Consensus 239 ~eda-~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR 313 (367)
T TIGR02708 239 PEDA-DRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGR 313 (367)
T ss_pred HHHH-HHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcH
Confidence 3455 56688999999888532 233456666655545556777774 466666666665 79999999
Q ss_pred CcccC-----cCCchhHH-HHHHHHHHHHHHcCCCeE
Q 012335 254 GDLGM-----EIPIEKIF-LAQKVMIHKANIQGKPVV 284 (466)
Q Consensus 254 gDLg~-----e~~~e~v~-~~qk~ii~~~~~~gkPvi 284 (466)
-=|-. +-+.+++. ..+.++-......|..-+
T Consensus 314 ~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i 350 (367)
T TIGR02708 314 PVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTI 350 (367)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 74421 22233333 455566666666665543
No 177
>PLN02591 tryptophan synthase
Probab=44.62 E-value=1.2e+02 Score=30.02 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=72.0
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEE--eCCcccCcCCchhHH
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMV--ARGDLGMEIPIEKIF 266 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImi--aRgDLg~e~~~e~v~ 266 (466)
+.+.+.|+|++.++=.- .++..++++.+.+.| +..|.-+=--..-+.+..|++.++|.+= +| .|+.=.-..++
T Consensus 100 ~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~g--l~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~~~~~ 174 (250)
T PLN02591 100 ATIKEAGVHGLVVPDLP-LEETEALRAEAAKNG--IELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGARASVS 174 (250)
T ss_pred HHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcC--CeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCCcCCc
Confidence 55678999999998654 477777777777765 4444444111224578899999876653 33 33322223445
Q ss_pred HHHHHHHHHHHH-cCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-hhhhc
Q 012335 267 LAQKVMIHKANI-QGKPVVTATQMLESMIKSPRPTRAEATDVANA-AENFI 315 (466)
Q Consensus 267 ~~qk~ii~~~~~-~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-aE~~~ 315 (466)
.-.+..++.+++ .++|+++-.- .=|++.+..+... |.-.+
T Consensus 175 ~~~~~~i~~vk~~~~~Pv~vGFG---------I~~~e~v~~~~~~GADGvI 216 (250)
T PLN02591 175 GRVESLLQELKEVTDKPVAVGFG---------ISKPEHAKQIAGWGADGVI 216 (250)
T ss_pred hhHHHHHHHHHhcCCCceEEeCC---------CCCHHHHHHHHhcCCCEEE
Confidence 566777777776 4899988654 5667777777666 54443
No 178
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=44.58 E-value=35 Score=37.06 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=38.6
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 13 IVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 13 Ii~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
+=+-+|.+-...+.++.|+++|+++.=+..+||-.+...++++.||+
T Consensus 216 Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~ 262 (475)
T TIGR01303 216 IGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA 262 (475)
T ss_pred ehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 33445666677899999999999999999999998887777777775
No 179
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=44.52 E-value=96 Score=31.00 Aligned_cols=95 Identities=15% Similarity=0.366 Sum_probs=61.7
Q ss_pred HHHHhccCcCCCcEEEE-cCCC-----------ChhhHHHHHHHHHhcCCCceEEEeecCHHHH----hcHHHHHhc---
Q 012335 185 EDILNWGVPNKIDMIAL-SFVR-----------KGSDLVEVRNLLRVHAKNILLMSKVENLEGV----ANFDDVLAN--- 245 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~-sfV~-----------sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av----~nideI~~~--- 245 (466)
+.+ ..|...|+|||-+ .|+. .+.++.+.|+.|+ .+++|++-|--+.+. ..++|++..
T Consensus 93 aal-~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~---~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~ 168 (257)
T TIGR00259 93 AAL-AIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG---SEVKILADIVVKHAVHLGNRDLESIALDTVE 168 (257)
T ss_pred HHH-HHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC---CCcEEEeceeecccCcCCCCCHHHHHHHHHH
Confidence 455 5677799999988 5542 3455556666554 579999988555444 467777762
Q ss_pred ---CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehh
Q 012335 246 ---SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQM 289 (466)
Q Consensus 246 ---sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqm 289 (466)
+|||+|.=--=|.+..++.+..+.+ ..-..|+++++-+
T Consensus 169 ~~~aDavivtG~~TG~~~d~~~l~~vr~------~~~~~PvllggGv 209 (257)
T TIGR00259 169 RGLADAVILSGKTTGTEVDLELLKLAKE------TVKDTPVLAGSGV 209 (257)
T ss_pred hcCCCEEEECcCCCCCCCCHHHHHHHHh------ccCCCeEEEECCC
Confidence 6999998555555555655443221 1235799999864
No 180
>PRK08197 threonine synthase; Validated
Probab=44.30 E-value=1.6e+02 Score=30.91 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEE
Q 012335 335 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSV 379 (466)
Q Consensus 335 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv 379 (466)
-+..+..++..|.+.+.+.|++.| ||+++..+|.| +-..|...+
T Consensus 111 KdRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~aa~~G~~~~v~ 156 (394)
T PRK08197 111 KARGLAVGVSRAKELGVKHLAMPT-NGNAGAAWAAYAARAGIRATIF 156 (394)
T ss_pred HHhHHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEE
Confidence 344555566666777777766655 78887766554 345666666
No 181
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=44.28 E-value=91 Score=30.68 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=62.3
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecC--HHH--------HhcHHHHHhc-
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVEN--LEG--------VANFDDVLAN- 245 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~--~~a--------v~nideI~~~- 245 (466)
|..+..|.+.+.+.+.+.|+|.|+++ +--+...+.. .+.+++++.++++ +.+ +..+++.++.
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~----p~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLH----KGIVRRGHRG---YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeC----cchhhhcccc---cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 44466777766578889999999997 3333333322 2346778889843 221 1346666665
Q ss_pred CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
+|+|-+- -..+- .+..+....-+++.+.|+++|.|+++
T Consensus 104 a~~v~~~-~~~g~-~~~~~~~~~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 104 ADAVSIH-VNVGS-DTEWEQIRDLGMIAEICDDWGVPLLA 141 (258)
T ss_pred CCEEEEE-EecCC-chHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 6765542 11221 12234446678899999999999987
No 182
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.13 E-value=35 Score=34.47 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=47.8
Q ss_pred HHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHH--hcHHHHHhc-CCeeEEeC
Q 012335 184 KEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGV--ANFDDVLAN-SDAFMVAR 253 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av--~nideI~~~-sDgImiaR 253 (466)
.+++ ..+++.|+|.|.+=.. +++++.++.+.+...+.+.. .+||---|+ +|+.++++. .|.|-++.
T Consensus 192 leea-~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~--~~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 192 LEDA-LKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRER--VKIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred HHHH-HHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCC--EEEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 4455 5678999999999876 79999999998877662222 235544454 678888887 79998863
No 183
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=43.85 E-value=86 Score=32.57 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 207 GSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 207 a~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
.+.++.++++..+. .+.+++-+-+++.++-+. +.+|.+-||-+++- +..+++.+-+.||||++.
T Consensus 143 ~~gL~~L~~~~~~~--Gl~v~tev~d~~~~~~l~---~~vd~lqIgAr~~~-----------N~~LL~~va~~~kPViLk 206 (335)
T PRK08673 143 EEGLKLLAEAREET--GLPIVTEVMDPRDVELVA---EYVDILQIGARNMQ-----------NFDLLKEVGKTNKPVLLK 206 (335)
T ss_pred HHHHHHHHHHHHHc--CCcEEEeeCCHHHHHHHH---HhCCeEEECccccc-----------CHHHHHHHHcCCCcEEEe
Confidence 44566667766654 588999888877766555 45899999977763 345677777899999999
Q ss_pred ehhhHhhhcCCCCCHHHHHhHHHhhhh
Q 012335 287 TQMLESMIKSPRPTRAEATDVANAAEN 313 (466)
Q Consensus 287 TqmLeSM~~~p~PTRAEvsDv~naaE~ 313 (466)
|.|.-+ +.|+-+|+|.
T Consensus 207 ~G~~~t-----------i~E~l~A~e~ 222 (335)
T PRK08673 207 RGMSAT-----------IEEWLMAAEY 222 (335)
T ss_pred CCCCCC-----------HHHHHHHHHH
Confidence 887644 3467777664
No 184
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=43.62 E-value=63 Score=25.34 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=42.9
Q ss_pred CcEEecCCCEEEEEeCCCCCCCccE-EeecchhhhhccCCCCEEEEeCCeEEEEEEEEec-CCCeEEEEEeeC
Q 012335 88 KPIQLVQGQEITISTDYSLKGDEKM-ISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAK-ELGLVRCRCENS 158 (466)
Q Consensus 88 ~~i~l~~G~~v~l~~~~~~~~~~~~-i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~-~~~~i~~~v~~g 158 (466)
..+.++.|+.++|..........+. +..+...+.. ...-.+..+++.-.|.+..+.. +.+...|.+.+.
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS--SQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES--SSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceee--eeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 4589999999999886321122233 3334222222 3344566667889999877754 345688998875
No 185
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=43.58 E-value=2.3e+02 Score=28.26 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=76.0
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCc-hhHHH
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPI-EKIFL 267 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~-e~v~~ 267 (466)
+.+.+.|+|++.+|=.- .++-.++++.+.+.| +.+|.-|=-...-+.+..|.+.++|.+=.-+=.|+ .|. ..++.
T Consensus 109 ~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~~~ 184 (259)
T PF00290_consen 109 KEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTELPD 184 (259)
T ss_dssp HHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSCHH
T ss_pred HHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccchH
Confidence 44567899999998765 466678888887765 44444443435567899999999887755444554 222 35566
Q ss_pred HHHHHHHHHHHc-CCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhhhhccchhhHHHH
Q 012335 268 AQKVMIHKANIQ-GKPVVTATQMLESMIKSPRPTRAEATDVANAAENFINYGDLFKKI 324 (466)
Q Consensus 268 ~qk~ii~~~~~~-gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE~~~~~~~~~~~~ 324 (466)
-.+..++..+++ .+|+.+-= .+-|++.+..+..-|.-.+--..+.+.+
T Consensus 185 ~l~~~i~~ik~~~~~Pv~vGF---------GI~~~e~~~~~~~~aDGvIVGSa~v~~i 233 (259)
T PF00290_consen 185 ELKEFIKRIKKHTDLPVAVGF---------GISTPEQAKKLAAGADGVIVGSAFVKII 233 (259)
T ss_dssp HHHHHHHHHHHTTSS-EEEES---------SS-SHHHHHHHHTTSSEEEESHHHHHHH
T ss_pred HHHHHHHHHHhhcCcceEEec---------CCCCHHHHHHHHccCCEEEECHHHHHHH
Confidence 667778888776 58988754 3667777777764444443333333333
No 186
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=43.34 E-value=1.2e+02 Score=29.20 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=55.0
Q ss_pred HHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEE--EeecCHHHHhcHHHHHhcCCeeEEeCCc-----c
Q 012335 184 KEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLM--SKVENLEGVANFDDVLANSDAFMVARGD-----L 256 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~Ii--aKIE~~~av~nideI~~~sDgImiaRgD-----L 256 (466)
.+.+.+.+.+.++|+|-+-.-++.+.+..+|+.. + .+|| ..+.....+.++.+....+|.+++.-+. =
T Consensus 66 ~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~~---~--~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGt 140 (210)
T PRK01222 66 DEEIDEIVETVPLDLLQLHGDETPEFCRQLKRRY---G--LPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGT 140 (210)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc---C--CcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCC
Confidence 3344344567899999998888888888887643 2 3343 3444443455555555568999997532 1
Q ss_pred cCcCCchhHHHHHHHHHHHHHHcCCCeEEeehh
Q 012335 257 GMEIPIEKIFLAQKVMIHKANIQGKPVVTATQM 289 (466)
Q Consensus 257 g~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqm 289 (466)
|..+++..+. +...+|+++|.-+
T Consensus 141 G~~~dw~~l~----------~~~~~p~~LAGGi 163 (210)
T PRK01222 141 GKTFDWSLLP----------AGLAKPWILAGGL 163 (210)
T ss_pred CCccchHHhh----------hccCCCEEEECCC
Confidence 2333333221 1237899999854
No 187
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=43.20 E-value=1.1e+02 Score=31.81 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
++.+++.|.+.+..+.|-+--+... -+|..++++-.|.|+-+-.++ ..+..+-+.|+++++|++.+
T Consensus 84 a~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~~----------~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 84 AESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDNF----------DTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 5556778888888888776444433 257788888899888774432 34456788999999998876
No 188
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=43.19 E-value=39 Score=33.76 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=42.5
Q ss_pred HHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHH--HhcHHHHHhc-CCeeEEe
Q 012335 184 KEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEG--VANFDDVLAN-SDAFMVA 252 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~a--v~nideI~~~-sDgImia 252 (466)
.+++ ..+.+.|+|+|.+.-+ +++++.++.+++... .+++|.| --| .+|+.+++++ +|+|-++
T Consensus 191 ~eea-~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~i~a----sGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 191 LEEA-EEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVLLEA----SGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred HHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeEEEE----ECCCCHHHHHHHHHcCCCEEEEc
Confidence 3455 4567899999999775 557888777766543 3444333 233 4789999888 8999874
No 189
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.00 E-value=61 Score=32.64 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHH--HhcHHHHHhc-CCeeEEeC
Q 012335 184 KEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEG--VANFDDVLAN-SDAFMVAR 253 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~a--v~nideI~~~-sDgImiaR 253 (466)
.+.. ..+++.|+|+|.+--. +.+++.++.+.+.....++.+.| --+ .+|+.++++. +|.|-+|.
T Consensus 192 leea-~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieA----sGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 192 LEEA-KNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEA----SGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred HHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEE----ECCCCHHHHHHHHHcCCCEEEeCh
Confidence 3455 5678999999998764 67777777666543334544444 223 3577777777 79999873
No 190
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=42.85 E-value=1.5e+02 Score=31.02 Aligned_cols=115 Identities=19% Similarity=0.118 Sum_probs=0.0
Q ss_pred eEec-CCCccccCCcc--------cCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEe
Q 012335 159 AVLG-ERKNVNLPGVI--------VDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSK 229 (466)
Q Consensus 159 G~l~-~~Kgvnlp~~~--------~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaK 229 (466)
|.|. ++|.+-+|-=+ +--|...-.|.+.+.+.+.+.|+|.|+++ .-.++.+......++.+|.|
T Consensus 59 g~l~~tGr~vilpvDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~~~~~~~iplIlk 131 (348)
T PRK09250 59 GRLAGTGYLSILPVDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVAST-------LGVLEAVARKYAHKIPFILK 131 (348)
T ss_pred cccCCCCCEEEEEcccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeC-------HHHHHhccccccCCCCEEEE
Q ss_pred ecCHHHH-----------hcHHHHHhc-CCeeEEeCCcccCcCCch---hHHHHHHHHHHHHHHcCCCeEE
Q 012335 230 VENLEGV-----------ANFDDVLAN-SDAFMVARGDLGMEIPIE---KIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 230 IE~~~av-----------~nideI~~~-sDgImiaRgDLg~e~~~e---~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
+-+...+ -..++-++. +|+|-+. +-+|-+ +...--.+++..|.+.|.|++.
T Consensus 132 ln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~t-----vy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 132 LNHNELLSYPNTYDQALTASVEDALRLGAVAVGAT-----IYFGSEESRRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred eCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEE-----EecCCHHHHHHHHHHHHHHHHHHHhCCCEEE
No 191
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=42.73 E-value=1.4e+02 Score=25.56 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHh--cCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 208 SDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLA--NSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 208 ~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~--~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
-=+..+++++.+.|-+..+.+ -++.++++.+. ..|.|+++ +++...++++-+.|...|+||.+
T Consensus 16 lla~k~k~~~~e~gi~~~i~a-----~~~~e~~~~~~~~~~DvIll~----------PQi~~~~~~i~~~~~~~~ipv~~ 80 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDA-----ITATEGEKAIAAAEYDLYLVS----------PQTKMYFKQFEEAGAKVGKPVVQ 80 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEE-----ecHHHHHHhhccCCCCEEEEC----------hHHHHHHHHHHHHhhhcCCCEEE
Confidence 446677888888776644443 35555666654 37988886 57788889999999999999885
Q ss_pred eehhhHhhhcCCCCCHHH
Q 012335 286 ATQMLESMIKSPRPTRAE 303 (466)
Q Consensus 286 ATqmLeSM~~~p~PTRAE 303 (466)
.+.+...|.|--+|
T Consensus 81 ----I~~~~Y~~~~~~~~ 94 (104)
T PRK09590 81 ----IPPQAYIPIPMGIE 94 (104)
T ss_pred ----eCHHHcCCCccCHH
Confidence 44455566665544
No 192
>PRK14852 hypothetical protein; Provisional
Probab=42.69 E-value=82 Score=37.36 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=50.5
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeeh
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQ 288 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATq 288 (466)
-+..+++.+.+.|..+.|.+--|.. .-+|++++++-.|.|+=+-..+. ..+...+...|++.|+|+|.++-
T Consensus 387 Kaevaa~~l~~INP~v~I~~~~~~I-~~en~~~fl~~~DiVVDa~D~~~--------~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 387 KLDVMTERALSVNPFLDIRSFPEGV-AAETIDAFLKDVDLLVDGIDFFA--------LDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCC-CHHHHHHHhhCCCEEEECCCCcc--------HHHHHHHHHHHHHcCCCEEEeec
Confidence 3555677787888777776654443 33789999998998875432221 13667888999999999998773
No 193
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=42.45 E-value=52 Score=34.93 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=59.8
Q ss_pred cHHHHHhccCcCCCcEEEEc-------CCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCc
Q 012335 183 DKEDILNWGVPNKIDMIALS-------FVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGD 255 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~s-------fV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgD 255 (466)
|--.+ .+..+.|+..|... -|-+.++|.+.|+.+.+.|-...+ ||+. ...+.|..+.+
T Consensus 12 d~v~l-~~irQ~G~~giV~al~~~p~gevW~~~~i~~~k~~ie~~GL~~~v---vEs~----------pv~e~Ik~g~~- 76 (394)
T TIGR00695 12 DPVSL-EDVRQAGATGIVTALHHIPNGEVWEKEEIRKRKEYIESAGLHWSV---VESV----------PVHEAIKTGTG- 76 (394)
T ss_pred CcchH-HHHhhcCCcceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEE---EeCC----------CccHHHHcCCC-
Confidence 33444 45566899988733 367889999999999998854444 5662 22345555543
Q ss_pred ccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 256 LGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 256 Lg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
+.++--...|+.|+.+-++|.||++--
T Consensus 77 -----~rd~~Ienyk~~irNla~~GI~vicYN 103 (394)
T TIGR00695 77 -----NYGRWIENYKQTLRNLAQCGIKTVCYN 103 (394)
T ss_pred -----cHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 346677788999999999999999754
No 194
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=42.25 E-value=60 Score=27.30 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcC---------CchHHHHHHhcCCCCCEEEE
Q 012335 337 SLASSAVRTANCIKAALILVLTR---------GGTTAKMVSKYRPSMPILSV 379 (466)
Q Consensus 337 ~ia~~av~~a~~~~a~~Ivv~T~---------sG~ta~~vSk~RP~~PIiAv 379 (466)
.++...++.+.+.+++.||+-++ -|+++..+.++-|+|||+.+
T Consensus 72 ~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 72 DVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 35666677789999999998875 26778888888889999876
No 195
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=42.18 E-value=1.4e+02 Score=26.19 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-++.+++.+.+.+.++.+-+.-+.... .+..+.+.-.|-|+.+-.+ +..+..+.+.|+++++|+|.+.
T Consensus 54 Ka~~~~~~l~~~~p~v~i~~~~~~~~~-~~~~~~~~~~diVi~~~d~----------~~~~~~l~~~~~~~~i~~i~~~ 121 (143)
T cd01483 54 KAEVAARRLNELNPGVNVTAVPEGISE-DNLDDFLDGVDLVIDAIDN----------IAVRRALNRACKELGIPVIDAG 121 (143)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEc
Confidence 356667778777766666554433222 2335666667877766333 3578899999999999988753
No 196
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=42.16 E-value=70 Score=32.51 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=40.9
Q ss_pred CHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCce
Q 012335 23 SVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILC 68 (466)
Q Consensus 23 ~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i 68 (466)
+.+.+++.+++|.+..=|..||.+.++..+.-+.+++.+..+|.++
T Consensus 88 ~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 88 HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 6889999999999999999999999998888888888888777665
No 197
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=42.13 E-value=6.8 Score=41.10 Aligned_cols=136 Identities=24% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCCh---------hh--------HHHHHHHHHhcC--CCceEEEee
Q 012335 170 PGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKG---------SD--------LVEVRNLLRVHA--KNILLMSKV 230 (466)
Q Consensus 170 p~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa---------~d--------v~~~r~~l~~~~--~~~~IiaKI 230 (466)
|++++.+..-.....+++...+.+.|+|+|.++=-.-. ++ +.++.++|...| .++.+++
T Consensus 202 ~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~-- 279 (368)
T PF01645_consen 202 PGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIA-- 279 (368)
T ss_dssp TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEE--
T ss_pred CCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEE--
Q ss_pred cCHHHHhcHHHHHhc----CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHh
Q 012335 231 ENLEGVANFDDVLAN----SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATD 306 (466)
Q Consensus 231 E~~~av~nideI~~~----sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsD 306 (466)
--++.+-++++.+ +|++-+||+=|-.-=.. ...+|+....|+.+||| .|...+--|
T Consensus 280 --sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~---------~~~~C~~~~CP~Giatq---------~~~l~~~l~ 339 (368)
T PF01645_consen 280 --SGGLRTGDDVAKALALGADAVYIGTAALIALGCI---------QCRKCHTGTCPVGIATQ---------DPKLRKRLD 339 (368)
T ss_dssp --ESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT-----------S---CCCT--TTSSS------------CCHH--CT
T ss_pred --eCCccCHHHHHHHHhcCCCeeEecchhhhhcchH---------HHhcccCCCCCceeeec---------Ccccccccc
Q ss_pred HHHhhhhhccchhhHHHHHhh
Q 012335 307 VANAAENFINYGDLFKKIMET 327 (466)
Q Consensus 307 v~naaE~~~~~~~~~~~~~~~ 327 (466)
+--++|...+|...+.+-...
T Consensus 340 ~~~~~~~v~n~~~~~~~el~~ 360 (368)
T PF01645_consen 340 VEEKAERVANFLKACAEELRE 360 (368)
T ss_dssp ----HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHH
No 198
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=42.01 E-value=42 Score=33.70 Aligned_cols=87 Identities=13% Similarity=0.114 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHh-cCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLA-NSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~-~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-++.+++.+.+.+.+..|.+- +..---+|+++++. -.|.|+-+-+++ .....+.+.|+++++|+|.+.
T Consensus 85 Kve~~~~rl~~INP~~~V~~i-~~~i~~e~~~~ll~~~~D~VIdaiD~~----------~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVV-DDFITPDNVAEYMSAGFSYVIDAIDSV----------RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEE-ecccChhhHHHHhcCCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEEC
Confidence 456667777777777666543 32222357777775 368877764433 345578999999999999774
Q ss_pred hhhHhhhcCCCCCHHHHHhHHHh
Q 012335 288 QMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 288 qmLeSM~~~p~PTRAEvsDv~na 310 (466)
-.- ..--||+=+++|+...
T Consensus 154 Gag----~k~dp~~~~~~di~~t 172 (268)
T PRK15116 154 GAG----GQIDPTQIQVVDLAKT 172 (268)
T ss_pred Ccc----cCCCCCeEEEEeeecc
Confidence 332 4558999999998765
No 199
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=41.84 E-value=2.2e+02 Score=27.01 Aligned_cols=102 Identities=14% Similarity=0.194 Sum_probs=56.2
Q ss_pred cHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeec-------CHHHHhcHHHHHhcCCeeEEeCCc
Q 012335 183 DKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVE-------NLEGVANFDDVLANSDAFMVARGD 255 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE-------~~~av~nideI~~~sDgImiaRgD 255 (466)
|.+.+.+...+.|++.++++- .+..+...+.+.....+ ++....=|= ..+-++.+++.+.......| |.
T Consensus 16 ~~~~~~~~~~~~Gv~~~v~~~-~~~~~~~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~i--GE 91 (252)
T TIGR00010 16 DVEEVIERAKAAGVTAVVAVG-TDLEDFLRALELAEKYP-NVYAAVGVHPLDVDDDTKEDIKELERLAAHPKVVAI--GE 91 (252)
T ss_pred CHHHHHHHHHHcCCCEEEEec-CCHHHHHHHHHHHHHCC-CEEEEEEeCcchhhcCCHHHHHHHHHHccCCCEEEE--Ee
Confidence 344443455678999887543 33577777777776554 444333331 12223344444332223334 66
Q ss_pred ccCcCCc--hh---HHHHHHHHHHHHHHcCCCeEEeeh
Q 012335 256 LGMEIPI--EK---IFLAQKVMIHKANIQGKPVVTATQ 288 (466)
Q Consensus 256 Lg~e~~~--e~---v~~~qk~ii~~~~~~gkPvi~ATq 288 (466)
.|.+... .. =..+-+.+++.|++.|+||.+-|.
T Consensus 92 iGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~ 129 (252)
T TIGR00010 92 TGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHAR 129 (252)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 7666532 11 113335566778999999998774
No 200
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=41.71 E-value=42 Score=32.81 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=49.7
Q ss_pred hccCcCCCcEEEEcCCC-----ChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-------CCeeEEeCCcc
Q 012335 189 NWGVPNKIDMIALSFVR-----KGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-------SDAFMVARGDL 256 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~-----sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-------sDgImiaRgDL 256 (466)
+...+.|++.+.+--+. +.-|...++++... .++++|+- -++.+.+++.+. +||+|+||+=+
T Consensus 153 ~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~--~~ipvias----GGi~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 153 ERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR--TDAPVVAS----GGVSSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred HHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh--CCCCEEEe----CCCCCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 44568999988776543 23466666666544 25777772 356666665542 79999999998
Q ss_pred cCcCCchhHHHH
Q 012335 257 GMEIPIEKIFLA 268 (466)
Q Consensus 257 g~e~~~e~v~~~ 268 (466)
.-.+++++.-..
T Consensus 227 ~g~~~~~~~~~~ 238 (241)
T PRK14024 227 AGAFTLPEALAV 238 (241)
T ss_pred cCCCCHHHHHHH
Confidence 888888875443
No 201
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=41.57 E-value=56 Score=31.98 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-++.+++.|.+.+.++.|.+.-+... -+|+++++.. .|.|+.+=.+ +.....+.+.|++.++|+|.+.
T Consensus 66 Kae~~~~~l~~inP~~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD~----------~~~k~~L~~~c~~~~ip~I~s~ 134 (231)
T cd00755 66 KVEVMAERIRDINPECEVDAVEEFLT-PDNSEDLLGGDPDFVVDAIDS----------IRAKVALIAYCRKRKIPVISSM 134 (231)
T ss_pred HHHHHHHHHHHHCCCcEEEEeeeecC-HhHHHHHhcCCCCEEEEcCCC----------HHHHHHHHHHHHHhCCCEEEEe
Confidence 35666777888887777665544332 2577888753 6877776322 2345678999999999999763
Q ss_pred hhhHhhhcCCCCCHHHHHhHHHh
Q 012335 288 QMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 288 qmLeSM~~~p~PTRAEvsDv~na 310 (466)
- .-..--||+=++.|+...
T Consensus 135 g----~g~~~dp~~i~i~di~~t 153 (231)
T cd00755 135 G----AGGKLDPTRIRVADISKT 153 (231)
T ss_pred C----CcCCCCCCeEEEccEecc
Confidence 2 223346888888877544
No 202
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=41.46 E-value=1.6e+02 Score=27.36 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=38.4
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeC
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVAR 253 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaR 253 (466)
+.+.+.|+|+|.++--.+. +..+..+.+...+ +.+..-+......+.+.++...+|.+.+..
T Consensus 74 ~~~~~~g~dgv~vh~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~ 135 (211)
T cd00429 74 EAFAKAGADIITFHAEATD-HLHRTIQLIKELG--MKAGVALNPGTPVEVLEPYLDEVDLVLVMS 135 (211)
T ss_pred HHHHHcCCCEEEECccchh-hHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHhhCCEEEEEE
Confidence 4556899999988876663 3334444444443 444444433234666777777789887764
No 203
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=41.36 E-value=1.6e+02 Score=28.07 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=50.1
Q ss_pred HHHHhccCcCCCcEEEEc--CCCCh--hhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEEeCCcccCc
Q 012335 185 EDILNWGVPNKIDMIALS--FVRKG--SDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMVARGDLGME 259 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~s--fV~sa--~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImiaRgDLg~e 259 (466)
+.+ +.+.+.|+|+|.+. ...++ +++.++.+.+.+. ..+.+++-.-+.+-+ ...... +|.+.+..+++...
T Consensus 79 ~~v-~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~---~~a~~~G~d~i~~~~~g~t~~ 153 (221)
T PRK01130 79 KEV-DALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEEG---LAAQKLGFDFIGTTLSGYTEE 153 (221)
T ss_pred HHH-HHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHH---HHHHHcCCCEEEcCCceeecC
Confidence 455 56688999977653 33233 6777777777664 567788765443322 222222 58777754443221
Q ss_pred C--CchhHHHHHHHHHHHHHH-cCCCeEEeeh
Q 012335 260 I--PIEKIFLAQKVMIHKANI-QGKPVVTATQ 288 (466)
Q Consensus 260 ~--~~e~v~~~qk~ii~~~~~-~gkPvi~ATq 288 (466)
- ....-. ..+...++ .++|++.+..
T Consensus 154 ~~~~~~~~~----~~i~~i~~~~~iPvia~GG 181 (221)
T PRK01130 154 TKKPEEPDF----ALLKELLKAVGCPVIAEGR 181 (221)
T ss_pred CCCCCCcCH----HHHHHHHHhCCCCEEEECC
Confidence 1 111111 22222322 3799997664
No 204
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=41.20 E-value=1.5e+02 Score=29.00 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcC
Q 012335 335 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSS 414 (466)
Q Consensus 335 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~ 414 (466)
-.+||..|.++-..-+ .+|=.+|+|...++++-|..++-++ | ++...|..|.-.-++.-++..
T Consensus 80 K~~IA~~Aa~lI~~gd----~Ifld~GtT~~~l~~~L~~~~ltVv-------T------Ns~~ia~~l~~~~~~~vil~G 142 (240)
T PRK10411 80 KADIAREALAWIEEGM----VIALDASSTCWYLARQLPDINIQVF-------T------NSHPICQELGKRERIQLISSG 142 (240)
T ss_pred HHHHHHHHHHhCCCCC----EEEEcCcHHHHHHHHhhCCCCeEEE-------e------CCHHHHHHHhcCCCCEEEEEC
Confidence 3467777665554333 4555789999999999887777777 3 788888777766676655554
Q ss_pred C
Q 012335 415 G 415 (466)
Q Consensus 415 ~ 415 (466)
.
T Consensus 143 G 143 (240)
T PRK10411 143 G 143 (240)
T ss_pred C
Confidence 4
No 205
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=41.09 E-value=91 Score=28.91 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceE
Q 012335 24 VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCA 69 (466)
Q Consensus 24 ~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~ 69 (466)
.+.+++++++|++.+-|..-+.+..++.+.+..++...++++.++-
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 61 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFI 61 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 5678899999999999998888888888899999998887765533
No 206
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=41.07 E-value=1.1e+02 Score=28.73 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=51.9
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEE--EeecCHHHHhcHHHHHhcCCeeEEeCC---c---ccCcC
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLM--SKVENLEGVANFDDVLANSDAFMVARG---D---LGMEI 260 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~Ii--aKIE~~~av~nideI~~~sDgImiaRg---D---Lg~e~ 260 (466)
+.+.+.++|+|-+..-.+.+.+..+|+.+ + ..+| ..+-+....+.....-..+|.+++.-. + -|..+
T Consensus 67 ~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~---~--~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~ 141 (203)
T cd00405 67 EIAEELGLDVVQLHGDESPEYCAQLRARL---G--LPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTF 141 (203)
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHhhc---C--CcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceE
Confidence 45678999999999877777888887765 2 2333 444444333322233334799988642 2 13444
Q ss_pred CchhHHHHHHHHHHHHHHcCCCeEEeehh
Q 012335 261 PIEKIFLAQKVMIHKANIQGKPVVTATQM 289 (466)
Q Consensus 261 ~~e~v~~~qk~ii~~~~~~gkPvi~ATqm 289 (466)
+++.+..+. ..+|++.|.-+
T Consensus 142 ~~~~l~~~~---------~~~PvilaGGI 161 (203)
T cd00405 142 DWSLLRGLA---------SRKPVILAGGL 161 (203)
T ss_pred ChHHhhccc---------cCCCEEEECCC
Confidence 554433221 46899999854
No 207
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=40.86 E-value=95 Score=28.21 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHHHhccCcCCCcEEEEcCCC---------ChhhHHHHHHHHHhcCCCceEEE--eecCHHHHhcHHHHHhc-CCeeEEe
Q 012335 185 EDILNWGVPNKIDMIALSFVR---------KGSDLVEVRNLLRVHAKNILLMS--KVENLEGVANFDDVLAN-SDAFMVA 252 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~sfV~---------sa~dv~~~r~~l~~~~~~~~Iia--KIE~~~av~nideI~~~-sDgImia 252 (466)
.++ ..+.+.|+|+|.++-+. .......++++... .+++|++ -| + .+|+.++++. +||+.++
T Consensus 106 ~~~-~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pv~a~GGi-~---~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 106 EEA-LRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL--VEIPVVAIGGI-T---PENAAEVLAAGADGVAVI 178 (196)
T ss_pred HHH-HHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--CCCCEEEECCC-C---HHHHHHHHHcCCCEEEEe
Confidence 344 34577899999988552 33445555555433 2355554 34 2 2688888887 8999999
Q ss_pred CCcc
Q 012335 253 RGDL 256 (466)
Q Consensus 253 RgDL 256 (466)
++=+
T Consensus 179 ~~i~ 182 (196)
T cd00564 179 SAIT 182 (196)
T ss_pred hHhh
Confidence 7633
No 208
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=40.43 E-value=94 Score=29.04 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCc
Q 012335 24 VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGIL 67 (466)
Q Consensus 24 ~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~ 67 (466)
.+.+++++++|++.+.+.....+..++.+.+..+++..+.++.+
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVP 67 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 46788999999999999988877777777777777766665544
No 209
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.25 E-value=1.2e+02 Score=30.24 Aligned_cols=109 Identities=15% Similarity=0.179 Sum_probs=64.5
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeE--EeCCcccCcCCc-hhH
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFM--VARGDLGMEIPI-EKI 265 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgIm--iaRgDLg~e~~~-e~v 265 (466)
+.+.+.|+|++.+|=.. .++..++.+.+.+.| +..|.-+=....-+.+..|.+.++|.+ +++ .|+ .|. ...
T Consensus 111 ~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~g--l~~I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~~~~ 184 (258)
T PRK13111 111 ADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHG--LDLIFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGARSAD 184 (258)
T ss_pred HHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCcccCC
Confidence 55677899999988654 467777777777655 333332222222457888888888765 444 332 222 233
Q ss_pred HHHHHHHHHHHHHc-CCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhh
Q 012335 266 FLAQKVMIHKANIQ-GKPVVTATQMLESMIKSPRPTRAEATDVANAAE 312 (466)
Q Consensus 266 ~~~qk~ii~~~~~~-gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE 312 (466)
+.-....++.++++ ++|+++..- .=|+.++..+...|.
T Consensus 185 ~~~~~~~i~~vk~~~~~pv~vGfG---------I~~~e~v~~~~~~AD 223 (258)
T PRK13111 185 AADLAELVARLKAHTDLPVAVGFG---------ISTPEQAAAIAAVAD 223 (258)
T ss_pred CccHHHHHHHHHhcCCCcEEEEcc---------cCCHHHHHHHHHhCC
Confidence 34445566666654 889888654 445666666555443
No 210
>PRK00915 2-isopropylmalate synthase; Validated
Probab=40.22 E-value=5.4e+02 Score=28.25 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=79.3
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcC-CCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHh---cC--C--ee
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSF-VRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLA---NS--D--AF 249 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sf-V~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~---~s--D--gI 249 (466)
.+|..++..|.+...+.|+|.|=+.| .-++.|...++.+.. ...+..|.+-.-.. .+.+|..++ .+ + .+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~-~~~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~i 98 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIAR-TVKNSTVCGLARAV--KKDIDAAAEALKPAEAPRIHT 98 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHh-hCCCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEEE
Confidence 36777877776777789999998877 568888888877654 34566776655221 223444442 22 2 34
Q ss_pred EEeCCcccC----cCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhh
Q 012335 250 MVARGDLGM----EIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAA 311 (466)
Q Consensus 250 miaRgDLg~----e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naa 311 (466)
+++-.|+-+ ....+++...-.+.++.|+++|.-|.+..+ ...+-+...+.+++.++
T Consensus 99 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~~~ 158 (513)
T PRK00915 99 FIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVEAA 158 (513)
T ss_pred EECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHHHH
Confidence 454445422 234566777778999999999998876443 23344455566666663
No 211
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=40.21 E-value=65 Score=25.45 Aligned_cols=42 Identities=26% Similarity=0.465 Sum_probs=30.1
Q ss_pred CCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEE-eCCeEEE
Q 012335 94 QGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILC-SDGTISL 139 (466)
Q Consensus 94 ~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~i-ddG~i~l 139 (466)
+|+..+|-.+.. ...+.++-..|+..++.||.+.+ ++|.+.+
T Consensus 8 E~~~AVl~~~~~----~~~~~vp~~~LP~~~keGDvl~i~~~~~~~~ 50 (71)
T PF11213_consen 8 EGDYAVLELEDG----EKEIDVPRSRLPEGAKEGDVLEIGEDGSIEI 50 (71)
T ss_pred eCCEEEEEECCC----eEEEEEEHHHCCCCCCcccEEEECCCceEEE
Confidence 366666655321 14677888899999999999999 7776654
No 212
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=40.19 E-value=86 Score=31.50 Aligned_cols=58 Identities=16% Similarity=0.064 Sum_probs=38.0
Q ss_pred EecCCCCCCHHHHHHHHHhCCceEEEec-----------CCCCHHHHHHHHHHHHHHHHHcCCceEEEec
Q 012335 15 CTLGPASRSVEMAEKLLRAGMNVARFNF-----------SHGSHAYHQETLDNLRTAMNNTGILCAVMLD 73 (466)
Q Consensus 15 ~TiGp~~~~~~~l~~li~~G~~v~RiN~-----------shg~~~~~~~~i~~ir~~~~~~~~~i~i~~D 73 (466)
.|+ |=.-+++..++|.++|+|+.=.++ ..-+.++..+.++.+.+++.+.+.-+-+|+-
T Consensus 152 ~T~-~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~h 220 (268)
T PF09370_consen 152 FTT-AYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCH 220 (268)
T ss_dssp EE---EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEE
T ss_pred eee-eeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 344 445589999999999999998887 2335678888999999988877665544443
No 213
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=40.18 E-value=84 Score=28.00 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=37.0
Q ss_pred HhcHHHHHhc--CC--eeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 236 VANFDDVLAN--SD--AFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 236 v~nideI~~~--sD--gImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
++++++.+.. .| -|++|-.|+.-..+.+++..--+++++.+++.+.++++.+
T Consensus 53 ~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 53 LARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVG 108 (177)
T ss_pred HHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444444432 45 4556677776667788888888999999999999988865
No 214
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=39.80 E-value=90 Score=29.16 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=40.1
Q ss_pred HHHHhccCcCCCcEEEEcCCCCh---------hhHHHHHHHHHhcCCCceEEE--eecCHHHHhcHHHHHhc-CCeeEEe
Q 012335 185 EDILNWGVPNKIDMIALSFVRKG---------SDLVEVRNLLRVHAKNILLMS--KVENLEGVANFDDVLAN-SDAFMVA 252 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~sfV~sa---------~dv~~~r~~l~~~~~~~~Iia--KIE~~~av~nideI~~~-sDgImia 252 (466)
.++ ..+.+.|+|+|.++-+... ..+..++++.... .+++|+| -| + .+|+.++++. +||+.++
T Consensus 115 ~e~-~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~---~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 115 EEA-AAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-T---PENAPEVLEAGADGVAVV 188 (212)
T ss_pred HHH-HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-C---HHHHHHHHHcCCCEEEEe
Confidence 344 4557899999998644321 1144555443332 2245444 34 2 2688888887 8999999
Q ss_pred CCccc
Q 012335 253 RGDLG 257 (466)
Q Consensus 253 RgDLg 257 (466)
++=+.
T Consensus 189 s~i~~ 193 (212)
T PRK00043 189 SAITG 193 (212)
T ss_pred HHhhc
Confidence 76443
No 215
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=39.74 E-value=1.4e+02 Score=30.47 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=39.4
Q ss_pred CeEEEEecCCCCCCH----HHHHHHHHhCCceEEEecCCCC-----HHHHHHHHHHHHHHHHHcCCceEEEecC
Q 012335 10 KTKIVCTLGPASRSV----EMAEKLLRAGMNVARFNFSHGS-----HAYHQETLDNLRTAMNNTGILCAVMLDT 74 (466)
Q Consensus 10 ~tkIi~TiGp~~~~~----~~l~~li~~G~~v~RiN~shg~-----~~~~~~~i~~ir~~~~~~~~~i~i~~Dl 74 (466)
+....+|+|..+.++ +..+++.++|.+.+.+...|+. .+.-.+.++.+| +..|.-+.+++|.
