Query 012337
Match_columns 465
No_of_seqs 449 out of 3002
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 01:34:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0347 RNA helicase [RNA proc 100.0 1.4E-45 3E-50 366.6 19.4 268 170-465 178-445 (731)
2 KOG0338 ATP-dependent RNA heli 100.0 3.5E-43 7.6E-48 346.8 18.3 192 172-407 180-371 (691)
3 KOG0330 ATP-dependent RNA heli 100.0 2E-41 4.4E-46 325.3 18.5 191 171-408 59-249 (476)
4 KOG0331 ATP-dependent RNA heli 100.0 3.2E-39 6.9E-44 328.5 19.0 193 174-407 92-284 (519)
5 COG0513 SrmB Superfamily II DN 100.0 1.7E-37 3.7E-42 326.5 23.4 188 173-406 29-217 (513)
6 KOG0343 RNA Helicase [RNA proc 100.0 3.5E-38 7.6E-43 313.9 15.7 200 171-414 67-266 (758)
7 KOG0342 ATP-dependent RNA heli 100.0 1.6E-36 3.4E-41 299.5 18.6 193 173-408 82-275 (543)
8 KOG0348 ATP-dependent RNA heli 100.0 1.5E-36 3.3E-41 301.4 15.5 215 172-414 135-351 (708)
9 PTZ00110 helicase; Provisional 100.0 1.3E-35 2.7E-40 315.0 22.8 205 167-414 124-329 (545)
10 KOG0345 ATP-dependent RNA heli 100.0 1.1E-35 2.4E-40 291.8 20.1 196 173-409 4-203 (567)
11 KOG0340 ATP-dependent RNA heli 100.0 1.2E-35 2.6E-40 282.6 17.3 192 172-408 6-198 (442)
12 KOG0339 ATP-dependent RNA heli 100.0 7.9E-36 1.7E-40 294.5 15.5 202 163-407 213-414 (731)
13 KOG0341 DEAD-box protein abstr 100.0 9.8E-37 2.1E-41 292.4 8.2 245 165-449 162-413 (610)
14 KOG0333 U5 snRNP-like RNA heli 100.0 1.8E-35 3.9E-40 293.4 17.0 229 165-408 237-466 (673)
15 PRK04837 ATP-dependent RNA hel 100.0 9.3E-35 2E-39 300.9 23.1 196 173-407 8-203 (423)
16 PLN00206 DEAD-box ATP-dependen 100.0 9.3E-35 2E-39 307.3 23.5 206 167-414 115-321 (518)
17 KOG0326 ATP-dependent RNA heli 100.0 1E-35 2.2E-40 279.3 11.8 245 171-463 83-346 (459)
18 KOG0335 ATP-dependent RNA heli 100.0 1.1E-35 2.4E-40 297.9 12.7 209 166-408 67-276 (482)
19 PRK10590 ATP-dependent RNA hel 100.0 3.1E-34 6.7E-39 299.4 23.1 199 174-414 2-201 (456)
20 KOG0346 RNA helicase [RNA proc 100.0 1E-34 2.2E-39 282.8 15.8 203 172-415 18-222 (569)
21 PRK04537 ATP-dependent RNA hel 100.0 6.6E-34 1.4E-38 303.0 23.1 197 173-407 9-205 (572)
22 PRK11776 ATP-dependent RNA hel 100.0 1.2E-33 2.6E-38 295.7 23.3 187 173-407 4-191 (460)
23 PRK11634 ATP-dependent RNA hel 100.0 3.1E-33 6.7E-38 299.8 26.7 188 173-408 6-194 (629)
24 PRK11192 ATP-dependent RNA hel 100.0 3.1E-33 6.8E-38 290.5 23.6 198 174-415 2-201 (434)
25 KOG0334 RNA helicase [RNA proc 100.0 5.2E-34 1.1E-38 304.0 12.0 203 166-408 358-560 (997)
26 KOG0337 ATP-dependent RNA heli 100.0 2.1E-33 4.5E-38 272.4 14.5 188 173-407 21-208 (529)
27 KOG0328 Predicted ATP-dependen 100.0 8.2E-33 1.8E-37 255.9 15.9 188 171-406 25-212 (400)
28 KOG0336 ATP-dependent RNA heli 100.0 2.8E-33 6E-38 270.3 11.3 198 168-408 214-412 (629)
29 PRK01297 ATP-dependent RNA hel 100.0 1.5E-31 3.3E-36 280.7 22.7 196 172-406 86-282 (475)
30 KOG2340 Uncharacterized conser 100.0 2.2E-31 4.7E-36 264.5 16.0 212 193-406 214-481 (698)
31 PTZ00424 helicase 45; Provisio 100.0 1.8E-30 3.9E-35 267.2 22.8 188 172-407 27-214 (401)
32 cd00268 DEADc DEAD-box helicas 100.0 6.6E-30 1.4E-34 238.2 23.5 186 175-406 1-186 (203)
33 TIGR03817 DECH_helic helicase/ 100.0 1.8E-29 3.9E-34 275.7 21.1 196 179-416 20-216 (742)
34 KOG0350 DEAD-box ATP-dependent 100.0 4.1E-30 8.8E-35 254.2 14.3 215 181-416 145-382 (620)
35 PRK02362 ski2-like helicase; P 100.0 1.3E-28 2.9E-33 270.8 19.0 192 174-416 2-193 (737)
36 KOG0327 Translation initiation 100.0 4.3E-29 9.4E-34 241.0 13.1 189 171-407 24-213 (397)
37 KOG0329 ATP-dependent RNA heli 100.0 2E-28 4.4E-33 223.9 15.8 187 173-407 42-230 (387)
38 PRK00254 ski2-like helicase; P 100.0 3.6E-28 7.8E-33 266.8 20.4 190 174-416 2-191 (720)
39 KOG4284 DEAD box protein [Tran 100.0 1.9E-28 4.1E-33 248.1 13.5 187 170-405 22-210 (980)
40 PRK13767 ATP-dependent helicas 99.9 1.4E-26 3.1E-31 257.6 20.7 200 180-416 18-229 (876)
41 PF00270 DEAD: DEAD/DEAH box h 99.9 5.7E-26 1.2E-30 205.0 19.7 162 197-405 1-163 (169)
42 PRK01172 ski2-like helicase; P 99.9 4.7E-26 1E-30 248.7 18.8 191 174-417 2-192 (674)
43 COG1201 Lhr Lhr-like helicases 99.9 9E-26 2E-30 242.1 17.7 200 180-418 8-207 (814)
44 KOG0332 ATP-dependent RNA heli 99.9 1.3E-25 2.8E-30 215.5 10.6 194 172-414 89-285 (477)
45 KOG0344 ATP-dependent RNA heli 99.9 1.8E-25 4E-30 226.1 12.3 208 166-415 125-340 (593)
46 PRK09401 reverse gyrase; Revie 99.9 4.8E-23 1E-27 232.9 21.7 184 191-406 77-280 (1176)
47 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.5E-23 5.4E-28 224.6 17.4 168 191-406 12-217 (844)
48 COG1205 Distinct helicase fami 99.9 3.6E-23 7.8E-28 227.4 17.8 197 181-417 56-255 (851)
49 PLN03137 ATP-dependent DNA hel 99.9 1.1E-22 2.3E-27 223.0 21.1 185 174-415 436-639 (1195)
50 COG1204 Superfamily II helicas 99.9 3.3E-23 7.2E-28 224.8 14.8 190 179-418 15-204 (766)
51 TIGR00614 recQ_fam ATP-depende 99.9 1.3E-22 2.8E-27 212.7 17.6 167 190-414 6-184 (470)
52 TIGR01054 rgy reverse gyrase. 99.9 5.9E-22 1.3E-26 224.3 19.7 155 184-368 67-240 (1171)
53 PF06862 DUF1253: Protein of u 99.9 1.1E-22 2.3E-27 205.8 11.5 157 251-408 26-229 (442)
54 KOG0952 DNA/RNA helicase MER3/ 99.9 9.3E-23 2E-27 216.9 10.8 192 191-417 106-298 (1230)
55 PRK09751 putative ATP-dependen 99.9 3E-22 6.6E-27 227.5 15.7 169 216-416 1-181 (1490)
56 PRK14701 reverse gyrase; Provi 99.9 1.3E-21 2.8E-26 225.9 20.4 150 183-362 67-234 (1638)
57 PRK11057 ATP-dependent DNA hel 99.9 3.4E-21 7.4E-26 207.5 20.1 171 183-414 12-196 (607)
58 TIGR00580 mfd transcription-re 99.9 4E-21 8.6E-26 212.7 19.4 166 180-406 436-611 (926)
59 TIGR01389 recQ ATP-dependent D 99.9 4.3E-21 9.3E-26 206.8 19.2 166 191-415 9-185 (591)
60 PRK10917 ATP-dependent DNA hel 99.9 5.1E-21 1.1E-25 208.4 18.2 134 186-352 253-396 (681)
61 PRK12899 secA preprotein trans 99.9 4.4E-21 9.5E-26 206.5 15.4 147 177-352 66-228 (970)
62 TIGR00643 recG ATP-dependent D 99.9 1.2E-20 2.6E-25 204.1 18.4 138 183-352 224-370 (630)
63 COG1202 Superfamily II helicas 99.9 2.7E-21 5.8E-26 194.6 11.7 198 173-417 194-395 (830)
64 PRK10689 transcription-repair 99.8 1.8E-20 3.9E-25 211.7 19.3 162 183-406 589-760 (1147)
65 KOG0349 Putative DEAD-box RNA 99.8 2.8E-20 6E-25 181.6 10.6 124 261-405 285-411 (725)
66 smart00487 DEXDc DEAD-like hel 99.8 1.7E-18 3.6E-23 158.7 20.1 169 191-408 4-174 (201)
67 COG4581 Superfamily II RNA hel 99.8 1.1E-19 2.3E-24 198.3 13.2 173 187-418 112-284 (1041)
68 PHA02558 uvsW UvsW helicase; P 99.8 8.5E-19 1.9E-23 185.0 15.7 150 194-407 113-262 (501)
69 TIGR01970 DEAH_box_HrpB ATP-de 99.8 4E-18 8.7E-23 187.1 17.4 154 202-414 9-165 (819)
70 PHA02653 RNA helicase NPH-II; 99.8 4.1E-18 8.9E-23 183.0 15.0 163 198-414 167-342 (675)
71 PRK11664 ATP-dependent RNA hel 99.8 6.2E-18 1.3E-22 185.9 16.4 150 207-414 16-168 (812)
72 KOG0947 Cytoplasmic exosomal R 99.8 1.6E-18 3.6E-23 182.9 11.2 172 187-421 290-461 (1248)
73 KOG0354 DEAD-box like helicase 99.8 5.1E-18 1.1E-22 178.9 14.9 164 195-408 62-225 (746)
74 PRK13766 Hef nuclease; Provisi 99.8 7.3E-17 1.6E-21 179.5 22.5 162 194-407 14-175 (773)
75 KOG0948 Nuclear exosomal RNA h 99.7 3.7E-18 7.9E-23 176.4 10.8 161 195-417 129-289 (1041)
76 COG1111 MPH1 ERCC4-like helica 99.7 6.9E-17 1.5E-21 161.9 19.4 169 195-415 15-183 (542)
77 TIGR01587 cas3_core CRISPR-ass 99.7 6.1E-18 1.3E-22 171.5 10.7 145 213-405 1-166 (358)
78 PRK05580 primosome assembly pr 99.7 1.3E-16 2.7E-21 173.6 19.6 122 195-352 144-271 (679)
79 TIGR00963 secA preprotein tran 99.7 4.5E-17 9.9E-22 173.7 14.6 133 191-352 53-189 (745)
80 TIGR03158 cas3_cyano CRISPR-as 99.7 7E-17 1.5E-21 163.4 14.7 128 199-353 1-159 (357)
81 PRK12898 secA preprotein trans 99.7 1E-16 2.2E-21 170.1 14.8 133 191-352 100-255 (656)
82 PRK09200 preprotein translocas 99.7 1.9E-16 4.1E-21 171.4 14.2 134 191-352 75-212 (790)
83 COG0514 RecQ Superfamily II DN 99.7 6.3E-16 1.4E-20 161.2 17.3 172 186-416 7-190 (590)
84 cd00046 DEXDc DEAD-like helica 99.7 1.8E-15 3.9E-20 130.5 17.3 144 212-404 1-144 (144)
85 PRK13104 secA preprotein trans 99.7 3.8E-16 8.3E-21 168.9 15.8 133 191-352 79-215 (896)
86 TIGR03714 secA2 accessory Sec 99.7 2.2E-16 4.9E-21 169.4 13.4 135 191-352 67-208 (762)
87 KOG0951 RNA helicase BRR2, DEA 99.7 1.8E-16 3.9E-21 171.4 10.1 247 180-462 296-569 (1674)
88 KOG0352 ATP-dependent DNA heli 99.6 7.3E-15 1.6E-19 143.9 14.8 165 183-406 6-188 (641)
89 TIGR00595 priA primosomal prot 99.6 1.7E-14 3.8E-19 151.7 15.9 102 215-352 1-106 (505)
90 PF04851 ResIII: Type III rest 99.6 3.3E-14 7.1E-19 129.5 14.1 156 195-405 3-183 (184)
91 PRK11131 ATP-dependent RNA hel 99.6 1.9E-14 4.1E-19 161.9 14.4 151 204-415 82-238 (1294)
92 PRK12904 preprotein translocas 99.6 2E-14 4.3E-19 155.5 13.7 132 191-352 78-214 (830)
93 KOG0351 ATP-dependent DNA heli 99.5 1E-13 2.2E-18 152.6 13.9 172 187-415 256-443 (941)
94 PRK09694 helicase Cas3; Provis 99.5 1.3E-13 2.8E-18 151.9 14.3 165 194-406 285-482 (878)
95 PRK13107 preprotein translocas 99.5 2.2E-13 4.8E-18 147.3 12.2 133 191-352 79-215 (908)
96 TIGR00603 rad25 DNA repair hel 99.5 3.1E-13 6.7E-18 145.3 12.7 151 195-405 255-412 (732)
97 KOG0949 Predicted helicase, DE 99.5 2.5E-13 5.5E-18 144.4 10.9 171 195-415 511-682 (1330)
98 TIGR01967 DEAH_box_HrpA ATP-de 99.4 8.1E-13 1.7E-17 149.4 13.0 168 191-415 60-231 (1283)
99 TIGR01407 dinG_rel DnaQ family 99.4 3.6E-12 7.8E-17 142.7 17.7 97 181-301 232-334 (850)
100 KOG0926 DEAH-box RNA helicase 99.4 4.6E-13 1E-17 139.9 9.6 156 204-411 264-430 (1172)
101 COG1061 SSL2 DNA or RNA helica 99.4 1E-12 2.3E-17 136.4 11.7 121 195-354 36-161 (442)
102 PRK07246 bifunctional ATP-depe 99.4 4.3E-12 9.2E-17 140.7 15.9 137 188-353 239-450 (820)
103 PRK11448 hsdR type I restricti 99.4 3.2E-12 7E-17 144.8 14.4 134 195-351 413-552 (1123)
104 KOG0950 DNA polymerase theta/e 99.4 1E-12 2.2E-17 140.4 8.7 187 184-417 212-400 (1008)
105 COG1200 RecG RecG-like helicas 99.4 1E-11 2.2E-16 130.0 15.9 142 179-352 246-397 (677)
106 KOG0353 ATP-dependent DNA heli 99.3 1.4E-11 3.1E-16 119.3 14.0 173 178-407 76-263 (695)
107 TIGR03117 cas_csf4 CRISPR-asso 99.3 1.8E-11 4E-16 130.4 15.0 73 207-300 12-87 (636)
108 TIGR00348 hsdR type I site-spe 99.3 4.8E-11 1E-15 130.0 13.8 154 196-405 239-403 (667)
109 COG1643 HrpA HrpA-like helicas 99.2 7.2E-11 1.6E-15 128.8 13.4 158 201-416 56-216 (845)
110 COG1197 Mfd Transcription-repa 99.2 1E-09 2.3E-14 121.1 18.9 165 181-406 580-754 (1139)
111 COG1198 PriA Primosomal protei 99.2 3.3E-10 7.2E-15 122.0 14.1 185 195-452 198-397 (730)
112 PRK13103 secA preprotein trans 99.1 4.8E-10 1E-14 121.9 13.5 133 191-352 79-215 (913)
113 PLN03142 Probable chromatin-re 99.1 5.1E-09 1.1E-13 117.2 21.2 144 195-368 169-318 (1033)
114 KOG0920 ATP-dependent RNA heli 99.1 2.5E-09 5.4E-14 116.7 17.8 186 197-438 175-362 (924)
115 PF07652 Flavi_DEAD: Flaviviru 99.1 4E-10 8.7E-15 97.1 9.1 138 210-408 3-140 (148)
116 smart00489 DEXDc3 DEAD-like he 99.1 1.1E-09 2.4E-14 107.5 13.6 77 191-285 5-84 (289)
117 smart00488 DEXDc2 DEAD-like he 99.1 1.1E-09 2.4E-14 107.5 13.6 77 191-285 5-84 (289)
118 PRK08074 bifunctional ATP-depe 99.1 2E-09 4.2E-14 121.6 16.0 87 191-301 254-347 (928)
119 PF00176 SNF2_N: SNF2 family N 99.1 5.3E-10 1.2E-14 110.0 10.0 161 199-405 1-173 (299)
120 PRK12906 secA preprotein trans 99.0 1.2E-09 2.5E-14 118.4 12.2 133 191-352 77-213 (796)
121 COG4098 comFA Superfamily II D 99.0 5E-09 1.1E-13 101.1 15.0 153 195-415 97-252 (441)
122 COG1110 Reverse gyrase [DNA re 99.0 4.9E-09 1.1E-13 113.4 16.6 143 191-367 79-229 (1187)
123 COG1203 CRISPR-associated heli 99.0 1.1E-09 2.3E-14 120.8 11.1 170 195-406 195-382 (733)
124 PRK12326 preprotein translocas 99.0 3.8E-09 8.3E-14 112.4 13.6 133 191-352 75-211 (764)
125 KOG0951 RNA helicase BRR2, DEA 99.0 1.4E-10 3E-15 126.7 2.6 166 193-412 1141-1307(1674)
126 KOG0922 DEAH-box RNA helicase 99.0 1.7E-09 3.6E-14 112.6 10.0 158 201-416 57-216 (674)
127 PRK12902 secA preprotein trans 98.9 6.8E-09 1.5E-13 112.5 13.1 132 191-352 82-218 (939)
128 PF07517 SecA_DEAD: SecA DEAD- 98.9 3.5E-08 7.6E-13 94.9 15.7 133 191-352 74-210 (266)
129 COG4096 HsdR Type I site-speci 98.9 7.1E-09 1.5E-13 110.4 10.9 140 195-368 165-310 (875)
130 CHL00122 secA preprotein trans 98.9 1.1E-08 2.4E-13 110.9 11.3 132 191-352 73-209 (870)
131 KOG0923 mRNA splicing factor A 98.9 7E-09 1.5E-13 107.3 8.8 161 197-415 267-430 (902)
132 PRK04914 ATP-dependent helicas 98.8 1.4E-08 2.9E-13 113.4 10.9 131 195-352 152-285 (956)
133 PRK11747 dinG ATP-dependent DN 98.8 4.5E-08 9.8E-13 107.3 14.4 65 192-279 23-95 (697)
134 KOG1002 Nucleotide excision re 98.7 5.8E-08 1.3E-12 97.6 11.1 132 195-354 184-331 (791)
135 KOG0924 mRNA splicing factor A 98.7 5.5E-08 1.2E-12 101.0 10.9 160 199-415 360-520 (1042)
136 KOG0952 DNA/RNA helicase MER3/ 98.7 7.4E-10 1.6E-14 119.6 -3.0 183 193-418 925-1107(1230)
137 KOG0925 mRNA splicing factor A 98.7 7.7E-08 1.7E-12 96.6 10.9 187 172-416 24-212 (699)
138 KOG0385 Chromatin remodeling c 98.6 4.9E-07 1.1E-11 95.4 13.6 144 195-368 167-316 (971)
139 COG1199 DinG Rad3-related DNA 98.6 1.6E-07 3.5E-12 103.0 10.1 73 191-285 11-86 (654)
140 TIGR00604 rad3 DNA repair heli 98.6 3.1E-07 6.8E-12 101.3 11.3 75 191-285 6-83 (705)
141 PRK12903 secA preprotein trans 98.6 5.1E-07 1.1E-11 97.9 12.4 133 191-352 75-211 (925)
142 KOG1123 RNA polymerase II tran 98.5 1.3E-07 2.9E-12 95.2 5.9 141 194-366 301-448 (776)
143 TIGR02562 cas3_yersinia CRISPR 98.5 7E-07 1.5E-11 98.6 11.4 166 195-406 408-636 (1110)
144 PRK14873 primosome assembly pr 98.5 1E-06 2.2E-11 95.6 12.3 138 219-418 168-315 (665)
145 PRK15483 type III restriction- 98.4 3.2E-06 7E-11 93.6 15.1 120 212-352 60-214 (986)
146 KOG0387 Transcription-coupled 98.3 6.2E-06 1.3E-10 87.7 11.9 152 178-367 196-363 (923)
147 KOG0390 DNA repair protein, SN 98.2 2.3E-05 4.9E-10 84.9 15.0 162 195-405 238-415 (776)
148 COG0610 Type I site-specific r 98.2 1.8E-05 3.9E-10 89.6 14.9 141 212-406 274-415 (962)
149 KOG0391 SNF2 family DNA-depend 98.2 6.9E-06 1.5E-10 90.0 10.8 141 195-364 615-761 (1958)
150 PRK12900 secA preprotein trans 98.2 3.4E-06 7.4E-11 92.8 8.5 130 195-352 138-271 (1025)
151 PF13086 AAA_11: AAA domain; P 98.2 4.4E-06 9.5E-11 78.7 8.3 73 196-284 2-75 (236)
152 KOG0389 SNF2 family DNA-depend 98.2 6.1E-06 1.3E-10 87.6 8.9 143 195-363 399-550 (941)
153 KOG0392 SNF2 family DNA-depend 98.1 1.3E-05 2.7E-10 88.7 10.0 150 195-368 975-1127(1549)
154 COG4889 Predicted helicase [Ge 98.1 1.7E-05 3.6E-10 85.2 10.2 139 184-351 150-316 (1518)
155 PRK12901 secA preprotein trans 98.1 8.6E-06 1.9E-10 89.9 8.0 130 195-352 169-303 (1112)
156 KOG1000 Chromatin remodeling p 98.0 3.6E-05 7.8E-10 78.0 10.7 155 193-406 196-350 (689)
157 PF13872 AAA_34: P-loop contai 98.0 8.6E-05 1.9E-09 72.1 12.7 173 176-406 24-222 (303)
158 KOG4439 RNA polymerase II tran 98.0 1.5E-05 3.2E-10 83.8 7.7 143 195-353 325-477 (901)
159 KOG1132 Helicase of the DEAD s 98.0 4.8E-05 1E-09 82.1 11.7 93 195-287 21-135 (945)
160 KOG1803 DNA helicase [Replicat 98.0 1.6E-05 3.4E-10 82.7 7.5 66 195-283 185-250 (649)
161 PF13604 AAA_30: AAA domain; P 98.0 5E-05 1.1E-09 70.4 10.3 64 195-281 1-65 (196)
162 PF02562 PhoH: PhoH-like prote 97.9 3.3E-05 7.2E-10 71.6 7.1 188 194-460 3-197 (205)
163 KOG1802 RNA helicase nonsense 97.8 0.00011 2.4E-09 76.9 10.4 85 187-298 402-486 (935)
164 KOG0384 Chromodomain-helicase 97.7 0.00024 5.2E-09 79.1 12.0 142 194-368 369-524 (1373)
165 TIGR00376 DNA helicase, putati 97.7 0.00035 7.6E-09 76.0 12.4 69 194-285 156-224 (637)
166 KOG0388 SNF2 family DNA-depend 97.7 0.00012 2.6E-09 77.1 7.7 142 195-365 567-720 (1185)
167 PF09848 DUF2075: Uncharacteri 97.6 0.00021 4.5E-09 72.5 8.8 108 213-366 3-117 (352)
168 PRK10536 hypothetical protein; 97.6 0.0017 3.6E-08 62.2 14.3 46 191-237 55-100 (262)
169 PF02399 Herpes_ori_bp: Origin 97.6 0.00043 9.2E-09 75.2 11.1 145 212-415 50-202 (824)
170 PF13245 AAA_19: Part of AAA d 97.6 0.00044 9.5E-09 53.7 7.9 61 203-282 2-62 (76)
171 TIGR01447 recD exodeoxyribonuc 97.5 0.0013 2.9E-08 70.8 14.1 135 197-368 147-284 (586)
172 PRK10875 recD exonuclease V su 97.5 0.0012 2.6E-08 71.3 13.7 134 197-368 154-290 (615)
173 PF12340 DUF3638: Protein of u 97.5 0.0014 3E-08 61.5 12.1 154 175-353 5-186 (229)
174 PF13401 AAA_22: AAA domain; P 97.4 0.0014 2.9E-08 56.0 10.4 21 210-230 3-23 (131)
175 TIGR01448 recD_rel helicase, p 97.4 0.0018 4E-08 71.5 13.7 67 191-280 320-386 (720)
176 PF14617 CMS1: U3-containing 9 97.4 0.00041 8.8E-09 66.2 7.2 87 259-349 123-211 (252)
177 COG3587 Restriction endonuclea 97.3 0.00093 2E-08 72.2 9.6 120 211-353 74-219 (985)
178 KOG4150 Predicted ATP-dependen 97.3 9E-05 2E-09 76.3 1.4 188 190-415 281-472 (1034)
179 PF00580 UvrD-helicase: UvrD/R 97.2 0.0021 4.5E-08 63.3 10.5 104 196-327 1-104 (315)
180 KOG1805 DNA replication helica 97.2 0.0014 3.1E-08 71.7 9.2 137 178-352 656-809 (1100)
181 PF05970 PIF1: PIF1-like helic 97.1 0.001 2.2E-08 67.7 7.0 124 196-370 2-132 (364)
182 COG0653 SecA Preprotein transl 97.1 0.002 4.4E-08 70.4 9.0 133 191-352 77-213 (822)
183 KOG0921 Dosage compensation co 97.0 0.0012 2.7E-08 71.4 6.7 113 208-350 390-504 (1282)
184 PRK12723 flagellar biosynthesi 97.0 0.008 1.7E-07 61.4 12.2 20 211-230 174-193 (388)
185 PRK13889 conjugal transfer rel 97.0 0.012 2.5E-07 66.9 14.3 65 191-279 343-407 (988)
186 TIGR02768 TraA_Ti Ti-type conj 96.9 0.018 3.9E-07 64.1 14.8 75 181-279 339-413 (744)
187 PRK08181 transposase; Validate 96.9 0.0063 1.4E-07 59.1 9.8 23 208-230 103-125 (269)
188 KOG1015 Transcription regulato 96.8 0.021 4.6E-07 62.6 14.0 133 213-367 698-847 (1567)
189 PRK14722 flhF flagellar biosyn 96.8 0.0063 1.4E-07 61.7 9.1 26 210-235 136-161 (374)
190 PRK06526 transposase; Provisio 96.7 0.0039 8.4E-08 60.1 6.6 24 209-232 96-119 (254)
191 COG3421 Uncharacterized protei 96.6 0.0034 7.5E-08 65.5 6.2 43 310-352 79-125 (812)
192 COG0553 HepA Superfamily II DN 96.6 0.015 3.2E-07 65.9 12.0 138 194-354 337-487 (866)
193 PRK04296 thymidine kinase; Pro 96.6 0.0036 7.8E-08 57.6 5.8 21 211-231 2-22 (190)
194 PRK13826 Dtr system oriT relax 96.6 0.046 1E-06 62.6 15.3 76 180-279 367-442 (1102)
195 KOG0386 Chromatin remodeling c 96.5 0.0028 6E-08 69.7 5.0 128 195-352 394-528 (1157)
196 PRK06893 DNA replication initi 96.5 0.016 3.4E-07 55.1 9.4 31 337-367 89-120 (229)
197 cd01120 RecA-like_NTPases RecA 96.5 0.06 1.3E-06 47.1 12.6 19 214-232 2-20 (165)
198 COG1875 NYN ribonuclease and A 96.4 0.058 1.3E-06 53.7 13.0 50 191-240 224-274 (436)
199 PF03354 Terminase_1: Phage Te 96.4 0.01 2.2E-07 62.7 8.3 135 198-360 1-144 (477)
200 PRK05642 DNA replication initi 96.3 0.012 2.6E-07 56.1 7.4 32 337-368 95-127 (234)
201 TIGR01075 uvrD DNA helicase II 96.3 0.018 3.9E-07 64.0 9.7 71 194-286 3-73 (715)
202 KOG1131 RNA polymerase II tran 96.3 0.037 8E-07 57.2 10.9 45 192-236 13-60 (755)
203 cd00009 AAA The AAA+ (ATPases 96.3 0.064 1.4E-06 45.6 11.3 17 211-227 19-35 (151)
204 PRK11889 flhF flagellar biosyn 96.2 0.035 7.6E-07 56.5 10.5 21 212-232 242-262 (436)
205 COG0556 UvrB Helicase subunit 96.2 0.011 2.4E-07 61.2 6.9 68 195-288 12-83 (663)
206 PRK11054 helD DNA helicase IV; 96.2 0.022 4.8E-07 62.6 9.8 78 194-293 195-272 (684)
207 PF05127 Helicase_RecD: Helica 96.2 0.0031 6.7E-08 57.1 2.4 111 215-364 1-111 (177)
208 KOG0953 Mitochondrial RNA heli 96.1 0.0059 1.3E-07 63.3 4.5 102 211-356 191-292 (700)
209 PRK14974 cell division protein 96.1 0.053 1.2E-06 54.4 11.1 45 338-406 221-266 (336)
210 PF00308 Bac_DnaA: Bacterial d 96.1 0.062 1.3E-06 50.6 10.9 32 337-368 95-127 (219)
211 PRK10919 ATP-dependent DNA hel 96.1 0.016 3.4E-07 63.9 7.8 71 195-287 2-72 (672)
212 PRK00149 dnaA chromosomal repl 96.0 0.032 7E-07 58.5 9.7 32 337-368 209-241 (450)
213 KOG0298 DEAD box-containing he 96.0 0.014 3E-07 65.9 6.7 150 210-368 373-539 (1394)
214 PRK07952 DNA replication prote 95.9 0.07 1.5E-06 51.1 10.4 24 212-236 100-123 (244)
215 PTZ00112 origin recognition co 95.9 0.2 4.3E-06 55.7 14.8 28 338-366 868-895 (1164)
216 cd01124 KaiC KaiC is a circadi 95.8 0.089 1.9E-06 47.7 10.6 48 214-285 2-49 (187)
217 COG1419 FlhF Flagellar GTP-bin 95.8 0.075 1.6E-06 53.9 10.7 20 211-230 203-222 (407)
218 PRK14087 dnaA chromosomal repl 95.8 0.098 2.1E-06 54.8 12.1 32 337-368 204-236 (450)
219 TIGR01074 rep ATP-dependent DN 95.8 0.027 5.8E-07 62.1 8.2 70 196-287 2-71 (664)
220 PHA03368 DNA packaging termina 95.8 0.14 3.1E-06 55.1 13.0 146 211-417 254-405 (738)
221 TIGR00631 uvrb excinuclease AB 95.8 0.11 2.3E-06 57.0 12.6 67 195-287 9-79 (655)
222 PRK08727 hypothetical protein; 95.7 0.044 9.5E-07 52.1 8.4 18 212-229 42-59 (233)
223 PF05621 TniB: Bacterial TniB 95.7 0.044 9.6E-07 53.6 8.4 58 212-285 62-119 (302)
224 PRK13894 conjugal transfer ATP 95.7 0.035 7.5E-07 55.4 7.9 67 185-274 124-190 (319)
225 PRK13833 conjugal transfer pro 95.7 0.042 9.2E-07 54.7 8.3 66 187-275 122-187 (323)
226 PRK05703 flhF flagellar biosyn 95.7 0.11 2.4E-06 54.0 11.7 22 210-231 220-241 (424)
227 PRK08084 DNA replication initi 95.6 0.071 1.5E-06 50.8 9.3 18 211-228 45-62 (235)
228 TIGR00362 DnaA chromosomal rep 95.5 0.059 1.3E-06 55.7 9.1 25 211-236 136-160 (405)
229 smart00382 AAA ATPases associa 95.5 0.034 7.3E-07 46.9 6.2 19 211-229 2-20 (148)
230 KOG0989 Replication factor C, 95.5 0.055 1.2E-06 52.7 8.0 33 335-368 125-157 (346)
231 PHA02533 17 large terminase pr 95.5 0.12 2.6E-06 55.2 11.4 72 195-288 59-130 (534)
232 PRK11773 uvrD DNA-dependent he 95.5 0.037 8.1E-07 61.6 7.9 71 195-287 9-79 (721)
233 PRK12377 putative replication 95.5 0.12 2.6E-06 49.7 10.3 18 211-228 101-118 (248)
234 TIGR02782 TrbB_P P-type conjug 95.5 0.069 1.5E-06 52.8 8.9 68 185-275 108-175 (299)
235 COG1474 CDC6 Cdc6-related prot 95.3 0.33 7.1E-06 49.4 13.3 29 338-367 122-150 (366)
236 PRK06921 hypothetical protein; 95.3 0.077 1.7E-06 51.5 8.5 26 210-236 116-141 (266)
237 COG1484 DnaC DNA replication p 95.3 0.087 1.9E-06 50.8 8.7 50 209-282 103-152 (254)
238 PRK12402 replication factor C 95.3 0.11 2.5E-06 51.8 9.9 23 207-229 30-54 (337)
239 COG1444 Predicted P-loop ATPas 95.2 0.2 4.3E-06 55.0 11.9 138 188-365 207-345 (758)
240 TIGR01547 phage_term_2 phage t 95.2 0.075 1.6E-06 54.7 8.5 120 213-367 3-125 (396)
241 PRK12422 chromosomal replicati 95.2 0.093 2E-06 54.8 9.2 31 337-367 200-231 (445)
242 PRK14088 dnaA chromosomal repl 95.2 0.12 2.7E-06 53.9 10.0 30 339-368 194-224 (440)
243 PRK08903 DnaA regulatory inact 95.1 0.11 2.3E-06 49.0 8.8 19 210-228 41-59 (227)
244 PRK08116 hypothetical protein; 95.1 0.18 3.8E-06 49.1 10.3 25 212-237 115-139 (268)
245 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.078 1.7E-06 49.7 7.4 20 210-229 37-56 (226)
246 PRK05298 excinuclease ABC subu 94.9 0.21 4.5E-06 54.9 11.3 67 195-287 12-82 (652)
247 PRK00411 cdc6 cell division co 94.9 0.23 5.1E-06 50.9 11.2 17 211-227 55-71 (394)
248 cd01122 GP4d_helicase GP4d_hel 94.9 0.34 7.3E-06 46.9 11.7 27 209-235 28-54 (271)
249 PRK12727 flagellar biosynthesi 94.8 0.42 9.2E-06 50.6 12.7 24 209-232 348-371 (559)
250 PRK06731 flhF flagellar biosyn 94.8 0.4 8.7E-06 46.6 11.7 23 210-232 74-96 (270)
251 PRK09183 transposase/IS protei 94.7 0.18 3.9E-06 48.8 9.3 24 208-231 99-122 (259)
252 TIGR01073 pcrA ATP-dependent D 94.7 0.068 1.5E-06 59.6 7.2 72 194-287 3-74 (726)
253 PRK14086 dnaA chromosomal repl 94.6 0.21 4.6E-06 53.7 10.1 32 337-368 375-407 (617)
254 PRK14960 DNA polymerase III su 94.5 0.13 2.8E-06 55.7 8.2 19 213-231 39-57 (702)
255 PF00448 SRP54: SRP54-type pro 94.5 0.18 4E-06 46.6 8.3 20 213-232 3-22 (196)
256 PRK11331 5-methylcytosine-spec 94.5 0.11 2.3E-06 54.0 7.2 33 196-229 180-212 (459)
257 TIGR02760 TraI_TIGR conjugativ 94.4 0.45 9.8E-06 58.5 13.6 65 195-282 429-494 (1960)
258 TIGR03015 pepcterm_ATPase puta 94.4 0.18 3.8E-06 48.7 8.3 35 195-229 23-61 (269)
259 PRK14723 flhF flagellar biosyn 94.3 0.16 3.6E-06 56.0 8.7 22 211-232 185-206 (767)
260 PF06745 KaiC: KaiC; InterPro 94.3 0.23 5E-06 46.8 8.8 53 210-285 18-70 (226)
261 TIGR02881 spore_V_K stage V sp 94.2 0.23 5E-06 48.0 8.8 19 211-229 42-60 (261)
262 PRK06835 DNA replication prote 94.2 0.2 4.4E-06 50.2 8.5 19 210-228 182-200 (329)
263 PRK08691 DNA polymerase III su 94.2 0.17 3.8E-06 55.1 8.4 19 213-231 40-58 (709)
264 COG0593 DnaA ATPase involved i 94.1 0.47 1E-05 48.6 11.1 30 339-368 175-205 (408)
265 PHA03333 putative ATPase subun 94.1 1 2.2E-05 49.0 13.8 72 195-288 169-242 (752)
266 TIGR02785 addA_Gpos recombinat 94.1 0.15 3.3E-06 60.0 8.4 125 196-350 2-126 (1232)
267 PRK07003 DNA polymerase III su 94.0 0.23 5E-06 54.5 9.0 28 338-366 118-145 (830)
268 PRK13709 conjugal transfer nic 94.0 0.56 1.2E-05 56.5 12.8 66 195-279 967-1033(1747)
269 PRK14964 DNA polymerase III su 93.9 0.29 6.3E-06 51.6 9.2 20 212-231 36-55 (491)
270 PRK13851 type IV secretion sys 93.8 0.091 2E-06 52.9 5.3 35 201-236 152-186 (344)
271 PHA02544 44 clamp loader, smal 93.8 0.58 1.3E-05 46.4 11.0 28 339-366 100-127 (316)
272 COG3973 Superfamily I DNA and 93.8 0.25 5.5E-06 52.3 8.3 61 210-287 225-285 (747)
273 PRK04195 replication factor C 93.7 0.2 4.3E-06 53.0 7.9 18 211-228 39-56 (482)
274 PRK06995 flhF flagellar biosyn 93.7 0.35 7.5E-06 50.9 9.4 91 211-324 256-347 (484)
275 PRK07764 DNA polymerase III su 93.7 0.17 3.7E-06 56.7 7.5 20 213-232 39-58 (824)
276 PRK05707 DNA polymerase III su 93.7 0.17 3.7E-06 50.7 6.8 35 195-229 3-40 (328)
277 PRK14712 conjugal transfer nic 93.6 0.62 1.3E-05 55.5 12.2 64 195-279 835-901 (1623)
278 PF00004 AAA: ATPase family as 93.6 0.22 4.7E-06 42.0 6.5 16 340-355 59-74 (132)
279 PRK12726 flagellar biosynthesi 93.6 0.39 8.5E-06 48.8 9.1 23 210-232 205-227 (407)
280 TIGR00580 mfd transcription-re 93.5 0.77 1.7E-05 52.4 12.3 79 262-351 660-742 (926)
281 PF07728 AAA_5: AAA domain (dy 93.4 0.018 3.8E-07 49.8 -0.6 15 213-227 1-15 (139)
282 COG2256 MGS1 ATPase related to 93.4 0.62 1.3E-05 47.2 10.0 27 204-230 39-67 (436)
283 PRK10689 transcription-repair 93.4 0.81 1.8E-05 53.4 12.5 92 262-368 809-904 (1147)
284 PRK08533 flagellar accessory p 93.3 0.59 1.3E-05 44.3 9.7 25 209-233 22-46 (230)
285 cd01130 VirB11-like_ATPase Typ 93.3 0.16 3.6E-06 46.3 5.7 34 195-228 9-42 (186)
286 PRK14956 DNA polymerase III su 93.3 0.24 5.3E-06 51.8 7.4 19 213-231 42-60 (484)
287 COG4962 CpaF Flp pilus assembl 93.3 0.15 3.2E-06 50.7 5.5 37 191-227 153-189 (355)
288 PRK08939 primosomal protein Dn 93.3 0.27 5.9E-06 48.8 7.4 19 211-229 156-174 (306)
289 TIGR02928 orc1/cdc6 family rep 93.2 0.76 1.6E-05 46.5 10.9 24 212-236 41-64 (365)
290 PF13173 AAA_14: AAA domain 93.2 0.97 2.1E-05 38.4 9.9 27 339-367 61-87 (128)
291 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.34 7.4E-06 46.1 7.8 52 210-285 20-71 (237)
292 TIGR03499 FlhF flagellar biosy 93.0 0.24 5.1E-06 48.6 6.6 22 211-232 194-215 (282)
293 PRK14958 DNA polymerase III su 93.0 0.24 5.1E-06 52.8 7.0 18 213-230 40-57 (509)
294 PRK14959 DNA polymerase III su 93.0 0.28 6E-06 53.1 7.5 21 212-232 39-59 (624)
295 KOG0344 ATP-dependent RNA heli 93.0 1.4 3E-05 46.5 12.2 96 220-348 366-465 (593)
296 COG2805 PilT Tfp pilus assembl 92.8 0.41 8.9E-06 46.7 7.6 52 168-239 101-152 (353)
297 PRK13900 type IV secretion sys 92.8 0.2 4.4E-06 50.3 5.8 34 202-236 151-184 (332)
298 PRK12323 DNA polymerase III su 92.7 0.39 8.5E-06 52.0 8.0 18 213-230 40-57 (700)
299 COG0630 VirB11 Type IV secreto 92.6 0.19 4.1E-06 50.0 5.3 43 193-236 125-167 (312)
300 TIGR02760 TraI_TIGR conjugativ 92.6 0.88 1.9E-05 56.0 11.9 63 195-279 1019-1085(1960)
301 PLN03025 replication factor C 92.6 1.3 2.8E-05 44.2 11.3 18 212-229 35-52 (319)
302 PRK00771 signal recognition pa 92.5 1.1 2.3E-05 46.8 10.9 21 211-231 95-115 (437)
303 PRK04537 ATP-dependent RNA hel 92.4 0.55 1.2E-05 50.8 8.9 73 262-347 257-333 (572)
304 PRK07994 DNA polymerase III su 92.4 0.71 1.5E-05 50.4 9.6 18 214-231 41-58 (647)
305 PRK14721 flhF flagellar biosyn 92.3 0.5 1.1E-05 48.9 8.0 23 210-232 190-212 (420)
306 TIGR02880 cbbX_cfxQ probable R 92.2 1.1 2.3E-05 44.0 10.0 19 211-229 58-76 (284)
307 PRK11823 DNA repair protein Ra 92.2 0.76 1.7E-05 48.1 9.4 52 210-285 79-130 (446)
308 PRK13342 recombination factor 92.2 1.1 2.5E-05 46.3 10.7 18 212-229 37-54 (413)
309 PRK09111 DNA polymerase III su 92.2 0.52 1.1E-05 51.1 8.3 20 213-232 48-67 (598)
310 PRK14949 DNA polymerase III su 92.1 0.35 7.6E-06 54.1 7.0 17 214-230 41-57 (944)
311 CHL00181 cbbX CbbX; Provisiona 92.1 1.3 2.7E-05 43.6 10.3 20 211-230 59-78 (287)
312 KOG1001 Helicase-like transcri 92.1 0.38 8.1E-06 52.7 7.1 113 214-352 155-267 (674)
313 TIGR00064 ftsY signal recognit 92.0 0.96 2.1E-05 44.1 9.4 22 211-232 72-93 (272)
314 TIGR03819 heli_sec_ATPase heli 92.0 0.39 8.5E-06 48.4 6.8 41 185-227 154-194 (340)
315 cd01126 TraG_VirD4 The TraG/Tr 92.0 0.15 3.2E-06 52.3 3.8 47 213-284 1-47 (384)
316 COG1435 Tdk Thymidine kinase [ 92.0 0.63 1.4E-05 42.6 7.4 51 313-368 60-110 (201)
317 PRK06645 DNA polymerase III su 91.9 0.41 8.9E-06 50.8 7.1 20 212-231 44-63 (507)
318 KOG0732 AAA+-type ATPase conta 91.9 0.3 6.5E-06 55.2 6.2 54 173-228 262-316 (1080)
319 PRK14961 DNA polymerase III su 91.9 0.43 9.4E-06 48.5 7.1 18 213-230 40-57 (363)
320 PRK14955 DNA polymerase III su 91.9 0.82 1.8E-05 47.1 9.2 19 213-231 40-58 (397)
321 TIGR00596 rad1 DNA repair prot 91.9 0.73 1.6E-05 51.6 9.3 68 312-406 7-74 (814)
322 PRK12724 flagellar biosynthesi 91.9 1.2 2.5E-05 46.1 10.0 23 212-234 224-246 (432)
323 PRK04837 ATP-dependent RNA hel 91.8 0.56 1.2E-05 48.7 8.0 72 262-346 255-330 (423)
324 PF05729 NACHT: NACHT domain 91.8 1.7 3.7E-05 37.9 10.1 23 213-236 2-24 (166)
325 PF01695 IstB_IS21: IstB-like 91.8 0.29 6.4E-06 44.5 5.1 25 208-232 44-68 (178)
326 PRK13341 recombination factor 91.8 1.2 2.6E-05 49.5 10.7 18 212-229 53-70 (725)
327 KOG1133 Helicase of the DEAD s 91.8 0.37 8E-06 51.7 6.4 45 195-239 15-62 (821)
328 PF05876 Terminase_GpA: Phage 91.7 0.14 3E-06 55.1 3.4 72 195-288 16-89 (557)
329 PRK11192 ATP-dependent RNA hel 91.7 0.94 2E-05 47.1 9.5 70 262-344 245-318 (434)
330 PRK09112 DNA polymerase III su 91.7 0.89 1.9E-05 46.0 8.9 31 206-237 37-70 (351)
331 TIGR01650 PD_CobS cobaltochela 91.6 0.86 1.9E-05 45.4 8.5 22 207-228 60-81 (327)
332 TIGR00631 uvrb excinuclease AB 91.6 1.7 3.7E-05 47.8 11.6 76 262-350 442-521 (655)
333 PF05496 RuvB_N: Holliday junc 91.5 0.39 8.4E-06 45.2 5.6 16 213-228 52-67 (233)
334 TIGR00959 ffh signal recogniti 91.5 1 2.2E-05 46.8 9.3 20 213-232 101-120 (428)
335 KOG0741 AAA+-type ATPase [Post 91.5 2.1 4.5E-05 45.0 11.2 55 338-414 597-657 (744)
336 PTZ00293 thymidine kinase; Pro 91.4 0.81 1.8E-05 42.7 7.6 19 211-229 4-22 (211)
337 PRK14957 DNA polymerase III su 91.4 0.7 1.5E-05 49.5 8.1 19 213-231 40-58 (546)
338 PHA03372 DNA packaging termina 91.3 4.4 9.5E-05 43.5 13.7 146 212-417 203-352 (668)
339 PF02534 T4SS-DNA_transf: Type 91.3 0.28 6.1E-06 51.6 5.1 49 212-285 45-93 (469)
340 PRK14951 DNA polymerase III su 91.2 0.88 1.9E-05 49.4 8.8 18 214-231 41-58 (618)
341 PTZ00110 helicase; Provisional 91.1 0.9 2E-05 48.9 8.8 72 261-345 376-451 (545)
342 COG2804 PulE Type II secretory 91.1 0.42 9.1E-06 49.9 6.0 45 188-236 237-282 (500)
343 KOG1969 DNA replication checkp 91.1 0.88 1.9E-05 49.4 8.4 15 213-227 328-342 (877)
344 PRK14948 DNA polymerase III su 91.0 0.61 1.3E-05 50.9 7.4 19 212-230 39-57 (620)
345 COG4626 Phage terminase-like p 91.0 2.9 6.3E-05 44.2 12.0 73 195-287 61-143 (546)
346 PRK05896 DNA polymerase III su 91.0 0.73 1.6E-05 49.7 7.8 20 212-231 39-58 (605)
347 PRK06067 flagellar accessory p 91.0 1.8 3.9E-05 40.9 9.9 27 210-236 24-50 (234)
348 TIGR02525 plasmid_TraJ plasmid 91.0 0.37 8E-06 49.1 5.3 27 210-237 148-174 (372)
349 COG0470 HolB ATPase involved i 90.9 0.87 1.9E-05 45.0 8.0 25 211-236 23-48 (325)
350 TIGR00635 ruvB Holliday juncti 90.9 1 2.2E-05 44.4 8.3 18 211-228 30-47 (305)
351 PF00437 T2SE: Type II/IV secr 90.9 0.21 4.5E-06 48.5 3.4 37 199-236 115-151 (270)
352 PRK05563 DNA polymerase III su 90.9 0.3 6.5E-06 52.7 4.8 21 212-232 39-59 (559)
353 PF03237 Terminase_6: Terminas 90.8 1.7 3.6E-05 43.5 10.1 23 215-237 1-23 (384)
354 TIGR03881 KaiC_arch_4 KaiC dom 90.8 1.6 3.4E-05 41.1 9.3 25 210-234 19-43 (229)
355 PRK14965 DNA polymerase III su 90.8 1.4 3.1E-05 47.6 10.0 18 213-230 40-57 (576)
356 PRK14950 DNA polymerase III su 90.7 0.5 1.1E-05 51.3 6.4 20 212-231 39-58 (585)
357 COG0513 SrmB Superfamily II DN 90.6 1.6 3.4E-05 46.7 10.0 55 264-322 275-333 (513)
358 KOG1513 Nuclear helicase MOP-3 90.6 0.21 4.5E-06 54.2 3.2 158 195-405 264-455 (1300)
359 KOG0331 ATP-dependent RNA heli 90.6 0.75 1.6E-05 48.5 7.2 74 259-345 338-415 (519)
360 KOG0991 Replication factor C, 90.6 0.66 1.4E-05 43.7 6.1 30 338-368 112-141 (333)
361 PRK07471 DNA polymerase III su 90.5 1.7 3.7E-05 44.2 9.7 24 213-237 43-66 (365)
362 KOG0744 AAA+-type ATPase [Post 90.5 0.46 1E-05 46.8 5.2 117 208-355 174-325 (423)
363 cd00984 DnaB_C DnaB helicase C 90.5 1.5 3.2E-05 41.6 8.9 27 210-236 12-38 (242)
364 PRK05986 cob(I)alamin adenolsy 90.5 6.8 0.00015 36.0 12.6 27 210-236 21-47 (191)
365 PRK10590 ATP-dependent RNA hel 90.4 1.1 2.4E-05 47.1 8.5 71 262-345 245-319 (456)
366 PRK14952 DNA polymerase III su 90.4 0.52 1.1E-05 50.9 6.1 19 214-232 38-56 (584)
367 PRK08769 DNA polymerase III su 90.3 3 6.6E-05 41.6 11.1 44 193-237 2-51 (319)
368 TIGR01425 SRP54_euk signal rec 90.2 1.4 3.1E-05 45.6 8.9 85 213-323 102-194 (429)
369 KOG0333 U5 snRNP-like RNA heli 90.2 0.86 1.9E-05 47.5 7.1 88 261-369 516-607 (673)
