BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012337
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 136/270 (50%), Gaps = 50/270 (18%)
Query: 147 ESVTVS-NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIP 205
+S+ VS GPD + ++ + ++EL+L P + +I ++ PTPIQK IP
Sbjct: 5 DSIPVSVTGPDYSATNVI---------ENFDELKLDPTIRNNILLASYQRPTPIQKNAIP 55
Query: 206 AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 265
A +DI+ A+TGSGKT AF +PI+ L+ + ++Y+ + +
Sbjct: 56 AILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQ-----------DLNQQRYSKTAYPKC 103
Query: 266 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 325
LI+ PTRELA+Q+ ++ + +R + GG T Q R ++ L+V TPGRL +
Sbjct: 104 LILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVD 163
Query: 326 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCV 385
+ EK+ + L + VLDEADRM++ G +++ II+ M +G N
Sbjct: 164 FI---EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGIN----------- 209
Query: 386 TVSSLQRKKRQTLVFSATIA-----LSADF 410
RQTL+FSAT L+ADF
Sbjct: 210 ---------RQTLMFSATFPKEIQKLAADF 230
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 134/268 (50%), Gaps = 54/268 (20%)
Query: 153 NGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGK 212
+ P +A + +V E E T + +L + +L ++ +LG+ +PT IQ IP A QG+
Sbjct: 27 DSPTEASQPIVEEEETKT----FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGR 81
Query: 213 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272
DIIG AETGSGKT AF LPI+ LLE ++ L AL++TPTR
Sbjct: 82 DIIGLAETGSGKTGAFALPILNALLETPQR--------------------LFALVLTPTR 121
Query: 273 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 332
ELA Q+++ + + I V+ IVGG+ + Q L +P +++ TPGRL + + +
Sbjct: 122 ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKG 181
Query: 333 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 392
L L + V+DEADR++ E+ I+ ++P
Sbjct: 182 F--NLRALKYLVMDEADRILNMDFETEVDKILKVIP------------------------ 215
Query: 393 KKRQTLVFSATIALSADFRKKLKHGSLK 420
+ R+T +FSAT+ +KL+ +LK
Sbjct: 216 RDRKTFLFSATMTKKV---QKLQRAALK 240
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 118/230 (51%), Gaps = 47/230 (20%)
Query: 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 234
+ + L P ++++++ G PTPIQ A +P A +GKD+IG A TG+GKTLAF LPI +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAE 61
Query: 235 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 294
RL +E+ K RAL++TPTRELALQV L VA +++VV
Sbjct: 62 RLAPSQERGRKP-----------------RALVLTPTRELALQVASELTAVAP--HLKVV 102
Query: 295 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354
+ GG KQ+ L + VV TPGR + + G +++L + VLDEAD M+
Sbjct: 103 AVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---VLDLSRVEVAVLDEADEMLSM 159
Query: 355 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 404
G E+++++ P RQTL+FSAT+
Sbjct: 160 GFEEEVEALLSATP------------------------PSRQTLLFSATL 185
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 47/230 (20%)
Query: 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 234
+ + L P ++++++ G PTPI+ A +P A +GKD+IG A TG+GKTLAF LPI +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAE 61
Query: 235 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 294
RL +E+ K RAL++TPTRELALQV L VA +++VV
Sbjct: 62 RLAPSQERGRKP-----------------RALVLTPTRELALQVASELTAVAP--HLKVV 102
Query: 295 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354
+ GG KQ+ L + VV TPGR + + G +++L + VLDEAD M+
Sbjct: 103 AVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG---VLDLSRVEVAVLDEADEMLSM 159
Query: 355 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 404
G E+++++ P RQTL+FSAT+
Sbjct: 160 GFEEEVEALLSATP------------------------PSRQTLLFSATL 185
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 143/296 (48%), Gaps = 61/296 (20%)
Query: 163 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 222
V+ +++ + L +++ ++ + G+K PTPIQK IP + G+D++ A+TGS
Sbjct: 46 VTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGRDLMACAQTGS 104
Query: 223 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 282
GKT AF LPI+ +LLE+ + LE G + +I++PTRELA+Q+ +
Sbjct: 105 GKTAAFLLPILSKLLEDPHE----LE-----------LGRPQVVIVSPTRELAIQIFNEA 149
Query: 283 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 342
++ A +++ + GG S Q + +V+ TPGRL + + ++ + F
Sbjct: 150 RKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFV---DRTFITFEDTRF 206
Query: 343 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 402
VLDEADRM++ G +++ I+ + M R + QTL+FSA
Sbjct: 207 VVLDEADRMLDMGFSEDMRRIMTHVTM----------------------RPEHQTLMFSA 244
Query: 403 TIA-----LSADFRKKLKHGSL--------KLKQSVNGLNS-------IETLSERA 438
T ++ +F K ++ +KQ++ +N IE LSE+A
Sbjct: 245 TFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQA 300
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 105/196 (53%), Gaps = 25/196 (12%)
Query: 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 229
E+ +NEL L ++ +I GF++PT IQ IP + +I+ A TGSGKT +F
Sbjct: 3 VEYXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFA 62
Query: 230 LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 289
+P+++ + E + A+I+TPTRELA+QV D ++ +
Sbjct: 63 IPLIELVNEN---------------------NGIEAIILTPTRELAIQVADEIESLKGNK 101
Query: 290 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 349
N+++ I GG + Q + LK +VVGTPGR+ + ++ G + L + +F+LDEAD
Sbjct: 102 NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT---LNLKNVKYFILDEAD 157
Query: 350 RMIENGHFRELQSIID 365
+ G ++++ I++
Sbjct: 158 EXLNXGFIKDVEKILN 173
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 115/199 (57%), Gaps = 10/199 (5%)
Query: 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 232
++++++ + ++M +I + PTP+QK IP + +D++ A+TGSGKT AF LPI