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir---~~~g~~~~l~vDa 196 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVR---EAVGPDVDLMVDA 196 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHH---HhhCCCCEEEEEC
Confidence 455667776654233 3556678899999999999876 455445555555 4444445566665
No 216
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=39.69 E-value=1.5e+02 Score=24.88 Aligned_cols=70 Identities=7% Similarity=0.169 Sum_probs=44.5
Q ss_pred CcEEecCCCEEEEEeCC-CCCCCccEEeecchhhhhccCCCCEEEEe-CCeEEEEEEEEecCCCeEEEEEeeCe
Q 012335 88 KPIQLVQGQEITISTDY-SLKGDEKMISMSYKKLAEDLRPGSVILCS-DGTISLTVLDCAKELGLVRCRCENSA 159 (466)
Q Consensus 88 ~~i~l~~G~~v~l~~~~-~~~~~~~~i~v~~~~~~~~v~~Gd~i~id-dG~i~l~V~~v~~~~~~i~~~v~~gG 159 (466)
..+.+.+|+.+.|...- ...-.....|++.. ...+....++.++ ||.+.+.=.+....++...|.+.+.+
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~--~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD--LLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCC--CccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 45899999999999862 11122345566432 2334557788886 69888774444323335899988764
No 217
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=39.49 E-value=2e+02 Score=31.38 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=67.7
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcCCCC-hhhHHHHHHHHHhcCCCceEEE-eecCHHHHhcHHHHHhcCCeeEEeCCc
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSFVRK-GSDLVEVRNLLRVHAKNILLMS-KVENLEGVANFDDVLANSDAFMVARGD 255 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sfV~s-a~dv~~~r~~l~~~~~~~~Iia-KIE~~~av~nideI~~~sDgImiaRgD 255 (466)
..++.+.+.+ ...++.|+|.|++--... ...+.++-+.+++.-.+..||| -+-|.++..++.+ .=+|+|=||=|-
T Consensus 223 ~~~~~~~~~a-~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~ 299 (479)
T PRK07807 223 GINGDVAAKA-RALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGP 299 (479)
T ss_pred ccChhHHHHH-HHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccC
Confidence 3455566666 566889999988742221 2344444445555556789999 9999999888766 348998865333
Q ss_pred ---------ccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 256 ---------LGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 256 ---------Lg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
-|+ +.+. ..+-.++.+.|++.|+|||-...+=
T Consensus 300 gsictt~~~~~~--~~p~-~~av~~~~~~~~~~~~~via~ggi~ 340 (479)
T PRK07807 300 GAMCTTRMMTGV--GRPQ-FSAVLECAAAARELGAHVWADGGVR 340 (479)
T ss_pred CcccccccccCC--chhH-HHHHHHHHHHHHhcCCcEEecCCCC
Confidence 222 2222 2233556666777899999776543
No 218
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=39.27 E-value=2.1e+02 Score=26.63 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=40.5
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeC
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVAR 253 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaR 253 (466)
+.+.+.|+|+|.+.--.+ ++.....+.+...|....+. ++.....+.+.++...+|.+.+..
T Consensus 73 ~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~~~d~i~~~~ 134 (210)
T TIGR01163 73 EDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLPDVDLVLLMS 134 (210)
T ss_pred HHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHhhCCEEEEEE
Confidence 445689999988875443 44445555566656544443 444445777888887789988754
No 219
>PTZ00300 pyruvate kinase; Provisional
Probab=39.21 E-value=4.4e+02 Score=28.65 Aligned_cols=181 Identities=13% Similarity=0.154 Sum_probs=97.8
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcC--------------------------------CCceEE
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHA--------------------------------KNILLM 227 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~--------------------------------~~~~Ii 227 (466)
+.+|.+.+.+++-+.|-+...++.+++++-++.+.+++...+ ..+.|+
T Consensus 171 saeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ 250 (454)
T PTZ00300 171 SAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVIC 250 (454)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEE
Confidence 667777775554446668889999999999999988764210 112233
Q ss_pred ------EeecCH-----HHHhcHHHHHhcCCeeEEeCCcccC-cCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhc
Q 012335 228 ------SKVENL-----EGVANFDDVLANSDAFMVARGDLGM-EIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIK 295 (466)
Q Consensus 228 ------aKIE~~-----~av~nideI~~~sDgImiaRgDLg~-e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~ 295 (466)
++|+++ |.-+=...|+.-+|++|.. |+=+. .+| .+....+.+|+..+.+.-..- +.++....
T Consensus 251 ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS-~ETA~G~yP-~eaV~~m~~I~~~aE~~~~~~----~~~~~~~~ 324 (454)
T PTZ00300 251 ATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLS-GETAKGKYP-NEVVQYMARICLEAQSAVNEY----VFFNSIKK 324 (454)
T ss_pred ECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEe-chhcCCCCH-HHHHHHHHHHHHHHHhhhchh----hhhhhhhc
Confidence 244443 2233345666678999993 22111 122 244566788888777542111 22333211
Q ss_pred -CCCC-CHHHHHhHHHh-hhhhccchhhHHHHHhhCCCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCC
Q 012335 296 -SPRP-TRAEATDVANA-AENFINYGDLFKKIMETAPVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRP 372 (466)
Q Consensus 296 -~p~P-TRAEvsDv~na-aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP 372 (466)
.+.| +..| -++.+ .+.+..... +-+.. ...-..+|..+|+--....|+++|.+-++||.++=++-
T Consensus 325 ~~~~~~~~~~--~ia~sa~~~a~~l~a--~aIiv--------~T~sG~tA~~vs~~RP~~pIia~t~~~~~ar~l~l~~G 392 (454)
T PTZ00300 325 LQPIPMSAEE--AVCSSAVNSVYETKA--KALVV--------LSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQG 392 (454)
T ss_pred cccCCCChHH--HHHHHHHHHHHhCCC--CEEEE--------ECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccC
Confidence 1111 1122 13333 222211000 00000 00112345556665555569999999999999999998
Q ss_pred CCCEEE
Q 012335 373 SMPILS 378 (466)
Q Consensus 373 ~~PIiA 378 (466)
-.|++.
T Consensus 393 V~p~~~ 398 (454)
T PTZ00300 393 VESVFF 398 (454)
T ss_pred cEEEEe
Confidence 778754
No 220
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=39.17 E-value=1.5e+02 Score=31.87 Aligned_cols=67 Identities=12% Similarity=0.053 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHHH-hcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEGV-ANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~av-~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
.+.+.+.|.+.|.++.+-+-.|+++.+ .+.+++..-.|.|+.+ ++ + .....++.+.|+++++|+|.+
T Consensus 76 A~~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t--~~----~----~~~~~~L~~~c~~~~iPlI~~ 143 (425)
T cd01493 76 AEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIAT--NL----P----ESTLLRLADVLWSANIPLLYV 143 (425)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEEC--CC----C----HHHHHHHHHHHHHcCCCEEEE
Confidence 466778888899999999988888775 4457888888888754 21 2 123345889999999998854
No 221
>PRK08328 hypothetical protein; Provisional
Probab=38.78 E-value=1.4e+02 Score=28.96 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 211 VEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 211 ~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
..+++.+.+.+.++.|-+--+.. .-+|++++++-.|.|+-+-.+. ..+..+-+.|+++|+|+|.+
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~~----------~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 85 LSAKWKLERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDNF----------ETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred HHHHHHHHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 33456666777778777644443 3467888998889888763332 24455667899999998864
No 222
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=38.55 E-value=30 Score=35.20 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=36.7
Q ss_pred hccCcCCCcEEEEcCCCC-------hhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc--CCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALSFVRK-------GSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN--SDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~s-------a~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~--sDgImiaRgDLg 257 (466)
+...+.|+++|.+-- |+ ..|-..++++.... +++||+-=. ....+.+.++++. +||||||||=|+
T Consensus 145 ~~l~~~G~~~i~vH~-Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGd-I~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 145 RILEDAGVSAITVHG-RTRKQRYKGPADWEAIAEIKEAL--PIPVIANGD-IFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp HHHHHTT--EEEEEC-S-TTCCCTS---HHHHHHCHHC---TSEEEEESS---SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred HHhhhcccceEEEec-CchhhcCCcccchHHHHHHhhcc--cceeEEcCc-cCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 667889999997742 32 44555566555443 378887531 1222344445554 799999999876
No 223
>PF10930 DUF2737: Protein of unknown function (DUF2737); InterPro: IPR020295 The proteins in this entry are uncharacterised.
Probab=38.50 E-value=17 Score=27.18 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=20.6
Q ss_pred CCeEEeehhhHhhhcCCCCCHHHHH
Q 012335 281 KPVVTATQMLESMIKSPRPTRAEAT 305 (466)
Q Consensus 281 kPvi~ATqmLeSM~~~p~PTRAEvs 305 (466)
-|-|.-|.+.-++...|.|||.|.-
T Consensus 7 np~i~~~e~v~r~r~~PmPsREELl 31 (54)
T PF10930_consen 7 NPDILPTELVIRQRFKPMPSREELL 31 (54)
T ss_pred CcchhHHHHHHHhcCCCCCCHHHHH
Confidence 3566678888888999999999974
No 224
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=38.50 E-value=2.2e+02 Score=25.60 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=35.4
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHH---------HHHHHHHHHHH
Q 012335 13 IVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQ---------ETLDNLRTAMN 62 (466)
Q Consensus 13 Ii~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~---------~~i~~ir~~~~ 62 (466)
+..+.-+...+.+.+++|.++|.+.+.+++-|++.+.+. ++++.++.+.+
T Consensus 89 ~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (216)
T smart00729 89 ITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE 147 (216)
T ss_pred EEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 333333556789999999999999888888888877654 35555555543
No 225
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=38.11 E-value=67 Score=31.69 Aligned_cols=53 Identities=15% Similarity=0.250 Sum_probs=34.6
Q ss_pred eEEEeecCHHHHhcHHHHHhc-----CCeeEEeCCcccCcCCchhHHHHHHHHHHHHH-HcCCCeEE
Q 012335 225 LLMSKVENLEGVANFDDVLAN-----SDAFMVARGDLGMEIPIEKIFLAQKVMIHKAN-IQGKPVVT 285 (466)
Q Consensus 225 ~IiaKIE~~~av~nideI~~~-----sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~-~~gkPvi~ 285 (466)
.=+-||.=.+- ++.++|++. .|+|||| |-.|++. ..-.+.+++++ ..+.|+|.
T Consensus 17 ~H~tliDP~k~-~~~~ei~~~~~~~GTDaImIG-GS~gvt~------~~~~~~v~~ik~~~~lPvil 75 (240)
T COG1646 17 RHLTLIDPDKT-EEADEIAEAAAEAGTDAIMIG-GSDGVTE------ENVDNVVEAIKERTDLPVIL 75 (240)
T ss_pred eEEEEeCcccc-cccHHHHHHHHHcCCCEEEEC-CcccccH------HHHHHHHHHHHhhcCCCEEE
Confidence 34556643332 666666665 5999999 6666532 23456677777 89999996
No 226
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=38.05 E-value=1.3e+02 Score=31.09 Aligned_cols=66 Identities=14% Similarity=0.266 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 211 VEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 211 ~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
..+++.|.+.+.++.+.+-.+... -+|++++++-+|.|+.+-.+ +..+..+-+.|.+.|+|.+.|.
T Consensus 83 ~aa~~~l~~inp~v~v~~~~~~~~-~~~~~~~~~~~DlVid~~Dn----------~~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 83 VAAKKRLEEINSDVRVEAIVQDVT-AEELEELVTGVDLIIDATDN----------FETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCC-HHHHHHHHcCCCEEEEcCCC----------HHHHHHHHHHHHHhCCCEEEEe
Confidence 445666777777777766555432 46888888888988877332 2456678899999999988754
No 227
>PRK07877 hypothetical protein; Provisional
Probab=37.93 E-value=1.2e+02 Score=34.88 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-+..+++.+.+.|.++.|.+.-+... -+|++++++-+|.|+=+--++ ...-.+-+.|.++|+|+|.++
T Consensus 161 Kv~~a~~~l~~inp~i~v~~~~~~i~-~~n~~~~l~~~DlVvD~~D~~----------~~R~~ln~~a~~~~iP~i~~~ 228 (722)
T PRK07877 161 KAVVAARRIAELDPYLPVEVFTDGLT-EDNVDAFLDGLDVVVEECDSL----------DVKVLLREAARARRIPVLMAT 228 (722)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHhcCCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEEc
Confidence 36667778888888999988888766 479999998888777553322 344467789999999999998
No 228
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=37.91 E-value=4.9e+02 Score=27.10 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=76.5
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcC-CCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEE--eC
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSF-VRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMV--AR 253 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sf-V~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImi--aR 253 (466)
.+|..++..|.+...+.|+|.|=+.| +.+.+|.+.++.+.. .+.+..+.+-+-. -.+.++..++. .|.|.+ +-
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~ 94 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAEICSLARA--LKKDIDKAIDCGVDSIHTFIAT 94 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcEEEEEccc--CHHHHHHHHHcCcCEEEEEEcC
Confidence 35777777776777789999998865 566677766666554 4556777776531 12233443433 465444 32
Q ss_pred CcccC----cCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhh
Q 012335 254 GDLGM----EIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAA 311 (466)
Q Consensus 254 gDLg~----e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naa 311 (466)
.|+-. -...++........++.|+++|..|.+... ..++-+.+.+.+++.++
T Consensus 95 Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~ 150 (363)
T TIGR02090 95 SPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRA 150 (363)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHH
Confidence 23211 123455666677899999999998776432 33455666666666663
No 229
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=37.89 E-value=1e+02 Score=29.79 Aligned_cols=72 Identities=19% Similarity=0.139 Sum_probs=45.5
Q ss_pred hccCcCCCcEEEEcCCCC-----hhhHHHHHHHHHhcCCCceEEEe--ecCHHHHhcHHHHHhc--CCeeEEeCCcccCc
Q 012335 189 NWGVPNKIDMIALSFVRK-----GSDLVEVRNLLRVHAKNILLMSK--VENLEGVANFDDVLAN--SDAFMVARGDLGME 259 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~s-----a~dv~~~r~~l~~~~~~~~IiaK--IE~~~av~nideI~~~--sDgImiaRgDLg~e 259 (466)
+.+.+.|+|+|.++-+.. .-+...++++.... ++++++- |-++ +++.++++. +||+|+||.-..-.
T Consensus 156 ~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~---~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 156 KEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAV--NIPVIASGGAGKP---EHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred HHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCCEEEeCCCCCH---HHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 455789999999866543 22344455544332 4555552 3333 345555554 79999999988888
Q ss_pred CCchhH
Q 012335 260 IPIEKI 265 (466)
Q Consensus 260 ~~~e~v 265 (466)
++++++
T Consensus 231 ~~~~~~ 236 (243)
T cd04731 231 YTIAEL 236 (243)
T ss_pred CCHHHH
Confidence 877664
No 230
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=37.87 E-value=70 Score=32.26 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=40.3
Q ss_pred hccCcCCCcEEEEcCCC------ChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc----CCeeEEeCCcc
Q 012335 189 NWGVPNKIDMIALSFVR------KGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN----SDAFMVARGDL 256 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~------sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~----sDgImiaRgDL 256 (466)
+.+.+.|+|+|.++--. .......+.++....+.+++||+- -|+.+-.+++++ +|++|+||.-|
T Consensus 187 ~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~----GGI~~~~d~~kal~lGAd~V~ig~~~l 260 (299)
T cd02809 187 LRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLD----GGIRRGTDVLKALALGADAVLIGRPFL 260 (299)
T ss_pred HHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEe----CCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 45678999999985311 122344444443333335777773 466666666665 79999999655
No 231
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=37.81 E-value=84 Score=31.52 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=42.2
Q ss_pred HHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHH--hcHHHHHhc-CCeeEEe
Q 012335 185 EDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGV--ANFDDVLAN-SDAFMVA 252 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av--~nideI~~~-sDgImia 252 (466)
+++ ..+.+.|+|||.+.-+ +++++.++.+.+.....+++++|= -|+ +|+.++++. +|+|.++
T Consensus 194 eea-~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~As----GGI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 194 EEA-LAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAAA----GGINIENAAAYAAAGADILVTS 258 (272)
T ss_pred HHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEEE----CCCCHHHHHHHHHcCCcEEEEC
Confidence 444 4467899999999765 456777776666543335555552 233 788999888 8999775
No 232
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=37.66 E-value=32 Score=35.40 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=54.1
Q ss_pred hccCcCCCcEEEEcCCCChh-------hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc--CCeeEEeCCcccCc
Q 012335 189 NWGVPNKIDMIALSFVRKGS-------DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN--SDAFMVARGDLGME 259 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~-------dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~--sDgImiaRgDLg~e 259 (466)
+.+.+.|++.+.+ +.|++. |-+.++++-... .++.||+-= .....+...+.++. +||+|||||=|+..
T Consensus 159 ~~~~~~g~~~ltV-HgRtr~~~y~~~ad~~~I~~vk~~~-~~ipvi~NG-dI~s~~~a~~~l~~tg~DgVMigRga~~nP 235 (323)
T COG0042 159 RILEDAGADALTV-HGRTRAQGYLGPADWDYIKELKEAV-PSIPVIANG-DIKSLEDAKEMLEYTGADGVMIGRGALGNP 235 (323)
T ss_pred HHHHhcCCCEEEE-ecccHHhcCCCccCHHHHHHHHHhC-CCCeEEeCC-CcCCHHHHHHHHHhhCCCEEEEcHHHccCC
Confidence 4456788888866 445543 333343332221 225666521 11245566777777 79999999988752
Q ss_pred CCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 260 IPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 260 ~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
- +-+++ |.++.=...| |+.+|+-|..--
T Consensus 236 ~-------l~~~i---------------~~~~~g~~~~-~~~~e~~~~~~~ 263 (323)
T COG0042 236 W-------LFRQI---------------DYLETGELLP-PTLAEVLDILRE 263 (323)
T ss_pred c-------HHHHH---------------HHhhcCCCCC-CCHHHHHHHHHH
Confidence 2 22222 2333222223 899999888765
No 233
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=37.64 E-value=35 Score=31.83 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=43.6
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHH--hcHHHHHhcC-CeeEEe
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGV--ANFDDVLANS-DAFMVA 252 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av--~nideI~~~s-DgImia 252 (466)
.-+++.|+|.|.+=-. ++++++++.+.+...+.++.| |-.-|+ +|+.+..+.- |.|-+|
T Consensus 94 ~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v~i----e~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 94 EEALEAGADIIMLDNM-SPEDLKEAVEELRELNPRVKI----EASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTTSEE----EEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCcEEE----EEECCCCHHHHHHHHhcCCCEEEcC
Confidence 3467899999999875 779999999988877777444 444444 6888888874 988886
No 234
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=37.64 E-value=1.5e+02 Score=23.80 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=39.5
Q ss_pred CeeEeeecCCCCcEEecCCCEEEEEeCCCCCCCc--cEEe-ecchhhhhccCCCCEEEEeCCeEEEEEEEEec-CCCeEE
Q 012335 77 PEIRTGFLKDGKPIQLVQGQEITISTDYSLKGDE--KMIS-MSYKKLAEDLRPGSVILCSDGTISLTVLDCAK-ELGLVR 152 (466)
Q Consensus 77 pkiR~g~~~~~~~i~l~~G~~v~l~~~~~~~~~~--~~i~-v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~-~~~~i~ 152 (466)
|+|++ .++ .....+|+.++|..... |.+ ..-| -+.. .+..+.++.++++.+. +..+.. +.....
T Consensus 2 p~i~~-~~~---~~~~~~G~~v~l~C~~~--G~P~P~v~W~k~~~----~~~~~~~~~~~~~~L~--I~~v~~~D~G~Y~ 69 (88)
T cd05851 2 ADINV-KFK---DTYALKGQNVTLECFAL--GNPVPVIRWRKILE----PMPATAEISMSGAVLK--IFNIQPEDEGTYE 69 (88)
T ss_pred CceEE-ccc---cEEEeCCCcEEEEEEec--ccCCCEEEEEECCc----CCCCCCEEecCCCEEE--ECcCChhhCEEEE
Confidence 56666 222 36788999999987632 322 2222 2222 2334556666666544 433332 345688
Q ss_pred EEEeeC
Q 012335 153 CRCENS 158 (466)
Q Consensus 153 ~~v~~g 158 (466)
|.+.|.
T Consensus 70 C~A~N~ 75 (88)
T cd05851 70 CEAENI 75 (88)
T ss_pred EEEEcC
Confidence 998875
No 235
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=37.61 E-value=81 Score=31.57 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=42.5
Q ss_pred cHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHH--HhcHHHHHhc-CCeeEEeC
Q 012335 183 DKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEG--VANFDDVLAN-SDAFMVAR 253 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~a--v~nideI~~~-sDgImiaR 253 (466)
+.+++ ..+.+.|+|||.+.-+. .+++.++.+.+. .++++.| .-| .+|+.+++++ +|+|-++.
T Consensus 191 s~eea-~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~---~~ipi~A----iGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 191 TLEQL-KEALEAGADIIMLDNMS-PEELREAVALLK---GRVLLEA----SGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred CHHHH-HHHHHcCCCEEEECCcC-HHHHHHHHHHcC---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEEEe
Confidence 34555 56688999999998874 666666666543 2444444 223 4789999988 89998874
No 236
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=37.47 E-value=2.1e+02 Score=28.70 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=69.8
Q ss_pred CCccccCCcccCCCCCChhcHHHHHhccC-cCCCcEEEEc-CCCChhhHHHHHHHHHhcC-----CCceEEEeecCHHHH
Q 012335 164 RKNVNLPGVIVDLPTLTEKDKEDILNWGV-PNKIDMIALS-FVRKGSDLVEVRNLLRVHA-----KNILLMSKVENLEGV 236 (466)
Q Consensus 164 ~Kgvnlp~~~~~lp~lte~D~~di~~~~~-~~~~d~v~~s-fV~sa~dv~~~r~~l~~~~-----~~~~IiaKIE~~~av 236 (466)
|-|..-|+. .+|.+++..|.+..+ +.|+|.|=+. |.-+++|.+.++++.+... .+..+++-+.+..++
T Consensus 6 RDG~Q~~~~-----~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 80 (280)
T cd07945 6 RDGEQTSGV-----SFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSV 80 (280)
T ss_pred CCcCcCCCC-----ccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHH
Confidence 344444554 356677777734322 4599999886 5589988777777665321 146777776665554
Q ss_pred hcHHHHHhc-CCeeEEe--CCcccC----cCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 237 ANFDDVLAN-SDAFMVA--RGDLGM----EIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 237 ~nideI~~~-sDgImia--RgDLg~----e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
+. .+++ .|.|-+. -.|.-. ....++.....+++++.|+.+|..|.+.-
T Consensus 81 ~~---A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~ 135 (280)
T cd07945 81 DW---IKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYL 135 (280)
T ss_pred HH---HHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 43 3333 4654443 122111 12346666777889999999998877643
No 237
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.41 E-value=32 Score=34.84 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=28.3
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 174 ~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~l 209 (287)
T PRK14077 174 EYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFIL 209 (287)
T ss_pred EEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEE
Confidence 4578999999999999999998 5788998888
No 238
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=37.40 E-value=60 Score=30.99 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=37.2
Q ss_pred hccCcCCCcEEEEcC--------CCChhhHHHHHHHHHhcCCCceEEE--eecCHHHHhcHHHHHhc-CCeeEEeCC
Q 012335 189 NWGVPNKIDMIALSF--------VRKGSDLVEVRNLLRVHAKNILLMS--KVENLEGVANFDDVLAN-SDAFMVARG 254 (466)
Q Consensus 189 ~~~~~~~~d~v~~sf--------V~sa~dv~~~r~~l~~~~~~~~Iia--KIE~~~av~nideI~~~-sDgImiaRg 254 (466)
+.+.+.|+|++.++- .....+...++++.... ++++++ -|-+ .+++.++++. +||+++|+.
T Consensus 133 ~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t---~~~~~~~l~~GadgV~iGsa 204 (221)
T PRK01130 133 LAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINT---PEQAKKALELGAHAVVVGGA 204 (221)
T ss_pred HHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCC---HHHHHHHHHCCCCEEEEchH
Confidence 456789999997631 12334455555554433 355555 2322 2566777776 899999976
No 239
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.12 E-value=3.6e+02 Score=26.78 Aligned_cols=110 Identities=15% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCccccCCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhh----------HHHHHHHHHhcCCCceEEEeecCH
Q 012335 164 RKNVNLPGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSD----------LVEVRNLLRVHAKNILLMSKVENL 233 (466)
Q Consensus 164 ~Kgvnlp~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~d----------v~~~r~~l~~~~~~~~IiaKIE~~ 233 (466)
|-|-..|+.. +|..++..|.+..-+.|+|+|=+.|..+.++ .+.++.+.....++.++.+..-..
T Consensus 7 RDG~q~~~~~-----f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 7 RDGGYVNNWD-----FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred ccCccccCcc-----CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Q ss_pred -HHHhcHHHHHhc-CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 234 -EGVANFDDVLAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 234 -~av~nideI~~~-sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
.-++.++...+. .|.|-|+ ++...+..+ +++++.++++|..|.+.
T Consensus 82 ~~~~~~l~~a~~~gv~~iri~-------~~~~~~~~~-~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 82 NDDIDLLEPASGSVVDMIRVA-------FHKHEFDEA-LPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCCHHHHHHHhcCCcCEEEEe-------cccccHHHH-HHHHHHHHHCCCeEEEE
No 240
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=37.07 E-value=77 Score=32.98 Aligned_cols=94 Identities=22% Similarity=0.114 Sum_probs=59.6
Q ss_pred HHHHHhccCcCCCcEEEEcCC---------CChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc----CCeeE
Q 012335 184 KEDILNWGVPNKIDMIALSFV---------RKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN----SDAFM 250 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV---------~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~----sDgIm 250 (466)
.+|. +.+.+.|+|+|.+|-- .+.+-+.++++.+.+.+.++.||+- -|+.|=.+|+++ +|++.
T Consensus 224 ~~dA-~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~----GGIr~G~Dv~kalaLGA~aV~ 298 (344)
T cd02922 224 VEDA-VLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD----GGVRRGTDVLKALCLGAKAVG 298 (344)
T ss_pred HHHH-HHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe----CCCCCHHHHHHHHHcCCCEEE
Confidence 3455 5668999999999863 2333355566655455556777763 577777777766 79999
Q ss_pred EeCCcccCcC--Cch----hHHHHHHHHHHHHHHcCCC
Q 012335 251 VARGDLGMEI--PIE----KIFLAQKVMIHKANIQGKP 282 (466)
Q Consensus 251 iaRgDLg~e~--~~e----~v~~~qk~ii~~~~~~gkP 282 (466)
|||.=|-.-. +.+ -+..+++++-......|..
T Consensus 299 iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 299 LGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred ECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9987765322 333 3334555666666666644
No 241
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.07 E-value=1.9e+02 Score=23.85 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhcCCCceEE---EeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeE
Q 012335 208 SDLVEVRNLLRVHAKNILLM---SKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVV 284 (466)
Q Consensus 208 ~dv~~~r~~l~~~~~~~~Ii---aKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi 284 (466)
.....+++.+.+.|...... -+-+. .-.+|++-+.-+|.|++--+-.+ ..+...+-+.|++.|+|++
T Consensus 10 ~~~~~~~~~~~~~G~~~~~hg~~~~~~~--~~~~l~~~i~~aD~VIv~t~~vs--------H~~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHHGRDGGDEK--KASRLPSKIKKADLVIVFTDYVS--------HNAMWKVKKAAKKYGIPII 79 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEEecCCCCcc--chhHHHHhcCCCCEEEEEeCCcC--------hHHHHHHHHHHHHcCCcEE
Confidence 45677888888888766666 22222 22358888888999988533222 2456778889999999999
Q ss_pred Eee
Q 012335 285 TAT 287 (466)
Q Consensus 285 ~AT 287 (466)
.+-
T Consensus 80 ~~~ 82 (97)
T PF10087_consen 80 YSR 82 (97)
T ss_pred EEC
Confidence 753
No 242
>PRK08329 threonine synthase; Validated
Probab=36.89 E-value=2.7e+02 Score=28.75 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEEEec
Q 012335 334 PLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSVIVP 382 (466)
Q Consensus 334 ~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv~~~ 382 (466)
-.+.-+..++..|.+.+.+.|++.| ||++++.+|.| +-..|.+.+ +|
T Consensus 87 fKdRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~aa~~G~~~~v~-vp 135 (347)
T PRK08329 87 FKDRGTYVTVAKLKEEGINEVVIDS-SGNAALSLALYSLSEGIKVHVF-VS 135 (347)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHcCCcEEEE-EC
Confidence 3455666666667777888777766 88888776665 445777766 44
No 243
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=36.84 E-value=1.7e+02 Score=23.52 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=38.6
Q ss_pred cEEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEE-EEEEE---ecCCCeEEEEEeeC--eEec
Q 012335 89 PIQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISL-TVLDC---AKELGLVRCRCENS--AVLG 162 (466)
Q Consensus 89 ~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l-~V~~v---~~~~~~i~~~v~~g--G~l~ 162 (466)
...+.+|+.++|...-.-.-....-|.-....+..-.......+.+|.+.+ .+... ..+.+...|.+.|+ |.+.
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 466778999999876221112233333211112111112244556775443 22210 12456789999988 7776
Q ss_pred CC
Q 012335 163 ER 164 (466)
Q Consensus 163 ~~ 164 (466)
++
T Consensus 88 s~ 89 (95)
T cd05722 88 SR 89 (95)
T ss_pred Ee
Confidence 54
No 244
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=36.83 E-value=66 Score=30.60 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=38.1
Q ss_pred hccCcCCCcEEEEcCC------CChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc--CCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALSFV------RKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN--SDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV------~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~--sDgImiaRgDLg 257 (466)
+...+.|+|+|.++-. ....+...++++... .+++|++ -......+.+.++++. +|+||+||+=|.
T Consensus 145 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~--~~ipvi~-~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 145 KALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA--VSIPVIA-NGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC--CCCeEEE-eCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 5556789999966432 112345555443322 3566666 2222233445555554 899999998665
No 245
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=36.70 E-value=1.8e+02 Score=29.09 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=37.6
Q ss_pred CHHHHHHHHHhCCceEEEecCCCCHHHHHH-HHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCCCcEEecCCCEEEEE
Q 012335 23 SVEMAEKLLRAGMNVARFNFSHGSHAYHQE-TLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDGKPIQLVQGQEITIS 101 (466)
Q Consensus 23 ~~~~l~~li~~G~~v~RiN~shg~~~~~~~-~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~l~ 101 (466)
+.+.-++|+++|+||+ .-|+|-+.++ +.+.+-+.. .+=+|...--.++|.--++ ++ ..|.++.++
T Consensus 48 t~k~y~~l~~~G~dvi----T~GNH~wd~~ei~~~i~~~~-~ilRP~N~p~~~~G~G~~~--------f~-~ng~ki~V~ 113 (266)
T COG1692 48 TEKIYKELLEAGADVI----TLGNHTWDQKEILDFIDNAD-RILRPANYPDGTPGKGSRI--------FK-INGKKLAVI 113 (266)
T ss_pred CHHHHHHHHHhCCCEE----ecccccccchHHHHHhhccc-ceeccCCCCCCCCcceEEE--------EE-eCCcEEEEE
Confidence 6888999999999995 4477665443 333333322 2335555555566543333 22 456666655
Q ss_pred e
Q 012335 102 T 102 (466)
Q Consensus 102 ~ 102 (466)
.
T Consensus 114 N 114 (266)
T COG1692 114 N 114 (266)
T ss_pred E
Confidence 3
No 246
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.46 E-value=65 Score=35.32 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=39.3
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 10 KTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 10 ~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
+-.+.+.+|+. ...+..+.|+++|++++=+..+||..+...+.|+.+|+
T Consensus 231 rL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~ 279 (502)
T PRK07107 231 RYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE 279 (502)
T ss_pred CeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH
Confidence 45667788875 45789999999999999999999987776666666665
No 247
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=36.35 E-value=4.7e+02 Score=28.55 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=75.1
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcC-CCChhhHHHHHHHHHhcCCCceEEEeec-CHHHHhcHHHHHhc--CCee--EE
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSF-VRKGSDLVEVRNLLRVHAKNILLMSKVE-NLEGVANFDDVLAN--SDAF--MV 251 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sf-V~sa~dv~~~r~~l~~~~~~~~IiaKIE-~~~av~nideI~~~--sDgI--mi 251 (466)
.+|..|+..|.+...+.|+|+|=+.| +.+..|.+.++.+.. ...+..+.+-.- +.+.++..-+-+.- .+.| ++
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~-~~~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~~ 97 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIAR-TVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFI 97 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHH-hCCCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEEE
Confidence 36777888776667789999998866 566888888877654 344566666553 23333322222211 2333 33
Q ss_pred eCCcccCc----CCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 252 ARGDLGME----IPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 252 aRgDLg~e----~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
+-.|+-.+ ...+++.....+.++.|+++|.-|.+..+ ...+-....+.+++.+
T Consensus 98 ~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E------d~~r~d~~~l~~~~~~ 154 (494)
T TIGR00973 98 ATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE------DAGRTEIPFLARIVEA 154 (494)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC------CCCCCCHHHHHHHHHH
Confidence 33333221 23467777778999999999988776543 1223334455555555
No 248
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=36.29 E-value=77 Score=30.79 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=22.3
Q ss_pred EEecCCCEEEEEeCC---CCCCCccEEeecchhhhhccCCCCEEEE-eCCeEEEE
Q 012335 90 IQLVQGQEITISTDY---SLKGDEKMISMSYKKLAEDLRPGSVILC-SDGTISLT 140 (466)
Q Consensus 90 i~l~~G~~v~l~~~~---~~~~~~~~i~v~~~~~~~~v~~Gd~i~i-ddG~i~l~ 140 (466)
|+.+.|.+++||..- ...++...-+-...-+.++|++||.|+. +.+.-.++
T Consensus 69 i~te~g~~l~LTp~HLI~v~~~~~~~~~~~~~vfA~~V~~Gd~v~~~~~~~~~~~ 123 (217)
T PF01079_consen 69 IETEDGRSLTLTPNHLIFVADCNGSESSNFRAVFASDVRVGDCVLVSDEGGGKLR 123 (217)
T ss_dssp EEETTS-EEEE-TT-EEEEEETTTTEE---EEEEGGG--TT-EEEEE-TTT--EE
T ss_pred EEcCCCCeEEecCCcEEEEecCCCCcccccceeehhhCCCCCEEEEEEcCCCcEE
Confidence 666777788887651 1111111111113456789999999999 44333344
No 249
>PRK08185 hypothetical protein; Provisional
Probab=36.23 E-value=1.1e+02 Score=30.99 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCce
Q 012335 21 SRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILC 68 (466)
Q Consensus 21 ~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i 68 (466)
+.+.+.+++.+++|.+-+=|.-||-+.++..+.-..+.+.+..+|.++
T Consensus 78 g~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 78 GATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred CCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 457999999999999999999999999998888888888888777665
No 250
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=36.18 E-value=1e+02 Score=32.66 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=26.4
Q ss_pred CeEEEEec-CCCC-CC-HHHHHHHHHhCCceEEEecC--CC
Q 012335 10 KTKIVCTL-GPAS-RS-VEMAEKLLRAGMNVARFNFS--HG 45 (466)
Q Consensus 10 ~tkIi~Ti-Gp~~-~~-~~~l~~li~~G~~v~RiN~s--hg 45 (466)
.+.+|++| |+.+ .+ .+.++.+-++|++.+=|||| |+
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 35899999 6443 22 34566677889999999998 65
No 251
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=36.14 E-value=3.1e+02 Score=29.44 Aligned_cols=115 Identities=19% Similarity=0.233 Sum_probs=68.1
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCCC-hhhHHHHHHHHHhcCCCceEEE-eecCHHHHhcHHHHHhcCCeeEEe--CCc
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVRK-GSDLVEVRNLLRVHAKNILLMS-KVENLEGVANFDDVLANSDAFMVA--RGD 255 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~s-a~dv~~~r~~l~~~~~~~~Iia-KIE~~~av~nideI~~~sDgImia--RgD 255 (466)
.+.+.+.+ +..++.|+|+|.+-...- ...+.+.-+.+.+.-.+..|++ -+-|+++..++-+ .=+|+|-|+ +|-
T Consensus 222 ~~~~~~r~-~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G~ 298 (450)
T TIGR01302 222 REFDKERA-EALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPGS 298 (450)
T ss_pred chhHHHHH-HHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCCc
Confidence 45556666 556889999998865321 1223322233333324677777 7888777765544 248999866 552
Q ss_pred ccC-----cCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 256 LGM-----EIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 256 Lg~-----e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
-.. ..+.+.+ .+...+.+.|++.+.|+|...-+-. -.|++.|
T Consensus 299 ~~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpviadGGi~~------------~~di~kA 345 (450)
T TIGR01302 299 ICTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIADGGIRY------------SGDIVKA 345 (450)
T ss_pred CCccceecCCCccHH-HHHHHHHHHHhhcCCeEEEeCCCCC------------HHHHHHH
Confidence 111 1222322 3445667778889999887666553 3677777
No 252
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=36.14 E-value=5.3e+02 Score=27.00 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=75.4
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcCCCChh-hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEE--eC
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSFVRKGS-DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMV--AR 253 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sfV~sa~-dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImi--aR 253 (466)
.+|..++..|.+...+.|+|.|=+.|-...+ +.+.++.+. +.+.+..+++-.-. -.+.++..++. .|.|-+ +-
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~~ 98 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIA-KLGLNASILALNRA--VKSDIDASIDCGVDAVHIFIAT 98 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-hcCCCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEcC
Confidence 3566777777566778999999887755443 345555544 34555666665322 12334444443 454333 33
Q ss_pred Cccc----CcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhh
Q 012335 254 GDLG----MEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAAE 312 (466)
Q Consensus 254 gDLg----~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE 312 (466)
.|+- .....++.....++.++.|++.|..|.+.. ....+-+...+.+++.+++
T Consensus 99 Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~------ed~~r~~~~~l~~~~~~~~ 155 (378)
T PRK11858 99 SDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA------EDASRTDLDFLIEFAKAAE 155 (378)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe------ccCCCCCHHHHHHHHHHHH
Confidence 3321 112345666677889999999999887742 2455667777777777743
No 253
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=36.05 E-value=2.5e+02 Score=27.52 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=49.6
Q ss_pred CcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEE
Q 012335 192 VPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMV 251 (466)
Q Consensus 192 ~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImi 251 (466)
.+.|+|+|.+= ++...++.++-+++++.|....|.-+=+|+ ++.++.++...|.|++
T Consensus 81 a~agad~It~H-~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll 137 (220)
T COG0036 81 AKAGADIITFH-AEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL 137 (220)
T ss_pred HHhCCCEEEEE-eccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE
Confidence 68999999775 467789999999999999888899888986 6679999999999987
No 254
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=36.03 E-value=1.2e+02 Score=28.06 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCc
Q 012335 23 SVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGIL 67 (466)
Q Consensus 23 ~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~ 67 (466)
-.+.+.+++++|++.+-|.--..+.++..+.++.+++..++++.+
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~ 58 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVP 58 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGC
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEE
Confidence 357888999999999999999999999999999999998877654
No 255
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=35.93 E-value=1.5e+02 Score=30.90 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
++.+++.+.+.+..+.+.+--+.... +|++++++-.|.|+-+-.++ ..+..+-+.|++.++|++.+.
T Consensus 191 a~~~~~~l~~~np~v~v~~~~~~~~~-~~~~~~~~~~D~Vv~~~d~~----------~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 191 VDSAAQRLAALNPDVQVEAVQERVTS-DNVEALLQDVDVVVDGADNF----------PTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCh-HHHHHHHhCCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEEE
Confidence 55566777777777776554433332 57888888889888763332 256678899999999988874
No 256
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.92 E-value=32 Score=34.97 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=28.3
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 173 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~l 208 (292)
T PRK01911 173 SYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVI 208 (292)
T ss_pred EEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEE
Confidence 4578999999999999999998 4778888888
No 257
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=35.83 E-value=95 Score=31.85 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=25.9
Q ss_pred eEEEEecCCCCCCH--HHHHHHHHhCCceEEEecCC
Q 012335 11 TKIVCTLGPASRSV--EMAEKLLRAGMNVARFNFSH 44 (466)
Q Consensus 11 tkIi~TiGp~~~~~--~~l~~li~~G~~v~RiN~sh 44 (466)
+.+++.|+..+... +..+.+.++|++.+=||+|+
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~sc 137 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYY 137 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 67899996654332 56667788899999999985
No 258
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=35.56 E-value=2.1e+02 Score=28.37 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=70.9
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCC-eeEE-eCCcccCcCCchhHH
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSD-AFMV-ARGDLGMEIPIEKIF 266 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sD-gImi-aRgDLg~e~~~e~v~ 266 (466)
+.+.+.|+|+|.++..- .++..++.+.+.+.|-..-++..=.| ..+.+..|++.+| .|++ ++...+-+- ..+.
T Consensus 109 ~~~~~aGvdgviipDlp-~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~TG~~--~~~~ 183 (256)
T TIGR00262 109 AKCKEVGVDGVLVADLP-LEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVTGAR--NRAA 183 (256)
T ss_pred HHHHHcCCCEEEECCCC-hHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCCCCc--ccCC
Confidence 45578999999999864 47788888888887754333333333 3678899999998 4443 432221110 0112
Q ss_pred HHHHHHHHHHHH-cCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-hhhhccchhhHHHH
Q 012335 267 LAQKVMIHKANI-QGKPVVTATQMLESMIKSPRPTRAEATDVANA-AENFINYGDLFKKI 324 (466)
Q Consensus 267 ~~qk~ii~~~~~-~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na-aE~~~~~~~~~~~~ 324 (466)
.-....++..++ .++|+++... .=|.+.+..+..+ |.-.+--..+++.+
T Consensus 184 ~~~~~~i~~lr~~~~~pi~vgfG---------I~~~e~~~~~~~~GADgvVvGSaiv~~~ 234 (256)
T TIGR00262 184 SALNELVKRLKAYSAKPVLVGFG---------ISKPEQVKQAIDAGADGVIVGSAIVKII 234 (256)
T ss_pred hhHHHHHHHHHhhcCCCEEEeCC---------CCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 223344444444 3678776543 5566677776666 55444334445444
No 259
>PTZ00344 pyridoxal kinase; Provisional
Probab=35.53 E-value=1.8e+02 Score=29.04 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=69.1
Q ss_pred CCCCCChhcHHHHHhccC----cCCCcEEEEcCCCChhhHHHHHHHHHhc---CCCceEEEe---------ecCHHHHhc
Q 012335 175 DLPTLTEKDKEDILNWGV----PNKIDMIALSFVRKGSDLVEVRNLLRVH---AKNILLMSK---------VENLEGVAN 238 (466)
Q Consensus 175 ~lp~lte~D~~di~~~~~----~~~~d~v~~sfV~sa~dv~~~r~~l~~~---~~~~~IiaK---------IE~~~av~n 238 (466)
.-|.+++.+.+.+.+... ...+|+|...|+-+++.+..+.+++... +.++.++.= .-..+..+.