370 COG1197 Mfd Transcription-repa 90.2 1.1 2.4E-05 51.2 8.6 93 262-369 803-899 (1139)
371 PRK11034 clpA ATP-dependent Cl 90.1 1.5 3.2E-05 49.0 9.5 18 211-228 207-224 (758)
372 PRK14969 DNA polymerase III su 90.1 0.61 1.3E-05 49.9 6.3 18 213-230 40-57 (527)
373 TIGR00678 holB DNA polymerase 90.1 3.4 7.3E-05 37.6 10.5 28 337-368 94-121 (188)
374 PF13177 DNA_pol3_delta2: DNA 90.0 1.6 3.6E-05 38.8 8.1 30 338-368 101-130 (162)
375 PRK13897 type IV secretion sys 89.9 0.48 1E-05 51.3 5.4 57 211-296 158-214 (606)
376 PRK00440 rfc replication facto 89.9 3.4 7.5E-05 40.7 11.3 16 213-228 40-55 (319)
377 PRK03992 proteasome-activating 89.8 1.2 2.5E-05 45.9 7.9 18 211-228 165-182 (389)
378 TIGR00614 recQ_fam ATP-depende 89.7 1.4 3E-05 46.5 8.7 72 262-346 226-301 (470)
379 cd01129 PulE-GspE PulE/GspE Th 89.7 0.57 1.2E-05 45.4 5.3 45 188-236 59-104 (264)
380 KOG2228 Origin recognition com 89.7 6.7 0.00014 39.2 12.4 43 322-368 123-166 (408)
381 PRK14963 DNA polymerase III su 89.6 1.5 3.3E-05 46.6 8.8 18 213-230 38-55 (504)
382 KOG1016 Predicted DNA helicase 89.6 3.8 8.3E-05 44.9 11.5 95 211-327 282-389 (1387)
383 TIGR03880 KaiC_arch_3 KaiC dom 89.6 1.5 3.2E-05 41.2 7.9 51 211-285 16-66 (224)
384 PRK06904 replicative DNA helic 89.5 2.5 5.5E-05 44.6 10.3 132 208-367 218-366 (472)
385 PRK11776 ATP-dependent RNA hel 89.4 1.3 2.8E-05 46.5 8.2 71 263-346 243-317 (460)
386 TIGR03878 thermo_KaiC_2 KaiC d 89.4 2 4.4E-05 41.5 8.9 25 210-234 35-59 (259)
387 PF14516 AAA_35: AAA-like doma 89.3 6.2 0.00013 39.6 12.6 39 197-236 17-55 (331)
388 PRK10436 hypothetical protein; 89.3 0.73 1.6E-05 48.4 6.0 45 188-236 197-242 (462)
389 COG1074 RecB ATP-dependent exo 89.2 0.69 1.5E-05 54.2 6.4 63 206-286 11-73 (1139)
390 PF01637 Arch_ATPase: Archaeal 89.2 0.72 1.6E-05 42.9 5.5 17 211-227 20-36 (234)
391 PF12846 AAA_10: AAA-like doma 89.2 1.1 2.4E-05 43.5 7.1 42 212-276 2-43 (304)
392 TIGR02788 VirB11 P-type DNA tr 89.1 0.56 1.2E-05 46.6 4.8 25 204-228 137-161 (308)
393 COG2909 MalT ATP-dependent tra 89.0 3 6.5E-05 46.2 10.5 42 340-405 130-171 (894)
394 cd01121 Sms Sms (bacterial rad 89.0 2.5 5.4E-05 43.1 9.5 23 210-232 81-103 (372)
395 PRK07133 DNA polymerase III su 88.9 1 2.2E-05 49.6 7.0 19 213-231 42-60 (725)
396 PRK11634 ATP-dependent RNA hel 88.8 1.3 2.7E-05 48.6 7.7 70 263-345 246-319 (629)
397 PF06733 DEAD_2: DEAD_2; Inte 88.8 0.22 4.7E-06 45.0 1.6 48 306-354 113-160 (174)
398 PRK14954 DNA polymerase III su 88.8 1.4 2.9E-05 48.1 7.9 19 213-231 40-58 (620)
399 cd00544 CobU Adenosylcobinamid 88.8 4 8.7E-05 36.7 9.8 45 214-284 2-46 (169)
400 COG0556 UvrB Helicase subunit 88.7 2 4.4E-05 45.0 8.5 89 262-366 446-538 (663)
401 TIGR02538 type_IV_pilB type IV 88.7 0.79 1.7E-05 49.5 6.0 45 188-236 295-340 (564)
402 TIGR02533 type_II_gspE general 88.5 0.7 1.5E-05 48.9 5.4 46 187-236 220-266 (486)
403 PRK08451 DNA polymerase III su 88.5 1.8 3.8E-05 46.3 8.3 29 337-366 115-143 (535)
404 PRK08699 DNA polymerase III su 88.5 2.1 4.5E-05 42.9 8.5 34 197-230 3-40 (325)
405 PRK01297 ATP-dependent RNA hel 88.4 1.9 4.2E-05 45.4 8.7 72 262-346 335-410 (475)
406 KOG3089 Predicted DEAD-box-con 88.4 1.1 2.3E-05 41.6 5.6 33 311-346 195-227 (271)
407 PLN00206 DEAD-box ATP-dependen 88.4 1.7 3.7E-05 46.4 8.3 72 262-345 367-442 (518)
408 PRK00080 ruvB Holliday junctio 88.4 1.1 2.4E-05 44.8 6.5 19 211-229 51-69 (328)
409 cd00561 CobA_CobO_BtuR ATP:cor 88.3 5.8 0.00013 35.3 10.3 32 337-368 93-126 (159)
410 TIGR02012 tigrfam_recA protein 88.3 0.79 1.7E-05 45.7 5.2 26 210-236 54-79 (321)
411 PRK05973 replicative DNA helic 88.2 0.91 2E-05 43.2 5.4 53 209-285 62-114 (237)
412 TIGR02524 dot_icm_DotB Dot/Icm 88.2 0.77 1.7E-05 46.6 5.2 26 210-236 133-158 (358)
413 KOG2028 ATPase related to the 88.1 1.7 3.6E-05 43.6 7.2 61 201-284 150-212 (554)
414 KOG0733 Nuclear AAA ATPase (VC 88.0 4.3 9.3E-05 43.5 10.5 53 172-228 507-562 (802)
415 PF12775 AAA_7: P-loop contain 87.9 0.46 1E-05 46.3 3.3 26 202-227 24-49 (272)
416 TIGR02397 dnaX_nterm DNA polym 87.8 4.6 0.0001 40.6 10.6 16 213-228 38-53 (355)
417 PRK06964 DNA polymerase III su 87.7 1.6 3.5E-05 43.9 7.1 40 196-236 2-45 (342)
418 TIGR03600 phage_DnaB phage rep 87.7 1.5 3.1E-05 45.6 7.1 24 209-233 192-215 (421)
419 PRK08006 replicative DNA helic 87.7 4 8.6E-05 43.1 10.3 132 209-368 222-369 (471)
420 TIGR03345 VI_ClpV1 type VI sec 87.6 1.9 4.2E-05 48.9 8.4 28 339-367 668-695 (852)
421 CHL00176 ftsH cell division pr 87.5 1.8 3.9E-05 47.4 7.8 18 211-228 216-233 (638)
422 PTZ00424 helicase 45; Provisio 87.5 2.1 4.6E-05 43.8 8.1 71 262-345 267-341 (401)
423 KOG0742 AAA+-type ATPase [Post 87.5 0.9 2E-05 46.1 5.0 17 211-227 384-400 (630)
424 PF03796 DnaB_C: DnaB-like hel 87.3 2.7 5.9E-05 40.4 8.3 130 210-367 18-162 (259)
425 PF03969 AFG1_ATPase: AFG1-lik 87.2 6.1 0.00013 40.2 11.0 30 338-368 126-155 (362)
426 PRK06647 DNA polymerase III su 87.1 2.5 5.5E-05 45.5 8.6 18 213-230 40-57 (563)
427 PRK13850 type IV secretion sys 87.1 0.85 1.8E-05 50.1 5.0 25 211-235 139-163 (670)
428 PRK06321 replicative DNA helic 87.0 1.5 3.2E-05 46.3 6.6 26 210-236 225-250 (472)
429 KOG0741 AAA+-type ATPase [Post 86.9 1.1 2.3E-05 47.1 5.3 54 170-228 213-273 (744)
430 TIGR01389 recQ ATP-dependent D 86.9 2.3 5E-05 46.2 8.4 54 263-320 225-282 (591)
431 PRK05800 cobU adenosylcobinami 86.9 4.1 8.9E-05 36.6 8.6 17 213-229 3-19 (170)
432 PRK14953 DNA polymerase III su 86.8 1.7 3.7E-05 46.0 7.0 17 214-230 41-57 (486)
433 TIGR02639 ClpA ATP-dependent C 86.8 2.3 5E-05 47.5 8.4 26 339-365 553-578 (731)
434 KOG0058 Peptide exporter, ABC 86.7 1.8 3.8E-05 47.1 7.0 32 337-368 620-651 (716)
435 TIGR00763 lon ATP-dependent pr 86.6 2.3 5.1E-05 47.8 8.4 18 211-228 347-364 (775)
436 PRK07004 replicative DNA helic 86.5 3.7 8E-05 43.2 9.3 26 209-235 211-236 (460)
437 TIGR00602 rad24 checkpoint pro 86.5 3.4 7.4E-05 45.1 9.2 49 173-230 81-129 (637)
438 TIGR00643 recG ATP-dependent D 86.5 2.2 4.8E-05 46.8 8.0 92 262-368 448-551 (630)
439 PRK05748 replicative DNA helic 86.4 1.8 4E-05 45.3 7.0 27 209-236 201-227 (448)
440 PRK10416 signal recognition pa 86.4 4.6 9.9E-05 40.3 9.4 19 211-229 114-132 (318)
441 TIGR01420 pilT_fam pilus retra 86.3 2 4.3E-05 43.4 6.9 26 210-236 121-146 (343)
442 TIGR03158 cas3_cyano CRISPR-as 86.2 4 8.7E-05 41.4 9.2 71 262-346 272-342 (357)
443 PRK11057 ATP-dependent DNA hel 86.1 2.6 5.6E-05 46.1 8.2 55 262-320 236-294 (607)
444 COG1219 ClpX ATP-dependent pro 86.1 0.55 1.2E-05 46.2 2.6 19 210-228 96-114 (408)
445 KOG2004 Mitochondrial ATP-depe 86.0 3 6.6E-05 45.4 8.2 62 297-368 471-534 (906)
446 COG2109 BtuR ATP:corrinoid ade 86.0 3.9 8.4E-05 37.3 7.8 27 339-365 122-150 (198)
447 COG1221 PspF Transcriptional r 86.0 6.3 0.00014 40.5 10.3 20 209-228 99-118 (403)
448 PRK13764 ATPase; Provisional 85.9 0.96 2.1E-05 48.9 4.6 29 207-236 253-281 (602)
449 PRK13695 putative NTPase; Prov 85.8 8.8 0.00019 34.3 10.3 17 213-229 2-18 (174)
450 PRK08506 replicative DNA helic 85.6 3.6 7.9E-05 43.4 8.7 115 209-352 190-315 (472)
451 COG0210 UvrD Superfamily I DNA 85.5 2.2 4.7E-05 47.1 7.3 71 195-287 2-72 (655)
452 cd03115 SRP The signal recogni 85.5 7.2 0.00016 34.7 9.6 17 214-230 3-19 (173)
453 PF04665 Pox_A32: Poxvirus A32 85.5 1.4 3.1E-05 42.0 5.0 29 207-236 9-37 (241)
454 PRK09354 recA recombinase A; P 85.3 4.9 0.00011 40.6 9.0 24 211-234 60-83 (349)
455 PRK08840 replicative DNA helic 85.0 3.7 8E-05 43.2 8.4 27 209-236 215-241 (464)
456 CHL00095 clpC Clp protease ATP 85.0 2 4.3E-05 48.7 6.8 26 339-365 611-636 (821)
457 PRK10867 signal recognition pa 84.9 4.7 0.0001 42.0 9.0 20 213-232 102-121 (433)
458 COG3267 ExeA Type II secretory 84.7 7.9 0.00017 37.1 9.5 21 209-229 48-69 (269)
459 TIGR00708 cobA cob(I)alamin ad 84.7 3.7 8E-05 37.1 7.1 31 338-368 96-128 (173)
460 PHA00350 putative assembly pro 84.6 7.3 0.00016 40.0 10.0 23 214-236 4-27 (399)
461 TIGR00665 DnaB replicative DNA 84.6 3 6.4E-05 43.5 7.5 27 209-236 193-219 (434)
462 PRK13822 conjugal transfer cou 84.6 1.4 2.9E-05 48.3 5.1 49 211-284 224-272 (641)
463 TIGR01243 CDC48 AAA family ATP 84.4 2.2 4.8E-05 47.7 6.8 18 211-228 487-504 (733)
464 TIGR02655 circ_KaiC circadian 84.4 7.2 0.00016 41.3 10.4 52 210-285 262-313 (484)
465 TIGR01970 DEAH_box_HrpB ATP-de 84.3 9.2 0.0002 43.2 11.5 71 264-344 211-285 (819)
466 PRK06871 DNA polymerase III su 84.2 2.4 5.2E-05 42.4 6.3 34 197-230 4-43 (325)
467 cd01131 PilT Pilus retraction 84.2 0.91 2E-05 41.9 3.1 22 214-236 4-25 (198)
468 PRK07993 DNA polymerase III su 84.1 2.7 5.8E-05 42.3 6.6 34 196-229 3-42 (334)
469 PRK11034 clpA ATP-dependent Cl 84.1 4.2 9.1E-05 45.5 8.7 17 213-229 490-506 (758)
470 PRK04841 transcriptional regul 84.0 5.9 0.00013 45.2 10.3 28 341-368 123-150 (903)
471 TIGR03346 chaperone_ClpB ATP-d 84.0 5.1 0.00011 45.6 9.6 19 211-229 194-212 (852)
472 TIGR01054 rgy reverse gyrase. 84.0 2.4 5.3E-05 49.7 7.1 74 263-345 327-404 (1171)
473 PF01443 Viral_helicase1: Vira 83.8 0.71 1.5E-05 43.4 2.3 14 214-227 1-14 (234)
474 COG4185 Uncharacterized protei 83.7 0.5 1.1E-05 41.8 1.1 21 214-234 5-25 (187)
475 TIGR01243 CDC48 AAA family ATP 83.6 7.6 0.00017 43.4 10.6 18 210-227 211-228 (733)
476 cd01128 rho_factor Transcripti 83.6 6 0.00013 38.0 8.5 17 210-226 15-31 (249)
477 PRK08760 replicative DNA helic 83.5 2.8 6E-05 44.3 6.7 130 209-367 227-371 (476)
478 PRK13880 conjugal transfer cou 83.5 1.4 3E-05 48.3 4.6 24 211-234 175-198 (636)
479 KOG0341 DEAD-box protein abstr 83.4 8.2 0.00018 39.0 9.3 91 260-371 419-513 (610)
480 PRK05298 excinuclease ABC subu 83.0 8.3 0.00018 42.5 10.4 76 262-350 446-525 (652)
481 COG1132 MdlB ABC-type multidru 83.0 4.9 0.00011 43.4 8.7 32 337-368 481-512 (567)
482 KOG2227 Pre-initiation complex 82.9 3.7 8.1E-05 42.6 7.0 18 210-227 174-191 (529)
483 cd00079 HELICc Helicase superf 82.8 8.1 0.00018 32.0 8.3 75 262-349 28-106 (131)
484 cd01393 recA_like RecA is a b 82.8 3.1 6.8E-05 38.8 6.2 25 210-234 18-42 (226)
485 PRK05636 replicative DNA helic 82.8 1.4 3E-05 46.9 4.1 19 211-229 265-283 (505)
486 PRK06305 DNA polymerase III su 82.7 4.2 9.2E-05 42.6 7.7 19 212-230 40-58 (451)
487 TIGR02868 CydC thiol reductant 82.7 3.3 7.2E-05 44.3 7.1 31 337-367 486-516 (529)
488 TIGR00767 rho transcription te 82.5 8.5 0.00018 39.6 9.4 18 210-227 167-184 (415)
489 COG1203 CRISPR-associated heli 82.3 6 0.00013 44.3 9.1 57 260-320 438-502 (733)
490 PRK11664 ATP-dependent RNA hel 81.9 14 0.0003 41.8 11.8 72 263-344 213-288 (812)
491 PRK05595 replicative DNA helic 81.6 3.1 6.7E-05 43.6 6.2 26 210-236 200-225 (444)
492 TIGR03754 conj_TOL_TraD conjug 81.6 4 8.8E-05 44.4 7.1 54 211-287 180-235 (643)
493 PRK13767 ATP-dependent helicas 81.4 5.9 0.00013 45.3 8.8 73 264-345 286-364 (876)
494 PRK10917 ATP-dependent DNA hel 81.3 5.5 0.00012 44.1 8.3 92 262-368 471-574 (681)
495 KOG0330 ATP-dependent RNA heli 81.2 5.1 0.00011 40.5 7.1 68 264-344 302-373 (476)
496 PRK10263 DNA translocase FtsK; 81.1 5.6 0.00012 46.5 8.3 28 211-238 1010-1037(1355)
497 PRK14971 DNA polymerase III su 81.1 2.3 4.9E-05 46.4 5.1 29 336-368 118-146 (614)
498 PF13555 AAA_29: P-loop contai 80.9 1.4 3E-05 32.6 2.3 18 211-228 23-40 (62)
499 PF10412 TrwB_AAD_bind: Type I 80.8 2.4 5.2E-05 43.5 5.0 29 210-239 14-42 (386)
500 KOG1205 Predicted dehydrogenas 80.8 9.4 0.0002 37.3 8.7 120 210-371 11-138 (282)
No 1
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-45 Score=366.56 Aligned_cols=268 Identities=44% Similarity=0.677 Sum_probs=222.5
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhh
Q 012337 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 249 (465)
Q Consensus 170 ~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 249 (465)
..+..|..|+++..++++|..+||..||+||..+||.+++...||+..|.||||||+||.+||++.+....+...
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~----- 252 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ----- 252 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh-----
Confidence 456789999999999999999999999999999999999644899999999999999999999997765432110
Q ss_pred hhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhC
Q 012337 250 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 329 (465)
Q Consensus 250 ~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~ 329 (465)
+...-......|.+||++|||+||.||.++|..++..+++++..++||.....|.+.++..++|+||||||||.+|..
T Consensus 253 --e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e 330 (731)
T KOG0347|consen 253 --ELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEE 330 (731)
T ss_pred --hhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHh
Confidence 000012223344699999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHH
Q 012337 330 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 409 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 409 (465)
++.+...++.+.+|||||||+|++.|+|..+..|+.+|+.. +.+..+||++||||++....
T Consensus 331 ~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~-------------------~~~~qrQTlVFSATlt~~~~ 391 (731)
T KOG0347|consen 331 DNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEE-------------------QKNRQRQTLVFSATLTLVLQ 391 (731)
T ss_pred hhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhh-------------------hcccccceEEEEEEeehhhc
Confidence 77667779999999999999999999999999999999822 12267899999999985543
Q ss_pred HHHHhhhcccccccccCccccHHHHHHHhCccccceEEecCchHhHhhhhhhhccC
Q 012337 410 FRKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTNVSVLANKLEESFIE 465 (465)
Q Consensus 410 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iidl~~~~~~~~~l~e~~~~ 465 (465)
..-........ ........++.|++..||+.++.|||+++.+.++..|.|++|+
T Consensus 392 ~~~~~~~k~~~--k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~ 445 (731)
T KOG0347|consen 392 QPLSSSRKKKD--KEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIE 445 (731)
T ss_pred ChhHHhhhccc--hhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhc
Confidence 32222211111 1122334588999999999999999999999999999999885
No 2
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-43 Score=346.77 Aligned_cols=192 Identities=44% Similarity=0.694 Sum_probs=178.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
..+|.+|+|+..|++++..+||..|||||..+||.++ -|+|++.||.||||||.+|+||+|++++...
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrP----------- 247 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRP----------- 247 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCc-----------
Confidence 4689999999999999999999999999999999997 4999999999999999999999999997543
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
......|||||+|||+||.||+.+.++++.++.+.+++++||.+...|...++..|||+|+|||||.++|.+.
T Consensus 248 ------k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs- 320 (691)
T KOG0338|consen 248 ------KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS- 320 (691)
T ss_pred ------ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC-
Confidence 2344569999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
..+.|++|.+||+||||+||+.+|.+.|..|+..++ +.|||++||||++..
T Consensus 321 -~sf~ldsiEVLvlDEADRMLeegFademnEii~lcp------------------------k~RQTmLFSATMtee 371 (691)
T KOG0338|consen 321 -PSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCP------------------------KNRQTMLFSATMTEE 371 (691)
T ss_pred -CCccccceeEEEechHHHHHHHHHHHHHHHHHHhcc------------------------ccccceeehhhhHHH
Confidence 347799999999999999999999999999999999 889999999999744
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=325.35 Aligned_cols=191 Identities=45% Similarity=0.772 Sum_probs=178.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
.+.+|.+|++++.+++++...||..||+||+++||.++ +|+|||+.|.||||||.+|+|||+++++..+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~p---------- 127 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQEP---------- 127 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcCC----------
Confidence 46889999999999999999999999999999999997 7999999999999999999999999998642
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
..|++|||+||||||.||...+..++..+|++++++.||.+...+...+...++|||||||+|++++.+.
T Consensus 128 ----------~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T 197 (476)
T KOG0330|consen 128 ----------KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT 197 (476)
T ss_pred ----------CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc
Confidence 3489999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
+.+.|..+++||+||||+|+++.|...+.+|+..+| ..+|+++||||++...
T Consensus 198 --kgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip------------------------~erqt~LfsATMt~kv 249 (476)
T KOG0330|consen 198 --KGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP------------------------RERQTFLFSATMTKKV 249 (476)
T ss_pred --cCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC------------------------ccceEEEEEeecchhh
Confidence 457899999999999999999999999999999999 7899999999998543
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-39 Score=328.51 Aligned_cols=193 Identities=40% Similarity=0.639 Sum_probs=178.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 012337 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 253 (465)
Q Consensus 174 ~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 253 (465)
.|++++|++.+..+++..||..|||||.+.||.++ .|+|++..|.||||||++|+||++.|+.....
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l-~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~------------ 158 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIAL-SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQG------------ 158 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceec-cCCceEEEeccCCcchhhhhhHHHHHHHhccc------------
Confidence 79999999999999999999999999999999997 79999999999999999999999999975311
Q ss_pred hhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcc
Q 012337 254 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 333 (465)
Q Consensus 254 ~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~ 333 (465)
......+|++|||+||||||.||...+..++....++++|++||.....|.+.+..+.+|+|||||||.++|..+.
T Consensus 159 --~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~-- 234 (519)
T KOG0331|consen 159 --KLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS-- 234 (519)
T ss_pred --cccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC--
Confidence 2344568999999999999999999999999999999999999999999999999999999999999999997664
Q ss_pred ccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 334 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 334 ~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
..|+++.|||+||||+|++|||...|..|+..++. ..+|+++||||+|..
T Consensus 235 -~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~-----------------------~~rQtlm~saTwp~~ 284 (519)
T KOG0331|consen 235 -LNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR-----------------------PDRQTLMFSATWPKE 284 (519)
T ss_pred -ccccceeEEEeccHHhhhccccHHHHHHHHHhcCC-----------------------CcccEEEEeeeccHH
Confidence 88999999999999999999999999999999952 456999999999854
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-37 Score=326.50 Aligned_cols=188 Identities=44% Similarity=0.739 Sum_probs=172.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
..|.+|+|++.+++++.+.||..|||||.++||.++ .|+|++++|+||||||++|++|+|+++...
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~------------- 94 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKS------------- 94 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhcc-------------
Confidence 679999999999999999999999999999999998 699999999999999999999999997421
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
......+ +|||+|||+||.||++.+..++.+. ++++++++||.+...+...+..+++|||||||||++++..+
T Consensus 95 ----~~~~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~- 168 (513)
T COG0513 95 ----VERKYVS-ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG- 168 (513)
T ss_pred ----cccCCCc-eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-
Confidence 0011112 9999999999999999999999998 79999999999999999999888999999999999999765
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
.+.++.+.+||+||||+|++|||.+.+..|+..++ ..+|+++||||++.
T Consensus 169 --~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p------------------------~~~qtllfSAT~~~ 217 (513)
T COG0513 169 --KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP------------------------PDRQTLLFSATMPD 217 (513)
T ss_pred --CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC------------------------cccEEEEEecCCCH
Confidence 58899999999999999999999999999999998 67999999999986
No 6
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-38 Score=313.94 Aligned_cols=200 Identities=41% Similarity=0.578 Sum_probs=180.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
.+..|.+|+|+..+.++|...+|..+|.||+.+||.+| +|+|||..|.||||||+||++|+|+++++.
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~----------- 134 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRL----------- 134 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHc-----------
Confidence 45679999999999999999999999999999999998 799999999999999999999999999976
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
+..+..|..||||+|||+||.|++..|.+++++..+.++.++||...... ...-++.+|||||||||+.+|...
T Consensus 135 -----kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E-~eRi~~mNILVCTPGRLLQHmde~ 208 (758)
T KOG0343|consen 135 -----KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFE-LERISQMNILVCTPGRLLQHMDEN 208 (758)
T ss_pred -----CCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHH-HHhhhcCCeEEechHHHHHHhhhc
Confidence 56778899999999999999999999999999999999999999996544 334457899999999999999743
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHH
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADF 410 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~ 410 (465)
..+..+++.+||+||||+|++|||...+..|+..|| ..|||++||||-+.+..-
T Consensus 209 --~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP------------------------~~RQTLLFSATqt~svkd 262 (758)
T KOG0343|consen 209 --PNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLP------------------------KKRQTLLFSATQTKSVKD 262 (758)
T ss_pred --CCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCC------------------------hhheeeeeecccchhHHH
Confidence 346688999999999999999999999999999999 889999999999876544
Q ss_pred HHHh
Q 012337 411 RKKL 414 (465)
Q Consensus 411 ~~~l 414 (465)
+.+|
T Consensus 263 LaRL 266 (758)
T KOG0343|consen 263 LARL 266 (758)
T ss_pred HHHh
Confidence 4444
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=299.54 Aligned_cols=193 Identities=38% Similarity=0.585 Sum_probs=175.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
..|.++.|++.+.+++.++||..+|++|+.+||.++ .|+|+++.|.||||||+||+||+++++++.+.
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll-~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~----------- 149 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLL-EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF----------- 149 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccC-CCccceeeeccCCCceeeehhHHHHHHHhccc-----------
Confidence 557888999999999999999999999999999997 69999999999999999999999999987742
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
....+..||||+|||+||.|++.+++++..+. ++.+..++||.+.......+..+++|+|||||||.++|.+..
T Consensus 150 -----~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~ 224 (543)
T KOG0342|consen 150 -----KPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTS 224 (543)
T ss_pred -----CCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCC
Confidence 33467899999999999999999999999888 899999999999888777888899999999999999998754
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
. +....+.++|+||||+|+++||...|.+|+..|| ..+|+++||||.+...
T Consensus 225 ~--f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp------------------------k~rqt~LFSAT~~~kV 275 (543)
T KOG0342|consen 225 G--FLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP------------------------KQRQTLLFSATQPSKV 275 (543)
T ss_pred c--chhhccceeEeecchhhhhcccHHHHHHHHHhcc------------------------ccceeeEeeCCCcHHH
Confidence 2 4456778999999999999999999999999999 7899999999998543
No 8
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=301.44 Aligned_cols=215 Identities=31% Similarity=0.495 Sum_probs=180.2
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~-~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
-..|.+|+|++.+...|.. +++..||.+|.++||.+| +|+|++|.++||||||++|++|++++|.....
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~--------- 204 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEP--------- 204 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhcCc---------
Confidence 3679999999999999976 899999999999999998 69999999999999999999999999976532
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCce-EEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 329 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~-v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~ 329 (465)
..+...|+.+|||+||||||.|+++.+.++.+...+- -+.+.||........+++.+++|||+|||||+++|.+
T Consensus 205 -----ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLkn 279 (708)
T KOG0348|consen 205 -----KIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKN 279 (708)
T ss_pred -----cccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhc
Confidence 3456789999999999999999999999998876544 3678899999888999999999999999999999986
Q ss_pred CCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHH
Q 012337 330 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 409 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 409 (465)
.. .+.++.++|||+||||+|++.||...|..|++.+...+.. .|... --...+|.|++||||+...+
T Consensus 280 T~--~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~---------e~~~~--~lp~q~q~mLlSATLtd~V~ 346 (708)
T KOG0348|consen 280 TK--SIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNA---------ECKDP--KLPHQLQNMLLSATLTDGVN 346 (708)
T ss_pred cc--hheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccch---------hcccc--cccHHHHhHhhhhhhHHHHH
Confidence 53 4668999999999999999999999999999998532211 11000 00124899999999986665
Q ss_pred HHHHh
Q 012337 410 FRKKL 414 (465)
Q Consensus 410 ~~~~l 414 (465)
-+..+
T Consensus 347 rLa~~ 351 (708)
T KOG0348|consen 347 RLADL 351 (708)
T ss_pred HHhhc
Confidence 44443
No 9
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.3e-35 Score=315.00 Aligned_cols=205 Identities=32% Similarity=0.527 Sum_probs=180.6
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhh
Q 012337 167 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 246 (465)
Q Consensus 167 ~~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~ 246 (465)
..|.+..+|.++++++.++++|.+.||..|||+|.++||.++ +|+|+|++||||||||++|+||++.++....
T Consensus 124 ~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l-~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~------ 196 (545)
T PTZ00110 124 NVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIAL-SGRDMIGIAETGSGKTLAFLLPAIVHINAQP------ 196 (545)
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEeCCCChHHHHHHHHHHHHHHhcc------
Confidence 456677899999999999999999999999999999999997 7999999999999999999999999986431
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHH
Q 012337 247 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 326 (465)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~ 326 (465)
......+|++|||+|||+||.|+.+.+..++...++++.+++||.....+...+..+++|||+||++|.++
T Consensus 197 ---------~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~ 267 (545)
T PTZ00110 197 ---------LLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDF 267 (545)
T ss_pred ---------cccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 11123478999999999999999999999998889999999999999888888889999999999999999
Q ss_pred HhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 327 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 327 l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
+..+ ...|+++.+|||||||+|++++|...+..|+..++ ..+|+++||||++.
T Consensus 268 l~~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------~~~q~l~~SAT~p~ 320 (545)
T PTZ00110 268 LESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------PDRQTLMWSATWPK 320 (545)
T ss_pred HHcC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC------------------------CCCeEEEEEeCCCH
Confidence 9654 36689999999999999999999999999998887 67899999999975
Q ss_pred cH-HHHHHh
Q 012337 407 SA-DFRKKL 414 (465)
Q Consensus 407 ~~-~~~~~l 414 (465)
.. .+..++
T Consensus 321 ~v~~l~~~l 329 (545)
T PTZ00110 321 EVQSLARDL 329 (545)
T ss_pred HHHHHHHHH
Confidence 43 334443
No 10
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=291.79 Aligned_cols=196 Identities=37% Similarity=0.609 Sum_probs=169.6
Q ss_pred cccccCCC--CHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 173 DAWNELRL--HPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 173 ~~~~~l~l--~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
..|++|+. +++++.++...||...||+|..+||.++ +++||++.|+||||||+||++|+++.+++...+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll-~~KDVvveavTGSGKTlAFllP~le~i~rr~~~-------- 74 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLL-KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAK-------- 74 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHh-cCCceEEEcCCCCCchhhHHHHHHHHHHhhccC--------
Confidence 45777754 5999999999999999999999999987 799999999999999999999999999765321
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHcc-CCceEEEEecCCCHHHHHHHHh-CCCcEEEeChHHHHHHHh
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-INVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMS 328 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~-~~~~v~~~~gg~~~~~~~~~~~-~~~dIiV~TP~~L~~~l~ 328 (465)
.+ .....+|||+||||||.||.+.+..+..+ .++.+.+++||.+.......++ .++.|+|||||||.+++.
T Consensus 75 ------~~-~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 75 ------TP-PGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred ------CC-ccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHh
Confidence 11 11357999999999999999999998877 5788999999999887766665 578999999999999997
Q ss_pred CCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 329 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
.. ...+++.++++||+||||+|++|||..+++.|+..|| +.|+|=+||||.....
T Consensus 148 ~~-~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LP------------------------KQRRTGLFSATq~~~v 202 (567)
T KOG0345|consen 148 RE-AEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLP------------------------KQRRTGLFSATQTQEV 202 (567)
T ss_pred ch-hhhccccccceEEecchHhHhcccHHHHHHHHHHhcc------------------------cccccccccchhhHHH
Confidence 63 2335567999999999999999999999999999999 7899999999998655
Q ss_pred H
Q 012337 409 D 409 (465)
Q Consensus 409 ~ 409 (465)
+
T Consensus 203 ~ 203 (567)
T KOG0345|consen 203 E 203 (567)
T ss_pred H
Confidence 3
No 11
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-35 Score=282.64 Aligned_cols=192 Identities=46% Similarity=0.690 Sum_probs=176.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
...|+.|||++|+.+.+..+|+..|||+|..|||.+| .|+|+|.||.||||||++|.+|+|+.+-+.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkIL-eGrdcig~AkTGsGKT~AFaLPil~rLsed------------ 72 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKIL-EGRDCIGCAKTGSGKTAAFALPILNRLSED------------ 72 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHh-cccccccccccCCCcchhhhHHHHHhhccC------------
Confidence 4679999999999999999999999999999999998 699999999999999999999999998532
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC-
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG- 330 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~- 330 (465)
..+..+||++|||+||.|+.+.|..+++..++++.+++||++.-.+...+..++||+|+|||+|..++.+.
T Consensus 73 --------P~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~ 144 (442)
T KOG0340|consen 73 --------PYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNL 144 (442)
T ss_pred --------CCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
......+.+++++|+||||+|++.+|-+.+..++..+| ..||+++||||+++..
T Consensus 145 ~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP------------------------~~RQtLlfSATitd~i 198 (442)
T KOG0340|consen 145 GVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLP------------------------KPRQTLLFSATITDTI 198 (442)
T ss_pred ccchhhhhceeeEEecchhhhhccchhhHHhhhhccCC------------------------CccceEEEEeehhhHH
Confidence 22334589999999999999999999999999999999 7799999999997543
No 12
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-36 Score=294.47 Aligned_cols=202 Identities=37% Similarity=0.580 Sum_probs=187.4
Q ss_pred hhhhcccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHh
Q 012337 163 VSEAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREK 242 (465)
Q Consensus 163 ~~~~~~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~ 242 (465)
+....++.+..+|..+++...|+.++...-|..|||||.+++|.++ .|+||+..|.||||||.+|+.|++.|++...