Sbjct: 15 ESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPI 73
Query: 233 MQRLLEERE-KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 291
+ ++ + +A + ++E G + K + +L++ PTRELA+Q+ + ++ + V
Sbjct: 74 LSQIYSDGPGEALRAMKENGRYGRR---KQYPISLVLAPTRELAVQIYEEARKFSYRSRV 130
Query: 292 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351
R + GG +Q R L+ L+V TPGRL ++M G+ + L + VLDEADRM
Sbjct: 131 RPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK---IGLDFCKYLVLDEADRM 187
Query: 352 IENGHFRELQSII--DMLP 368
++ G +++ I+ D +P
Sbjct: 188 LDMGFEPQIRRIVEQDTMP 206
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 26/207 (12%)
Query: 168 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 227
++T+ + + + L L+ I+ GF++P+PIQ+ IP A G+DI+ A+ G+GKT A
Sbjct: 16 LNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAA 74
Query: 228 FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK-GHLRALIITPTRELALQVTDHLKEVA 286
F +P + EK PK ++ALI+ PTRELALQ + ++ +
Sbjct: 75 FVIPTL---------------------EKVKPKLNKIQALIMVPTRELALQTSQVVRTLG 113
Query: 287 KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 346
K + + GG + L ++VGTPGR+ +L S + + +L S F++D
Sbjct: 114 KHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLAS---RKVADLSDCSLFIMD 170
Query: 347 EADRMIENGHFRELQSIIDMLPMTNGS 373
EAD+M+ ++ I+ LP T+ S
Sbjct: 171 EADKMLSRDFKTIIEQILSFLPPTHQS 197
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 27/198 (13%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 233
+ + L P L+++I GF+ P+ +Q CIP A G D++ A++G GKT F L +
Sbjct: 8 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATL 66
Query: 234 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVR 292
Q+L G + L++ TRELA Q++ + +K + NV+
Sbjct: 67 QQL--------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 106
Query: 293 VVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351
V GG+S +K E +LK P +VVGTPGR+ L + L + F+LDEAD+M
Sbjct: 107 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILDEADKM 163
Query: 352 IENGHF-RELQSIIDMLP 368
+E R++Q I M P
Sbjct: 164 LEQLDMRRDVQEIFRMTP 181
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 27/224 (12%)
Query: 146 EESVTVSNGPDDAEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPI-QKACI 204
++S + NGPD E E V E+ + D+++++ L L++ IY GF++P+ I Q+A +
Sbjct: 13 QDSRSRDNGPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAIL 72
Query: 205 PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 264
P +G D+I A++G+GKT F + I+Q+ +E KA +
Sbjct: 73 PCI--KGYDVIAQAQSGTGKTATFAISILQQ-IELDLKATQ------------------- 110
Query: 265 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ-ERLLKARPELVVGTPGRL 323
AL++ PTRELA Q+ + + + +GG + + ++L P ++VGTPGR+
Sbjct: 111 ALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 170
Query: 324 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 367
+++++ + + + FVLDEAD M+ G ++ I L
Sbjct: 171 FDMLN---RRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL 211
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 27/198 (13%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 233
+ + L P L+++I GF+ P+ +Q CIP A G D++ A++G GKT F L +
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATL 67
Query: 234 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVR 292
Q+L G + L++ TRELA Q++ + +K + NV+
Sbjct: 68 QQL--------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 107
Query: 293 VVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351
V GG+S +K E +LK P +VVGTPGR+ L + L + F+LDE D+M
Sbjct: 108 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILDECDKM 164
Query: 352 IENGHF-RELQSIIDMLP 368
+E R++Q I M P
Sbjct: 165 LEQLDMRRDVQEIFRMTP 182
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 27/198 (13%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM 233
+ + L P L+++I GF+ P+ +Q CIP A G D++ A++G GKT F L +
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATL 67
Query: 234 QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVR 292
Q+L G + L++ TRELA Q++ + +K + NV+
Sbjct: 68 QQL--------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK 107
Query: 293 VVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351
V GG+S +K E +LK P +VVGTPGR+ L + L + F+LDE D+M
Sbjct: 108 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILDECDKM 164
Query: 352 IENGHF-RELQSIIDMLP 368
+E R++Q I M P
Sbjct: 165 LEQLDMRRDVQEIFRMTP 182
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 27/209 (12%)
Query: 163 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGS 222
V + +S + + L P L+++I GF+ P+ +Q CIP A G D++ A++G
Sbjct: 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGM 62
Query: 223 GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 282
GKT F L +Q+L G + L++ TRELA Q++
Sbjct: 63 GKTAVFVLATLQQL--------------------EPVTGQVSVLVMCHTRELAFQISKEY 102
Query: 283 KEVAKGI-NVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTL 340
+ +K + NV+V GG+S +K E +LK P +VVGTPGR+ L + L +
Sbjct: 103 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHI 159
Query: 341 SFFVLDEADRMIENGHF-RELQSIIDMLP 368
F+LDE D+M+E R++Q I M P
Sbjct: 160 KHFILDECDKMLEQLDMRRDVQEIFRMTP 188
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 31/179 (17%)
Query: 186 KSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 245
++I +GFK T +Q IP QGK+++ A+TGSGKT A+ +PI+
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPIL------------ 53
Query: 246 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ 305
E G +++L++TPTREL QV H++++ + ++ +V + GGM + Q
Sbjct: 54 ---ELG-----------MKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQ 99
Query: 306 ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 364
++ ++VV TPGRL +L S G +++L + ++DEAD M E G +++ I+