T Consensus 53 ~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~ 132 (296)
T PTZ00344 53 KGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDA 132 (296)
T ss_pred cCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHH
Confidence 345667766666533222 3467999999999999999999988632 323344322 234566677
Q ss_pred HHHHHhcCCeeEEeCCcccCcCCc--hhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 239 FDDVLANSDAFMVARGDLGMEIPI--EKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 239 ideI~~~sDgImiaRgDLg~e~~~--e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
+.+++..+|-+....-++..=.+. .....+ ++..++..+.|.+.++.|
T Consensus 133 ~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~-~~~~~~l~~~g~~~VvVT 182 (296)
T PTZ00344 133 YRELIPYADVITPNQFEASLLSGVEVKDLSDA-LEAIDWFHEQGIPVVVIT 182 (296)
T ss_pred HHHHhhhCCEEeCCHHHHHHHhCCCCCCHHHH-HHHHHHHHHhCCCEEEEE
Confidence 788999999998887775433332 122222 233444445576766556
No 260
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=35.52 E-value=3.6e+02 Score=24.88 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=50.4
Q ss_pred hccCcCCCcEEEE-----cCCCCh----hhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEEeCCcccC
Q 012335 189 NWGVPNKIDMIAL-----SFVRKG----SDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMVARGDLGM 258 (466)
Q Consensus 189 ~~~~~~~~d~v~~-----sfV~sa----~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImiaRgDLg~ 258 (466)
+.+.+.|+|+|-+ +|+... +.+.++++.. +....+--++.++. +.++.+.++ +||+.|-=+
T Consensus 19 ~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~~--~~~~~~~~~g~dgv~vh~~---- 89 (211)
T cd00429 19 KRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENPE--RYIEAFAKAGADIITFHAE---- 89 (211)
T ss_pred HHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCHH--HHHHHHHHcCCCEEEECcc----
Confidence 6778899999999 776444 3444444432 22222445665553 346666655 699877311
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 259 EIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 259 e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
+.+ .....++.+++.|..+++.+
T Consensus 90 --~~~----~~~~~~~~~~~~~~~~g~~~ 112 (211)
T cd00429 90 --ATD----HLHRTIQLIKELGMKAGVAL 112 (211)
T ss_pred --chh----hHHHHHHHHHHCCCeEEEEe
Confidence 111 12345888889998888764
No 261
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=35.41 E-value=33 Score=31.03 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 269 QKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 269 qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
...+|+...+.|+|+|+||.+ +|.|. =|.-++.+
T Consensus 65 ~~evi~~I~~~G~PviVAtDV------~p~P~--~V~Kia~~ 98 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATDV------SPPPE--TVKKIARS 98 (138)
T ss_pred HHHHHHHHHHcCCEEEEEecC------CCCcH--HHHHHHHH
Confidence 467889999999999999974 24443 35555555
No 262
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=35.22 E-value=55 Score=31.69 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=36.3
Q ss_pred ccCcCCCcEEEEcCCCChhh--------HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc
Q 012335 190 WGVPNKIDMIALSFVRKGSD--------LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 190 ~~~~~~~d~v~~sfV~sa~d--------v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~ 245 (466)
.|.+.|++|| .|||..-+| ++++++++...|.+.+|++ .+++|.++++++
T Consensus 117 ~Aa~aGa~yi-spyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-----AS~r~~~~v~~~ 174 (213)
T TIGR00875 117 LAAKAGATYV-SPFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-----ASVRHPRHVLEA 174 (213)
T ss_pred HHHHcCCCEE-EeecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-----eccCCHHHHHHH
Confidence 4567899977 789888766 5566677776677777776 577777777753
No 263
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=35.17 E-value=1.2e+02 Score=29.81 Aligned_cols=83 Identities=20% Similarity=0.146 Sum_probs=50.9
Q ss_pred hccCcCCCcEEEEcCCCC-----hhhHHHHHHHHHhcCCCceEEEe--ecCHHHHhcHHHHHhc--CCeeEEeCCcccCc
Q 012335 189 NWGVPNKIDMIALSFVRK-----GSDLVEVRNLLRVHAKNILLMSK--VENLEGVANFDDVLAN--SDAFMVARGDLGME 259 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~s-----a~dv~~~r~~l~~~~~~~~IiaK--IE~~~av~nideI~~~--sDgImiaRgDLg~e 259 (466)
+...+.|+|.|.++-+.+ .-|...++++.... ++++++- |-++ +.+.++++. +||+|+|+....-+
T Consensus 162 ~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~---~di~~~~~~g~~dgv~~g~a~~~~~ 236 (254)
T TIGR00735 162 KEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV--KIPVIASGGAGKP---EHFYEAFTKGKADAALAASVFHYRE 236 (254)
T ss_pred HHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCH---HHHHHHHHcCCcceeeEhHHHhCCC
Confidence 455789999988876544 22355555555432 4566652 2222 233344442 69999999877667
Q ss_pred CCchhHHHHHHHHHHHHHHcCCCe
Q 012335 260 IPIEKIFLAQKVMIHKANIQGKPV 283 (466)
Q Consensus 260 ~~~e~v~~~qk~ii~~~~~~gkPv 283 (466)
++++ .+.+.|.++|.|+
T Consensus 237 ~~~~-------~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIG-------EVKEYLAERGIPV 253 (254)
T ss_pred CCHH-------HHHHHHHHCCCcc
Confidence 7654 4566677777764
No 264
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=35.01 E-value=92 Score=32.55 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=56.9
Q ss_pred HHHHHhccCcCCCcEEEEcCCCChhhHHHHHHH-------------------------HHhcCCCceEEEeecCHHHHhc
Q 012335 184 KEDILNWGVPNKIDMIALSFVRKGSDLVEVRNL-------------------------LRVHAKNILLMSKVENLEGVAN 238 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~-------------------------l~~~~~~~~IiaKIE~~~av~n 238 (466)
++.+ ..|++.|+|.|.++- +++..++++ +...|+....+..|.+++.++.
T Consensus 15 k~~v-t~AlEsGvd~vv~~~----~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~ 89 (354)
T PF01959_consen 15 KEVV-TAALESGVDGVVVDD----EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEE 89 (354)
T ss_pred HHHH-HHHHHcCCCEEEECH----hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHH
Confidence 5666 789999999998873 334443322 1223455567899999999999
Q ss_pred HHHHHhcCCeeEEeCCcccCcCCchhHHH
Q 012335 239 FDDVLANSDAFMVARGDLGMEIPIEKIFL 267 (466)
Q Consensus 239 ideI~~~sDgImiaRgDLg~e~~~e~v~~ 267 (466)
+-+.....|-+++--.|-. -||+|.+-.
T Consensus 90 a~~~~~~~~~~iv~~~Dw~-iIPlEnliA 117 (354)
T PF01959_consen 90 ACELAKRADYVIVEFRDWT-IIPLENLIA 117 (354)
T ss_pred HHHHhccCCeEEEEcCCCc-EecHHHHHH
Confidence 9999998998888777775 489987654
No 265
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=34.95 E-value=2.8e+02 Score=25.59 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=40.2
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEE---EeecCHHHHhcHHHHHh-cCCeeEEeCC
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLM---SKVENLEGVANFDDVLA-NSDAFMVARG 254 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~Ii---aKIE~~~av~nideI~~-~sDgImiaRg 254 (466)
+.+.+.|+|++.++.-...+.+.++.+++.+.| ++++ ..-.|+.-+. . ++. -+|.+.+.++
T Consensus 71 ~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g--~~~~v~~~~~~t~~e~~--~-~~~~~~d~v~~~~~ 135 (202)
T cd04726 71 EMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG--KEVQVDLIGVEDPEKRA--K-LLKLGVDIVILHRG 135 (202)
T ss_pred HHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHH--H-HHHCCCCEEEEcCc
Confidence 455789999999987666666777777777655 4444 3555554443 2 444 5798888653
No 266
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=34.92 E-value=1.2e+02 Score=30.61 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCC
Q 012335 19 PASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGI 66 (466)
Q Consensus 19 p~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~ 66 (466)
-.+.+.+.+++.+++|.+..=|.-||-+.++..+....+++.+..+|.
T Consensus 82 DH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv 129 (282)
T TIGR01859 82 DHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV 129 (282)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 334479999999999999999999999999988888888888877764
No 267
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=34.84 E-value=1.8e+02 Score=30.68 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
+..+++.|.+.+..+.|.+--+.... +|++++++-.|.|+-+-.+ +..+..+-+.|+++|+|.+.+
T Consensus 98 a~~a~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vvd~~d~----------~~~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 98 AQSARDSIVEINPLVNVRLHEFRLDP-SNAVELFSQYDLILDGTDN----------FATRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred HHHHHHHHHHhCCCcEEEEEeccCCh-hHHHHHHhcCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 45567778888887777654444332 4778888889988866333 245667889999999998775
No 268
>PRK15108 biotin synthase; Provisional
Probab=34.83 E-value=99 Score=32.03 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=24.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHHhCCceEEEec
Q 012335 11 TKIVCTLGPASRSVEMAEKLLRAGMNVARFNF 42 (466)
Q Consensus 11 tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~ 42 (466)
..+++|+|+- +.+.+++|.++|++.+-+|+
T Consensus 125 i~v~~s~G~l--s~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 125 LETCMTLGTL--SESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred CEEEEeCCcC--CHHHHHHHHHcCCCEEeecc
Confidence 4678888965 49999999999999766653
No 269
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.80 E-value=3.2e+02 Score=29.15 Aligned_cols=106 Identities=12% Similarity=0.160 Sum_probs=59.6
Q ss_pred ChhcHHHHHhccCcCCCcEEE--EcCCCChhhHHHHHHHHHhcCCCceEEE-eecCHHHHhcHHHHHhcCCeeEEeCCcc
Q 012335 180 TEKDKEDILNWGVPNKIDMIA--LSFVRKGSDLVEVRNLLRVHAKNILLMS-KVENLEGVANFDDVLANSDAFMVARGDL 256 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~--~sfV~sa~dv~~~r~~l~~~~~~~~Iia-KIE~~~av~nideI~~~sDgImiaRgDL 256 (466)
++.+.+.+ +..++.|+|+|+ .+.=. .+.+.++-+.+++.-.+..|++ -|-|.++..++.+. =+|+|.+|=|-=
T Consensus 151 ~~~~~~~v-~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~G 226 (404)
T PRK06843 151 DIDTIERV-EELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPG 226 (404)
T ss_pred CHHHHHHH-HHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCC
Confidence 34455566 556889999999 44422 3444444444554434566655 78888777666552 489999874331
Q ss_pred cC-------cCCchhHHHHHHHHHHHHHHcCCCeEEeehhh
Q 012335 257 GM-------EIPIEKIFLAQKVMIHKANIQGKPVVTATQML 290 (466)
Q Consensus 257 g~-------e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmL 290 (466)
++ ..+.+.+. +-..+-+.+++.+.|||....+-
T Consensus 227 s~c~tr~~~g~g~p~lt-ai~~v~~~~~~~~vpVIAdGGI~ 266 (404)
T PRK06843 227 SICTTRIVAGVGVPQIT-AICDVYEVCKNTNICIIADGGIR 266 (404)
T ss_pred cCCcceeecCCCCChHH-HHHHHHHHHhhcCCeEEEeCCCC
Confidence 11 11222221 11223345566789999776544
No 270
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=34.79 E-value=3e+02 Score=27.73 Aligned_cols=98 Identities=12% Similarity=0.055 Sum_probs=57.0
Q ss_pred HHHHhccCcCCCcEEEEcCC------CChh-hHHHHHHHHHhcCCCceEEEeecC---HHHHhcHHHHHhc-CCeeEEeC
Q 012335 185 EDILNWGVPNKIDMIALSFV------RKGS-DLVEVRNLLRVHAKNILLMSKVEN---LEGVANFDDVLAN-SDAFMVAR 253 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~sfV------~sa~-dv~~~r~~l~~~~~~~~IiaKIE~---~~av~nideI~~~-sDgImiaR 253 (466)
+.+.+|.++.|+++|++.=- -|.+ -.+-++........++.|++-+-. .++++......+. +|++|+.+
T Consensus 24 ~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcC
Confidence 33337889999999876531 2233 333334455555667899998853 3455555544443 69999986
Q ss_pred CcccCcCCchhHHHHHHHHHHHHHHc-CCCeEEe
Q 012335 254 GDLGMEIPIEKIFLAQKVMIHKANIQ-GKPVVTA 286 (466)
Q Consensus 254 gDLg~e~~~e~v~~~qk~ii~~~~~~-gkPvi~A 286 (466)
-..- ....+.+...-+.| |.+. +.|+++-
T Consensus 104 P~y~-~~~~~~l~~~f~~i---a~a~~~lpv~iY 133 (294)
T TIGR02313 104 PYYN-KPNQEALYDHFAEV---ADAVPDFPIIIY 133 (294)
T ss_pred ccCC-CCCHHHHHHHHHHH---HHhccCCCEEEE
Confidence 4432 12234444444444 4456 7898864
No 271
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.69 E-value=4.1e+02 Score=26.24 Aligned_cols=70 Identities=9% Similarity=0.137 Sum_probs=40.1
Q ss_pred hcHHHHHhccCcCCCcEEEEcCC-----------CChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-----
Q 012335 182 KDKEDILNWGVPNKIDMIALSFV-----------RKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN----- 245 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV-----------~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~----- 245 (466)
.|..+..+.+.+.|+|+|-+.+- ++++.+.++-+.+.+. -+..|++|+-.-...+++.++++.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~~~a~~l~~~G 189 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYFDLEDIVELAKAAERAG 189 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 34444336667789999987642 1233444443334332 257899998654333344455443
Q ss_pred CCeeEEe
Q 012335 246 SDAFMVA 252 (466)
Q Consensus 246 sDgImia 252 (466)
+|+|.+.
T Consensus 190 ad~i~~~ 196 (289)
T cd02810 190 ADGLTAI 196 (289)
T ss_pred CCEEEEE
Confidence 5888875
No 272
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=34.61 E-value=1.2e+02 Score=29.89 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=44.4
Q ss_pred CCCeEEEEec-----CCCCCC-HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHH-cCCce
Q 012335 8 SPKTKIVCTL-----GPASRS-VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNN-TGILC 68 (466)
Q Consensus 8 ~r~tkIi~Ti-----Gp~~~~-~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~-~~~~i 68 (466)
...+|+|++- .|+.++ .+.+++|.+.|.|+.+|-..--+.++..++++..+++.+. .+.|+
T Consensus 133 ~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~ 200 (253)
T PRK02412 133 EHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPL 200 (253)
T ss_pred HcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 3478999987 333222 3567888999999999998877788888888777776543 45553
No 273
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=34.49 E-value=1.1e+02 Score=31.68 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=39.5
Q ss_pred hccCcCCCcEEEEcCCC------ChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc----CCeeEEeCCc
Q 012335 189 NWGVPNKIDMIALSFVR------KGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN----SDAFMVARGD 255 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~------sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~----sDgImiaRgD 255 (466)
..|+++|+++|.+|--- .+.-|..+.+.+..-+.++.++-- -||++=.+|+++ +-+|+|||--
T Consensus 238 ~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lD----GGVR~G~DVlKALALGAk~VfiGRP~ 310 (363)
T KOG0538|consen 238 RKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLD----GGVRRGTDVLKALALGAKGVFIGRPI 310 (363)
T ss_pred HHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEe----cCcccchHHHHHHhcccceEEecCch
Confidence 35678888888888542 344566666666655555555542 366666666665 5788888743
No 274
>PRK08223 hypothetical protein; Validated
Probab=34.37 E-value=1.8e+02 Score=29.55 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
-++.+++.+.+.|.++.|.+-=|.. .-+|++++++-.|.|+=+ -|- + . ......+-+.|+++|+|+|.|
T Consensus 82 Kve~a~~~l~~iNP~v~V~~~~~~l-~~~n~~~ll~~~DlVvD~-~D~----~--~-~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 82 KAEVLAEMVRDINPELEIRAFPEGI-GKENADAFLDGVDVYVDG-LDF----F--E-FDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccc-CccCHHHHHhCCCEEEEC-CCC----C--c-HHHHHHHHHHHHHcCCCEEEE
Confidence 3555667777888877776543332 236899999888977522 121 0 0 235677888999999999987
No 275
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=34.19 E-value=3.6e+02 Score=28.03 Aligned_cols=125 Identities=15% Similarity=0.113 Sum_probs=72.9
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcCCCChh-hHHHHHHHHHhcCCCceEEEee-cCHHHHhcHHHHHhc-CCeeEE--e
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSFVRKGS-DLVEVRNLLRVHAKNILLMSKV-ENLEGVANFDDVLAN-SDAFMV--A 252 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sfV~sa~-dv~~~r~~l~~~~~~~~IiaKI-E~~~av~nideI~~~-sDgImi--a 252 (466)
.+|..++..|.+...+.|+|.|=+.|-...+ |.+.++.+. +.+.+..+.+-. -+.+. ++..++. .|.|.+ +
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~~~~d---i~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIV-ALGLPARLMAWCRARDAD---IEAAARCGVDAVHISIP 94 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HcCCCcEEEEEcCCCHHH---HHHHHcCCcCEEEEEEc
Confidence 3677777777677778999999887665443 345555543 344456666654 33333 3333333 354443 2
Q ss_pred CCcccCc----CCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhh
Q 012335 253 RGDLGME----IPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAAE 312 (466)
Q Consensus 253 RgDLg~e----~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE 312 (466)
-.|+-.+ ...++.....++.++.++++|..|-+.. ...++-+...+.+++.+++
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~ 152 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG------EDASRADPDFLVELAEVAA 152 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee------cCCCCCCHHHHHHHHHHHH
Confidence 2332111 1234555555788899999998876542 2445666777777777643
No 276
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=34.13 E-value=1.9e+02 Score=29.61 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=39.7
Q ss_pred HhcHHHHHhc--CCeeEEeCCcccCc----CCchhHH----HHHHHHHHHHHHc-CCCeEE-----eehhhHhhhcCC
Q 012335 236 VANFDDVLAN--SDAFMVARGDLGME----IPIEKIF----LAQKVMIHKANIQ-GKPVVT-----ATQMLESMIKSP 297 (466)
Q Consensus 236 v~nideI~~~--sDgImiaRgDLg~e----~~~e~v~----~~qk~ii~~~~~~-gkPvi~-----ATqmLeSM~~~p 297 (466)
++-++..+++ +|+|.+. -|++.. ++.+..- -..|+|+...++. |+|+|. .+.+|+.|.+.+
T Consensus 158 i~y~~~qiea~Gad~I~i~-Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~~~~l~~~~e~g 234 (321)
T cd03309 158 LKLYERRIKHLEPDLLVYH-DDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAAASLVPSMAEMG 234 (321)
T ss_pred HHHHHHHHHHhCCCEEEEe-CCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCcHHHHHHHHHcC
Confidence 3344555544 7999985 334443 6654333 4558999999988 788877 446788877643
No 277
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=34.02 E-value=89 Score=31.14 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEe
Q 012335 25 EMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRT 81 (466)
Q Consensus 25 ~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~ 81 (466)
+..++|+++|+++.=+|+.-...++..++...++...+..+.| |.+|+.-|++.-
T Consensus 29 ~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~p--lsIDT~~~~v~e 83 (261)
T PRK07535 29 KLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVP--LCIDSPNPAAIE 83 (261)
T ss_pred HHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCC--EEEeCCCHHHHH
Confidence 4566789999999999998666677888888888887766655 677988766543
No 278
>PRK10812 putative DNAse; Provisional
Probab=33.91 E-value=3.2e+02 Score=27.13 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=59.8
Q ss_pred hcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEee-------cCHHHHhcHHHHHhcCCeeEEeCC
Q 012335 182 KDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKV-------ENLEGVANFDDVLANSDAFMVARG 254 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKI-------E~~~av~nideI~~~sDgImiaRg 254 (466)
.|.+.+.+.+.+.|+..++.+- .+.++...+.++..... . |++-+ .....++.+++++.. .=++|=|
T Consensus 20 ~d~~~vl~~a~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~-~--v~~~~GiHP~~~~~~~~~~~l~~~~~~--~~vvaIG 93 (265)
T PRK10812 20 KDVDDVLAKAAARDVKFCLAVA-TTLPGYRHMRDLVGERD-N--VVFSCGVHPLNQDEPYDVEELRRLAAE--EGVVAMG 93 (265)
T ss_pred cCHHHHHHHHHHcCCCEEEEeC-CCHHHHHHHHHHHhhCC-C--eEEEEEeCCCCCCChhHHHHHHHHhcC--CCEEEEE
Confidence 3555554778889998876665 35777777777655431 1 22211 123445566666543 2345557
Q ss_pred cccCcCCch-hHHHHH----HHHHHHHHHcCCCeEEee
Q 012335 255 DLGMEIPIE-KIFLAQ----KVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 255 DLg~e~~~e-~v~~~q----k~ii~~~~~~gkPvi~AT 287 (466)
..|.+.... .-...| ++.++.|++.++|+++-|
T Consensus 94 EiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~ 131 (265)
T PRK10812 94 ETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHT 131 (265)
T ss_pred eeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 888776421 123455 456677889999999865
No 279
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=33.84 E-value=1.5e+02 Score=27.91 Aligned_cols=90 Identities=14% Similarity=0.053 Sum_probs=50.5
Q ss_pred HHHHhccCcCCCcEEEE-----cCCCC-hhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeEEeCCccc
Q 012335 185 EDILNWGVPNKIDMIAL-----SFVRK-GSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFMVARGDLG 257 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~-----sfV~s-a~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgImiaRgDLg 257 (466)
+.+ +.+.+.|+|+|-+ +|+.+ +-..+.++++.........+--++-. ..+.++.+.++ +|++.|--+
T Consensus 20 ~~~-~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~~--- 93 (220)
T PRK05581 20 EEV-KAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVEN--PDRYVPDFAKAGADIITFHVE--- 93 (220)
T ss_pred HHH-HHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCC--HHHHHHHHHHcCCCEEEEeec---
Confidence 345 6678899999999 98854 22333443333221111112234433 33345666655 689776422
Q ss_pred CcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 258 MEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 258 ~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
.. ......++.+++.|..+++++
T Consensus 94 ----~~---~~~~~~~~~~~~~~~~~g~~~ 116 (220)
T PRK05581 94 ----AS---EHIHRLLQLIKSAGIKAGLVL 116 (220)
T ss_pred ----cc---hhHHHHHHHHHHcCCEEEEEE
Confidence 11 122455888999999888754
No 280
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=33.82 E-value=1.7e+02 Score=24.31 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
-+..+++++.+.|-+..+.+ -.+..+++-..-.|.|+++ +.+...++++-+.+...++||..
T Consensus 15 ~~~ki~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~Diil~~----------Pqv~~~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 15 LVKKMKKAAEKRGIDAEIEA-----VPESELEEYIDDADVVLLG----------PQVRYMLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred HHHHHHHHHHHCCCceEEEE-----ecHHHHHHhcCCCCEEEEC----------hhHHHHHHHHHHHhccCCCcEEE
Confidence 36678888988776644443 2444455555567888876 56777888898889999999875
No 281
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=33.80 E-value=97 Score=26.18 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=9.1
Q ss_pred hhhccCCCCEEEE
Q 012335 120 LAEDLRPGSVILC 132 (466)
Q Consensus 120 ~~~~v~~Gd~i~i 132 (466)
+...+++||+|++
T Consensus 73 ~~~~Lk~GD~V~l 85 (100)
T PF10844_consen 73 FTDGLKVGDKVLL 85 (100)
T ss_pred EecCCcCCCEEEE
Confidence 3456788888775
No 282
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.60 E-value=91 Score=31.47 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=48.6
Q ss_pred CCcccCCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEe--ecCHHHHhcHHHHHhc-C
Q 012335 170 PGVIVDLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSK--VENLEGVANFDDVLAN-S 246 (466)
Q Consensus 170 p~~~~~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaK--IE~~~av~nideI~~~-s 246 (466)
|+..+.+.. .+.+++ ..+++.|+|||.+.. -+.+++.++.+.+. .+++++|- | -.+|+.+++++ +
T Consensus 188 ~~~~I~VEv---~tleea-~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~---~~i~leAsGGI----t~~ni~~~a~tGv 255 (277)
T PRK05742 188 PGKPVEVEV---ESLDEL-RQALAAGADIVMLDE-LSLDDMREAVRLTA---GRAKLEASGGI----NESTLRVIAETGV 255 (277)
T ss_pred CCCeEEEEe---CCHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHHhC---CCCcEEEECCC----CHHHHHHHHHcCC
Confidence 444444432 345566 567899999999975 57888887776652 34555552 3 24788999988 8
Q ss_pred CeeEEeC
Q 012335 247 DAFMVAR 253 (466)
Q Consensus 247 DgImiaR 253 (466)
|+|-++.
T Consensus 256 D~Isvg~ 262 (277)
T PRK05742 256 DYISIGA 262 (277)
T ss_pred CEEEECh
Confidence 9998873
No 283
>PRK09389 (R)-citramalate synthase; Provisional
Probab=33.58 E-value=6.4e+02 Score=27.51 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=79.3
Q ss_pred CChhcHHHHHhccCcCCCcEEEEcC-CCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCee--EEeCC
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALSF-VRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAF--MVARG 254 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~sf-V~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgI--miaRg 254 (466)
+|..++..|.+...+.|+|.|=+.| +.+..|.+.++.+.. .+.+..|.+-.-.. .+.++..+++ .|.| +++-.
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~-~~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~S 97 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTD-EGLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTS 97 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHh-cCCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccC
Confidence 5667777775777889999998754 567888888877654 34567777766542 2335554443 4543 33333
Q ss_pred cccC----cCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhh
Q 012335 255 DLGM----EIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAA 311 (466)
Q Consensus 255 DLg~----e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naa 311 (466)
|+-. ....+++...-...++.|++.|..|.+.- ...++.+..-+.+++.++
T Consensus 98 d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 98 DLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG------EDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE------eeCCCCCHHHHHHHHHHH
Confidence 4311 12345555666778899999998877643 345666777777777773
No 284
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=33.55 E-value=3e+02 Score=26.14 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=39.4
Q ss_pred HHHHHhccCcCCCcEEEEc--CCCChh--hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEe
Q 012335 184 KEDILNWGVPNKIDMIALS--FVRKGS--DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVA 252 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~s--fV~sa~--dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImia 252 (466)
.+.+ +.+.+.|+|+|.+- ..+.++ .+.++.+.+.+.+ ++.+++.+.|++-.....+ .-+|.+.+.
T Consensus 82 ~~~~-~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~--~G~d~i~~~ 150 (219)
T cd04729 82 IEEV-DALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAK--LGFDIIGTT 150 (219)
T ss_pred HHHH-HHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHH--cCCCEEEcc
Confidence 3455 66788999987662 322233 6677776676666 6888887776553322221 125877653
No 285
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=33.54 E-value=89 Score=29.81 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=35.7
Q ss_pred hccCcCCCcEEEEcCC--------CChhhHHHHHHHHHhcCCCceEEE--eecCHHHHhcHHHHHhc-CCeeEEeCC
Q 012335 189 NWGVPNKIDMIALSFV--------RKGSDLVEVRNLLRVHAKNILLMS--KVENLEGVANFDDVLAN-SDAFMVARG 254 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV--------~sa~dv~~~r~~l~~~~~~~~Iia--KIE~~~av~nideI~~~-sDgImiaRg 254 (466)
..+.+.|+|++.+... ....+...++++.... ++++++ -|-++ +++.+.++. +||+++|+.
T Consensus 137 ~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~---~~~~~~l~~GadgV~vGsa 208 (219)
T cd04729 137 LNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSP---EQAAKALELGADAVVVGSA 208 (219)
T ss_pred HHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCH---HHHHHHHHCCCCEEEEchH
Confidence 3457789999965321 1223445555544332 456665 23222 566776766 899999965
No 286
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.51 E-value=2.2e+02 Score=30.54 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=70.3
Q ss_pred CcCCCcEEEEcCCCChhhHHHHHHHHHhcCC--------------CceEEEe---------------ecCHHHHhcHHHH
Q 012335 192 VPNKIDMIALSFVRKGSDLVEVRNLLRVHAK--------------NILLMSK---------------VENLEGVANFDDV 242 (466)
Q Consensus 192 ~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~--------------~~~IiaK---------------IE~~~av~nideI 242 (466)
...|+....+++|-.-+.-+.+++.|...+- ...|+|. -+...=++++++.
T Consensus 61 asLGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll~~~~~~ 140 (467)
T COG2870 61 ASLGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLLEKIKNA 140 (467)
T ss_pred HHcCCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHHHHHHHH
Confidence 4588888999999888888888888765331 1112221 1222334678888
Q ss_pred HhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhH----hhhcCCCCCHHHHHhHHHh
Q 012335 243 LANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLE----SMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 243 ~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLe----SM~~~p~PTRAEvsDv~na 310 (466)
++-.|++++. |.+- --+.. -+.||..||++|+||.+---==+ +=-+--.|.|+|..-+...
T Consensus 141 l~~~~~vVLS--DY~K----G~L~~-~q~~I~~ar~~~~pVLvDPKg~Df~~Y~GAtLiTPN~~E~~~~vg~ 205 (467)
T COG2870 141 LKSFDALVLS--DYAK----GVLTN-VQKMIDLAREAGIPVLVDPKGKDFEKYRGATLITPNLKEFEEAVGK 205 (467)
T ss_pred hhcCCEEEEe--cccc----ccchh-HHHHHHHHHHcCCcEEECCCCcchhhhCCCeecCCCHHHHHHHHcc
Confidence 8889999996 3322 11222 45789999999999998431111 0001127888888766554
No 287
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=33.46 E-value=29 Score=38.71 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=43.1
Q ss_pred HhcHHHHHhcCCeeEEeCCcccCcCC--chhHHHHHHHHHHHHHHc---CCCeEEeehhhHhhhcCCC
Q 012335 236 VANFDDVLANSDAFMVARGDLGMEIP--IEKIFLAQKVMIHKANIQ---GKPVVTATQMLESMIKSPR 298 (466)
Q Consensus 236 v~nideI~~~sDgImiaRgDLg~e~~--~e~v~~~qk~ii~~~~~~---gkPvi~ATqmLeSM~~~p~ 298 (466)
++|-|.|+ .|||||.|.-++. ..+=|...|+++..|-+. -.|.+ +|+|++|..-+.
T Consensus 595 i~~~dqIi-----fmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F--~~il~~l~~l~~ 655 (678)
T KOG0193|consen 595 IQNRDQII-----FMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLF--PQLLSKLEELLP 655 (678)
T ss_pred CCChhheE-----EEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCccH--HHHHHHHHHhhh
Confidence 45566676 7999999987774 357778999999999875 57888 899888765433
No 288
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=33.45 E-value=85 Score=34.41 Aligned_cols=28 Identities=32% Similarity=0.339 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCEEEEEEec
Q 012335 424 STEETIEFALQHAKAKGLCRPGDSVVALHRM 454 (466)
Q Consensus 424 ~~e~~i~~al~~~~~~G~~~~GD~VVvv~g~ 454 (466)
..|..++..++..... .+||.+|+++|.
T Consensus 236 ylEaairtV~qih~~e---e~GDilvFLtge 263 (699)
T KOG0925|consen 236 YLEAAIRTVLQIHMCE---EPGDILVFLTGE 263 (699)
T ss_pred HHHHHHHHHHHHHhcc---CCCCEEEEecCH
Confidence 3555566555554433 399999999986
No 289
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=33.40 E-value=71 Score=32.72 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=41.6
Q ss_pred cHHHHHhccCcCCCcEEEEcCCCCh-------hhHHHHHHHHHhcCCCceEEE--eecCHHHHhcHHHHHhc--CCeeEE
Q 012335 183 DKEDILNWGVPNKIDMIALSFVRKG-------SDLVEVRNLLRVHAKNILLMS--KVENLEGVANFDDVLAN--SDAFMV 251 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~sfV~sa-------~dv~~~r~~l~~~~~~~~Iia--KIE~~~av~nideI~~~--sDgImi 251 (466)
|..++.+.+.+.|+|+|.+.- ++. .+...++++-.. .+++||+ -|-+++ .+.+.++. +||+||
T Consensus 150 ~~~~~a~~le~~G~d~i~vh~-rt~~~~~~G~a~~~~i~~ik~~--~~iPVI~nGgI~s~~---da~~~l~~~gadgVmi 223 (321)
T PRK10415 150 NCVEIAQLAEDCGIQALTIHG-RTRACLFNGEAEYDSIRAVKQK--VSIPVIANGDITDPL---KARAVLDYTGADALMI 223 (321)
T ss_pred hHHHHHHHHHHhCCCEEEEec-CccccccCCCcChHHHHHHHHh--cCCcEEEeCCCCCHH---HHHHHHhccCCCEEEE
Confidence 443443556789999997754 322 345555554332 2466666 244433 33455543 899999
Q ss_pred eCCcccC
Q 012335 252 ARGDLGM 258 (466)
Q Consensus 252 aRgDLg~ 258 (466)
|||=|+-
T Consensus 224 GR~~l~n 230 (321)
T PRK10415 224 GRAAQGR 230 (321)
T ss_pred ChHhhcC
Confidence 9999874
No 290
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=33.33 E-value=3e+02 Score=27.37 Aligned_cols=68 Identities=10% Similarity=0.181 Sum_probs=38.4
Q ss_pred hhcHHHHHhccCcCCCcEEEEcC------------CCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc---
Q 012335 181 EKDKEDILNWGVPNKIDMIALSF------------VRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN--- 245 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~sf------------V~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~--- 245 (466)
..|..+..+.+.+.|+|+|=+.| -.+++.+.++-+.+.+. -+++|++|| ++ ..+++.+|++.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl-~~-~~~~~~~~a~~~~~ 177 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKL-TP-NVTDIVEIARAAEE 177 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEe-CC-CchhHHHHHHHHHH
Confidence 34444444566778999997744 24444444444444332 268899999 22 22345555442
Q ss_pred --CCeeEE
Q 012335 246 --SDAFMV 251 (466)
Q Consensus 246 --sDgImi 251 (466)
+|+|.+
T Consensus 178 ~G~d~i~~ 185 (296)
T cd04740 178 AGADGLTL 185 (296)
T ss_pred cCCCEEEE
Confidence 588765
No 291
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=33.16 E-value=1.6e+02 Score=30.49 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=44.8
Q ss_pred CChhcHHHHHhccCcCC--CcEEEEcC--CCChhhHHHHHHHHHhcCCCceEEEe-ecCHHHHhcHHHHHhcCCeeEEe
Q 012335 179 LTEKDKEDILNWGVPNK--IDMIALSF--VRKGSDLVEVRNLLRVHAKNILLMSK-VENLEGVANFDDVLANSDAFMVA 252 (466)
Q Consensus 179 lte~D~~di~~~~~~~~--~d~v~~sf--V~sa~dv~~~r~~l~~~~~~~~IiaK-IE~~~av~nideI~~~sDgImia 252 (466)
.++.|.+.+ ...++.| +|+|.+-- =.|..-++.++. +.+.-+.+.||++ +-+.+....+.+ .=+|+|.|+
T Consensus 91 ~t~e~~~r~-~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~ 165 (321)
T TIGR01306 91 VKACEYEFV-TQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHLPDSFVIAGNVGTPEAVRELEN--AGADATKVG 165 (321)
T ss_pred CCHHHHHHH-HHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhCCCCEEEEecCCCHHHHHHHHH--cCcCEEEEC
Confidence 477777777 5567778 69887654 222333333433 3333356779999 988887766654 237999988
No 292
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=33.07 E-value=59 Score=32.14 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=49.9
Q ss_pred cCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHH
Q 012335 191 GVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQK 270 (466)
Q Consensus 191 ~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk 270 (466)
+...|.++|-+--.+ ++ ...+...+.++ +...++ +..+.+++++..+|.+.|+.| |+.... ..
T Consensus 47 ~~~~g~~~v~~~~~~---~~---~~~i~~~~pe~-~~~~~~--~~~~~~~~~~~~~davvig~G-l~~~~~-------~~ 109 (272)
T TIGR00196 47 ALRAGAGLVTVAAPE---NV---ITLINSVSPEL-IVHRLG--WKVDEDEELLERYDVVVIGPG-LGQDPS-------FK 109 (272)
T ss_pred HHHhCCCeEEEEEch---hh---HHHHhhcCCEE-EEecch--hhHHHHHhhhccCCEEEEcCC-CCCCHH-------HH
Confidence 355688877665433 22 12233333222 223332 456777888888899999876 543222 56
Q ss_pred HHHHHHHHcCCCeEEeeh
Q 012335 271 VMIHKANIQGKPVVTATQ 288 (466)
Q Consensus 271 ~ii~~~~~~gkPvi~ATq 288 (466)
++++.+++.++|+++-+.
T Consensus 110 ~l~~~~~~~~~pvVlDa~ 127 (272)
T TIGR00196 110 KAVEEVLELDKPVVLDAD 127 (272)
T ss_pred HHHHHHHhcCCCEEEEhH
Confidence 788888899999988763
No 293
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=32.92 E-value=2.9e+02 Score=25.93 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=38.6
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeC
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVAR 253 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaR 253 (466)
..+.+.|+|+|.+..-.+. +.....+.+...| ..+..-+......+.+.++...+|.+.+..
T Consensus 78 ~~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 78 PDFAKAGADIITFHVEASE-HIHRLLQLIKSAG--IKAGLVLNPATPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred HHHHHcCCCEEEEeeccch-hHHHHHHHHHHcC--CEEEEEECCCCCHHHHHHHHhhCCEEEEEE
Confidence 4446899999988887663 3334444444444 444444432234667788888899887764
No 294
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=32.89 E-value=84 Score=32.20 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=45.7
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcC----------CCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc--CC
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSF----------VRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN--SD 247 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sf----------V~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~--sD 247 (466)
+..+...+.+...+.|+|+|-+|. +....++..++++-.. -+++|++ .+.....+.++++++. +|
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~--~~iPVi~-~G~i~t~~~a~~~l~~g~aD 315 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE--AGIPVIA-VGLITDPEQAEAILESGRAD 315 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh--CCCCEEE-eCCCCCHHHHHHHHHcCCCC
Confidence 344443442444568999999761 1122233333332211 2466665 5777777888888876 79
Q ss_pred eeEEeCCccc
Q 012335 248 AFMVARGDLG 257 (466)
Q Consensus 248 gImiaRgDLg 257 (466)
.|++||+=+.
T Consensus 316 ~V~~gR~~i~ 325 (336)
T cd02932 316 LVALGRELLR 325 (336)
T ss_pred eehhhHHHHh
Confidence 9999998765
No 295
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.88 E-value=37 Score=34.10 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=28.1
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 155 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~l 190 (271)
T PRK01185 155 TFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVI 190 (271)
T ss_pred EEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEE
Confidence 4578999999999999999998 4778888888
No 296
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=32.62 E-value=53 Score=32.58 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=28.5
Q ss_pred HhcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 347 NCIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 347 ~~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
.+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 130 ~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~i 166 (246)
T PRK04761 130 EELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLAL 166 (246)
T ss_pred EEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEE
Confidence 34578999999999999999998 4778888888
No 297
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=32.55 E-value=60 Score=29.97 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=36.7
Q ss_pred cEEEEEcCCchHH-----HHHHhcCC-CCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEc
Q 012335 352 ALILVLTRGGTTA-----KMVSKYRP-SMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLS 413 (466)
Q Consensus 352 ~~Ivv~T~sG~ta-----~~vSk~RP-~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~ 413 (466)
..=|+||..|.|| +++...+. .-.|+++ ++++.-++...-+|...+-.
T Consensus 67 gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VV--------------TSD~~iq~~~~~~GA~~iss 120 (166)
T PF05991_consen 67 GIEVVFTKEGETADDYIERLVRELKNRPRQVTVV--------------TSDREIQRAARGRGAKRISS 120 (166)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEE--------------eCCHHHHHHHhhCCCEEEcH
Confidence 4458999999998 55666665 5778888 46677777788999998744
No 298
>PRK10425 DNase TatD; Provisional
Probab=32.44 E-value=2.5e+02 Score=27.81 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=60.4
Q ss_pred hcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc-------CCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCC
Q 012335 182 KDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH-------AKNILLMSKVENLEGVANFDDVLANSDAFMVARG 254 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~-------~~~~~IiaKIE~~~av~nideI~~~sDgImiaRg 254 (466)
.|.+.+.+.+.+.|+..++..-+ +.++...+.++.... |-++.-+.. -+.+.++.+++++..- -++|=|
T Consensus 15 ~d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~-~~~~~~~~l~~~~~~~--~~vaIG 90 (258)
T PRK10425 15 KDRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQYPSCWSTAGVHPHDSSQ-WQAATEEAIIELAAQP--EVVAIG 90 (258)
T ss_pred ccHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCCCEEEEEEeCcCcccc-CCHHHHHHHHHhccCC--CEEEEe
Confidence 35555547778889887776654 467777777765543 112222111 1234455566665432 344557
Q ss_pred cccCcCCch-hHHHHH----HHHHHHHHHcCCCeEEee
Q 012335 255 DLGMEIPIE-KIFLAQ----KVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 255 DLg~e~~~e-~v~~~q----k~ii~~~~~~gkPvi~AT 287 (466)
..|.+.... .-...| ++.++.|.++++|+++-+
T Consensus 91 EiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~ 128 (258)
T PRK10425 91 ECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHC 128 (258)
T ss_pred eeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 777776531 223445 567888999999999866
No 299
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=32.36 E-value=4.1e+02 Score=28.13 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEE
Q 012335 335 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVL 412 (466)
Q Consensus 335 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l 412 (466)
.+.-+..++..+.+.+++.|++ ..||+++.-+|.| +-..|...+ +|+. ..... .......|+.-+.