T Consensus 213 v~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~-- 289 (731)
T KOG0339|consen 213 VSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQP-- 289 (731)
T ss_pred eccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchh--
Confidence 3456677889999999999999999999999999999999999997 7999999999999999999999999998654
Q ss_pred hhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHH
Q 012337 243 AGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGR 322 (465)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~ 322 (465)
....+.+|.+||++|||+||.||+.+++++++..+++++++|||.+.++|...|..++.||||||+|
T Consensus 290 -------------eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgR 356 (731)
T KOG0339|consen 290 -------------ELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGR 356 (731)
T ss_pred -------------hhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHH
Confidence 2345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEee
Q 012337 323 LWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 402 (465)
Q Consensus 323 L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 402 (465)
|++++. .+..+++++.+|||||||+|+++||...|..|..++. +.+|+|+|||
T Consensus 357 lid~Vk---mKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir------------------------pdrQtllFsa 409 (731)
T KOG0339|consen 357 LIDMVK---MKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR------------------------PDRQTLLFSA 409 (731)
T ss_pred HHHHHH---hhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC------------------------CcceEEEeec
Confidence 999994 4458899999999999999999999999999999998 8999999999
Q ss_pred eccCc
Q 012337 403 TIALS 407 (465)
Q Consensus 403 Tl~~~ 407 (465)
|++-.
T Consensus 410 Tf~~k 414 (731)
T KOG0339|consen 410 TFKKK 414 (731)
T ss_pred cchHH
Confidence 99743
No 13
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=9.8e-37 Score=292.37 Aligned_cols=245 Identities=31% Similarity=0.516 Sum_probs=205.6
Q ss_pred hhcccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhh
Q 012337 165 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 244 (465)
Q Consensus 165 ~~~~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~ 244 (465)
...+|++..+|.++.++..+++.|++.|+..|||||.+.+|.+| .|+|+|..|-||||||++|.||++...+...-.
T Consensus 162 Gd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvL-sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~-- 238 (610)
T KOG0341|consen 162 GDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMM-- 238 (610)
T ss_pred CCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEe-ecCceeeEEeecCCceEEEeHHHHHHHHHHHhc--
Confidence 45678889999999999999999999999999999999999997 799999999999999999999999888765322
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC------CceEEEEecCCCHHHHHHHHhCCCcEEEe
Q 012337 245 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI------NVRVVPIVGGMSTEKQERLLKARPELVVG 318 (465)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~------~~~v~~~~gg~~~~~~~~~~~~~~dIiV~ 318 (465)
.......+|..|||||+|+||.|.++.+..++..+ .++.+.++||.+...+...++.+.+|+|+
T Consensus 239 ----------lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVA 308 (610)
T KOG0341|consen 239 ----------LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVA 308 (610)
T ss_pred ----------CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEc
Confidence 24556779999999999999999999998887643 47889999999999999999999999999
Q ss_pred ChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEE
Q 012337 319 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTL 398 (465)
Q Consensus 319 TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i 398 (465)
|||||.++|. ++...|.-++||++||||+|+|+||.+.|..||.++. ..|||+
T Consensus 309 TPGRL~DmL~---KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK------------------------~QRQTL 361 (610)
T KOG0341|consen 309 TPGRLMDMLA---KKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFK------------------------GQRQTL 361 (610)
T ss_pred CcchHHHHHH---HhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHh------------------------hhhhee
Confidence 9999999994 4567889999999999999999999999999999997 679999
Q ss_pred EEeeeccCcHHH-HHHhhhcccccccccCccccHHHHHHHhCccccceEEec
Q 012337 399 VFSATIALSADF-RKKLKHGSLKLKQSVNGLNSIETLSERAGMRANVAIVDL 449 (465)
Q Consensus 399 ~~SATl~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iidl 449 (465)
+||||+|.-.++ ++..-...........+..++..+.+.-+++..+.+|.+
T Consensus 362 LFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVyl 413 (610)
T KOG0341|consen 362 LFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYL 413 (610)
T ss_pred eeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhH
Confidence 999999865543 333222222222223466667777777777777666654
No 14
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.8e-35 Score=293.35 Aligned_cols=229 Identities=34% Similarity=0.530 Sum_probs=197.4
Q ss_pred hhcccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhh
Q 012337 165 EAEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG 244 (465)
Q Consensus 165 ~~~~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~ 244 (465)
...+|.++.+|.+.+++..++..+...||..|+|||.++||..+ +++|+|..|.||||||++|++|++..|.......
T Consensus 237 g~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~l-Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~- 314 (673)
T KOG0333|consen 237 GGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGL-QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMA- 314 (673)
T ss_pred CCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchh-ccCCeeeEEeccCCccccchhhHHHHHHcCCCcc-
Confidence 45678899999999999999999999999999999999999886 7999999999999999999999999886543110
Q ss_pred hhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHH
Q 012337 245 KMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 324 (465)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~ 324 (465)
.....-.+|+++|++|||+||+||..+-.++++.++++++.++||.+..++...+..+|+|+|||||+|.
T Consensus 315 ----------~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLi 384 (673)
T KOG0333|consen 315 ----------RLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLI 384 (673)
T ss_pred ----------hhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHH
Confidence 0112346899999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcc-cccchhccccccCCCceEEEEeee
Q 012337 325 ELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSE-QTQTCVTVSSLQRKKRQTLVFSAT 403 (465)
Q Consensus 325 ~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~i~~SAT 403 (465)
+.|.+ ..+.|+++.+||+||||+|+||||...+..|+.+||..+.++.-..+ .-.++..+.+..++++||++||||
T Consensus 385 d~Len---r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftat 461 (673)
T KOG0333|consen 385 DSLEN---RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTAT 461 (673)
T ss_pred HHHHH---HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecC
Confidence 99954 45789999999999999999999999999999999977765422111 233344455556688999999999
Q ss_pred ccCcH
Q 012337 404 IALSA 408 (465)
Q Consensus 404 l~~~~ 408 (465)
+++..
T Consensus 462 m~p~v 466 (673)
T KOG0333|consen 462 MPPAV 466 (673)
T ss_pred CChHH
Confidence 99765
No 15
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.3e-35 Score=300.90 Aligned_cols=196 Identities=31% Similarity=0.565 Sum_probs=173.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
..|.+|+|++.++++|...||..|||+|.++||.++ +|+|++++||||||||++|++|++++++.....
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~---------- 76 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTL-AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP---------- 76 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEECCCCchHHHHHHHHHHHHHHhcccc----------
Confidence 679999999999999999999999999999999997 799999999999999999999999999754211
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 332 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~ 332 (465)
......++++|||+|||+||.|+++.+..++...++++..++||.....+...+..+++||||||++|.+++..+
T Consensus 77 ---~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~-- 151 (423)
T PRK04837 77 ---EDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN-- 151 (423)
T ss_pred ---cccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--
Confidence 011234689999999999999999999999999999999999999988888888888999999999999999654
Q ss_pred cccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 333 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 333 ~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
...++.+.+|||||||+|++++|...+..++..++.. ..+|+++||||++..
T Consensus 152 -~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~----------------------~~~~~~l~SAT~~~~ 203 (423)
T PRK04837 152 -HINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA----------------------NQRLNMLFSATLSYR 203 (423)
T ss_pred -CcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCc----------------------cceeEEEEeccCCHH
Confidence 3678999999999999999999999999999988732 357899999999754
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9.3e-35 Score=307.26 Aligned_cols=206 Identities=36% Similarity=0.572 Sum_probs=179.6
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhh
Q 012337 167 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 246 (465)
Q Consensus 167 ~~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~ 246 (465)
..|.+..+|.+++|++.++++|...||..|||+|.++||.++ +|+|++++||||||||++|++|++.+++..+..
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il-~g~dviv~ApTGSGKTlayllPil~~l~~~~~~---- 189 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCTIRSG---- 189 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEecCCCCccHHHHHHHHHHHHhhccc----
Confidence 456778899999999999999999999999999999999997 799999999999999999999999998643211
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHH
Q 012337 247 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 326 (465)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~ 326 (465)
......+|++|||+|||+||.|+.+.+..+....++++..++||.....+...+..+++||||||++|.++
T Consensus 190 ---------~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~ 260 (518)
T PLN00206 190 ---------HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDL 260 (518)
T ss_pred ---------cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHH
Confidence 11223578999999999999999999999999889999999999998888888888999999999999999
Q ss_pred HhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 327 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 327 l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
+... ...++++.+|||||||+|++++|...+..|+..++ .+|+++||||++.
T Consensus 261 l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-------------------------~~q~l~~SATl~~ 312 (518)
T PLN00206 261 LSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-------------------------QPQVLLFSATVSP 312 (518)
T ss_pred HHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-------------------------CCcEEEEEeeCCH
Confidence 9654 46789999999999999999999999999998774 4699999999986
Q ss_pred cHH-HHHHh
Q 012337 407 SAD-FRKKL 414 (465)
Q Consensus 407 ~~~-~~~~l 414 (465)
... +..++
T Consensus 313 ~v~~l~~~~ 321 (518)
T PLN00206 313 EVEKFASSL 321 (518)
T ss_pred HHHHHHHHh
Confidence 543 34443
No 17
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=279.30 Aligned_cols=245 Identities=32% Similarity=0.555 Sum_probs=214.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
+-..|+++.|...++..+++.||..|+|+|.++||.++ .|+|+++.|..|+|||.+|++|+|+.+
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Leki-------------- 147 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKI-------------- 147 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhc--------------
Confidence 34679999999999999999999999999999999997 799999999999999999999999988
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
++.....+++|++|||+||.|+.+.++.+++++++.+...+||++..+..-++....+++|+||||+++++..+
T Consensus 148 ------d~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg 221 (459)
T KOG0326|consen 148 ------DPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG 221 (459)
T ss_pred ------CccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc
Confidence 33445678999999999999999999999999999999999999998888888899999999999999999654
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH-H
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA-D 409 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~-~ 409 (465)
...++.+.++|+||||.|++..|...+..++..|| +.+|+++||||+|... +
T Consensus 222 ---Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP------------------------~~rQillySATFP~tVk~ 274 (459)
T KOG0326|consen 222 ---VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLP------------------------KERQILLYSATFPLTVKG 274 (459)
T ss_pred ---cccchhceEEEechhhhhhchhhhhHHHHHHHhCC------------------------ccceeeEEecccchhHHH
Confidence 57799999999999999999999999999999999 7899999999999753 5
Q ss_pred HHHHhhh-----------------cccccccccCccccHHHHHHHhCccccceEEecCc-hHhHhhhhhhhc
Q 012337 410 FRKKLKH-----------------GSLKLKQSVNGLNSIETLSERAGMRANVAIVDLTN-VSVLANKLEESF 463 (465)
Q Consensus 410 ~~~~l~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iidl~~-~~~~~~~l~e~~ 463 (465)
|+.+.-. ..+........++.+..|..++.+-+.+.|+..++ .+.+|-+|.|.-
T Consensus 275 Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelG 346 (459)
T KOG0326|consen 275 FMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELG 346 (459)
T ss_pred HHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhcc
Confidence 6554211 12233334557888999999999988888888887 468888888753
No 18
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=297.87 Aligned_cols=209 Identities=36% Similarity=0.560 Sum_probs=183.4
Q ss_pred hcccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhh
Q 012337 166 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 245 (465)
Q Consensus 166 ~~~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~ 245 (465)
...|..+..|.+-.+.+.+..++...+|..|||+|+.+||.+. .|+|+++||+||||||.+|++|++.++++.+...
T Consensus 67 ~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~-~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~-- 143 (482)
T KOG0335|consen 67 RDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIIS-GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPED-- 143 (482)
T ss_pred CccCCCcccccccchhHHHhhccccccccCCCcceeeccceee-cCCceEEEccCCCcchHHHHHHHHHHHHhcCccc--
Confidence 4455666788888899999999999999999999999999985 7999999999999999999999999998764321
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHH
Q 012337 246 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 325 (465)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~ 325 (465)
.........|++||++|||+||.|++++..++....+++++..+||.+...+.+.+..+|||+|||||+|.+
T Consensus 144 --------~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d 215 (482)
T KOG0335|consen 144 --------RGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKD 215 (482)
T ss_pred --------CcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhh
Confidence 111122257999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHhCCCccccccCceeEEEecchhHhhh-cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeec
Q 012337 326 LMSGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 404 (465)
Q Consensus 326 ~l~~~~~~~~~l~~i~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 404 (465)
++..+ .+.|..+++|||||||+|+| |+|...|..|+..+...+. ..+|+++||||+
T Consensus 216 ~~e~g---~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~--------------------~~~qt~mFSAtf 272 (482)
T KOG0335|consen 216 LIERG---KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPK--------------------NNRQTLLFSATF 272 (482)
T ss_pred hhhcc---eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCc--------------------cceeEEEEeccC
Confidence 99654 58899999999999999999 9999999999998876543 579999999999
Q ss_pred cCcH
Q 012337 405 ALSA 408 (465)
Q Consensus 405 ~~~~ 408 (465)
+...
T Consensus 273 p~~i 276 (482)
T KOG0335|consen 273 PKEI 276 (482)
T ss_pred Chhh
Confidence 8443
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.1e-34 Score=299.35 Aligned_cols=199 Identities=38% Similarity=0.696 Sum_probs=174.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 012337 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 253 (465)
Q Consensus 174 ~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 253 (465)
+|.+|+|++.++++|.++||..|||+|.++||.++ +++|+|++||||||||++|++|+++.+.....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~g~dvlv~apTGsGKTla~~lpil~~l~~~~~------------ 68 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLLQHLITRQP------------ 68 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHhhhccc------------
Confidence 58899999999999999999999999999999997 79999999999999999999999999854311
Q ss_pred hhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcc
Q 012337 254 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 333 (465)
Q Consensus 254 ~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~ 333 (465)
......++++|||+|||+||.|+++.+..++...++++..++||.+...+...+..+++||||||++|++++...
T Consensus 69 --~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~--- 143 (456)
T PRK10590 69 --HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN--- 143 (456)
T ss_pred --ccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC---
Confidence 011233568999999999999999999999999999999999999998888888889999999999999988643
Q ss_pred ccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc-HHHHH
Q 012337 334 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRK 412 (465)
Q Consensus 334 ~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~~~~ 412 (465)
...++++++|||||||+|++++|+..+..++..++ ..+|+++||||++.. ..+..
T Consensus 144 ~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~------------------------~~~q~l~~SAT~~~~~~~l~~ 199 (456)
T PRK10590 144 AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLP------------------------AKRQNLLFSATFSDDIKALAE 199 (456)
T ss_pred CcccccceEEEeecHHHHhccccHHHHHHHHHhCC------------------------ccCeEEEEeCCCcHHHHHHHH
Confidence 36789999999999999999999999999999887 678999999999864 34444
Q ss_pred Hh
Q 012337 413 KL 414 (465)
Q Consensus 413 ~l 414 (465)
++
T Consensus 200 ~~ 201 (456)
T PRK10590 200 KL 201 (456)
T ss_pred HH
Confidence 44
No 20
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-34 Score=282.79 Aligned_cols=203 Identities=35% Similarity=0.540 Sum_probs=178.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
...|.+++|.++|++++.+.||..||-||..+||.+| .|+|+++.|.||||||.+|++|+++.++.....
T Consensus 18 ~ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t--------- 87 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKT--------- 87 (569)
T ss_pred hccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhc---------
Confidence 3689999999999999999999999999999999998 699999999999999999999999999876432
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCC--ceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN--VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 329 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~--~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~ 329 (465)
..+..+|.++||+|||+||.|++..+.++....+ +++.-+...++.......+...++|+|+||++|+.++..
T Consensus 88 -----~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~ 162 (569)
T KOG0346|consen 88 -----NDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAA 162 (569)
T ss_pred -----ccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhh
Confidence 1345688999999999999999999999877654 566667777777777788889999999999999999976
Q ss_pred CCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHH
Q 012337 330 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 409 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 409 (465)
+. ...+.++++|||||||.|+..||.+.+..|..+|| +..|.++||||++....
T Consensus 163 ~~--~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LP------------------------r~~Q~~LmSATl~dDv~ 216 (569)
T KOG0346|consen 163 GV--LEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLP------------------------RIYQCFLMSATLSDDVQ 216 (569)
T ss_pred cc--chhhhheeeEEechhhhhhhcccHHHHHHHHHhCC------------------------chhhheeehhhhhhHHH
Confidence 53 25688999999999999999999999999999999 77899999999987777
Q ss_pred HHHHhh
Q 012337 410 FRKKLK 415 (465)
Q Consensus 410 ~~~~l~ 415 (465)
-++.|.
T Consensus 217 ~LKkL~ 222 (569)
T KOG0346|consen 217 ALKKLF 222 (569)
T ss_pred HHHHHh
Confidence 666653
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.6e-34 Score=303.02 Aligned_cols=197 Identities=37% Similarity=0.612 Sum_probs=172.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
..|.+|+|++.++++|...||..|||+|.++||.++ +|+|+|++||||||||++|++|++++++.....
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l-~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~---------- 77 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVAL-PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL---------- 77 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc----------
Confidence 469999999999999999999999999999999997 799999999999999999999999998643210
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 332 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~ 332 (465)
.......+++|||+|||+||.|+++.+..++...++++..++||.....+...+..+++|||+||++|++++...
T Consensus 78 ---~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-- 152 (572)
T PRK04537 78 ---ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-- 152 (572)
T ss_pred ---cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--
Confidence 011223579999999999999999999999999999999999999998888888888999999999999998643
Q ss_pred cccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 333 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 333 ~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
..+.++.+++|||||||+|++++|...+..|+..++.. ..+|+++||||++..
T Consensus 153 ~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~----------------------~~~q~ll~SATl~~~ 205 (572)
T PRK04537 153 KVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER----------------------GTRQTLLFSATLSHR 205 (572)
T ss_pred cccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc----------------------cCceEEEEeCCccHH
Confidence 23568899999999999999999999999999988721 368999999999753
No 22
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-33 Score=295.69 Aligned_cols=187 Identities=42% Similarity=0.681 Sum_probs=170.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
.+|.+|+|++.++++|..+||..|||+|.++||.++ +|+|++++||||||||++|++|+++++...
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l-~g~dvi~~a~TGsGKT~a~~lpil~~l~~~------------- 69 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAIL-AGKDVIAQAKTGSGKTAAFGLGLLQKLDVK------------- 69 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHhhhc-------------
Confidence 579999999999999999999999999999999997 799999999999999999999999987321
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
...+++|||+|||+||.|+++.+..++... ++++..++||.+...+...+..+++|+||||++|.+++.++
T Consensus 70 -------~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~- 141 (460)
T PRK11776 70 -------RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG- 141 (460)
T ss_pred -------cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC-
Confidence 235689999999999999999999988754 78999999999998888888899999999999999999654
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
...++++++|||||||+|++++|...+..++..++ ..+|+++||||++..
T Consensus 142 --~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~------------------------~~~q~ll~SAT~~~~ 191 (460)
T PRK11776 142 --TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP------------------------ARRQTLLFSATYPEG 191 (460)
T ss_pred --CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCC------------------------cccEEEEEEecCcHH
Confidence 36689999999999999999999999999999998 678999999999754
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.1e-33 Score=299.79 Aligned_cols=188 Identities=39% Similarity=0.704 Sum_probs=170.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
.+|.+|+|++.++++|.++||..|+|+|.++||.++ +++|+|++||||||||++|++|+++.+..
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll-~g~dvl~~ApTGsGKT~af~lpll~~l~~-------------- 70 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLLHNLDP-------------- 70 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHHHHHHHHHHHHhhh--------------
Confidence 469999999999999999999999999999999997 79999999999999999999999998742
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
....+++|||+|||+||.|+++.+..+.... ++.++.++||.+...+...+..+++|||+||++|+++|...
T Consensus 71 ------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~- 143 (629)
T PRK11634 71 ------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG- 143 (629)
T ss_pred ------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC-
Confidence 1235799999999999999999999987765 78999999999998888888889999999999999999653
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
...++++.+|||||||.|++++|...+..|+..++ ..+|+++||||++...
T Consensus 144 --~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp------------------------~~~q~llfSAT~p~~i 194 (629)
T PRK11634 144 --TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP------------------------EGHQTALFSATMPEAI 194 (629)
T ss_pred --CcchhhceEEEeccHHHHhhcccHHHHHHHHHhCC------------------------CCCeEEEEEccCChhH
Confidence 46789999999999999999999999999999998 6789999999998654
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.1e-33 Score=290.53 Aligned_cols=198 Identities=37% Similarity=0.627 Sum_probs=175.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 012337 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 253 (465)
Q Consensus 174 ~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 253 (465)
.|.+|+|++.+++.|...||..|+++|.++||.++ +|+|++++||||+|||++|++|+++++....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~------------- 67 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFP------------- 67 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhcc-------------
Confidence 58999999999999999999999999999999997 6999999999999999999999999986421
Q ss_pred hhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcc
Q 012337 254 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 333 (465)
Q Consensus 254 ~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~ 333 (465)
.....++++|||+||++||.|+++.+..++...++.+..++||.....+...+..+++||||||++|.+++...
T Consensus 68 ---~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~--- 141 (434)
T PRK11192 68 ---RRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE--- 141 (434)
T ss_pred ---ccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC---
Confidence 11234579999999999999999999999999999999999999998888888888999999999999999654
Q ss_pred ccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC--cHHHH
Q 012337 334 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SADFR 411 (465)
Q Consensus 334 ~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~--~~~~~ 411 (465)
.+.+.++.+|||||||+|++++|...+..|...++ ..+|+++||||++. ...+.
T Consensus 142 ~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~------------------------~~~q~~~~SAT~~~~~~~~~~ 197 (434)
T PRK11192 142 NFDCRAVETLILDEADRMLDMGFAQDIETIAAETR------------------------WRKQTLLFSATLEGDAVQDFA 197 (434)
T ss_pred CcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCc------------------------cccEEEEEEeecCHHHHHHHH
Confidence 36689999999999999999999999999988776 56899999999963 24555
Q ss_pred HHhh
Q 012337 412 KKLK 415 (465)
Q Consensus 412 ~~l~ 415 (465)
.++.
T Consensus 198 ~~~~ 201 (434)
T PRK11192 198 ERLL 201 (434)
T ss_pred HHHc
Confidence 5553
No 25
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-34 Score=304.05 Aligned_cols=203 Identities=37% Similarity=0.640 Sum_probs=185.9
Q ss_pred hcccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhh
Q 012337 166 AEISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 245 (465)
Q Consensus 166 ~~~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~ 245 (465)
...|.+..+|.+.+++..++..++++||..|+|||.+|||+++ .|+|||++|.||||||++|+||++.|+..++.
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~Im-sGrdvIgvakTgSGKT~af~LPmirhi~dQr~---- 432 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIM-SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP---- 432 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhc-cCcceEEeeccCCccchhhhcchhhhhhcCCC----
Confidence 4567889999999999999999999999999999999999997 79999999999999999999999988865542
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHH
Q 012337 246 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 325 (465)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~ 325 (465)
.....+|.+||++|||+||.||++.+..|++.+++++++++||.....+...++.++.|+|||||++++
T Consensus 433 -----------~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD 501 (997)
T KOG0334|consen 433 -----------LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMID 501 (997)
T ss_pred -----------hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhh
Confidence 223459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 326 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 326 ~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
++.....+...|.++.+||+||||+|++++|...+..|++.++ +.+||++||||++
T Consensus 502 ~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr------------------------pdrQtvlfSatfp 557 (997)
T KOG0334|consen 502 ILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR------------------------PDRQTVLFSATFP 557 (997)
T ss_pred hHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc------------------------hhhhhhhhhhhhh
Confidence 9877666667788888999999999999999999999999997 7899999999998
Q ss_pred CcH
Q 012337 406 LSA 408 (465)
Q Consensus 406 ~~~ 408 (465)
...
T Consensus 558 r~m 560 (997)
T KOG0334|consen 558 RSM 560 (997)
T ss_pred HHH
Confidence 653
No 26
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=272.44 Aligned_cols=188 Identities=41% Similarity=0.695 Sum_probs=174.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
..|..++|...+.+++.+.||+.|||||+..||.+| .++|++..|.||||||.||++|+++++...
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliL-e~~dvv~martgsgktaaf~ipm~e~Lk~~------------- 86 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMARTGSGKTAAFLIPMIEKLKSH------------- 86 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhccccccee-eccccceeeecCCcchhhHHHHHHHHHhhc-------------
Confidence 679999999999999999999999999999999997 799999999999999999999999998432
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 332 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~ 332 (465)
..++.++||++|||+||.|+.+.++.+++++++++.+++||....+++..+..++|||+|||+++..+...-
T Consensus 87 ------s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-- 158 (529)
T KOG0337|consen 87 ------SQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-- 158 (529)
T ss_pred ------cccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe--
Confidence 257789999999999999999999999999999999999999999999999999999999999998766432
Q ss_pred cccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 333 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 333 ~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
.+.|++++|||+||||+|++|||...+..++..++ ..+||++||||+|..
T Consensus 159 -~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~------------------------~~~QTllfSatlp~~ 208 (529)
T KOG0337|consen 159 -TLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLP------------------------ESRQTLLFSATLPRD 208 (529)
T ss_pred -eccccceeeeeehhhhHHHhhhhHHHHHHHHHhCC------------------------CcceEEEEeccCchh
Confidence 26799999999999999999999999999999999 678999999999843
No 27
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-33 Score=255.93 Aligned_cols=188 Identities=31% Similarity=0.560 Sum_probs=172.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
....|++++|+..++++++..||..|+.||+.+||.++ .|+||+++|..|+|||.+|.+.+|+.+--
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d~------------ 91 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLDI------------ 91 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeeccc------------
Confidence 35789999999999999999999999999999999998 69999999999999999999999987621
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
.....+||||+|||+||.|+.+.+..++.+.++++..+.||.+.....+.+.-+.+++.+|||++++++..+
T Consensus 92 --------~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~ 163 (400)
T KOG0328|consen 92 --------SVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR 163 (400)
T ss_pred --------ccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc
Confidence 122358999999999999999999999999999999999999998888888889999999999999999654
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
.+..+.+.+||+||||.||+.||..++..|+..|| +..|++++|||+|.
T Consensus 164 ---~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp------------------------~~~Qvv~~SATlp~ 212 (400)
T KOG0328|consen 164 ---SLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP------------------------PGAQVVLVSATLPH 212 (400)
T ss_pred ---cccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC------------------------CCceEEEEeccCcH
Confidence 36778999999999999999999999999999999 88999999999974
No 28
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-33 Score=270.33 Aligned_cols=198 Identities=35% Similarity=0.548 Sum_probs=174.5
Q ss_pred cccccccccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhh
Q 012337 168 ISTEFDAWNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 246 (465)
Q Consensus 168 ~~~~~~~~~~-l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~ 246 (465)
+|.+.-.|.+ ++-.+.++..+.+.||..|||||.++||.+| +|.|+++.|.||+|||++|++|.+-|+..+..
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~L-QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~----- 287 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILL-QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPK----- 287 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceee-cCcceEEEEecCCCcCHHHhccceeeeeccch-----
Confidence 4556666654 3557899999999999999999999999997 79999999999999999999999998865432
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHH
Q 012337 247 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 326 (465)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~ 326 (465)
+.....+|.+|+++|||+||.|+.-+++++. +-+++.++++||.+...+...++.+.+|+|+||++|.++
T Consensus 288 ---------~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL 357 (629)
T KOG0336|consen 288 ---------RREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDL 357 (629)
T ss_pred ---------hhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhh
Confidence 2235678999999999999999999988875 458899999999999999999999999999999999998
Q ss_pred HhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 327 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 327 l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
...+ ..+|++|.||||||||+||||||...|..|+--+. +.|||++.|||+|.
T Consensus 358 ~~~n---~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------------PDRqtvmTSATWP~ 410 (629)
T KOG0336|consen 358 QMDN---VINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------------PDRQTVMTSATWPE 410 (629)
T ss_pred hhcC---eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC------------------------CcceeeeecccCch
Confidence 8544 58899999999999999999999999999987776 78999999999986
Q ss_pred cH
Q 012337 407 SA 408 (465)
Q Consensus 407 ~~ 408 (465)
..
T Consensus 411 ~V 412 (629)
T KOG0336|consen 411 GV 412 (629)
T ss_pred HH
Confidence 54
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.98 E-value=1.5e-31 Score=280.69 Aligned_cols=196 Identities=40% Similarity=0.591 Sum_probs=168.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
...|.+++|++.++++|.+.||..|+++|.++|+.++ +|+|+|+++|||||||++|++|+++.++.....
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~-~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~--------- 155 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTL-AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP--------- 155 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc---------
Confidence 3578889999999999999999999999999999986 799999999999999999999999998754211
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh-CCCcEEEeChHHHHHHHhCC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~-~~~dIiV~TP~~L~~~l~~~ 330 (465)
.....+.+++|||+|||+||.|+++.+..+....++.+..++||.+...+...+. ..++|||+||++|+.++...
T Consensus 156 ----~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~ 231 (475)
T PRK01297 156 ----KERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG 231 (475)
T ss_pred ----cccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 0011235799999999999999999999999888999999999988877766654 56899999999999988543
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
...|+++++|||||||.+++++|...+..|+..++.. ..+|+++||||++.
T Consensus 232 ---~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~----------------------~~~q~i~~SAT~~~ 282 (475)
T PRK01297 232 ---EVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK----------------------EERQTLLFSATFTD 282 (475)
T ss_pred ---CcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC----------------------CCceEEEEEeecCH
Confidence 4678999999999999999999999999999887621 35799999999974
No 30
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=2.2e-31 Score=264.47 Aligned_cols=212 Identities=19% Similarity=0.239 Sum_probs=171.1
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEcCC-CCCh--hHHhhHHHHHHHHHHHHhhhhhhhh--------hhhhhhhcCCCC
Q 012337 193 FKEPTPIQKACIPAAAHQGKDIIGAAET-GSGK--TLAFGLPIMQRLLEEREKAGKMLEE--------KGEEAEKYAPKG 261 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~~~~dvl~~a~T-GsGK--T~~~~lpil~~l~~~~~~~~~~~~~--------~~~~~~~~~~~~ 261 (465)
-..+|+.|.+++..++ +|+|+++...| +.|+ +..||||+|+|++++++....++.. +.+...++++.+
T Consensus 214 s~pltalQ~~L~~~m~-~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMF-NYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred cCcchHHHHHHHHHHH-hhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3478999999998875 89999987655 3454 6679999999999999977666554 567888999999
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCc---------eEEEEecCCC---------HHHHHHHHh-------------
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINV---------RVVPIVGGMS---------TEKQERLLK------------- 310 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~---------~v~~~~gg~~---------~~~~~~~~~------------- 310 (465)
+|+||||||+|+.|..+++.|..+..+..- ++..-++|.. .......+.
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 999999999999999999999998654421 1112222210 011111111
Q ss_pred -----------CCCcEEEeChHHHHHHHhCCCccc---cccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCC
Q 012337 311 -----------ARPELVVGTPGRLWELMSGGEKHL---VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEG 376 (465)
Q Consensus 311 -----------~~~dIiV~TP~~L~~~l~~~~~~~---~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~ 376 (465)
..+|||||+|.+|.++|.+...+. ..|++|.++|||.||.|+ +++|.+|..|+++|+.+|..+|+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccC
Confidence 248999999999999998543333 348999999999999998 99999999999999999999999
Q ss_pred CcccccchhccccccCCCceEEEEeeeccC
Q 012337 377 QSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
+||||+|+||++.|+++.+||++||+...+
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~ 481 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHP 481 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccH
Confidence 999999999999999999999999999864
No 31
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=1.8e-30 Score=267.17 Aligned_cols=188 Identities=34% Similarity=0.569 Sum_probs=168.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
..+|.+|++++.+.+++...||..|+|+|.++|+.++ +++|++++||||||||++|++|+++++..
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~-~~~d~ii~apTGsGKT~~~~l~~l~~~~~------------- 92 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPIL-DGYDTIGQAQSGTGKTATFVIAALQLIDY------------- 92 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhcC-------------
Confidence 4779999999999999999999999999999999987 79999999999999999999999987721
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
...++++|||+||++||.|+.+.+..++...++.+..++|+.........+..+++|+|+||++|.+++...
T Consensus 93 -------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~- 164 (401)
T PTZ00424 93 -------DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR- 164 (401)
T ss_pred -------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC-
Confidence 123568999999999999999999999888888898999999887777778888999999999999988654
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
...++++++|||||||++++.++...+..++..++ ...|+++||||+++.
T Consensus 165 --~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~~ 214 (401)
T PTZ00424 165 --HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP------------------------PDVQVALFSATMPNE 214 (401)
T ss_pred --CcccccccEEEEecHHHHHhcchHHHHHHHHhhCC------------------------CCcEEEEEEecCCHH
Confidence 35689999999999999999999989999998886 678999999999854
No 32
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=6.6e-30 Score=238.25 Aligned_cols=186 Identities=48% Similarity=0.808 Sum_probs=167.2
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 012337 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 254 (465)
Q Consensus 175 ~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 254 (465)
|+++++++.+.+.+.+.|+..|+++|.++++.++ +|+|+++++|||+|||++|++|+++++...+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhc--------------
Confidence 6789999999999999999999999999999997 6999999999999999999999999986542
Q ss_pred hhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccc
Q 012337 255 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHL 334 (465)
Q Consensus 255 ~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~ 334 (465)
...++++||++||++|+.|+...+..+....++.+..++|+.........+..+++|+||||+.|..++.+..
T Consensus 66 ----~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--- 138 (203)
T cd00268 66 ----KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--- 138 (203)
T ss_pred ----ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---
Confidence 1246899999999999999999999998878899999999998877777776789999999999999887543
Q ss_pred cccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 335 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 335 ~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
..+..+.++||||||.+.+.++...+..++..++ ..+|+++||||++.
T Consensus 139 ~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~------------------------~~~~~~~~SAT~~~ 186 (203)
T cd00268 139 LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP------------------------KDRQTLLFSATMPK 186 (203)
T ss_pred CChhhCCEEEEeChHHhhccChHHHHHHHHHhCC------------------------cccEEEEEeccCCH
Confidence 6688999999999999998899999999999887 57899999999984
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=1.8e-29 Score=275.71 Aligned_cols=196 Identities=22% Similarity=0.278 Sum_probs=159.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcC
Q 012337 179 RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 258 (465)
Q Consensus 179 ~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 258 (465)
.+++.+.++|.+.||..|+++|.++||.++ +|+|+++++|||||||++|++|+++.+.+.
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il-~G~nvvv~apTGSGKTla~~LPiL~~l~~~------------------- 79 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAH-AGRHVVVATGTASGKSLAYQLPVLSALADD------------------- 79 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHH-CCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------------------
Confidence 378999999999999999999999999986 799999999999999999999999998531
Q ss_pred CCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHH-hCCCcccccc
Q 012337 259 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM-SGGEKHLVEL 337 (465)
Q Consensus 259 ~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l-~~~~~~~~~l 337 (465)
.++++|||+|||+||.|+...+..++ ..++++..+.|+... .+...+..+++|||+||++|...+ .....+...|
T Consensus 80 --~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l 155 (742)
T TIGR03817 80 --PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFL 155 (742)
T ss_pred --CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHH
Confidence 25689999999999999999999987 457888888888775 444566778999999999997533 2222233458
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhh
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 416 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 416 (465)
+++++|||||||.|.+ .|..++..++..|... .......+|+|+||||++++..++.++..
T Consensus 156 ~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri-----------------~~~~g~~~q~i~~SATi~n~~~~~~~l~g 216 (742)
T TIGR03817 156 RRLRYVVIDECHSYRG-VFGSHVALVLRRLRRL-----------------CARYGASPVFVLASATTADPAAAASRLIG 216 (742)
T ss_pred hcCCEEEEeChhhccC-ccHHHHHHHHHHHHHH-----------------HHhcCCCCEEEEEecCCCCHHHHHHHHcC
Confidence 9999999999999975 4888888887776421 01112468999999999999888877643
No 34
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.1e-30 Score=254.19 Aligned_cols=215 Identities=32% Similarity=0.471 Sum_probs=166.0
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHh--------cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 181 HPLLMKSIYRLGFKEPTPIQKACIPAAAH--------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 181 ~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~--------~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
...+..++..+++.+++|+|..++|.+|. .++||++.||||||||++|.|||++.+..+
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R------------- 211 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR------------- 211 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC-------------
Confidence 34456678899999999999999999864 267999999999999999999999998532
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCC-----CcEEEeChHHHHHHH
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR-----PELVVGTPGRLWELM 327 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~-----~dIiV~TP~~L~~~l 327 (465)
...+.|+|||+|||+|+.||++.|..++.+.|+.|+.+.|..+.....+.+.+. .||||+|||||+++|
T Consensus 212 ------~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 212 ------PVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred ------CccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 245689999999999999999999999999999999999999987776666542 399999999999999
Q ss_pred hCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCC-----CCcccccchhc---cc--cccCCCceE
Q 012337 328 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNE-----GQSEQTQTCVT---VS--SLQRKKRQT 397 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~-----~~~~~~~~~~~---~~--~~~~~~~q~ 397 (465)
.+ .+.++|.++++|||||||+|++..|..++..++.++.......- ...++-+-..+ .. +.-.++.+.
T Consensus 286 ~~--~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~k 363 (620)
T KOG0350|consen 286 NN--TKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWK 363 (620)
T ss_pred cC--CCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHh
Confidence 85 34588999999999999999988888888888877764311110 01111011111 11 111245679
Q ss_pred EEEeeeccCcHHHHHHhhh
Q 012337 398 LVFSATIALSADFRKKLKH 416 (465)
Q Consensus 398 i~~SATl~~~~~~~~~l~~ 416 (465)
++|||||+...+-++.|..
T Consensus 364 L~~satLsqdP~Kl~~l~l 382 (620)
T KOG0350|consen 364 LVFSATLSQDPSKLKDLTL 382 (620)
T ss_pred hhcchhhhcChHHHhhhhc
Confidence 9999999876665655543
No 35
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=1.3e-28 Score=270.77 Aligned_cols=192 Identities=24% Similarity=0.299 Sum_probs=164.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 012337 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 253 (465)
Q Consensus 174 ~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 253 (465)
.|.+|+|++.+++.+...||..|+|+|.++++..+.+|+|++++||||||||++|.+|++.++..
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------------- 66 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------------- 66 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---------------
Confidence 47889999999999999999999999999999856689999999999999999999999998831
Q ss_pred hhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcc
Q 012337 254 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 333 (465)
Q Consensus 254 ~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~ 333 (465)
+.++|||+|||+||.|++..+..+.. .+++++.++|+...... ....++|+||||+++..++.+..
T Consensus 67 --------~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~-- 132 (737)
T PRK02362 67 --------GGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA-- 132 (737)
T ss_pred --------CCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh--
Confidence 34799999999999999999997653 58899999998765332 23468999999999998886532
Q ss_pred ccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHH
Q 012337 334 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 413 (465)
Q Consensus 334 ~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 413 (465)
..+.++.+|||||||.|.+.+++..++.++..+...+ ..+|+|+||||+++..++..|
T Consensus 133 -~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~---------------------~~~qii~lSATl~n~~~la~w 190 (737)
T PRK02362 133 -PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN---------------------PDLQVVALSATIGNADELADW 190 (737)
T ss_pred -hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC---------------------CCCcEEEEcccCCCHHHHHHH
Confidence 4578999999999999998889888888887765322 457999999999999999999
Q ss_pred hhh
Q 012337 414 LKH 416 (465)
Q Consensus 414 l~~ 416 (465)
+..
T Consensus 191 l~~ 193 (737)
T PRK02362 191 LDA 193 (737)
T ss_pred hCC
Confidence 874
No 36
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.3e-29 Score=241.03 Aligned_cols=189 Identities=34% Similarity=0.646 Sum_probs=168.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
-+.+|.+++|++.|++.++..||..|+.||+.||++++ .|.|+++++.+|+|||.+|++++++++--
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~------------ 90 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDM------------ 90 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCc------------
Confidence 35689999999999999999999999999999999998 69999999999999999999999998721
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH-hCCCcEEEeChHHHHHHHhC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSG 329 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~-~~~~dIiV~TP~~L~~~l~~ 329 (465)
...-.+||+++|||+||.|+......++...++++..+.||.........+ ...++|+|+|||++.+++..
T Consensus 91 --------~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~ 162 (397)
T KOG0327|consen 91 --------SVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR 162 (397)
T ss_pred --------chHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc
Confidence 122347999999999999999999999999999999999999887554444 45689999999999999965
Q ss_pred CCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 330 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
+ .+....+.++|+||||.|+..||.+.|..|+.++| ...|+++||||.+..
T Consensus 163 ~---~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp------------------------~~vQv~l~SAT~p~~ 213 (397)
T KOG0327|consen 163 G---SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELP------------------------SDVQVVLLSATMPSD 213 (397)
T ss_pred c---cccccceeEEeecchHhhhccchHHHHHHHHHHcC------------------------cchhheeecccCcHH
Confidence 4 46678899999999999999999999999999999 778999999999843
No 37
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2e-28 Score=223.90 Aligned_cols=187 Identities=36% Similarity=0.662 Sum_probs=168.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
..|.++-|+|.+++++-..||..|+++|.++||.++. |-||+++|.+|.|||.+|.|..|+.+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqail-gmdvlcqaksgmgktavfvl~tlqqi---------------- 104 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAIL-GMDVLCQAKSGMGKTAVFVLATLQQI---------------- 104 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhh-cchhheecccCCCceeeeehhhhhhc----------------
Confidence 5677888999999999999999999999999999985 99999999999999999999999887
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
.+..+..-+|++|.||+||.|+.++...++++. ++++.+++||.........+++.++|+|+|||+++.++.+.
T Consensus 105 ----epv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k- 179 (387)
T KOG0329|consen 105 ----EPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR- 179 (387)
T ss_pred ----CCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc-
Confidence 233456789999999999999999999999876 58999999999999999999999999999999999999764
Q ss_pred ccccccCceeEEEecchhHhhhc-CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 332 KHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
.+.|+++..+|+||||.|+++ .++..++.|+...| ...|+++||||++..
T Consensus 180 --~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp------------------------~~KQvmmfsatlske 230 (387)
T KOG0329|consen 180 --SLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSKE 230 (387)
T ss_pred --cCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCc------------------------ccceeeeeeeecchh
Confidence 488999999999999999854 57899999998887 678999999999744
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=99.96 E-value=3.6e-28 Score=266.75 Aligned_cols=190 Identities=22% Similarity=0.319 Sum_probs=165.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 012337 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 253 (465)
Q Consensus 174 ~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 253 (465)
.|.++++++.+.+.+.+.||..|+|+|.++++..+.+|+|+++++|||||||++|.+|++.+++..