Sbjct: 100 INRVR-NADIVVATPGRLLDLWSKG---VIDLSSFEIVIIDEADLMFEMGFIDDIKIIL 154
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 41/227 (18%)
Query: 184 LMKSIYRLGFKEPTPIQKACI-PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 242
+ K+I R+ F TP+Q+ I P + + D+I A+TG+GKT AF +PI Q L+
Sbjct: 32 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---- 87
Query: 243 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK---GI-NVRVVPIVG 298
K+ + ++A+I+ PTR+LALQ+ +K++ G+ V +VG
Sbjct: 88 ------------TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 135
Query: 299 GMSTE-KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 357
G ++ K RP +V+ TPGRL +++ + + VLDEADR++E G
Sbjct: 136 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFR 193
Query: 358 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 404
+L++I +L NE S+ +TL+FSAT+
Sbjct: 194 DDLETISGIL------NEKNSKSADNI-----------KTLLFSATL 223
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 116/246 (47%), Gaps = 51/246 (20%)
Query: 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 243
+M I R F EPT IQ P A G D++G A+TGSGKTL++ LP + + +
Sbjct: 40 VMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQP--- 95
Query: 244 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 303
E+G+ G + L++ PTRELA QV E + ++ I GG
Sbjct: 96 ---FLERGD--------GPI-CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 143
Query: 304 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 363
Q R L+ E+ + TPGRL + + G+ + L ++ VLDEADRM++ G +++ I
Sbjct: 144 PQIRDLERGVEICIATPGRLIDFLECGKTN---LRRTTYLVLDEADRMLDMGFEPQIRKI 200
Query: 364 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSADFRKKLKH-- 416
+D + R RQTL++SAT L+ DF K H
Sbjct: 201 VDQI------------------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN 236
Query: 417 -GSLKL 421
G+L+L
Sbjct: 237 IGALEL 242
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 116/214 (54%), Gaps = 33/214 (15%)
Query: 163 VSEAEISTEFDA----WNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKDIIGA 217
+ E++I T +D ++++ L L++ ++ GF+EP+ IQ +A +P +G D++
Sbjct: 8 IEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII--EGHDVLAQ 65
Query: 218 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 277
A++G+GKT F + +QR+ + AP+ AL++ PTRELALQ
Sbjct: 66 AQSGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALMLAPTRELALQ 105
Query: 278 VTDHLKEVAKGINVRVVPIVGGMS-TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 336
+ + +A ++++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 106 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRFR 160
Query: 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 370
+ F+LDEAD M+ +G ++ I +LP T
Sbjct: 161 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 194
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 111/238 (46%), Gaps = 48/238 (20%)
Query: 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 243
+M I R F EPT IQ P A G D++G A+TGSGKTL++ LP + + +
Sbjct: 54 VMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQ---- 108
Query: 244 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE 303
E+G+ G + L++ PTRELA QV E + ++ I GG
Sbjct: 109 --PFLERGD--------GPI-CLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 157
Query: 304 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 363
Q R L+ E+ + TPGRL + + G+ + L ++ VLDEADRM++ G +++ I
Sbjct: 158 PQIRDLERGVEICIATPGRLIDFLECGKTN---LRRTTYLVLDEADRMLDMGFEPQIRKI 214
Query: 364 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA-----LSADFRKKLKH 416
+D + R RQTL++SAT L+ DF K H
Sbjct: 215 VDQI------------------------RPDRQTLMWSATWPKEVRQLAEDFLKDYIH 248
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 27/216 (12%)
Query: 184 LMKSIYRLGFKEPTPIQKACI-PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 242
+ K+I R+ F TP+Q+ I P + + D+I A+TG+GKT AF +PI Q L+
Sbjct: 83 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---- 138
Query: 243 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK---GI-NVRVVPIVG 298
K+ + ++A+I+ PTR+LALQ+ +K++ G+ V +VG
Sbjct: 139 ------------TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 186
Query: 299 GMSTE-KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 357
G ++ K RP +V+ TPGRL +++ + + VLDEADR++E G
Sbjct: 187 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFR 244
Query: 358 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 393
+L++I +L N N ++ +T + ++L K
Sbjct: 245 DDLETISGIL---NEKNSKSADNIKTLLFSATLDDK 277
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 108/222 (48%), Gaps = 50/222 (22%)
Query: 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 244
+K + ++ T IQK I A QGKD++GAA+TGSGKTLAF +P+++ L
Sbjct: 37 LKGLQEAQYRLVTEIQKQTI-GLALQGKDVLGAAKTGSGKTLAFLVPVLEALYR------ 89
Query: 245 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEK 304
++ L LII+PTRELA Q + L++V K + I+GG +
Sbjct: 90 ----------LQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKH 139
Query: 305 Q-ERLLKARPELVVGTPGRLWELMSGGEKHLVELHT--LSFFVLDEADRMIENGHFRELQ 361
+ ER+ ++V TPGRL + M V H L VLDEADR+++ G +
Sbjct: 140 EAERI--NNINILVCTPGRLLQHMD----ETVSFHATDLQMLVLDEADRILDMGFADTMN 193
Query: 362 SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 403
++I+ LP KKRQTL+FSAT
Sbjct: 194 AVIENLP------------------------KKRQTLLFSAT 211
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 111/216 (51%), Gaps = 27/216 (12%)
Query: 184 LMKSIYRLGFKEPTPIQKACI-PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 242
+ K+I R+ F TP+Q+ I P + + D+I A+TG+GKT AF +PI Q L+
Sbjct: 32 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN---- 87
Query: 243 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK---GI-NVRVVPIVG 298
K+ + ++A+I+ PTR+LALQ+ +K++ G+ V +VG