T Consensus 101 KdRga~~~i~~a~~~g~~~Vv~-aSsGN~g~alA~~aa~~Gi~~~I~-vP~~---------~~~~~-~~~~~~~ga~vv~ 168 (398)
T TIGR03844 101 KELEALPTMQRLKERGGKTLVV-ASAGNTGRAFAEVSAITGQPVILV-VPKS---------SADRL-WTTEPASSVLLVT 168 (398)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEE-ECCC---------hHHHH-HHHhhCCcEEEEE
Confidence 4556666677777777775554 5679998877765 556777777 4521 01111 1112456766554
Q ss_pred cCCCCCCCCccCHHHHHHHHHHHHHHcCC
Q 012335 413 SSGSARASDEESTEETIEFALQHAKAKGL 441 (466)
Q Consensus 413 ~~~~~~~~~~~~~e~~i~~al~~~~~~G~ 441 (466)
+.. ++++..+.+.+.+++.|+
T Consensus 169 v~g--------~~d~a~~~a~~~a~~~g~ 189 (398)
T TIGR03844 169 VDG--------DYTDAIALADRIATLPGF 189 (398)
T ss_pred CCC--------CHHHHHHHHHHHHHhCCc
Confidence 432 344555555555555554
No 300
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=32.35 E-value=47 Score=32.15 Aligned_cols=104 Identities=14% Similarity=0.166 Sum_probs=65.5
Q ss_pred CCCChh-cHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCH-----HH-----HhcHHHHHhc
Q 012335 177 PTLTEK-DKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENL-----EG-----VANFDDVLAN 245 (466)
Q Consensus 177 p~lte~-D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~-----~a-----v~nideI~~~ 245 (466)
|.++.. |.+.+.+.+++.+++.|+++ +.-+...++.+...+..+.++.+...- .- +...++.++.
T Consensus 13 ~~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 13 GPMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred CCCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 344554 55555477888999999988 567777777775444456677776532 22 4455566654
Q ss_pred -CCeeEEe--CCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 246 -SDAFMVA--RGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 246 -sDgImia--RgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
+|+|-+- .|-++-+- ..++..--+++++.|+.+|.|+|+
T Consensus 89 GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIl 130 (236)
T PF01791_consen 89 GADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVIL 130 (236)
T ss_dssp T-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEE
Confidence 6755442 22222211 345666667999999999999986
No 301
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=32.34 E-value=1.9e+02 Score=27.60 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=44.6
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHH--hcHHHHHhc-CCeeEEeCCcccCcCCchhH
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGV--ANFDDVLAN-SDAFMVARGDLGMEIPIEKI 265 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av--~nideI~~~-sDgImiaRgDLg~e~~~e~v 265 (466)
..+.+.|+|||.+ |=.+.-....++++.+....+++++|- -|+ +|+.+.+++ +|++-++++=+......+++
T Consensus 118 ~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~~~~ipvvai----GGI~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i 192 (206)
T PRK09140 118 FAALRAGAQALKL-FPASQLGPAGIKALRAVLPPDVPVFAV----GGVTPENLAPYLAAGAAGFGLGSALYRPGQSAEEV 192 (206)
T ss_pred HHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhcCCCCeEEEE----CCCCHHHHHHHHHCCCeEEEEehHhcccccChHHH
Confidence 4567899999987 332333344444444332224666662 233 899999988 89998875443332233444
Q ss_pred HHHHHHH
Q 012335 266 FLAQKVM 272 (466)
Q Consensus 266 ~~~qk~i 272 (466)
...-+++
T Consensus 193 ~~~a~~~ 199 (206)
T PRK09140 193 AERARAF 199 (206)
T ss_pred HHHHHHH
Confidence 3333333
No 302
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.33 E-value=70 Score=34.84 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=35.1
Q ss_pred ecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Q 012335 16 TLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRT 59 (466)
Q Consensus 16 TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~ 59 (466)
-+|.+-...+.++.|+++|+++.=++.+||.-....++++.||+
T Consensus 221 av~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~ 264 (479)
T PRK07807 221 AVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRA 264 (479)
T ss_pred hhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHH
Confidence 34555567899999999999999999999997766666666664
No 303
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=32.30 E-value=86 Score=32.30 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=41.8
Q ss_pred hcHHHHHhccCcCCCcEEEEcCCCCh---------------hhHHHHHHHHHhcCCCceEEE--eecCHHHHhcHHHHHh
Q 012335 182 KDKEDILNWGVPNKIDMIALSFVRKG---------------SDLVEVRNLLRVHAKNILLMS--KVENLEGVANFDDVLA 244 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV~sa---------------~dv~~~r~~l~~~~~~~~Iia--KIE~~~av~nideI~~ 244 (466)
.+..++.+...+.|+|++.+. -|++ .+...++++- +.-.+++||+ -|-+++ .+.++++
T Consensus 151 ~~~~~~~~~l~~aG~d~i~vh-~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~-~~~~~iPVI~nGgI~s~e---da~~~l~ 225 (333)
T PRK11815 151 EFLCDFVDTVAEAGCDTFIVH-ARKAWLKGLSPKENREIPPLDYDRVYRLK-RDFPHLTIEINGGIKTLE---EAKEHLQ 225 (333)
T ss_pred HHHHHHHHHHHHhCCCEEEEc-CCchhhcCCCccccccCCCcCHHHHHHHH-HhCCCCeEEEECCcCCHH---HHHHHHh
Confidence 333344355678999999876 2332 2344444332 2223566666 344443 3444455
Q ss_pred cCCeeEEeCCcccC
Q 012335 245 NSDAFMVARGDLGM 258 (466)
Q Consensus 245 ~sDgImiaRgDLg~ 258 (466)
-+||||||||=|+-
T Consensus 226 ~aDgVmIGRa~l~n 239 (333)
T PRK11815 226 HVDGVMIGRAAYHN 239 (333)
T ss_pred cCCEEEEcHHHHhC
Confidence 69999999997764
No 304
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=32.29 E-value=1.6e+02 Score=24.07 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=35.2
Q ss_pred cEEeecch-hhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEe-------eCeEecCCCcccc
Q 012335 111 KMISMSYK-KLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCE-------NSAVLGERKNVNL 169 (466)
Q Consensus 111 ~~i~v~~~-~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~-------~gG~l~~~Kgvnl 169 (466)
-.+.+..+ ..+..+.+|+.|-+|. +.|.|.++. ++.+...+. +=|.++.+.-|||
T Consensus 20 ~~~~i~~~~~~~~~~~~g~SIavnG--vcLTV~~~~--~~~f~~~l~~eTl~~T~l~~~~~G~~VNl 82 (85)
T PF00677_consen 20 QRLRIEIPDKILSDLKIGGSIAVNG--VCLTVTDIN--EDWFEVDLIPETLRRTTLGNLKVGDRVNL 82 (85)
T ss_dssp EEEEEEESTGGGGTG-TTSEEEETT--EEEEEEEEE--TTEEEEEEEHHHHHCSSGGG--TTSEEEE
T ss_pred EEEEEEcCHHHHhhCccCcEEEECC--eeeEEEEec--CCEEEEechHHHhhhchhccCCCCCEEEE
Confidence 34555555 7788999999999987 788999986 556665543 2244455555554
No 305
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=32.28 E-value=24 Score=36.27 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=12.4
Q ss_pred cCcCCCcEEEEcCCCChhh
Q 012335 191 GVPNKIDMIALSFVRKGSD 209 (466)
Q Consensus 191 ~~~~~~d~v~~sfV~sa~d 209 (466)
+.+.|+++| .|||..-.|
T Consensus 165 aa~AGa~~I-SPFVgRi~d 182 (317)
T TIGR00874 165 CAEAKVTLI-SPFVGRILD 182 (317)
T ss_pred HHHcCCCEE-EeecchHhH
Confidence 456677655 788887655
No 306
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.01 E-value=1.1e+02 Score=31.86 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=54.6
Q ss_pred HHHHhccCcCCCcEEEEcCC------CChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc----CCeeEEeCC
Q 012335 185 EDILNWGVPNKIDMIALSFV------RKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN----SDAFMVARG 254 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~sfV------~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~----sDgImiaRg 254 (466)
+|. +.+.+.|+|+|.+|-- ..+..+..+.++....+.++.||+- -|+.+-.+|+++ +|++||||.
T Consensus 233 ~dA-~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr~ 307 (351)
T cd04737 233 EDA-DVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGRP 307 (351)
T ss_pred HHH-HHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECHH
Confidence 344 5568899999999631 2223345555554444456777773 466666666665 899999995
Q ss_pred cccC-----cCCch-hHHHHHHHHHHHHHHcCCC
Q 012335 255 DLGM-----EIPIE-KIFLAQKVMIHKANIQGKP 282 (466)
Q Consensus 255 DLg~-----e~~~e-~v~~~qk~ii~~~~~~gkP 282 (466)
=|-. +-+.+ -+-.+++++.......|.+
T Consensus 308 ~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 308 VLYGLALGGAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 5421 11122 3334555666665666654
No 307
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.97 E-value=82 Score=28.18 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=22.7
Q ss_pred hccCcCCCcEEEEcCCCC--hhhHHHHHHHHHhcC
Q 012335 189 NWGVPNKIDMIALSFVRK--GSDLVEVRNLLRVHA 221 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~s--a~dv~~~r~~l~~~~ 221 (466)
+.+.+.++|+|++|+..+ ...+.++.+.|.+.+
T Consensus 48 ~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~ 82 (137)
T PRK02261 48 DAAIETDADAILVSSLYGHGEIDCRGLREKCIEAG 82 (137)
T ss_pred HHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcC
Confidence 456889999999999655 344555555565553
No 308
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.95 E-value=1.2e+02 Score=30.73 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=46.0
Q ss_pred CChhcHHHHHhccCcCCCcEEEEcCCC--------------ChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHh
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALSFVR--------------KGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLA 244 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~sfV~--------------sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~ 244 (466)
++..|...+.+...+.|+|+|.++--. ...++..++.+-... +++|++ .+.....+++++.++
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~-~Ggi~t~~~a~~~l~ 301 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIA-VGGIRDPEVAEEILA 301 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEE-eCCCCCHHHHHHHHH
Confidence 455555555466678999999765321 122333333322221 456665 355556677788887
Q ss_pred c--CCeeEEeCCccc
Q 012335 245 N--SDAFMVARGDLG 257 (466)
Q Consensus 245 ~--sDgImiaRgDLg 257 (466)
. +|.|++||+=|.
T Consensus 302 ~g~aD~V~igR~~la 316 (327)
T cd02803 302 EGKADLVALGRALLA 316 (327)
T ss_pred CCCCCeeeecHHHHh
Confidence 6 799999998665
No 309
>COG1551 CsrA RNA-binding global regulator CsrA [Signal transduction mechanisms]
Probab=31.89 E-value=90 Score=25.07 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=21.2
Q ss_pred CCCCEEEEeCCeEEEEEEEEecCCCeEEE
Q 012335 125 RPGSVILCSDGTISLTVLDCAKELGLVRC 153 (466)
Q Consensus 125 ~~Gd~i~iddG~i~l~V~~v~~~~~~i~~ 153 (466)
+.|..|+|+| .|..+|++++ ++.+..
T Consensus 7 k~~Esi~Igd-dI~itVl~i~--gnqVki 32 (73)
T COG1551 7 KVGESIMIGD-DIEITVLSIK--GNQVKI 32 (73)
T ss_pred ecCceEEecC-CeEEEEEEEc--CCeEEE
Confidence 6899999999 5888999884 777764
No 310
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.85 E-value=47 Score=33.97 Aligned_cols=32 Identities=31% Similarity=0.304 Sum_probs=28.3
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 182 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~i 217 (306)
T PRK03372 182 SFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLV 217 (306)
T ss_pred EEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEE
Confidence 4578999999999999999998 4778889988
No 311
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=31.84 E-value=70 Score=30.84 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=29.4
Q ss_pred hccCcCCCcEEEEcCC--CChhhHHHHHHHHHhcCCCceEEE
Q 012335 189 NWGVPNKIDMIALSFV--RKGSDLVEVRNLLRVHAKNILLMS 228 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV--~sa~dv~~~r~~l~~~~~~~~Iia 228 (466)
+.+.+.++|+|++|+. .+..++.++.+.|.+.+.+++|+.
T Consensus 133 ~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~v 174 (213)
T cd02069 133 EAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLI 174 (213)
T ss_pred HHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEE
Confidence 5568899999999997 456667777777776666666553
No 312
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=31.76 E-value=3.5e+02 Score=29.59 Aligned_cols=178 Identities=20% Similarity=0.232 Sum_probs=93.5
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHh---------------------------------cCCCceE
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRV---------------------------------HAKNILL 226 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~---------------------------------~~~~~~I 226 (466)
+.+|...+.++..+.+-+...++.+++++.++.+.+++.. .|+ +.|
T Consensus 198 ~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gk-pvi 276 (480)
T cd00288 198 KASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGK-PVI 276 (480)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCC-CEE
Confidence 6788888865655566788899999999999998877641 121 223
Q ss_pred E------EeecCH-----HHHhcHHHHHhcCCeeEEe----CCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhH
Q 012335 227 M------SKVENL-----EGVANFDDVLANSDAFMVA----RGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLE 291 (466)
Q Consensus 227 i------aKIE~~-----~av~nideI~~~sDgImia----RgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLe 291 (466)
+ ++++++ |.-+=...++.-+||+|.+ .|. +|. +....+.+|+..+.+.- + .-..+.
T Consensus 277 ~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~----yPv-eaV~~m~~I~~~aE~~~-~---~~~~~~ 347 (480)
T cd00288 277 TATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGK----YPV-EAVKAMARICLEAEKAL-S---HRVLFN 347 (480)
T ss_pred EEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCC----CHH-HHHHHHHHHHHHHHhcc-c---hhhhhh
Confidence 3 233332 2333345566668999983 332 233 33455667777776431 0 000010
Q ss_pred -hhhcCCCC-CHHHHHhHHHhh-hhhccchhhHHHHHhhCCCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHH
Q 012335 292 -SMIKSPRP-TRAEATDVANAA-ENFINYGDLFKKIMETAPVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVS 368 (466)
Q Consensus 292 -SM~~~p~P-TRAEvsDv~naa-E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vS 368 (466)
.+...+.+ +. -..++.+| +.+.... .+.+... +. -...|..+|+-....-|+++|.+-+++|.++
T Consensus 348 ~~~~~~~~~~~~--~~aia~sAv~~A~~l~--akaIVv~-----T~---SG~TA~~lS~~RP~~pIiavT~~~~~~r~l~ 415 (480)
T cd00288 348 EMRRLTPRPTST--TEAVAMSAVRAAFELG--AKAIVVL-----TT---SGRTARLVSKYRPNAPIIAVTRNEQTARQLH 415 (480)
T ss_pred hhhcccccCCCh--HHHHHHHHHHHHHhcC--CCEEEEE-----CC---CcHHHHHHHhhCCCCCEEEEcCCHHHhhhee
Confidence 11111111 11 12233332 2111100 0000000 00 1123444555444455999999999999999
Q ss_pred hcCCCCCEEEE
Q 012335 369 KYRPSMPILSV 379 (466)
Q Consensus 369 k~RP~~PIiAv 379 (466)
=++--.|++.-
T Consensus 416 l~~GV~p~~~~ 426 (480)
T cd00288 416 LYRGVYPVLFE 426 (480)
T ss_pred eccCcEEEEec
Confidence 99987787553
No 313
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.71 E-value=48 Score=33.69 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=28.6
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 172 ~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~i 207 (295)
T PRK01231 172 SQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVL 207 (295)
T ss_pred EEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEE
Confidence 4578999999999999999999 5788898888
No 314
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=31.70 E-value=2.1e+02 Score=22.47 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcC
Q 012335 22 RSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTG 65 (466)
Q Consensus 22 ~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~ 65 (466)
++...+.+.++.| ++.=+||++-+.+..+++++.+.-+....+
T Consensus 10 ~D~~~i~~~l~~g-~~Vivnl~~l~~~~~~Ri~Dfl~G~~~al~ 52 (73)
T PF04472_consen 10 EDAREIVDALREG-KIVIVNLENLDDEEAQRILDFLSGAVYALD 52 (73)
T ss_dssp GGHHHHHHHHHTT---EEEE-TTS-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CEEEEECCCCCHHHHHHHHHHHhchheeeC
Confidence 5667788899999 777899999999999999999999887543
No 315
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=31.70 E-value=1.5e+02 Score=28.37 Aligned_cols=44 Identities=14% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCc
Q 012335 24 VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGIL 67 (466)
Q Consensus 24 ~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~ 67 (466)
.+.+++++++|+..+.|.--+.+.+++.+....+++..++++.+
T Consensus 22 ~~~l~~~l~~G~~~vqLR~k~~~~~~~~~la~~l~~~~~~~~~~ 65 (211)
T PRK03512 22 VQWIERLLDAGVRTLQLRIKDRRDEEVEADVVAAIALGRRYQAR 65 (211)
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCe
Confidence 46799999999999999999999999998999888888877654
No 316
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.56 E-value=66 Score=29.37 Aligned_cols=117 Identities=17% Similarity=0.142 Sum_probs=70.0
Q ss_pred hccCcCCCcEEEEcCCCChh------hHHHHHHHHHhcCCCceEEE-ee-----------c---CHHHHhcHHHHHhc--
Q 012335 189 NWGVPNKIDMIALSFVRKGS------DLVEVRNLLRVHAKNILLMS-KV-----------E---NLEGVANFDDVLAN-- 245 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~------dv~~~r~~l~~~~~~~~Iia-KI-----------E---~~~av~nideI~~~-- 245 (466)
+++.+.|+++|-+.+..... ++.++++++.+.|-.+.-+. .. + ..++++.+.+.++.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 45677899998888765533 47788999988764322111 11 1 13346677777666
Q ss_pred ---CCeeEEeCC--cccCcCC----chhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCH---HHHHhHHHh
Q 012335 246 ---SDAFMVARG--DLGMEIP----IEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTR---AEATDVANA 310 (466)
Q Consensus 246 ---sDgImiaRg--DLg~e~~----~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTR---AEvsDv~na 310 (466)
++.+.+..| +...... .+.+...-+++...|.+.|.-+. ||.+-.....+. .++-++...
T Consensus 82 ~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~-----lE~~~~~~~~~~~~~~~~~~~l~~ 153 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA-----LENHPGPFSETPFSVEEIYRLLEE 153 (213)
T ss_dssp HHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE-----EE-SSSSSSSEESSHHHHHHHHHH
T ss_pred HhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE-----EecccCccccchhhHHHHHHHHhh
Confidence 477888877 3333333 34666666888888888895544 444444444444 555555554
No 317
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.55 E-value=1.3e+02 Score=31.21 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCH
Q 012335 9 PKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSH 47 (466)
Q Consensus 9 r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~ 47 (466)
+++|+.+-+=|...+.+-++...++|++++|+-+ |.+.
T Consensus 76 ~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~-~~~e 113 (337)
T PRK08195 76 KQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVAT-HCTE 113 (337)
T ss_pred CCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEE-ecch
Confidence 4688887565766678899999999999999965 5554
No 318
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.52 E-value=48 Score=33.92 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=28.5
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~i 213 (305)
T PRK02649 178 DIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQL 213 (305)
T ss_pred EEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEE
Confidence 4578999999999999999999 5788888888
No 319
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=31.50 E-value=42 Score=36.71 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=28.8
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
...++.++|-|.||+||..+|. ..|.++.+.+
T Consensus 377 ~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivl 412 (508)
T PLN02935 377 CVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILF 412 (508)
T ss_pred EEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEE
Confidence 4578999999999999999998 5789999998
No 320
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=31.30 E-value=1.3e+02 Score=29.23 Aligned_cols=71 Identities=15% Similarity=0.310 Sum_probs=40.0
Q ss_pred cCcCCCcEEEEcCCCChhh--------HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCc
Q 012335 191 GVPNKIDMIALSFVRKGSD--------LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPI 262 (466)
Q Consensus 191 ~~~~~~d~v~~sfV~sa~d--------v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~ 262 (466)
|...|++|| .|||..-+| +.+++++++..+.+.+|++ .+++|.++++
T Consensus 120 Aa~aGa~yI-spyvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILa-----AS~r~~~~v~------------------- 174 (220)
T PRK12653 120 SALAGAEYV-APYVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLA-----ASFKTPRQAL------------------- 174 (220)
T ss_pred HHhcCCcEE-EeecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEE-----EecCCHHHHH-------------------
Confidence 456899976 788877655 2233333333333444443 2344444443
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEee-hhhHhhhcCCC
Q 012335 263 EKIFLAQKVMIHKANIQGKPVVTAT-QMLESMIKSPR 298 (466)
Q Consensus 263 e~v~~~qk~ii~~~~~~gkPvi~AT-qmLeSM~~~p~ 298 (466)
.|-.+|.-+++.+ .+|+.|.++|.
T Consensus 175 ------------~~~~~G~d~vTip~~vl~~l~~~p~ 199 (220)
T PRK12653 175 ------------DCLLAGCESITLPLDVAQQMISYPA 199 (220)
T ss_pred ------------HHHHcCCCEEECCHHHHHHHHcCCc
Confidence 2334666666443 78888887775
No 321
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=31.26 E-value=2e+02 Score=27.83 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=38.9
Q ss_pred HHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHHHHcCCc
Q 012335 24 VEMAEKLLRAG-MNVARFNFSHGSHAYHQETLDNLRTAMNNTGIL 67 (466)
Q Consensus 24 ~~~l~~li~~G-~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~ 67 (466)
.+.+++.++.| ++.+-|-.-+.+..++.++.+.++..++++|.+
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~ 73 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAA 73 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCE
Confidence 46889999999 799999999999999999999999998888754
No 322
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=31.04 E-value=2.7e+02 Score=26.96 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceE
Q 012335 24 VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCA 69 (466)
Q Consensus 24 ~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~ 69 (466)
.+.+++.++.|++++=|---..+.+++.+..+.+|..+++++.++-
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~li 69 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLI 69 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEE
Confidence 6899999999999999999988888888899999999998886543
No 323
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=31.03 E-value=1.6e+02 Score=30.74 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=42.2
Q ss_pred cEEeecchhhhhccCCCCEEEEeC---------------CeEEEEEEEEecCCCeEEEEEeeCeEecCCCccccCC
Q 012335 111 KMISMSYKKLAEDLRPGSVILCSD---------------GTISLTVLDCAKELGLVRCRCENSAVLGERKNVNLPG 171 (466)
Q Consensus 111 ~~i~v~~~~~~~~v~~Gd~i~idd---------------G~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kgvnlp~ 171 (466)
+.....+.+|.+.+++||.+.++| |++++-+.+.. +++...|.+..++.++.+.-+.+++
T Consensus 36 ~i~h~~F~~l~~~L~~GDlLV~NdTkVipARL~g~k~tG~~vEvlll~~~-~~~~w~~l~~~~k~~~~G~~l~~~~ 110 (341)
T PF02547_consen 36 EIEHRRFRDLPDYLRPGDLLVFNDTKVIPARLFGQKETGGKVEVLLLRPL-DDNRWEALVKPSKKLKPGEVLFFDD 110 (341)
T ss_dssp EEEEEEGGGGGGG--TTEEEEEEEEEE-SEEEEEEETTS-EEEEEEEEEE-CTTEEEEEECTGCCS-TTEEEEETT
T ss_pred cEeeeeHhHHHHhhCCCCEEEEeCCEEEeeEEEEEecCCCEEEEEEEEEC-CCCchhhhhhccCCCCCCCEEEeCC
Confidence 455567889999999999999984 77777776654 3556788888888888877777755
No 324
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=30.90 E-value=1.8e+02 Score=28.61 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=38.6
Q ss_pred CeEEEEecCCCC-CCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 012335 10 KTKIVCTLGPAS-RSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTK 75 (466)
Q Consensus 10 ~tkIi~TiGp~~-~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~ 75 (466)
+..+-+|+|..+ ...+.++++.+.|.+.|.+-+...+.+.-.+.++.+| +..|..+.+++|-.
T Consensus 72 ~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~vr---~~~g~~~~l~vDaN 135 (263)
T cd03320 72 RIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVGATSFEEDLARLRALR---EALPADAKLRLDAN 135 (263)
T ss_pred CcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEECCCChHHHHHHHHHHH---HHcCCCCeEEEeCC
Confidence 455667776543 2335677788899999999987655554334455554 44444455555543
No 325
>PRK05638 threonine synthase; Validated
Probab=30.83 E-value=3.1e+02 Score=29.25 Aligned_cols=47 Identities=30% Similarity=0.314 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEEEec
Q 012335 334 PLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSVIVP 382 (466)
Q Consensus 334 ~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv~~~ 382 (466)
.-+..+..++..|.+.+++.|++ ..||+++..+|.| +-..|.+.+ +|
T Consensus 95 fKdR~a~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~-vp 143 (442)
T PRK05638 95 FRDRLATVAVSYGLPYAANGFIV-ASDGNAAASVAAYSARAGKEAFVV-VP 143 (442)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEE-Ee
Confidence 34556666666677778887666 5678988877665 456777777 44
No 326
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.61 E-value=1.5e+02 Score=26.44 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=37.4
Q ss_pred hcHHHHHh-cCCeeEE--eCCcccCcCCchhHHHHHHHHHHHHHH--cCCCeEEee
Q 012335 237 ANFDDVLA-NSDAFMV--ARGDLGMEIPIEKIFLAQKVMIHKANI--QGKPVVTAT 287 (466)
Q Consensus 237 ~nideI~~-~sDgImi--aRgDLg~e~~~e~v~~~qk~ii~~~~~--~gkPvi~AT 287 (466)
+++++++. ..|-|++ |-.|+....+.+++..-.+.++..+++ .+.+|++.|
T Consensus 39 ~~l~~~~~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~ 94 (169)
T cd01828 39 ARLDEDVALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQS 94 (169)
T ss_pred HHHHHHhccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 34444442 2475554 555988777888888889999999999 788999876
No 327
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.57 E-value=5.7e+02 Score=25.68 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=59.3
Q ss_pred CCCChhcHHHHH-------hccCcCCCcEEEEcCC-------------CChhh----------------HHHHHHHHHhc
Q 012335 177 PTLTEKDKEDIL-------NWGVPNKIDMIALSFV-------------RKGSD----------------LVEVRNLLRVH 220 (466)
Q Consensus 177 p~lte~D~~di~-------~~~~~~~~d~v~~sfV-------------~sa~d----------------v~~~r~~l~~~ 220 (466)
..||..|++.+. +.+.+.|+|+|=+-.- +...| ++++|+ ..
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~---~~ 205 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVRE---AV 205 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHH---Hc
Confidence 468888887763 3567799999876543 22222 333333 33
Q ss_pred CCCceEEEeecCH----------HHHhcHHHHHhc-CCeeEEeCCcccCcCCc----hhHHHHHHHHHHHH-HHcCCCeE
Q 012335 221 AKNILLMSKVENL----------EGVANFDDVLAN-SDAFMVARGDLGMEIPI----EKIFLAQKVMIHKA-NIQGKPVV 284 (466)
Q Consensus 221 ~~~~~IiaKIE~~----------~av~nideI~~~-sDgImiaRgDLg~e~~~----e~v~~~qk~ii~~~-~~~gkPvi 284 (466)
|.+..|..||--. ++++-++.+.+. .|.|-+..|+..-.... ..-+......++.. ...+.|++
T Consensus 206 g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi 285 (327)
T cd02803 206 GPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVI 285 (327)
T ss_pred CCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEE
Confidence 5678899998632 223333344433 68998887765321110 00011222333333 33488988
Q ss_pred Eeehh
Q 012335 285 TATQM 289 (466)
Q Consensus 285 ~ATqm 289 (466)
....+
T Consensus 286 ~~Ggi 290 (327)
T cd02803 286 AVGGI 290 (327)
T ss_pred EeCCC
Confidence 76654
No 328
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=30.53 E-value=1.4e+02 Score=29.44 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=13.9
Q ss_pred EEEcCCchHHHHHHhcCCCCCEEEE
Q 012335 355 LVLTRGGTTAKMVSKYRPSMPILSV 379 (466)
Q Consensus 355 vv~T~sG~ta~~vSk~RP~~PIiAv 379 (466)
.+|=.+|+|+..++++-|..++-.+
T Consensus 96 ~Ifld~GsT~~~la~~L~~~~ltVv 120 (251)
T PRK13509 96 SVVINCGSTAFLLGRELCGKPVQII 120 (251)
T ss_pred EEEECCcHHHHHHHHHhCCCCeEEE
Confidence 4444556666666666555554444
No 329
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=30.47 E-value=3e+02 Score=22.61 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=40.2
Q ss_pred CcEEecCCCEEEEEeCCCCCCCccEEee-cchhhhhccCCCCEEEEe--CCeEEEEEEEEec-CCCeEEEEEeeC-eEec
Q 012335 88 KPIQLVQGQEITISTDYSLKGDEKMISM-SYKKLAEDLRPGSVILCS--DGTISLTVLDCAK-ELGLVRCRCENS-AVLG 162 (466)
Q Consensus 88 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v-~~~~~~~~v~~Gd~i~id--dG~i~l~V~~v~~-~~~~i~~~v~~g-G~l~ 162 (466)
..+.++.|+.++|.....-.-....-|. +- +.++.++.+.+. ++.-.|.+.++.. +.+...|++.|. |...
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg----~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~ 83 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFR----KQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQ 83 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECC----EEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCcee
Confidence 3588999999999987431111223332 22 223445544433 4555677766543 345688888763 4443
Q ss_pred C
Q 012335 163 E 163 (466)
Q Consensus 163 ~ 163 (466)
.
T Consensus 84 ~ 84 (98)
T cd05762 84 A 84 (98)
T ss_pred E
Confidence 3
No 330
>PRK08227 autoinducer 2 aldolase; Validated
Probab=30.46 E-value=5.7e+02 Score=25.63 Aligned_cols=147 Identities=16% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecC----------HHHHhcHHHHHh
Q 012335 175 DLPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVEN----------LEGVANFDDVLA 244 (466)
Q Consensus 175 ~lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~----------~~av~nideI~~ 244 (466)
+++.|..-+.. + ....+ |+|.++++ .-+-+.......++.+|.|+-. ..-+-..++-++
T Consensus 37 p~~gl~~~~~~-~-~~i~~-~~da~~~~--------~G~~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvr 105 (264)
T PRK08227 37 PTTGLERIDIN-I-APLFP-YADVLMCT--------RGILRSVVPPATNKPVVLRASGGNSILKELSNEAVAVDMEDAVR 105 (264)
T ss_pred CCccccChHHH-H-HHHhh-cCCEEEeC--------hhHHHhcccccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHH
Q ss_pred c-CCeeEEeCCcccCcCCch---hHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhhhhccchhh
Q 012335 245 N-SDAFMVARGDLGMEIPIE---KIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAAENFINYGDL 320 (466)
Q Consensus 245 ~-sDgImiaRgDLg~e~~~e---~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE~~~~~~~~ 320 (466)
. +|++-+- +-+|-+ +...--.++...|.+.|.|++. +.
T Consensus 106 lGAdAV~~~-----v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla---~~------------------------------ 147 (264)
T PRK08227 106 LNACAVAAQ-----VFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA---VT------------------------------ 147 (264)
T ss_pred CCCCEEEEE-----EecCCHHHHHHHHHHHHHHHHHHHhCCcEEE---Ee------------------------------
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEE
Q 012335 321 FKKIMETAPVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILS 378 (466)
Q Consensus 321 ~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~~PIiA 378 (466)
...+.-.+..+ +...|+++|-+++|+ ||=...+|.+-..+-.--| +||+.
T Consensus 148 -----prG~~~~~~~~-~ia~aaRiaaELGAD-iVK~~y~~~~f~~vv~a~~-vPVvi 197 (264)
T PRK08227 148 -----AVGKDMVRDAR-YFSLATRIAAEMGAQ-IIKTYYVEEGFERITAGCP-VPIVI 197 (264)
T ss_pred -----cCCCCcCchHH-HHHHHHHHHHHHcCC-EEecCCCHHHHHHHHHcCC-CcEEE
No 331
>PLN02535 glycolate oxidase
Probab=30.34 E-value=84 Score=33.03 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=41.9
Q ss_pred hccCcCCCcEEEEcCCCC------hhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc----CCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALSFVRK------GSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN----SDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~s------a~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~----sDgImiaRgDLg 257 (466)
+.+.+.|+|+|.+|-..- ..-+..+.++....+.++.||+- -|+.+-.+|+++ +|+++|||.=|-
T Consensus 238 ~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~d----GGIr~g~Dv~KALalGA~aV~vGr~~l~ 312 (364)
T PLN02535 238 IKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLD----GGVRRGTDVFKALALGAQAVLVGRPVIY 312 (364)
T ss_pred HHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEee----CCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 456789999999983211 11234444443333445777762 577777777776 799999987763
No 332
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=30.31 E-value=1.6e+02 Score=28.97 Aligned_cols=95 Identities=11% Similarity=0.133 Sum_probs=52.2
Q ss_pred hccCcCCCcEEEEcCCC---------ChhhHHHHHHHHHhc-CCCceEEEe----e------cCHHHHhcHHHHHhc---
Q 012335 189 NWGVPNKIDMIALSFVR---------KGSDLVEVRNLLRVH-AKNILLMSK----V------ENLEGVANFDDVLAN--- 245 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~---------sa~dv~~~r~~l~~~-~~~~~IiaK----I------E~~~av~nideI~~~--- 245 (466)
+++.+.|+|+|-+.+-. +.+++.++++.+.+. +..+.+.+- . +...+++.+...++.
T Consensus 17 ~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~ 96 (279)
T cd00019 17 KRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEE 96 (279)
T ss_pred HHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77899999998665321 458899999999887 433332221 1 233455556666555
Q ss_pred --CCeeEEeCCcccCcCCc----hhHHHHHHHHHHHHHHcCCCeE
Q 012335 246 --SDAFMVARGDLGMEIPI----EKIFLAQKVMIHKANIQGKPVV 284 (466)
Q Consensus 246 --sDgImiaRgDLg~e~~~----e~v~~~qk~ii~~~~~~gkPvi 284 (466)
++.+.+-.|-... .+. +.+...-+++...+.+.|..+.
T Consensus 97 lG~~~v~~~~g~~~~-~~~~~~~~~~~~~l~~l~~~a~~~gi~l~ 140 (279)
T cd00019 97 LGIRLLVFHPGSYLG-QSKEEGLKRVIEALNELIDKAETKGVVIA 140 (279)
T ss_pred cCCCEEEECCCCCCC-CCHHHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 3555554443211 111 2333444455555555565544
No 333
>KOG2618 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.28 E-value=52 Score=33.69 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=37.2
Q ss_pred CccCcEEEEcCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec
Q 012335 404 IFRALVPVLSSGSARASDEESTEETIEFALQHAKAKGLCRPGDSVVALHRM 454 (466)
Q Consensus 404 L~~GV~P~l~~~~~~~~~~~~~e~~i~~al~~~~~~G~~~~GD~VVvv~g~ 454 (466)
+-||++|+......+.........+.+..++...=++.++.|--||++.|+
T Consensus 80 MrWGLVPfwtK~d~~~~~f~tfNaRlE~lmEsksfrrpl~KgRCvVl~dGf 130 (366)
T KOG2618|consen 80 MRWGLVPFWTKDDSQFKTFRTFNARLENLMESKSFRRPLEKGRCVVLMDGF 130 (366)
T ss_pred eeeccccceecCCccccceeecccchHHHHhhhhhhccCCCCcEEEEecce
Confidence 589999998876544433344555666666666777889999888888886
No 334
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=30.19 E-value=6.6e+02 Score=26.31 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCcEEEEEcCCchHHHHHHhcCC-CCCEEEEEec
Q 012335 341 SAVRTANCIKAALILVLTRGGTTAKMVSKYRP-SMPILSVIVP 382 (466)
Q Consensus 341 ~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP-~~PIiAv~~~ 382 (466)
.++.+|+..+++..++-..|+.+..++.+.|. ..+|.+=|+|
T Consensus 203 ~~~~la~~~~~~~~i~Hvs~~~~l~~i~~a~~~g~~v~~ev~p 245 (411)
T TIGR00857 203 RLLELAKHAGCPVHICHISTKESLELIVKAKSQGIKITAEVTP 245 (411)
T ss_pred HHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEeech
Confidence 45567788888888888888888877765553 3466655444
No 335
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=30.02 E-value=1.6e+02 Score=27.87 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=23.9
Q ss_pred CeEEEEecCCCCCCHH----HHHHHHHhCCceEEEecCC
Q 012335 10 KTKIVCTLGPASRSVE----MAEKLLRAGMNVARFNFSH 44 (466)
Q Consensus 10 ~tkIi~TiGp~~~~~~----~l~~li~~G~~v~RiN~sh 44 (466)
...+++.|+-. +++ ..+.+.++|.+.+=||++|
T Consensus 54 ~~p~~~qi~g~--~~~~~~~aa~~~~~aG~d~ieln~g~ 90 (231)
T cd02801 54 ERPLIVQLGGS--DPETLAEAAKIVEELGADGIDLNMGC 90 (231)
T ss_pred CCCEEEEEcCC--CHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 56788888632 333 4445667799999999998
No 336
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.00 E-value=52 Score=33.09 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=28.3
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 162 ~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~v 197 (277)
T PRK03708 162 EVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILI 197 (277)
T ss_pred EEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEE
Confidence 4578999999999999999998 4778888888
No 337
>PLN03034 phosphoglycerate kinase; Provisional
Probab=29.84 E-value=64 Score=35.10 Aligned_cols=205 Identities=18% Similarity=0.233 Sum_probs=114.7
Q ss_pred HHHHHHHHHhCCceEEEecCCCC-H---HHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCCCcEEecCCCEEE
Q 012335 24 VEMAEKLLRAGMNVARFNFSHGS-H---AYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDGKPIQLVQGQEIT 99 (466)
Q Consensus 24 ~~~l~~li~~G~~v~RiN~shg~-~---~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~ 99 (466)
...|+.|++.|..+.= +||-. + +....+-.-.+..++.++++|...=|.-||+.+- .+ -.|++|+.+.
T Consensus 121 lpTI~~L~~~gakvVl--~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~fv~d~~G~~~~~-~i-----~~l~~GeVlL 192 (481)
T PLN03034 121 IPTIKYLISNGAKVIL--SSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEK-LV-----ASLPEGGVLL 192 (481)
T ss_pred HHHHHHHHHCCCeEEE--EEecCCCCCCCcccCHHHHHHHHHHHhCCCeEECCCCCCHHHHH-HH-----hcCCCCcEEE
Confidence 3489999999988654 48833 3 2222344444555667899999888999988763 12 1466777766
Q ss_pred EEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCccccCCcccCCCCC
Q 012335 100 ISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKNVNLPGVIVDLPTL 179 (466)
Q Consensus 100 l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kgvnlp~~~~~lp~l 179 (466)
|-.---..++. -|.++|.+.+.+.-.||++|. |-+- +...-+++ | +|.. +|
T Consensus 193 LENvRF~~eE~----~nd~~fa~~LA~l~DiyVNDA---Fgta--HR~haS~v-------------G--i~~~---l~-- 243 (481)
T PLN03034 193 LENVRFYKEEE----KNEPEFAKKLASLADLYVNDA---FGTA--HRAHASTE-------------G--VTKF---LK-- 243 (481)
T ss_pred EeccCcCcccc----cCcHHHHHHHHhhCCEEEecc---hhhh--Hhcccchh-------------h--hhhh---cC--
Confidence 64321011111 155678888877666999993 2211 10000000 0 1100 00
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCce--EE--EeecCHHHHhcHHHHHhcCCeeEEeCC-
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNIL--LM--SKVENLEGVANFDDVLANSDAFMVARG- 254 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~--Ii--aKIE~~~av~nideI~~~sDgImiaRg- 254 (466)
.. +...-+ .+++..+.+.+..- +++. |+ ||+.++-++ ++.++..+|.+++|=|
T Consensus 244 -------------ps---~aG~Lm---ekEl~~L~k~~~~p-~rP~vaIlGGaKVsdKI~v--i~~Ll~kvD~lliGG~m 301 (481)
T PLN03034 244 -------------PS---VAGFLL---QKELDYLVGAVSNP-KRPFAAIVGGSKVSSKIGV--IESLLEKCDILLLGGGM 301 (481)
T ss_pred -------------cc---hhhHHH---HHHHHHHHHHHcCC-CCceEEEEcCccHHhHHHH--HHHHHHhcCEEEECcHH
Confidence 00 000000 23455555555321 2222 22 577776555 7778888999999832
Q ss_pred ------cccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 255 ------DLGMEIPI----EKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 255 ------DLg~e~~~----e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-+|.++|. ++....-++|++++.+.|+.+++-.