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------------- 67 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------------- 67 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--------------
Confidence 467889999999999999999999999999997556899999999999999999999999987531
Q ss_pred hhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcc
Q 012337 254 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 333 (465)
Q Consensus 254 ~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~ 333 (465)
+.++|||+||++||.|+++.+..+. ..++++..++|+...... +...++|+|+||+++..++.+..
T Consensus 68 --------~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~-- 133 (720)
T PRK00254 68 --------GGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS-- 133 (720)
T ss_pred --------CCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc--
Confidence 3589999999999999999998764 468999999998865432 23568999999999988886432
Q ss_pred ccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHH
Q 012337 334 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 413 (465)
Q Consensus 334 ~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 413 (465)
..++++.+|||||+|.+.+.++...+..++.++. ..+|+|++|||+++..++..|
T Consensus 134 -~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~------------------------~~~qiI~lSATl~n~~~la~w 188 (720)
T PRK00254 134 -SWIKDVKLVVADEIHLIGSYDRGATLEMILTHML------------------------GRAQILGLSATVGNAEELAEW 188 (720)
T ss_pred -hhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC------------------------cCCcEEEEEccCCCHHHHHHH
Confidence 4578999999999999998889999999998876 567999999999999999999
Q ss_pred hhh
Q 012337 414 LKH 416 (465)
Q Consensus 414 l~~ 416 (465)
+..
T Consensus 189 l~~ 191 (720)
T PRK00254 189 LNA 191 (720)
T ss_pred hCC
Confidence 865
No 39
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.95 E-value=1.9e-28 Score=248.11 Aligned_cols=187 Identities=34% Similarity=0.560 Sum_probs=166.9
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhh
Q 012337 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 249 (465)
Q Consensus 170 ~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 249 (465)
.....|.+|.|...++..|.+.+|..||+||..|||.++ .+-|+|++|..|+|||++|.+.+++.+
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~-~kmDliVQaKSGTGKTlVfsv~av~sl------------- 87 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIF-SKMDLIVQAKSGTGKTLVFSVLAVESL------------- 87 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhh-cccceEEEecCCCCceEEEEeeeehhc-------------
Confidence 345678999999999999999999999999999999997 699999999999999999999998877
Q ss_pred hhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHcc-CCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHh
Q 012337 250 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG-INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 328 (465)
Q Consensus 250 ~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~-~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~ 328 (465)
......++++||+|||++|.||.+.+..++.. .|++|.+++||+........++ .++|+|||||||..++.
T Consensus 88 -------~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~e 159 (980)
T KOG4284|consen 88 -------DSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVE 159 (980)
T ss_pred -------CcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHH
Confidence 33456789999999999999999999999864 5899999999998866655554 58899999999999996
Q ss_pred CCCccccccCceeEEEecchhHhhh-cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 329 GGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
.+ .++.++|+++||||||.|++ ..|...|.-|+..|| ..+|+++||||.+
T Consensus 160 l~---~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP------------------------~~rQv~a~SATYp 210 (980)
T KOG4284|consen 160 LG---AMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP------------------------QIRQVAAFSATYP 210 (980)
T ss_pred hc---CCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc------------------------hhheeeEEeccCc
Confidence 54 58899999999999999998 568889999999999 7899999999996
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.95 E-value=1.4e-26 Score=257.58 Aligned_cols=200 Identities=27% Similarity=0.366 Sum_probs=158.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 012337 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 259 (465)
Q Consensus 180 l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (465)
+++.+.+.+.. +|..|+|+|.++||.++ +|+|++++||||||||++|++|++++++..... ...
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il-~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~--------------~~~ 81 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIH-EGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE--------------GEL 81 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHH-cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc--------------cCC
Confidence 56666666554 79999999999999986 799999999999999999999999998743210 011
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHH-------HH----ccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHH
Q 012337 260 KGHLRALIITPTRELALQVTDHLKE-------VA----KGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 327 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~~~l~~-------l~----~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l 327 (465)
..++++|||+|||+||.|++..+.. ++ ... ++++...+|+.+.......+...++|+||||++|..++
T Consensus 82 ~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 82 EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILL 161 (876)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHh
Confidence 3467999999999999999886653 22 122 67889999999988877778888999999999998887
Q ss_pred hCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 328 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
.+. .....|+++++|||||||.|++..+..++..++..|.... ....|+|+||||+++.
T Consensus 162 ~~~-~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--------------------~~~~q~IglSATl~~~ 220 (876)
T PRK13767 162 NSP-KFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--------------------GGEFVRIGLSATIEPL 220 (876)
T ss_pred cCh-hHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--------------------CCCCeEEEEecccCCH
Confidence 542 1123588999999999999998878888777776664211 1467999999999998
Q ss_pred HHHHHHhhh
Q 012337 408 ADFRKKLKH 416 (465)
Q Consensus 408 ~~~~~~l~~ 416 (465)
..+..||..
T Consensus 221 ~~va~~L~~ 229 (876)
T PRK13767 221 EEVAKFLVG 229 (876)
T ss_pred HHHHHHhcC
Confidence 888888854
No 41
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=5.7e-26 Score=204.97 Aligned_cols=162 Identities=40% Similarity=0.585 Sum_probs=138.2
Q ss_pred cHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHH
Q 012337 197 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~ 276 (465)
||+|.++|+.++ +++++++.||||+|||++|++|+++.+.+. ...++||++|+++|+.
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~---------------------~~~~~lii~P~~~l~~ 58 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEG---------------------KDARVLIIVPTRALAE 58 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---------------------SSSEEEEEESSHHHHH
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccC---------------------CCceEEEEeecccccc
Confidence 799999999997 799999999999999999999999988532 2338999999999999
Q ss_pred HHHHHHHHHHccCCceEEEEecCCCHH-HHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcC
Q 012337 277 QVTDHLKEVAKGINVRVVPIVGGMSTE-KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG 355 (465)
Q Consensus 277 Qv~~~l~~l~~~~~~~v~~~~gg~~~~-~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~ 355 (465)
|+.+.+..++...++++..++|+.... .....+..+++|+|+||.+|..++.... ..+.++.+|||||+|.+..++
T Consensus 59 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~---~~~~~~~~iViDE~h~l~~~~ 135 (169)
T PF00270_consen 59 QQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK---INISRLSLIVIDEAHHLSDET 135 (169)
T ss_dssp HHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS---STGTTESEEEEETHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCcchhhccccccc---cccccceeeccCccccccccc
Confidence 999999999888788999999999865 4444555679999999999999997632 356679999999999999888
Q ss_pred CHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 356 HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 356 ~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
+...+..|+..+... ...|++++|||++
T Consensus 136 ~~~~~~~i~~~~~~~----------------------~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 136 FRAMLKSILRRLKRF----------------------KNIQIILLSATLP 163 (169)
T ss_dssp HHHHHHHHHHHSHTT----------------------TTSEEEEEESSST
T ss_pred HHHHHHHHHHHhcCC----------------------CCCcEEEEeeCCC
Confidence 888899999887522 3578999999997
No 42
>PRK01172 ski2-like helicase; Provisional
Probab=99.94 E-value=4.7e-26 Score=248.72 Aligned_cols=191 Identities=19% Similarity=0.276 Sum_probs=159.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 012337 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 253 (465)
Q Consensus 174 ~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 253 (465)
.|.+++|++.+.+.+...+|. |+++|.++++.++ +++|++++||||||||++|.++++.++..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~-~~~nvlv~apTGSGKTl~a~lail~~l~~--------------- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLR-KGENVIVSVPTAAGKTLIAYSAIYETFLA--------------- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHh-cCCcEEEECCCCchHHHHHHHHHHHHHHh---------------
Confidence 467889999999999999995 9999999999975 79999999999999999999999988742
Q ss_pred hhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcc
Q 012337 254 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 333 (465)
Q Consensus 254 ~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~ 333 (465)
+.++|||+|||+||.|+++.+..+. ..++++...+|+...... +...++|+|+||+++..++.+.
T Consensus 65 --------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~--- 129 (674)
T PRK01172 65 --------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD--- 129 (674)
T ss_pred --------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC---
Confidence 2479999999999999999998864 468888888888764322 2346899999999998888543
Q ss_pred ccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHH
Q 012337 334 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 413 (465)
Q Consensus 334 ~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 413 (465)
...+.++++|||||||.+.+.++...+..++..+...+ ...|+|+||||+++..++.+|
T Consensus 130 ~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~---------------------~~~riI~lSATl~n~~~la~w 188 (674)
T PRK01172 130 PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN---------------------PDARILALSATVSNANELAQW 188 (674)
T ss_pred hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC---------------------cCCcEEEEeCccCCHHHHHHH
Confidence 34588999999999999998888888888776654221 468999999999999999999
Q ss_pred hhhc
Q 012337 414 LKHG 417 (465)
Q Consensus 414 l~~~ 417 (465)
+...
T Consensus 189 l~~~ 192 (674)
T PRK01172 189 LNAS 192 (674)
T ss_pred hCCC
Confidence 8653
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.93 E-value=9e-26 Score=242.15 Aligned_cols=200 Identities=26% Similarity=0.338 Sum_probs=174.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 012337 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 259 (465)
Q Consensus 180 l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (465)
|++.+.+.+... |..|||.|.++||.+. +|+|+|++||||||||+++.||+++.+++.. ....
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~-~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---------------~~~~ 70 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIH-SGENVLIIAPTGSGKTEAAFLPVINELLSLG---------------KGKL 70 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHh-CCCceEEEcCCCCChHHHHHHHHHHHHHhcc---------------CCCC
Confidence 688999999888 9999999999999996 8999999999999999999999999998651 1123
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCc
Q 012337 260 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 339 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 339 (465)
..+..+|||+|.|+|...+...+...+..+|+.+..-+|+++.....+..++.|||+|+||+.|.-++... .....|++
T Consensus 71 ~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~ 149 (814)
T COG1201 71 EDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRD 149 (814)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcC
Confidence 45689999999999999999999999999999999999999999998889999999999999998888653 22344899
Q ss_pred eeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhcc
Q 012337 340 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 418 (465)
Q Consensus 340 i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 418 (465)
++++||||+|.+.+.-.+.++.--+.+|.... ...|.|++|||+.+....++||....
T Consensus 150 vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~---------------------~~~qRIGLSATV~~~~~varfL~g~~ 207 (814)
T COG1201 150 VRYVIVDEIHALAESKRGVQLALSLERLRELA---------------------GDFQRIGLSATVGPPEEVAKFLVGFG 207 (814)
T ss_pred CcEEEeehhhhhhccccchhhhhhHHHHHhhC---------------------cccEEEeehhccCCHHHHHHHhcCCC
Confidence 99999999999998878888877777776332 25799999999999999999997654
No 44
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.3e-25 Score=215.48 Aligned_cols=194 Identities=32% Similarity=0.547 Sum_probs=162.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
..+|.+|+|+|.++++++.++|..|+.||..++|.++.+ .+++|.++..|+|||.||.|.+|.++
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv-------------- 154 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV-------------- 154 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc--------------
Confidence 478999999999999999999999999999999998753 46999999999999999999999887
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
+.....|++|.|+|||+||.|+.+.+.+.++++++.+.+.+-|....+- . .-..+|+|+|||-+.+++..
T Consensus 155 ------d~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~--~i~eqIviGTPGtv~Dlm~k- 224 (477)
T KOG0332|consen 155 ------DPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-N--KLTEQIVIGTPGTVLDLMLK- 224 (477)
T ss_pred ------CccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-C--cchhheeeCCCccHHHHHHH-
Confidence 3445678999999999999999999999999988888877766522111 1 11247999999999999853
Q ss_pred CccccccCceeEEEecchhHhhhc-CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH-
Q 012337 331 EKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA- 408 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~- 408 (465)
.+...+..++++|+||||.|++. ||.++-..|+..++ ...|+|+||||+....
T Consensus 225 -lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP------------------------~~~QllLFSATf~e~V~ 279 (477)
T KOG0332|consen 225 -LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP------------------------RNQQLLLFSATFVEKVA 279 (477)
T ss_pred -HHhhChhhceEEEecchhhhhhcccccccchhhhhhcC------------------------CcceEEeeechhHHHHH
Confidence 24577899999999999999964 68888889998888 6789999999997543
Q ss_pred HHHHHh
Q 012337 409 DFRKKL 414 (465)
Q Consensus 409 ~~~~~l 414 (465)
.|+.++
T Consensus 280 ~Fa~ki 285 (477)
T KOG0332|consen 280 AFALKI 285 (477)
T ss_pred HHHHHh
Confidence 566554
No 45
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.8e-25 Score=226.05 Aligned_cols=208 Identities=31% Similarity=0.491 Sum_probs=166.3
Q ss_pred hccccccccccc----CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHH
Q 012337 166 AEISTEFDAWNE----LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEERE 241 (465)
Q Consensus 166 ~~~~~~~~~~~~----l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~ 241 (465)
..+|.+...|.+ +..++.+++.+...+|..|+|+|.+++|.++ .++|+++|||||||||++|++|+++++....
T Consensus 125 ~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl-~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~- 202 (593)
T KOG0344|consen 125 FHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFL-EKRDVLACAPTGSGKTLAFNLPILQHLKDLS- 202 (593)
T ss_pred CCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhh-cccceEEeccCCCcchhhhhhHHHHHHHHhh-
Confidence 444566677765 5689999999999999999999999999997 6999999999999999999999999996543
Q ss_pred hhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHH--ccCCceEEEEecCCCHHH-HHHHHhCCCcEEEe
Q 012337 242 KAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA--KGINVRVVPIVGGMSTEK-QERLLKARPELVVG 318 (465)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~--~~~~~~v~~~~gg~~~~~-~~~~~~~~~dIiV~ 318 (465)
...+..+.+++|+.|||+||.|++.++.++. .+.++++..+........ +.......++|+|+
T Consensus 203 --------------~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~ 268 (593)
T KOG0344|consen 203 --------------QEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIS 268 (593)
T ss_pred --------------cccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhc
Confidence 1234678899999999999999999999998 666777665554433222 22223346899999
Q ss_pred ChHHHHHHHhCCCccccccCceeEEEecchhHhhhc-CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceE
Q 012337 319 TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 397 (465)
Q Consensus 319 TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 397 (465)
||.+|..++..+ .....++.|.|+|+||||.+++. .|..++..|+..+.. +...+
T Consensus 269 TP~ri~~~~~~~-~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-----------------------~~i~~ 324 (593)
T KOG0344|consen 269 TPMRIVGLLGLG-KLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-----------------------PDIRV 324 (593)
T ss_pred CHHHHHHHhcCC-CccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC-----------------------cchhh
Confidence 999999999654 22367999999999999999998 899999999988763 45677
Q ss_pred EEEeeeccCcHHHHHHhh
Q 012337 398 LVFSATIALSADFRKKLK 415 (465)
Q Consensus 398 i~~SATl~~~~~~~~~l~ 415 (465)
-+||||++. ..-+|..
T Consensus 325 a~FSat~~~--~VEE~~~ 340 (593)
T KOG0344|consen 325 ALFSATISV--YVEEWAE 340 (593)
T ss_pred hhhhccccH--HHHHHHH
Confidence 789999964 3344443
No 46
>PRK09401 reverse gyrase; Reviewed
Probab=99.91 E-value=4.8e-23 Score=232.87 Aligned_cols=184 Identities=23% Similarity=0.268 Sum_probs=135.5
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+ .|+++|..++|.++ .|+|++++||||||||. |+++++..+.. .++++|||+|
T Consensus 77 ~G~-~pt~iQ~~~i~~il-~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------------------~g~~alIL~P 131 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLL-LGESFAIIAPTGVGKTT-FGLVMSLYLAK----------------------KGKKSYIIFP 131 (1176)
T ss_pred cCC-CCcHHHHHHHHHHH-CCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------------------cCCeEEEEec
Confidence 577 89999999999997 79999999999999995 66665544421 2568999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCH-----HHHHHHHh-CCCcEEEeChHHHHHHHhCCCccccccCceeEEE
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMST-----EKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 344 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~-----~~~~~~~~-~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lV 344 (465)
||+||.|+++.+..++...++.+..++|+... ..+...+. ..++|+||||++|.+++. .+.+..+++||
T Consensus 132 TreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-----~l~~~~~~~lV 206 (1176)
T PRK09401 132 TRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-----ELPKKKFDFVF 206 (1176)
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-----hccccccCEEE
Confidence 99999999999999998888888888776542 22333344 468999999999998885 14456799999
Q ss_pred ecchhHhhh-----------cCCH-HHHHHHHHhCCCCCCCCCCCcccccchhc--cccccCCCceEEEEeeeccC
Q 012337 345 LDEADRMIE-----------NGHF-RELQSIIDMLPMTNGSNEGQSEQTQTCVT--VSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 345 iDEah~ll~-----------~~~~-~~l~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~i~~SATl~~ 406 (465)
|||||+|++ +||. ..|..++..++..... ..+..+++.+. +.......+|+++||||+++
T Consensus 207 vDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~--~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 207 VDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY--EEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred EEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc--chhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 999999996 6774 6888899888742110 11111111111 11111237899999999975
No 47
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.90 E-value=2.5e-23 Score=224.55 Aligned_cols=168 Identities=20% Similarity=0.230 Sum_probs=130.6
Q ss_pred CCCCCCcHHHHHHHHHHHhcCC-cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE-E
Q 012337 191 LGFKEPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI-I 268 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~-dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi-l 268 (465)
.||. |||||.++||.++ .|+ ++++++|||||||.+|.++++... .....|+.|| +
T Consensus 12 ~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~---------------------~~~~~~~rLv~~ 68 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVE---------------------IGAKVPRRLVYV 68 (844)
T ss_pred hCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhcccc---------------------ccccccceEEEe
Confidence 5886 9999999999997 677 688889999999997766655321 0123455555 7
Q ss_pred cccHHHHHHHHHHHHHHHccC-----------------------CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHH
Q 012337 269 TPTRELALQVTDHLKEVAKGI-----------------------NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 325 (465)
Q Consensus 269 ~Ptr~La~Qv~~~l~~l~~~~-----------------------~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~ 325 (465)
+|||+||.|+++.+..+++.+ ++++..++||.+...+...+..+++|||||+ +
T Consensus 69 vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D 144 (844)
T TIGR02621 69 VNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----D 144 (844)
T ss_pred CchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----H
Confidence 799999999999999998755 4889999999999999999999999999995 4
Q ss_pred HHhCCCc----------ccc---ccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccC
Q 012337 326 LMSGGEK----------HLV---ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQR 392 (465)
Q Consensus 326 ~l~~~~~----------~~~---~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (465)
++.++.. +.+ .|+++++||||||| ++++|...+..|+..+...+. .
T Consensus 145 ~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~-------------------~ 203 (844)
T TIGR02621 145 MIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD-------------------F 203 (844)
T ss_pred HHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc-------------------c
Confidence 4433211 001 27889999999999 579999999999987531100 0
Q ss_pred CCceEEEEeeeccC
Q 012337 393 KKRQTLVFSATIAL 406 (465)
Q Consensus 393 ~~~q~i~~SATl~~ 406 (465)
.++|+++||||++.
T Consensus 204 rprQtLLFSAT~p~ 217 (844)
T TIGR02621 204 LPLRVVELTATSRT 217 (844)
T ss_pred ccceEEEEecCCCc
Confidence 24799999999974
No 48
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.90 E-value=3.6e-23 Score=227.40 Aligned_cols=197 Identities=24% Similarity=0.356 Sum_probs=163.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCC
Q 012337 181 HPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 260 (465)
Q Consensus 181 ~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 260 (465)
...+..++...|...|+.+|.+|+..+ .+|+|||++.+||||||.+|++||++++++..
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~-~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-------------------- 114 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLI-REGRNVVVTTGTGSGKTESFLLPILDHLLRDP-------------------- 114 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHH-HCCCCEEEECCCCCchhHHHHHHHHHHHhhCc--------------------
Confidence 445688888899999999999999877 58999999999999999999999999998642
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCC--ceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHH-HHhCCCcccccc
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGIN--VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE-LMSGGEKHLVEL 337 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~--~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~-~l~~~~~~~~~l 337 (465)
.-++|+|.||++||+.+.+.|.++....+ +.+..+.|.+..........+.++||+++|.+|.. +|.+...+...+
T Consensus 115 -~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~ 193 (851)
T COG1205 115 -SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLL 193 (851)
T ss_pred -CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHH
Confidence 11799999999999999999999998777 88888999999888878888999999999999988 455545566668
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhc
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 417 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 417 (465)
+++++|||||+|..- --|+.+|..++.+|...- -+. ...+|+|..|||++++.+|...+...
T Consensus 194 ~~Lk~lVvDElHtYr-Gv~GS~vA~llRRL~~~~-------------~~~----~~~~q~i~~SAT~~np~e~~~~l~~~ 255 (851)
T COG1205 194 RNLKYLVVDELHTYR-GVQGSEVALLLRRLLRRL-------------RRY----GSPLQIICTSATLANPGEFAEELFGR 255 (851)
T ss_pred hcCcEEEEecceecc-ccchhHHHHHHHHHHHHH-------------hcc----CCCceEEEEeccccChHHHHHHhcCC
Confidence 999999999999764 557777777776664210 000 14689999999999999999887543
No 49
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=1.1e-22 Score=222.99 Aligned_cols=185 Identities=25% Similarity=0.335 Sum_probs=134.7
Q ss_pred cccc--CCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 174 AWNE--LRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 174 ~~~~--l~l~~~l~~~l~~-~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
.|.. ++....+...+.. +||..|+|+|.++|+.++ .|+|+|+++|||+|||+||+||+|..
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL-~GrDVLVimPTGSGKSLcYQLPAL~~--------------- 499 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATM-SGYDVFVLMPTGGGKSLTYQLPALIC--------------- 499 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHHHHHHHHHHHc---------------
Confidence 3553 3344556555554 799999999999999997 79999999999999999999999852
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh------CCCcEEEeChHHHH
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK------ARPELVVGTPGRLW 324 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~------~~~dIiV~TP~~L~ 324 (465)
...+|||+|+++|+.+++..+.. .++.+..+.|+.....+...+. ..++|||+||++|.
T Consensus 500 -----------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~ 564 (1195)
T PLN03137 500 -----------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVA 564 (1195)
T ss_pred -----------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhh
Confidence 13699999999999876666654 3789999999998776655443 46899999999985
Q ss_pred H---HHhCCCccccccCceeEEEecchhHhhhcCC--HHHHHH---HHHhCCCCCCCCCCCcccccchhccccccCCCce
Q 012337 325 E---LMSGGEKHLVELHTLSFFVLDEADRMIENGH--FRELQS---IIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQ 396 (465)
Q Consensus 325 ~---~l~~~~~~~~~l~~i~~lViDEah~ll~~~~--~~~l~~---i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 396 (465)
. ++.. .........+.+|||||||+|++||+ ...+.. +...+ +.+|
T Consensus 565 ~~d~ll~~-L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~f-------------------------p~vP 618 (1195)
T PLN03137 565 KSDSLLRH-LENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKF-------------------------PNIP 618 (1195)
T ss_pred cchHHHHH-HHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhC-------------------------CCCC
Confidence 2 2211 00111234588999999999999984 333333 33333 3578
Q ss_pred EEEEeeeccCcH--HHHHHhh
Q 012337 397 TLVFSATIALSA--DFRKKLK 415 (465)
Q Consensus 397 ~i~~SATl~~~~--~~~~~l~ 415 (465)
+++||||++... ++...|.
T Consensus 619 ilALTATAT~~V~eDI~~~L~ 639 (1195)
T PLN03137 619 VLALTATATASVKEDVVQALG 639 (1195)
T ss_pred eEEEEecCCHHHHHHHHHHcC
Confidence 999999998542 3445543
No 50
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.90 E-value=3.3e-23 Score=224.82 Aligned_cols=190 Identities=22% Similarity=0.256 Sum_probs=158.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcC
Q 012337 179 RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 258 (465)
Q Consensus 179 ~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 258 (465)
.+...+..-+...++..+.+-|+.++...+..+.|+|+|+|||||||+.+++.+++.+.+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~------------------- 75 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG------------------- 75 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------------------
Confidence 3567777777778887888888888877666689999999999999999999999998642
Q ss_pred CCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 259 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 259 ~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
+.++|||||+|+||.++++.|. .....|++|...+|+...... .-.+++|||+||+++-.++.+.. ..+.
T Consensus 76 ---~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~---~~~~ 145 (766)
T COG1204 76 ---GGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRP---SWIE 145 (766)
T ss_pred ---CCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCc---chhh
Confidence 3479999999999999999999 445679999999999875442 23568999999999988886643 3578
Q ss_pred ceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhcc
Q 012337 339 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 418 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 418 (465)
.+++|||||+|.+.+...+..++.|+..++..+ ...|++++|||++|..+++.||....
T Consensus 146 ~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~---------------------~~~rivgLSATlpN~~evA~wL~a~~ 204 (766)
T COG1204 146 EVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN---------------------ELIRIVGLSATLPNAEEVADWLNAKL 204 (766)
T ss_pred cccEEEEeeeeecCCcccCceehhHHHHHHhhC---------------------cceEEEEEeeecCCHHHHHHHhCCcc
Confidence 999999999999987778888888888776432 44799999999999999999998653
No 51
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=1.3e-22 Score=212.66 Aligned_cols=167 Identities=23% Similarity=0.309 Sum_probs=125.5
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc
Q 012337 190 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 269 (465)
Q Consensus 190 ~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 269 (465)
.+||..|+|+|.++|+.++ +|+|+++++|||||||++|++|++.. +..+|||+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l-~g~dvlv~apTGsGKTl~y~lp~l~~--------------------------~~~~lVi~ 58 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVL-LGRDCFVVMPTGGGKSLCYQLPALCS--------------------------DGITLVIS 58 (470)
T ss_pred hcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHhHHHHHHHHHc--------------------------CCcEEEEe
Confidence 4799999999999999997 69999999999999999999998742 23699999
Q ss_pred ccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH----HhCCCcEEEeChHHHHHHHhCCCcccc-ccCceeEEE
Q 012337 270 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL----LKARPELVVGTPGRLWELMSGGEKHLV-ELHTLSFFV 344 (465)
Q Consensus 270 Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~----~~~~~dIiV~TP~~L~~~l~~~~~~~~-~l~~i~~lV 344 (465)
|||+|+.|++..+..+ ++.+..+.|+......... ....++|+++||++|..... ....+ .+..+.+||
T Consensus 59 P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~--~~~~l~~~~~i~~iV 132 (470)
T TIGR00614 59 PLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNR--LLQTLEERKGITLIA 132 (470)
T ss_pred cHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchh--HHHHHHhcCCcCEEE
Confidence 9999999999988754 6788888888776543322 23458999999999753210 00012 467899999
Q ss_pred ecchhHhhhcCC--HHH---HHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc--HHHHHHh
Q 012337 345 LDEADRMIENGH--FRE---LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKKL 414 (465)
Q Consensus 345 iDEah~ll~~~~--~~~---l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~l 414 (465)
|||||++++||+ ... +..+...+ +..|+++||||++.. .+...++
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~~-------------------------~~~~~l~lTAT~~~~~~~di~~~l 184 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQKF-------------------------PNVPIMALTATASPSVREDILRQL 184 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHHc-------------------------CCCceEEEecCCCHHHHHHHHHHc
Confidence 999999998874 333 33344444 356899999999754 2344444
No 52
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.88 E-value=5.9e-22 Score=224.31 Aligned_cols=155 Identities=23% Similarity=0.294 Sum_probs=119.2
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 012337 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 263 (465)
Q Consensus 184 l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (465)
+.+.+.......|+++|+.++|.++ .|+|++++||||||||+ |.+|++..+.. .++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il-~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------------------~g~ 122 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVL-RGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------------------KGK 122 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHh-CCCeEEEECCCCCCHHH-HHHHHHHHHHh----------------------cCC
Confidence 3444544344489999999999997 69999999999999996 77777665421 156
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHccCCceEE---EEecCCCHHHHHH---HHh-CCCcEEEeChHHHHHHHhCCCccccc
Q 012337 264 RALIITPTRELALQVTDHLKEVAKGINVRVV---PIVGGMSTEKQER---LLK-ARPELVVGTPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~---~~~gg~~~~~~~~---~~~-~~~dIiV~TP~~L~~~l~~~~~~~~~ 336 (465)
++|||+|||+||.|+++.+..++...++.+. .++||.+...+.. .+. ++++|||+||++|...+..- .
T Consensus 123 ~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-----~ 197 (1171)
T TIGR01054 123 RCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-----G 197 (1171)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-----c
Confidence 8999999999999999999999987776543 5779988765432 333 35999999999999887431 1
Q ss_pred cCceeEEEecchhHhhh-----------cCCHHH-HHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIE-----------NGHFRE-LQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~-----------~~~~~~-l~~i~~~l~ 368 (465)
. .++++||||||+|++ +||... +..+++.++
T Consensus 198 ~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~ 240 (1171)
T TIGR01054 198 P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIR 240 (1171)
T ss_pred C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhh
Confidence 1 899999999999998 677653 666665544
No 53
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.88 E-value=1.1e-22 Score=205.84 Aligned_cols=157 Identities=16% Similarity=0.242 Sum_probs=125.3
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-Cc----eEEEEec---------------CCCHHHHHHHHh
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NV----RVVPIVG---------------GMSTEKQERLLK 310 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~----~v~~~~g---------------g~~~~~~~~~~~ 310 (465)
.+.+.+++++++|+||||+|+|..|.++++.|.+++... .+ ++..-+| +....+....+.
T Consensus 26 ~~~~~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~ 105 (442)
T PF06862_consen 26 DEDEFRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFS 105 (442)
T ss_pred ccchhhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcC
Confidence 456789999999999999999999999999999987641 10 0000111 111112222221
Q ss_pred C------------------------CCcEEEeChHHHHHHHhCC---CccccccCceeEEEecchhHhhhcCCHHHHHHH
Q 012337 311 A------------------------RPELVVGTPGRLWELMSGG---EKHLVELHTLSFFVLDEADRMIENGHFRELQSI 363 (465)
Q Consensus 311 ~------------------------~~dIiV~TP~~L~~~l~~~---~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i 363 (465)
+ .+|||||||.+|..++... ......|++|+++|||.||.|+ ||+|+|+..|
T Consensus 106 GN~DD~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v 184 (442)
T PF06862_consen 106 GNNDDCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHV 184 (442)
T ss_pred CCccceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHH
Confidence 1 2899999999999999752 2334559999999999999998 9999999999
Q ss_pred HHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 364 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 364 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
+++||..|+..|+|||+|+|+||++++++..||||+||+..++..
T Consensus 185 ~~~lN~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~ 229 (442)
T PF06862_consen 185 FEHLNLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEI 229 (442)
T ss_pred HHHhccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHH
Confidence 999999999999999999999999999999999999999997543
No 54
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=9.3e-23 Score=216.85 Aligned_cols=192 Identities=21% Similarity=0.322 Sum_probs=155.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
++|..+..+|..++|.+.+.+.|+|+|||||||||..|+|.||+.+.+.. ..........++|||+|
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-------------~~~~i~k~~fKiVYIaP 172 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-------------EQGDIAKDDFKIVYIAP 172 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-------------cccccccCCceEEEEec
Confidence 56778999999999999999999999999999999999999999886521 11344556789999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc-cccccCceeEEEecchh
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK-HLVELHTLSFFVLDEAD 349 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~-~~~~l~~i~~lViDEah 349 (465)
+++||..+++.+.+-+...|++|..++|++...... -..++|||+||+. |+.+.+... ....++.|++|||||+|
T Consensus 173 mKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEK-wDvvTRk~~~d~~l~~~V~LviIDEVH 248 (1230)
T KOG0952|consen 173 MKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEK-WDVVTRKSVGDSALFSLVRLVIIDEVH 248 (1230)
T ss_pred hHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccc-eeeeeeeeccchhhhhheeeEEeeeeh
Confidence 999999999999998888999999999998775554 2358999999999 666654321 12336889999999999
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhc
Q 012337 350 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 417 (465)
Q Consensus 350 ~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 417 (465)
.|- ...+..|+.|+.++..... ......++|++||||||-.+.+.||+.+
T Consensus 249 lLh-d~RGpvlEtiVaRtlr~ve-----------------ssqs~IRivgLSATlPN~eDvA~fL~vn 298 (1230)
T KOG0952|consen 249 LLH-DDRGPVLETIVARTLRLVE-----------------SSQSMIRIVGLSATLPNYEDVARFLRVN 298 (1230)
T ss_pred hhc-CcccchHHHHHHHHHHHHH-----------------hhhhheEEEEeeccCCCHHHHHHHhcCC
Confidence 776 5688899999877662211 1114689999999999999999999874
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.88 E-value=3e-22 Score=227.48 Aligned_cols=169 Identities=24% Similarity=0.312 Sum_probs=130.7
Q ss_pred EEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHc--------
Q 012337 216 GAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-------- 287 (465)
Q Consensus 216 ~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~-------- 287 (465)
++||||||||++|.||+|+.++....... .......++++|||+|||+|+.|+.+.++..+.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~----------~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~ 70 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDT----------REAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRR 70 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccc----------cccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 57999999999999999999975321000 000112457999999999999999999875221
Q ss_pred ----cCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHH
Q 012337 288 ----GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSI 363 (465)
Q Consensus 288 ----~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i 363 (465)
..++++...+|+++...+.+.+++.++|||+||++|..+|.+. ....|++|++|||||+|.|++..++.++..+
T Consensus 71 ~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~ 148 (1490)
T PRK09751 71 RGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR--ARETLRGVETVIIDEVHAVAGSKRGAHLALS 148 (1490)
T ss_pred cccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh--hhhhhccCCEEEEecHHHhcccccccHHHHH
Confidence 2478999999999998887778888999999999999888642 2245899999999999999976666666666
Q ss_pred HHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhh
Q 012337 364 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 416 (465)
Q Consensus 364 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 416 (465)
+..|...- ..+.|+|+||||+++..++.+||..
T Consensus 149 LeRL~~l~--------------------~~~~QrIgLSATI~n~eevA~~L~g 181 (1490)
T PRK09751 149 LERLDALL--------------------HTSAQRIGLSATVRSASDVAAFLGG 181 (1490)
T ss_pred HHHHHHhC--------------------CCCCeEEEEEeeCCCHHHHHHHhcC
Confidence 65554210 1568999999999999999999853
No 56
>PRK14701 reverse gyrase; Provisional
Probab=99.88 E-value=1.3e-21 Score=225.89 Aligned_cols=150 Identities=21% Similarity=0.256 Sum_probs=118.4
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 012337 183 LLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 261 (465)
Q Consensus 183 ~l~~~l~~-~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (465)
.+.+.+.+ .|| .|+++|+.++|.++ +|+|++++||||||||++++++++.... .
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il-~G~d~li~APTGsGKTl~~~~~al~~~~-----------------------~ 121 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRIL-RGKSFSIVAPTGMGKSTFGAFIALFLAL-----------------------K 121 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHHHHHh-----------------------c
Confidence 34455555 899 69999999999997 6999999999999999966665554321 2
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccC--CceEEEEecCCCHHHHHH---HHhC-CCcEEEeChHHHHHHHhCCCcccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQER---LLKA-RPELVVGTPGRLWELMSGGEKHLV 335 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~--~~~v~~~~gg~~~~~~~~---~~~~-~~dIiV~TP~~L~~~l~~~~~~~~ 335 (465)
++++|||+|||+||.|+++.+..++... ++.+..++|+.+...+.. .+.. .++|||+||++|...+... .
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~ 197 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K 197 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h
Confidence 4589999999999999999999998765 467788899998766533 3333 5899999999998876421 1
Q ss_pred ccCceeEEEecchhHhhh-----------cCCHHHHHH
Q 012337 336 ELHTLSFFVLDEADRMIE-----------NGHFRELQS 362 (465)
Q Consensus 336 ~l~~i~~lViDEah~ll~-----------~~~~~~l~~ 362 (465)
...+++|||||||+|++ +||...+..
T Consensus 198 -~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 198 -HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred -hCCCCEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 26799999999999986 477777653
No 57
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.87 E-value=3.4e-21 Score=207.47 Aligned_cols=171 Identities=21% Similarity=0.299 Sum_probs=128.6
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 012337 183 LLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 261 (465)
Q Consensus 183 ~l~~~l~~-~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (465)
.....|.. +||..|+|+|.++|+.++ +|+|+++++|||+|||++|++|++..
T Consensus 12 ~~~~~l~~~fG~~~~r~~Q~~ai~~il-~g~dvlv~apTGsGKTl~y~lpal~~-------------------------- 64 (607)
T PRK11057 12 LAKQVLQETFGYQQFRPGQQEIIDAVL-SGRDCLVVMPTGGGKSLCYQIPALVL-------------------------- 64 (607)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHc--------------------------
Confidence 33344444 799999999999999987 79999999999999999999998842
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH----HhCCCcEEEeChHHHHH--HHhCCCcccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL----LKARPELVVGTPGRLWE--LMSGGEKHLV 335 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~----~~~~~dIiV~TP~~L~~--~l~~~~~~~~ 335 (465)
...+|||+||++|+.|+++.+..+ ++.+..+.++......... .....+|+++||++|.. ++. .+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-----~l 135 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-----HL 135 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-----HH
Confidence 125999999999999999988765 6777788888776544332 23457899999999863 221 13
Q ss_pred ccCceeEEEecchhHhhhcCC--H---HHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH--
Q 012337 336 ELHTLSFFVLDEADRMIENGH--F---RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA-- 408 (465)
Q Consensus 336 ~l~~i~~lViDEah~ll~~~~--~---~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~-- 408 (465)
....+.+|||||||++.+||+ . ..+..+...+ +..|+++||||++...
T Consensus 136 ~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-------------------------p~~~~v~lTAT~~~~~~~ 190 (607)
T PRK11057 136 AHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-------------------------PTLPFMALTATADDTTRQ 190 (607)
T ss_pred hhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-------------------------CCCcEEEEecCCChhHHH
Confidence 345789999999999998874 2 3344444444 3578999999998643
Q ss_pred HHHHHh
Q 012337 409 DFRKKL 414 (465)
Q Consensus 409 ~~~~~l 414 (465)
++...+
T Consensus 191 di~~~l 196 (607)
T PRK11057 191 DIVRLL 196 (607)
T ss_pred HHHHHh
Confidence 344444
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.87 E-value=4e-21 Score=212.70 Aligned_cols=166 Identities=21% Similarity=0.233 Sum_probs=128.5
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhc-----CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 012337 180 LHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQ-----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 253 (465)
Q Consensus 180 l~~~l~~~l~~-~g~~~p~~iQ~~~i~~~l~~-----~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 253 (465)
....+...+.. ++| .|||+|..+|+.++.. ..|++++|+||||||.+|+++++..+..
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------------- 499 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------------- 499 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---------------
Confidence 34555555544 688 5999999999999742 3699999999999999999999987731
Q ss_pred hhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH---Hh-CCCcEEEeChHHHHHHHhC
Q 012337 254 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-ARPELVVGTPGRLWELMSG 329 (465)
Q Consensus 254 ~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---~~-~~~dIiV~TP~~L~~~l~~ 329 (465)
+++++||+||++||.|+++.|.+++...++++..++|+......... +. +.++||||||.. +..
T Consensus 500 --------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~ 567 (926)
T TIGR00580 500 --------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQK 567 (926)
T ss_pred --------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhC
Confidence 35899999999999999999999988889999999998875544332 33 368999999942 322
Q ss_pred CCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 330 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
...++++.+|||||+|++. ......+..++ ..+|+|+||||+.+
T Consensus 568 ----~v~f~~L~llVIDEahrfg-----v~~~~~L~~~~------------------------~~~~vL~~SATpip 611 (926)
T TIGR00580 568 ----DVKFKDLGLLIIDEEQRFG-----VKQKEKLKELR------------------------TSVDVLTLSATPIP 611 (926)
T ss_pred ----CCCcccCCEEEeecccccc-----hhHHHHHHhcC------------------------CCCCEEEEecCCCH
Confidence 2568899999999999853 22334444444 56899999999753
No 59
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.87 E-value=4.3e-21 Score=206.77 Aligned_cols=166 Identities=22% Similarity=0.388 Sum_probs=128.0
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
+||..|+|+|.++|+.++ +|+|+++++|||+|||++|++|++.. ...+|||+|
T Consensus 9 fg~~~fr~~Q~~~i~~il-~g~dvlv~~PTG~GKTl~y~lpal~~--------------------------~g~~lVisP 61 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVL-DGRDVLVVMPTGGGKSLCYQVPALLL--------------------------KGLTVVISP 61 (591)
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHhHHHHHHHHHc--------------------------CCcEEEEcC
Confidence 899999999999999997 69999999999999999999998742 125899999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH----HhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL----LKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~----~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViD 346 (465)
+++|+.|++..+..+ ++.+..++++.+....... .....+|+++||++|..... ........+.+||||
T Consensus 62 l~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~---~~~l~~~~l~~iViD 134 (591)
T TIGR01389 62 LISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYF---LNMLQRIPIALVAVD 134 (591)
T ss_pred CHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHH---HHHHhcCCCCEEEEe
Confidence 999999999998875 6788888888887654433 23568999999999864221 112345789999999
Q ss_pred chhHhhhcCC--H---HHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH--HHHHHhh
Q 012337 347 EADRMIENGH--F---RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA--DFRKKLK 415 (465)
Q Consensus 347 Eah~ll~~~~--~---~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~--~~~~~l~ 415 (465)
|||++.+||+ . ..+..+...++ ..++|+||||.+... +...+|.
T Consensus 135 EaH~i~~~g~~frp~y~~l~~l~~~~~-------------------------~~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 135 EAHCVSQWGHDFRPEYQRLGSLAERFP-------------------------QVPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred CCcccccccCccHHHHHHHHHHHHhCC-------------------------CCCEEEEEeCCCHHHHHHHHHHcC
Confidence 9999998874 3 33444444443 345999999997543 4555553
No 60
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.86 E-value=5.1e-21 Score=208.35 Aligned_cols=134 Identities=25% Similarity=0.401 Sum_probs=111.4
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHhcC------CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 012337 186 KSIYRLGFKEPTPIQKACIPAAAHQG------KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 259 (465)
Q Consensus 186 ~~l~~~g~~~p~~iQ~~~i~~~l~~~------~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (465)
..+..++| .||++|..+++.++. + .++|++|+||||||++|++|++..+.
T Consensus 253 ~~~~~l~f-~lt~~Q~~ai~~I~~-d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---------------------- 308 (681)
T PRK10917 253 KFLASLPF-ELTGAQKRVVAEILA-DLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---------------------- 308 (681)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHH-hhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----------------------
Confidence 33455778 799999999999864 4 48999999999999999999998773
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHH---HHh-CCCcEEEeChHHHHHHHhCCCcccc
Q 012337 260 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LLK-ARPELVVGTPGRLWELMSGGEKHLV 335 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~---~~~-~~~dIiV~TP~~L~~~l~~~~~~~~ 335 (465)
.+++++|++||++||.|+++.+.+++...++++..++|+.+...... .+. +.++|+||||+.|... .