Sbjct: 88 ------------TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 135
Query: 299 GMSTE-KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 357
G ++ K RP +V+ TPGRL +++ + + VLDEADR++E G
Sbjct: 136 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF--VDYKVLDEADRLLEIGFR 193
Query: 358 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRK 393
+L++I +L N N ++ +T + ++L K
Sbjct: 194 DDLETISGIL---NEKNSKSADNIKTLLFSATLDDK 226
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 115/213 (53%), Gaps = 33/213 (15%)
Query: 165 EAEISTEFDA----WNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKDIIGAAE 219
E++I T +D ++++ L L++ ++ GF+EP+ IQ +A +P +G D++ A+
Sbjct: 2 ESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII--EGHDVLAQAQ 59
Query: 220 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVT 279
+G+GKT F + +QR+ + AP+ AL++ PTRELALQ+
Sbjct: 60 SGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALMLAPTRELALQIQ 99
Query: 280 DHLKEVAKGINVRVVPIVGGMS-TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 338
+ +A ++++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 100 KVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRFRTD 154
Query: 339 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 371
+ F+LDEAD M+ +G ++ I +LP T
Sbjct: 155 KIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 49/226 (21%)
Query: 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 243
L+ I+ +G+++P+PIQ+ IP A G+DI+ A+ G+GK+ A+ +P+++RL
Sbjct: 14 LLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERL------- 65
Query: 244 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMST 302
K +++A++I PTRELALQV+ +V+K + +V+ GG +
Sbjct: 66 -------------DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNL 112
Query: 303 EKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQS 362
L +V+ TPGR+ +L+ G + ++ + VLDEAD+++ + ++
Sbjct: 113 RDDIMRLDDTVHVVIATPGRILDLIKKG---VAKVDHVQMIVLDEADKLLSQDFVQIMED 169
Query: 363 IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408
II LP K RQ L++SAT LS
Sbjct: 170 IILTLP------------------------KNRQILLYSATFPLSV 191
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 115/215 (53%), Gaps = 33/215 (15%)
Query: 163 VSEAEISTEFDA----WNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKDIIGA 217
+ E++I T + ++++ L L++ ++ GF+EP+ IQ +A +P +G D++
Sbjct: 7 IEESQIQTNYQKVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPII--EGHDVLAQ 64
Query: 218 AETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQ 277
A++G+GKT F + +QR+ + AP+ AL++ PTRELALQ
Sbjct: 65 AQSGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALMLAPTRELALQ 104
Query: 278 VTDHLKEVAKGINVRVVPIVGGMS-TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 336
+ + +A ++++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 105 IQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRFR 159
Query: 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 371
+ F+LDEAD M+ +G ++ I +LP T
Sbjct: 160 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 29/198 (14%)
Query: 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKDIIGAAETGSGKTLAFGLP 231
D ++++ L L++ IY GF++P+ IQ +A IP +G D+I A++G+GKT F +
Sbjct: 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCI--KGYDVIAQAQSGTGKTATFAIS 87
Query: 232 IMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 290
I+Q+L +E +E +AL++ PTRELA Q+ + + +
Sbjct: 88 ILQQLEIEFKET---------------------QALVLAPTRELAQQIQKVILALGDYMG 126
Query: 291 VRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 349
+GG + + + L+A P +VVGTPGR++++++ + + + FVLDEAD
Sbjct: 127 ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLN---RRYLSPKWIKMFVLDEAD 183
Query: 350 RMIENGHFRELQSIIDML 367
M+ G ++ I L
Sbjct: 184 EMLSRGFKDQIYEIFQKL 201
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 102/186 (54%), Gaps = 24/186 (12%)
Query: 177 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 236
E +++ L+++I GF+ PTPIQ IP H G++++ +A TGSGKTLAF +PI+ +L
Sbjct: 33 EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLH-GRELLASAPTGSGKTLAFSIPILMQL 91
Query: 237 LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPI 296
+ K RALII+PTRELA Q+ L ++++G R+ I
Sbjct: 92 KQPANKG-------------------FRALIISPTRELASQIHRELIKISEGTGFRIHMI 132
Query: 297 -VGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 355
++ +K + +++V TP RL L+ ++L ++ + V+DE+D++ E+G
Sbjct: 133 HKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPG-IDLASVEWLVVDESDKLFEDG 191
Query: 356 H--FRE 359
FR+
Sbjct: 192 KTGFRD 197
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 29/212 (13%)
Query: 158 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 217
E E E +++ FD + L L++ IY GF++P+ IQ+ I +G+D+I
Sbjct: 25 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQ 80
Query: 218 AETGSGKTLAFGLPIMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA+
Sbjct: 81 SQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELAV 119
Query: 277 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 336
Q+ L + +NV+ +GG + + R L +V GTPGR+++++ + +
Sbjct: 120 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLR 176
Query: 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368
+ VLDEAD M+ G ++ + LP
Sbjct: 177 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 208
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 29/212 (13%)
Query: 158 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 217
E E E +++ FD + L L++ IY GF++P+ IQ+ I +G+D+I
Sbjct: 26 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQ 81
Query: 218 AETGSGKTLAFGLPIMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA+
Sbjct: 82 SQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELAV 120