T Consensus 302 a~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~lPv 344 (481)
T PLN03034 302 IFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPT 344 (481)
T ss_pred HHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEECCc
Confidence 24666654 3445556799999999998776533
No 338
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=29.79 E-value=90 Score=31.91 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=38.4
Q ss_pred hccCcCCCcEEEEcCCCChh--------hHHHHHHHHHhcCCCceEEE--eecCHHHHhcHHHHHhc--CCeeEEeCCcc
Q 012335 189 NWGVPNKIDMIALSFVRKGS--------DLVEVRNLLRVHAKNILLMS--KVENLEGVANFDDVLAN--SDAFMVARGDL 256 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~--------dv~~~r~~l~~~~~~~~Iia--KIE~~~av~nideI~~~--sDgImiaRgDL 256 (466)
+.+.+.|+|+|.++- |+.. |...++++-.. -+++||+ -|.|+ +...++++. +||||||||=|
T Consensus 155 ~~l~~~Gvd~i~Vh~-Rt~~~~y~g~~~~~~~i~~ik~~--~~iPVi~nGdI~t~---~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 155 DAVQQAGATELVVHG-RTKEDGYRAEHINWQAIGEIRQR--LTIPVIANGEIWDW---QSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHHHhcCCCEEEECC-CCCccCCCCCcccHHHHHHHHhh--cCCcEEEeCCcCCH---HHHHHHHhccCCCEEEEcHHhH
Confidence 556789999999952 3322 33333333222 2466666 34444 344555543 89999999977
Q ss_pred cC
Q 012335 257 GM 258 (466)
Q Consensus 257 g~ 258 (466)
+-
T Consensus 229 ~n 230 (312)
T PRK10550 229 NI 230 (312)
T ss_pred hC
Confidence 64
No 339
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=29.71 E-value=4.3e+02 Score=26.57 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=55.7
Q ss_pred hcHHHHHhccCcCCCcEEEEcCC---------------CChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-
Q 012335 182 KDKEDILNWGVPNKIDMIALSFV---------------RKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN- 245 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV---------------~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~- 245 (466)
.|..+..+.+.+.|+|+|-+.+- ++++.+.++-+.+.+. .+++|++||- + .+.++.++++.
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~-~-~~~~~~~~a~~~ 189 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLT-P-NITDIREIARAA 189 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECC-C-CchhHHHHHHHH
Confidence 44444434445568888776332 2233444443334322 3689999994 2 34466666663
Q ss_pred ----CCeeEEe-----CCcc-----------------cCcCCchhHHHHHHHHHHHHHHc--CCCeEEeehhh
Q 012335 246 ----SDAFMVA-----RGDL-----------------GMEIPIEKIFLAQKVMIHKANIQ--GKPVVTATQML 290 (466)
Q Consensus 246 ----sDgImia-----RgDL-----------------g~e~~~e~v~~~qk~ii~~~~~~--gkPvi~ATqmL 290 (466)
+|||.+. |-++ |.=-+....|...+.+-...+.. ..|+|-..-+.
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~ 262 (299)
T cd02940 190 KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE 262 (299)
T ss_pred HHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC
Confidence 5888742 1111 10011223455566666666666 68888766543
No 340
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=29.62 E-value=1.6e+02 Score=25.60 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=30.6
Q ss_pred chhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEec
Q 012335 117 YKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLG 162 (466)
Q Consensus 117 ~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~ 162 (466)
+.++.+.+++||+|.--.|-. -+|.+++ ++.+..++-.|-.++
T Consensus 32 ~~~m~~~Lk~GD~VvT~gGi~-G~V~~I~--d~~v~leia~gv~i~ 74 (109)
T PRK05886 32 TIDLHESLQPGDRVHTTSGLQ-ATIVGIT--DDTVDLEIAPGVVTT 74 (109)
T ss_pred HHHHHHhcCCCCEEEECCCeE-EEEEEEe--CCEEEEEECCCeEEE
Confidence 356788999999999988865 4567775 467777665555553
No 341
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.61 E-value=54 Score=33.36 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=28.3
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~i 213 (296)
T PRK04539 178 TQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTL 213 (296)
T ss_pred EEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEE
Confidence 3468999999999999999998 5788888888
No 342
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=29.60 E-value=70 Score=31.07 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=46.7
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHH--hcCCeeEEeCCcccCcCCc
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVL--ANSDAFMVARGDLGMEIPI 262 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~--~~sDgImiaRgDLg~e~~~ 262 (466)
+...+.|+|+|.+-+--+.+.+.+.-+.+++.|..+.|--.-++ .++.+.+++ ...|.|++ ++++-|.
T Consensus 82 ~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~----m~v~pG~ 151 (228)
T PTZ00170 82 DDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV----MTVEPGF 151 (228)
T ss_pred HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh----hhcccCC
Confidence 44578999999886543433377777777777765555545444 688889998 66788875 6666554
No 343
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=29.58 E-value=4.6e+02 Score=27.40 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=65.5
Q ss_pred ChhcHHHHHhccCcC--CCcEEEEcCC--CChhhHHHHHHHHHhcCCCceEEEe-ecCHHHHhcHHHHHhcCCeeEEeCC
Q 012335 180 TEKDKEDILNWGVPN--KIDMIALSFV--RKGSDLVEVRNLLRVHAKNILLMSK-VENLEGVANFDDVLANSDAFMVARG 254 (466)
Q Consensus 180 te~D~~di~~~~~~~--~~d~v~~sfV--~sa~dv~~~r~~l~~~~~~~~IiaK-IE~~~av~nideI~~~sDgImiaRg 254 (466)
++.|.+-+ +..++. ++|+|.+--. .|...++.+ +.+++.-.+..||+= |-|+++.+++-+ .=+|+|.|+=|
T Consensus 105 ~~~d~er~-~~L~~a~~~~d~iviD~AhGhs~~~i~~i-k~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiG 180 (343)
T TIGR01305 105 SDNDLEKM-TSILEAVPQLKFICLDVANGYSEHFVEFV-KLVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIG 180 (343)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCcHHHHHHHH-HHHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 55666666 444555 5999876432 223233333 334433356888888 999999875543 45899998833
Q ss_pred cccCcCCc--hhHHHHH----HHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 255 DLGMEIPI--EKIFLAQ----KVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 255 DLg~e~~~--e~v~~~q----k~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
-=++...- ..++..| ..+.++++..++|+|.-.-+=. -.||+.|
T Consensus 181 pGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~------------~gDI~KA 230 (343)
T TIGR01305 181 PGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTC------------PGDVAKA 230 (343)
T ss_pred CCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCc------------hhHHHHH
Confidence 32222221 1222223 3444555556788887655442 2688777
No 344
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=29.53 E-value=1.6e+02 Score=25.80 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=25.4
Q ss_pred chhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEE
Q 012335 117 YKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRC 155 (466)
Q Consensus 117 ~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v 155 (466)
+.++.+.+++||.|.--.|-+ -+|.+++.+.+.+...+
T Consensus 30 ~~em~~sLk~GD~VvT~GGi~-G~V~~I~~~~~~v~le~ 67 (113)
T PRK06531 30 RQNQLNAIQKGDEVVTIGGLY-GTVDEVDTEAKTIVLDV 67 (113)
T ss_pred HHHHHHhcCCCCEEEECCCcE-EEEEEEecCCCEEEEEE
Confidence 357788889999988887755 45666653334555554
No 345
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=29.47 E-value=93 Score=31.19 Aligned_cols=52 Identities=27% Similarity=0.404 Sum_probs=40.8
Q ss_pred ceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 224 ILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 224 ~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
.++++ ++.+-.+|+.+.+|++.|-=|-|.- +-....+..++.+|+.|+|+++
T Consensus 39 SP~Ma-----~~~eE~~e~~kia~AL~INIGTL~~-----~~~~~m~~A~~~An~~~~PvvL 90 (265)
T COG2145 39 SPVMA-----DAPEEVEEFAKIADALLINIGTLSA-----ERIQAMRAAIKAANESGKPVVL 90 (265)
T ss_pred Cchhc-----cCHHHHHHHHHhccceEEeeccCCh-----HHHHHHHHHHHHHHhcCCCEEe
Confidence 45665 4556688999999999998666653 4566778889999999999986
No 346
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=29.41 E-value=1.5e+02 Score=28.64 Aligned_cols=95 Identities=16% Similarity=0.128 Sum_probs=59.7
Q ss_pred cHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeC------Ccc
Q 012335 183 DKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVAR------GDL 256 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaR------gDL 256 (466)
+.+.|.+.+.+.+.|+|-+-.-.+.+.+++++..+ +..+.-.-.++....+.....-...+|.+++.. |-.
T Consensus 63 ~~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~---~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt 139 (208)
T COG0135 63 SIEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL---GVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT 139 (208)
T ss_pred CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC
Confidence 33333344577899999999999999999999875 212221222222111222222223479999986 788
Q ss_pred cCcCCchhHHHHHHHHHHHHHHcCCCeEEeehh
Q 012335 257 GMEIPIEKIFLAQKVMIHKANIQGKPVVTATQM 289 (466)
Q Consensus 257 g~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqm 289 (466)
|..+++.-++.. ....|+++|.-+
T Consensus 140 G~~fDW~~l~~~---------~~~~~~~LAGGL 163 (208)
T COG0135 140 GQTFDWNLLPKL---------RLSKPVMLAGGL 163 (208)
T ss_pred CcEECHHHhccc---------cccCCEEEECCC
Confidence 888888765544 456788888753
No 347
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=29.41 E-value=1.9e+02 Score=29.64 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=48.8
Q ss_pred CCeEEEEecCCCCC----C--------------HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEE
Q 012335 9 PKTKIVCTLGPASR----S--------------VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAV 70 (466)
Q Consensus 9 r~tkIi~TiGp~~~----~--------------~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i 70 (466)
|++=+.+||||-.. + .|.++.|++.|+|++=|-..... .+.+..+..+|+.-++.|..+.+
T Consensus 113 k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~-l~~KaA~~a~~~~~~~~~~~LPv 191 (311)
T COG0646 113 KPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDT-LNAKAAVFAAREVFEELGVRLPV 191 (311)
T ss_pred CceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccH-HHHHHHHHHHHHHHHhcCCcccE
Confidence 67889999999763 1 36677899999999999766554 45677888999988888866665
Q ss_pred Ee
Q 012335 71 ML 72 (466)
Q Consensus 71 ~~ 72 (466)
|+
T Consensus 192 ~~ 193 (311)
T COG0646 192 MI 193 (311)
T ss_pred EE
Confidence 54
No 348
>PRK07411 hypothetical protein; Validated
Probab=29.39 E-value=2.3e+02 Score=29.81 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
+..+++.|.+.+..+.|.+--+.... +|..+++...|.|+-+-.++ .....+-+.|.++++|.+.+
T Consensus 94 a~~a~~~l~~~np~v~v~~~~~~~~~-~~~~~~~~~~D~Vvd~~d~~----------~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 94 IESAKNRILEINPYCQVDLYETRLSS-ENALDILAPYDVVVDGTDNF----------PTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHHHHHHHHHCCCCeEEEEecccCH-HhHHHHHhCCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 55567778878887777665554332 57788888899888875544 24555778999999998865
No 349
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=29.38 E-value=3.5e+02 Score=26.97 Aligned_cols=64 Identities=17% Similarity=0.401 Sum_probs=42.8
Q ss_pred HHHhcHHHHHhc--CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhh
Q 012335 234 EGVANFDDVLAN--SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAA 311 (466)
Q Consensus 234 ~av~nideI~~~--sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naa 311 (466)
.|++++=+-++. .||++|. ++|+|+ ..++...|+++|...|..- +|..+...+..++..+
T Consensus 106 ~G~e~F~~~~~~aGvdgviip------DLP~ee----~~~~~~~~~~~gi~~I~lv--------~PtT~~eri~~i~~~a 167 (263)
T CHL00200 106 YGINKFIKKISQAGVKGLIIP------DLPYEE----SDYLISVCNLYNIELILLI--------APTSSKSRIQKIARAA 167 (263)
T ss_pred hCHHHHHHHHHHcCCeEEEec------CCCHHH----HHHHHHHHHHcCCCEEEEE--------CCCCCHHHHHHHHHhC
Confidence 477777555555 5999995 556655 6688899999998877532 3444455666676665
Q ss_pred hhhc
Q 012335 312 ENFI 315 (466)
Q Consensus 312 E~~~ 315 (466)
+-.+
T Consensus 168 ~gFI 171 (263)
T CHL00200 168 PGCI 171 (263)
T ss_pred CCcE
Confidence 5433
No 350
>PLN02929 NADH kinase
Probab=29.38 E-value=39 Score=34.54 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=23.4
Q ss_pred hcCCcEEEEEcCCchHHHHHHhcCCCCC
Q 012335 348 CIKAALILVLTRGGTTAKMVSKYRPSMP 375 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk~RP~~P 375 (466)
+..++.+++-|.+|+||..+|.--|-+|
T Consensus 193 ~~~~DGliVsTpTGSTAY~lSAGG~i~P 220 (301)
T PLN02929 193 NVRSSGLRVSTAAGSTAAMLSAGGFPMP 220 (301)
T ss_pred EeecCcEEEeCCccHHHHHHhcCCCCCC
Confidence 4578889999999999999999884444
No 351
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=29.35 E-value=3.4e+02 Score=27.68 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCchHHHHHHhc----CCCCCEEEE
Q 012335 350 KAALILVLTRGGTTAKMVSKY----RPSMPILSV 379 (466)
Q Consensus 350 ~a~~Ivv~T~sG~ta~~vSk~----RP~~PIiAv 379 (466)
..+.||+.+-||.|+--++++ .|.+.|+++
T Consensus 184 ~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv 217 (329)
T PRK14045 184 RFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGI 217 (329)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 468999999999998765553 599999999
No 352
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=29.25 E-value=2.1e+02 Score=29.95 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 209 DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 209 dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
-+..+++.|.+.+.++.|.+.-+... -+|++++++-.|-|+-+-.+ +..+..+-+.|.++|+|.+.+.
T Consensus 96 Ka~~~~~~l~~~np~v~i~~~~~~i~-~~~~~~~~~~~DlVid~~Dn----------~~~r~~in~~~~~~~iP~v~~~ 163 (370)
T PRK05600 96 KVEVAAERLKEIQPDIRVNALRERLT-AENAVELLNGVDLVLDGSDS----------FATKFLVADAAEITGTPLVWGT 163 (370)
T ss_pred HHHHHHHHHHHHCCCCeeEEeeeecC-HHHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 35566777777777777666544332 35788999889988766333 2456677889999999988763
No 353
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=29.21 E-value=2.2e+02 Score=27.81 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=38.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCceEEEecCC-CCHHHHHHHHHHHHHHHHHcCCceEEEe
Q 012335 12 KIVCTLGPASRSVEMAEKLLRAGMNVARFNFSH-GSHAYHQETLDNLRTAMNNTGILCAVML 72 (466)
Q Consensus 12 kIi~TiGp~~~~~~~l~~li~~G~~v~RiN~sh-g~~~~~~~~i~~ir~~~~~~~~~i~i~~ 72 (466)
.-++++-|.....+.|+++.+.|+..+|+|... |.. ....+...++.+. ++|.++-+..
T Consensus 71 ~g~~~~~p~~~~~~~l~~~~~~g~rGvRl~~~~~~~~-~~~~~~~~~~~~~-~~gl~v~~~~ 130 (263)
T cd01311 71 RGGATVDPRTTTDAELKEMHDAGVRGVRFNFLFGGVD-NKDELDEIAKRAA-ELGWHVQVYF 130 (263)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCeEEEEecccCCCC-CHHHHHHHHHHHH-HcCCEEEEEe
Confidence 344566666666899999999999999999874 433 3333333444433 5787766654
No 354
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=29.11 E-value=1.7e+02 Score=25.36 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=33.8
Q ss_pred EEecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEe
Q 012335 90 IQLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVL 161 (466)
Q Consensus 90 i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l 161 (466)
-.|..||.|++..|-..+|++.. +|.|-+|. .|+|. + .+..|.|+| .+|.+
T Consensus 49 ~~L~dGDsV~liKDLkVKGss~~-----------~K~GTkVk----nIrL~----d-~~h~Idckv-~~g~m 99 (109)
T TIGR00686 49 NLLANGDSVILIKDLKVKGSSLV-----------LKKGTKIK----NIRLV----N-GDHNVDCKI-EGGSL 99 (109)
T ss_pred CCccCCCEEEEEeeccccCcccc-----------eeCccEEE----EEEec----C-CCceEeeEe-CceeE
Confidence 57999999999988767776532 35666553 34441 2 346799998 65654
No 355
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=29.08 E-value=95 Score=30.18 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred CHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh-
Q 012335 232 NLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA- 310 (466)
Q Consensus 232 ~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na- 310 (466)
..++++|+.+|-+..|-=+|| |-+=.--+-||.+ .||..||-+++++
T Consensus 51 R~~gv~dIkai~~~v~vPIIG--------------------IiKrd~~~s~v~I------------TptlkeVd~L~~~G 98 (229)
T COG3010 51 RIEGVEDIKAIRAVVDVPIIG--------------------IIKRDYPDSPVRI------------TPTLKEVDALAEAG 98 (229)
T ss_pred eecchhhHHHHHhhCCCCeEE--------------------EEecCCCCCCcee------------cccHHHHHHHHHCC
Q ss_pred -----hhhhccchhh--HHHHHhhCCCCCCc--HHHHHHHHHHHHHhcCCcEEEEEcCCchHH-------------HHHH
Q 012335 311 -----AENFINYGDL--FKKIMETAPVPMSP--LESLASSAVRTANCIKAALILVLTRGGTTA-------------KMVS 368 (466)
Q Consensus 311 -----aE~~~~~~~~--~~~~~~~~~~~~~~--~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta-------------~~vS 368 (466)
........|. +.++......+... .+.-...=...|.+++++ ||=-|-||+|- +.++
T Consensus 99 a~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D-~IGTTLsGYT~~~~~~~~pDf~lvk~l~ 177 (229)
T COG3010 99 ADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFD-IIGTTLSGYTGYTEKPTEPDFQLVKQLS 177 (229)
T ss_pred CcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCc-EEecccccccCCCCCCCCCcHHHHHHHH
Q ss_pred hcCCCCCEEE
Q 012335 369 KYRPSMPILS 378 (466)
Q Consensus 369 k~RP~~PIiA 378 (466)
+ +.|+++|
T Consensus 178 ~--~~~~vIA 185 (229)
T COG3010 178 D--AGCRVIA 185 (229)
T ss_pred h--CCCeEEe
No 356
>PRK06835 DNA replication protein DnaC; Validated
Probab=29.01 E-value=1.1e+02 Score=31.51 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=35.2
Q ss_pred HhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehh
Q 012335 243 LANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQM 289 (466)
Q Consensus 243 ~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqm 289 (466)
+.-+|-++|. |||.+..-+..-..--.|+......+||+|++|+.
T Consensus 244 l~~~DLLIID--DlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 244 LINCDLLIID--DLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred hccCCEEEEe--ccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3457999996 99999766544444557888888889999999974
No 357
>PRK03906 mannonate dehydratase; Provisional
Probab=28.99 E-value=1.2e+02 Score=32.15 Aligned_cols=87 Identities=10% Similarity=0.025 Sum_probs=61.3
Q ss_pred hcHHHHHhccCcCCCcEEEEc-------CCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCC
Q 012335 182 KDKEDILNWGVPNKIDMIALS-------FVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARG 254 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~s-------fV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRg 254 (466)
.|-..+ .+..+.|+..|... -|-+.+++.+.|+.+.+.|-...+ ||+. ...+.|+.+.+
T Consensus 11 ~d~~~l-~~~rQ~G~~~iv~~l~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~v---vEs~----------pv~~~Ik~g~~ 76 (385)
T PRK03906 11 NDPVTL-EDIRQPGATGIVTALHDIPVGEVWPVEEILARKAEIEAAGLEWSV---VESV----------PVHEDIKTGTP 76 (385)
T ss_pred CCcchH-HHHhcCCCCceeecCCCCCCCCCCCHHHHHHHHHHHHHcCCeEEE---EeCC----------CccHHHHcCCC
Confidence 444455 55677999988833 367889999999999998854444 5662 12245555533
Q ss_pred cccCcCCchhHHHHHHHHHHHHHHcCCCeEEeeh
Q 012335 255 DLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQ 288 (466)
Q Consensus 255 DLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATq 288 (466)
+.++-....++.++.+-++|.++++.--
T Consensus 77 ------~rd~~ie~y~~sirnlg~~GI~~icYnf 104 (385)
T PRK03906 77 ------NRDRYIENYKQTLRNLAAAGIKVVCYNF 104 (385)
T ss_pred ------CHHHHHHHHHHHHHHHHhcCCcEEEecC
Confidence 3456667778889999999999998754
No 358
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.89 E-value=1.4e+02 Score=24.74 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=24.6
Q ss_pred EecCCCEEEEEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEE
Q 012335 91 QLVQGQEITISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLD 143 (466)
Q Consensus 91 ~l~~G~~v~l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~ 143 (466)
++++|+.|.|... ++++ ||..+-+.||.++|.+.+
T Consensus 20 eV~~gd~vel~~g--------rVhI----------pG~vv~~n~g~l~l~~es 54 (91)
T COG4013 20 EVDVGDYVELYFG--------RVHI----------PGRVVHYNDGLLRLVHES 54 (91)
T ss_pred cCCCCCEEEEEEE--------EEEe----------ccEEEEeeccEEEEEEec
Confidence 4567777777652 2444 688888888888887754
No 359
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=28.85 E-value=3.4e+02 Score=22.61 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=22.6
Q ss_pred chhhh-hccCCCCEEEEe--------CCeEEEEEEEEe
Q 012335 117 YKKLA-EDLRPGSVILCS--------DGTISLTVLDCA 145 (466)
Q Consensus 117 ~~~~~-~~v~~Gd~i~id--------dG~i~l~V~~v~ 145 (466)
+..+. ..++.|++|.+- .|+++|.|.+++
T Consensus 61 ~~~i~~~~l~~G~~V~v~g~~~~y~~~G~~sl~v~~i~ 98 (99)
T PF13742_consen 61 ARRIRGFDLKDGDKVLVRGRVSFYEPRGSLSLIVEDID 98 (99)
T ss_pred HhhCCCCCCCCCCEEEEEEEEEEECCCcEEEEEEEEeE
Confidence 34454 678999999876 799999998774
No 360
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=28.79 E-value=1.1e+02 Score=28.33 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=44.7
Q ss_pred HHHHHhccCcCCCcEEEEcCCCC---------hhhHHHHHHHHHhcCCCceEEEe--ecCHHHHhcHHHHHhc-CCeeEE
Q 012335 184 KEDILNWGVPNKIDMIALSFVRK---------GSDLVEVRNLLRVHAKNILLMSK--VENLEGVANFDDVLAN-SDAFMV 251 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~s---------a~dv~~~r~~l~~~~~~~~IiaK--IE~~~av~nideI~~~-sDgImi 251 (466)
.+++ ..+.+.|+|||.++-+-. ...+..++++..... +++|+|- | + .+|+.++++. +|||.+
T Consensus 106 ~~e~-~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~---~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 106 LEEL-AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-T---LENAAEVLAAGADGVAV 179 (196)
T ss_pred HHHH-HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-C---HHHHHHHHHcCCCEEEE
Confidence 3455 457889999999866532 225667776654332 3555553 4 2 2678888775 799999
Q ss_pred eCCcccCc
Q 012335 252 ARGDLGME 259 (466)
Q Consensus 252 aRgDLg~e 259 (466)
+++=+..+
T Consensus 180 ~~~i~~~~ 187 (196)
T TIGR00693 180 VSAIMQAA 187 (196)
T ss_pred hHHhhCCC
Confidence 97766443
No 361
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=28.54 E-value=2.5e+02 Score=29.88 Aligned_cols=63 Identities=10% Similarity=0.049 Sum_probs=45.4
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEE-eecCHHHHhcHHHHHhcCCeeEEeC
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMS-KVENLEGVANFDDVLANSDAFMVAR 253 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~Iia-KIE~~~av~nideI~~~sDgImiaR 253 (466)
+.+.+.|+|++.+...-+.+.+.++.+.+++.|. ++.. .+.....++.++++....|.|++.+
T Consensus 244 ~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~Gi--kvgVD~lnp~tp~e~i~~l~~~vD~Vllht 307 (391)
T PRK13307 244 RMAADATADAVVISGLAPISTIEKAIHEAQKTGI--YSILDMLNVEDPVKLLESLKVKPDVVELHR 307 (391)
T ss_pred HHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCC--EEEEEEcCCCCHHHHHHHhhCCCCEEEEcc
Confidence 4457899999999987766678888888887764 4333 3433345667777766789888876
No 362
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.51 E-value=53 Score=33.46 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=28.7
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 176 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~v 211 (305)
T PRK02645 176 QYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIV 211 (305)
T ss_pred EEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEE
Confidence 4578999999999999999998 5789999998
No 363
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=28.50 E-value=5.2e+02 Score=24.68 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=29.6
Q ss_pred CcHHHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHHhc--CCCCCEEEEEec
Q 012335 333 SPLESLASSAVRTANCIK---AALILVLTRGGTTAKMVSKY--RPSMPILSVIVP 382 (466)
Q Consensus 333 ~~~~~ia~~av~~a~~~~---a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv~~~ 382 (466)
+..+.-+...+..+.+.+ .+.|++.| ||+++..+|.+ +...|.+++ +|
T Consensus 29 S~K~R~a~~~l~~a~~~g~~~~~~vv~~s-sGN~g~alA~~a~~~g~~~~v~-~p 81 (244)
T cd00640 29 SFKDRGALNLILLAEEEGKLPKGVIIEST-GGNTGIALAAAAARLGLKCTIV-MP 81 (244)
T ss_pred CcHHHHHHHHHHHHHHcCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCCEEEE-EC
Confidence 334555666666666666 56666654 47877654432 367888888 44
No 364
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=28.45 E-value=1.5e+02 Score=29.30 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=30.0
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHH
Q 012335 9 PKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAY 49 (466)
Q Consensus 9 r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~ 49 (466)
..+|+.+-+=|.....+-++..+++|++.+|+-++-.....
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~~~ 113 (263)
T cd07943 73 KQAKLGVLLLPGIGTVDDLKMAADLGVDVVRVATHCTEADV 113 (263)
T ss_pred cCCEEEEEecCCccCHHHHHHHHHcCCCEEEEEechhhHHH
Confidence 46887765545555678899999999999999765554433
No 365
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.42 E-value=3.3e+02 Score=29.87 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=39.9
Q ss_pred HHHHHhccCcCCCcEEEEcCCCChhh----HHHHHHHHHhcCCCceEEE-eecCHHHHhcHHHHHhcCCeeEEeCCc
Q 012335 184 KEDILNWGVPNKIDMIALSFVRKGSD----LVEVRNLLRVHAKNILLMS-KVENLEGVANFDDVLANSDAFMVARGD 255 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~sa~d----v~~~r~~l~~~~~~~~Iia-KIE~~~av~nideI~~~sDgImiaRgD 255 (466)
.+-+ +..++.|+|+|.+. .+... ++.++.+-...+..+.|+| -|.++++.+.+-+ .=+|+|.|+.|-
T Consensus 244 ~~ra-~~Lv~aGvd~i~vd--~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~ 315 (502)
T PRK07107 244 AERV-PALVEAGADVLCID--SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGG 315 (502)
T ss_pred HHHH-HHHHHhCCCeEeec--CcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCC
Confidence 3444 55678999999987 22222 3334333222333466666 6888888755543 348999996543
No 366
>PRK05826 pyruvate kinase; Provisional
Probab=28.36 E-value=7.2e+02 Score=27.06 Aligned_cols=181 Identities=15% Similarity=0.137 Sum_probs=97.4
Q ss_pred ChhcHHHHHhccCcCCC-cEEEEcCCCChhhHHHHHHHHHhc--------------------------------CCCceE
Q 012335 180 TEKDKEDILNWGVPNKI-DMIALSFVRKGSDLVEVRNLLRVH--------------------------------AKNILL 226 (466)
Q Consensus 180 te~D~~di~~~~~~~~~-d~v~~sfV~sa~dv~~~r~~l~~~--------------------------------~~~~~I 226 (466)
+..|.+.+.++..+.|- +...++.+++++.++.+.+++... ...+.+
T Consensus 197 saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi 276 (465)
T PRK05826 197 SAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVI 276 (465)
T ss_pred CHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEE
Confidence 67788888667666777 788899999999999988776421 012334
Q ss_pred EE------eecCH-----HHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhc
Q 012335 227 MS------KVENL-----EGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIK 295 (466)
Q Consensus 227 ia------KIE~~-----~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~ 295 (466)
+| +++++ |.-+=...++.-+|++|.. |+=+.--=+.+....+.+|+..+.+.- +- ......+.
T Consensus 277 ~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS-~ETA~G~yPveaV~~m~~I~~~aE~~~-~~---~~~~~~~~- 350 (465)
T PRK05826 277 TATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLS-GETAAGKYPVEAVEAMARICKGAEKEF-SI---NLSKHRLD- 350 (465)
T ss_pred EECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEec-cccccCcCHHHHHHHHHHHHHHHHhcc-ch---hhhhhhcc-
Confidence 44 34433 3333445666678999986 332221112344456677887776541 10 11111110
Q ss_pred CCCCCHHHHHhHHHhh-hhhccchhhHHHHHhhCCCCCCcHHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCC
Q 012335 296 SPRPTRAEATDVANAA-ENFINYGDLFKKIMETAPVPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSM 374 (466)
Q Consensus 296 ~p~PTRAEvsDv~naa-E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~RP~~ 374 (466)
....+.+ ..++.+| +.+..... .+-+... + .-...|..+|..-....|+++|.+-.++|.++=++--.
T Consensus 351 ~~~~~~~--~~ia~aa~~~a~~l~~-a~~Ivv~-----T---~sG~ta~~isk~RP~~pI~~~t~~~~~~r~l~l~~GV~ 419 (465)
T PRK05826 351 RQFDRID--EAIAMSAMYAANHLKG-VKAIVAL-----T---ESGRTARLISRFRPGAPIFAVTRDEKTQRRLALYRGVY 419 (465)
T ss_pred ccccchH--HHHHHHHHHHHHhcCC-CCEEEEE-----C---CCcHHHHHHHhhCCCCCEEEEcCCHHHHHHhhcccCcE
Confidence 0111222 2233332 21111000 0000000 0 01134555666655566999999999999999998766
Q ss_pred CEE
Q 012335 375 PIL 377 (466)
Q Consensus 375 PIi 377 (466)
|++
T Consensus 420 p~~ 422 (465)
T PRK05826 420 PVL 422 (465)
T ss_pred EEE
Confidence 754
No 367
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=28.23 E-value=1.1e+02 Score=31.97 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=50.0
Q ss_pred hccCcCCCcEEEEcCCCCh---------hhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc--CCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALSFVRKG---------SDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN--SDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa---------~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~--sDgImiaRgDLg 257 (466)
+...+.|++++.+= =|++ .|...++.+.... .++++||-= +...++..+.+++. +||||+|||-|-
T Consensus 162 k~~e~aG~~~ltVH-GRtr~~kg~~~~pad~~~i~~v~~~~-~~ipviaNG-nI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 162 KMLEDAGVSLLTVH-GRTREQKGLKTGPADWEAIKAVRENV-PDIPVIANG-NILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred HHHHhCCCcEEEEe-cccHHhcCCCCCCcCHHHHHHHHHhC-cCCcEEeeC-CcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 45567899988762 1222 2333343333222 227777741 22334455566663 799999999986
Q ss_pred CcCCc------hhHHHHHHHHHHHHHHcCCC
Q 012335 258 MEIPI------EKIFLAQKVMIHKANIQGKP 282 (466)
Q Consensus 258 ~e~~~------e~v~~~qk~ii~~~~~~gkP 282 (466)
...=+ ......-.+-+..|.+++-+
T Consensus 239 NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g~ 269 (358)
T KOG2335|consen 239 NPALFLTAGYGPTPWGCVEEYLDIAREFGGL 269 (358)
T ss_pred CchhhccCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 53322 12234445566667776644
No 368
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=28.18 E-value=54 Score=33.21 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=28.1
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
+..++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 173 ~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~l 208 (291)
T PRK02155 173 NQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVL 208 (291)
T ss_pred EEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEE
Confidence 4578999999999999999998 4788888888
No 369
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.80 E-value=85 Score=29.21 Aligned_cols=54 Identities=28% Similarity=0.466 Sum_probs=38.4
Q ss_pred HHHhcHH-HHHhcC--C--eeEEeCCcccCcC--------CchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 234 EGVANFD-DVLANS--D--AFMVARGDLGMEI--------PIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 234 ~av~nid-eI~~~s--D--gImiaRgDLg~e~--------~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
..+++++ ++++.. | -|++|=.|+.... +++++..-.++|+..|++.|.++++.|
T Consensus 60 ~~l~r~~~~v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t 126 (204)
T cd01830 60 SALARFDRDVLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIGAT 126 (204)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEec
Confidence 4455554 344432 3 5566777876543 778888888999999999999999876
No 370
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=27.76 E-value=2e+02 Score=27.20 Aligned_cols=91 Identities=8% Similarity=0.068 Sum_probs=53.4
Q ss_pred cCCCcEEEEcCCCC--hhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHH
Q 012335 193 PNKIDMIALSFVRK--GSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQK 270 (466)
Q Consensus 193 ~~~~d~v~~sfV~s--a~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk 270 (466)
..+...+.++.-.. .+.....++.+...|-+...+--+++ ..-..+.+.+..+|+|+++-||=..-+..-+=-...+
T Consensus 27 ~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~-~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~ 105 (210)
T cd03129 27 GAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT-ANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLD 105 (210)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC-CCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHH
Confidence 34677777765442 35677788888888765555555543 2224456677789999999887532111100001334
Q ss_pred HHHHHHHHcCCCeEE
Q 012335 271 VMIHKANIQGKPVVT 285 (466)
Q Consensus 271 ~ii~~~~~~gkPvi~ 285 (466)
.|.+.++ .|+|++-
T Consensus 106 ~i~~~~~-~G~v~~G 119 (210)
T cd03129 106 AILKRVA-RGVVIGG 119 (210)
T ss_pred HHHHHHH-cCCeEEE
Confidence 5556655 7877654
No 371
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=27.70 E-value=6.2e+02 Score=25.21 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCcEEEEE-cCCch--HHHHHH---hcCCCCCEEEEEeccccccccccccCChhhhhhhcCccCcEE
Q 012335 338 LASSAVRTANCIKAALILVL-TRGGT--TAKMVS---KYRPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVP 410 (466)
Q Consensus 338 ia~~av~~a~~~~a~~Ivv~-T~sG~--ta~~vS---k~RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P 410 (466)
+...+..++....|+++++- +.+|. +...+. +..| .||+.- + .++.+.....|...-|++-
T Consensus 160 ~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVlvG-------S----Gvt~~Ni~~~l~~ADG~IV 226 (254)
T PF03437_consen 160 LEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP-VPVLVG-------S----GVTPENIAEYLSYADGAIV 226 (254)
T ss_pred HHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-CCEEEe-------c----CCCHHHHHHHHHhCCEEEE
Confidence 44444455567799987762 22333 223344 4456 788887 2 2567788888888888763
No 372
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=27.58 E-value=1.6e+02 Score=30.40 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=30.0
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCH
Q 012335 8 SPKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSH 47 (466)
Q Consensus 8 ~r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~ 47 (466)
.+++|+.+-+=|...+.+-++...++|++.+|+-+ |.+.
T Consensus 74 ~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~-~~~e 112 (333)
T TIGR03217 74 VKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVAT-HCTE 112 (333)
T ss_pred CCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEe-ccch
Confidence 35688776665666678889999999999999955 5554
No 373
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=27.56 E-value=1.6e+02 Score=29.07 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=57.7
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcC--CCceEEE--eecCHHHHhcHHHHHh-cCCeeEEeCCcccCcCCch
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHA--KNILLMS--KVENLEGVANFDDVLA-NSDAFMVARGDLGMEIPIE 263 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~--~~~~Iia--KIE~~~av~nideI~~-~sDgImiaRgDLg~e~~~e 263 (466)
+.+...|.|++..| ++++..+|+.++..- --+.|=+ +--.++++-+..+-.. -+|.+.|||+=+..+-|.+
T Consensus 150 ~~~~~~G~dgvv~~----~~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~p~~ 225 (240)
T COG0284 150 KLAGEAGLDGVVCS----AEEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVA 225 (240)
T ss_pred HHhccCCceEEEcC----HHHHHHHHHhcCCCcEEECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChhhhcCCChHH
Confidence 44566788988655 899999998875110 0111223 4445777766666554 5999999999999988888
Q ss_pred hHHHHHHHHHHHHH
Q 012335 264 KIFLAQKVMIHKAN 277 (466)
Q Consensus 264 ~v~~~qk~ii~~~~ 277 (466)
.+-.+.+.+-..++
T Consensus 226 a~~~i~~~~~~~~~ 239 (240)
T COG0284 226 AARAIAREIAREAR 239 (240)
T ss_pred HHHHHHHHHHHhhc
Confidence 77777776655543
No 374
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.55 E-value=1.2e+02 Score=30.56 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=42.5
Q ss_pred hcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEE--eecCHHHHhcHHHHHhc-CCeeEEeC
Q 012335 182 KDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMS--KVENLEGVANFDDVLAN-SDAFMVAR 253 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~Iia--KIE~~~av~nideI~~~-sDgImiaR 253 (466)
.+.+++ ..+.+.|+|||++.. -+.+++.++.+.+. ..+.+.| =| -.+|+.++++. +|+|-++.
T Consensus 196 ~tleea-~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~---~~i~i~AiGGI----t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 196 ETEEQV-REAVAAGADIIMFDN-RTPDEIREFVKLVP---SAIVTEASGGI----TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred CCHHHH-HHHHHcCCCEEEECC-CCHHHHHHHHHhcC---CCceEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 455566 567889999999974 56677777666542 2333222 12 34788999987 89998874
No 375
>PRK09989 hypothetical protein; Provisional
Probab=27.54 E-value=4.7e+02 Score=25.30 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=27.2
Q ss_pred HHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCC
Q 012335 186 DILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKN 223 (466)
Q Consensus 186 di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~ 223 (466)
.+ +.+.+.|+|+|=+.+.. ..+..++++++.+.|-.
T Consensus 20 ~l-~~~~~~Gfd~VEl~~~~-~~~~~~~~~~l~~~Gl~ 55 (258)
T PRK09989 20 RF-AAARKAGFDAVEFLFPY-DYSTLQIQKQLEQNHLT 55 (258)
T ss_pred HH-HHHHHcCCCEEEECCcc-cCCHHHHHHHHHHcCCc
Confidence 45 77889999999987643 35678889989887643
No 376
>PRK06381 threonine synthase; Validated
Probab=27.52 E-value=5.1e+02 Score=26.07 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEE
Q 012335 335 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSV 379 (466)
Q Consensus 335 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv 379 (466)
.+..+...+..|.+.+++.|++.| +|+++..+|.+ +-..|.+.+
T Consensus 47 K~R~a~~~l~~a~~~g~~~lv~aS-sGN~g~alA~~aa~~G~~~~iv 92 (319)
T PRK06381 47 KDRIAEAHVRRAMRLGYSGITVGT-CGNYGASIAYFARLYGLKAVIF 92 (319)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEE
Confidence 455667777778888888776644 78887765553 346776666
No 377
>PRK14851 hypothetical protein; Provisional
Probab=27.44 E-value=2.4e+02 Score=32.25 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee--
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT-- 287 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT-- 287 (466)
+..+++.+.+.|..+.|.+-=+... -+|++++++-.|.|+=+ -|.- -..+...+.+.|++.++|+|.++
T Consensus 99 v~v~~~~l~~inP~~~I~~~~~~i~-~~n~~~~l~~~DvVid~-~D~~-------~~~~r~~l~~~c~~~~iP~i~~g~~ 169 (679)
T PRK14851 99 LAVMKEQALSINPFLEITPFPAGIN-ADNMDAFLDGVDVVLDG-LDFF-------QFEIRRTLFNMAREKGIPVITAGPL 169 (679)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCC-hHHHHHHHhCCCEEEEC-CCCC-------cHHHHHHHHHHHHHCCCCEEEeecc
Confidence 5566677777777777766444332 36889999888976633 2321 12455678889999999999887
Q ss_pred ----hhhHhhhcCC-CCCHHHHHhH
Q 012335 288 ----QMLESMIKSP-RPTRAEATDV 307 (466)
Q Consensus 288 ----qmLeSM~~~p-~PTRAEvsDv 307 (466)
|++ +..| -|+-.|..|+
T Consensus 170 G~~g~~~---~~~p~~~~~~~~~~~ 191 (679)
T PRK14851 170 GYSSAML---VFTPQGMGFDDYFNI 191 (679)
T ss_pred cccceEE---EEcCCCCCHhHhccC
Confidence 343 1122 4666777666
No 378
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=27.10 E-value=1.8e+02 Score=29.88 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=39.8
Q ss_pred CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee--h-hhHhhhcCC---CCCHHHHHhHHHh
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT--Q-MLESMIKSP---RPTRAEATDVANA 310 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT--q-mLeSM~~~p---~PTRAEvsDv~na 310 (466)
.|.+.++ |-|---+| +.+..++++.|++.|+.|++.| + +++....+| .|.+.|.....|.
T Consensus 130 ~d~Vvls-GSlP~g~~----~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~EL~~~~g~ 195 (310)
T COG1105 130 DDIVVLS-GSLPPGVP----PDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNREELEALFGR 195 (310)
T ss_pred CCEEEEe-CCCCCCCC----HHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCHHHHHHHhCC
Confidence 4666655 55544444 4678899999999999999987 2 334443344 4677777766554
No 379
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.85 E-value=73 Score=31.58 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=27.4
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
...++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 143 ~~~~DG~ivsTptGSTaY~lSaGGpiv~p~~~~l~I 178 (256)
T PRK14075 143 WFFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEI 178 (256)
T ss_pred EEecCEEEEeCCCchHHHHhhCCCceeCCCCCeEEe
Confidence 3578999999999999999998 4677888777
No 380
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=26.82 E-value=1.4e+02 Score=29.69 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCceEEEec-CC------CC-HHHHHHHHHHHHHHHHHcCCceEEEecCCCCee
Q 012335 25 EMAEKLLRAGMNVARFNF-SH------GS-HAYHQETLDNLRTAMNNTGILCAVMLDTKGPEI 79 (466)
Q Consensus 25 ~~l~~li~~G~~v~RiN~-sh------g~-~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~Gpki 79 (466)
+..++++++|+++.=+|. |- -+ .+++.++...++.+.+..+.| |.+|+.-|+.