T Consensus 309 -~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------v 379 (681)
T PRK10917 309 -AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD--------V 379 (681)
T ss_pred -cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc--------c
Confidence 25689999999999999999999999988999999999998654333 333 3599999999877431 4
Q ss_pred ccCceeEEEecchhHhh
Q 012337 336 ELHTLSFFVLDEADRMI 352 (465)
Q Consensus 336 ~l~~i~~lViDEah~ll 352 (465)
.++++.+|||||+|++.
T Consensus 380 ~~~~l~lvVIDE~Hrfg 396 (681)
T PRK10917 380 EFHNLGLVIIDEQHRFG 396 (681)
T ss_pred hhcccceEEEechhhhh
Confidence 57899999999999864
No 61
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=4.4e-21 Score=206.52 Aligned_cols=147 Identities=20% Similarity=0.331 Sum_probs=126.4
Q ss_pred cCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhh
Q 012337 177 ELRLHPLLMKSIY-----RLGFKEP---TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 248 (465)
Q Consensus 177 ~l~l~~~l~~~l~-----~~g~~~p---~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 248 (465)
.|.+...+.+.+. ..||..| +|+|.+++|.++ .+++++++++||+|||++|++|++.+++..
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~-l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------- 135 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIA-MHKGFITEMQTGEGKTLTAVMPLYLNALTG--------- 135 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHhhc---------
Confidence 4567777777766 6799988 999999999997 589999999999999999999999877521
Q ss_pred hhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHH
Q 012337 249 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELM 327 (465)
Q Consensus 249 ~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l 327 (465)
..++||+|||+||.|+++.+..+++.+++++++++||.+...+...+ ++||+||||++| .++|
T Consensus 136 --------------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyL 199 (970)
T PRK12899 136 --------------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYL 199 (970)
T ss_pred --------------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHh
Confidence 13899999999999999999999999999999999999998776555 599999999999 9999
Q ss_pred hCCCcccccc-------CceeEEEecchhHhh
Q 012337 328 SGGEKHLVEL-------HTLSFFVLDEADRMI 352 (465)
Q Consensus 328 ~~~~~~~~~l-------~~i~~lViDEah~ll 352 (465)
..+. ..+ +.+.++||||||.||
T Consensus 200 rd~~---~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 200 RDNS---IATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred hCCC---CCcCHHHhhcccccEEEEechhhhh
Confidence 7542 223 466899999999987
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.85 E-value=1.2e-20 Score=204.11 Aligned_cols=138 Identities=25% Similarity=0.378 Sum_probs=113.6
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHhcC-----CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 012337 183 LLMKSIYRLGFKEPTPIQKACIPAAAHQG-----KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 257 (465)
Q Consensus 183 ~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~-----~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 257 (465)
.+.+.+..++| .||++|..+|+.++..- .+.+++|+||||||++|++|++..+.
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-------------------- 282 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-------------------- 282 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------------------
Confidence 34556677899 79999999999987421 36899999999999999999998763
Q ss_pred CCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHH---HH-hCCCcEEEeChHHHHHHHhCCCcc
Q 012337 258 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LL-KARPELVVGTPGRLWELMSGGEKH 333 (465)
Q Consensus 258 ~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~---~~-~~~~dIiV~TP~~L~~~l~~~~~~ 333 (465)
.+++++|++||++||.|+++.+.+++...+++++.++|+........ .+ .+.++||||||+.|...
T Consensus 283 ---~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~------- 352 (630)
T TIGR00643 283 ---AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK------- 352 (630)
T ss_pred ---cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-------
Confidence 24589999999999999999999999888999999999988755332 22 24589999999887531
Q ss_pred ccccCceeEEEecchhHhh
Q 012337 334 LVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 334 ~~~l~~i~~lViDEah~ll 352 (465)
..+.++.+|||||+|++.
T Consensus 353 -~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 353 -VEFKRLALVIIDEQHRFG 370 (630)
T ss_pred -ccccccceEEEechhhcc
Confidence 457899999999999854
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.85 E-value=2.7e-21 Score=194.65 Aligned_cols=198 Identities=25% Similarity=0.311 Sum_probs=165.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
....+|.|++.+.+.|...|+..+.|+|..++..-|..|.|+++.++|+||||++.-+.-+..++.
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------------- 259 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------------- 259 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--------------
Confidence 457789999999999999999999999999998877799999999999999999998888887764
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHH----HHhCCCcEEEeChHHHHHHHh
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER----LLKARPELVVGTPGRLWELMS 328 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~----~~~~~~dIiV~TP~~L~~~l~ 328 (465)
++.++|||+|..+||+|-+..|..-...+++.+..-+|-.-...... .....+||||+|++++-.+|.
T Consensus 260 --------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLR 331 (830)
T COG1202 260 --------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLR 331 (830)
T ss_pred --------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHH
Confidence 24589999999999999999999988888988877777544432221 122357999999999988887
Q ss_pred CCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 329 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
.+ ..+.+|..|||||+|.|-+...+..+.-++.+|...- +..|+|.+|||+.|+.
T Consensus 332 tg----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~---------------------~~AQ~i~LSATVgNp~ 386 (830)
T COG1202 332 TG----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF---------------------PGAQFIYLSATVGNPE 386 (830)
T ss_pred cC----CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC---------------------CCCeEEEEEeecCChH
Confidence 76 6689999999999998887667667776766665321 4679999999999999
Q ss_pred HHHHHhhhc
Q 012337 409 DFRKKLKHG 417 (465)
Q Consensus 409 ~~~~~l~~~ 417 (465)
++++.|...
T Consensus 387 elA~~l~a~ 395 (830)
T COG1202 387 ELAKKLGAK 395 (830)
T ss_pred HHHHHhCCe
Confidence 999998653
No 64
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.85 E-value=1.8e-20 Score=211.68 Aligned_cols=162 Identities=23% Similarity=0.259 Sum_probs=128.4
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHhcC------CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 012337 183 LLMKSIYRLGFKEPTPIQKACIPAAAHQG------KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 256 (465)
Q Consensus 183 ~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~------~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 256 (465)
...+....++| .||++|.++|+.++. + .|+|+||+||+|||.+|+++++..+.
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~-d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------------------- 647 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLS-DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------------------- 647 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHH-HhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-------------------
Confidence 44555677888 799999999999874 4 79999999999999999988876552
Q ss_pred cCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCc
Q 012337 257 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEK 332 (465)
Q Consensus 257 ~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~ 332 (465)
.+++|+||+||++||.|+++.|...+...++++.+++|+.+...+...+. ..++||||||..| ..
T Consensus 648 ----~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~--- 716 (1147)
T PRK10689 648 ----NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS--- 716 (1147)
T ss_pred ----cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC---
Confidence 24689999999999999999999988777889999999888776655443 4689999999643 22
Q ss_pred cccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 333 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 333 ~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
...++++.+|||||+|++ |+. + ...+..++ ..+|+++||||+.+
T Consensus 717 -~v~~~~L~lLVIDEahrf---G~~-~-~e~lk~l~------------------------~~~qvLl~SATpip 760 (1147)
T PRK10689 717 -DVKWKDLGLLIVDEEHRF---GVR-H-KERIKAMR------------------------ADVDILTLTATPIP 760 (1147)
T ss_pred -CCCHhhCCEEEEechhhc---chh-H-HHHHHhcC------------------------CCCcEEEEcCCCCH
Confidence 145789999999999986 322 2 33445554 57899999999754
No 65
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.82 E-value=2.8e-20 Score=181.64 Aligned_cols=124 Identities=35% Similarity=0.507 Sum_probs=106.8
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccC---CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGI---NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~---~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.|.+||+-|+|+|+.|+++.+.++-.++ .++...++||.....|...+.++.+|+|+||+||.++++.+ ...|
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~l 361 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTL 361 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceee
Confidence 46899999999999999999777664433 46777899999998999999999999999999999999765 4779
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
+.++++|+||||.+|..++-+.|.++...++...... ...|.+++|||+.
T Consensus 362 t~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg------------------~rlq~~vCsatlh 411 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDG------------------FRLQSPVCSATLH 411 (725)
T ss_pred eeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCC------------------cccccceeeeEEe
Confidence 9999999999999998899999999988888554332 5789999999996
No 66
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.81 E-value=1.7e-18 Score=158.73 Aligned_cols=169 Identities=39% Similarity=0.597 Sum_probs=135.6
Q ss_pred CCCCCCcHHHHHHHHHHHhcC-CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc
Q 012337 191 LGFKEPTPIQKACIPAAAHQG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 269 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~-~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 269 (465)
.++..|+++|.+++..++ +. +.++++++||+|||.+++.+++.++... ...++||++
T Consensus 4 ~~~~~~~~~Q~~~~~~~~-~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---------------------~~~~~l~~~ 61 (201)
T smart00487 4 FGFEPLRPYQKEAIEALL-SGLRDVILAAPTGSGKTLAALLPALEALKRG---------------------KGKRVLVLV 61 (201)
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCcEEEECCCCCchhHHHHHHHHHHhccc---------------------CCCcEEEEe
Confidence 456789999999999986 56 8999999999999999999999887421 134799999
Q ss_pred ccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCC-cEEEeChHHHHHHHhCCCccccccCceeEEEecch
Q 012337 270 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARP-ELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 270 Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~-dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEa 348 (465)
||+.++.|+...+..++...........++.........+..+. +|+++|++.|...+.... .....+.++|||||
T Consensus 62 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~ 138 (201)
T smart00487 62 PTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEA 138 (201)
T ss_pred CCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECH
Confidence 99999999999999887654445555666666445555555555 999999999999886532 45678889999999
Q ss_pred hHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 349 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 349 h~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
|.+....+...+..++..++ ...+++++|||+++..
T Consensus 139 h~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~saT~~~~~ 174 (201)
T smart00487 139 HRLLDGGFGDQLEKLLKLLP------------------------KNVQLLLLSATPPEEI 174 (201)
T ss_pred HHHhcCCcHHHHHHHHHhCC------------------------ccceEEEEecCCchhH
Confidence 99985578888888888774 5679999999997544
No 67
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.81 E-value=1.1e-19 Score=198.31 Aligned_cols=173 Identities=21% Similarity=0.278 Sum_probs=143.9
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 012337 187 SIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 266 (465)
Q Consensus 187 ~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 266 (465)
.....+| .|.++|++++-.+ ..+..|++|||||||||++.-..+...+.. +-+++
T Consensus 112 ~~~~~~F-~LD~fQ~~a~~~L-er~esVlV~ApTssGKTvVaeyAi~~al~~-----------------------~qrvi 166 (1041)
T COG4581 112 PAREYPF-ELDPFQQEAIAIL-ERGESVLVCAPTSSGKTVVAEYAIALALRD-----------------------GQRVI 166 (1041)
T ss_pred HHHhCCC-CcCHHHHHHHHHH-hCCCcEEEEccCCCCcchHHHHHHHHHHHc-----------------------CCceE
Confidence 3456788 7999999999665 689999999999999999976666555532 23699
Q ss_pred EEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEec
Q 012337 267 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 346 (465)
Q Consensus 267 il~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViD 346 (465)
|++|.++|.+|.+..|........-.++.++|+... ...+.|+|+|.+.|.+++..+. ..+..+++||+|
T Consensus 167 YTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~---~~~~~i~~ViFD 236 (1041)
T COG4581 167 YTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGS---ESLRDIEWVVFD 236 (1041)
T ss_pred eccchhhhhhhHHHHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCc---ccccccceEEEE
Confidence 999999999999999987754332235666776554 3467899999999999997763 668999999999
Q ss_pred chhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhcc
Q 012337 347 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 418 (465)
Q Consensus 347 Eah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 418 (465)
|+|.|-+...+..++.++-+|| ...|+|+||||++|+.+|..|+....
T Consensus 237 EvHyi~D~eRG~VWEE~Ii~lP------------------------~~v~~v~LSATv~N~~EF~~Wi~~~~ 284 (1041)
T COG4581 237 EVHYIGDRERGVVWEEVIILLP------------------------DHVRFVFLSATVPNAEEFAEWIQRVH 284 (1041)
T ss_pred eeeeccccccchhHHHHHHhcC------------------------CCCcEEEEeCCCCCHHHHHHHHHhcc
Confidence 9999999999999999999998 77899999999999999999998643
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.79 E-value=8.5e-19 Score=185.02 Aligned_cols=150 Identities=20% Similarity=0.179 Sum_probs=113.2
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 194 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
..|+++|.++++.++ .+.+.++++|||+|||+++...+ ..+... ...++|||+||++
T Consensus 113 ~~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l~-~~~~~~---------------------~~~~vLilvpt~e 169 (501)
T PHA02558 113 IEPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLLS-RYYLEN---------------------YEGKVLIIVPTTS 169 (501)
T ss_pred CCCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHH-HHHHhc---------------------CCCeEEEEECcHH
Confidence 489999999999987 57889999999999999865422 222111 1237999999999
Q ss_pred HHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhh
Q 012337 274 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 274 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~ 353 (465)
|+.|+.+.|.+++......+..+.+|.... ...+|+|+||++|..... ..+..+.+|||||||++..
T Consensus 170 L~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~ 236 (501)
T PHA02558 170 LVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTG 236 (501)
T ss_pred HHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccc
Confidence 999999999988654444565666665432 347899999999875431 2467899999999999874
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 354 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 354 ~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
. .+..++..++ +.+|+++||||+...
T Consensus 237 ~----~~~~il~~~~------------------------~~~~~lGLTATp~~~ 262 (501)
T PHA02558 237 K----SLTSIITKLD------------------------NCKFKFGLTGSLRDG 262 (501)
T ss_pred h----hHHHHHHhhh------------------------ccceEEEEeccCCCc
Confidence 3 3566666665 457899999999643
No 69
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.78 E-value=4e-18 Score=187.08 Aligned_cols=154 Identities=21% Similarity=0.202 Sum_probs=116.1
Q ss_pred HHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHH
Q 012337 202 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDH 281 (465)
Q Consensus 202 ~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~ 281 (465)
+.+.. +.+++++|++|+||||||.+|.+++++.+. .++++||+.|||++|.|+++.
T Consensus 9 ~i~~~-l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qiA~r 64 (819)
T TIGR01970 9 ALRDA-LAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------------------IGGKIIMLEPRRLAARSAAQR 64 (819)
T ss_pred HHHHH-HHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------------------cCCeEEEEeCcHHHHHHHHHH
Confidence 34433 457899999999999999999999998651 134899999999999999999
Q ss_pred HHHH-HccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchh-HhhhcCCHH-
Q 012337 282 LKEV-AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD-RMIENGHFR- 358 (465)
Q Consensus 282 l~~l-~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah-~ll~~~~~~- 358 (465)
+... ....+..|++.+++.. ....+++|+|+|||+|.+++.+. ..|+++.+||||||| ++++..+.-
T Consensus 65 va~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ 134 (819)
T TIGR01970 65 LASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLA 134 (819)
T ss_pred HHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHH
Confidence 8644 3445666776666543 23456799999999999998653 569999999999999 577666543
Q ss_pred HHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHh
Q 012337 359 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 414 (465)
Q Consensus 359 ~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l 414 (465)
.+..++..++ ...|+|+||||+... .+.+.+
T Consensus 135 ll~~i~~~lr------------------------~dlqlIlmSATl~~~-~l~~~l 165 (819)
T TIGR01970 135 LALDVQSSLR------------------------EDLKILAMSATLDGE-RLSSLL 165 (819)
T ss_pred HHHHHHHhcC------------------------CCceEEEEeCCCCHH-HHHHHc
Confidence 3345555555 578999999999743 344444
No 70
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.77 E-value=4.1e-18 Score=182.96 Aligned_cols=163 Identities=15% Similarity=0.057 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEcCCCCChhHH---------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012337 198 PIQKACIPAAAHQGKDIIGAAETGSGKTLA---------FGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 268 (465)
Q Consensus 198 ~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~---------~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 268 (465)
.+|.++++.++ .++++|++|+||||||.+ |++|.+..+.+- ......++++|+
T Consensus 167 ~iQ~qil~~i~-~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~-----------------~~~~~~~~ilvt 228 (675)
T PHA02653 167 DVQLKIFEAWI-SRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI-----------------DPNFIERPIVLS 228 (675)
T ss_pred HHHHHHHHHHH-hCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc-----------------ccccCCcEEEEE
Confidence 48899999986 799999999999999998 334444433110 012234589999
Q ss_pred cccHHHHHHHHHHHHHHHcc---CCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEe
Q 012337 269 TPTRELALQVTDHLKEVAKG---INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 345 (465)
Q Consensus 269 ~Ptr~La~Qv~~~l~~l~~~---~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lVi 345 (465)
+|||+||.|+...+...... .+..+...+||... .+........+|+|+|++.. ...|+.+++|||
T Consensus 229 ~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VVI 297 (675)
T PHA02653 229 LPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVII 297 (675)
T ss_pred CcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc----------ccccccCCEEEc
Confidence 99999999999999876543 35677888999873 22223333679999997521 134889999999
Q ss_pred cchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc-HHHHHHh
Q 012337 346 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRKKL 414 (465)
Q Consensus 346 DEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~~~~~l 414 (465)
||||.+..++ +.+..++..+.. ..+|+++||||++.. ..+.+++
T Consensus 298 DEaHEr~~~~--DllL~llk~~~~-----------------------~~rq~ILmSATl~~dv~~l~~~~ 342 (675)
T PHA02653 298 DEVHEHDQIG--DIIIAVARKHID-----------------------KIRSLFLMTATLEDDRDRIKEFF 342 (675)
T ss_pred cccccCccch--hHHHHHHHHhhh-----------------------hcCEEEEEccCCcHhHHHHHHHh
Confidence 9999987665 445555543320 346999999999743 3444444
No 71
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.76 E-value=6.2e-18 Score=185.88 Aligned_cols=150 Identities=22% Similarity=0.241 Sum_probs=113.1
Q ss_pred HHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHH-H
Q 012337 207 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE-V 285 (465)
Q Consensus 207 ~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~-l 285 (465)
.+.+++++|++|+||||||++|.+++++... ...++||+.|||++|.|+++.+.. +
T Consensus 16 ~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------------------~~~~ilvlqPrR~aA~qia~rva~~l 72 (812)
T PRK11664 16 ALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------------------INGKIIMLEPRRLAARNVAQRLAEQL 72 (812)
T ss_pred HHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------------------cCCeEEEECChHHHHHHHHHHHHHHh
Confidence 3457899999999999999999999987531 123899999999999999999864 4
Q ss_pred HccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH-hhhcCC-HHHHHHH
Q 012337 286 AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGH-FRELQSI 363 (465)
Q Consensus 286 ~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~-ll~~~~-~~~l~~i 363 (465)
....+..|++.+++.+. .....+|+|+|||+|.+++..+ ..|+++.+|||||||. .++..+ ..-+..+
T Consensus 73 ~~~~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i 142 (812)
T PRK11664 73 GEKPGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDV 142 (812)
T ss_pred CcccCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHH
Confidence 45567788887777543 2235689999999999998653 5699999999999996 444332 2333455
Q ss_pred HHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHh
Q 012337 364 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKL 414 (465)
Q Consensus 364 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l 414 (465)
+..++ ...|+|+||||++. ..+...+
T Consensus 143 ~~~lr------------------------~~lqlilmSATl~~-~~l~~~~ 168 (812)
T PRK11664 143 QQGLR------------------------DDLKLLIMSATLDN-DRLQQLL 168 (812)
T ss_pred HHhCC------------------------ccceEEEEecCCCH-HHHHHhc
Confidence 55555 57899999999974 3344444
No 72
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=1.6e-18 Score=182.93 Aligned_cols=172 Identities=21% Similarity=0.273 Sum_probs=140.7
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 012337 187 SIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 266 (465)
Q Consensus 187 ~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 266 (465)
.+...+| .|..+|++||-++ ..|..|+|.|+|.+|||+++-.++.-.- ..+.|++
T Consensus 290 ~a~~~pF-elD~FQk~Ai~~l-erg~SVFVAAHTSAGKTvVAEYAialaq-----------------------~h~TR~i 344 (1248)
T KOG0947|consen 290 MALIYPF-ELDTFQKEAIYHL-ERGDSVFVAAHTSAGKTVVAEYAIALAQ-----------------------KHMTRTI 344 (1248)
T ss_pred HHhhCCC-CccHHHHHHHHHH-HcCCeEEEEecCCCCcchHHHHHHHHHH-----------------------hhccceE
Confidence 3445667 7999999999776 5799999999999999998544433221 1245899
Q ss_pred EEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEec
Q 012337 267 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 346 (465)
Q Consensus 267 il~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViD 346 (465)
|.+|-++|.+|-++.|+..+.-.| .++|+... ...+.++|+|.+.|+.+|.++. .-++++++||+|
T Consensus 345 YTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrga---dliRDvE~VIFD 410 (1248)
T KOG0947|consen 345 YTSPIKALSNQKFRDFKETFGDVG----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGA---DLIRDVEFVIFD 410 (1248)
T ss_pred ecchhhhhccchHHHHHHhccccc----eeecceee-------CCCcceEeehHHHHHHHHhccc---chhhccceEEEe
Confidence 999999999999999998765333 66776543 3457899999999999998763 447889999999
Q ss_pred chhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhccccc
Q 012337 347 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKL 421 (465)
Q Consensus 347 Eah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~ 421 (465)
|+|.+-|...+-.++.++-.|| ..+++|++|||+||..+|+.|+.+..-+.
T Consensus 411 EVHYiND~eRGvVWEEViIMlP------------------------~HV~~IlLSATVPN~~EFA~WIGRtK~K~ 461 (1248)
T KOG0947|consen 411 EVHYINDVERGVVWEEVIIMLP------------------------RHVNFILLSATVPNTLEFADWIGRTKQKT 461 (1248)
T ss_pred eeeecccccccccceeeeeecc------------------------ccceEEEEeccCCChHHHHHHhhhccCce
Confidence 9999999888888999999998 78999999999999999999998854443
No 73
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.76 E-value=5.1e-18 Score=178.91 Aligned_cols=164 Identities=23% Similarity=0.224 Sum_probs=127.7
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.++.+|.+.+..+| |+|+|+++|||+|||+++..-+++|+.. .+..++||++||+-|
T Consensus 62 ~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw---------------------~p~~KiVF~aP~~pL 118 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEW---------------------RPKGKVVFLAPTRPL 118 (746)
T ss_pred cccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhc---------------------CCcceEEEeeCCchH
Confidence 78999999999997 9999999999999999999999999842 223589999999999
Q ss_pred HHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhc
Q 012337 275 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~ 354 (465)
+.|+...+..++. +..+....||.........+-...+|+|+||..|.+.|..+... .|+.+.++||||||+-...
T Consensus 119 v~QQ~a~~~~~~~--~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~--~ls~fs~iv~DE~Hra~kn 194 (746)
T KOG0354|consen 119 VNQQIACFSIYLI--PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHD--ELSDFSLIVFDECHRTSKN 194 (746)
T ss_pred HHHHHHHHhhccC--cccceeeccCccCCCchhhhhcccceEEeChHhhhhhccccccc--ccceEEEEEEccccccccc
Confidence 9999977776654 36666677775544444455566899999999999999765422 2899999999999998766
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 355 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 355 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
.-+..|..-+-.++. ...|+|++|||++...
T Consensus 195 ~~Y~~Vmr~~l~~k~-----------------------~~~qILgLTASpG~~~ 225 (746)
T KOG0354|consen 195 HPYNNIMREYLDLKN-----------------------QGNQILGLTASPGSKL 225 (746)
T ss_pred ccHHHHHHHHHHhhh-----------------------ccccEEEEecCCCccH
Confidence 556666643333331 3349999999998543
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.75 E-value=7.3e-17 Score=179.49 Aligned_cols=162 Identities=23% Similarity=0.273 Sum_probs=125.9
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 194 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
-.|+++|.+++..++. + |+|+++|||+|||++|+++++..+. . .+.++|||+||++
T Consensus 14 ~~~r~yQ~~~~~~~l~-~-n~lv~~ptG~GKT~~a~~~i~~~l~-~---------------------~~~~vLvl~Pt~~ 69 (773)
T PRK13766 14 IEARLYQQLLAATALK-K-NTLVVLPTGLGKTAIALLVIAERLH-K---------------------KGGKVLILAPTKP 69 (773)
T ss_pred CCccHHHHHHHHHHhc-C-CeEEEcCCCccHHHHHHHHHHHHHH-h---------------------CCCeEEEEeCcHH
Confidence 3789999999988863 3 9999999999999999999888762 1 2348999999999
Q ss_pred HHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhh
Q 012337 274 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 274 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~ 353 (465)
|+.|+...+..++...+..+..++|+....... .+..+++|+|+||..|...+..+ ...+..+.+|||||||++..
T Consensus 70 L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~ 145 (773)
T PRK13766 70 LVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVG 145 (773)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccc
Confidence 999999999988754455788888888775543 34456799999999998776443 25678999999999999875
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 354 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 354 ~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
...+..+...+...+ +.+++++||||....
T Consensus 146 ~~~~~~i~~~~~~~~------------------------~~~~il~lTaTP~~~ 175 (773)
T PRK13766 146 NYAYVYIAERYHEDA------------------------KNPLVLGLTASPGSD 175 (773)
T ss_pred cccHHHHHHHHHhcC------------------------CCCEEEEEEcCCCCC
Confidence 545555555443333 456899999997543
No 75
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=3.7e-18 Score=176.40 Aligned_cols=161 Identities=23% Similarity=0.301 Sum_probs=137.6
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.+.|+|..+|-.+ .++..|+++|.|.+|||.++-.+|...+... -||||..|-++|
T Consensus 129 ~LDpFQ~~aI~Ci-dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-----------------------QRVIYTSPIKAL 184 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI-DRGESVLVSAHTSAGKTVVAEYAIAMSLREK-----------------------QRVIYTSPIKAL 184 (1041)
T ss_pred ccCchHhhhhhhh-cCCceEEEEeecCCCcchHHHHHHHHHHHhc-----------------------CeEEeeChhhhh
Confidence 7899999999665 7899999999999999999888887777432 389999999999
Q ss_pred HHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhc
Q 012337 275 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~ 354 (465)
.+|-+++|..-++ .|+.++|+.... ..+.++|+|.+.|+.++.+|. --++.+.|||+||+|.|-|.
T Consensus 185 SNQKYREl~~EF~----DVGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIHYMRDk 250 (1041)
T KOG0948|consen 185 SNQKYRELLEEFK----DVGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIHYMRDK 250 (1041)
T ss_pred cchhHHHHHHHhc----ccceeecceeeC-------CCCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeehhcccc
Confidence 9999999987665 466677776543 346799999999999998764 56899999999999999998
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhc
Q 012337 355 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 417 (465)
Q Consensus 355 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 417 (465)
..+-.++.-+-.|| ...+.+++|||+||+.+|+.|++..
T Consensus 251 ERGVVWEETIIllP------------------------~~vr~VFLSATiPNA~qFAeWI~~i 289 (1041)
T KOG0948|consen 251 ERGVVWEETIILLP------------------------DNVRFVFLSATIPNARQFAEWICHI 289 (1041)
T ss_pred ccceeeeeeEEecc------------------------ccceEEEEeccCCCHHHHHHHHHHH
Confidence 88777777777777 7789999999999999999999864
No 76
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.75 E-value=6.9e-17 Score=161.94 Aligned_cols=169 Identities=23% Similarity=0.279 Sum_probs=134.0
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.++.+|......++ .+|+|++.|||-|||+.+++-+.+.+.. +++ ++|+++||+-|
T Consensus 15 e~R~YQ~~i~a~al--~~NtLvvlPTGLGKT~IA~~V~~~~l~~---------------------~~~-kvlfLAPTKPL 70 (542)
T COG1111 15 EPRLYQLNIAAKAL--FKNTLVVLPTGLGKTFIAAMVIANRLRW---------------------FGG-KVLFLAPTKPL 70 (542)
T ss_pred cHHHHHHHHHHHHh--hcCeEEEecCCccHHHHHHHHHHHHHHh---------------------cCC-eEEEecCCchH
Confidence 67889999988886 4699999999999999999988887743 234 89999999999
Q ss_pred HHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhc
Q 012337 275 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~ 354 (465)
+.|.+..|.+.+.-..-.++.++|..........+.. ..|+|+||..+.+-|..+ ..++.++.+||+||||+-...
T Consensus 71 V~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGn 146 (542)
T COG1111 71 VLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGN 146 (542)
T ss_pred HHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCc
Confidence 9999999999987666788999999998877666654 589999999998888655 488999999999999997533
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhh
Q 012337 355 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 415 (465)
Q Consensus 355 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 415 (465)
.-+..|..-+-.-+ +.+.++++|||.+...+-...+.
T Consensus 147 yAYv~Va~~y~~~~------------------------k~~~ilgLTASPGs~~ekI~eV~ 183 (542)
T COG1111 147 YAYVFVAKEYLRSA------------------------KNPLILGLTASPGSDLEKIQEVV 183 (542)
T ss_pred chHHHHHHHHHHhc------------------------cCceEEEEecCCCCCHHHHHHHH
Confidence 33444433332222 56789999999987665444443
No 77
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.74 E-value=6.1e-18 Score=171.53 Aligned_cols=145 Identities=21% Similarity=0.148 Sum_probs=100.3
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCce
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 292 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~ 292 (465)
+++++||||||||++|++|++..+.. ..+.++||++|||+|+.|+++.+..++.. .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---------------------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~ 56 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---------------------QKADRVIIALPTRATINAMYRRAKELFGS---N 56 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---------------------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---c
Confidence 68999999999999999999987532 12458999999999999999999997532 3
Q ss_pred EEEEecCCCHH------------HHHHHH-h-----CCCcEEEeChHHHHHHHhCCCc-cccccC--ceeEEEecchhHh
Q 012337 293 VVPIVGGMSTE------------KQERLL-K-----ARPELVVGTPGRLWELMSGGEK-HLVELH--TLSFFVLDEADRM 351 (465)
Q Consensus 293 v~~~~gg~~~~------------~~~~~~-~-----~~~dIiV~TP~~L~~~l~~~~~-~~~~l~--~i~~lViDEah~l 351 (465)
++.++|+.... ...... . ...+|+|+||+.+...+..... ....+. ..++|||||||.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~ 136 (358)
T TIGR01587 57 LGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFY 136 (358)
T ss_pred cEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCC
Confidence 44444433210 011111 1 2367999999999887764211 111122 2378999999999
Q ss_pred hhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 352 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 352 l~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
.++++ ..+..++..+.. ...|+++||||++
T Consensus 137 ~~~~~-~~l~~~l~~l~~-----------------------~~~~~i~~SATlp 166 (358)
T TIGR01587 137 DEYTL-ALILAVLEVLKD-----------------------NDVPILLMSATLP 166 (358)
T ss_pred CHHHH-HHHHHHHHHHHH-----------------------cCCCEEEEecCch
Confidence 86643 336666665541 3579999999997
No 78
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.73 E-value=1.3e-16 Score=173.56 Aligned_cols=122 Identities=21% Similarity=0.296 Sum_probs=99.8
Q ss_pred CCcHHHHHHHHHHHhc--CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 195 EPTPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~--~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
.|++.|++++..++.. +.+++++|+||||||.+|+.++...+. .+.++|||+||+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-----------------------~g~~vLvLvPt~ 200 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-----------------------QGKQALVLVPEI 200 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----------------------cCCeEEEEeCcH
Confidence 6899999999998742 578999999999999999888776652 134799999999
Q ss_pred HHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecch
Q 012337 273 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 273 ~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEa 348 (465)
+|+.|+++.|.+.+ +.++..++|+.+...+...+ .+.++|+||||+.+. ..++++.+|||||+
T Consensus 201 ~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEe 267 (679)
T PRK05580 201 ALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEE 267 (679)
T ss_pred HHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECC
Confidence 99999999998764 67899999998875543332 346899999998763 34788999999999
Q ss_pred hHhh
Q 012337 349 DRMI 352 (465)
Q Consensus 349 h~ll 352 (465)
|...
T Consensus 268 h~~s 271 (679)
T PRK05580 268 HDSS 271 (679)
T ss_pred Cccc
Confidence 9654
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.72 E-value=4.5e-17 Score=173.71 Aligned_cols=133 Identities=27% Similarity=0.381 Sum_probs=109.6
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
+|+ .|+++|..+.+.+ +.|+ |+.++||+|||++|++|++-..+. +.+|+|++|
T Consensus 53 lg~-~p~~vQlig~~~l-~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------------------G~~V~VvTp 105 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL-HKGK--IAEMKTGEGKTLTATLPAYLNALT-----------------------GKGVHVVTV 105 (745)
T ss_pred hCC-CccchHHhhhhhh-cCCc--eeeecCCCccHHHHHHHHHHHHHh-----------------------CCCEEEEcC
Confidence 566 7999999998776 4565 999999999999999999543321 236999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCC---ccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~i~~lViD 346 (465)
|+.||.|.++.+..++..+|+++++++|+.+...+.... .++|+||||++| .++|..+. .....++.+.++|||
T Consensus 106 t~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIID 183 (745)
T TIGR00963 106 NDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIID 183 (745)
T ss_pred CHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEee
Confidence 999999999999999999999999999999876544433 489999999999 88886531 112457899999999
Q ss_pred chhHhh
Q 012337 347 EADRMI 352 (465)
Q Consensus 347 Eah~ll 352 (465)
|||+|+
T Consensus 184 EaDs~L 189 (745)
T TIGR00963 184 EVDSIL 189 (745)
T ss_pred cHHHHh
Confidence 999987
No 80
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.72 E-value=7e-17 Score=163.38 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhcCC--cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHH
Q 012337 199 IQKACIPAAAHQGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276 (465)
Q Consensus 199 iQ~~~i~~~l~~~~--dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~ 276 (465)
+|.++++.+.. +. +++++||||||||.+|++|++.. ..++||++||++|+.
T Consensus 1 hQ~~~~~~~~~-~~~~~~~i~apTGsGKT~~~~~~~l~~--------------------------~~~~~~~~P~~aL~~ 53 (357)
T TIGR03158 1 HQVATFEALQS-KDADIIFNTAPTGAGKTLAWLTPLLHG--------------------------ENDTIALYPTNALIE 53 (357)
T ss_pred CHHHHHHHHHc-CCCCEEEEECCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeChHHHHH
Confidence 48999999864 54 37889999999999999998842 125899999999999
Q ss_pred HHHHHHHHHHccC----CceEEEEecCCCHHH--------------------HHHHHhCCCcEEEeChHHHHHHHhCCCc
Q 012337 277 QVTDHLKEVAKGI----NVRVVPIVGGMSTEK--------------------QERLLKARPELVVGTPGRLWELMSGGEK 332 (465)
Q Consensus 277 Qv~~~l~~l~~~~----~~~v~~~~gg~~~~~--------------------~~~~~~~~~dIiV~TP~~L~~~l~~~~~ 332 (465)
|+++.+..++... ++.+..+.|...... +.......++|+++||..|..++.....
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~ 133 (357)
T TIGR03158 54 DQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYI 133 (357)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhcc
Confidence 9999999987533 455666666422210 0011123688999999999776643211
Q ss_pred -----cccccCceeEEEecchhHhhh
Q 012337 333 -----HLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 333 -----~~~~l~~i~~lViDEah~ll~ 353 (465)
....+.++.+|||||+|.+-.
T Consensus 134 ~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 134 DRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred CcccchhhhhcCCCEEEEecccccCc
Confidence 112368999999999998753
No 81
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=1e-16 Score=170.12 Aligned_cols=133 Identities=25% Similarity=0.302 Sum_probs=108.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+ .|+++|..++|.++ .|+ |+.+.||+|||++|++|++.+.+ .+++|+||+|
T Consensus 100 lg~-~p~~VQ~~~~~~ll-~G~--Iae~~TGeGKTla~~lp~~~~al-----------------------~G~~v~VvTp 152 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALL-SGR--LAEMQTGEGKTLTATLPAGTAAL-----------------------AGLPVHVITV 152 (656)
T ss_pred hCC-CCChHHHHHHHHHh-CCC--eeeeeCCCCcHHHHHHHHHHHhh-----------------------cCCeEEEEcC
Confidence 566 79999999999986 687 99999999999999999998763 3568999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCC------------------
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE------------------ 331 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~------------------ 331 (465)
|++||.|.++.+..++..+++++++++||.+.. .+....++||+|||..-| .+.|...-
T Consensus 153 treLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~ 230 (656)
T PRK12898 153 NDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHG 230 (656)
T ss_pred cHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhcc
Confidence 999999999999999999999999999998753 344456799999999887 44443221
Q ss_pred ----ccccccCceeEEEecchhHhh
Q 012337 332 ----KHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 332 ----~~~~~l~~i~~lViDEah~ll 352 (465)
.....+..+.+.||||||.+|
T Consensus 231 ~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 231 RSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred ccCchhhhcccccceeEeeccccee
Confidence 011224678899999999865
No 82
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.9e-16 Score=171.41 Aligned_cols=134 Identities=21% Similarity=0.317 Sum_probs=108.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+ .|+++|..+++.+ +.|+ |+.+.||+|||++|++|++...+ .+++|+|++|
T Consensus 75 ~g~-~p~~vQl~~~~~l-~~G~--Iaem~TGeGKTL~a~lp~~l~al-----------------------~G~~v~VvTp 127 (790)
T PRK09200 75 LGM-RPYDVQLIGALVL-HEGN--IAEMQTGEGKTLTATMPLYLNAL-----------------------EGKGVHLITV 127 (790)
T ss_pred hCC-CCchHHHHhHHHH-cCCc--eeeecCCCcchHHHHHHHHHHHH-----------------------cCCCeEEEeC
Confidence 577 8999999999876 4665 99999999999999999986553 2558999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCC---ccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~i~~lViD 346 (465)
|+.||.|.+..+..++..+|+++++++|+.+...+.+. ..++||+||||++| .++|...- .....++.+.++|||
T Consensus 128 t~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvD 206 (790)
T PRK09200 128 NDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIID 206 (790)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEe
Confidence 99999999999999999999999999999984333333 34689999999999 55554321 112346889999999
Q ss_pred chhHhh
Q 012337 347 EADRMI 352 (465)
Q Consensus 347 Eah~ll 352 (465)
|||.||
T Consensus 207 EaDsiL 212 (790)
T PRK09200 207 EIDSIL 212 (790)
T ss_pred ccccce
Confidence 999976
No 83
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.69 E-value=6.3e-16 Score=161.20 Aligned_cols=172 Identities=25% Similarity=0.392 Sum_probs=132.4
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 012337 186 KSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 264 (465)
Q Consensus 186 ~~l~~-~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (465)
..|.. +||..+.+-|.++|..++ +++|+++..|||.||++||.+|++-. .| -
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l-~g~d~lvvmPTGgGKSlCyQiPAll~-------------------------~G-~ 59 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALL-SGKDTLVVMPTGGGKSLCYQIPALLL-------------------------EG-L 59 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHH-cCCcEEEEccCCCCcchHhhhHHHhc-------------------------CC-C
Confidence 33444 789999999999999987 79999999999999999999998742 12 4
Q ss_pred EEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccCce
Q 012337 265 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTL 340 (465)
Q Consensus 265 vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i 340 (465)
+|||+|..+|+..+++.+... |+.+.++.+..+.......+ ....+|++-+|++|..--. ...+.--.+
T Consensus 60 TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f---~~~L~~~~i 132 (590)
T COG0514 60 TLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRF---LELLKRLPI 132 (590)
T ss_pred EEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHH---HHHHHhCCC
Confidence 999999999999999999876 78999999998776554433 2357999999999854211 011224578
Q ss_pred eEEEecchhHhhhcC--C---HHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc--HHHHHH
Q 012337 341 SFFVLDEADRMIENG--H---FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADFRKK 413 (465)
Q Consensus 341 ~~lViDEah~ll~~~--~---~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~~~~ 413 (465)
.++|||||||+.+|| | +..+..+...++ ..+++.+|||-+.. .+....
T Consensus 133 ~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-------------------------~~p~~AlTATA~~~v~~DI~~~ 187 (590)
T COG0514 133 SLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-------------------------NPPVLALTATATPRVRDDIREQ 187 (590)
T ss_pred ceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-------------------------CCCEEEEeCCCChHHHHHHHHH
Confidence 899999999999998 4 555666666664 46799999998754 255555
Q ss_pred hhh
Q 012337 414 LKH 416 (465)
Q Consensus 414 l~~ 416 (465)
|..
T Consensus 188 L~l 190 (590)
T COG0514 188 LGL 190 (590)
T ss_pred hcC
Confidence 544
No 84
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.68 E-value=1.8e-15 Score=130.48 Aligned_cols=144 Identities=42% Similarity=0.599 Sum_probs=108.5
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCc
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 291 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~ 291 (465)
+++++.++||+|||.+++..+...... ....++||++|++.++.|+...+...... +.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---------------------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~ 58 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---------------------LKGGQVLVLAPTRELANQVAERLKELFGE-GI 58 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---------------------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-Cc
Confidence 468999999999999998888776532 12458999999999999999999888765 67
Q ss_pred eEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCC
Q 012337 292 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 371 (465)
Q Consensus 292 ~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~ 371 (465)
.+..+.++..............+|+|+|+..+...+.... .....+.+|||||+|.+...........+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~--- 132 (144)
T cd00046 59 KVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP--- 132 (144)
T ss_pred EEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCC---
Confidence 7888888777666555566789999999999988775432 3356788999999999986544333211222222
Q ss_pred CCCCCCcccccchhccccccCCCceEEEEeeec
Q 012337 372 GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 404 (465)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 404 (465)
...+++++|||+
T Consensus 133 ---------------------~~~~~i~~saTp 144 (144)
T cd00046 133 ---------------------KDRQVLLLSATP 144 (144)
T ss_pred ---------------------ccceEEEEeccC
Confidence 567899999995
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=3.8e-16 Score=168.92 Aligned_cols=133 Identities=24% Similarity=0.339 Sum_probs=108.1
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|. .|+++|.-.--. |++|+ |+.++||+|||++|++|++..++. +..|+||+|
T Consensus 79 lg~-~~ydvQliGg~~-Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~-----------------------G~~V~VvTp 131 (896)
T PRK13104 79 LGL-RHFDVQLIGGMV-LHEGN--IAEMRTGEGKTLVATLPAYLNAIS-----------------------GRGVHIVTV 131 (896)
T ss_pred cCC-CcchHHHhhhhh-hccCc--cccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEcC
Confidence 555 788899777644 45555 889999999999999999977642 235999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCCcc-c--cccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEKH-L--VELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~~~-~--~~l~~i~~lViD 346 (465)
|++||.|.++.+..++..+|+.+.+++||.+...+.... .+||+||||++| .++|..+... . ...+.+.++|||
T Consensus 132 n~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvD 209 (896)
T PRK13104 132 NDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVD 209 (896)
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEec
Confidence 999999999999999999999999999999887665444 589999999999 8888754110 0 113689999999
Q ss_pred chhHhh
Q 012337 347 EADRMI 352 (465)
Q Consensus 347 Eah~ll 352 (465)
|||.||
T Consensus 210 EaDsiL 215 (896)
T PRK13104 210 EVDSIL 215 (896)
T ss_pred cHhhhh
Confidence 999977
No 86
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.68 E-value=2.2e-16 Score=169.39 Aligned_cols=135 Identities=24% Similarity=0.306 Sum_probs=101.3
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|. .|+++|...+..+ ++| .|+.++||+|||++|++|++.+.+ .++.|+||+|
T Consensus 67 lgl-rpydVQlig~l~l-~~G--~Iaem~TGeGKTLta~Lpa~l~aL-----------------------~g~~V~VVTp 119 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVL-HQG--NIAEMKTGEGKTLTATMPLYLNAL-----------------------TGKGAMLVTT 119 (762)
T ss_pred cCC-CccHHHHHHHHHh-cCC--ceeEecCCcchHHHHHHHHHHHhh-----------------------cCCceEEeCC
Confidence 455 5666666666543 344 799999999999999999876653 2346999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCC---HHHHHHHHhCCCcEEEeChHHH-HHHHhCC---CccccccCceeEE
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMS---TEKQERLLKARPELVVGTPGRL-WELMSGG---EKHLVELHTLSFF 343 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~---~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~---~~~~~~l~~i~~l 343 (465)
|++||.|+++.+..++..+|+.+.+++++.. .....+....+++|++|||++| .+.|... ......++.+.++
T Consensus 120 n~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~ 199 (762)
T TIGR03714 120 NDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYV 199 (762)
T ss_pred CHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEE
Confidence 9999999999999999999999998887622 2222333445799999999999 4444221 1122447889999
Q ss_pred EecchhHhh
Q 012337 344 VLDEADRMI 352 (465)
Q Consensus 344 ViDEah~ll 352 (465)
||||||.||
T Consensus 200 IVDEaDsIL 208 (762)
T TIGR03714 200 IVDEVDSVL 208 (762)
T ss_pred EEecHhhHh
Confidence 999999986
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=1.8e-16 Score=171.36 Aligned_cols=247 Identities=18% Similarity=0.234 Sum_probs=170.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 012337 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 259 (465)
Q Consensus 180 l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (465)
++.+-..++ .|+..+.++|..+.+.++....++++|||||+|||..+++-+|+.+-...... +.-.