Query: 277 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 336
Q+ L + +NV+ +GG + + R L +V GTPGR+++++ + +
Sbjct: 121 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLR 177
Query: 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368
+ VLDEAD M+ G ++ + LP
Sbjct: 178 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 209
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 29/212 (13%)
Query: 158 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 217
E E E +++ FD + L L++ IY GF++P+ IQ+ I +G+D+I
Sbjct: 26 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQ 81
Query: 218 AETGSGKTLAFGLPIMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA+
Sbjct: 82 SQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELAV 120
Query: 277 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 336
Q+ L + +NV+ +GG + + R L +V GTPGR+++++ + +
Sbjct: 121 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLR 177
Query: 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368
+ VLDEAD M+ G ++ + LP
Sbjct: 178 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 209
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 110/213 (51%), Gaps = 31/213 (14%)
Query: 163 VSEAEISTEFDA----WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAA 218
+ E++I T +D +++ L L++ ++ GF+EP+ IQ+ I +G D++ A
Sbjct: 7 IEESQIQTNYDKVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPII-EGHDVLAQA 65
Query: 219 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 278
++G+GKT F + +QR+ + AP+ AL + PTRELALQ+
Sbjct: 66 QSGTGKTGTFSIAALQRI----------------DTSVKAPQ----ALXLAPTRELALQI 105
Query: 279 TDHLKEVAKGINVRVVPIVGGMS-TEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 337
+ +A +++V +GG S E E L A ++VVGTPGR+++ + ++
Sbjct: 106 QKVVXALAFHXDIKVHACIGGTSFVEDAEGLRDA--QIVVGTPGRVFDNI---QRRRFRT 160
Query: 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 370
+ F+LDEAD + +G ++ I +LP T
Sbjct: 161 DKIKXFILDEADEXLSSGFKEQIYQIFTLLPPT 193
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 29/212 (13%)
Query: 158 AEEELVSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGA 217
E E E +++ FD + L L++ IY GF++P+ IQ+ I +G+D+I
Sbjct: 4 VEFETSEEVDVTPTFDT---MGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQ 59
Query: 218 AETGSGKTLAFGLPIMQRL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276
+++G+GKT F + ++Q L ++ RE +ALI+ PTRELA+
Sbjct: 60 SQSGTGKTATFSISVLQCLDIQVRET---------------------QALILAPTRELAV 98
Query: 277 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVE 336
Q+ L + +NV+ +GG + + R L +V GTPGR+++++ + +
Sbjct: 99 QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLR 155
Query: 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368
+ VLDEAD M+ G ++ + LP
Sbjct: 156 TRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP 187
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 43/219 (19%)
Query: 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 244
+K+I +GF T IQ I +G+D++ AA+TGSGKTLAF +P ++ +++ R
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLR---- 120
Query: 245 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEK 304
+ P+ LI++PTRELA+Q LKE+ I+GG +
Sbjct: 121 ------------FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSA 168
Query: 305 QERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 364
+ + L ++V TPGRL + M + + L V+DEADR+++ G EL+ II
Sbjct: 169 EAQKLGNGINIIVATPGRLLDHMQNTPGFMYK--NLQCLVIDEADRILDVGFEEELKQII 226
Query: 365 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSAT 403
+LP +RQT++FSAT
Sbjct: 227 KLLP------------------------TRRQTMLFSAT 241
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 52/258 (20%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPI 232
+++EL L P L+K IY + F++P+ IQ+ +P H +++I +++G+GKT AF L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 233 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 292
+ R+ E +P+ A+ + P+RELA Q + ++E+ K +
Sbjct: 66 LTRV----------------NPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKIT 105
Query: 293 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352
IV S EK +++ +++VGTPG + +LM + L++L + FVLDEAD M+
Sbjct: 106 SQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNML 158
Query: 353 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA-DFR 411
+ +G +Q C+ V K Q ++FSAT A + +
Sbjct: 159 D--------------------QQGLGDQ---CIRVKRFLPKDTQLVLFSATFADAVRQYA 195
Query: 412 KKLKHGSLKLKQSVNGLN 429
KK+ + L+ N +N
Sbjct: 196 KKIVPNANTLELQTNEVN 213
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 52/258 (20%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPI 232
+++EL L P L+K IY + F++P+ IQ+ +P H +++I +++G+GKT AF L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 233 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 292
+ R+ E +P+ A+ + P+RELA Q + ++E+ K +
Sbjct: 66 LTRV----------------NPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKIT 105
Query: 293 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352
IV S EK +++ +++VGTPG + +LM + L++L + FVLDEAD M+
Sbjct: 106 SQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNML 158
Query: 353 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA-DFR 411
+ +G +Q C+ V K Q ++FSAT A + +
Sbjct: 159 D--------------------QQGLGDQ---CIRVKRFLPKDTQLVLFSATFADAVRQYA 195
Query: 412 KKLKHGSLKLKQSVNGLN 429
KK+ + L+ N +N
Sbjct: 196 KKIVPNANTLELQTNEVN 213
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 103/197 (52%), Gaps = 27/197 (13%)
Query: 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAAAHQGKDIIGAAETGSGKTLAFGLP 231
D+++++ L L++ IY GF++P+ IQ +A +P +G D+I A++G+GKT F +
Sbjct: 14 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI--KGYDVIAQAQSGTGKTATFAIS 71
Query: 232 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 291