T Consensus 27 ~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~p--lsiDT~~~~v 87 (257)
T TIGR01496 27 AHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVP--ISVDTYRAEV 87 (257)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe--EEEeCCCHHH
Confidence 456678999999999984 22 12 235666777777766655665 5678886663
No 381
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=26.78 E-value=93 Score=23.56 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=20.0
Q ss_pred CCCCEEEEeCCeEEEEEEEEecCCCeEEE
Q 012335 125 RPGSVILCSDGTISLTVLDCAKELGLVRC 153 (466)
Q Consensus 125 ~~Gd~i~iddG~i~l~V~~v~~~~~~i~~ 153 (466)
++|..|.|+| .|..+|.+++ ++.+.-
T Consensus 7 k~gE~I~Ig~-~I~I~Vl~i~--~~~Vkl 32 (54)
T PF02599_consen 7 KVGESIVIGD-DIEITVLEIS--GGQVKL 32 (54)
T ss_dssp ETT-EEEETT-TEEEEEEEEE--TTEEEE
T ss_pred cCCCEEEECC-CEEEEEEEEc--CCEEEE
Confidence 6899999987 8999999885 566654
No 382
>PRK06721 threonine synthase; Reviewed
Probab=26.76 E-value=5.2e+02 Score=26.65 Aligned_cols=46 Identities=24% Similarity=0.281 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEEEec
Q 012335 335 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSVIVP 382 (466)
Q Consensus 335 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv~~~ 382 (466)
.+..+...+..|.+.+.+.||+.| ||++++.+|.+ +...|.+.+ +|
T Consensus 59 KdR~a~~~i~~a~~~g~~~vV~aS-sGN~G~alA~~aa~~G~~~~vv-vp 106 (352)
T PRK06721 59 KDRGMVMAVAKAKEEGSEAIICAS-TGNTSASAAAYAARLGMKCIIV-IP 106 (352)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEC-CcHHHHHHHHHHHHCCCcEEEE-EC
Confidence 344555555556666767666654 77776655543 445676666 44
No 383
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=26.60 E-value=83 Score=30.26 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=39.0
Q ss_pred HHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCc--c-----cCc-CC-----chhHHHHHHHHHHHHHHcCC
Q 012335 215 NLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGD--L-----GME-IP-----IEKIFLAQKVMIHKANIQGK 281 (466)
Q Consensus 215 ~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgD--L-----g~e-~~-----~e~v~~~qk~ii~~~~~~gk 281 (466)
+++...|..+.+|.-.+ ..+.++++++..||+++.=|. + +-+ .+ -..-......+++.|.+.++
T Consensus 31 ~~i~~aG~~pv~ip~~~---~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~ 107 (217)
T PF07722_consen 31 KAIEAAGGRPVPIPYDA---DDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGK 107 (217)
T ss_dssp HHHHHTT-EEEEE-SS-----HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHcCCEEEEEccCC---CHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCC
Confidence 34455565555555443 445688999999999998665 3 111 01 12344566788999999999
Q ss_pred CeEEee
Q 012335 282 PVVTAT 287 (466)
Q Consensus 282 Pvi~AT 287 (466)
|+.--+
T Consensus 108 PilGIC 113 (217)
T PF07722_consen 108 PILGIC 113 (217)
T ss_dssp -EEEET
T ss_pred CEEEEc
Confidence 976544
No 384
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=26.57 E-value=68 Score=33.54 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 012335 23 SVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTK 75 (466)
Q Consensus 23 ~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~ 75 (466)
+.++|++|.++|+++.|+-.-.- +..+.+..|++...+.|.|+.++.|+.
T Consensus 33 tv~QI~~L~~aGceivRvavp~~---~~a~al~~I~~~l~~~g~~iPlVADIH 82 (359)
T PF04551_consen 33 TVAQIKRLEEAGCEIVRVAVPDM---EAAEALKEIKKRLRALGSPIPLVADIH 82 (359)
T ss_dssp HHHHHHHHHHCT-SEEEEEE-SH---HHHHHHHHHHHHHHCTT-SS-EEEEES
T ss_pred HHHHHHHHHHcCCCEEEEcCCCH---HHHHHHHHHHHhhccCCCCCCeeeecC
Confidence 46789999999999999976432 344577778877777888899999875
No 385
>PRK06260 threonine synthase; Validated
Probab=26.52 E-value=4.1e+02 Score=27.87 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEE
Q 012335 336 ESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSV 379 (466)
Q Consensus 336 ~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv 379 (466)
+..+..++..|.+.+++.|++ ..||+++..+|.| +...|.+.+
T Consensus 100 dRga~~~v~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~ 144 (397)
T PRK06260 100 DRGMTVGVTKALELGVKTVAC-ASTGNTSASLAAYAARAGLKCYVL 144 (397)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEE
Confidence 334444455566666665444 4567776655544 456666666
No 386
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.43 E-value=2.4e+02 Score=26.51 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHH--HHHHHHHHHHcCCCeEE
Q 012335 208 SDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLA--QKVMIHKANIQGKPVVT 285 (466)
Q Consensus 208 ~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~--qk~ii~~~~~~gkPvi~ 285 (466)
.++..+.+++.+.|..+.++. +.+++ +..|+++++ | +- .+.+..... ..+.++.+.+.|+|++-
T Consensus 11 ~~~~~~~~~l~~~G~~~~~~~---------~~~~~-~~~d~iii~-G--~~-~~~~~~~~~~~~~~~i~~~~~~~~Pilg 76 (200)
T PRK13143 11 GNLRSVSKALERAGAEVVITS---------DPEEI-LDADGIVLP-G--VG-AFGAAMENLSPLRDVILEAARSGKPFLG 76 (200)
T ss_pred ccHHHHHHHHHHCCCeEEEEC---------CHHHH-ccCCEEEEC-C--CC-CHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 356788888988887766663 22333 468999994 5 11 111222222 34667888899999765
Q ss_pred ee---hhhH
Q 012335 286 AT---QMLE 291 (466)
Q Consensus 286 AT---qmLe 291 (466)
-. |+|-
T Consensus 77 IC~G~q~l~ 85 (200)
T PRK13143 77 ICLGMQLLF 85 (200)
T ss_pred ECHHHHHHh
Confidence 44 6664
No 387
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.37 E-value=1.2e+02 Score=28.84 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCceEE--EeecCHHHHhcHHHHHhc-CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 213 VRNLLRVHAKNILLM--SKVENLEGVANFDDVLAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 213 ~r~~l~~~~~~~~Ii--aKIE~~~av~nideI~~~-sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
+++.+++.|....++ +.-...+-.+.++..++. .|||++...|-. .....+++|.++|.||++
T Consensus 20 ~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~----------~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD----------SLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTT----------TTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH----------HHHHHHHHHhhcCceEEE
Confidence 445555555555553 222222333455555544 799999866642 123567789999999996
No 388
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=26.30 E-value=3.6e+02 Score=26.71 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred ChhcHHHHHhccCcCCCcEEEE-----cCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc----CCeeE
Q 012335 180 TEKDKEDILNWGVPNKIDMIAL-----SFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN----SDAFM 250 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~-----sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~----sDgIm 250 (466)
...|..++.+...+.|++.|.+ -|=.+.+|+..+++.. +++|+. ++=+-.-.+|-.+ +|+|.
T Consensus 68 ~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~----kdfi~~~~qi~~a~~~GAD~Vl 138 (260)
T PRK00278 68 EDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLR----KDFIIDPYQIYEARAAGADAIL 138 (260)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEe----eeecCCHHHHHHHHHcCCCEEE
Q ss_pred EeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeeh
Q 012335 251 VARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQ 288 (466)
Q Consensus 251 iaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATq 288 (466)
+.-.+|. +.--++++..|+..|.-+++-++
T Consensus 139 Li~~~l~--------~~~l~~li~~a~~lGl~~lvevh 168 (260)
T PRK00278 139 LIVAALD--------DEQLKELLDYAHSLGLDVLVEVH 168 (260)
T ss_pred EEeccCC--------HHHHHHHHHHHHHcCCeEEEEeC
No 389
>PRK10116 universal stress protein UspC; Provisional
Probab=26.28 E-value=1.6e+02 Score=25.33 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCcEEEEEcCCch-------HHHHHHhcCCCCCEEEE
Q 012335 340 SSAVRTANCIKAALILVLTRGGT-------TAKMVSKYRPSMPILSV 379 (466)
Q Consensus 340 ~~av~~a~~~~a~~Ivv~T~sG~-------ta~~vSk~RP~~PIiAv 379 (466)
...++.+++.+++.||+-|+.-. ++..+. .+-+|||+.+
T Consensus 92 ~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~-~~~~~pVLvv 137 (142)
T PRK10116 92 EHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVI-ASSEVDVLLV 137 (142)
T ss_pred HHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHH-hcCCCCEEEE
Confidence 45556788999998888776321 222232 3566999998
No 390
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.26 E-value=4.9e+02 Score=25.44 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=55.7
Q ss_pred hccCcCCCcEEEEcCCC----------ChhhHHHHHHHHHhcCCCceEEE-------ee------cCHHHHhcHHHHHhc
Q 012335 189 NWGVPNKIDMIALSFVR----------KGSDLVEVRNLLRVHAKNILLMS-------KV------ENLEGVANFDDVLAN 245 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~----------sa~dv~~~r~~l~~~~~~~~Iia-------KI------E~~~av~nideI~~~ 245 (466)
+.+.+.|+|+|=++.-. +.+++.++++.+.+.|-.+.-++ -+ ...++++.+...++.
T Consensus 23 ~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~ 102 (279)
T TIGR00542 23 QLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQL 102 (279)
T ss_pred HHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 66789999999775321 46778889999988775443222 01 112345555555554
Q ss_pred -----CCeeEEeCCcccCcC-C---chhHHHHHHHHHHHHHHcCCCeEE
Q 012335 246 -----SDAFMVARGDLGMEI-P---IEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 246 -----sDgImiaRgDLg~e~-~---~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
++.|.+.-++...+- . .+.+....++++..|.++|..+.+
T Consensus 103 a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 103 ARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 355655433321111 1 234444556777777777876654
No 391
>PLN02826 dihydroorotate dehydrogenase
Probab=26.17 E-value=3.6e+02 Score=28.78 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCChhcHHHHHhccCcCCCcEEEEcC
Q 012335 177 PTLTEKDKEDILNWGVPNKIDMIALSF 203 (466)
Q Consensus 177 p~lte~D~~di~~~~~~~~~d~v~~sf 203 (466)
|.+++.|..++.+.+.+.|+|+|.++-
T Consensus 271 Pdl~~~di~~ia~~a~~~G~dGIi~~N 297 (409)
T PLN02826 271 PDLSKEDLEDIAAVALALGIDGLIISN 297 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 578888888887778999999999985
No 392
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=26.11 E-value=5.3e+02 Score=26.02 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEEEecc
Q 012335 336 ESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSVIVPE 383 (466)
Q Consensus 336 ~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv~~~~ 383 (466)
+..+..++..+.+.+...|++.| ||++++.+|.+ +...|.+.+ +|.
T Consensus 56 dR~a~~~l~~a~~~g~~~vv~aS-sGN~g~a~A~~a~~~g~~~~v~-~p~ 103 (328)
T TIGR00260 56 DRGMAVALTKALELGNDTVLCAS-TGNTGAAAAAYAGKAGVKVVIL-YPA 103 (328)
T ss_pred hhhHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHHhccCCCcEEEE-ECC
Confidence 33455555556666767666654 89988776643 466888887 553
No 393
>PRK00568 carbon storage regulator; Provisional
Probab=26.11 E-value=1.1e+02 Score=24.90 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=21.3
Q ss_pred CCCCEEEEeCCeEEEEEEEEecCCCeEEE
Q 012335 125 RPGSVILCSDGTISLTVLDCAKELGLVRC 153 (466)
Q Consensus 125 ~~Gd~i~iddG~i~l~V~~v~~~~~~i~~ 153 (466)
++|..|.|+| .|..+|.++. ++.+.-
T Consensus 7 K~gEsI~Igd-~I~I~Vl~i~--g~~Vrl 32 (76)
T PRK00568 7 KVNEGIVIDD-NIHIKVISID--RGSVRL 32 (76)
T ss_pred eCCCeEEeCC-CeEEEEEEEc--CCEEEE
Confidence 7899999999 6999999884 666653
No 394
>PLN02741 riboflavin synthase
Probab=26.10 E-value=1.8e+02 Score=27.85 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=39.4
Q ss_pred cEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEe-------eCeEecCCCccccC
Q 012335 111 KMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCE-------NSAVLGERKNVNLP 170 (466)
Q Consensus 111 ~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~-------~gG~l~~~Kgvnlp 170 (466)
..+.+..+.+++.+++||.|-+|. +.|.|.+++ ++.+.+-+. +=|.++.+.-|||-
T Consensus 23 ~~l~i~~~~~~~~l~~G~SIAvnG--vCLTV~~~~--~~~f~vdvipETl~~T~L~~l~~G~~VNLE 85 (194)
T PLN02741 23 FDLKIEASTVLDGVKLGDSIAVNG--TCLTVTEFD--GDEFTVGLAPETLRKTSLGELKTGSLVNLE 85 (194)
T ss_pred EEEEEEcchhhcccccCCEEEECc--EEEEEEEEC--CCEEEEEEEHHHhhhCccccCCCCCEEeec
Confidence 345565556788999999999987 789999884 566666653 22556666666663
No 395
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=26.08 E-value=5.2e+02 Score=24.32 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=58.3
Q ss_pred hhcHHHHHhccCcCCCcEEEEc-----CCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhc---HHHHHhc-CCeeEE
Q 012335 181 EKDKEDILNWGVPNKIDMIALS-----FVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVAN---FDDVLAN-SDAFMV 251 (466)
Q Consensus 181 e~D~~di~~~~~~~~~d~v~~s-----fV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~n---ideI~~~-sDgImi 251 (466)
..|..++.+...+.|++++.+. |-.+.+++..+++.. +++|+.| ..+.+ +++..++ +|++.+
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~----~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK----DFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----CeecCHHHHHHHHHcCCCEEEE
Confidence 3455555455678999999763 445778888888764 4677765 23332 4444444 799988
Q ss_pred eCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 252 ARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 252 aRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
+--||. . ..-+++++.|...|..+++.+
T Consensus 101 ~~~~~~----~----~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 101 IVAALD----D----EQLKELYELARELGMEVLVEV 128 (217)
T ss_pred eeccCC----H----HHHHHHHHHHHHcCCeEEEEE
Confidence 644443 1 344677888888899887654
No 396
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=26.05 E-value=1.8e+02 Score=24.71 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=29.8
Q ss_pred chhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEec
Q 012335 117 YKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLG 162 (466)
Q Consensus 117 ~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~ 162 (466)
+.++.+.+++||+|.--.|-+ -+|.+++ ++.+..++-.+..++
T Consensus 37 ~~~ml~sL~kGD~VvT~gGi~-G~V~~v~--d~~v~I~l~~~~~i~ 79 (97)
T COG1862 37 HQELLNSLKKGDEVVTIGGIV-GTVTKVG--DDTVEIELGDGTKIK 79 (97)
T ss_pred HHHHHHhccCCCEEEEcCCeE-EEEEEEe--cCcEEEEECCCeEEE
Confidence 467889999999999988754 6788885 334554444444443
No 397
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=26.03 E-value=1.4e+02 Score=31.59 Aligned_cols=205 Identities=18% Similarity=0.216 Sum_probs=107.8
Q ss_pred HHHHHHHHHhCCceEEEecCCCC-HH---HHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCCCcEEecCCCEEE
Q 012335 24 VEMAEKLLRAGMNVARFNFSHGS-HA---YHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDGKPIQLVQGQEIT 99 (466)
Q Consensus 24 ~~~l~~li~~G~~v~RiN~shg~-~~---~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~ 99 (466)
..+|+.|++.|..+.= +||-. +. ....+-.-.+..++.++.+|...-|.-||+.+- .+ -.|++|+.+.
T Consensus 39 lpTI~~l~~~gakvvl--~sH~gRP~g~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~-~i-----~~l~~G~ilL 110 (389)
T PRK00073 39 LPTIKYLLEKGAKVIL--LSHLGRPKGEDPEFSLAPVAKRLSELLGKEVKFVDDCIGEEARE-AI-----AALKDGEVLL 110 (389)
T ss_pred HHHHHHHHHCCCeEEE--EEecCCCCCCCCCcCHHHHHHHHHHHhCCCeEECCCCCCHHHHH-HH-----hcCCCCcEEE
Confidence 4578889999987644 47743 31 111222223334556788887777777876653 11 2466777666
Q ss_pred EEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCccccCCcccCCCCC
Q 012335 100 ISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKNVNLPGVIVDLPTL 179 (466)
Q Consensus 100 l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kgvnlp~~~~~lp~l 179 (466)
|-.---..++. -+.+.|.+.+.+--.||++|. |-+- ++..-++ +.+| .-+|
T Consensus 111 LEN~Rf~~~E~----~~d~~~a~~LA~l~DiyVNDA---Fg~a--HR~haS~---------------vgi~---~~lp-- 161 (389)
T PRK00073 111 LENVRFNKGEE----KNDPELAKKLASLGDVFVNDA---FGTA--HRAHAST---------------VGIA---KFLK-- 161 (389)
T ss_pred EeccCcCcccc----cCHHHHHHHHHHhCCEEEECc---hhhh--hhcccch---------------hchh---hhCc--
Confidence 64321011111 134567777766555788883 2110 1000000 0000 0011
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCce--EE--EeecCHHHHhcHHHHHhcCCeeEEeC--
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNIL--LM--SKVENLEGVANFDDVLANSDAFMVAR-- 253 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~--Ii--aKIE~~~av~nideI~~~sDgImiaR-- 253 (466)
.. .. -+ -+ .+++..+.+.+..- .++. |+ ||+.++-.+ ++.++..+|.|+++=
T Consensus 162 -~~---~a-G~-----------lm---ekEl~~L~k~l~~p-~rP~vaIlGGaKvsdKi~v--i~~Ll~~~D~liigG~m 219 (389)
T PRK00073 162 -PA---AA-GF-----------LM---EKELEALGKALENP-ERPFVAILGGAKVSDKIGV--LENLLEKVDKLIIGGGM 219 (389)
T ss_pred -hh---hh-hH-----------HH---HHHHHHHHHHhcCC-CCCeEEEEcCccHHhHHHH--HHHHHHhhhhheeChHH
Confidence 00 00 00 00 35666676666432 2222 22 577665554 777788899999962
Q ss_pred ---------CcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 254 ---------GDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 254 ---------gDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
.+.|.++--++.-..-++|+.+|++.|+.+++-+
T Consensus 220 a~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~lPv 262 (389)
T PRK00073 220 ANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPLPV 262 (389)
T ss_pred HHHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEECCC
Confidence 2334333334555666799999999988866443
No 398
>PRK08999 hypothetical protein; Provisional
Probab=26.02 E-value=1.2e+02 Score=30.51 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=44.2
Q ss_pred CChhcHHHHHhccCcCCCcEEEEcCCC---Ch-----hhHHHHHHHHHhcCCCceEEEe--ecCHHHHhcHHHHHhc-CC
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALSFVR---KG-----SDLVEVRNLLRVHAKNILLMSK--VENLEGVANFDDVLAN-SD 247 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~sfV~---sa-----~dv~~~r~~l~~~~~~~~IiaK--IE~~~av~nideI~~~-sD 247 (466)
+|-++.+++ ..|.+.|+|||++|-|. |+ -.+..++++.... +++++|- | ..+|+++++++ +|
T Consensus 231 ~S~h~~~~~-~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI----~~~~~~~~~~~g~~ 303 (312)
T PRK08999 231 ASCHDAEEL-ARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL----GPGDLEEAREHGAQ 303 (312)
T ss_pred EecCCHHHH-HHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC----CHHHHHHHHHhCCC
Confidence 455677777 66778899999999884 22 2355666655432 4566663 4 34678888877 67
Q ss_pred eeEEe
Q 012335 248 AFMVA 252 (466)
Q Consensus 248 gImia 252 (466)
||-+-
T Consensus 304 gva~i 308 (312)
T PRK08999 304 GIAGI 308 (312)
T ss_pred EEEEE
Confidence 77654
No 399
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=25.98 E-value=1.4e+02 Score=28.92 Aligned_cols=82 Identities=15% Similarity=0.324 Sum_probs=46.0
Q ss_pred cCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHH
Q 012335 191 GVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQK 270 (466)
Q Consensus 191 ~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk 270 (466)
++..|++.|.+--.++... .+.....+ .++.+++.. ..+.+.+.+...|.+.|+.| |+.. ...+
T Consensus 31 a~~~G~g~vt~~~~~~~~~------~~~~~~pe-~i~~~~~~~-~~~~~~~~~~~~d~v~ig~g-l~~~-------~~~~ 94 (254)
T cd01171 31 ALRAGAGLVTVATPPEAAA------VIKSYSPE-LMVHPLLET-DIEELLELLERADAVVIGPG-LGRD-------EEAA 94 (254)
T ss_pred HHHHccCEEEEEECHhhHH------HHHhcCce-eeEeccccc-chHHHHhhhccCCEEEEecC-CCCC-------HHHH
Confidence 3457888776644343222 22221111 244455441 12333444556799999876 4432 3566
Q ss_pred HHHHHHHHcCCCeEEeeh
Q 012335 271 VMIHKANIQGKPVVTATQ 288 (466)
Q Consensus 271 ~ii~~~~~~gkPvi~ATq 288 (466)
.+++.+++.++|+++-+-
T Consensus 95 ~i~~~~~~~~~pvVlDa~ 112 (254)
T cd01171 95 EILEKALAKDKPLVLDAD 112 (254)
T ss_pred HHHHHHHhcCCCEEEEcH
Confidence 788888888999887643
No 400
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.93 E-value=1.5e+02 Score=30.83 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCC--------ChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-CCeeE
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVR--------KGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-SDAFM 250 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~--------sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-sDgIm 250 (466)
|-++.+++ .-|.+.|+|||++|-|- ++-.+..++.+.......+.-+.-| ..+|+.+++.+ +|||-
T Consensus 246 S~Hs~~e~-~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI----~~~ni~~l~~~Ga~gVA 320 (347)
T PRK02615 246 STTNPEEM-AKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGI----DKSNIPEVLQAGAKRVA 320 (347)
T ss_pred ecCCHHHH-HHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC----CHHHHHHHHHcCCcEEE
Q ss_pred EeCCcccCcCCchhHHHHHHHH
Q 012335 251 VARGDLGMEIPIEKIFLAQKVM 272 (466)
Q Consensus 251 iaRgDLg~e~~~e~v~~~qk~i 272 (466)
+.++=...+=|......+.+.+
T Consensus 321 visaI~~a~dp~~~~~~l~~~l 342 (347)
T PRK02615 321 VVRAIMGAEDPKQATQELLKQL 342 (347)
T ss_pred EeHHHhCCCCHHHHHHHHHHHH
No 401
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=25.88 E-value=1.2e+02 Score=26.12 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=32.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCe
Q 012335 35 MNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPE 78 (466)
Q Consensus 35 ~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~Gpk 78 (466)
+..+||-+.-.++....+..+.|.+.++.+|. +++||-
T Consensus 3 ~~kirI~L~s~d~~~LD~~~~~Ive~akrtg~------~v~GPi 40 (104)
T COG0051 3 KQKIRIRLKSFDHRLLDQVCREIVETAKRTGA------DVKGPI 40 (104)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHHHHHhCC------eeeCCc
Confidence 34789999999999999999999999998886 566764
No 402
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=25.87 E-value=5.3e+02 Score=24.37 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=22.1
Q ss_pred HHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCC
Q 012335 184 KEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAK 222 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~ 222 (466)
.+++ +..++.|+|.|+++.- .-++...++++....+.
T Consensus 85 ~e~~-~~~~~~Gad~vvigs~-~l~dp~~~~~i~~~~g~ 121 (234)
T cd04732 85 LEDI-ERLLDLGVSRVIIGTA-AVKNPELVKELLKEYGG 121 (234)
T ss_pred HHHH-HHHHHcCCCEEEECch-HHhChHHHHHHHHHcCC
Confidence 3444 3446789999887653 23455556666665554
No 403
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=25.76 E-value=70 Score=30.39 Aligned_cols=30 Identities=13% Similarity=-0.014 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEeehhhHhh
Q 012335 264 KIFLAQKVMIHKANIQGKPVVTATQMLESM 293 (466)
Q Consensus 264 ~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM 293 (466)
++-.+|..+++.|+++|.|+|-.+.+=+|+
T Consensus 159 ~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~ 188 (197)
T PRK12339 159 EYRTIMDYSIADARGYNIKVIDTDNYREAR 188 (197)
T ss_pred HHHHHHHHHHHHHHHcCCCeecCccHHHHH
Confidence 344699999999999999999998876664
No 404
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=25.66 E-value=1.5e+02 Score=29.62 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=42.1
Q ss_pred cHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHH--HhcHHHHHhc-CCeeEEe
Q 012335 183 DKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEG--VANFDDVLAN-SDAFMVA 252 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~a--v~nideI~~~-sDgImia 252 (466)
+.+.+ ..|.+.|+|||.+.-+ ++++++++.+.+. .+++++| .-| .+|+.+++++ +|+|-++
T Consensus 187 t~eea-~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~---~~ipi~A----sGGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 187 SLEEA-EEAAEAGADIIMLDNM-KPEEIKEAVQLLK---GRVLLEA----SGGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred CHHHH-HHHHHcCCCEEEECCC-CHHHHHHHHHHhc---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEeC
Confidence 44556 5678999999999875 4467777666553 2344444 223 4789999988 8999884
No 405
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=25.62 E-value=3.7e+02 Score=27.47 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=21.1
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCCceEEE
Q 012335 12 KIVCTLGPASRSVEMAEKLLRAGMNVARF 40 (466)
Q Consensus 12 kIi~TiGp~~~~~~~l~~li~~G~~v~Ri 40 (466)
.|+..=||-+.+.+.++++.++|.=.+=+
T Consensus 15 Pv~~asg~~~~~~~~~~~~~~~g~Gavv~ 43 (334)
T PRK07565 15 PLVASASPLSESVDNVKRLEDAGAGAVVL 43 (334)
T ss_pred CCEecCcCCCCCHHHHHHHHHCCCeEEEE
Confidence 45555688888889999988887655433
No 406
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=25.60 E-value=3.7e+02 Score=26.82 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=60.7
Q ss_pred hcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc-------CCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCC
Q 012335 182 KDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH-------AKNILLMSKVENLEGVANFDDVLANSDAFMVARG 254 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~-------~~~~~IiaKIE~~~av~nideI~~~sDgImiaRg 254 (466)
.|...+...+.+.|+..+.+.- .+.++...+.++.... |-++.- ..-++.+.++.+.+.+.. |-=++|=|
T Consensus 17 ~d~~~vi~~a~~~gv~~~~~~g-~~~~~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~~~~~~~l~~~~~~-~~~vvaIG 93 (256)
T COG0084 17 EDRDEVIARAREAGVKKMVVVG-TDLEDFKRALELAEKYPNVYAAVGVHPLD-ADEHSEEDLEELEQLAEH-HPKVVAIG 93 (256)
T ss_pred CCHHHHHHHHHHcCCcEEEEee-cCHHHHHHHHHHHHhCCCeEEEEeeCCCc-cccccHHHHHHHHHHHhc-CCCeEEEE
Confidence 3444443678889998877664 3455566555555433 222223 222344555555555543 34455557
Q ss_pred cccCcCCchhH--HHHHH----HHHHHHHHcCCCeEEee
Q 012335 255 DLGMEIPIEKI--FLAQK----VMIHKANIQGKPVVTAT 287 (466)
Q Consensus 255 DLg~e~~~e~v--~~~qk----~ii~~~~~~gkPvi~AT 287 (466)
.-|.+.-...- ...|+ +-++.|++.++|+++=+
T Consensus 94 EiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~ 132 (256)
T COG0084 94 EIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHT 132 (256)
T ss_pred ecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 77777655333 23454 56788999999999865
No 407
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=25.56 E-value=3e+02 Score=27.84 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 210 LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
.+.+++.|.+.|..+.|-+.=+. ..++.+...|.|+.+-. + +..+.++-+.|+++++|.|.|-
T Consensus 75 aea~~~~L~eLNp~V~V~~~~~~-----~~~~~l~~fdvVV~~~~------~----~~~~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 75 AEASQARLAELNPYVPVTVSTGP-----LTTDELLKFQVVVLTDA------S----LEDQLKINEFCHSPGIKFISAD 137 (286)
T ss_pred HHHHHHHHHHHCCCCEEEEEecc-----CCHHHHhcCCEEEEecC------C----HHHHHHHHHHHHHcCCEEEEEe
Confidence 34556778888887776554333 23466777887777622 2 2567789999999999988763
No 408
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=25.55 E-value=2.5e+02 Score=26.38 Aligned_cols=44 Identities=23% Similarity=0.570 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEEEcCCchHH-------HHHHhc---CCCCCEEEE
Q 012335 335 LESLASSAVRTANCI--KAALILVLTRGGTTA-------KMVSKY---RPSMPILSV 379 (466)
Q Consensus 335 ~~~ia~~av~~a~~~--~a~~Ivv~T~sG~ta-------~~vSk~---RP~~PIiAv 379 (466)
.+.|-.++..++..+ +.| |+++-+.|+.| .++.|| ||..|-+|+
T Consensus 24 ~~~I~~aa~~i~~~l~~G~K-vl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaL 79 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNK-VLACGNGGSAADAQHFAAELTGRFEKERPSLPAIAL 79 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCE-EEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEe
Confidence 345555555555544 545 67777777654 344454 899999999
No 409
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.44 E-value=1.1e+02 Score=26.55 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=27.0
Q ss_pred hccCcCCCcEEEEcCCC--ChhhHHHHHHHHHhcCC-CceEEEe
Q 012335 189 NWGVPNKIDMIALSFVR--KGSDLVEVRNLLRVHAK-NILLMSK 229 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~--sa~dv~~~r~~l~~~~~-~~~IiaK 229 (466)
+.+.+.++|+|++|+.. +.+.+.++.+.|.+.+. ++.+++=
T Consensus 44 ~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 44 EAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred HHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 55678999999999864 34455555555666543 5665553
No 410
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=25.42 E-value=2.1e+02 Score=24.65 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=27.5
Q ss_pred hhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEe
Q 012335 118 KKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVL 161 (466)
Q Consensus 118 ~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l 161 (466)
.++.+.+++||+|..-.|-. -+|.+++ ++.+..++-.|..+
T Consensus 47 ~~~~~~Lk~Gd~VvT~gGi~-G~Vv~i~--~~~v~lei~~g~~i 87 (106)
T PRK05585 47 KKMLSSLAKGDEVVTNGGII-GKVTKVS--EDFVIIELNDDTEI 87 (106)
T ss_pred HHHHHhcCCCCEEEECCCeE-EEEEEEe--CCEEEEEECCCeEE
Confidence 57778889999998888755 5566664 45666655444343
No 411
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=25.42 E-value=1.1e+02 Score=26.61 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=27.9
Q ss_pred hcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 237 ANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 237 ~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
.++++++..+|.++ |++ .|..-...++.|.++|+|+++.|
T Consensus 59 ~~l~~~~~~~DVvI----DfT-------~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 59 DDLEELLEEADVVI----DFT-------NPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp S-HHHHTTH-SEEE----EES--------HHHHHHHHHHHHHHT-EEEEE-
T ss_pred hhHHHhcccCCEEE----EcC-------ChHHhHHHHHHHHhCCCCEEEEC
Confidence 57888888888555 332 56777889999999999999988
No 412
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=25.36 E-value=1.2e+02 Score=30.12 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=48.7
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHh
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLA 244 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~ 244 (466)
.+.|.+.+ +.=++.|+||+.--++-+++.+.+..+.+.+.|-.++|++=|=-.....++.-+.+
T Consensus 146 ~~~~~~~L-~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~ 209 (274)
T cd00537 146 LEEDIKRL-KRKVDAGADFIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAK 209 (274)
T ss_pred HHHHHHHH-HHHHHCCCCEEeecccccHHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHH
Confidence 35667777 55578899999999999999999999999888877888887744444445544444
No 413
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=25.34 E-value=1.7e+02 Score=28.13 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=40.4
Q ss_pred cEEeecch-hhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEe-------eCeEecCCCccccC
Q 012335 111 KMISMSYK-KLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCE-------NSAVLGERKNVNLP 170 (466)
Q Consensus 111 ~~i~v~~~-~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~-------~gG~l~~~Kgvnlp 170 (466)
..+.+..+ .+++.+++||.|-+|. +.|.|.+++ ++.+.+-+. +=|.++.+..|||-
T Consensus 22 ~~l~i~~~~~~~~~l~~G~SIAvnG--vCLTV~~i~--~~~f~vdvipETl~~TtL~~l~~G~~VNLE 85 (200)
T TIGR00187 22 ISLVVNLADHMLDDLELGDSIAVNG--VCLTVTEIN--KNHFSVDLSPETLKRTNLGDLKVGTWVNIE 85 (200)
T ss_pred EEEEEEeChHHhcccccCCEEEECc--EEEEEEEEc--CCEEEEEEEHHHhhhcchhhCcCCCEEEEc
Confidence 35666665 6788999999999987 779999884 566666553 22566666777764
No 414
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=25.28 E-value=2.2e+02 Score=28.93 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCC
Q 012335 19 PASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGI 66 (466)
Q Consensus 19 p~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~ 66 (466)
.-+.+.+.+++.+++|.+-.=++-||-++++.-+.-+.+-+.+...|.
T Consensus 85 DHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv 132 (285)
T PRK07709 85 DHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNV 132 (285)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 334578999999999999999999999988866666555555555554
No 415
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=25.26 E-value=6.2e+02 Score=24.40 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=26.8
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCC
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKN 223 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~ 223 (466)
+.+.+.|+|+|=+.+ ....++.++++.+.+.|-.
T Consensus 22 ~~~a~~Gf~~VEl~~-~~~~~~~~~~~~l~~~gl~ 55 (258)
T PRK09997 22 EKAAQCGFRGVEFMF-PYDYDIEELKQVLASNKLE 55 (258)
T ss_pred HHHHHhCCCEEEEcC-CCCCCHHHHHHHHHHcCCc
Confidence 677899999998866 3446899999999887643
No 416
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.23 E-value=5.4e+02 Score=25.81 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=65.1
Q ss_pred CChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHh--cCCeeEEeCCcc
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLA--NSDAFMVARGDL 256 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~--~sDgImiaRgDL 256 (466)
++..+...+.+...+.++++|=-|+- .+|...++++-.. ..++|++ =|+....+.+.++++ ..|++.+....+
T Consensus 188 ~~~~~A~~~~~~l~~~~l~~iEeP~~--~~d~~~~~~L~~~--~~ipIa~-~E~~~~~~~~~~~~~~~~~d~v~~~~~~~ 262 (316)
T cd03319 188 WTPEEAVELLRELAELGVELIEQPVP--AGDDDGLAYLRDK--SPLPIMA-DESCFSAADAARLAGGGAYDGINIKLMKT 262 (316)
T ss_pred cCHHHHHHHHHHHHhcCCCEEECCCC--CCCHHHHHHHHhc--CCCCEEE-eCCCCCHHHHHHHHhcCCCCEEEEecccc
Confidence 44444333323344678999988874 4566666664332 3467666 488778888888888 579999987776
Q ss_pred cCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 257 GMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 257 g~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
|- + .--.++...|.++|.++..-+
T Consensus 263 GG---i----~~~~~~~~~a~~~gi~~~~~~ 286 (316)
T cd03319 263 GG---L----TEALRIADLARAAGLKVMVGC 286 (316)
T ss_pred CC---H----HHHHHHHHHHHHcCCCEEEEC
Confidence 53 1 233577899999999999854
No 417
>PLN02282 phosphoglycerate kinase
Probab=25.12 E-value=95 Score=33.08 Aligned_cols=204 Identities=18% Similarity=0.216 Sum_probs=111.5
Q ss_pred HHHHHHHHHhCCceEEEecCCCC-HH---HHHHHHHHHHHHHHHcCCceEEEecCCCCeeEeeecCCCCcEEecCCCEEE
Q 012335 24 VEMAEKLLRAGMNVARFNFSHGS-HA---YHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTGFLKDGKPIQLVQGQEIT 99 (466)
Q Consensus 24 ~~~l~~li~~G~~v~RiN~shg~-~~---~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~~~~i~l~~G~~v~ 99 (466)
...|+.|++.|..+.= +||-. +. ....+-.-.+..++.+++++...-|.-||+.+- .+ -.|++|+.+.
T Consensus 46 lpTI~~l~~~gakvVl--~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~fv~d~~g~~~~~-~i-----~~l~~G~ilL 117 (401)
T PLN02282 46 VPTIKYLMGHGARVIL--CSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDCIGEEVEK-LV-----AELPEGGVLL 117 (401)
T ss_pred HHHHHHHHHCCCeEEE--EecCCCCCCCCcccCHHHHHHHHHHHHCCCeEECCCCCCHHHHH-HH-----hcCCCCCEEE
Confidence 4589999999987654 58833 31 122233334445667899998888999988763 11 1467777776
Q ss_pred EEeCCCCCCCccEEeecchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeCeEecCCCccccCCcccCCCCC
Q 012335 100 ISTDYSLKGDEKMISMSYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENSAVLGERKNVNLPGVIVDLPTL 179 (466)
Q Consensus 100 l~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kgvnlp~~~~~lp~l 179 (466)
|-.---..+++ -+.++|.+.+.+--.||++|. |-+- +...-++ -|+ |. -+|
T Consensus 118 LEN~RF~~~E~----~~~~~~a~~LA~l~DvyVNDA---Fg~a--HR~haS~-------------~gi--~~---~l~-- 168 (401)
T PLN02282 118 LENVRFYKEEE----KNDPEFAKKLASLADVYVNDA---FGTA--HRAHAST-------------EGV--AK---YLK-- 168 (401)
T ss_pred EeccccCcccc----cCHHHHHHHHHHhCcEeeech---hhhh--hhcccch-------------hhh--hh---hcC--
Confidence 64320011111 155678888777555999994 2221 1111011 011 10 000
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCce--EE--EeecCHHHHhcHHHHHhcCCeeEEeCC-
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNIL--LM--SKVENLEGVANFDDVLANSDAFMVARG- 254 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~--Ii--aKIE~~~av~nideI~~~sDgImiaRg- 254 (466)
.. +...-+ ..++..+.+.+..- .++. |+ ||+.+.-++ ++.++..+|.+++|=|
T Consensus 169 -------------~~---~aG~lm---ekEl~~L~~~l~~p-~rP~vaIlGGaKvsdKi~v--i~~Ll~kvD~lliGG~m 226 (401)
T PLN02282 169 -------------PS---VAGFLM---QKELDYLVGAVANP-KKPFAAIVGGSKVSTKIGV--IESLLEKVDILLLGGGM 226 (401)
T ss_pred -------------cc---ccchHH---HHHHHHHHHHhcCC-CCCeEEEEcCCcHHhHHHH--HHHHHHhhhhheeccHH
Confidence 00 000001 12455555555321 1222 22 577776655 7788888999998821
Q ss_pred ------cccCcCCc----hhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 255 ------DLGMEIPI----EKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 255 ------DLg~e~~~----e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
-.|.++|. ++....-++|++++.+.|+.+++-
T Consensus 227 a~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~lP 268 (401)
T PLN02282 227 IFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLLLP 268 (401)
T ss_pred HHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEeCC
Confidence 13555654 244444568999999998866543
No 418
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.09 E-value=4.7e+02 Score=27.08 Aligned_cols=70 Identities=13% Similarity=0.300 Sum_probs=42.8
Q ss_pred ChhcHHHHHhccCcCCC--cEEEEcCCC-ChhhHHHHHHHHHhcCCCceEEEe-ecCHHHHhcHHHHHhcCCeeEEe
Q 012335 180 TEKDKEDILNWGVPNKI--DMIALSFVR-KGSDLVEVRNLLRVHAKNILLMSK-VENLEGVANFDDVLANSDAFMVA 252 (466)
Q Consensus 180 te~D~~di~~~~~~~~~--d~v~~sfV~-sa~dv~~~r~~l~~~~~~~~IiaK-IE~~~av~nideI~~~sDgImia 252 (466)
++++.+-+ ...++.|+ |+|++--.. ..+.+.++-+.+.+.-.+..||++ +-|.+...++.+ .=+|++.++
T Consensus 95 ~~~~~~~~-~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg 168 (326)
T PRK05458 95 KDDEYDFV-DQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVG 168 (326)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEEC
Confidence 44555555 44467754 999982111 123344434444444456889997 999888766655 238999987
No 419
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.06 E-value=5.9e+02 Score=26.65 Aligned_cols=105 Identities=14% Similarity=0.026 Sum_probs=59.1
Q ss_pred ChhcHHHHHhccCc--CCCcEEEEc--CCCChhhHHHHHHHHHhcCCCceEE-EeecCHHHHhcHHHHHhcCCeeEEeCC
Q 012335 180 TEKDKEDILNWGVP--NKIDMIALS--FVRKGSDLVEVRNLLRVHAKNILLM-SKVENLEGVANFDDVLANSDAFMVARG 254 (466)
Q Consensus 180 te~D~~di~~~~~~--~~~d~v~~s--fV~sa~dv~~~r~~l~~~~~~~~Ii-aKIE~~~av~nideI~~~sDgImiaRg 254 (466)
++.|.+-+ +..++ .|+|+|.+- .=.|...++.++. +++.-.+..|| --+-|+++.++|-+ .=+|++-||=|
T Consensus 106 ~~~d~er~-~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIG 181 (346)
T PRK05096 106 SDADFEKT-KQILALSPALNFICIDVANGYSEHFVQFVAK-AREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIG 181 (346)
T ss_pred CHHHHHHH-HHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 55666666 44444 599998763 3233333333433 44333445544 46899998876543 34899987744
Q ss_pred cccCcC-------CchhHHHHHHHHHHHHHHcCCCeEEeehh
Q 012335 255 DLGMEI-------PIEKIFLAQKVMIHKANIQGKPVVTATQM 289 (466)
Q Consensus 255 DLg~e~-------~~e~v~~~qk~ii~~~~~~gkPvi~ATqm 289 (466)
-=++-. +.+.+ .+-....+.|++.|+|+|--.-+
T Consensus 182 pGSiCtTr~vtGvG~PQl-tAV~~~a~~a~~~gvpiIADGGi 222 (346)
T PRK05096 182 PGSVCTTRVKTGVGYPQL-SAVIECADAAHGLGGQIVSDGGC 222 (346)
T ss_pred CCccccCccccccChhHH-HHHHHHHHHHHHcCCCEEecCCc
Confidence 322222 22222 22345666778889998854443
No 420
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=25.02 E-value=2.2e+02 Score=26.33 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHhcHHHHHh--cCC--eeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 234 EGVANFDDVLA--NSD--AFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 234 ~av~nideI~~--~sD--gImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
.+++.+++.+. ..| -||+|=.|+....+.+++..-.+.|+..+++.|..+++-
T Consensus 58 ~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 58 QGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 34445555443 246 567788898777888999999999999999988776654
No 421
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=24.98 E-value=6e+02 Score=24.14 Aligned_cols=125 Identities=17% Similarity=0.166 Sum_probs=73.2
Q ss_pred CChhcHHHHHhccCcCCCcEEEEc-CCCChhhHHHHHHHHHhcCCCceEEEeecC-HHHHhc-HHHHHhc-CCeeEE--e
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALS-FVRKGSDLVEVRNLLRVHAKNILLMSKVEN-LEGVAN-FDDVLAN-SDAFMV--A 252 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~s-fV~sa~dv~~~r~~l~~~~~~~~IiaKIE~-~~av~n-ideI~~~-sDgImi--a 252 (466)
++..++..+.+...+.|+|+|=+. ..-+.++...++.+...... ..+.+..-. .+.++. ++.+... .|.+.+ +
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCc
Confidence 677777777677788999999998 45667778777776554332 444443322 222222 2222222 464443 3
Q ss_pred CCcccC----cCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 253 RGDLGM----EIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 253 RgDLg~----e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
-.|+-. ....++....-.+++..+++.|..|.+.... .++.+.+++.+++..