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~d------------gs~n 361 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLRED------------GSVN 361 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccc------------ccee
Confidence 334444333 35567999999999999877789999999999999999999999885432211 1112
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCc
Q 012337 260 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 339 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 339 (465)
....+++|++|+.+||..++..|.+.....|+.|.-++|......+. .....||||||+. ++.+.+........+-
T Consensus 362 l~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK-~DiITRk~gdraY~ql 437 (1674)
T KOG0951|consen 362 LAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEK-WDIITRKSGDRAYEQL 437 (1674)
T ss_pred cccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccch-hhhhhcccCchhHHHH
Confidence 34568999999999999999999999999999999999987643321 1357899999999 6777654322233556
Q ss_pred eeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhc--
Q 012337 340 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG-- 417 (465)
Q Consensus 340 i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~-- 417 (465)
++++||||.|.+. ...+..++.|..+........ ...++++++||||||-.+....|...
T Consensus 438 vrLlIIDEIHLLh-DdRGpvLESIVaRt~r~ses~-----------------~e~~RlVGLSATLPNy~DV~~Fl~v~~~ 499 (1674)
T KOG0951|consen 438 VRLLIIDEIHLLH-DDRGPVLESIVARTFRRSEST-----------------EEGSRLVGLSATLPNYEDVASFLRVDPE 499 (1674)
T ss_pred HHHHhhhhhhhcc-cccchHHHHHHHHHHHHhhhc-----------------ccCceeeeecccCCchhhhHHHhccCcc
Confidence 7899999999665 557788888776655322111 15689999999999988777755432
Q ss_pred -------ccccccccC-----------------ccccHHHHHHHhCccccceEEecCc-hHhHhhhhhhh
Q 012337 418 -------SLKLKQSVN-----------------GLNSIETLSERAGMRANVAIVDLTN-VSVLANKLEES 462 (465)
Q Consensus 418 -------~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~iidl~~-~~~~~~~l~e~ 462 (465)
+++..+... +.-.++.+++.+|--+-..||-..+ ...+|..|+..
T Consensus 500 glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~ 569 (1674)
T KOG0951|consen 500 GLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDK 569 (1674)
T ss_pred cccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHH
Confidence 122222210 1133455677777644344444444 34777777654
No 88
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.62 E-value=7.3e-15 Score=143.93 Aligned_cols=165 Identities=25% Similarity=0.388 Sum_probs=125.4
Q ss_pred HHHHHHHH-CCCCCC-cHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCC
Q 012337 183 LLMKSIYR-LGFKEP-TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 260 (465)
Q Consensus 183 ~l~~~l~~-~g~~~p-~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 260 (465)
.+..+|++ +|+..+ +++|.+++..++...+||++++|||+||++||.||.|-+-
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~------------------------ 61 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG------------------------ 61 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC------------------------
Confidence 35566655 566543 7999999999998889999999999999999999998642
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH------hCCCcEEEeChHHHH-----HHHhC
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL------KARPELVVGTPGRLW-----ELMSG 329 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~------~~~~dIiV~TP~~L~-----~~l~~ 329 (465)
+ ..||+.|..+|...+.++|..+ .+.+-.+.+..+..+..+.+ +....|+..||++-. .+|+.
T Consensus 62 -g-ITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~ 135 (641)
T KOG0352|consen 62 -G-ITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG 135 (641)
T ss_pred -C-eEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH
Confidence 2 6899999999999999999886 56676777777766555443 235679999998753 22221
Q ss_pred CCccccccCceeEEEecchhHhhhcCC-----HHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeec
Q 012337 330 GEKHLVELHTLSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATI 404 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEah~ll~~~~-----~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl 404 (465)
...-+-+.++||||||++..||+ +-.+..+...++ ...-|.++||.
T Consensus 136 ----L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~-------------------------~vpwvALTATA 186 (641)
T KOG0352|consen 136 ----LANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP-------------------------GVPWVALTATA 186 (641)
T ss_pred ----HhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC-------------------------CCceEEeeccc
Confidence 12235689999999999999986 455566666654 45678899998
Q ss_pred cC
Q 012337 405 AL 406 (465)
Q Consensus 405 ~~ 406 (465)
+.
T Consensus 187 ~~ 188 (641)
T KOG0352|consen 187 NA 188 (641)
T ss_pred Ch
Confidence 64
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=1.7e-14 Score=151.68 Aligned_cols=102 Identities=23% Similarity=0.297 Sum_probs=79.0
Q ss_pred EEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEE
Q 012337 215 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 294 (465)
Q Consensus 215 l~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~ 294 (465)
|+.|+||||||.+|+..+...+ . .+.++|||+|+++|+.|+++.|.+.+ +..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~----------------------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~ 54 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A----------------------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVA 54 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H----------------------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEE
Confidence 4689999999999976554443 1 13479999999999999999998764 56788
Q ss_pred EEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhh
Q 012337 295 PIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 295 ~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll 352 (465)
.++|+.+.......+ ...++|||||+..|. ..++++.+|||||+|...
T Consensus 55 vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~s 106 (505)
T TIGR00595 55 VLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSS 106 (505)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccc
Confidence 899998765543332 245799999998763 347889999999999765
No 90
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.57 E-value=3.3e-14 Score=129.45 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHHh------cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012337 195 EPTPIQKACIPAAAH------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 268 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~------~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 268 (465)
.|+++|.+++..++. .+..+++.+|||||||.+++..+.... . ++||+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-------------------------~-~~l~~ 56 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-------------------------R-KVLIV 56 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-------------------------C-EEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-------------------------c-ceeEe
Confidence 578999999988863 268999999999999999886555443 1 79999
Q ss_pred cccHHHHHHHHHHHHHHHccCCceEEE-----------EecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc-----
Q 012337 269 TPTRELALQVTDHLKEVAKGINVRVVP-----------IVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK----- 332 (465)
Q Consensus 269 ~Ptr~La~Qv~~~l~~l~~~~~~~v~~-----------~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~----- 332 (465)
+|+..|+.|+.+.+..+.......... ..................+|+++|...|...+.....
T Consensus 57 ~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~ 136 (184)
T PF04851_consen 57 APNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESA 136 (184)
T ss_dssp ESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH--------
T ss_pred cCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccch
Confidence 999999999999996664321111000 0011111122223345678999999999887653211
Q ss_pred ---cccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 333 ---HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 333 ---~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
.........+||+||||++....-|..+.. . ....+|+||||..
T Consensus 137 ~~~~~~~~~~~~~vI~DEaH~~~~~~~~~~i~~----~-------------------------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 137 RRSYKLLKNKFDLVIIDEAHHYPSDSSYREIIE----F-------------------------KAAFILGLTATPF 183 (184)
T ss_dssp -GCHHGGGGSESEEEEETGGCTHHHHHHHHHHH----S-------------------------SCCEEEEEESS-S
T ss_pred hhhhhhccccCCEEEEehhhhcCCHHHHHHHHc----C-------------------------CCCeEEEEEeCcc
Confidence 112345678999999998874433444433 1 4567999999974
No 91
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.57 E-value=1.9e-14 Score=161.86 Aligned_cols=151 Identities=23% Similarity=0.252 Sum_probs=98.7
Q ss_pred HHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc----cHHHHHHHH
Q 012337 204 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP----TRELALQVT 279 (465)
Q Consensus 204 i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P----tr~La~Qv~ 279 (465)
|..++.+++.++++|+||||||.. +|.+-.-. +. .....+++.-| +++||.||+
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~------------------g~--g~~g~I~~TQPRRlAArsLA~RVA 139 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTTQ--LPKICLEL------------------GR--GVKGLIGHTQPRRLAARTVANRIA 139 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHc------------------CC--CCCCceeeCCCcHHHHHHHHHHHH
Confidence 444455677889999999999984 66332210 00 11112333345 568999999
Q ss_pred HHHHH-HHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchh-HhhhcCCH
Q 012337 280 DHLKE-VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD-RMIENGHF 357 (465)
Q Consensus 280 ~~l~~-l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah-~ll~~~~~ 357 (465)
+++.. ++...|+.+ .. ......+++|+|||||+|++.+..+ ..|+++++||||||| ++++++|.
T Consensus 140 ~El~~~lG~~VGY~v----rf------~~~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfL 205 (1294)
T PRK11131 140 EELETELGGCVGYKV----RF------NDQVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFI 205 (1294)
T ss_pred HHHhhhhcceeceee----cC------ccccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchH
Confidence 88875 444344433 11 1122457899999999999998653 459999999999999 58888875
Q ss_pred HHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhh
Q 012337 358 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 415 (465)
Q Consensus 358 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 415 (465)
.. .+...++.. +..|+|+||||+. ...|.+.+.
T Consensus 206 Lg--~Lk~lL~~r----------------------pdlKvILmSATid-~e~fs~~F~ 238 (1294)
T PRK11131 206 LG--YLKELLPRR----------------------PDLKVIITSATID-PERFSRHFN 238 (1294)
T ss_pred HH--HHHHhhhcC----------------------CCceEEEeeCCCC-HHHHHHHcC
Confidence 32 233333311 3579999999996 456666653
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=2e-14 Score=155.49 Aligned_cols=132 Identities=23% Similarity=0.334 Sum_probs=108.5
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHH-HHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIM-QRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 269 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 269 (465)
.|+ .|+++|.-..- +|++|+ |+.++||+|||+++.+|++ +.+. +..|-|++
T Consensus 78 lg~-~~~dvQlig~l-~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~------------------------G~~V~IvT 129 (830)
T PRK12904 78 LGM-RHFDVQLIGGM-VLHEGK--IAEMKTGEGKTLVATLPAYLNALT------------------------GKGVHVVT 129 (830)
T ss_pred hCC-CCCccHHHhhH-HhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc------------------------CCCEEEEe
Confidence 566 78999988774 446665 8899999999999999996 5541 22478999
Q ss_pred ccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCCc---cccccCceeEEEe
Q 012337 270 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVL 345 (465)
Q Consensus 270 Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~~---~~~~l~~i~~lVi 345 (465)
||+.||.|.++.+..++..+|+.+++++|+.+...+.... .+||+++||++| .++|..... ....++.+.++||
T Consensus 130 pn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIv 207 (830)
T PRK12904 130 VNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIV 207 (830)
T ss_pred cCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEE
Confidence 9999999999999999999999999999999987766654 489999999999 888865421 1124688999999
Q ss_pred cchhHhh
Q 012337 346 DEADRMI 352 (465)
Q Consensus 346 DEah~ll 352 (465)
||||.||
T Consensus 208 DEaDsiL 214 (830)
T PRK12904 208 DEVDSIL 214 (830)
T ss_pred echhhhe
Confidence 9999977
No 93
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.51 E-value=1e-13 Score=152.57 Aligned_cols=172 Identities=23% Similarity=0.292 Sum_probs=129.5
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 012337 187 SIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 266 (465)
Q Consensus 187 ~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 266 (465)
....+|+..+++-|.++|..++ .|+|+++..|||.||++||.||++-. ++..|
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l-~Gkd~fvlmpTG~GKSLCYQlPA~l~--------------------------~gitv 308 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATL-SGKDCFVLMPTGGGKSLCYQLPALLL--------------------------GGVTV 308 (941)
T ss_pred HHHHhccccCChhHHHHHHHHH-cCCceEEEeecCCceeeEeecccccc--------------------------CCceE
Confidence 3345899999999999999776 79999999999999999999998631 23789
Q ss_pred EEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH---Hh-C--CCcEEEeChHHHHHHHhCCCccccccCc-
Q 012337 267 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-A--RPELVVGTPGRLWELMSGGEKHLVELHT- 339 (465)
Q Consensus 267 il~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---~~-~--~~dIiV~TP~~L~~~l~~~~~~~~~l~~- 339 (465)
||.|.+.|+..+...+... ++....+.++.....+... +. + ..+|+..||+.+...-.- ......|..
T Consensus 309 VISPL~SLm~DQv~~L~~~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l-~~~~~~L~~~ 383 (941)
T KOG0351|consen 309 VISPLISLMQDQVTHLSKK----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGL-LESLADLYAR 383 (941)
T ss_pred EeccHHHHHHHHHHhhhhc----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccch-hhHHHhccCC
Confidence 9999999999988888443 7888899998887543322 22 3 479999999998542210 111233555
Q ss_pred --eeEEEecchhHhhhcCC-----HHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc--HHH
Q 012337 340 --LSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS--ADF 410 (465)
Q Consensus 340 --i~~lViDEah~ll~~~~-----~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~--~~~ 410 (465)
+.++||||||++..||+ +.++..+....+ .+.+|.+|||.+.. .+.
T Consensus 384 ~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~-------------------------~vP~iALTATAT~~v~~DI 438 (941)
T KOG0351|consen 384 GLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP-------------------------GVPFIALTATATERVREDV 438 (941)
T ss_pred CeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC-------------------------CCCeEEeehhccHHHHHHH
Confidence 89999999999999986 555555555554 36899999999643 355
Q ss_pred HHHhh
Q 012337 411 RKKLK 415 (465)
Q Consensus 411 ~~~l~ 415 (465)
+..|+
T Consensus 439 i~~L~ 443 (941)
T KOG0351|consen 439 IRSLG 443 (941)
T ss_pred HHHhC
Confidence 66554
No 94
>PRK09694 helicase Cas3; Provisional
Probab=99.51 E-value=1.3e-13 Score=151.92 Aligned_cols=165 Identities=17% Similarity=0.122 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 194 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
..|+|+|..+.... .++.-+|+.||||+|||.++++.+...+ .. ....+++|.+||++
T Consensus 285 ~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~-~~--------------------~~~~gi~~aLPT~A 342 (878)
T PRK09694 285 YQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLI-DQ--------------------GLADSIIFALPTQA 342 (878)
T ss_pred CCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHH-Hh--------------------CCCCeEEEECcHHH
Confidence 38999999886433 2466789999999999999877655332 21 12347999999999
Q ss_pred HHHHHHHHHHHHHccC--CceEEEEecCCCHHHHH---------------------HHHh---C---CCcEEEeChHHHH
Q 012337 274 LALQVTDHLKEVAKGI--NVRVVPIVGGMSTEKQE---------------------RLLK---A---RPELVVGTPGRLW 324 (465)
Q Consensus 274 La~Qv~~~l~~l~~~~--~~~v~~~~gg~~~~~~~---------------------~~~~---~---~~dIiV~TP~~L~ 324 (465)
+++|++.++..++... ...+...+|........ ..+. . -.+|+|||...++
T Consensus 343 tan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL 422 (878)
T PRK09694 343 TANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVL 422 (878)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHH
Confidence 9999999998755432 34577777765422110 1111 1 2689999999887
Q ss_pred HHHhCCCccccccCc----eeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEE
Q 012337 325 ELMSGGEKHLVELHT----LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 400 (465)
Q Consensus 325 ~~l~~~~~~~~~l~~----i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 400 (465)
..+-.... ..++. -++|||||+|.+ +..+...+..++..+.. ....+|+|
T Consensus 423 ~a~l~~kh--~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~-----------------------~g~~vIll 476 (878)
T PRK09694 423 ISVLPVKH--RFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ-----------------------AGGSVILL 476 (878)
T ss_pred HHHHccch--HHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHh-----------------------cCCcEEEE
Confidence 65543211 12222 248999999987 44455566666666542 35679999
Q ss_pred eeeccC
Q 012337 401 SATIAL 406 (465)
Q Consensus 401 SATl~~ 406 (465)
|||+|.
T Consensus 477 SATLP~ 482 (878)
T PRK09694 477 SATLPA 482 (878)
T ss_pred eCCCCH
Confidence 999974
No 95
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=2.2e-13 Score=147.33 Aligned_cols=133 Identities=18% Similarity=0.245 Sum_probs=105.5
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|. .|+++|.-.--. |++|+ |+.++||.|||++|.+|++.+.+. +..|.||+|
T Consensus 79 lgm-~~ydVQliGgl~-L~~G~--IaEm~TGEGKTL~a~lp~~l~al~-----------------------g~~VhIvT~ 131 (908)
T PRK13107 79 FEM-RHFDVQLLGGMV-LDSNR--IAEMRTGEGKTLTATLPAYLNALT-----------------------GKGVHVITV 131 (908)
T ss_pred hCC-CcCchHHhcchH-hcCCc--cccccCCCCchHHHHHHHHHHHhc-----------------------CCCEEEEeC
Confidence 555 788899766533 45554 889999999999999999876642 335999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCCc---cccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGEK---HLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~~---~~~~l~~i~~lViD 346 (465)
++.||.|.++.+..++..+|+.|.+++++.+...... .-.+||++|||+.| .++|..+-. .....+.+.++|||
T Consensus 132 ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvD 209 (908)
T PRK13107 132 NDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALID 209 (908)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeec
Confidence 9999999999999999999999999999988743322 22689999999999 888865411 11124788999999
Q ss_pred chhHhh
Q 012337 347 EADRMI 352 (465)
Q Consensus 347 Eah~ll 352 (465)
|||.||
T Consensus 210 EvDsiL 215 (908)
T PRK13107 210 EVDSIL 215 (908)
T ss_pred chhhhc
Confidence 999977
No 96
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=3.1e-13 Score=145.31 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=104.2
Q ss_pred CCcHHHHHHHHHHHhcCC--cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 195 EPTPIQKACIPAAAHQGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~--dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
.|+|+|.+++..++.+++ ..++++|||+|||++.+..+. .+ +.++|||||+.
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-------------------------~k~tLILvps~ 308 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-------------------------KKSCLVLCTSA 308 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-------------------------CCCEEEEeCcH
Confidence 689999999999886663 789999999999999765443 22 12599999999
Q ss_pred HHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc-----cccccCceeEEEecc
Q 012337 273 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK-----HLVELHTLSFFVLDE 347 (465)
Q Consensus 273 ~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~-----~~~~l~~i~~lViDE 347 (465)
.|+.|+.+.|.+++......+..++|+.... ......|+|+|+..+......... ..+.-....+||+||
T Consensus 309 ~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DE 383 (732)
T TIGR00603 309 VSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDE 383 (732)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEc
Confidence 9999999999998644445666666653221 123468999999877533221100 001124578999999
Q ss_pred hhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 348 ADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 348 ah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
||++-. .....++..+. ....|++|||+-
T Consensus 384 vH~lpA----~~fr~il~~l~-------------------------a~~RLGLTATP~ 412 (732)
T TIGR00603 384 VHVVPA----AMFRRVLTIVQ-------------------------AHCKLGLTATLV 412 (732)
T ss_pred cccccH----HHHHHHHHhcC-------------------------cCcEEEEeecCc
Confidence 998853 23344555553 234689999985
No 97
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.45 E-value=2.5e-13 Score=144.41 Aligned_cols=171 Identities=19% Similarity=0.244 Sum_probs=123.7
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|..+|.+.+... ..+..+++.|||.+|||++-.. +++.+++..+ .--||+++||.+|
T Consensus 511 ~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY-~iEKVLResD--------------------~~VVIyvaPtKaL 568 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFY-AIEKVLRESD--------------------SDVVIYVAPTKAL 568 (1330)
T ss_pred CCcHHHHHHhhhh-hcccceEEEeeccCCceeccHH-HHHHHHhhcC--------------------CCEEEEecchHHH
Confidence 6889999999776 6788999999999999987433 4455544321 2269999999999
Q ss_pred HHHHHHHHHHHHccCC-ceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhh
Q 012337 275 ALQVTDHLKEVAKGIN-VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~-~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~ 353 (465)
+.|+...+........ .+...+.|....+-+.. .-+|+|+|+-|+-|..+|............|+++|+||+|.+..
T Consensus 569 VnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~ 646 (1330)
T KOG0949|consen 569 VNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN 646 (1330)
T ss_pred hhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccc
Confidence 9999888876653222 23333344433322211 12589999999999988865322345678999999999999875
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhh
Q 012337 354 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 415 (465)
Q Consensus 354 ~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 415 (465)
+.-.--++.++.++ ++.+|++|||+.|+..|.+|++
T Consensus 647 ~ed~l~~Eqll~li--------------------------~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 647 EEDGLLWEQLLLLI--------------------------PCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred cccchHHHHHHHhc--------------------------CCCeeEEecccCCHHHHHHHHH
Confidence 54444445555444 4789999999999999999998
No 98
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.43 E-value=8.1e-13 Score=149.36 Aligned_cols=168 Identities=21% Similarity=0.214 Sum_probs=105.9
Q ss_pred CCCCCCcHHHH--HHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012337 191 LGFKEPTPIQK--ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 268 (465)
Q Consensus 191 ~g~~~p~~iQ~--~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 268 (465)
..|....|+.. ..|...+.+++.+|++|+||||||.. +|.+-.- . + .....++++.
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle--~----------------~--~~~~~~I~~t 117 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLE--L----------------G--RGSHGLIGHT 117 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHH--c----------------C--CCCCceEecC
Confidence 34554455554 33445556778899999999999985 3433211 0 0 0112245566
Q ss_pred cccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecch
Q 012337 269 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 269 ~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEa 348 (465)
-|.|-.|..++..+.... +..++..+|..-. +......++.|+|+|||+|+..+..+ ..|+.+.+||||||
T Consensus 118 QPRRlAA~svA~RvA~el---g~~lG~~VGY~vR--~~~~~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEa 188 (1283)
T TIGR01967 118 QPRRLAARTVAQRIAEEL---GTPLGEKVGYKVR--FHDQVSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEA 188 (1283)
T ss_pred CccHHHHHHHHHHHHHHh---CCCcceEEeeEEc--CCcccCCCceeeeccccHHHHHhhhC----cccccCcEEEEcCc
Confidence 677766666666665543 3333333332100 11112456789999999999988653 45899999999999
Q ss_pred h-HhhhcCCHHH-HHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhh
Q 012337 349 D-RMIENGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 415 (465)
Q Consensus 349 h-~ll~~~~~~~-l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 415 (465)
| ++++.++.-. +..++... +..|+|+||||+. ...|.+++.
T Consensus 189 HERsL~~D~LL~lLk~il~~r-------------------------pdLKlIlmSATld-~~~fa~~F~ 231 (1283)
T TIGR01967 189 HERSLNIDFLLGYLKQLLPRR-------------------------PDLKIIITSATID-PERFSRHFN 231 (1283)
T ss_pred chhhccchhHHHHHHHHHhhC-------------------------CCCeEEEEeCCcC-HHHHHHHhc
Confidence 9 5887777543 44444322 4579999999996 456777764
No 99
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.42 E-value=3.6e-12 Score=142.72 Aligned_cols=97 Identities=26% Similarity=0.319 Sum_probs=75.0
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHH---HHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 012337 181 HPLLMKSIYRLGFKEPTPIQKACIPA---AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 257 (465)
Q Consensus 181 ~~~l~~~l~~~g~~~p~~iQ~~~i~~---~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 257 (465)
++.+...+...||. ++|.|.+.+.. .+.+++++++.||||+|||++|++|++....
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-------------------- 290 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-------------------- 290 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------------------
Confidence 44667777788984 89999976553 3457899999999999999999999987652
Q ss_pred CCCCCeEEEEEcccHHHHHHHHH-HHHHHHccCC--ceEEEEecCCC
Q 012337 258 APKGHLRALIITPTRELALQVTD-HLKEVAKGIN--VRVVPIVGGMS 301 (465)
Q Consensus 258 ~~~~~~~vLil~Ptr~La~Qv~~-~l~~l~~~~~--~~v~~~~gg~~ 301 (465)
.+.++||.+||++|..|+.. .+..+.+.++ ++++.+.|+.+
T Consensus 291 ---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ 334 (850)
T TIGR01407 291 ---TEKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSN 334 (850)
T ss_pred ---CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchh
Confidence 12379999999999999865 5666655444 77777777754
No 100
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.6e-13 Score=139.91 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=104.2
Q ss_pred HHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH-----HHHHH
Q 012337 204 IPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE-----LALQV 278 (465)
Q Consensus 204 i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~-----La~Qv 278 (465)
|..+++.+.-||+||.||||||...-..+.+.-+.. .....|.+|-|+..|. +|.+|
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s------------------~~~~~~gmIGITqPRRVAaiamAkRV 325 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFAS------------------EQSSSPGMIGITQPRRVAAIAMAKRV 325 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCC------------------ccCCCCCeeeecCchHHHHHHHHHHH
Confidence 334445566789999999999998666666554422 1223356777765553 45556
Q ss_pred HHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH------hh
Q 012337 279 TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR------MI 352 (465)
Q Consensus 279 ~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~------ll 352 (465)
..++..+....++++ ++.........|.++|.|.|+.-|.++ +-|..++.|||||||. ||
T Consensus 326 a~EL~~~~~eVsYqI----------Rfd~ti~e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSvnTDIL 391 (1172)
T KOG0926|consen 326 AFELGVLGSEVSYQI----------RFDGTIGEDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSVNTDIL 391 (1172)
T ss_pred HHHhccCccceeEEE----------EeccccCCCceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccchHHHH
Confidence 666655544444444 122334456789999999999999875 7799999999999996 44
Q ss_pred hcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHH
Q 012337 353 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 411 (465)
Q Consensus 353 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 411 (465)
.|+...+..|...+...+. .-++..+|+|||||- ..+|-
T Consensus 392 -iGmLSRiV~LR~k~~ke~~------------------~~kpLKLIIMSATLR-VsDFt 430 (1172)
T KOG0926|consen 392 -IGMLSRIVPLRQKYYKEQC------------------QIKPLKLIIMSATLR-VSDFT 430 (1172)
T ss_pred -HHHHHHHHHHHHHHhhhhc------------------ccCceeEEEEeeeEE-ecccc
Confidence 4566666666666553221 126899999999996 23444
No 101
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.41 E-value=1e-12 Score=136.45 Aligned_cols=121 Identities=22% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCcHHHHHHHHHHHhc---CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~---~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.|+++|.+++..+..+ .+..++++|||+|||++++..+.... ..+||||||
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~--------------------------~~~Lvlv~~ 89 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK--------------------------RSTLVLVPT 89 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc--------------------------CCEEEEECc
Confidence 6999999999998754 88999999999999988765543321 239999999
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHH--HhCCCccccccCceeEEEecchh
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL--MSGGEKHLVELHTLSFFVLDEAD 349 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~--l~~~~~~~~~l~~i~~lViDEah 349 (465)
++|+.|+.+.+....... ..++ .+||..... .. ..|.|+|...+... +. .+......+|||||||
T Consensus 90 ~~L~~Qw~~~~~~~~~~~-~~~g-~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~-----~~~~~~~~liI~DE~H 156 (442)
T COG1061 90 KELLDQWAEALKKFLLLN-DEIG-IYGGGEKEL-----EP-AKVTVATVQTLARRQLLD-----EFLGNEFGLIIFDEVH 156 (442)
T ss_pred HHHHHHHHHHHHHhcCCc-cccc-eecCceecc-----CC-CcEEEEEhHHHhhhhhhh-----hhcccccCEEEEEccc
Confidence 999999997776654211 1233 333322211 11 36999999888663 21 1333478999999999
Q ss_pred Hhhhc
Q 012337 350 RMIEN 354 (465)
Q Consensus 350 ~ll~~ 354 (465)
++...
T Consensus 157 h~~a~ 161 (442)
T COG1061 157 HLPAP 161 (442)
T ss_pred cCCcH
Confidence 98744
No 102
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.39 E-value=4.3e-12 Score=140.66 Aligned_cols=137 Identities=20% Similarity=0.321 Sum_probs=101.7
Q ss_pred HHHCCCCCCcHHHHH---HHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 012337 188 IYRLGFKEPTPIQKA---CIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 264 (465)
Q Consensus 188 l~~~g~~~p~~iQ~~---~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (465)
+.-.|| .+++-|.+ ++...+.++..+++.|+||+|||++|++|++... .+++
T Consensus 239 ~~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------------------~~~~ 293 (820)
T PRK07246 239 IALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------------------DQRQ 293 (820)
T ss_pred hccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------------------CCCc
Confidence 334566 68999987 4444566788999999999999999999988643 1357
Q ss_pred EEEEcccHHHHHHH-HHHHHHHHccCCceEEEEecCCCHH---HHHHHH-------------------------------
Q 012337 265 ALIITPTRELALQV-TDHLKEVAKGINVRVVPIVGGMSTE---KQERLL------------------------------- 309 (465)
Q Consensus 265 vLil~Ptr~La~Qv-~~~l~~l~~~~~~~v~~~~gg~~~~---~~~~~~------------------------------- 309 (465)
|||++|||+|+.|+ ...+..+.+..++.+..+.|+.++- +....+
T Consensus 294 vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El 373 (820)
T PRK07246 294 IIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEI 373 (820)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhc
Confidence 99999999999999 4778878777888888888876531 110000
Q ss_pred -------------------------------------hCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhh
Q 012337 310 -------------------------------------KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 310 -------------------------------------~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll 352 (465)
...+||||+.-.-|...+..+ ..+....+|||||||+|.
T Consensus 374 ~~~~~~~~~w~~i~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~----~~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 374 KQKQRYAAYFDQLKHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDD----KDFARNKVLVFDEAQKLM 449 (820)
T ss_pred cCCccccHHHHHhhccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhc----cCCCCCCEEEEECcchhH
Confidence 012799999998877766432 125678999999999976
Q ss_pred h
Q 012337 353 E 353 (465)
Q Consensus 353 ~ 353 (465)
+
T Consensus 450 ~ 450 (820)
T PRK07246 450 L 450 (820)
T ss_pred H
Confidence 4
No 103
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.38 E-value=3.2e-12 Score=144.75 Aligned_cols=134 Identities=22% Similarity=0.224 Sum_probs=88.2
Q ss_pred CCcHHHHHHHHHHHh----cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 195 EPTPIQKACIPAAAH----QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~----~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.++++|..+|..+.. +.+.+|++++||||||++++. ++..+++. ....++|||+|
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~--------------------~~~~rVLfLvD 471 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA--------------------KRFRRILFLVD 471 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc--------------------CccCeEEEEec
Confidence 589999999977642 346799999999999988443 44444332 12348999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc--cccccCceeEEEecch
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK--HLVELHTLSFFVLDEA 348 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~--~~~~l~~i~~lViDEa 348 (465)
+++|+.|+.+.|..+.......+..+++..... .........|+|||...|...+..... ....+..+.+||||||
T Consensus 472 R~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEa 549 (1123)
T PRK11448 472 RSALGEQAEDAFKDTKIEGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEA 549 (1123)
T ss_pred HHHHHHHHHHHHHhcccccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECC
Confidence 999999999999876322111111122211111 111223578999999998776532211 1234678889999999
Q ss_pred hHh
Q 012337 349 DRM 351 (465)
Q Consensus 349 h~l 351 (465)
|+-
T Consensus 550 HRs 552 (1123)
T PRK11448 550 HRG 552 (1123)
T ss_pred CCC
Confidence 984
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.37 E-value=1e-12 Score=140.44 Aligned_cols=187 Identities=20% Similarity=0.226 Sum_probs=148.1
Q ss_pred HHHHHHHCCCCCCcHHHHHHH--HHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 012337 184 LMKSIYRLGFKEPTPIQKACI--PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 261 (465)
Q Consensus 184 l~~~l~~~g~~~p~~iQ~~~i--~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (465)
..-.+...|...++.+|.+++ |.++ .++|+|+.+||+.|||++.-+.++..++..+.
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~rr-------------------- 270 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRRR-------------------- 270 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHhh--------------------
Confidence 334445688889999999997 5565 79999999999999999998888888775542
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCcee
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 341 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~ 341 (465)
.++.++|...-+..-...+..++...|+.+-..+|....... ...-++.|||-++-..+++.. ...-.+..+.
T Consensus 271 --~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~l-ie~g~~~~~g 343 (1008)
T KOG0950|consen 271 --NVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSL-IEQGRLDFLG 343 (1008)
T ss_pred --ceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHH-HhcCCccccC
Confidence 589999999999999999999988889999888877665332 234579999999876666432 1123478899
Q ss_pred EEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhc
Q 012337 342 FFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 417 (465)
Q Consensus 342 ~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 417 (465)
+|||||.|.+.+.+.+..++.++..+-..+.. ...|+|+||||++|......||...
T Consensus 344 ~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~-------------------~~~~iIGMSATi~N~~lL~~~L~A~ 400 (1008)
T KOG0950|consen 344 MVVVDELHMIGDKGRGAILELLLAKILYENLE-------------------TSVQIIGMSATIPNNSLLQDWLDAF 400 (1008)
T ss_pred cEEEeeeeeeeccccchHHHHHHHHHHHhccc-------------------cceeEeeeecccCChHHHHHHhhhh
Confidence 99999999999999999999988766433221 2379999999999999999998753
No 105
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.37 E-value=1e-11 Score=129.97 Aligned_cols=142 Identities=25% Similarity=0.358 Sum_probs=112.4
Q ss_pred CCCHHHHH-HHHHCCCCCCcHHHHHHHHHHHhc-----CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 179 RLHPLLMK-SIYRLGFKEPTPIQKACIPAAAHQ-----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 179 ~l~~~l~~-~l~~~g~~~p~~iQ~~~i~~~l~~-----~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
.....+++ .+..+.| .||..|+.++..|... ..+=|++|.-|||||+++++.++..+-
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------------- 309 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------------- 309 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---------------
Confidence 34444444 4466888 8999999999888531 114589999999999999999998873
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHh
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMS 328 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~ 328 (465)
.|.++..++||--||.|-+..+.+++..++++|..++|..........+ .+..+|+|||-.-+.+
T Consensus 310 --------~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd--- 378 (677)
T COG1200 310 --------AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD--- 378 (677)
T ss_pred --------cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc---
Confidence 3558999999999999999999999999999999999998765543333 3458999999644322
Q ss_pred CCCccccccCceeEEEecchhHhh
Q 012337 329 GGEKHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lViDEah~ll 352 (465)
...++++.++|+||=|+..
T Consensus 379 -----~V~F~~LgLVIiDEQHRFG 397 (677)
T COG1200 379 -----KVEFHNLGLVIIDEQHRFG 397 (677)
T ss_pred -----ceeecceeEEEEecccccc
Confidence 2668999999999999854
No 106
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=119.31 Aligned_cols=173 Identities=21% Similarity=0.290 Sum_probs=122.4
Q ss_pred CCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 012337 178 LRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 256 (465)
Q Consensus 178 l~l~~~l~~~l~~-~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 256 (465)
++-+....+-|.. +....++|+|..+|...+ .+.++++..|||.||++||.||+|-.
T Consensus 76 fpws~e~~~ilk~~f~lekfrplq~~ain~~m-a~ed~~lil~tgggkslcyqlpal~a--------------------- 133 (695)
T KOG0353|consen 76 FPWSDEAKDILKEQFHLEKFRPLQLAAINATM-AGEDAFLILPTGGGKSLCYQLPALCA--------------------- 133 (695)
T ss_pred CCCchHHHHHHHHHhhHHhcChhHHHHhhhhh-ccCceEEEEeCCCccchhhhhhHHhc---------------------
Confidence 3444444444443 445678999999999987 79999999999999999999998742
Q ss_pred cCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH---Hh---CCCcEEEeChHHHHH---HH
Q 012337 257 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK---ARPELVVGTPGRLWE---LM 327 (465)
Q Consensus 257 ~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---~~---~~~dIiV~TP~~L~~---~l 327 (465)
...+|||+|...|+..+.-.++.+ |+....+....+...-.+. +- ....+|..||+.|.. +|
T Consensus 134 -----dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~m 204 (695)
T KOG0353|consen 134 -----DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFM 204 (695)
T ss_pred -----CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHH
Confidence 125999999999999888777776 6666666666665443222 11 245799999999842 33
Q ss_pred hCCCccccccCceeEEEecchhHhhhcCC-----HHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEee
Q 012337 328 SGGEKHLVELHTLSFFVLDEADRMIENGH-----FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 402 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lViDEah~ll~~~~-----~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 402 (465)
..- .+......+.++.|||+|+...||+ +..+.-+-..+ +...+|+++|
T Consensus 205 nkl-eka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf-------------------------~~~~iiglta 258 (695)
T KOG0353|consen 205 NKL-EKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQF-------------------------KGAPIIGLTA 258 (695)
T ss_pred HHH-HHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhC-------------------------CCCceeeeeh
Confidence 221 1123456788999999999999986 33333332332 5678999999
Q ss_pred eccCc
Q 012337 403 TIALS 407 (465)
Q Consensus 403 Tl~~~ 407 (465)
|.++.
T Consensus 259 tatn~ 263 (695)
T KOG0353|consen 259 TATNH 263 (695)
T ss_pred hhhcc
Confidence 99853
No 107
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.33 E-value=1.8e-11 Score=130.44 Aligned_cols=73 Identities=27% Similarity=0.247 Sum_probs=57.9
Q ss_pred HHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 012337 207 AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 286 (465)
Q Consensus 207 ~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~ 286 (465)
.+.+++.+++.|+||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+.
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------------------~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------------------PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------------------cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999877421 23589999999999999999998887
Q ss_pred -cc--CCceEEEEecCC
Q 012337 287 -KG--INVRVVPIVGGM 300 (465)
Q Consensus 287 -~~--~~~~v~~~~gg~ 300 (465)
+. ..++++.+.|+.
T Consensus 71 ~~~l~~~i~~~~lkGr~ 87 (636)
T TIGR03117 71 AEGLAGPVQAGFFPGSQ 87 (636)
T ss_pred HhhcCCCeeEEEEECCc
Confidence 33 345566555543
No 108
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.26 E-value=4.8e-11 Score=130.00 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=97.0
Q ss_pred CcHHHHHHHHHHHh---c------CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 012337 196 PTPIQKACIPAAAH---Q------GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 266 (465)
Q Consensus 196 p~~iQ~~~i~~~l~---~------~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 266 (465)
+..+|..++..++. + .+..+++.+||||||++.+..+...+ .. ...+++|
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~--------------------~~~~~vl 297 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL--------------------LKNPKVF 297 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh--------------------cCCCeEE
Confidence 67889888876542 2 35789999999999988655543332 11 2357899
Q ss_pred EEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh-CCCcEEEeChHHHHHHHhCCCccc-cccCceeEEE
Q 012337 267 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHL-VELHTLSFFV 344 (465)
Q Consensus 267 il~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~-~~~dIiV~TP~~L~~~l~~~~~~~-~~l~~i~~lV 344 (465)
||+|+++|..|+.+.|..+... ...+..+.......+. ....|+|+|...|...+....... ....++ +||
T Consensus 298 ~lvdR~~L~~Q~~~~f~~~~~~------~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~-lvI 370 (667)
T TIGR00348 298 FVVDRRELDYQLMKEFQSLQKD------CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV-VVI 370 (667)
T ss_pred EEECcHHHHHHHHHHHHhhCCC------CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE-EEE
Confidence 9999999999999999887431 0111122333333333 246899999999976443211000 011122 799
Q ss_pred ecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 345 LDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 345 iDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
+||||+.....+. ..+...++ ....|+||||.-
T Consensus 371 vDEaHrs~~~~~~---~~l~~~~p-------------------------~a~~lGfTaTP~ 403 (667)
T TIGR00348 371 FDEAHRSQYGELA---KNLKKALK-------------------------NASFFGFTGTPI 403 (667)
T ss_pred EEcCccccchHHH---HHHHhhCC-------------------------CCcEEEEeCCCc
Confidence 9999986522222 22234554 457899999984
No 109
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.23 E-value=7.2e-11 Score=128.84 Aligned_cols=158 Identities=21% Similarity=0.206 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHH
Q 012337 201 KACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 280 (465)
Q Consensus 201 ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~ 280 (465)
.+.+ .++.+.+-+|++|+||||||...-..+++..+ ....++.++-|-|-.|.-++.
T Consensus 56 ~~i~-~ai~~~~vvii~getGsGKTTqlP~~lle~g~----------------------~~~g~I~~tQPRRlAArsvA~ 112 (845)
T COG1643 56 DEIL-KAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----------------------GIAGKIGCTQPRRLAARSVAE 112 (845)
T ss_pred HHHH-HHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----------------------ccCCeEEecCchHHHHHHHHH
Confidence 3444 44467888999999999999987777776653 112244555555544555666
Q ss_pred HHHHHHc-cCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH-hhhcCC-H
Q 012337 281 HLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIENGH-F 357 (465)
Q Consensus 281 ~l~~l~~-~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~-ll~~~~-~ 357 (465)
.+.+... ..|-.|++-+-. ......+..|-|+|.|.|++.+.++ ..|+.+++|||||||. -++..+ .
T Consensus 113 RvAeel~~~~G~~VGY~iRf------e~~~s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilL 182 (845)
T COG1643 113 RVAEELGEKLGETVGYSIRF------ESKVSPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILL 182 (845)
T ss_pred HHHHHhCCCcCceeeEEEEe------eccCCCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHH
Confidence 5554432 223333332222 2233456789999999999999765 5699999999999994 332222 2
Q ss_pred HHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhh
Q 012337 358 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 416 (465)
Q Consensus 358 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 416 (465)
..+..++..++ ....+|+||||+- +..|...|..