I+Q+ +E KA + AL++ PTRELA Q+ + + +
Sbjct: 72 ILQQ-IELDLKATQ-------------------ALVLAPTRELAQQIQKVVMALGDYMGA 111
Query: 292 RVVPIVGGMSTEKQ-ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 350
+GG + + ++L P ++VGTPGR++++++ + + + FVLDEAD
Sbjct: 112 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN---RRYLSPKYIKMFVLDEADE 168
Query: 351 MIENGHFRELQSIIDML 367
M+ G ++ I L
Sbjct: 169 MLSRGFKDQIYDIFQKL 185
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 51/233 (21%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPI 232
+++EL L P L+K IY + F++P+ IQ+ +P H +++I +++G+GKT AF L +
Sbjct: 23 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 82
Query: 233 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 292
+ R+ E +P+ A+ + P+RELA Q + ++E+ K +
Sbjct: 83 LTRV----------------NPEDASPQ----AICLAPSRELARQTLEVVQEMGKFTKIT 122
Query: 293 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352
IV S EK +++ +++VGTPG + +LM + L++L + FVLDEAD M+
Sbjct: 123 SQLIVPD-SFEKNKQI---NAQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNML 175
Query: 353 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405
+ +G +Q C+ V K Q ++FSAT A
Sbjct: 176 D--------------------QQGLGDQ---CIRVKRFLPKDTQLVLFSATFA 205
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 26/186 (13%)
Query: 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL-LEEREK 242
L++ IY GF++P+ IQ+ I +G+D+I +++G+GKT F + ++Q L ++ RE
Sbjct: 12 LLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRET 70
Query: 243 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST 302
+ALI+ PTRELA+QV L + +NV+ +GG +
Sbjct: 71 ---------------------QALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNV 109
Query: 303 EKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQS 362
+ R L +V GTPGR+++++ + + + VLDEAD M+ G ++
Sbjct: 110 GEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLRTRAIKMLVLDEADEMLNKGFKEQIYD 166
Query: 363 IIDMLP 368
+ LP
Sbjct: 167 VYRYLP 172
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 26/195 (13%)
Query: 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 234
++ + L L++ IY GF++P+ IQ+ I +G+D+I +++G+GKT F + ++Q
Sbjct: 3 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 235 RL-LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 293
L ++ RE +ALI+ PTRELA+QV L + +NV+
Sbjct: 62 CLDIQVRET---------------------QALILAPTRELAVQVQKGLLALGDYMNVQS 100
Query: 294 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353
+GG + + R L +V GTPGR+++++ + + + VLDEAD M+
Sbjct: 101 HACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI---RRRSLRTRAIKMLVLDEADEMLN 157
Query: 354 NGHFRELQSIIDMLP 368
G ++ + LP
Sbjct: 158 KGFKEQIYDVYRYLP 172
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 107/236 (45%), Gaps = 56/236 (23%)
Query: 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQ 234
+ P ++++I L F +PT IQ+ IP A +G+ +G ++TG+GKT A+ LPI +
Sbjct: 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGESXVGQSQTGTGKTHAYLLPIXE 64
Query: 235 RLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK------G 288
++ ER ++A+I PTRELA Q+ ++ K
Sbjct: 65 KIKPER--------------------AEVQAVITAPTRELATQIYHETLKITKFCPKDRX 104
Query: 289 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348
I R ++GG +K L +P +V+GTPGR+ + + + +++HT V+DEA
Sbjct: 105 IVARC--LIGGTDKQKALEKLNVQPHIVIGTPGRINDFI---REQALDVHTAHILVVDEA 159
Query: 349 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 404
D ++ G ++ I P K Q LVFSATI
Sbjct: 160 DLXLDXGFITDVDQIAARXP------------------------KDLQXLVFSATI 191
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 102/197 (51%), Gaps = 27/197 (13%)
Query: 173 DAWNELRLHPLLMKSIYRLGFKEPTPI-QKACIPAAAHQGKDIIGAAETGSGKTLAFGLP 231
D+++++ L L++ IY GF+ P+ I Q+A +P G D+I A++G+G T F +
Sbjct: 15 DSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIX--GYDVIAQAQSGTGXTATFAIS 72
Query: 232 IMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 291
I+Q++ E + A + AL++ PTRELA Q+ + + +
Sbjct: 73 ILQQI----------------ELDLXATQ----ALVLAPTRELAQQIQXVVMALGDYMGA 112
Query: 292 RVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 350
+GG + + + L+ P ++VGTPGR++++++ ++L + + FVLDEAD
Sbjct: 113 SCHACIGGTNVRAEVQXLQMEAPHIIVGTPGRVFDMLN--RRYLSPXY-IXMFVLDEADE 169
Query: 351 MIENGHFRELQSIIDML 367
M+ G ++ I L
Sbjct: 170 MLSRGFXDQIYDIFQXL 186
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 96/188 (51%), Gaps = 36/188 (19%)
Query: 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPI 232
DA+ + +P L+KSI R+G +PTPIQ P QG D+I A+TG+GKTL++ +P
Sbjct: 23 DAFQQ---YPDLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPG 78
Query: 233 MQRL------LEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV-TDHLKEV 285
L E+R G L++TPTRELAL V + K
Sbjct: 79 FIHLDSQPISREQRNGPG--------------------MLVLTPTRELALHVEAECSKYS 118
Query: 286 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 345
KG+ + + I GG + Q + ++++ TPGRL +L V L ++++ V+
Sbjct: 119 YKGL--KSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNLRSITYLVI 173
Query: 346 DEADRMIE 353
DEAD+M++
Sbjct: 174 DEADKMLD 181
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 28/198 (14%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIP-AAAHQGKDIIGAAETGSGKTLAFGLPI 232
++ ELRL P L++ +Y +GF P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 233 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 291
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 153 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 192
Query: 292 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 193 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 247
Query: 352 IE-NGHFRELQSIIDMLP 368
I GH + I MLP
Sbjct: 248 IATQGHQDQSIRIQRMLP 265