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~------~~~~~~~~~~~~~~~ 145 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCED------ASRTDPEELLELAEA 145 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETT------TGGSSHHHHHHHHHH
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccc------cccccHHHHHHHHHH
Confidence 333111 1223455666788899999999999765432 235666777777666
No 422
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=24.96 E-value=1.7e+02 Score=25.21 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcC---------Cc-hHHHHHHh-cCCCCCEEEE
Q 012335 337 SLASSAVRTANCIKAALILVLTR---------GG-TTAKMVSK-YRPSMPILSV 379 (466)
Q Consensus 337 ~ia~~av~~a~~~~a~~Ivv~T~---------sG-~ta~~vSk-~RP~~PIiAv 379 (466)
..+...++.|.+.+++.||+-++ -| +++..+.+ -+|.|||+.+
T Consensus 90 ~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 90 DVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred cHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEE
Confidence 34556667789999999988764 13 34444444 3446999998
No 423
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=24.95 E-value=4.4e+02 Score=27.05 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=72.0
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhc---CCCceE---------EEeecCHHHHhcHHHHHhc
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVH---AKNILL---------MSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~---~~~~~I---------iaKIE~~~av~nideI~~~ 245 (466)
.+|..|.++|.++|.+.|+.. +|-+..+.....+.....+. +..... .--+.++++.+=+++++..
T Consensus 71 ~YT~~di~elv~yA~~rgI~v--IPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E 148 (329)
T cd06568 71 YYTQEDYKDIVAYAAERHITV--VPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRE 148 (329)
T ss_pred cCCHHHHHHHHHHHHHcCCEE--EEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHH
Confidence 589999999989999999995 48888888887755432211 111111 1124567676666666554
Q ss_pred ------CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehh
Q 012335 246 ------SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQM 289 (466)
Q Consensus 246 ------sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqm 289 (466)
+..|-|| ||=....+.+......+++....++.||.+++=..+
T Consensus 149 ~~~~f~~~~iHiG-gDE~~~~~~~~~~~f~~~~~~~v~~~Gk~~~~W~d~ 197 (329)
T cd06568 149 LAALTPGPYIHIG-GDEAHSTPHDDYAYFVNRVRAIVAKYGKTPVGWQEI 197 (329)
T ss_pred HHHhCCCCeEEEe-cccCCCCchHHHHHHHHHHHHHHHHCCCeEEEECcc
Confidence 4577777 664333445566677788888899999988754443
No 424
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=24.86 E-value=4.5e+02 Score=28.23 Aligned_cols=147 Identities=19% Similarity=0.171 Sum_probs=87.5
Q ss_pred HHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhhhhccchhhHHHHHhhCCCCCCcHHHHHHHHHHHHHhcCC
Q 012335 272 MIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAAENFINYGDLFKKIMETAPVPMSPLESLASSAVRTANCIKA 351 (466)
Q Consensus 272 ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a 351 (466)
-+..+.....|++.-|+.++||.- |+.+++ .++.+ . ...+|........+-.....++.+...
T Consensus 52 ~~~~~~~~i~~~~~~TPl~~s~~l---------S~~~g~---~vyLK--~---E~lQpsgSFK~RGa~~~~~kla~~~~~ 114 (457)
T KOG1250|consen 52 DISSAHFKIYPVIVETPLLKSVAL---------SKKAGM---PVYLK--R---EDLQPSGSFKIRGAGNALQKLAKQQKK 114 (457)
T ss_pred hhhhhhhccccceecccchhhhhh---------hhhcCC---ceEEE--e---hhcccccceehhhHHHHHHHHHHhhhc
Confidence 344555667889999999988752 222221 11111 1 111222223345566677777777755
Q ss_pred cEEEEEcCCchHHHH--HHhcCCCCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEcCCCCCCCCccCHHHHH
Q 012335 352 ALILVLTRGGTTAKM--VSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLSSGSARASDEESTEETI 429 (466)
Q Consensus 352 ~~Ivv~T~sG~ta~~--vSk~RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~~~~~~~~~~~~~e~~i 429 (466)
.-+++ +.-|+-|+. .|-.+-.+|.-.| +|. + +....-+++. .-|-.-++..+ +.++.-
T Consensus 115 ~gVia-sSaGNha~a~Ayaa~~LgipaTIV-mP~---~------tp~~kiq~~~-nlGA~Vil~G~--------~~deAk 174 (457)
T KOG1250|consen 115 AGVIA-SSAGNHAQAAAYAARKLGIPATIV-MPV---A------TPLMKIQRCR-NLGATVILSGE--------DWDEAK 174 (457)
T ss_pred CceEE-ecCccHHHHHHHHHHhcCCceEEE-ecC---C------ChHHHHHHHh-ccCCEEEEecc--------cHHHHH
Confidence 54444 555776654 4556778898777 663 1 2233334444 33666556643 456777
Q ss_pred HHHHHHHHHcCC--CCCCCEEEEEEecC
Q 012335 430 EFALQHAKAKGL--CRPGDSVVALHRMH 455 (466)
Q Consensus 430 ~~al~~~~~~G~--~~~GD~VVvv~g~g 455 (466)
.+|...+++.|| +.+-|.--+..|.|
T Consensus 175 ~~a~~lAke~gl~yI~pfDhP~I~aGqg 202 (457)
T KOG1250|consen 175 AFAKRLAKENGLTYIPPFDHPDIWAGQG 202 (457)
T ss_pred HHHHHHHHhcCceecCCCCCchhhcCcc
Confidence 789999999997 77888887777764
No 425
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=24.86 E-value=3.8e+02 Score=25.59 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=45.1
Q ss_pred CCeEEEEec-----CCCCCC-HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCce-EEEe
Q 012335 9 PKTKIVCTL-----GPASRS-VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILC-AVML 72 (466)
Q Consensus 9 r~tkIi~Ti-----Gp~~~~-~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i-~i~~ 72 (466)
.++|||++- .|+..+ .+.+++|...|.|+.|+=..--+.++..++++..++.....+.|+ ++-+
T Consensus 112 ~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~M 182 (225)
T cd00502 112 GNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIPLIAINM 182 (225)
T ss_pred CCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 479999998 221111 246788999999999999887788888888877777655444553 4433
No 426
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=24.85 E-value=3.1e+02 Score=27.76 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCce
Q 012335 20 ASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILC 68 (466)
Q Consensus 20 ~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i 68 (466)
-+.+.+.+++-+++|.+-.=+.-||-+.|+..+.-..+.+.+..+|.++
T Consensus 83 H~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 83 HGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred CCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3457899999999999999999999999887777777777777777655
No 427
>PLN02389 biotin synthase
Probab=24.73 E-value=1.8e+02 Score=30.68 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=36.5
Q ss_pred eEEEEecCCCCCCHHHHHHHHHhCCceEEEecCC--------CCHHHHHHHHHHHHHHHHHcCCce
Q 012335 11 TKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSH--------GSHAYHQETLDNLRTAMNNTGILC 68 (466)
Q Consensus 11 tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~sh--------g~~~~~~~~i~~ir~~~~~~~~~i 68 (466)
-.|.+|.|+ .+.|.+++|.++|++.+-+|+.= .+...+.+.++.++.+.+ .|.++
T Consensus 167 l~i~~s~G~--l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~-~Gi~v 229 (379)
T PLN02389 167 MEVCCTLGM--LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVRE-AGISV 229 (379)
T ss_pred cEEEECCCC--CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHH-cCCeE
Confidence 356788886 47899999999999988877761 011234556666666643 45443
No 428
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=24.72 E-value=1.9e+02 Score=24.06 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHHhcCCCCCEEEE
Q 012335 338 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 379 (466)
Q Consensus 338 ia~~av~~a~~~~a~~Ivv~T~s---------G~ta~~vSk~RP~~PIiAv 379 (466)
.+...++.|++.+++.||+-++. |+++..+.++ ..||++.+
T Consensus 82 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~-~~~pvlvv 131 (132)
T cd01988 82 IASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLES-APCDVAVV 131 (132)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhc-CCCCEEEe
Confidence 44556667888999988877653 4455566544 45999876
No 429
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=24.70 E-value=95 Score=34.72 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=39.8
Q ss_pred CHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 012335 23 SVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTK 75 (466)
Q Consensus 23 ~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~ 75 (466)
+.+++++|.++|+++.|+-.- +. +-.+.+.+||+.....|.++.++.|+.
T Consensus 43 tv~Qi~~l~~aGceiVRvtv~--~~-~~a~~l~~I~~~l~~~G~~iPLVADIH 92 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVRLTTQ--GV-REAENLMNINIGLRSQGYMVPLVADVH 92 (611)
T ss_pred HHHHHHHHHHcCCCEEEEcCC--CH-HHHHhHHHHHHHHhhcCCCCCEEEecC
Confidence 578899999999999999442 22 234578888888777899999999986
No 430
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=24.54 E-value=1.1e+02 Score=37.85 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=57.3
Q ss_pred cCcCCCcEEEEcCCCC---------------h--hhHHHHHHHHHhcC--CCceEEEeecCHHHHhcHHHHHhc----CC
Q 012335 191 GVPNKIDMIALSFVRK---------------G--SDLVEVRNLLRVHA--KNILLMSKVENLEGVANFDDVLAN----SD 247 (466)
Q Consensus 191 ~~~~~~d~v~~sfV~s---------------a--~dv~~~r~~l~~~~--~~~~IiaKIE~~~av~nideI~~~----sD 247 (466)
..+.|+|+|.++=-.- + .-+.++.+.|...| .++.+++ --++.+-.+++.+ +|
T Consensus 1016 vaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a----~Ggl~t~~Dv~kA~aLGAd 1091 (1485)
T PRK11750 1016 VAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQV----DGGLKTGLDVIKAAILGAE 1091 (1485)
T ss_pred hhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEE----cCCcCCHHHHHHHHHcCCc
Confidence 3557899998875322 1 13666777887776 3466665 2345555555554 79
Q ss_pred eeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeeh
Q 012335 248 AFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQ 288 (466)
Q Consensus 248 gImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATq 288 (466)
++-+|++-|-+ ++= .+.+.|+...+|+.+|||
T Consensus 1092 ~~~~gt~~lia-lGC--------i~~r~Ch~~~CPvGiaTq 1123 (1485)
T PRK11750 1092 SFGFGTGPMVA-LGC--------KYLRICHLNNCATGVATQ 1123 (1485)
T ss_pred ccccchHHHHH-cCC--------HHHHhhcCCCCCcEEecc
Confidence 99999887643 332 367789999999999999
No 431
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.53 E-value=1.3e+02 Score=25.54 Aligned_cols=39 Identities=21% Similarity=0.144 Sum_probs=26.1
Q ss_pred hccCcCCCcEEEEcCC--CChhhHHHHHHHHHhcCC-CceEE
Q 012335 189 NWGVPNKIDMIALSFV--RKGSDLVEVRNLLRVHAK-NILLM 227 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV--~sa~dv~~~r~~l~~~~~-~~~Ii 227 (466)
+.+.+.++|+|++|+. .+..++.++.+.+++.+. ++.|+
T Consensus 44 ~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~ 85 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL 85 (119)
T ss_pred HHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE
Confidence 4567899999999985 455556666666666554 45433
No 432
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=24.51 E-value=1.5e+02 Score=23.71 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCCCCCCEEEEEEe-cCCC
Q 012335 431 FALQHAKAKGLCRPGDSVVALHR-MHVA 457 (466)
Q Consensus 431 ~al~~~~~~G~~~~GD~VVvv~g-~g~t 457 (466)
.++..+.+.|.+++||+|++++- .|.+
T Consensus 55 ~~L~~~~~~g~~~~Gd~vl~~~~G~G~~ 82 (90)
T PF08541_consen 55 INLADALEEGRIKPGDRVLLVGFGAGFS 82 (90)
T ss_dssp HHHHHHHHTTSSCTTEEEEEEEEETTTE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEEEhhhe
Confidence 36678999999999999998774 3544
No 433
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.39 E-value=3.6e+02 Score=25.12 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=41.0
Q ss_pred hccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCH-HHHhcHHHHHh-cCCeeEEeCC
Q 012335 189 NWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENL-EGVANFDDVLA-NSDAFMVARG 254 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~-~av~nideI~~-~sDgImiaRg 254 (466)
+.+.+.|+|+|.+.+..+...+.++.+.+.+.| +++++-+-++ .-++.+....+ -+|.+-+.+|
T Consensus 70 ~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg 135 (206)
T TIGR03128 70 EQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTG 135 (206)
T ss_pred HHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCC
Confidence 455789999999888766556777777777654 5666544222 12233344444 4788887665
No 434
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.38 E-value=84 Score=31.61 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=27.9
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEE
Q 012335 348 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 379 (466)
Q Consensus 348 ~~~a~~Ivv~T~sG~ta~~vSk----~RP~~PIiAv 379 (466)
...++.+++-|.+|+||..+|. ..|.++.+.+
T Consensus 153 ~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~i 188 (272)
T PRK02231 153 SQRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIAL 188 (272)
T ss_pred EEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEE
Confidence 3478999999999999999998 5788888888
No 435
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=24.36 E-value=2.9e+02 Score=26.91 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEee---------cCHHHHhcHHHH--HhcCCeeEEeC
Q 012335 185 EDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKV---------ENLEGVANFDDV--LANSDAFMVAR 253 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKI---------E~~~av~nideI--~~~sDgImiaR 253 (466)
+.+ +.+.+.|+..++..- .+.++...+.++.+..+ ..|++-+ .+.+.++.++++ +.....+.|
T Consensus 18 ~~~-~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~--~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aI-- 91 (255)
T PF01026_consen 18 EVL-ERAREAGVSAIIIVS-TDPEDWERVLELASQYP--DRVYPALGIHPWEAHEVNEEDLEELEELINLNRPKVVAI-- 91 (255)
T ss_dssp HHH-HHHHHTTEEEEEEEE-SSHHHHHHHHHHHHHTT--TEEEEEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEE--
T ss_pred HHH-HHHHHcCCCEEEEcC-CCHHHhHHHHHHHhcCC--CeEEEEecCCcchhhhhhHHHHHHHHHHHHhccccceee--
Confidence 344 667789998885443 44457777777665532 2233332 244556677777 544556666
Q ss_pred CcccCcCC-c-hhHHHHH----HHHHHHHHHcCCCeEEeeh
Q 012335 254 GDLGMEIP-I-EKIFLAQ----KVMIHKANIQGKPVVTATQ 288 (466)
Q Consensus 254 gDLg~e~~-~-e~v~~~q----k~ii~~~~~~gkPvi~ATq 288 (466)
|.-|.+.. . +.-...| ++.++.|.++++||++-|.
T Consensus 92 GEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r 132 (255)
T PF01026_consen 92 GEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCR 132 (255)
T ss_dssp EEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred eeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecC
Confidence 56665552 1 2223555 4667889999999998774
No 436
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=24.35 E-value=1.5e+02 Score=28.63 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHhCCceEEEecCCCCHH-------HHHHHHHHHHH---HHHHcCCceEEEecCCCC
Q 012335 22 RSVEMAEKLLRAGMNVARFNFSHGSHA-------YHQETLDNLRT---AMNNTGILCAVMLDTKGP 77 (466)
Q Consensus 22 ~~~~~l~~li~~G~~v~RiN~shg~~~-------~~~~~i~~ir~---~~~~~~~~i~i~~Dl~Gp 77 (466)
...+.++.|-..|+|..||-+...... .-...++.+++ ++++.| +.+++|+-+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~g--i~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYG--IYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT---EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCC--CeEEEEeccC
Confidence 567889999999999999999963321 11223333333 334455 4567788754
No 437
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=24.29 E-value=1.2e+02 Score=28.78 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=27.9
Q ss_pred hccCcCCCcEEEEcC--CCChhhHHHHHHHHHhcCC--CceEEE
Q 012335 189 NWGVPNKIDMIALSF--VRKGSDLVEVRNLLRVHAK--NILLMS 228 (466)
Q Consensus 189 ~~~~~~~~d~v~~sf--V~sa~dv~~~r~~l~~~~~--~~~Iia 228 (466)
+.+.+.++|+|++|+ ..+..++.++.+.|++.+. +++|+.
T Consensus 127 ~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~v 170 (201)
T cd02070 127 EAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMV 170 (201)
T ss_pred HHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEE
Confidence 456789999999998 4555666666667776654 555543
No 438
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=24.26 E-value=1.3e+02 Score=31.83 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=0.0
Q ss_pred cHHHHHhccCcCCCcEEEEcCCCChh------hHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc----CCeeEEe
Q 012335 183 DKEDILNWGVPNKIDMIALSFVRKGS------DLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN----SDAFMVA 252 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~sfV~sa~------dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~----sDgImia 252 (466)
+.+|. ..+.+.|+|+|.+|-..-.. -+..+.++....+.++.||+- -|+.+=-+|+++ +|++++|
T Consensus 255 s~~dA-~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~d----GGIr~g~Di~KALaLGA~~V~iG 329 (381)
T PRK11197 255 DPEDA-RDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILAD----SGIRNGLDVVRMIALGADTVLLG 329 (381)
T ss_pred CHHHH-HHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEee----CCcCcHHHHHHHHHcCcCceeEh
Q ss_pred C
Q 012335 253 R 253 (466)
Q Consensus 253 R 253 (466)
|
T Consensus 330 r 330 (381)
T PRK11197 330 R 330 (381)
T ss_pred H
No 439
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=24.22 E-value=3.4e+02 Score=27.93 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCCceEEEeec----------------CHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHH
Q 012335 210 LVEVRNLLRVHAKNILLMSKVE----------------NLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMI 273 (466)
Q Consensus 210 v~~~r~~l~~~~~~~~IiaKIE----------------~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii 273 (466)
+..+++.|.+.+..+.+-+--+ .....+|++++++..|.|+-+-.. ....--+-
T Consensus 57 a~aaa~~L~~iNP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn----------~esR~L~~ 126 (307)
T cd01486 57 AEAAAERLKEIFPSIDATGIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDS----------RESRWLPT 126 (307)
T ss_pred HHHHHHHHHHHCCCcEEEEeeeeccccccccccccccccccCHHHHHHHHhhCCEEEECCCC----------HHHHHHHH
Confidence 4556677777776666544321 234678899999999999976322 23455666
Q ss_pred HHHHHcCCCeEEeehhhHh
Q 012335 274 HKANIQGKPVVTATQMLES 292 (466)
Q Consensus 274 ~~~~~~gkPvi~ATqmLeS 292 (466)
..|.+++||+|-|..=+++
T Consensus 127 ~~~~~~~k~~I~aalGfdg 145 (307)
T cd01486 127 LLSAAKNKLVINAALGFDS 145 (307)
T ss_pred HHHHHhCCcEEEEEeccce
Confidence 7889999999988554444
No 440
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=24.16 E-value=2.2e+02 Score=28.96 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=38.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 012335 11 TKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTK 75 (466)
Q Consensus 11 tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~ 75 (466)
+.+-.+++..-...+.++++.+.|.+.|.+.....+.++-.+.++.+|+ ..|.-+.|++|-.
T Consensus 110 ~~~~~~i~~~~~~~~~a~~~~~~G~~~~KvKvG~~~~~~d~~~v~air~---~~g~~~~l~vDaN 171 (320)
T PRK02714 110 LSYSALLPAGEAALQQWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLE---RLPAGAKLRLDAN 171 (320)
T ss_pred CceeeecCCCHHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHH---hcCCCCEEEEECC
Confidence 5666667544334456777889999999999866555554455555554 3444344555543
No 441
>PRK01712 carbon storage regulator; Provisional
Probab=24.15 E-value=1.9e+02 Score=22.81 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=21.5
Q ss_pred cCCCCEEEEeCCeEEEEEEEEecCCCeEEE
Q 012335 124 LRPGSVILCSDGTISLTVLDCAKELGLVRC 153 (466)
Q Consensus 124 v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~ 153 (466)
-++|+.|.|+| .|..+|.++. ++.+.-
T Consensus 6 Rk~gE~I~Igd-~I~I~V~~i~--~~~Vrl 32 (64)
T PRK01712 6 RKVGESLMIGD-DIEVTVLGVK--GNQVRI 32 (64)
T ss_pred ccCCCEEEeCC-CEEEEEEEEe--CCEEEE
Confidence 47899999999 6999999884 566653
No 442
>PRK06801 hypothetical protein; Provisional
Probab=24.10 E-value=2.6e+02 Score=28.34 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCC
Q 012335 20 ASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGI 66 (466)
Q Consensus 20 ~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~ 66 (466)
-+.+.+.+++-+++|.+.+=+.-||-+.++..+.-..+++.++.+|.
T Consensus 83 H~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv 129 (286)
T PRK06801 83 HGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGV 129 (286)
T ss_pred CCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34578999999999999999999999988877777777777776664
No 443
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=23.93 E-value=1.7e+02 Score=28.81 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCceEEEecCCC--------CHHHHHHHHHHHHHHHHHcCCceEEEecCCCCe
Q 012335 25 EMAEKLLRAGMNVARFNFSHG--------SHAYHQETLDNLRTAMNNTGILCAVMLDTKGPE 78 (466)
Q Consensus 25 ~~l~~li~~G~~v~RiN~shg--------~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~Gpk 78 (466)
+..++|+++|+++.=+|..-. ..+++.++...++...+..+.| |.+|+.=|+
T Consensus 28 ~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p--iSIDT~~~~ 87 (258)
T cd00423 28 EHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP--ISVDTFNAE 87 (258)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe--EEEeCCcHH
Confidence 344678999999999997554 4567777777777776655554 566776444
No 444
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=23.87 E-value=1.4e+02 Score=30.60 Aligned_cols=73 Identities=21% Similarity=0.170 Sum_probs=45.0
Q ss_pred CChhcHHHHHhccCcCCCcEEEEcC------CCC--------------hhhHHHHHHHHHhcCCCceEEEeecCHHHHhc
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALSF------VRK--------------GSDLVEVRNLLRVHAKNILLMSKVENLEGVAN 238 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~sf------V~s--------------a~dv~~~r~~l~~~~~~~~IiaKIE~~~av~n 238 (466)
++..|...+.+...+.|+|+|-+|- ... .+-...+|+.+ +++|++ -+.....+.
T Consensus 233 ~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-----~iPVi~-~G~i~t~~~ 306 (338)
T cd04733 233 FTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-----KTPLMV-TGGFRTRAA 306 (338)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc-----CCCEEE-eCCCCCHHH
Confidence 4555554443555678999998642 110 01222344433 456655 466667778
Q ss_pred HHHHHhc--CCeeEEeCCccc
Q 012335 239 FDDVLAN--SDAFMVARGDLG 257 (466)
Q Consensus 239 ideI~~~--sDgImiaRgDLg 257 (466)
+++.++. +|.|++||+=|+
T Consensus 307 a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 307 MEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred HHHHHHcCCCCeeeeChHhhh
Confidence 8888884 799999998665
No 445
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=23.87 E-value=1.7e+02 Score=29.77 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=37.6
Q ss_pred hccCcCCCcEEEEcCCC------ChhhHHHHHHHHHhcCCCceEEE--eecCHHHHhcHHHHHh--cCCeeEEeCCccc
Q 012335 189 NWGVPNKIDMIALSFVR------KGSDLVEVRNLLRVHAKNILLMS--KVENLEGVANFDDVLA--NSDAFMVARGDLG 257 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~------sa~dv~~~r~~l~~~~~~~~Iia--KIE~~~av~nideI~~--~sDgImiaRgDLg 257 (466)
+.+.+.|+|+|.+.--. ...+...++++-... +++|++ -|.+++ .+.+.++ -+|++|+|||=|+
T Consensus 154 ~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~~~~---da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 154 RIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNGDIFSPE---DAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeCCCCCHH---HHHHHHHhhCCCEEEEChhhhh
Confidence 45567899999885321 123444444443332 355554 455544 3445553 3899999999775
No 446
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.86 E-value=2e+02 Score=26.01 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=37.6
Q ss_pred CeEEEEecCCCC------CCHHHHHHHHHhCCceEEEecCCCCHHH--HHHHHHHHHHHHHH--cCCceEEE
Q 012335 10 KTKIVCTLGPAS------RSVEMAEKLLRAGMNVARFNFSHGSHAY--HQETLDNLRTAMNN--TGILCAVM 71 (466)
Q Consensus 10 ~tkIi~TiGp~~------~~~~~l~~li~~G~~v~RiN~shg~~~~--~~~~i~~ir~~~~~--~~~~i~i~ 71 (466)
+..+++.+|..+ ...+..+...++|++..=+-..++.... ...+++.+++..+. .+.|+-+.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy 119 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI 119 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE
Confidence 467787776654 3567788899999999876433322111 24455555555554 46665443
No 447
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=23.77 E-value=3e+02 Score=21.89 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=35.4
Q ss_pred CcEEecCCCEEEEEeCCCCCCCccEEee-cchhhhhccCC-CCEEEEe--CCeEEEEEEEEec-CCCeEEEEEeeC
Q 012335 88 KPIQLVQGQEITISTDYSLKGDEKMISM-SYKKLAEDLRP-GSVILCS--DGTISLTVLDCAK-ELGLVRCRCENS 158 (466)
Q Consensus 88 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v-~~~~~~~~v~~-Gd~i~id--dG~i~l~V~~v~~-~~~~i~~~v~~g 158 (466)
..+.+..|+.+.|.....-...+..-|. +...+ .. .+++.+. ++.-.|.+..+.. +.....|.+.|.
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i----~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~ 74 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAF----TETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNP 74 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEEC----ccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeC
Confidence 3578899999999876321112233333 32222 22 2234332 3344566655543 345588888764
No 448
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=23.70 E-value=5.2e+02 Score=27.73 Aligned_cols=104 Identities=16% Similarity=0.121 Sum_probs=54.9
Q ss_pred HHHHhccCcCCCcEEEEcC-CCChhhHHHHHHH---HHhcC---CCceEEEeecCHHHHhcH---------HHHHhc---
Q 012335 185 EDILNWGVPNKIDMIALSF-VRKGSDLVEVRNL---LRVHA---KNILLMSKVENLEGVANF---------DDVLAN--- 245 (466)
Q Consensus 185 ~di~~~~~~~~~d~v~~sf-V~sa~dv~~~r~~---l~~~~---~~~~IiaKIE~~~av~ni---------deI~~~--- 245 (466)
+.+ +..++.|+..|..|. ......+...|.. ....| ....|++|+-+++-...+ +.+.+.
T Consensus 86 ~~v-~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~i 164 (418)
T cd04742 86 GLV-DLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKI 164 (418)
T ss_pred HHH-HHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCC
Confidence 345 667899999998875 3332333233221 00001 124699999776544222 333322
Q ss_pred -------------CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHc--------CCCeEEeehhh
Q 012335 246 -------------SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQ--------GKPVVTATQML 290 (466)
Q Consensus 246 -------------sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~--------gkPvi~ATqmL 290 (466)
+|.|.+. .|=|-+.+-......--.|.+.+.+. ..|||.|.-+-
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~ 229 (418)
T cd04742 165 TEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG 229 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC
Confidence 5888887 77766665322222222233332222 48999998755
No 449
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=23.51 E-value=2e+02 Score=25.60 Aligned_cols=60 Identities=17% Similarity=0.211 Sum_probs=44.9
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHhCCceEEEecCC--CCHHHHHHHHHHHHHHHHHcCCceEE
Q 012335 9 PKTKIVCTLGPASRSVEMAEKLLRAGMNVARFNFSH--GSHAYHQETLDNLRTAMNNTGILCAV 70 (466)
Q Consensus 9 r~tkIi~TiGp~~~~~~~l~~li~~G~~v~RiN~sh--g~~~~~~~~i~~ir~~~~~~~~~i~i 70 (466)
...-++|.++ +..+.+.+.+.+-+| |+.=...+- ...+.+.++++.+|+.+++.|.-++-
T Consensus 40 ~~~Ikvaei~-~~~Dl~~~~~eiy~G-NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi~~ 101 (124)
T COG2450 40 KVYIKVAEIS-SYEDLEEAKREIYAG-NIVIADITPLERDDDLFERVIEELRDTAEEVGGDIAK 101 (124)
T ss_pred eEEEEEEEeC-CHHHHHHHHHHHhcC-CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchhhh
Confidence 3455677774 334677778889999 888777663 27888999999999999988865543
No 450
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=23.43 E-value=2.3e+02 Score=30.46 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=41.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHhCC----------------ceEEEecCCCCHHHHHHHHHHHHHHHHH
Q 012335 12 KIVCTLGPASRSVEMAEKLLRAGM----------------NVARFNFSHGSHAYHQETLDNLRTAMNN 63 (466)
Q Consensus 12 kIi~TiGp~~~~~~~l~~li~~G~----------------~v~RiN~shg~~~~~~~~i~~ir~~~~~ 63 (466)
-|.+++.+..++.+.++...+.|+ |.+|||||+-+.++..+-++.+.++.++
T Consensus 388 flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 388 FLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLRE 455 (459)
T ss_pred EEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 466777777777788888887753 4699999999999988888888877654
No 451
>PRK07591 threonine synthase; Validated
Probab=23.43 E-value=5.6e+02 Score=27.24 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEE
Q 012335 336 ESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSV 379 (466)
Q Consensus 336 ~~ia~~av~~a~~~~a~~Ivv~T~sG~ta~~vSk~--RP~~PIiAv 379 (466)
+..+..++..|.+.+++.|++. .||++++.+|.| +-..|.+.+
T Consensus 122 dRga~~~v~~A~~~g~~~vv~a-SsGN~g~alA~~aa~~Gl~~~I~ 166 (421)
T PRK07591 122 DRVVSVALTAARELGFTTVACA-STGNLANSVAAHAARAGLDSCVF 166 (421)
T ss_pred HHHHHHHHHHHHHcCCCEEEEe-CCCHHHHHHHHHHHHcCCCEEEE
Confidence 3344455556667777766553 667777665554 345666666
No 452
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=23.42 E-value=1.6e+02 Score=28.87 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=47.1
Q ss_pred ccCcCCCcEEEEcCCCC-hhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEE
Q 012335 190 WGVPNKIDMIALSFVRK-GSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMV 251 (466)
Q Consensus 190 ~~~~~~~d~v~~sfV~s-a~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImi 251 (466)
.-.+.|+|+|.+-+ +. ..++..+-+.+++.|....|.-+-.| .++.++.++...|.|+|
T Consensus 77 ~~~~aGad~it~H~-Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T--~~~~l~~~l~~vD~VLv 136 (229)
T PRK09722 77 QLADAGADFITLHP-ETINGQAFRLIDEIRRAGMKVGLVLNPET--PVESIKYYIHLLDKITV 136 (229)
T ss_pred HHHHcCCCEEEECc-cCCcchHHHHHHHHHHcCCCEEEEeCCCC--CHHHHHHHHHhcCEEEE
Confidence 33678999997765 53 34677777888888988889888888 46789999999998887
No 453
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.24 E-value=5.9e+02 Score=24.42 Aligned_cols=153 Identities=11% Similarity=0.072 Sum_probs=84.7
Q ss_pred EEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHc
Q 012335 200 ALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQ 279 (466)
Q Consensus 200 ~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~ 279 (466)
.+=...++++...+-+.|-+.|-+ .|-.-.-++.+++.|.++.+..+.++||-|-- +..+. .+.|.++
T Consensus 8 ~Vir~~~~~~a~~ia~al~~gGi~-~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTV---l~~e~--------a~~ai~a 75 (201)
T PRK06015 8 PVLLIDDVEHAVPLARALAAGGLP-AIEITLRTPAALDAIRAVAAEVEEAIVGAGTI---LNAKQ--------FEDAAKA 75 (201)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCC-EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeC---cCHHH--------HHHHHHc
Confidence 333445777777777777665532 23334468888888888877777788886532 22222 3455566
Q ss_pred CCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhhhhccchhhHHHHHhhCCCCCCcHHHHHHHHHHHHHhcCCcEEEEEcC
Q 012335 280 GKPVVTATQMLESMIKSPRPTRAEATDVANAAENFINYGDLFKKIMETAPVPMSPLESLASSAVRTANCIKAALILVLTR 359 (466)
Q Consensus 280 gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~ 359 (466)
|--.|++-. + ..|+-+.++. ..+.+.|-- .++.|. ..|.+.+|+.+=+|.-
T Consensus 76 GA~FivSP~-~----------~~~vi~~a~~--~~i~~iPG~----------~TptEi------~~A~~~Ga~~vK~FPa 126 (201)
T PRK06015 76 GSRFIVSPG-T----------TQELLAAAND--SDVPLLPGA----------ATPSEV------MALREEGYTVLKFFPA 126 (201)
T ss_pred CCCEEECCC-C----------CHHHHHHHHH--cCCCEeCCC----------CCHHHH------HHHHHCCCCEEEECCc
Confidence 666665321 1 2233333332 112221110 123332 2367889988888874
Q ss_pred --Cc-h-HHHHHHhcCCCCCEEEEEeccccccccccccCChhhhhhhcC
Q 012335 360 --GG-T-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLI 404 (466)
Q Consensus 360 --sG-~-ta~~vSk~RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L 404 (466)
-| - -.+.+..--|..|+++. ..+. -+....+|..
T Consensus 127 ~~~GG~~yikal~~plp~~~l~pt-------GGV~----~~n~~~~l~a 164 (201)
T PRK06015 127 EQAGGAAFLKALSSPLAGTFFCPT-------GGIS----LKNARDYLSL 164 (201)
T ss_pred hhhCCHHHHHHHHhhCCCCcEEec-------CCCC----HHHHHHHHhC
Confidence 22 2 24556667788888876 4333 3456666664
No 454
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.21 E-value=1.7e+02 Score=28.26 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=48.0
Q ss_pred ccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEE
Q 012335 190 WGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMV 251 (466)
Q Consensus 190 ~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImi 251 (466)
.-.+.|+|+|.+- +++..++.++-+.+++.|....+.-+=+| .++.++.++...|.|++
T Consensus 76 ~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlv 134 (220)
T PRK08883 76 DFAKAGASMITFH-VEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILL 134 (220)
T ss_pred HHHHhCCCEEEEc-ccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEE
Confidence 3367999988775 46667787777888888888888888887 57779999999998887
No 455
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=23.05 E-value=1.7e+02 Score=29.08 Aligned_cols=53 Identities=26% Similarity=0.333 Sum_probs=38.4
Q ss_pred ceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEe
Q 012335 224 ILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTA 286 (466)
Q Consensus 224 ~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~A 286 (466)
.++++ +..+-.+|+.+.+|++.|-=|-| -++-...++...+.+++.|||+++-
T Consensus 33 sPiMa-----~~~~E~~e~~~~a~al~iNiGTl-----~~~~~~~m~~A~~~A~~~~~PvVLD 85 (246)
T PF02110_consen 33 SPIMA-----EAPEEVEEFASIADALVINIGTL-----TDERIEAMKKAAKAANELGIPVVLD 85 (246)
T ss_dssp EEEE-------STTTHHHHHHCTSEEEEESTTS-----SHHHHHHHHHHHHHHHHTT--EEEE
T ss_pred Ccccc-----CCHHHHHHHHHHcCEEEEECCCC-----CHhHHHHHHHHHHHHHHcCCCEEEe
Confidence 56776 34566899999999999975533 3466678889999999999999873
No 456
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=23.00 E-value=97 Score=30.23 Aligned_cols=50 Identities=6% Similarity=0.167 Sum_probs=34.0
Q ss_pred ccCcCCCcEEEEcCCCChhh--------HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc
Q 012335 190 WGVPNKIDMIALSFVRKGSD--------LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 190 ~~~~~~~d~v~~sfV~sa~d--------v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~ 245 (466)
.|.+.|++|| .|||..-+| +.++.+.+...+.+.+|++ .+++|.++++++
T Consensus 121 ~Aa~aGa~yv-sPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILa-----AS~r~~~~v~~a 178 (222)
T PRK12656 121 LAIEAGADYL-APYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILA-----ASFKNVAQVNKA 178 (222)
T ss_pred HHHHCCCCEE-ecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEE-----EecCCHHHHHHH
Confidence 4677999876 899988554 3445556666666777776 567777777653
No 457
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=22.87 E-value=1.3e+02 Score=30.80 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=34.0
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeeEee
Q 012335 41 NFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPEIRTG 82 (466)
Q Consensus 41 N~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g 82 (466)
||-.-.+|.+.+.+..+..|+ ++|.|+-.++|++|+--=+|
T Consensus 127 NFGm~~PeGyRKAlRlm~~Ae-kF~lPiitfIDT~GAypG~~ 167 (317)
T COG0825 127 NFGMPRPEGYRKALRLMKLAE-KFGLPIITFIDTPGAYPGIG 167 (317)
T ss_pred cCCCCCchHHHHHHHHHHHHH-HhCCCEEEEecCCCCCCCcc
Confidence 899889999998888877665 59999999999999765443
No 458
>PRK09982 universal stress protein UspD; Provisional
Probab=22.86 E-value=1.9e+02 Score=25.17 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchHHHHHH--h---cCCCCCEEEE
Q 012335 339 ASSAVRTANCIKAALILVLTRGGTTAKMVS--K---YRPSMPILSV 379 (466)
Q Consensus 339 a~~av~~a~~~~a~~Ivv~T~sG~ta~~vS--k---~RP~~PIiAv 379 (466)
+...++.|++.+|+.||+-++.+...++++ . .+-.|||+.+
T Consensus 92 ~~~I~~~A~~~~aDLIVmG~~~~~~~~~~~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIV 137 (142)
T ss_pred HHHHHHHHHHcCCCEEEEeCChhHHHHHHHHHHHHHhcCCCCEEEe
Confidence 344455789999999999875322233332 1 2567999998
No 459
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=22.84 E-value=1.1e+02 Score=29.44 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=25.6
Q ss_pred HHHHHHHhCCceEEEec--------C----CCCHHHHHHHHHHHHHH
Q 012335 26 MAEKLLRAGMNVARFNF--------S----HGSHAYHQETLDNLRTA 60 (466)
Q Consensus 26 ~l~~li~~G~~v~RiN~--------s----hg~~~~~~~~i~~ir~~ 60 (466)
.-+.|.+.|+.+.|+|| . +|..++....++.+|..