T Consensus 183 gllk~~~~~rr------------------------~DLKiIimSATld-~~rfs~~f~~ 216 (845)
T COG1643 183 GLLKDLLARRR------------------------DDLKLIIMSATLD-AERFSAYFGN 216 (845)
T ss_pred HHHHHHHhhcC------------------------CCceEEEEecccC-HHHHHHHcCC
Confidence 22333444443 4689999999995 6668777764
No 110
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.17 E-value=1e-09 Score=121.06 Aligned_cols=165 Identities=25% Similarity=0.326 Sum_probs=128.7
Q ss_pred CHHHHHHHH-HCCCCCCcHHHHHHHHHHHh---cC--CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 012337 181 HPLLMKSIY-RLGFKEPTPIQKACIPAAAH---QG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 254 (465)
Q Consensus 181 ~~~l~~~l~-~~g~~~p~~iQ~~~i~~~l~---~~--~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 254 (465)
+......+. .++| .-|+=|..+|..+.. ++ -|=|+||--|-|||-+++=+++-.+.
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~----------------- 641 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM----------------- 641 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-----------------
Confidence 333444443 3667 569999999988753 23 37899999999999998888877663
Q ss_pred hhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCC
Q 012337 255 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 255 ~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~ 330 (465)
.+.+|.|||||--||.|-++.|++-+.+.+++|..+.--.+..++...+. +..|||||| ..+|..+
T Consensus 642 ------~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT----HrLL~kd 711 (1139)
T COG1197 642 ------DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT----HRLLSKD 711 (1139)
T ss_pred ------CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec----hHhhCCC
Confidence 35789999999999999999999999999999998887777766655543 468999999 4556543
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
..+.++.+|||||-|+.. -..-+.+..+. ..+-++-+|||.-+
T Consensus 712 ----v~FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr----------------------------~~VDvLTLSATPIP 754 (1139)
T COG1197 712 ----VKFKDLGLLIIDEEQRFG-VKHKEKLKELR----------------------------ANVDVLTLSATPIP 754 (1139)
T ss_pred ----cEEecCCeEEEechhhcC-ccHHHHHHHHh----------------------------ccCcEEEeeCCCCc
Confidence 678999999999999875 66666666665 44568889999754
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.16 E-value=3.3e-10 Score=121.97 Aligned_cols=185 Identities=23% Similarity=0.316 Sum_probs=131.1
Q ss_pred CCcHHHHHHHHHHHhc---CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~---~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.+.+-|..++..+... ....++.+.||||||-+|+-.+-..+.. |-.||||+|-
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-----------------------GkqvLvLVPE 254 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-----------------------GKQVLVLVPE 254 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-----------------------CCEEEEEecc
Confidence 6788999999888644 3678999999999999998776666532 3479999999
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCccccccCceeEEEecc
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 347 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDE 347 (465)
.+|..|+.+.|+..+ +.++..++++.+..+....+. +...|+|||-..|. ..+.++.+|||||
T Consensus 255 I~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF----------~Pf~~LGLIIvDE 321 (730)
T COG1198 255 IALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF----------LPFKNLGLIIVDE 321 (730)
T ss_pred ccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc----------CchhhccEEEEec
Confidence 999999999999876 588999999998766544443 56899999965542 5688999999999
Q ss_pred hhHhhhc---C---CHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhccccc
Q 012337 348 ADRMIEN---G---HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKL 421 (465)
Q Consensus 348 ah~ll~~---~---~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~ 421 (465)
=|.-.-. + +...|-..+.+. ...++|+-|||.+ .+...+...+.+.
T Consensus 322 EHD~sYKq~~~prYhARdvA~~Ra~~-------------------------~~~pvvLgSATPS--LES~~~~~~g~y~- 373 (730)
T COG1198 322 EHDSSYKQEDGPRYHARDVAVLRAKK-------------------------ENAPVVLGSATPS--LESYANAESGKYK- 373 (730)
T ss_pred cccccccCCcCCCcCHHHHHHHHHHH-------------------------hCCCEEEecCCCC--HHHHHhhhcCceE-
Confidence 9942211 1 123333333333 5789999999986 3334444444333
Q ss_pred ccccCccccHHHHHHHhC--ccccceEEecCch
Q 012337 422 KQSVNGLNSIETLSERAG--MRANVAIVDLTNV 452 (465)
Q Consensus 422 ~~~~~~~~~~~~l~~~~~--~~~~~~iidl~~~ 452 (465)
.-.|..|++ --++..+||+...
T Consensus 374 ---------~~~L~~R~~~a~~p~v~iiDmr~e 397 (730)
T COG1198 374 ---------LLRLTNRAGRARLPRVEIIDMRKE 397 (730)
T ss_pred ---------EEEccccccccCCCcceEEecccc
Confidence 223445555 1146788888773
No 112
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=4.8e-10 Score=121.86 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=103.1
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
+|. .|+++|.-.--. |++|+ |+...||+|||+++.+|++-..+ .+..|.|++|
T Consensus 79 lGm-~~ydVQliGg~~-Lh~G~--iaEM~TGEGKTLvA~l~a~l~al-----------------------~G~~VhvvT~ 131 (913)
T PRK13103 79 MGM-RHFDVQLIGGMT-LHEGK--IAEMRTGEGKTLVGTLAVYLNAL-----------------------SGKGVHVVTV 131 (913)
T ss_pred hCC-CcchhHHHhhhH-hccCc--cccccCCCCChHHHHHHHHHHHH-----------------------cCCCEEEEeC
Confidence 565 788999777644 45554 78999999999999999886654 3457999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCC---ccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~i~~lViD 346 (465)
|--||.|=+..+..++..+|+.|.++.++.+......... +||++||..-| .+.|...- ......+.+.++|||
T Consensus 132 ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVD 209 (913)
T PRK13103 132 NDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVID 209 (913)
T ss_pred CHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEec
Confidence 9999999999999999999999999999888766555444 89999999886 23332210 011235788999999
Q ss_pred chhHhh
Q 012337 347 EADRMI 352 (465)
Q Consensus 347 Eah~ll 352 (465)
|+|.+|
T Consensus 210 EvDsiL 215 (913)
T PRK13103 210 EVDSIL 215 (913)
T ss_pred hhhhee
Confidence 999866
No 113
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.11 E-value=5.1e-09 Score=117.20 Aligned_cols=144 Identities=18% Similarity=0.190 Sum_probs=95.0
Q ss_pred CCcHHHHHHHHHHHh---cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAAH---QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~---~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.+.++|..++..++. +|.+.|++-..|.|||+..+.. +.++...+ + ....+|||||.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~------------------~-~~gp~LIVvP~ 228 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR------------------G-ITGPHMVVAPK 228 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc------------------C-CCCCEEEEeCh
Confidence 689999999987753 6778999999999999875433 33333211 1 12248999996
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHH---HHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecch
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~---~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEa 348 (465)
.+..++.++|.+++. .+.++.++|......... ......+|+|+|++.+...... +.--...+||||||
T Consensus 229 -SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEA 300 (1033)
T PLN03142 229 -STLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEA 300 (1033)
T ss_pred -HHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCc
Confidence 567889999998864 456667776543322111 1124679999999988654321 11234678999999
Q ss_pred hHhhhcCCHHHHHHHHHhCC
Q 012337 349 DRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 349 h~ll~~~~~~~l~~i~~~l~ 368 (465)
|+|-. ....+..++..+.
T Consensus 301 HrIKN--~~Sklskalr~L~ 318 (1033)
T PLN03142 301 HRIKN--ENSLLSKTMRLFS 318 (1033)
T ss_pred cccCC--HHHHHHHHHHHhh
Confidence 99853 2344455555553
No 114
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.10 E-value=2.5e-09 Score=116.71 Aligned_cols=186 Identities=16% Similarity=0.141 Sum_probs=121.1
Q ss_pred cHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHH
Q 012337 197 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~ 276 (465)
+..+...+..+ .+.+.++++|.||+|||......+|++.... + ...++++.-|.|-.|.
T Consensus 175 ~~~r~~Il~~i-~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~-------------------~-~~~~IicTQPRRIsAI 233 (924)
T KOG0920|consen 175 YKMRDTILDAI-EENQVVVISGETGCGKTTQVPQFILDEAIES-------------------G-AACNIICTQPRRISAI 233 (924)
T ss_pred HHHHHHHHHHH-HhCceEEEeCCCCCCchhhhhHHHHHHHHhc-------------------C-CCCeEEecCCchHHHH
Confidence 44556666555 6789999999999999999888888776543 1 4567888889888777
Q ss_pred HHHHHHHHH-HccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH-hhhc
Q 012337 277 QVTDHLKEV-AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MIEN 354 (465)
Q Consensus 277 Qv~~~l~~l-~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~-ll~~ 354 (465)
-+++++..- +...|-.|++-++..+. ......+++||.|.|++.|..+ ..+..+.+||+||+|. =++.
T Consensus 234 svAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~ 303 (924)
T KOG0920|consen 234 SVAERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINT 303 (924)
T ss_pred HHHHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCc
Confidence 777766542 22233334333333222 2223689999999999999763 6789999999999994 2223
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhcccccccccCccccHHHH
Q 012337 355 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVNGLNSIETL 434 (465)
Q Consensus 355 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 434 (465)
.|.--+...+-..+ +..++|+||||+- +..|..++.....-..+....+...-.|
T Consensus 304 DflLi~lk~lL~~~------------------------p~LkvILMSAT~d-ae~fs~YF~~~pvi~i~grtfpV~~~fL 358 (924)
T KOG0920|consen 304 DFLLILLKDLLPRN------------------------PDLKVILMSATLD-AELFSDYFGGCPVITIPGRTFPVKEYFL 358 (924)
T ss_pred ccHHHHHHHHhhhC------------------------CCceEEEeeeecc-hHHHHHHhCCCceEeecCCCcchHHHHH
Confidence 34322222221222 5789999999996 7778888875544444444443333334
Q ss_pred HHHh
Q 012337 435 SERA 438 (465)
Q Consensus 435 ~~~~ 438 (465)
.+.+
T Consensus 359 EDil 362 (924)
T KOG0920|consen 359 EDIL 362 (924)
T ss_pred HHHH
Confidence 3333
No 115
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.10 E-value=4e-10 Score=97.05 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=81.9
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 289 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~ 289 (465)
.|.-.++-..+|+|||.-.+.-++...+.. +.++|||.|||.++..+.+.|+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~----------------------~~rvLvL~PTRvva~em~~aL~~~---- 56 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR----------------------RLRVLVLAPTRVVAEEMYEALKGL---- 56 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT----------------------T--EEEEESSHHHHHHHHHHTTTS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc----------------------cCeEEEecccHHHHHHHHHHHhcC----
Confidence 355567889999999988766666544432 448999999999999998887543
Q ss_pred CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCC
Q 012337 290 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 369 (465)
Q Consensus 290 ~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~ 369 (465)
++++....-+. ....+.-|-|+|.+-+.+.+.++ ..+.+++++|+||||.. |.....-...+.. +..
T Consensus 57 ~~~~~t~~~~~-------~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~-~~~ 123 (148)
T PF07652_consen 57 PVRFHTNARMR-------THFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFT-DPTSIAARGYLRE-LAE 123 (148)
T ss_dssp SEEEESTTSS-----------SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT---SHHHHHHHHHHHH-HHH
T ss_pred CcccCceeeec-------cccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccC-CHHHHhhheeHHH-hhh
Confidence 44443211110 12345678899999988877653 44689999999999974 2322222222221 110
Q ss_pred CCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 370 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
. ....+|++|||.|...
T Consensus 124 ~----------------------g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 124 S----------------------GEAKVIFMTATPPGSE 140 (148)
T ss_dssp T----------------------TS-EEEEEESS-TT--
T ss_pred c----------------------cCeeEEEEeCCCCCCC
Confidence 0 3367999999998654
No 116
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.10 E-value=1.1e-09 Score=107.53 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=56.3
Q ss_pred CCCCCCcHHHHHHHHH---HHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012337 191 LGFKEPTPIQKACIPA---AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 267 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~---~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 267 (465)
+.| .|+|.|.+.+.. .+.+|.++++.||||+|||++|++|++..+..... .....+++|
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~-----------------~~~~~kvi~ 66 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE-----------------RIQKIKLIY 66 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc-----------------cccccceeE
Confidence 345 469999885443 34578999999999999999999999987653211 002347888
Q ss_pred EcccHHHHHHHHHHHHHH
Q 012337 268 ITPTRELALQVTDHLKEV 285 (465)
Q Consensus 268 l~Ptr~La~Qv~~~l~~l 285 (465)
+++|..+..|....++++
T Consensus 67 ~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 67 LSRTVSEIEKRLEELRKL 84 (289)
T ss_pred EeccHHHHHHHHHHHHhc
Confidence 888888888877666654
No 117
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.10 E-value=1.1e-09 Score=107.53 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=56.3
Q ss_pred CCCCCCcHHHHHHHHH---HHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012337 191 LGFKEPTPIQKACIPA---AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 267 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~---~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 267 (465)
+.| .|+|.|.+.+.. .+.+|.++++.||||+|||++|++|++..+..... .....+++|
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~-----------------~~~~~kvi~ 66 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPE-----------------RIQKIKLIY 66 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcc-----------------cccccceeE
Confidence 345 469999885443 34578999999999999999999999987653211 002347888
Q ss_pred EcccHHHHHHHHHHHHHH
Q 012337 268 ITPTRELALQVTDHLKEV 285 (465)
Q Consensus 268 l~Ptr~La~Qv~~~l~~l 285 (465)
+++|..+..|....++++
T Consensus 67 ~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 67 LSRTVSEIEKRLEELRKL 84 (289)
T ss_pred EeccHHHHHHHHHHHHhc
Confidence 888888888877666654
No 118
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.07 E-value=2e-09 Score=121.57 Aligned_cols=87 Identities=23% Similarity=0.245 Sum_probs=63.7
Q ss_pred CCCCCCcHHHHHHHH---HHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012337 191 LGFKEPTPIQKACIP---AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 267 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~---~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 267 (465)
.|| .++|-|.+.+. ..+.++..+++.|+||+|||++|++|++.+... .+-++||
T Consensus 254 ~~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~----------------------~~~~vvI 310 (928)
T PRK08074 254 PKY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK----------------------KEEPVVI 310 (928)
T ss_pred CCC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc----------------------cCCeEEE
Confidence 355 78999988544 345678899999999999999999999865532 2347999
Q ss_pred EcccHHHHHHHHHH----HHHHHccCCceEEEEecCCC
Q 012337 268 ITPTRELALQVTDH----LKEVAKGINVRVVPIVGGMS 301 (465)
Q Consensus 268 l~Ptr~La~Qv~~~----l~~l~~~~~~~v~~~~gg~~ 301 (465)
.++|+.|..|+... +.+++ +..++++.+.|..+
T Consensus 311 sT~T~~LQ~Ql~~kDiP~L~~~~-~~~~~~~~lKGr~n 347 (928)
T PRK08074 311 STYTIQLQQQLLEKDIPLLQKIF-PFPVEAALLKGRSH 347 (928)
T ss_pred EcCCHHHHHHHHHhhHHHHHHHc-CCCceEEEEEcccc
Confidence 99999999998663 33332 23456666666544
No 119
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.07 E-value=5.3e-10 Score=109.98 Aligned_cols=161 Identities=19% Similarity=0.191 Sum_probs=92.5
Q ss_pred HHHHHHHHHHh------------cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 012337 199 IQKACIPAAAH------------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 266 (465)
Q Consensus 199 iQ~~~i~~~l~------------~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 266 (465)
+|..++..++. ..+.+|++..+|+|||+..+..+. .+... ......-.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~-----------------~~~~~~~~~L 62 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNE-----------------FPQRGEKKTL 62 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHC-----------------CTTSS-S-EE
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhc-----------------ccccccccee
Confidence 47777766543 346789999999999988665544 33211 0011111499
Q ss_pred EEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEec
Q 012337 267 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 346 (465)
Q Consensus 267 il~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViD 346 (465)
||+|. .+..|+..++..++....+++..+.|...............+|+|+|...+...........+.--...+||||
T Consensus 63 Iv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvD 141 (299)
T PF00176_consen 63 IVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVD 141 (299)
T ss_dssp EEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEET
T ss_pred Eeecc-chhhhhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEe
Confidence 99999 78899999999998655667777666651222222223467999999999881111001111112348899999
Q ss_pred chhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 347 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 347 Eah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
|+|.+-+ ........+..|. ....+++|||..
T Consensus 142 EaH~~k~--~~s~~~~~l~~l~-------------------------~~~~~lLSgTP~ 173 (299)
T PF00176_consen 142 EAHRLKN--KDSKRYKALRKLR-------------------------ARYRWLLSGTPI 173 (299)
T ss_dssp TGGGGTT--TTSHHHHHHHCCC-------------------------ECEEEEE-SS-S
T ss_pred ccccccc--ccccccccccccc-------------------------cceEEeeccccc
Confidence 9999842 3333444444443 457788999965
No 120
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=1.2e-09 Score=118.44 Aligned_cols=133 Identities=22% Similarity=0.315 Sum_probs=104.1
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+ .|+++|.-+.-. |++|+ |+...||+|||++..+|++-..+ .+..|-|++|
T Consensus 77 ~g~-~~~dvQlig~l~-l~~G~--iaEm~TGEGKTLvA~l~a~l~al-----------------------~G~~v~vvT~ 129 (796)
T PRK12906 77 LGL-RPFDVQIIGGIV-LHEGN--IAEMKTGEGKTLTATLPVYLNAL-----------------------TGKGVHVVTV 129 (796)
T ss_pred hCC-CCchhHHHHHHH-HhcCC--cccccCCCCCcHHHHHHHHHHHH-----------------------cCCCeEEEec
Confidence 566 789999887744 46676 88999999999999999887764 2447999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHH-HHHhCC---CccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW-ELMSGG---EKHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~-~~l~~~---~~~~~~l~~i~~lViD 346 (465)
|--||.|=+..+..+...+|+.|+++.|+.+........ .+||+.||..-|- +.|... .......+.+.+.|||
T Consensus 130 neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvD 207 (796)
T PRK12906 130 NEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVD 207 (796)
T ss_pred cHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeec
Confidence 999999999999999999999999999988776554443 5799999998763 333221 0111234678899999
Q ss_pred chhHhh
Q 012337 347 EADRMI 352 (465)
Q Consensus 347 Eah~ll 352 (465)
|||.||
T Consensus 208 EvDSiL 213 (796)
T PRK12906 208 EVDSIL 213 (796)
T ss_pred cchhee
Confidence 999866
No 121
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.04 E-value=5e-09 Score=101.09 Aligned_cols=153 Identities=24% Similarity=0.298 Sum_probs=107.0
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l---~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.++|.|+.+-..++ .+..++|++|-||+|||-.. ...++..++ .|.++.|.+|.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~----------------------~G~~vciASPR 153 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN----------------------QGGRVCIASPR 153 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh----------------------cCCeEEEecCc
Confidence 78999987765543 46789999999999999763 334444432 35589999999
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHh
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~l 351 (465)
...|..++.+++..+. +..+.+++|+..... ...++|||...|++.- ..++++||||+|..
T Consensus 154 vDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk----------~aFD~liIDEVDAF 214 (441)
T COG4098 154 VDVCLELYPRLKQAFS--NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFK----------QAFDLLIIDEVDAF 214 (441)
T ss_pred ccchHHHHHHHHHhhc--cCCeeeEecCCchhc-------cccEEEEehHHHHHHH----------hhccEEEEeccccc
Confidence 9999999999988764 567888999876532 2679999998887654 35678999999975
Q ss_pred hhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhh
Q 012337 352 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 415 (465)
Q Consensus 352 l~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 415 (465)
- ...-..++...+.-. +..--+|.+|||-+ ..+.+.+.
T Consensus 215 P-~~~d~~L~~Av~~ar-----------------------k~~g~~IylTATp~--k~l~r~~~ 252 (441)
T COG4098 215 P-FSDDQSLQYAVKKAR-----------------------KKEGATIYLTATPT--KKLERKIL 252 (441)
T ss_pred c-ccCCHHHHHHHHHhh-----------------------cccCceEEEecCCh--HHHHHHhh
Confidence 4 222223333332222 24557899999986 33344443
No 122
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.04 E-value=4.9e-09 Score=113.39 Aligned_cols=143 Identities=27% Similarity=0.384 Sum_probs=100.6
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|| .|+..|+.-...++ .|+++-+.||||.|||.--++..+ .+ . ..+.+++||+|
T Consensus 79 ~G~-~~ws~QR~WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl-~~-a---------------------~kgkr~yii~P 133 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLV-RGKSFAIIAPTGVGKTTFGLLMSL-YL-A---------------------KKGKRVYIIVP 133 (1187)
T ss_pred hCC-CchHHHHHHHHHHH-cCCceEEEcCCCCchhHHHHHHHH-HH-H---------------------hcCCeEEEEec
Confidence 455 89999988887887 699999999999999954332222 11 1 12358999999
Q ss_pred cHHHHHHHHHHHHHHHccCC-ceEEE-EecCCCHHHHH----HHHhCCCcEEEeChHHHHHHHhCCCccccccC--ceeE
Q 012337 271 TRELALQVTDHLKEVAKGIN-VRVVP-IVGGMSTEKQE----RLLKARPELVVGTPGRLWELMSGGEKHLVELH--TLSF 342 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~-~~v~~-~~gg~~~~~~~----~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~--~i~~ 342 (465)
|+.|+.|+++.+.+++...+ +.+.. .|+..+..... +.-.++.||+|+|..-|...+. .|+ .+++
T Consensus 134 T~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e-------~L~~~kFdf 206 (1187)
T COG1110 134 TTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE-------ELSKLKFDF 206 (1187)
T ss_pred CHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH-------HhcccCCCE
Confidence 99999999999999987655 44433 56665544322 2223579999999888766553 233 5789
Q ss_pred EEecchhHhhhcCCHHHHHHHHHhC
Q 012337 343 FVLDEADRMIENGHFRELQSIIDML 367 (465)
Q Consensus 343 lViDEah~ll~~~~~~~l~~i~~~l 367 (465)
+++|.+|.++..+ ..+..++..+
T Consensus 207 ifVDDVDA~Lkas--kNvDriL~Ll 229 (1187)
T COG1110 207 IFVDDVDAILKAS--KNVDRLLRLL 229 (1187)
T ss_pred EEEccHHHHHhcc--ccHHHHHHHc
Confidence 9999999988654 3344444333
No 123
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.02 E-value=1.1e-09 Score=120.76 Aligned_cols=170 Identities=21% Similarity=0.163 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHHHHh--cCC-cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAAH--QGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~--~~~-dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
...+.|..++..++. ... .+++.||||+|||.+.+++++..+... .....+++++.|+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-------------------~~~~~r~i~vlP~ 255 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-------------------IKLKSRVIYVLPF 255 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-------------------ccccceEEEEccH
Confidence 348889888877653 234 789999999999999999988776431 1246699999999
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH--------------HhCCCcEEEeChHHHHHHHhCCCcccc-c
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL--------------LKARPELVVGTPGRLWELMSGGEKHLV-E 336 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~--------------~~~~~dIiV~TP~~L~~~l~~~~~~~~-~ 336 (465)
|.++.++++.+.......++.....+|.....-.... ...-..++++||-.+............ .
T Consensus 256 ~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (733)
T COG1203 256 RTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLA 335 (733)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHH
Confidence 9999999999998765443333222333322111000 011245677777666553322221111 1
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
+=..+.+|+||+|.+.+...+..+..++..+.. ....+|+||||+|.
T Consensus 336 ~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~-----------------------~g~~ill~SATlP~ 382 (733)
T COG1203 336 LLLTSLVILDEVHLYADETMLAALLALLEALAE-----------------------AGVPVLLMSATLPP 382 (733)
T ss_pred HHHhhchhhccHHhhcccchHHHHHHHHHHHHh-----------------------CCCCEEEEecCCCH
Confidence 123468999999988755467777777777653 45789999999974
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=3.8e-09 Score=112.43 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=103.7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+ .|+++|.-+.-.++ +|. |+...||+|||++..+|++...+ .+..|.|++|
T Consensus 75 lg~-r~ydvQlig~l~Ll-~G~--VaEM~TGEGKTLvA~l~a~l~AL-----------------------~G~~VhvvT~ 127 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLL-AGD--VIEMATGEGKTLAGAIAAAGYAL-----------------------QGRRVHVITV 127 (764)
T ss_pred cCC-CcchHHHHHHHHHh-CCC--cccccCCCCHHHHHHHHHHHHHH-----------------------cCCCeEEEcC
Confidence 566 78999998886664 564 77999999999999999887664 2447999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHH-HHHhCC---CccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW-ELMSGG---EKHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~-~~l~~~---~~~~~~l~~i~~lViD 346 (465)
|--||.|=++.+..++..+|++++++.++.+........ .+||+.+|..-|- +.|... .......+.+.+.|||
T Consensus 128 NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVD 205 (764)
T PRK12326 128 NDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIID 205 (764)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeec
Confidence 999999999999999999999999999988876554444 4899999998752 222211 1111235678899999
Q ss_pred chhHhh
Q 012337 347 EADRMI 352 (465)
Q Consensus 347 Eah~ll 352 (465)
|||.||
T Consensus 206 EvDSiL 211 (764)
T PRK12326 206 EADSVL 211 (764)
T ss_pred chhhhe
Confidence 999876
No 125
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.00 E-value=1.4e-10 Score=126.67 Aligned_cols=166 Identities=23% Similarity=0.426 Sum_probs=123.8
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 193 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
|....|+|.++++.+.+.+.+|++++|+|||||.|+-+.++. ..+..++++|+|.-
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------------------------~~~~~~~vyi~p~~ 1196 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------------------------PDTIGRAVYIAPLE 1196 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------------------------CccceEEEEecchH
Confidence 334589999999998877889999999999999998887765 12455899999999
Q ss_pred HHHHHHHHHHHH-HHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHh
Q 012337 273 ELALQVTDHLKE-VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351 (465)
Q Consensus 273 ~La~Qv~~~l~~-l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~l 351 (465)
+.+..++..+.. +....|+.++.+.|..+... .+....+|||+||++ |+++. ...++++.|.||+|.+
T Consensus 1197 ~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~-~d~lq-------~iQ~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1197 EIADEQYRDWEKKFSKLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQ-WDLLQ-------SIQQVDLFIVDELHLI 1265 (1674)
T ss_pred HHHHHHHHHHHHhhccccCceEEecCCccccch---HHhhhcceEEechhH-HHHHh-------hhhhcceEeeehhhhh
Confidence 998887776654 45557888888888877643 244557899999999 45552 3567889999999977
Q ss_pred hhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHH
Q 012337 352 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 412 (465)
Q Consensus 352 l~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 412 (465)
. |....+..++. ++-|+.+|-.+..+++.+|..++|+.+++.
T Consensus 1266 g--g~~g~v~evi~-----------------S~r~ia~q~~k~ir~v~ls~~lana~d~ig 1307 (1674)
T KOG0951|consen 1266 G--GVYGAVYEVIC-----------------SMRYIASQLEKKIRVVALSSSLANARDLIG 1307 (1674)
T ss_pred c--ccCCceEEEEe-----------------eHHHHHHHHHhheeEEEeehhhccchhhcc
Confidence 6 33222222221 133555555588999999999999988843
No 126
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.99 E-value=1.7e-09 Score=112.59 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHH
Q 012337 201 KACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTD 280 (465)
Q Consensus 201 ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~ 280 (465)
.+.+. .+++++-+|+.|.||||||..-...+.+..+ ... .++-+.-|.|-.|.-++.
T Consensus 57 ~~il~-~ve~nqvlIviGeTGsGKSTQipQyL~eaG~--------------------~~~--g~I~~TQPRRVAavslA~ 113 (674)
T KOG0922|consen 57 DQILY-AVEDNQVLIVIGETGSGKSTQIPQYLAEAGF--------------------ASS--GKIACTQPRRVAAVSLAK 113 (674)
T ss_pred HHHHH-HHHHCCEEEEEcCCCCCccccHhHHHHhccc--------------------ccC--CcEEeecCchHHHHHHHH
Confidence 34453 4468889999999999999875444444332 222 236666677766666655
Q ss_pred HHHHHHc-cCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcC-CHH
Q 012337 281 HLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG-HFR 358 (465)
Q Consensus 281 ~l~~l~~-~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~-~~~ 358 (465)
+...-.. .+|-.|++.+- +.........|.++|.|.|++.+-.+ ..|+.+++|||||||. .. +-+
T Consensus 114 RVAeE~~~~lG~~VGY~IR------Fed~ts~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHE---Rsl~TD 180 (674)
T KOG0922|consen 114 RVAEEMGCQLGEEVGYTIR------FEDSTSKDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHE---RSLHTD 180 (674)
T ss_pred HHHHHhCCCcCceeeeEEE------ecccCCCceeEEEecchHHHHHHhcC----CccccccEEEEechhh---hhhHHH
Confidence 5543322 23333333221 11122234689999999999877554 5599999999999994 11 122
Q ss_pred HHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhh
Q 012337 359 ELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 416 (465)
Q Consensus 359 ~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 416 (465)
-+.-+++.+-.. +....+|++|||+- +.-|...+..
T Consensus 181 iLlGlLKki~~~---------------------R~~LklIimSATld-a~kfS~yF~~ 216 (674)
T KOG0922|consen 181 ILLGLLKKILKK---------------------RPDLKLIIMSATLD-AEKFSEYFNN 216 (674)
T ss_pred HHHHHHHHHHhc---------------------CCCceEEEEeeeec-HHHHHHHhcC
Confidence 233333332211 14579999999995 5555555544
No 127
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=6.8e-09 Score=112.46 Aligned_cols=132 Identities=24% Similarity=0.282 Sum_probs=103.4
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|. .|+++|...--. |++| -|+.+.||-|||+++.+|++-+.+ .+..|.||++
T Consensus 82 lG~-r~ydVQliGgl~-Lh~G--~IAEM~TGEGKTL~atlpaylnAL-----------------------~GkgVhVVTv 134 (939)
T PRK12902 82 LGM-RHFDVQLIGGMV-LHEG--QIAEMKTGEGKTLVATLPSYLNAL-----------------------TGKGVHVVTV 134 (939)
T ss_pred hCC-CcchhHHHhhhh-hcCC--ceeeecCCCChhHHHHHHHHHHhh-----------------------cCCCeEEEeC
Confidence 566 788999777644 4555 488999999999999999876543 3446999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-----HHHHhCCCccccccCceeEEEe
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-----WELMSGGEKHLVELHTLSFFVL 345 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-----~~~l~~~~~~~~~l~~i~~lVi 345 (465)
+.-||.+=++.+..+...+|+.|+++.++......... -.+||++||+..| .+.|... ......+.+.+.||
T Consensus 135 NdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~-~~~~vqR~~~faIV 211 (939)
T PRK12902 135 NDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATD-ISEVVQRPFNYCVI 211 (939)
T ss_pred CHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhccc-ccccccCccceEEE
Confidence 99999999999999999999999999888877554433 3689999999988 5555321 11134678899999
Q ss_pred cchhHhh
Q 012337 346 DEADRMI 352 (465)
Q Consensus 346 DEah~ll 352 (465)
||||.||
T Consensus 212 DEvDSIL 218 (939)
T PRK12902 212 DEVDSIL 218 (939)
T ss_pred eccccee
Confidence 9999866
No 128
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.92 E-value=3.5e-08 Score=94.93 Aligned_cols=133 Identities=24% Similarity=0.356 Sum_probs=97.2
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+ .|++.|..++-.+ +.|+ |+...||-|||++..+|++-+.+ .|..|-||+.
T Consensus 74 ~g~-~p~~vQll~~l~L-~~G~--laEm~TGEGKTli~~l~a~~~AL-----------------------~G~~V~vvT~ 126 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALAL-HKGR--LAEMKTGEGKTLIAALPAALNAL-----------------------QGKGVHVVTS 126 (266)
T ss_dssp TS-----HHHHHHHHHH-HTTS--EEEESTTSHHHHHHHHHHHHHHT-----------------------TSS-EEEEES
T ss_pred cCC-cccHHHHhhhhhc-ccce--eEEecCCCCcHHHHHHHHHHHHH-----------------------hcCCcEEEec
Confidence 555 7999999888555 4565 89999999999998888765553 2446999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHH-HHHhCCC---ccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW-ELMSGGE---KHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~-~~l~~~~---~~~~~l~~i~~lViD 346 (465)
..-||.+=++.+..+...+|+.+..++++........... +||+.+|...|. +.|...- ......+.+.++|||
T Consensus 127 NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivD 204 (266)
T PF07517_consen 127 NDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVD 204 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEEC
T ss_pred cHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEe
Confidence 9999999999999999999999999999988655444433 689999999874 3443221 111125788999999
Q ss_pred chhHhh
Q 012337 347 EADRMI 352 (465)
Q Consensus 347 Eah~ll 352 (465)
|||.|+
T Consensus 205 EvDs~L 210 (266)
T PF07517_consen 205 EVDSIL 210 (266)
T ss_dssp THHHHT
T ss_pred ccceEE
Confidence 999876
No 129
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.90 E-value=7.1e-09 Score=110.42 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=93.0
Q ss_pred CCcHHHHHHHHHHH---hcCC-cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 195 EPTPIQKACIPAAA---HQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l---~~~~-dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.++.+|..||..+. .+|+ -+|+++.||+|||.+++. ++..|.+... -.++|+|+-
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~~--------------------~KRVLFLaD 223 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSGW--------------------VKRVLFLAD 223 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcch--------------------hheeeEEec
Confidence 68899999987653 3443 599999999999987544 4444543321 227999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcc--ccccCceeEEEecch
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH--LVELHTLSFFVLDEA 348 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~--~~~l~~i~~lViDEa 348 (465)
+++|+.|.+..+..+.-. +-.+..+.+-.. ...+.|.|+|...+...+...... .+....+++||||||
T Consensus 224 R~~Lv~QA~~af~~~~P~-~~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEa 294 (875)
T COG4096 224 RNALVDQAYGAFEDFLPF-GTKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEA 294 (875)
T ss_pred hHHHHHHHHHHHHHhCCC-ccceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechh
Confidence 999999999998877432 111111111111 114789999999998888654222 233455899999999
Q ss_pred hHhhhcCCHHHHHHHHHhCC
Q 012337 349 DRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 349 h~ll~~~~~~~l~~i~~~l~ 368 (465)
|+=. +.....|++++.
T Consensus 295 HRgi----~~~~~~I~dYFd 310 (875)
T COG4096 295 HRGI----YSEWSSILDYFD 310 (875)
T ss_pred hhhH----HhhhHHHHHHHH
Confidence 9643 333345665553
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.86 E-value=1.1e-08 Score=110.91 Aligned_cols=132 Identities=23% Similarity=0.258 Sum_probs=100.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+ .|+++|.-+.- +++ +.-|+.+.||.|||+++.+|++-+.+ .+..|.||++
T Consensus 73 lG~-r~ydvQlig~l-~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL-----------------------~G~~VhVvT~ 125 (870)
T CHL00122 73 LGL-RHFDVQLIGGL-VLN--DGKIAEMKTGEGKTLVATLPAYLNAL-----------------------TGKGVHIVTV 125 (870)
T ss_pred hCC-CCCchHhhhhH-hhc--CCccccccCCCCchHHHHHHHHHHHh-----------------------cCCceEEEeC
Confidence 566 68899977763 333 45688999999999999999854332 2446999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-----HHHHhCCCccccccCceeEEEe
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-----WELMSGGEKHLVELHTLSFFVL 345 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-----~~~l~~~~~~~~~l~~i~~lVi 345 (465)
+..||.+-++.+..+...+|+.|+++.++.+........ .+||+.+|..-| .+.|... ......+.+.+.||
T Consensus 126 NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~-~~~~v~r~~~faIV 202 (870)
T CHL00122 126 NDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALS-LSDVVQRPFNYCII 202 (870)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcC-hHHhhccccceeee
Confidence 999999999999999999999999999988876554443 479999999754 3333211 11123577889999
Q ss_pred cchhHhh
Q 012337 346 DEADRMI 352 (465)
Q Consensus 346 DEah~ll 352 (465)
||||.||
T Consensus 203 DEvDSiL 209 (870)
T CHL00122 203 DEVDSIL 209 (870)
T ss_pred ecchhhe
Confidence 9999876
No 131
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.85 E-value=7e-09 Score=107.33 Aligned_cols=161 Identities=22% Similarity=0.231 Sum_probs=99.0
Q ss_pred cHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHH
Q 012337 197 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~ 276 (465)
.++-.+.+.++ ...+-+|+.|.||||||......+.+.-+. ..+-++=+.-|.|-.|.
T Consensus 267 y~ykdell~av-~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt---------------------k~gk~IgcTQPRRVAAm 324 (902)
T KOG0923|consen 267 YPYKDELLKAV-KEHQVLIIVGETGSGKTTQIPQYLYEAGYT---------------------KGGKKIGCTQPRRVAAM 324 (902)
T ss_pred hhhHHHHHHHH-HhCcEEEEEcCCCCCccccccHHHHhcccc---------------------cCCceEeecCcchHHHH
Confidence 44455666555 678899999999999998854444443321 12234556667777777
Q ss_pred HHHHHHHHH-HccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH-hh-h
Q 012337 277 QVTDHLKEV-AKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-MI-E 353 (465)
Q Consensus 277 Qv~~~l~~l-~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~-ll-~ 353 (465)
-|+.++.+- ...+|..|++-+ .+........-|-++|.|.|++-+... ..|++++++||||||. -+ -
T Consensus 325 SVAaRVA~EMgvkLG~eVGYsI------RFEdcTSekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~T 394 (902)
T KOG0923|consen 325 SVAARVAEEMGVKLGHEVGYSI------RFEDCTSEKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHT 394 (902)
T ss_pred HHHHHHHHHhCcccccccceEE------EeccccCcceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhh
Confidence 776655432 222222222111 112222345679999999999877554 6799999999999994 11 1
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhh
Q 012337 354 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 415 (465)
Q Consensus 354 ~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 415 (465)
.-.+.-|..|...- +...+++.|||+- +..|...+.
T Consensus 395 DILfgLvKDIar~R-------------------------pdLKllIsSAT~D-AekFS~fFD 430 (902)
T KOG0923|consen 395 DILFGLVKDIARFR-------------------------PDLKLLISSATMD-AEKFSAFFD 430 (902)
T ss_pred hHHHHHHHHHHhhC-------------------------CcceEEeeccccC-HHHHHHhcc
Confidence 11233333333222 5789999999995 666666654
No 132
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.83 E-value=1.4e-08 Score=113.40 Aligned_cols=131 Identities=23% Similarity=0.206 Sum_probs=83.7
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 195 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
.|.|+|..++..++.. ...+|+.-.+|-|||+.+.+.+...++.. ..-++|||||+ .
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---------------------~~~rvLIVvP~-s 209 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---------------------RAERVLILVPE-T 209 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---------------------CCCcEEEEcCH-H
Confidence 6999999988776532 23689999999999998876655444321 12369999997 8
Q ss_pred HHHHHHHHHHHHHccCCceEEEEecCCCHHHHH--HHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHh
Q 012337 274 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE--RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351 (465)
Q Consensus 274 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~--~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~l 351 (465)
|+.|+..++...+ ++.+..+.++....... .......+++|||...|...-. ......-...++|||||||+|
T Consensus 210 L~~QW~~El~~kF---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~--~~~~l~~~~wdlvIvDEAH~l 284 (956)
T PRK04914 210 LQHQWLVEMLRRF---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQ--RLEQALAAEWDLLVVDEAHHL 284 (956)
T ss_pred HHHHHHHHHHHHh---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHH--HHHHHhhcCCCEEEEechhhh
Confidence 9999999997654 44444443332111000 0111246899999887753110 000011246789999999998
Q ss_pred h
Q 012337 352 I 352 (465)
Q Consensus 352 l 352 (465)
-
T Consensus 285 k 285 (956)
T PRK04914 285 V 285 (956)
T ss_pred c
Confidence 6
No 133
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.82 E-value=4.5e-08 Score=107.32 Aligned_cols=65 Identities=31% Similarity=0.346 Sum_probs=50.7
Q ss_pred CCCCCcHHHHHHHHHH---Hhc-----CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 012337 192 GFKEPTPIQKACIPAA---AHQ-----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 263 (465)
Q Consensus 192 g~~~p~~iQ~~~i~~~---l~~-----~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (465)
|| .+++-|.+.+..+ +.+ +..+++.|+||+|||++|++|++-..... +-
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~----------------------~k 79 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE----------------------KK 79 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc----------------------CC
Confidence 55 7899998755443 444 36789999999999999999998655322 23
Q ss_pred EEEEEcccHHHHHHHH
Q 012337 264 RALIITPTRELALQVT 279 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~ 279 (465)
+|||-+.|+.|-.|+.
T Consensus 80 ~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 80 KLVISTATVALQEQLV 95 (697)
T ss_pred eEEEEcCCHHHHHHHH
Confidence 7999999999999985
No 134
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.75 E-value=5.8e-08 Score=97.57 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=92.0
Q ss_pred CCcHHHHHHHHHHHhcCC----cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 195 EPTPIQKACIPAAAHQGK----DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~----dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.+-|+|.+.+.++..+.. --|+.-..|.|||...+..+|..+ .+-..|||+|
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~------------------------~ra~tLVvaP 239 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV------------------------DRAPTLVVAP 239 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc------------------------ccCCeeEEcc
Confidence 678999999877654333 246677899999988766666533 1224899999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC----------ccccccCce
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE----------KHLVELHTL 340 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~----------~~~~~l~~i 340 (465)
+.+| .|+.+++..+.. -.+++...+|... ......+ .++|++++|...+.......+ .....|+++
T Consensus 240 ~VAl-mQW~nEI~~~T~-gslkv~~YhG~~R-~~nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi 315 (791)
T KOG1002|consen 240 TVAL-MQWKNEIERHTS-GSLKVYIYHGAKR-DKNIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSI 315 (791)
T ss_pred HHHH-HHHHHHHHHhcc-CceEEEEEecccc-cCCHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhc
Confidence 9998 699999998876 2456666665543 2333333 358999999999988776521 112236777
Q ss_pred eE--EEecchhHhhhc
Q 012337 341 SF--FVLDEADRMIEN 354 (465)
Q Consensus 341 ~~--lViDEah~ll~~ 354 (465)
.+ +|+||||.|-+.