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 28/198 (14%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIP-AAAHQGKDIIGAAETGSGKTLAFGLPI 232
++ ELRL P L++ +Y +GF P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 233 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 291
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 153 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 192
Query: 292 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 193 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 247
Query: 352 IE-NGHFRELQSIIDMLP 368
I GH + I MLP
Sbjct: 248 IATQGHQDQSIRIQRMLP 265
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 28/198 (14%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIP-AAAHQGKDIIGAAETGSGKTLAFGLPI 232
++ ELRL P L++ +Y +GF P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 63 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 122
Query: 233 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 291
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 123 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 162
Query: 292 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 163 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 217
Query: 352 IE-NGHFRELQSIIDMLP 368
I GH + I MLP
Sbjct: 218 IATQGHQDQSIRIQRMLP 235
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 28/198 (14%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIP-AAAHQGKDIIGAAETGSGKTLAFGLPI 232
++ ELRL P L++ +Y +GF P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 42 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 101
Query: 233 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 291
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 102 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 141
Query: 292 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 142 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 196
Query: 352 IE-NGHFRELQSIIDMLP 368
I GH + I MLP
Sbjct: 197 IATQGHQDQSIRIQRMLP 214
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 28/198 (14%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIP-AAAHQGKDIIGAAETGSGKTLAFGLPI 232
++ ELRL P L++ +Y +GF P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 233 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 291
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 86 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 125
Query: 292 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 126 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 180
Query: 352 IE-NGHFRELQSIIDMLP 368
I GH + I MLP
Sbjct: 181 IATQGHQDQSIRIQRMLP 198
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 102/198 (51%), Gaps = 28/198 (14%)
Query: 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIP-AAAHQGKDIIGAAETGSGKTLAFGLPI 232
++ ELRL P L++ +Y +GF P+ IQ+ +P A +++I +++G+GKT AF L +
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 233 MQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV 291
+ ++ E A KY + L ++PT ELALQ ++++ K +
Sbjct: 86 LSQV---------------EPANKYP-----QCLCLSPTYELALQTGKVIEQMGKFYPEL 125
Query: 292 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351
++ V G K ER K ++V+GTPG + + S + ++ + FVLDEAD M
Sbjct: 126 KLAYAVRG---NKLERGQKISEQIVIGTPGTVLDWCS--KLKFIDPKKIKVFVLDEADVM 180
Query: 352 IE-NGHFRELQSIIDMLP 368
I GH + I MLP
Sbjct: 181 IATQGHQDQSIRIQRMLP 198
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 40/176 (22%)
Query: 192 GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251
GF+ P+P+Q IP G D+I A++G+GKT F + L+ E
Sbjct: 43 GFERPSPVQLKAIPLG-RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST-------- 93
Query: 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA---KGINVRVVPIVGGMSTEKQERL 308
+ LI+ PTRE+A+Q+ + + +G+ V +GG + +
Sbjct: 94 ------------QILILAPTREIAVQIHSVITAIGIKMEGLECHV--FIGGTPLSQDKTR 139
Query: 309 LKARPELVVGTPGRLWELMSGGEKHLVELHTLS-----FFVLDEADRMIENGHFRE 359
LK + + VG+PGR+ K L+EL L+ F+LDEAD+++E G F+E
Sbjct: 140 LK-KCHIAVGSPGRI--------KQLIELDYLNPGSIRLFILDEADKLLEEGSFQE 186
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 28/156 (17%)
Query: 199 IQKACIPAA-AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 257
IQ+ +P ++ +++IG +++G+GKT AF L ++ R+ +
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV------------------DAS 186
Query: 258 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVV 317
PK A+ + P+RELA Q+ D + E+ K V+ + + + K ++V+
Sbjct: 187 VPKPQ--AICLAPSRELARQIMDVVTEMGKYTEVKTAFGI----KDSVPKGAKIDAQIVI 240
Query: 318 GTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353
GTPG + +LM ++ ++ + FVLDEAD M++
Sbjct: 241 GTPGTVMDLM---KRRQLDARDIKVFVLDEADNMLD 273
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 244
+S+Y+ F PIQ + ++ A TGSGKT+ I++ LL+ E
Sbjct: 916 FESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-- 973
Query: 245 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQV-TDHLKEVAKGINVRVVPIVGGMSTE 303
R + ITP LA QV D ++ +N +VV + G ST+
Sbjct: 974 -------------------RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1014
Query: 304 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348
+ L + +++ TP + W+++S K + ++ FV+DE
Sbjct: 1015 LK---LLGKGNIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEV 1055
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 20/158 (12%)
Query: 192 GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251
GFK IQ AA ++++ A TG+GKT + +M L E GK + G
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKT---NVALMCMLRE----IGKHINMDG 128
Query: 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA 311
+ + I P R L ++ + + V + G K+E +
Sbjct: 129 T-----INVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---IS 180