T Consensus 52 la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~ 98 (210)
T COG2945 52 LARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQAR 98 (210)
T ss_pred HHHHHHhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhh
Confidence 34568899999999999 2 34566666777777764
No 460
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.84 E-value=2.4e+02 Score=23.38 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=43.2
Q ss_pred HHhcHHHHHh--cCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhhh
Q 012335 235 GVANFDDVLA--NSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAAE 312 (466)
Q Consensus 235 av~nideI~~--~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naaE 312 (466)
...+++++++ -.|.++|+-.+ .....++..|-++||+|++=-++ ..|.+|...+..+++
T Consensus 50 ~~~~~~~ll~~~~~D~V~I~tp~-----------~~h~~~~~~~l~~g~~v~~EKP~--------~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 50 VYTDLEELLADEDVDAVIIATPP-----------SSHAEIAKKALEAGKHVLVEKPL--------ALTLEEAEELVEAAK 110 (120)
T ss_dssp EESSHHHHHHHTTESEEEEESSG-----------GGHHHHHHHHHHTTSEEEEESSS--------SSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhcCCEEEEecCC-----------cchHHHHHHHHHcCCEEEEEcCC--------cCCHHHHHHHHHHHH
Confidence 3446888888 46999997333 34667888999999999974443 357788888777765
Q ss_pred h
Q 012335 313 N 313 (466)
Q Consensus 313 ~ 313 (466)
+
T Consensus 111 ~ 111 (120)
T PF01408_consen 111 E 111 (120)
T ss_dssp H
T ss_pred H
Confidence 4
No 461
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.82 E-value=2.1e+02 Score=29.18 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=44.8
Q ss_pred HHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHH--hcHHHHHhc-CCeeEEeC
Q 012335 186 DILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGV--ANFDDVLAN-SDAFMVAR 253 (466)
Q Consensus 186 di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av--~nideI~~~-sDgImiaR 253 (466)
++ .-+++.|+|.|.+=... +++++++-+.++..+.++ +||---|+ +|+.+.++. .|.|-+|.
T Consensus 211 ea-~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 211 QL-DEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HH-HHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 44 45689999999998755 888888777766555554 45544444 688888888 79998863
No 462
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=22.75 E-value=1.7e+02 Score=28.56 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=29.7
Q ss_pred HHHhcHHHHHhc-CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 234 EGVANFDDVLAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 234 ~av~nideI~~~-sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
...+.++.+.+. .|+|||| |=+|+. .+ --.+.+++++++..|+++
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt--~~----~~~~~v~~ik~~~lPvil 60 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVT--YE----KTDTLIEALRRYGLPIIL 60 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCccc--HH----HHHHHHHHHhccCCCEEE
Confidence 345566777766 7999999 555442 22 234556667778899996
No 463
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=22.75 E-value=2e+02 Score=26.27 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=10.0
Q ss_pred CCchHHHHHHhcCCCC-CEEEE
Q 012335 359 RGGTTAKMVSKYRPSM-PILSV 379 (466)
Q Consensus 359 ~sG~ta~~vSk~RP~~-PIiAv 379 (466)
.+|+|+..++++=|.- ++-.+
T Consensus 26 d~GtT~~~la~~L~~~~~ltVv 47 (161)
T PF00455_consen 26 DSGTTTLELAKYLPDKKNLTVV 47 (161)
T ss_pred ECchHHHHHHHHhhcCCceEEE
Confidence 3455555555544443 44444
No 464
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=22.74 E-value=2.4e+02 Score=28.53 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCC
Q 012335 20 ASRSVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGI 66 (466)
Q Consensus 20 ~~~~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~ 66 (466)
-+.+.|.+++-+++|.+-.=++-||-++|+.-+.-..+.+.+...|.
T Consensus 81 Hg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv 127 (282)
T TIGR01858 81 HHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDC 127 (282)
T ss_pred CCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34578999999999999999999999998877766666666666554
No 465
>PRK01362 putative translaldolase; Provisional
Probab=22.73 E-value=1.2e+02 Score=29.33 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=34.6
Q ss_pred ccCcCCCcEEEEcCCCChhh--------HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc
Q 012335 190 WGVPNKIDMIALSFVRKGSD--------LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 190 ~~~~~~~d~v~~sfV~sa~d--------v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~ 245 (466)
.|.+.|++|| .|||..-+| +.++.+++...+.+.+|++ .+++|.++++++
T Consensus 117 ~Aa~aGa~yi-spyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-----AS~r~~~~v~~~ 174 (214)
T PRK01362 117 LAAKAGATYV-SPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-----ASVRHPMHVLEA 174 (214)
T ss_pred HHHhcCCcEE-EeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-----eecCCHHHHHHH
Confidence 4567899977 789888766 3455666666666677766 566777777653
No 466
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=22.71 E-value=4.7e+02 Score=25.79 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=59.0
Q ss_pred cHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcC-------CCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCc
Q 012335 183 DKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHA-------KNILLMSKVENLEGVANFDDVLANSDAFMVARGD 255 (466)
Q Consensus 183 D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~-------~~~~IiaKIE~~~av~nideI~~~sDgImiaRgD 255 (466)
|.+.+.+.+.+.|++.++..-+ +.++-..+.++..... -++.-+.. -..+.++.+++.+.....-++|=|.
T Consensus 20 ~~~~~l~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~~~v~~~~GiHP~~~~~-~~~~~~~~l~~~l~~~~~~~~aIGE 97 (258)
T PRK11449 20 DEEASLQRAAQAGVGKIIVPAT-EAENFARVLALAERYQPLYAALGLHPGMLEK-HSDVSLDQLQQALERRPAKVVAVGE 97 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEeeC-CHHHHHHHHHHHHhCCCEEEEEeeCcCcccc-CCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 4434436677889988876554 6777777777665432 12222211 1334566666666433212445467
Q ss_pred ccCcCCc-hhHHHHH----HHHHHHHHHcCCCeEEee
Q 012335 256 LGMEIPI-EKIFLAQ----KVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 256 Lg~e~~~-e~v~~~q----k~ii~~~~~~gkPvi~AT 287 (466)
-|.+.-. +.-...| ++.++.|.+.++||++=+
T Consensus 98 iGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~ 134 (258)
T PRK11449 98 IGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHS 134 (258)
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 7776532 1122345 466788899999999754
No 467
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=22.65 E-value=70 Score=33.64 Aligned_cols=62 Identities=13% Similarity=0.227 Sum_probs=39.1
Q ss_pred hccCcCCCcEEEEcC-------------CCChhhHHHH----HHHHHhcC-CCceEEEeecCHHHHhcHHHHHhc----C
Q 012335 189 NWGVPNKIDMIALSF-------------VRKGSDLVEV----RNLLRVHA-KNILLMSKVENLEGVANFDDVLAN----S 246 (466)
Q Consensus 189 ~~~~~~~~d~v~~sf-------------V~sa~dv~~~----r~~l~~~~-~~~~IiaKIE~~~av~nideI~~~----s 246 (466)
..+.+.|+|+|..+. +..+.-+.++ ++++.+.+ +.+.|||- -|+.+-.+|+++ +
T Consensus 203 ~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAd----GGI~tg~di~kAlAlGA 278 (369)
T TIGR01304 203 LHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIAD----GGIETSGDLVKAIACGA 278 (369)
T ss_pred HHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEe----CCCCCHHHHHHHHHcCC
Confidence 334568999997441 2222223333 34666666 46888883 467777777776 7
Q ss_pred CeeEEeCC
Q 012335 247 DAFMVARG 254 (466)
Q Consensus 247 DgImiaRg 254 (466)
|++|+|+.
T Consensus 279 daV~iGt~ 286 (369)
T TIGR01304 279 DAVVLGSP 286 (369)
T ss_pred CEeeeHHH
Confidence 99999853
No 468
>PRK08999 hypothetical protein; Provisional
Probab=22.63 E-value=2.5e+02 Score=28.15 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCc
Q 012335 24 VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGIL 67 (466)
Q Consensus 24 ~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~ 67 (466)
.+.+++++.+|+..+-|-..+.+.++..+.++.+++..++++.+
T Consensus 147 ~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~ 190 (312)
T PRK08999 147 LARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQ 190 (312)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCE
Confidence 36788899999999999999999999999999999998887754
No 469
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=22.63 E-value=3e+02 Score=21.61 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=38.6
Q ss_pred cEEecCCCEEEEEeCCCCCCCccEEee-cchhhhhccCCCCEEEEeCCeEEEEEEEEecCCCeEEEEEeeC
Q 012335 89 PIQLVQGQEITISTDYSLKGDEKMISM-SYKKLAEDLRPGSVILCSDGTISLTVLDCAKELGLVRCRCENS 158 (466)
Q Consensus 89 ~i~l~~G~~v~l~~~~~~~~~~~~i~v-~~~~~~~~v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~~v~~g 158 (466)
...+..|+.++|+....-.......+. +.. .+..+.++.+.+|.+.+.=...+ +.+...|.+.|.
T Consensus 8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~----~~~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~a~N~ 73 (85)
T cd05728 8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQ----PLASENRIEVEAGDLRITKLSLS-DSGMYQCVAENK 73 (85)
T ss_pred ccEEcCCCcEEEEEEeeEeCCCEEEEEECCE----ECCCCCeEEEeCCEEEEeeCCHH-HCEEEEEEEECC
Confidence 467899999999875221112233332 222 24556778888887665533222 355688988864
No 470
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=22.62 E-value=5.2e+02 Score=27.31 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=56.5
Q ss_pred hcHHHHHhccCcCCCcEEEEcCCCC------------hhhHHHHHHHHHhcC--CCceEEEeecCHHHHhcHHHHHhc--
Q 012335 182 KDKEDILNWGVPNKIDMIALSFVRK------------GSDLVEVRNLLRVHA--KNILLMSKVENLEGVANFDDVLAN-- 245 (466)
Q Consensus 182 ~D~~di~~~~~~~~~d~v~~sfV~s------------a~dv~~~r~~l~~~~--~~~~IiaKIE~~~av~nideI~~~-- 245 (466)
.+..+..+...+.|+|+|-+.+-.- .+|-..+.++++..- .+++|++||= + .+.++.+|+++
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~-p-~~~~~~~~a~~~~ 190 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT-P-NITDIREPARAAK 190 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcC-C-CcccHHHHHHHHH
Confidence 4444443444567888877643210 033444444444321 3689999993 3 35567777664
Q ss_pred ---CCeeEE-----eCCc-----------c------cCcCCchhHHHHHHHHHHHHHHc---CCCeEEeehhh
Q 012335 246 ---SDAFMV-----ARGD-----------L------GMEIPIEKIFLAQKVMIHKANIQ---GKPVVTATQML 290 (466)
Q Consensus 246 ---sDgImi-----aRgD-----------L------g~e~~~e~v~~~qk~ii~~~~~~---gkPvi~ATqmL 290 (466)
+|||.+ +|-. | |-=-|....|...+.|-...++. ..|+|-..-+.
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~ 263 (420)
T PRK08318 191 RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE 263 (420)
T ss_pred HCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC
Confidence 588873 2211 1 11112334455566666655554 57888765443
No 471
>PRK08116 hypothetical protein; Validated
Probab=22.62 E-value=2.1e+02 Score=28.48 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=31.8
Q ss_pred HHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehh
Q 012335 241 DVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQM 289 (466)
Q Consensus 241 eI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqm 289 (466)
+-+..+|-++|. |||.+-.-+..-..--.|+..-...|+|+|++|+.
T Consensus 174 ~~l~~~dlLviD--Dlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 174 RSLVNADLLILD--DLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHhcCCCEEEEe--cccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 334457988885 88887554432222335777777789999999964
No 472
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=22.61 E-value=1.3e+02 Score=29.98 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=30.7
Q ss_pred HHhcHHH-HHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 235 GVANFDD-VLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 235 av~nide-I~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
-+..+++ |.+-.|+|+|.+.|- ..-...+++++++|.||+.
T Consensus 80 Q~~~i~~~ia~~~daIiv~~~d~----------~~~~~~v~~a~~aGIpVv~ 121 (322)
T COG1879 80 QIAQIEDLIAQGVDAIIINPVDP----------DALTPAVKKAKAAGIPVVT 121 (322)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCh----------hhhHHHHHHHHHCCCcEEE
Confidence 3334444 445689999998885 3566788999999999995
No 473
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=22.61 E-value=2e+02 Score=27.17 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=38.6
Q ss_pred CeEEEEecCCCCCCH----------HHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceE
Q 012335 10 KTKIVCTLGPASRSV----------EMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCA 69 (466)
Q Consensus 10 ~tkIi~TiGp~~~~~----------~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~ 69 (466)
++.+|+-+-++|-+. ++.+.+.++|.+..|++.-.+......+.++.+|+. .+.|+.
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~---v~iPi~ 76 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA---VSLPVL 76 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh---cCCCEE
Confidence 588999997766553 677889999999999995544444433455555553 345544
No 474
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=22.60 E-value=2.3e+02 Score=29.69 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=41.6
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcC------C--------CCh---hhHHHHHHHHHhcCCCceEEE--eecCHHHHhc
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSF------V--------RKG---SDLVEVRNLLRVHAKNILLMS--KVENLEGVAN 238 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sf------V--------~sa---~dv~~~r~~l~~~~~~~~Iia--KIE~~~av~n 238 (466)
-++..|...+.+...+.|+|+|.+|- . ..+ ..+..+|+.+ ++++++ .|-+ .+.
T Consensus 248 g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~~G~i~~---~~~ 319 (382)
T cd02931 248 GRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-----DVPVIMAGRMED---PEL 319 (382)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC-----CCCEEEeCCCCC---HHH
Confidence 45656654443555678999999872 1 001 1223334432 244443 4433 345
Q ss_pred HHHHHhc--CCeeEEeCCccc
Q 012335 239 FDDVLAN--SDAFMVARGDLG 257 (466)
Q Consensus 239 ideI~~~--sDgImiaRgDLg 257 (466)
.+++++. +|.|++||+=|+
T Consensus 320 ~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 320 ASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred HHHHHHcCCCCeeeechHhHh
Confidence 6777774 799999998664
No 475
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=22.60 E-value=94 Score=30.28 Aligned_cols=49 Identities=14% Similarity=0.279 Sum_probs=30.6
Q ss_pred ccCcCCCcEEEEcCCCChhh--------HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHh
Q 012335 190 WGVPNKIDMIALSFVRKGSD--------LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLA 244 (466)
Q Consensus 190 ~~~~~~~d~v~~sfV~sa~d--------v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~ 244 (466)
.|...|++|| .|||...+| +.++.++++..+.+.+|++ .+++|.+++++
T Consensus 119 ~Aa~aGa~yI-spyvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILa-----AS~r~~~~v~~ 175 (220)
T PRK12655 119 LAALAGAKYV-APYVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLA-----ASFKTPRQALD 175 (220)
T ss_pred HHHHcCCeEE-EeecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEE-----EecCCHHHHHH
Confidence 3566899866 789988876 5555556655555566555 34555544443
No 476
>PRK06836 aspartate aminotransferase; Provisional
Probab=22.47 E-value=2.1e+02 Score=29.68 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHhCC-----------ceEEEecCCCCHHHHHHHHHHHHHHHHHc
Q 012335 22 RSVEMAEKLLRAGM-----------NVARFNFSHGSHAYHQETLDNLRTAMNNT 64 (466)
Q Consensus 22 ~~~~~l~~li~~G~-----------~v~RiN~shg~~~~~~~~i~~ir~~~~~~ 64 (466)
+..+..+.|.+.|+ +.+||+|++ +.+...+.++.|+++.++|
T Consensus 340 ~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~~-~~~~~~~~i~~l~~~l~~~ 392 (394)
T PRK06836 340 DDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYCV-DTETIERSLPAFEKLAKEY 392 (394)
T ss_pred CHHHHHHHHHhCCEEEECchhcCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 34555566777775 679999995 7788888999999887655
No 477
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=22.46 E-value=1.7e+02 Score=29.39 Aligned_cols=62 Identities=24% Similarity=0.283 Sum_probs=46.1
Q ss_pred HHHhcHHHHHhc--CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHhh
Q 012335 234 EGVANFDDVLAN--SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANAA 311 (466)
Q Consensus 234 ~av~nideI~~~--sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~naa 311 (466)
....+++++++. .|.|+|+ .|. ..-..++.+|-++||+|++= +=..+|-+|+..+..+|
T Consensus 54 ~~~~~~~~ll~~~~iD~V~Ia-------tp~----~~H~e~~~~AL~aGkhVl~E--------KPla~t~~ea~~l~~~a 114 (342)
T COG0673 54 KAYTDLEELLADPDIDAVYIA-------TPN----ALHAELALAALEAGKHVLCE--------KPLALTLEEAEELVELA 114 (342)
T ss_pred cccCCHHHHhcCCCCCEEEEc-------CCC----hhhHHHHHHHHhcCCEEEEc--------CCCCCCHHHHHHHHHHH
Confidence 567789999987 4899997 332 23356668999999999962 22257889999898887
Q ss_pred hhh
Q 012335 312 ENF 314 (466)
Q Consensus 312 E~~ 314 (466)
+++
T Consensus 115 ~~~ 117 (342)
T COG0673 115 RKA 117 (342)
T ss_pred HHc
Confidence 765
No 478
>PLN02321 2-isopropylmalate synthase
Probab=22.40 E-value=1.2e+03 Score=26.56 Aligned_cols=126 Identities=16% Similarity=0.194 Sum_probs=73.4
Q ss_pred CChhcHHHHHhccCcCCCcEEEEcC-CCChhhHHHHHHHHHhcCCCc---eEEEeec-----CHHHHhcHHHHHhcCC--
Q 012335 179 LTEKDKEDILNWGVPNKIDMIALSF-VRKGSDLVEVRNLLRVHAKNI---LLMSKVE-----NLEGVANFDDVLANSD-- 247 (466)
Q Consensus 179 lte~D~~di~~~~~~~~~d~v~~sf-V~sa~dv~~~r~~l~~~~~~~---~IiaKIE-----~~~av~nideI~~~sD-- 247 (466)
+|..++..|.+...+.|+|.|=+.| .-|+.|.+.++.+.......+ ..+++|- +.++++..-+=+.-++
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~ 184 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRP 184 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCC
Confidence 5777777776777889999999887 688888888887765421111 1223332 3334332222111121
Q ss_pred --eeEEeCCcccC----cCCchhHHHHHHHHHHHHHHcCCC-eEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 248 --AFMVARGDLGM----EIPIEKIFLAQKVMIHKANIQGKP-VVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 248 --gImiaRgDLg~----e~~~e~v~~~qk~ii~~~~~~gkP-vi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
.++++-.|+-. ....+++...-+++++.|+.+|.. |.+..+ ...+-.+..+-.++.+
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E------Da~rtd~d~l~~~~~~ 248 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE------DAGRSDPEFLYRILGE 248 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc------cCCCCCHHHHHHHHHH
Confidence 34444444422 234578888889999999999985 544322 2233445555555555
No 479
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=22.39 E-value=1.1e+02 Score=31.94 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=31.4
Q ss_pred HHHHhc-CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhh
Q 012335 240 DDVLAN-SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESM 293 (466)
Q Consensus 240 deI~~~-sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM 293 (466)
+.+++. ++||++.- +|.-.+|...-..++.|.+.|+||+++||-..-.
T Consensus 256 ~~~~~~g~~GlVl~g------~G~Gn~p~~~~~al~~a~~~GipVV~~Sr~~~G~ 304 (349)
T TIGR00520 256 NAVLDAGAKGIVLAG------VGNGSLSAAGLKVNETAAKLGVPIVRSSRVPDGM 304 (349)
T ss_pred HHHHhCCCCEEEEEe------ECCCCCCHHHHHHHHHHHHCCCEEEEEccCCCCc
Confidence 444444 68999872 2222333345556777889999999999976543
No 480
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=22.34 E-value=2.6e+02 Score=30.24 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=39.5
Q ss_pred CHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCc
Q 012335 23 SVEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGIL 67 (466)
Q Consensus 23 ~~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~ 67 (466)
+.+.+++++++|++.+-|..-+.+.++..+.+..+++..++++.+
T Consensus 219 ~~~~ve~aL~aGv~~VQLReK~ls~~el~~la~~l~~l~~~~gv~ 263 (437)
T PRK12290 219 DVEWIERLLPLGINTVQLRIKDPQQADLEQQIIRAIALGREYNAQ 263 (437)
T ss_pred CHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCE
Confidence 457899999999999999999999999989999999888877643
No 481
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.34 E-value=4.3e+02 Score=26.69 Aligned_cols=102 Identities=15% Similarity=0.247 Sum_probs=52.1
Q ss_pred EEEcCCCChhhHHHHHHHHHhcCCCceEE---EeecCHHHH----hcHHHHHh-----cCCeeEEeCCcccCcCCchhHH
Q 012335 199 IALSFVRKGSDLVEVRNLLRVHAKNILLM---SKVENLEGV----ANFDDVLA-----NSDAFMVARGDLGMEIPIEKIF 266 (466)
Q Consensus 199 v~~sfV~sa~dv~~~r~~l~~~~~~~~Ii---aKIE~~~av----~nideI~~-----~sDgImiaRgDLg~e~~~e~v~ 266 (466)
|++=--.+++-+..+...+...+....+. +...-..|. +.|..+-+ ..|.|+|+||-=+. |++.
T Consensus 17 I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~----eDL~ 92 (319)
T PF02601_consen 17 IAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI----EDLW 92 (319)
T ss_pred EEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh----HHhc
Confidence 33333466777777777776655433322 222111111 12222221 25999999985322 2332
Q ss_pred H-HHHHHHHHHHHcCCCeEEee------hhhHhhhcCCCCCHHHH
Q 012335 267 L-AQKVMIHKANIQGKPVVTAT------QMLESMIKSPRPTRAEA 304 (466)
Q Consensus 267 ~-~qk~ii~~~~~~gkPvi~AT------qmLeSM~~~p~PTRAEv 304 (466)
. -...++++..+...|||.|= =+.|---.--.||...+
T Consensus 93 ~FN~e~varai~~~~~PvisaIGHe~D~ti~D~vAd~ra~TPtaa 137 (319)
T PF02601_consen 93 AFNDEEVARAIAASPIPVISAIGHETDFTIADFVADLRAPTPTAA 137 (319)
T ss_pred ccChHHHHHHHHhCCCCEEEecCCCCCchHHHHHHHhhCCCHHHH
Confidence 2 23456666677889999873 24444434444444433
No 482
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=22.33 E-value=6.4e+02 Score=24.83 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=31.5
Q ss_pred hcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEee
Q 012335 237 ANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTAT 287 (466)
Q Consensus 237 ~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~AT 287 (466)
+.+.++++.+|.+.++-..++ .++. ....++++.|+++|+|+++-+
T Consensus 135 ~~~~~~l~~~~~v~~~~~~~~-~~~~----~~~~~~~~~a~~~g~~v~~D~ 180 (315)
T TIGR02198 135 AAIREQLASADAVVLSDYAKG-VLTP----RVVQEVIAAARKHGKPVLVDP 180 (315)
T ss_pred HHHHhhhhhCCEEEEecCCCC-ccCH----HHHHHHHHHHHhcCCCEEEeC
Confidence 344556777899999732222 2232 467788999999999998765
No 483
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=22.20 E-value=2.7e+02 Score=28.15 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=38.0
Q ss_pred HHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEE
Q 012335 233 LEGVANFDDVLANSDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVT 285 (466)
Q Consensus 233 ~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ 285 (466)
..+++-++..+.--+++.||+| ||- -+.+....+.|++.|+..++|+.+
T Consensus 89 ~~av~~i~k~L~RlhavVIGPG-LGR---dp~~~k~i~~iley~~~~dvP~VI 137 (306)
T KOG3974|consen 89 ENAVDIIEKLLQRLHAVVIGPG-LGR---DPAILKEIAKILEYLRGKDVPLVI 137 (306)
T ss_pred CchHhHHHHHHhheeEEEECCC-CCC---CHHHHHHHHHHHHHHhcCCCcEEE
Confidence 4477778888888999999977 554 244556667899999999999654
No 484
>PLN02591 tryptophan synthase
Probab=22.17 E-value=3.8e+02 Score=26.54 Aligned_cols=65 Identities=22% Similarity=0.451 Sum_probs=41.4
Q ss_pred HHHHhcHHHHHhc--CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHhhhcCCCCCHHHHHhHHHh
Q 012335 233 LEGVANFDDVLAN--SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLESMIKSPRPTRAEATDVANA 310 (466)
Q Consensus 233 ~~av~nideI~~~--sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeSM~~~p~PTRAEvsDv~na 310 (466)
+-|++++-+-++. .||++|. ++|+|+ ...+..+|+++|...|.-- +|..+...+.-++..
T Consensus 92 ~~G~~~F~~~~~~aGv~Gviip------DLP~ee----~~~~~~~~~~~gl~~I~lv--------~Ptt~~~ri~~ia~~ 153 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVP------DLPLEE----TEALRAEAAKNGIELVLLT--------TPTTPTERMKAIAEA 153 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeC------CCCHHH----HHHHHHHHHHcCCeEEEEe--------CCCCCHHHHHHHHHh
Confidence 3488888666666 4999996 556644 5578889999998766421 133333335556666
Q ss_pred hhhhc
Q 012335 311 AENFI 315 (466)
Q Consensus 311 aE~~~ 315 (466)
+...+
T Consensus 154 ~~gFI 158 (250)
T PLN02591 154 SEGFV 158 (250)
T ss_pred CCCcE
Confidence 54444
No 485
>TIGR00202 csrA carbon storage regulator (csrA). Modulates the expression of genes in the glycogen biosynthesis and gluconeogenesis pathways by accelerating the 5'-to-3' degradation of these transcripts through selective RNA binding. The N-terminal end of the sequence (AA 11-45) contains the KH motif which is characteristic of a set of RNA-binding proteins.
Probab=22.14 E-value=1.7e+02 Score=23.39 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=21.1
Q ss_pred cCCCCEEEEeCCeEEEEEEEEecCCCeEEE
Q 012335 124 LRPGSVILCSDGTISLTVLDCAKELGLVRC 153 (466)
Q Consensus 124 v~~Gd~i~iddG~i~l~V~~v~~~~~~i~~ 153 (466)
-++|..|.|+| .|..+|.++. ++.+.-
T Consensus 6 Rk~gE~I~Igd-~I~I~Vl~i~--g~~Vrl 32 (69)
T TIGR00202 6 RKVNESIQIGD-DIEVKVLSVK--GDQVKL 32 (69)
T ss_pred ccCCCEEEeCC-CEEEEEEEEc--CCeEEE
Confidence 47899999998 5999998884 556643
No 486
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.00 E-value=1.3e+02 Score=26.92 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=25.6
Q ss_pred hccCcCCCcEEEEcCCCCh--hhHHHHHHHHHhcC
Q 012335 189 NWGVPNKIDMIALSFVRKG--SDLVEVRNLLRVHA 221 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~sa--~dv~~~r~~l~~~~ 221 (466)
+.+.+.++|.|++|...+. +.+.++.+.|++.|
T Consensus 46 ~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~g 80 (134)
T TIGR01501 46 KAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAG 80 (134)
T ss_pred HHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCC
Confidence 5668899999999996554 44888888887766
No 487
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=21.89 E-value=4.7e+02 Score=26.59 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCe
Q 012335 24 VEMAEKLLRAGMNVARFNFSHGSHAYHQETLDNLRTAMNNTGILCAVMLDTKGPE 78 (466)
Q Consensus 24 ~~~l~~li~~G~~v~RiN~shg~~~~~~~~i~~ir~~~~~~~~~i~i~~Dl~Gpk 78 (466)
+|.+|+||+.=-.|.-+-|-..|.-+ ++.-+-+|+.+-+.||-|++|-.+-+
T Consensus 136 KE~vR~~I~~A~kVIAIVMD~FTD~d---If~DLleAa~kR~VpVYiLLD~~~~~ 187 (284)
T PF07894_consen 136 KEVVRRMIQQAQKVIAIVMDVFTDVD---IFCDLLEAANKRGVPVYILLDEQNLP 187 (284)
T ss_pred HHHHHHHHHHhcceeEEEeeccccHH---HHHHHHHHHHhcCCcEEEEechhcCh
Confidence 78999999998888888888877554 77778888877889999999988754
No 488
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.88 E-value=1.6e+02 Score=26.26 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=28.1
Q ss_pred hccCcCCCcEEEEcCC--CChhhHHHHHHHHHhcCC-CceEE
Q 012335 189 NWGVPNKIDMIALSFV--RKGSDLVEVRNLLRVHAK-NILLM 227 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV--~sa~dv~~~r~~l~~~~~-~~~Ii 227 (466)
+.+.+.++|.|++|-. .+...+.++.+.|++.|- +++|+
T Consensus 44 ~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vi 85 (128)
T cd02072 44 DAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY 85 (128)
T ss_pred HHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEE
Confidence 5567889999999984 455677888888877662 45444
No 489
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=21.87 E-value=2e+02 Score=29.54 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=35.5
Q ss_pred cCCCceEEEeecCHHHHhcHHHHHhcCCeeEEeCCcccCcCCchhHH
Q 012335 220 HAKNILLMSKVENLEGVANFDDVLANSDAFMVARGDLGMEIPIEKIF 266 (466)
Q Consensus 220 ~~~~~~IiaKIE~~~av~nideI~~~sDgImiaRgDLg~e~~~e~v~ 266 (466)
.|........|.+++--+-.-++...+|.+++---|.-+ +|+|++-
T Consensus 93 ~G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlI 138 (376)
T COG1465 93 RGHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLI 138 (376)
T ss_pred cCcceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHH
Confidence 455667889999988888888888888988877667654 8888654
No 490
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=21.84 E-value=1.3e+02 Score=30.39 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHH--hcHHHHHhc-CCeeEEe
Q 012335 184 KEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGV--ANFDDVLAN-SDAFMVA 252 (466)
Q Consensus 184 ~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av--~nideI~~~-sDgImia 252 (466)
.++. +-+++.|+|.|.+=. -+++++.++-+.+...+.++ ++|-.-|+ +|+.++++. .|.|.++
T Consensus 198 leea-~ea~~~GaDiI~lDn-~~~e~l~~~v~~l~~~~~~~----~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 198 IEQA-LTVLQASPDILQLDK-FTPQQLHHLHERLKFFDHIP----TLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred HHHH-HHHHHcCcCEEEECC-CCHHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 3344 445799999999986 78889988888886544443 34444454 577777776 6888876
No 491
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=21.83 E-value=2.9e+02 Score=26.69 Aligned_cols=64 Identities=9% Similarity=-0.012 Sum_probs=41.8
Q ss_pred hccCcCCCcEEEEcCCCC-------hhhHHHHHHHHHhcCCCceEEEe--ecCHHHHhcHHHHHhc-CCeeEEeCCcccC
Q 012335 189 NWGVPNKIDMIALSFVRK-------GSDLVEVRNLLRVHAKNILLMSK--VENLEGVANFDDVLAN-SDAFMVARGDLGM 258 (466)
Q Consensus 189 ~~~~~~~~d~v~~sfV~s-------a~dv~~~r~~l~~~~~~~~IiaK--IE~~~av~nideI~~~-sDgImiaRgDLg~ 258 (466)
.-+.+.|+|||+++-|.+ +..+..++.+... .+++++|- | ..+|+.+++++ +|||-+-++=+..
T Consensus 125 ~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~--~~iPvvAIGGI----~~~n~~~~~~~GA~giAvisai~~~ 198 (221)
T PRK06512 125 MEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEM--IEIPCIVQAGS----DLASAVEVAETGAEFVALERAVFDA 198 (221)
T ss_pred HHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHh--CCCCEEEEeCC----CHHHHHHHHHhCCCEEEEhHHhhCC
Confidence 345689999999997752 1234455554433 34666663 4 45788888887 7999887665543
No 492
>PRK12346 transaldolase A; Provisional
Probab=21.82 E-value=1.2e+02 Score=31.36 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=32.0
Q ss_pred ccCcCCCcEEEEcCCCChhh---------------------HHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc
Q 012335 190 WGVPNKIDMIALSFVRKGSD---------------------LVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN 245 (466)
Q Consensus 190 ~~~~~~~d~v~~sfV~sa~d---------------------v~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~ 245 (466)
.+.+.|+++| .|||..-+| |.++.++....|.+.+|++ .+++|.++|+..
T Consensus 165 ~aa~AGa~~I-SPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~Vm~-----ASfRn~~qi~al 235 (316)
T PRK12346 165 ACAEAGVFLI-SPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETIVMG-----ASFRRTEQILAL 235 (316)
T ss_pred HHHHcCCCEE-EecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcEEEe-----cccCCHHHHHHH
Confidence 3567899876 799988877 4444455555555566655 466666666643
No 493
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=21.78 E-value=1.3e+02 Score=28.76 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred ChhcHHHHHhccCcCCCcEEEEcCCC-----ChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhc-----CCee
Q 012335 180 TEKDKEDILNWGVPNKIDMIALSFVR-----KGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLAN-----SDAF 249 (466)
Q Consensus 180 te~D~~di~~~~~~~~~d~v~~sfV~-----sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~-----sDgI 249 (466)
+..+..++.+...+.|++.|.+--+. +.-|...++++....+ +++|+ --|+.+.+++.+. +||+
T Consensus 144 ~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~--ipvia----~GGi~~~~di~~~~~~g~~~gv 217 (233)
T PRK00748 144 SGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVP--IPVIA----SGGVSSLDDIKALKGLGAVEGV 217 (233)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCC--CCEEE----eCCCCCHHHHHHHHHcCCccEE
Q ss_pred EEeCCcccCcCCchhH
Q 012335 250 MVARGDLGMEIPIEKI 265 (466)
Q Consensus 250 miaRgDLg~e~~~e~v 265 (466)
|+||+=+--.+++++.
T Consensus 218 ~vg~a~~~~~~~~~~~ 233 (233)
T PRK00748 218 IVGRALYEGKFDLAEA 233 (233)
T ss_pred EEEHHHHcCCcCcccC
No 494
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=21.76 E-value=6.1e+02 Score=24.33 Aligned_cols=56 Identities=11% Similarity=-0.022 Sum_probs=33.1
Q ss_pred HHHhcCCcEEEEEcCC---ch-HHHHHHhcCCCCCEEEEEeccccccccccccCChhhhhhhcCccCcEEEEc
Q 012335 345 TANCIKAALILVLTRG---GT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPARHSLIFRALVPVLS 413 (466)
Q Consensus 345 ~a~~~~a~~Ivv~T~s---G~-ta~~vSk~RP~~PIiAv~~~~~~tt~~~w~~~~~~~aR~l~L~~GV~P~l~ 413 (466)
.|.+.+|+.+=+|.-+ |- ..+.+..--|..|+++. ..+. -+.+..+|.. |...+-.
T Consensus 116 ~A~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~pt-------GGV~----~~N~~~~l~a--Ga~~vg~ 175 (204)
T TIGR01182 116 LALELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPT-------GGIN----LANVRDYLAA--PNVACGG 175 (204)
T ss_pred HHHHCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEec-------CCCC----HHHHHHHHhC--CCEEEEE
Confidence 3677888888888754 22 23556666677887776 4333 3455555543 5555433
No 495
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=21.74 E-value=3.3e+02 Score=30.11 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=78.9
Q ss_pred CCChhcHHHHHhccCcCCCcEEEEcC-CCChhhHHHHHHHHHhcCCCceEEEee-cCHHHH-----hcHHHHHhc-CCee
Q 012335 178 TLTEKDKEDILNWGVPNKIDMIALSF-VRKGSDLVEVRNLLRVHAKNILLMSKV-ENLEGV-----ANFDDVLAN-SDAF 249 (466)
Q Consensus 178 ~lte~D~~di~~~~~~~~~d~v~~sf-V~sa~dv~~~r~~l~~~~~~~~IiaKI-E~~~av-----~nideI~~~-sDgI 249 (466)
.+|..++..|.+...+.|+|+|=+.| .-|+.|...++.+....-++..|.+-. -....+ ..++..+.+ .+.|
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v 98 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVV 98 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEE
Confidence 36777777776777789999998865 457889999988765322356676655 222222 124444443 3444
Q ss_pred EE--eCCcccCc----CCchhHHHHHHHHHHHHHHcCCCeE-EeehhhHhhhcCCCCCHHHHHhHHHhh
Q 012335 250 MV--ARGDLGME----IPIEKIFLAQKVMIHKANIQGKPVV-TATQMLESMIKSPRPTRAEATDVANAA 311 (466)
Q Consensus 250 mi--aRgDLg~e----~~~e~v~~~qk~ii~~~~~~gkPvi-~ATqmLeSM~~~p~PTRAEvsDv~naa 311 (466)
.+ +--|+-.+ ...+++...-...++.++.+|..|. .+++..+.. +-....+.+++.++
T Consensus 99 ~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~~~~~a 163 (526)
T TIGR00977 99 TIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALATLATA 163 (526)
T ss_pred EEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHHHHHHH
Confidence 33 22233221 2346777777889999999999874 455554321 23455566666663
No 496
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=21.67 E-value=2.2e+02 Score=27.94 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=46.4
Q ss_pred cCcCCCcEEEEcCCCChhhHHHHHHHHHhcCC--CceEEEeecCHHHHhcHHHHHhcCCeeEE
Q 012335 191 GVPNKIDMIALSFVRKGSDLVEVRNLLRVHAK--NILLMSKVENLEGVANFDDVLANSDAFMV 251 (466)
Q Consensus 191 ~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~--~~~IiaKIE~~~av~nideI~~~sDgImi 251 (466)
-.+.|+|+|.+-+ ++..++.+.-+.+++.|. ...|.-+=+| .++.++.++...|.|+|
T Consensus 87 ~~~aGad~It~H~-Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLi 146 (228)
T PRK08091 87 CVAAGADIVTLQV-EQTHDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQI 146 (228)
T ss_pred HHHhCCCEEEEcc-cCcccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEE
Confidence 3678999997765 655677777788888887 7777777777 57889999999998887
No 497
>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase. This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine.
Probab=21.61 E-value=3e+02 Score=28.73 Aligned_cols=57 Identities=9% Similarity=0.128 Sum_probs=35.0
Q ss_pred EeecchhhhhccCCCCEEEEeC---------------CeEEEEEEEEecCCCeEEEEEeeCeEecCCCccccC
Q 012335 113 ISMSYKKLAEDLRPGSVILCSD---------------GTISLTVLDCAKELGLVRCRCENSAVLGERKNVNLP 170 (466)
Q Consensus 113 i~v~~~~~~~~v~~Gd~i~idd---------------G~i~l~V~~v~~~~~~i~~~v~~gG~l~~~Kgvnlp 170 (466)
-.-.+.+|++.+++||.+.++| |++++-+.+.. +.+...|.+..++.++.+.-+.++
T Consensus 38 ~h~~F~dl~~~l~~gDlLV~NdTkVipARL~g~k~tG~~vEvlll~~l-~~~~w~~lv~~~k~~~~G~~l~~~ 109 (344)
T TIGR00113 38 THKTFVDVLDFFNEGDLLVLNNTKVIPARLFGRKESGGKVEVLLLRML-DENRWLALIKPSKKPKIGAKVKFG 109 (344)
T ss_pred EeeehhhhHhhcCCCCEEEEeCcEEeeeeEEEEcCCCCEEEEEEEEEc-CCCeEEEEeecCCCCCCCCEEEEC
Confidence 3456778888888999888875 55555554432 223455666666556555555554
No 498
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=21.25 E-value=1.2e+02 Score=30.99 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.5
Q ss_pred CCeeEEeCCcccCcCCchhHHHHHHHHHHHHHHcCCCeEEeehhhHh
Q 012335 246 SDAFMVARGDLGMEIPIEKIFLAQKVMIHKANIQGKPVVTATQMLES 292 (466)
Q Consensus 246 sDgImiaRgDLg~e~~~e~v~~~qk~ii~~~~~~gkPvi~ATqmLeS 292 (466)
.+||++.---.| .+|...-..++.+.+.|+||+++||-..-
T Consensus 236 ~~GlVl~~~G~G------n~p~~~~~~l~~a~~~gipVV~~sq~~~G 276 (323)
T smart00870 236 AKGLVLEGTGAG------NVPPDLLEALKEALERGIPVVRTSRCLNG 276 (323)
T ss_pred CCEEEEEeeCCC------CCCHHHHHHHHHHHHCCCEEEEeccCCCc
Confidence 689998732222 33334667777888999999999997754
No 499
>PRK08005 epimerase; Validated
Probab=21.20 E-value=2.1e+02 Score=27.65 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=47.6
Q ss_pred ccCcCCCcEEEEcCCCChhhHHHHHHHHHhcCCCceEEEeecCHHHHhcHHHHHhcCCeeEE
Q 012335 190 WGVPNKIDMIALSFVRKGSDLVEVRNLLRVHAKNILLMSKVENLEGVANFDDVLANSDAFMV 251 (466)
Q Consensus 190 ~~~~~~~d~v~~sfV~sa~dv~~~r~~l~~~~~~~~IiaKIE~~~av~nideI~~~sDgImi 251 (466)
.-.+.|+|+|.+-+ ++..++.++-+.+++.|.+..|.-+-+| .++.++.++...|.|+|
T Consensus 76 ~~~~~gad~It~H~-Ea~~~~~~~l~~Ik~~G~k~GlAlnP~T--p~~~i~~~l~~vD~Vlv 134 (210)
T PRK08005 76 WLAAIRPGWIFIHA-ESVQNPSEILADIRAIGAKAGLALNPAT--PLLPYRYLALQLDALMI 134 (210)
T ss_pred HHHHhCCCEEEEcc-cCccCHHHHHHHHHHcCCcEEEEECCCC--CHHHHHHHHHhcCEEEE
Confidence 33679999987764 6556777777888888988888888887 56778899999998887
No 500
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.20 E-value=3.4e+02 Score=27.97 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=21.8
Q ss_pred CCCCChhcHHHHHhccCcCCCcEEEEcCCCChhhHHHHHHHH
Q 012335 176 LPTLTEKDKEDILNWGVPNKIDMIALSFVRKGSDLVEVRNLL 217 (466)
Q Consensus 176 lp~lte~D~~di~~~~~~~~~d~v~~sfV~sa~dv~~~r~~l 217 (466)
.+..++++.+.+.+...+.|++... -. +...||...-..|
T Consensus 295 ~~~ps~e~l~~f~~~l~~~gi~vtv-r~-~~g~di~aaCGqL 334 (343)
T PRK14469 295 LEKPSRERIERFKEILLKNGIEAEI-RR-EKGSDIEAACGQL 334 (343)
T ss_pred CCCCCHHHHHHHHHHHHHCCCeEEE-eC-CCCcchhhcCccc
Confidence 3445666666664455566776543 22 4566666554333
Done!