Query: 312 RPELVVGTPGRLWELMS--GGEKHLVELHTLSFFVLDE 347
+++V TP + W++++ GGE+ +L + +LDE
Sbjct: 181 ATQIIVCTPEK-WDIITRKGGERTYTQL--VRLIILDE 215
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 244
+S+Y+ F PIQ + ++ A TGSGKT+ I++ LL+ E
Sbjct: 916 FESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-- 973
Query: 245 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQV-TDHLKEVAKGINVRVVPIVGGMSTE 303
R + ITP LA QV D ++ +N +VV + G ST+
Sbjct: 974 -------------------RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1014
Query: 304 KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348
+ L + +++ TP + W+++S K + ++ FV+DE
Sbjct: 1015 LK---LLGKGNIIISTPEK-WDILSRRWKQRKNVQNINLFVVDEV 1055
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 20/158 (12%)
Query: 192 GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251
GFK IQ AA ++++ A TG+GKT + +M L E GK + G
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKT---NVALMCMLRE----IGKHINMDG 128
Query: 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA 311
+ + I P R L ++ + + V + G K+E +
Sbjct: 129 T-----INVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---IS 180
Query: 312 RPELVVGTPGRLWELMS--GGEKHLVELHTLSFFVLDE 347
+++V TP + W++++ GGE+ +L + +LDE
Sbjct: 181 ATQIIVCTPEK-WDIITRKGGERTYTQL--VRLIILDE 215
>pdb|2QYT|A Chain A, Crystal Structure Of 2-Dehydropantoate 2-Reductase From
Porphyromonas Gingivalis W83
Length = 317
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 279 TDHLKEV---AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLV 335
TD L EV A+G ++ + GG+ R ARP V P
Sbjct: 34 TDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPA-------------- 79
Query: 336 ELHTLSFFVLDEADRMIENGHFRELQSII----DMLPMTNGSNEGQSEQT--------QT 383
E+ T+ + + D E G E++ I +LP+ NG++ + +T +
Sbjct: 80 EVGTVDYILFCTKDYDXERG-VAEIRPXIGQNTKILPLLNGADIAERXRTYLPDTVVWKG 138
Query: 384 CVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETLSERAGMRA 442
CV +S+ RK L I L AD R+ GS +Q+ + + E L+ AG+RA
Sbjct: 139 CVYISA--RKSAPGL-----ITLEAD-RELFYFGSGLPEQTDDEVRLAELLTA-AGIRA 188
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 177 ELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 236
+L+L +++ I + G K+ P Q + +G ++ + TGSGKTL + I+ L
Sbjct: 12 DLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFL 71
Query: 237 LEEREKAGKMLEEKGEEAEKY 257
L+ KA + + EKY
Sbjct: 72 LKNGGKAIYVTPLRALTNEKY 92
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|C Chain C, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOP|D Chain D, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90, Bound To Adp
pdb|2IOQ|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
pdb|2IOQ|B Chain B, Crystal Structure Of Full-Length Htpg, The Escherichia
Coli Hsp90
Length = 624
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 324 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM--LPMTNGSNEGQSEQT 381
W++ + KH ++L+ F++D+A++ + N + R ++ +ID LP+ N S E + T
Sbjct: 286 WDMWNRDHKHGLKLYVQRVFIMDDAEQFMPN-YLRFVRGLIDSSDLPL-NVSREILQDST 343
Query: 382 QTCVTVSSLQRKKRQTL 398
T ++L ++ Q L
Sbjct: 344 VTRNLRNALTKRVLQML 360
>pdb|2GQ0|A Chain A, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
pdb|2GQ0|B Chain B, Crystal Structure Of The Middle Domain Of Htpg, The E.
Coli Hsp90
Length = 303
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 324 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM--LPMTNGSNEGQSEQT 381
W++ + KH ++L+ F++D+A++ + N + R ++ +ID LP+ N S E + T
Sbjct: 58 WDMWNRDHKHGLKLYVQRVFIMDDAEQFMPN-YLRFVRGLIDSSDLPL-NVSREILQDST 115
Query: 382 QTCVTVSSLQRKKRQTL 398
T ++L ++ Q L
Sbjct: 116 VTRNLRNALTKRVLQML 132
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 176 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQR 235
+ELR+ + ++ G + P Q + + +GK+ + + T SGKTL + ++ R
Sbjct: 4 DELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHR 63
Query: 236 LLEEREKAGKMLEEKGEEAEKY 257
+L + KA ++ K EK+
Sbjct: 64 ILTQGGKAVYIVPLKALAEEKF 85
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4S|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
pdb|1Y4U|B Chain B, Conformation Rearrangement Of Heat Shock Protein 90 Upon
Adp Binding
Length = 559
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 324 WELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM--LPMTNGSNEGQSEQT 381
W++ + KH ++L+ F++D+A++ + N + R ++ +ID LP+ N S E + T
Sbjct: 286 WDMWNRDHKHGLKLYVQRVFIMDDAEQFMPN-YLRFVRGLIDSSDLPL-NVSREILQDST 343
Query: 382 QTCVTVSSLQRKKRQTL 398
T ++L ++ Q L
Sbjct: 344 VTRNLRNALTKRVLQML 360
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 308 LLKARPELVVGTPGRL---WELMSGGEKHLVELHTL---------SFFVLDEADRMIEN 354
+L A E+ + PGR L+SGGEK LV L L F+VLDE D +++
Sbjct: 198 ILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD 256
>pdb|3H7M|A Chain A, Crystal Structure Of A Histidine Kinase Sensor Domain With
Similarity To Periplasmic Binding Proteins
Length = 234
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 247 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE 306
L G E A +G+ + L++TPT AL++ A G + VV +V GM ++
Sbjct: 122 LHRDGIMHEYLAERGYGKDLVLTPTPADALRLL-----AAGGCDYAVVAMVPGMYIIREN 176
Query: 307 RLLKARP 313
RL P
Sbjct: 177 RLTNLVP 183
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 339 TLSFFVLDEAD--RMIENGHFRELQSIIDMLPMTNGSNEG 376
T+S V +EAD R I+ FR +D +PMT N G
Sbjct: 449 TMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSG 488
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,325,880
Number of Sequences: 62578
Number of extensions: 435722
Number of successful extensions: 1205
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 65
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)