T Consensus 316 ~~~RiIlDEAH~IK~R 331 (791)
T KOG1002|consen 316 KFYRIILDEAHNIKDR 331 (791)
T ss_pred eeeeeehhhhcccccc
Confidence 65 899999987653
No 135
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.74 E-value=5.5e-08 Score=101.05 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHH
Q 012337 199 IQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 278 (465)
Q Consensus 199 iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv 278 (465)
.+.+.+..+ ..++-||+.+.||||||......+++.-| ...+ -+-+.-|.|..|.-|
T Consensus 360 ~R~~ll~~i-r~n~vvvivgETGSGKTTQl~QyL~edGY--------------------~~~G--mIGcTQPRRvAAiSV 416 (1042)
T KOG0924|consen 360 CRDQLLSVI-RENQVVVIVGETGSGKTTQLAQYLYEDGY--------------------ADNG--MIGCTQPRRVAAISV 416 (1042)
T ss_pred HHHHHHHHH-hhCcEEEEEecCCCCchhhhHHHHHhccc--------------------ccCC--eeeecCchHHHHHHH
Confidence 334444333 56778899999999999885554444332 2111 344455777777777
Q ss_pred HHHHHHHHc-cCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCH
Q 012337 279 TDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF 357 (465)
Q Consensus 279 ~~~l~~l~~-~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~ 357 (465)
+..+..-.. .+|-.|++.+- +...-....-|-++|.|.|++-.-.+ ..|..+++||+||||.=. -+.
T Consensus 417 AkrVa~EM~~~lG~~VGYsIR------FEdvT~~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERs--lNt 484 (1042)
T KOG0924|consen 417 AKRVAEEMGVTLGDTVGYSIR------FEDVTSEDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERS--LNT 484 (1042)
T ss_pred HHHHHHHhCCccccccceEEE------eeecCCCceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcc--cch
Confidence 776655332 22322222111 11111134569999999998754332 558899999999999511 122
Q ss_pred HHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhh
Q 012337 358 RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 415 (465)
Q Consensus 358 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 415 (465)
+.+.-|++.+-.. +....+|++|||+- +.-|.+.++
T Consensus 485 DilfGllk~~lar---------------------RrdlKliVtSATm~-a~kf~nfFg 520 (1042)
T KOG0924|consen 485 DILFGLLKKVLAR---------------------RRDLKLIVTSATMD-AQKFSNFFG 520 (1042)
T ss_pred HHHHHHHHHHHHh---------------------hccceEEEeecccc-HHHHHHHhC
Confidence 3333333222110 14678999999995 666777776
No 136
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.73 E-value=7.4e-10 Score=119.57 Aligned_cols=183 Identities=21% Similarity=0.266 Sum_probs=138.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 193 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
+..+.|+|.+.+..+.+-..++++.+|||+|||++|-+.++..+. ..++.+|+||+|-.
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~---------------------~~p~~kvvyIap~k 983 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALS---------------------YYPGSKVVYIAPDK 983 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhc---------------------cCCCccEEEEcCCc
Confidence 335667888877666555668899999999999999998876653 23456899999999
Q ss_pred HHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhh
Q 012337 273 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 273 ~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll 352 (465)
+|+..-.+.+.......|++++.+.|....... -...++|+|+||.+.-.+..+ +.....+.++..+|+||.|++.
T Consensus 984 alvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rs-w~~r~~v~~v~~iv~de~hllg 1059 (1230)
T KOG0952|consen 984 ALVKERSDDWSKRDELPGIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRS-WQTRKYVQSVSLIVLDEIHLLG 1059 (1230)
T ss_pred hhhcccccchhhhcccCCceeEeccCccCCChh---heecCceEEcccccccCcccc-ccchhhhccccceeeccccccc
Confidence 999988888877665558999998888776522 123579999999996655543 4444568899999999999876
Q ss_pred hcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhcc
Q 012337 353 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 418 (465)
Q Consensus 353 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 418 (465)
.+++..++.|....+. +..+....+|.+++|--++|+.+..+||....
T Consensus 1060 -~~rgPVle~ivsr~n~-----------------~s~~t~~~vr~~glsta~~na~dla~wl~~~~ 1107 (1230)
T KOG0952|consen 1060 -EDRGPVLEVIVSRMNY-----------------ISSQTEEPVRYLGLSTALANANDLADWLNIKD 1107 (1230)
T ss_pred -CCCcceEEEEeecccc-----------------CccccCcchhhhhHhhhhhccHHHHHHhCCCC
Confidence 6666666666655553 33334478899999999999999999997643
No 137
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.72 E-value=7.7e-08 Score=96.64 Aligned_cols=187 Identities=19% Similarity=0.169 Sum_probs=112.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
...|+.++.+++..+-+++.. .-|---|+.-+..++.+++-+++.|.||||||...-.+++...+..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~-~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~------------ 90 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRR-ELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH------------ 90 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHh-cCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh------------
Confidence 456778888888777666532 1233456667777778899999999999999998666666655322
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHc-cCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~-~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
...|...-|.|-.|.+++.+...-.. .+|-.|++.+- +..-...+.-+-+||.+.|++-.-++
T Consensus 91 ----------~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIr------fEdC~~~~T~Lky~tDgmLlrEams~ 154 (699)
T KOG0925|consen 91 ----------LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIR------FEDCTSPNTLLKYCTDGMLLREAMSD 154 (699)
T ss_pred ----------ccceeecCchHHHHHHHHHHHHHHhccccchhcccccc------ccccCChhHHHHHhcchHHHHHHhhC
Confidence 12477788888888888776654321 11222211110 10000111223467888887654332
Q ss_pred CccccccCceeEEEecchhH-hhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHH
Q 012337 331 EKHLVELHTLSFFVLDEADR-MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSAD 409 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~-ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~ 409 (465)
..|.++.+||+||||. -+ --+.+.-+++.+... ++...+|+||||+- +.-
T Consensus 155 ----p~l~~y~viiLDeahERtl---ATDiLmGllk~v~~~---------------------rpdLk~vvmSatl~-a~K 205 (699)
T KOG0925|consen 155 ----PLLGRYGVIILDEAHERTL---ATDILMGLLKEVVRN---------------------RPDLKLVVMSATLD-AEK 205 (699)
T ss_pred ----cccccccEEEechhhhhhH---HHHHHHHHHHHHHhh---------------------CCCceEEEeecccc-hHH
Confidence 5589999999999995 11 112222233222211 15789999999995 445
Q ss_pred HHHHhhh
Q 012337 410 FRKKLKH 416 (465)
Q Consensus 410 ~~~~l~~ 416 (465)
|...+..
T Consensus 206 fq~yf~n 212 (699)
T KOG0925|consen 206 FQRYFGN 212 (699)
T ss_pred HHHHhCC
Confidence 5555543
No 138
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.61 E-value=4.9e-07 Score=95.39 Aligned_cols=144 Identities=21% Similarity=0.235 Sum_probs=98.3
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l---~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.+.++|.+.+.+++ ++|-+.|+.-..|-|||+.. +.+|.++... .+..|| -|||+|.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~------------------~~~~GP-fLVi~P~ 226 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGR------------------KGIPGP-FLVIAPK 226 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHh------------------cCCCCC-eEEEeeH
Confidence 68999999887764 47888999999999999874 3344444321 123444 6889998
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHH-HH--HHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecch
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ-ER--LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~-~~--~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEa 348 (465)
.-| ..+.++|.+++. ++.+++++|....... .+ ......+|+|+|.+..+.-- ..+.--..++||||||
T Consensus 227 StL-~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk-----~~lk~~~W~ylvIDEa 298 (971)
T KOG0385|consen 227 STL-DNWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK-----SFLKKFNWRYLVIDEA 298 (971)
T ss_pred hhH-HHHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH-----HHHhcCCceEEEechh
Confidence 777 567888888864 6788888887643211 11 12236899999998875421 1122235689999999
Q ss_pred hHhhhcCCHHHHHHHHHhCC
Q 012337 349 DRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 349 h~ll~~~~~~~l~~i~~~l~ 368 (465)
|+|-.. -..+..++..++
T Consensus 299 HRiKN~--~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 299 HRIKNE--KSKLSKILREFK 316 (971)
T ss_pred hhhcch--hhHHHHHHHHhc
Confidence 999633 445567777765
No 139
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.60 E-value=1.6e-07 Score=102.99 Aligned_cols=73 Identities=33% Similarity=0.391 Sum_probs=58.5
Q ss_pred CCCCCCcHHHHHHHHH---HHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012337 191 LGFKEPTPIQKACIPA---AAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 267 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~---~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 267 (465)
+....+++.|.+.+.. ++.++..+++.||||+|||++|++|++...... +.+++|
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~----------------------~~~vii 68 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE----------------------GKKVII 68 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc----------------------CCcEEE
Confidence 3444899999877644 455677799999999999999999999877533 247999
Q ss_pred EcccHHHHHHHHHHHHHH
Q 012337 268 ITPTRELALQVTDHLKEV 285 (465)
Q Consensus 268 l~Ptr~La~Qv~~~l~~l 285 (465)
.++|+.|-.|+.+....+
T Consensus 69 st~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 69 STRTKALQEQLLEEDLPI 86 (654)
T ss_pred ECCCHHHHHHHHHhhcch
Confidence 999999999988776654
No 140
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=3.1e-07 Score=101.25 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=54.7
Q ss_pred CCCCCCcHHHHHHHHHH---HhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012337 191 LGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 267 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~---l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 267 (465)
+.|..++|.|.+.+..+ +.++.++++.+|||+|||++.+.|+|..+.... ..++++|
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------------------~~~kIiy 65 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------------------EVRKIIY 65 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------------------ccccEEE
Confidence 35666799998776554 457889999999999999999999998764321 1246666
Q ss_pred EcccHHHHHHHHHHHHHH
Q 012337 268 ITPTRELALQVTDHLKEV 285 (465)
Q Consensus 268 l~Ptr~La~Qv~~~l~~l 285 (465)
.+.|..=..|+.++++++
T Consensus 66 ~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 66 ASRTHSQLEQATEELRKL 83 (705)
T ss_pred EcccchHHHHHHHHHHhh
Confidence 666666666666666664
No 141
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.56 E-value=5.1e-07 Score=97.87 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=101.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
+|. .|+++|.-..-. |+.|+ |+...||-|||++..+|++-+.+ .|..|-||+.
T Consensus 75 lG~-r~ydVQliGglv-Lh~G~--IAEMkTGEGKTLvAtLpayLnAL-----------------------~GkgVhVVTv 127 (925)
T PRK12903 75 LGK-RPYDVQIIGGII-LDLGS--VAEMKTGEGKTITSIAPVYLNAL-----------------------TGKGVIVSTV 127 (925)
T ss_pred hCC-CcCchHHHHHHH-HhcCC--eeeecCCCCccHHHHHHHHHHHh-----------------------cCCceEEEec
Confidence 566 789999887744 46664 78999999999999999864433 2446899999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCC---ccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~i~~lViD 346 (465)
.--||.+=+..+..+...+|+.|+++..+.......... .|||.+||..-| .+.|...- ......+.+.+.|||
T Consensus 128 NdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVD 205 (925)
T PRK12903 128 NEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLID 205 (925)
T ss_pred chhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeec
Confidence 999999999999999999999999999888776554444 489999999876 23343211 111235778899999
Q ss_pred chhHhh
Q 012337 347 EADRMI 352 (465)
Q Consensus 347 Eah~ll 352 (465)
|+|.||
T Consensus 206 EVDSIL 211 (925)
T PRK12903 206 EVDSIL 211 (925)
T ss_pred cchhee
Confidence 999876
No 142
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.51 E-value=1.3e-07 Score=95.24 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=99.2
Q ss_pred CCCcHHHHHHHHHHHhcCC--cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 194 KEPTPIQKACIPAAAHQGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~--dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
..++|+|..++..++-||+ .-|+..|.|+|||++-+-.++. + +.++|+|+.+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i-------------------------kK~clvLcts 354 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I-------------------------KKSCLVLCTS 354 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e-------------------------cccEEEEecC
Confidence 3789999999999987775 6789999999999885544331 1 2369999999
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC-----ccccccCceeEEEec
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-----KHLVELHTLSFFVLD 346 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~-----~~~~~l~~i~~lViD 346 (465)
--.+.|+...|..++.--.-.++.+++.... ....++.|+|+|..++..-=.+.. ...+.-....++|+|
T Consensus 355 ~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllD 429 (776)
T KOG1123|consen 355 AVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLD 429 (776)
T ss_pred ccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEee
Confidence 9999999999998875555567766665432 234678999999877632111100 001123567889999
Q ss_pred chhHhhhcCCHHHHHHHHHh
Q 012337 347 EADRMIENGHFRELQSIIDM 366 (465)
Q Consensus 347 Eah~ll~~~~~~~l~~i~~~ 366 (465)
|+|.+-. .++..+..|+..
T Consensus 430 EVHvvPA-~MFRRVlsiv~a 448 (776)
T KOG1123|consen 430 EVHVVPA-KMFRRVLSIVQA 448 (776)
T ss_pred hhccchH-HHHHHHHHHHHH
Confidence 9998873 356666666643
No 143
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.49 E-value=7e-07 Score=98.59 Aligned_cols=166 Identities=25% Similarity=0.239 Sum_probs=103.6
Q ss_pred CCcHHHHHHHHHHHh-------cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012337 195 EPTPIQKACIPAAAH-------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 267 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~-------~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 267 (465)
.-+.+|-.|+..+.. +|-=+|-.|.||+|||++=.=. +..+ .....++|..|
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARI-myaL--------------------sd~~~g~Rfsi 466 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARA-MYAL--------------------RDDKQGARFAI 466 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHH-HHHh--------------------CCCCCCceEEE
Confidence 346789888877632 2334667799999999873221 1111 12345678888
Q ss_pred EcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHH----------------------------------------
Q 012337 268 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---------------------------------------- 307 (465)
Q Consensus 268 l~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~---------------------------------------- 307 (465)
-+-.|.|..|.-+.+++-..--.-..++++|+.....-..
T Consensus 467 ALGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~ 546 (1110)
T TIGR02562 467 ALGLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIE 546 (1110)
T ss_pred EccccceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchh
Confidence 8889999999988888765433445666666644321110
Q ss_pred ---HHhC--------CCcEEEeChHHHHHHHhC--CCcccc---ccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCC
Q 012337 308 ---LLKA--------RPELVVGTPGRLWELMSG--GEKHLV---ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 371 (465)
Q Consensus 308 ---~~~~--------~~dIiV~TP~~L~~~l~~--~~~~~~---~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~ 371 (465)
.+.. ...|+|||+..|+..... +..... .|. -+.|||||+|..- ......|..++..+..
T Consensus 547 l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La-~svlVlDEVHaYD-~~~~~~L~rlL~w~~~-- 622 (1110)
T TIGR02562 547 LLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLM-SSDLILDEPDDYE-PEDLPALLRLVQLAGL-- 622 (1110)
T ss_pred hhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhc-CCCEEEECCccCC-HHHHHHHHHHHHHHHH--
Confidence 0000 168999999999877632 111111 121 2579999999753 4445556666654331
Q ss_pred CCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 372 GSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
....+|+||||||.
T Consensus 623 ---------------------lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 623 ---------------------LGSRVLLSSATLPP 636 (1110)
T ss_pred ---------------------cCCCEEEEeCCCCH
Confidence 45789999999985
No 144
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.48 E-value=1e-06 Score=95.57 Aligned_cols=138 Identities=14% Similarity=0.183 Sum_probs=95.6
Q ss_pred CCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEec
Q 012337 219 ETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG 298 (465)
Q Consensus 219 ~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~g 298 (465)
.+|||||.+|+-.+-..+.. +.++|||+|...|+.|+...|...+. +..++.+++
T Consensus 168 ~~GSGKTevyl~~i~~~l~~-----------------------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS 222 (665)
T PRK14873 168 LPGEDWARRLAAAAAATLRA-----------------------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSA 222 (665)
T ss_pred CCCCcHHHHHHHHHHHHHHc-----------------------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECC
Confidence 35999999998766655521 34799999999999999999998753 257888999
Q ss_pred CCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhh-hcC-----CHHHHHHHHHhCC
Q 012337 299 GMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI-ENG-----HFRELQSIIDMLP 368 (465)
Q Consensus 299 g~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll-~~~-----~~~~l~~i~~~l~ 368 (465)
+.+.......+ .+...|+|||-..+ +..+.++.+|||||=|.-. ..+ +...+-..+..+
T Consensus 223 ~l~~~~R~~~w~~~~~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~- 291 (665)
T PRK14873 223 GLGPADRYRRWLAVLRGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ- 291 (665)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH-
Confidence 98876544433 34579999997654 2568899999999998422 111 122333333332
Q ss_pred CCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhcc
Q 012337 369 MTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGS 418 (465)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~ 418 (465)
....+|+.|||.+ .+...+...+.
T Consensus 292 ------------------------~~~~lvLgSaTPS--les~~~~~~g~ 315 (665)
T PRK14873 292 ------------------------HGCALLIGGHART--AEAQALVESGW 315 (665)
T ss_pred ------------------------cCCcEEEECCCCC--HHHHHHHhcCc
Confidence 5678999999985 44444444443
No 145
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.45 E-value=3.2e-06 Score=93.57 Aligned_cols=120 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHH--------
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK-------- 283 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~-------- 283 (465)
.++.+.++||+|||++|+-.|+..... .+..+.||+||+.+.-..+.+.+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~---------------------~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF 118 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK---------------------YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHF 118 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH---------------------cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHH
Confidence 478999999999999998877665321 234579999999987766665443
Q ss_pred -HHHccCCceEEEEecCC-------CHHHHHHHHh-------CCCcEEEeChHHHHHHHh----------CCC-cccccc
Q 012337 284 -EVAKGINVRVVPIVGGM-------STEKQERLLK-------ARPELVVGTPGRLWELMS----------GGE-KHLVEL 337 (465)
Q Consensus 284 -~l~~~~~~~v~~~~gg~-------~~~~~~~~~~-------~~~dIiV~TP~~L~~~l~----------~~~-~~~~~l 337 (465)
....+..++...+.++. ......+.+. +...|+|+|-+.|..-.. .+. .....+
T Consensus 119 ~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i 198 (986)
T PRK15483 119 SQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDAL 198 (986)
T ss_pred HHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHH
Confidence 22222334555554433 1111211111 146899999998854211 011 111112
Q ss_pred Cce-eEEEecchhHhh
Q 012337 338 HTL-SFFVLDEADRMI 352 (465)
Q Consensus 338 ~~i-~~lViDEah~ll 352 (465)
... -+||+||+|++-
T Consensus 199 ~~~~PivIiDEPh~~~ 214 (986)
T PRK15483 199 AATRPVVIIDEPHRFP 214 (986)
T ss_pred HhCCCEEEEECCCCCC
Confidence 222 368999999985
No 146
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.28 E-value=6.2e-06 Score=87.66 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHh---cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 012337 178 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH---QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 254 (465)
Q Consensus 178 l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~---~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 254 (465)
+.++..|.. .++++|+.++.++.. ++.--|+.-..|-|||...+.. |..++..
T Consensus 196 ~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisF-LaaL~~S--------------- 251 (923)
T KOG0387|consen 196 FKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISF-LAALHHS--------------- 251 (923)
T ss_pred ccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHH-HHHHhhc---------------
Confidence 455666533 567999999877632 4556788899999999864322 2222211
Q ss_pred hhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHH---------HHHH----HHhCCCcEEEeChH
Q 012337 255 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE---------KQER----LLKARPELVVGTPG 321 (465)
Q Consensus 255 ~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~---------~~~~----~~~~~~dIiV~TP~ 321 (465)
.... -.||||||.- ++.|+.++|..++. .++|..++|..+.. .... ....+..|+|+|..
T Consensus 252 ---~k~~-~paLIVCP~T-ii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~ 324 (923)
T KOG0387|consen 252 ---GKLT-KPALIVCPAT-IIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYD 324 (923)
T ss_pred ---cccc-CceEEEccHH-HHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehh
Confidence 0112 3599999965 66899999998854 67888888766521 1111 11224579999998
Q ss_pred HHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhC
Q 012337 322 RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 367 (465)
Q Consensus 322 ~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l 367 (465)
.+.- .. ..+.-....++|+||.|+|-... ..+...+..+
T Consensus 325 ~~r~-~~----d~l~~~~W~y~ILDEGH~IrNpn--s~islackki 363 (923)
T KOG0387|consen 325 GFRI-QG----DDLLGILWDYVILDEGHRIRNPN--SKISLACKKI 363 (923)
T ss_pred hhcc-cC----cccccccccEEEecCcccccCCc--cHHHHHHHhc
Confidence 8642 11 11222356789999999997432 3344444444
No 147
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.22 E-value=2.3e-05 Score=84.88 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=103.4
Q ss_pred CCcHHHHHHHHHHHh---------cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEE
Q 012337 195 EPTPIQKACIPAAAH---------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRA 265 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~---------~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 265 (465)
.+.|+|++.+.-+.. +..-.|++-..|+|||+..+..+...+ +.. +.....--+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlL-rq~---------------P~~~~~~~k~ 301 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLL-RQF---------------PQAKPLINKP 301 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHH-HhC---------------cCcccccccc
Confidence 578999999865421 111245555679999988655444443 321 1111122578
Q ss_pred EEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCH--HHHHHHH-----hCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 266 LIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST--EKQERLL-----KARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 266 Lil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~--~~~~~~~-----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
|||+| ..|+.-+.++|.++.....+....++|..+. ......+ .-..-|++.+.+.+.+.+.. ..+.
T Consensus 302 lVV~P-~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~ 375 (776)
T KOG0390|consen 302 LVVAP-SSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLI 375 (776)
T ss_pred EEEcc-HHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcC
Confidence 99999 4688999999999876556677777777764 1111111 11246888888888766642 4467
Q ss_pred ceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 339 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
.+.+||+||.|++-.. -..+...+..+. .++-|++|.|+-
T Consensus 376 ~~glLVcDEGHrlkN~--~s~~~kaL~~l~-------------------------t~rRVLLSGTp~ 415 (776)
T KOG0390|consen 376 RPGLLVCDEGHRLKNS--DSLTLKALSSLK-------------------------TPRRVLLTGTPI 415 (776)
T ss_pred CCCeEEECCCCCccch--hhHHHHHHHhcC-------------------------CCceEEeeCCcc
Confidence 8899999999998632 233444455553 455677899985
No 148
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.22 E-value=1.8e-05 Score=89.57 Aligned_cols=141 Identities=22% Similarity=0.192 Sum_probs=91.6
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCc
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 291 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~ 291 (465)
+.-+++=-||||||++.+..+ ..++.. ...|.+|||+-.+.|-.|+.+.|..+......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~--------------------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~ 332 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL--------------------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN 332 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc--------------------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh
Confidence 458999999999998743322 222211 34679999999999999999999998653222
Q ss_pred eEEEEecCCCHHHHHHHHhCC-CcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCC
Q 012337 292 RVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 370 (465)
Q Consensus 292 ~v~~~~gg~~~~~~~~~~~~~-~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~ 370 (465)
.. ...+.....+.+... ..|||+|-..|-..+.........-..+ +||+||||+-- ++..-..+...++
T Consensus 333 ~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~i-vvI~DEaHRSQ---~G~~~~~~~~~~~-- 402 (962)
T COG0610 333 DP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNV-VVIIDEAHRSQ---YGELAKLLKKALK-- 402 (962)
T ss_pred cc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcE-EEEEechhhcc---ccHHHHHHHHHhc--
Confidence 11 344555556666644 4899999999988875431111112233 67899999753 3333333334443
Q ss_pred CCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 371 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
....++||.|.-.
T Consensus 403 -----------------------~a~~~gFTGTPi~ 415 (962)
T COG0610 403 -----------------------KAIFIGFTGTPIF 415 (962)
T ss_pred -----------------------cceEEEeeCCccc
Confidence 4678899999753
No 149
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.22 E-value=6.9e-06 Score=90.04 Aligned_cols=141 Identities=21% Similarity=0.259 Sum_probs=94.3
Q ss_pred CCcHHHHHHHHHHHh---cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAAH---QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~---~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.++.||...+.++.. ++-|-|+.-..|-|||.. .|.+|.|+..... .=|| -||||||
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeeg------------------nWGP-HLIVVpT 674 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEG------------------NWGP-HLIVVPT 674 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhccc------------------CCCC-ceEEeec
Confidence 577899998877632 344778999999999976 4556666644321 1233 6899999
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH-H-h-CCCcEEEeChHHHHHHHhCCCccccccCceeEEEecch
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL-L-K-ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~-~-~-~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEa 348 (465)
-.+ ..|.-+|+.+|- +++|..++|........+. | + +..+|.|+++.-+..-+. .+.-....|||||||
T Consensus 675 svi-LnWEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~-----AFkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 675 SVI-LNWEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT-----AFKRKRWQYLVLDEA 746 (1958)
T ss_pred hhh-hhhhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH-----HHHhhccceeehhhh
Confidence 875 457778888874 7899889987643322111 1 1 246899999877765442 233467789999999
Q ss_pred hHhhhcCCHHHHHHHH
Q 012337 349 DRMIENGHFRELQSII 364 (465)
Q Consensus 349 h~ll~~~~~~~l~~i~ 364 (465)
|+|-.+. ..+++.++
T Consensus 747 qnIKnfk-sqrWQAll 761 (1958)
T KOG0391|consen 747 QNIKNFK-SQRWQALL 761 (1958)
T ss_pred hhhcchh-HHHHHHHh
Confidence 9986442 34445444
No 150
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.21 E-value=3.4e-06 Score=92.85 Aligned_cols=130 Identities=22% Similarity=0.275 Sum_probs=96.5
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+++|.-.--. |++|+ |+...||-|||++..||++-+.+ +|..|-||+..--|
T Consensus 138 ~~ydVQLiGgiv-Lh~G~--IAEM~TGEGKTLvatlp~yLnAL-----------------------~G~gVHvVTvNDYL 191 (1025)
T PRK12900 138 VPYDVQLIGGIV-LHSGK--ISEMATGEGKTLVSTLPTFLNAL-----------------------TGRGVHVVTVNDYL 191 (1025)
T ss_pred cccchHHhhhHH-hhcCC--ccccCCCCCcchHhHHHHHHHHH-----------------------cCCCcEEEeechHh
Confidence 577888766533 45565 78999999999999999865554 23458888888899
Q ss_pred HHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCC---CccccccCceeEEEecchhH
Q 012337 275 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLDEADR 350 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~---~~~~~~l~~i~~lViDEah~ 350 (465)
|.+=++.+..+...+|+.|+++..+.+....... -.|||.+||..-| .+.|... .......+.+.+.||||+|.
T Consensus 192 A~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~a--Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDS 269 (1025)
T PRK12900 192 AQRDKEWMNPVFEFHGLSVGVILNTMRPEERREQ--YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDS 269 (1025)
T ss_pred hhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhh
Confidence 9999999999999999999999887776554433 3589999998765 2233211 01112357788999999998
Q ss_pred hh
Q 012337 351 MI 352 (465)
Q Consensus 351 ll 352 (465)
+|
T Consensus 270 vL 271 (1025)
T PRK12900 270 VL 271 (1025)
T ss_pred hh
Confidence 66
No 151
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.21 E-value=4.4e-06 Score=78.68 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHHhcCCc-EEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 196 PTPIQKACIPAAAHQGKD-IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 196 p~~iQ~~~i~~~l~~~~d-vl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
+.+-|..++..++ +... .+++||.|+|||.+.. .++..++.... ......+.++||++||...
T Consensus 2 ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~--------------~~~~~~~~~il~~~~sN~a 65 (236)
T PF13086_consen 2 LNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFK--------------SRSADRGKKILVVSPSNAA 65 (236)
T ss_dssp --HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHH-HHHHHH---------------------HCCCSS-EEEEESSHHH
T ss_pred CCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHH-HHHHHhccchh--------------hhhhhccccceeecCCchh
Confidence 5789999998886 5666 8999999999995533 34444422100 0012345689999999999
Q ss_pred HHHHHHHHHH
Q 012337 275 ALQVTDHLKE 284 (465)
Q Consensus 275 a~Qv~~~l~~ 284 (465)
+..+...+.+
T Consensus 66 vd~~~~~l~~ 75 (236)
T PF13086_consen 66 VDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 9999999887
No 152
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.16 E-value=6.1e-06 Score=87.64 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=91.3
Q ss_pred CCcHHHHHHHHHHHh---cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAAH---QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~---~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.+-++|.-.+.+++. ++-+.|+.-..|-|||... +..|..+.+. +.++| -|||||.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~-------------------g~~gp-HLVVvPs 457 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQI-------------------GNPGP-HLVVVPS 457 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHc-------------------CCCCC-cEEEecc
Confidence 478899888876532 3446788999999999653 3344444321 23444 6899998
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCccccccCceeEEEecc
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDE 347 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDE 347 (465)
--| .-|.++|.++|. .++|...+|........+... .+.+|||+|+..... ...++.++.-.++.++|+||
T Consensus 458 STl-eNWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~--~kdDRsflk~~~~n~viyDE 532 (941)
T KOG0389|consen 458 STL-ENWLREFAKWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAAS--SKDDRSFLKNQKFNYVIYDE 532 (941)
T ss_pred hhH-HHHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccC--ChHHHHHHHhccccEEEecc
Confidence 776 456677777764 678888899875444333221 268999999854421 11122333346788999999
Q ss_pred hhHhhhcC--CHHHHHHH
Q 012337 348 ADRMIENG--HFRELQSI 363 (465)
Q Consensus 348 ah~ll~~~--~~~~l~~i 363 (465)
+|.|-++. .|.+++.|
T Consensus 533 gHmLKN~~SeRy~~LM~I 550 (941)
T KOG0389|consen 533 GHMLKNRTSERYKHLMSI 550 (941)
T ss_pred hhhhhccchHHHHHhccc
Confidence 99776543 24444433
No 153
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.10 E-value=1.3e-05 Score=88.72 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=99.3
Q ss_pred CCcHHHHHHHHHH--HhcCC-cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAA--AHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~--l~~~~-dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.++.+|++.+.++ ++.|+ +-|+|--.|-|||+..+-.+....++++. +...+.+.-.|||||.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s--------------~~~e~~~~PSLIVCPs 1040 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRS--------------ESSEFNRLPSLIVCPS 1040 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcc--------------cchhhccCCeEEECCc
Confidence 4577899988765 33333 67999999999999876555555555432 1223444558999995
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHh
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~l 351 (465)
.|+--+..++.+++.. +++...+|+.......+.-.++.+|||+++..+++-+.. +.-...-|+|+||-|-|
T Consensus 1041 -TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1041 -TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred -hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----HHhcccceEEecCccee
Confidence 6889999999998764 566666676555444444445679999999998753321 11235568999999987
Q ss_pred hhcCCHHHHHHHHHhCC
Q 012337 352 IENGHFRELQSIIDMLP 368 (465)
Q Consensus 352 l~~~~~~~l~~i~~~l~ 368 (465)
-.. ...+....+.|.
T Consensus 1113 kN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1113 KNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--HHHHHHHHHHHh
Confidence 532 334444444443
No 154
>COG4889 Predicted helicase [General function prediction only]
Probab=98.08 E-value=1.7e-05 Score=85.15 Aligned_cols=139 Identities=22% Similarity=0.207 Sum_probs=87.7
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHhcCC---cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCC
Q 012337 184 LMKSIYRLGFKEPTPIQKACIPAAAHQGK---DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 260 (465)
Q Consensus 184 l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~---dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 260 (465)
+..++.-..-..|+|+|+.++..++.... .-=+.+..|+|||++.+- |.+.+-.
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~---------------------- 206 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA---------------------- 206 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----------------------
Confidence 33344334445899999999998864211 112234568999988643 4444422
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHH--------------------H-----HHHHHhCCCcE
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE--------------------K-----QERLLKARPEL 315 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~--------------------~-----~~~~~~~~~dI 315 (465)
.++|+|+|+..|..|..+++..- +...++...+++..... . ..+....+--|
T Consensus 207 --~~iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~v 283 (1518)
T COG4889 207 --ARILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTV 283 (1518)
T ss_pred --hheEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEE
Confidence 37999999999999988887653 23455555555443210 0 00111234579
Q ss_pred EEeChHHHHHHHhCCCccccccCceeEEEecchhHh
Q 012337 316 VVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351 (465)
Q Consensus 316 iV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~l 351 (465)
+++|...|..+-.. ...-+..+++||.||||+-
T Consensus 284 vFsTYQSl~~i~eA---Qe~G~~~fDliicDEAHRT 316 (1518)
T COG4889 284 VFSTYQSLPRIKEA---QEAGLDEFDLIICDEAHRT 316 (1518)
T ss_pred EEEcccchHHHHHH---HHcCCCCccEEEecchhcc
Confidence 99999888765532 1244788999999999984
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.07 E-value=8.6e-06 Score=89.86 Aligned_cols=130 Identities=20% Similarity=0.244 Sum_probs=94.1
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+++|.-.-- +|++|+ |+...||-|||++..+|+.-..+. |..|-||+..--|
T Consensus 169 ~~yDVQliGgi-vLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~-----------------------GkgVHvVTVNDYL 222 (1112)
T PRK12901 169 VHYDVQLIGGV-VLHQGK--IAEMATGEGKTLVATLPVYLNALT-----------------------GNGVHVVTVNDYL 222 (1112)
T ss_pred cccchHHhhhh-hhcCCc--eeeecCCCCchhHHHHHHHHHHHc-----------------------CCCcEEEEechhh
Confidence 57778866653 345554 789999999999999998765542 3458888889999
Q ss_pred HHHHHHHHHHHHccCCceEEEEec-CCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCC---CccccccCceeEEEecchh
Q 012337 275 ALQVTDHLKEVAKGINVRVVPIVG-GMSTEKQERLLKARPELVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLDEAD 349 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~v~~~~g-g~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~---~~~~~~l~~i~~lViDEah 349 (465)
|..=++.+..+...+|+.|+++.. +.+...... .-.|||..+|..-| .+.|... .......+.+.+.||||+|
T Consensus 223 A~RDaewmgply~fLGLsvg~i~~~~~~~~~rr~--aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 223 AKRDSEWMGPLYEFHGLSVDCIDKHQPNSEARRK--AYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred hhccHHHHHHHHHHhCCceeecCCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 999999999999999999998876 444443332 23589999998765 2233211 1111235678899999999
Q ss_pred Hhh
Q 012337 350 RMI 352 (465)
Q Consensus 350 ~ll 352 (465)
.+|
T Consensus 301 SIL 303 (1112)
T PRK12901 301 SVL 303 (1112)
T ss_pred hhh
Confidence 876
No 156
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.02 E-value=3.6e-05 Score=78.02 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=100.4
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 193 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
+..+.|+|.+.+..+|..|..+++.-..|-|||+.++. +...|+. ..| .|||||..
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla--IA~yyra---------------------Ewp-lliVcPAs 251 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA--IARYYRA---------------------EWP-LLIVCPAS 251 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH--HHHHHhh---------------------cCc-EEEEecHH
Confidence 34678999999999998899999999999999988653 2233322 122 78899964
Q ss_pred HHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhh
Q 012337 273 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 273 ~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll 352 (465)
+-..+.+.|..++... ..+.++.++.+.... +-...-|.|.+.+.|..+-.. ..-....+||+||.|.|-
T Consensus 252 -vrftWa~al~r~lps~-~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk 321 (689)
T KOG1000|consen 252 -VRFTWAKALNRFLPSI-HPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLK 321 (689)
T ss_pred -HhHHHHHHHHHhcccc-cceEEEecccCCccc---cccCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhh
Confidence 4466777777765422 235555555443211 112346899999887544321 222347899999999876
Q ss_pred hcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 353 ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 353 ~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
.+--.....++..+. .-..+|++|.|.+.
T Consensus 322 -~sktkr~Ka~~dllk------------------------~akhvILLSGTPav 350 (689)
T KOG1000|consen 322 -DSKTKRTKAATDLLK------------------------VAKHVILLSGTPAV 350 (689)
T ss_pred -ccchhhhhhhhhHHH------------------------HhhheEEecCCccc
Confidence 444444555555544 34567888888753
No 157
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.00 E-value=8.6e-05 Score=72.08 Aligned_cols=173 Identities=20% Similarity=0.226 Sum_probs=108.0
Q ss_pred ccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHh---------cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhh
Q 012337 176 NELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH---------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 246 (465)
Q Consensus 176 ~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~---------~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~ 246 (465)
-.+.|+..++.. | .++..|.+++-.+.. .+.-+++--.||.||--...--|++++++
T Consensus 24 y~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-------- 89 (303)
T PF13872_consen 24 YRLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-------- 89 (303)
T ss_pred cccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc--------
Confidence 455677765432 2 578999888866542 13357778899999987766667776653
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHH
Q 012337 247 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 326 (465)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~ 326 (465)
++.++|+|+.+-.|-....+.+..+... .+.+..+..- ... ....-.-.||++|+..|...
T Consensus 90 --------------Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~---~~~~~~~GvlF~TYs~L~~~ 150 (303)
T PF13872_consen 90 --------------GRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYG---DIIRLKEGVLFSTYSTLISE 150 (303)
T ss_pred --------------CCCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccC---cCCCCCCCccchhHHHHHhH
Confidence 3457999999999999999999988543 3333322211 000 00112346999999998776
Q ss_pred HhCCCccccccC---------ceeEEEecchhHhhhcCC--------HHHHHHHHHhCCCCCCCCCCCcccccchhcccc
Q 012337 327 MSGGEKHLVELH---------TLSFFVLDEADRMIENGH--------FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSS 389 (465)
Q Consensus 327 l~~~~~~~~~l~---------~i~~lViDEah~ll~~~~--------~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (465)
-..+......|. -=.+||+||||.+-.... ...+..+-+.||
T Consensus 151 ~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP--------------------- 209 (303)
T PF13872_consen 151 SQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP--------------------- 209 (303)
T ss_pred HhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC---------------------
Confidence 532211111111 123799999998764422 234455556665
Q ss_pred ccCCCceEEEEeeeccC
Q 012337 390 LQRKKRQTLVFSATIAL 406 (465)
Q Consensus 390 ~~~~~~q~i~~SATl~~ 406 (465)
.-++|.+|||-..
T Consensus 210 ----~ARvvY~SATgas 222 (303)
T PF13872_consen 210 ----NARVVYASATGAS 222 (303)
T ss_pred ----CCcEEEecccccC
Confidence 3458889999863
No 158
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.00 E-value=1.5e-05 Score=83.80 Aligned_cols=143 Identities=22% Similarity=0.193 Sum_probs=88.7
Q ss_pred CCcHHHHHHHHHHHhc----CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 195 EPTPIQKACIPAAAHQ----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~----~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.+-|+|..++.+++.. +.--|+....|-|||+..+-.++..=...+... +...... ..|||||
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~------------~~~~~a~-~TLII~P 391 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKARE------------KKGESAS-KTLIICP 391 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhc------------ccccccC-CeEEeCc
Confidence 5678999999777532 224677888999999875544443322111110 0011111 4899999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHH----HHhCCCccccccCcee--EEE
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE----LMSGGEKHLVELHTLS--FFV 344 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~----~l~~~~~~~~~l~~i~--~lV 344 (465)
- .|+.|+..++......-.++|+.++|.....-. ......+||+|+|+.-+.. -+.. ......|-.|. .||
T Consensus 392 a-Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~-~~~L~~YDvViTTY~lva~~~~~e~~~-~~~~spL~~I~W~RVI 468 (901)
T KOG4439|consen 392 A-SLIHQWEAEVARRLEQNALSVYLYHGPNKREIS-AKELRKYDVVITTYNLVANKPDDELEE-GKNSSPLARIAWSRVI 468 (901)
T ss_pred H-HHHHHHHHHHHHHHhhcceEEEEecCCccccCC-HHHHhhcceEEEeeeccccCCchhhhc-ccCccHHHHhhHHHhh
Confidence 5 577899999988777667888888887642222 2233468999999865543 1111 11112244554 499
Q ss_pred ecchhHhhh
Q 012337 345 LDEADRMIE 353 (465)
Q Consensus 345 iDEah~ll~ 353 (465)
+||||.+-+
T Consensus 469 LDEAH~IrN 477 (901)
T KOG4439|consen 469 LDEAHNIRN 477 (901)
T ss_pred hhhhhhhcc
Confidence 999998764
No 159
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.99 E-value=4.8e-05 Score=82.05 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=56.3
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhh--hhhhhhh------------hh--hhh
Q 012337 195 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA--GKMLEEK------------GE--EAE 255 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l---~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~--~~~~~~~------------~~--~~~ 255 (465)
.|++.|...+..++ ....+.++..|||+|||++.+-..|........+. +....+. ++ .+.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68899976665543 46778999999999999986555444332222110 0000000 00 011
Q ss_pred hc---CCCCCeEEEEEcccHHHHHHHHHHHHHHHc
Q 012337 256 KY---APKGHLRALIITPTRELALQVTDHLKEVAK 287 (465)
Q Consensus 256 ~~---~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~ 287 (465)
.. ...+.|++.|-.-|..-..|+.++++...-
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence 11 113478899998998878888888887643
No 160
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.98 E-value=1.6e-05 Score=82.70 Aligned_cols=66 Identities=23% Similarity=0.246 Sum_probs=52.2
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.+.+-|..++..++++..=.+++||+|+|||.+...-|.+.+.+ +-++||.+||...
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----------------------~k~VLVcaPSn~A 241 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----------------------KKRVLVCAPSNVA 241 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----------------------CCeEEEEcCchHH
Confidence 57889999998887544456889999999999877766666532 2489999999999
Q ss_pred HHHHHHHHH
Q 012337 275 ALQVTDHLK 283 (465)
Q Consensus 275 a~Qv~~~l~ 283 (465)
+.-+.+.+.
T Consensus 242 VdNiverl~ 250 (649)
T KOG1803|consen 242 VDNIVERLT 250 (649)
T ss_pred HHHHHHHhc
Confidence 888888654
No 161
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.98 E-value=5e-05 Score=70.35 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHHhcCC-cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 195 EPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~-dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
+|++-|..++..++.++. -++++|+.|+|||.+. -.+...+.. .+.++++++||..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~----------------------~g~~v~~~apT~~ 57 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA----------------------AGKRVIGLAPTNK 57 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH----------------------TT--EEEEESSHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh----------------------CCCeEEEECCcHH
Confidence 368899999999876554 4678899999999753 334443321 1357999999999
Q ss_pred HHHHHHHH
Q 012337 274 LALQVTDH 281 (465)
Q Consensus 274 La~Qv~~~ 281 (465)
.+..+.+.
T Consensus 58 Aa~~L~~~ 65 (196)
T PF13604_consen 58 AAKELREK 65 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88776655
No 162
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.88 E-value=3.3e-05 Score=71.58 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=84.9
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 194 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
...++-|..++..++ +..-+++.||.|||||+..+..+++.+... ..-+++|+-|+.+
T Consensus 3 ~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---------------------~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 3 KPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEG---------------------EYDKIIITRPPVE 60 (205)
T ss_dssp ---SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTT---------------------S-SEEEEEE-S--
T ss_pred cCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhC---------------------CCcEEEEEecCCC
Confidence 346789999998887 678899999999999999998888887531 2337888888775
Q ss_pred HHHHHH-------HHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEec
Q 012337 274 LALQVT-------DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 346 (465)
Q Consensus 274 La~Qv~-------~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViD 346 (465)
....+- +.+.-+...+--....+++.... ..+.....|-+.++.-++ ...+.+ .+||||
T Consensus 61 ~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~----~~~~~~~~Ie~~~~~~iR---------Grt~~~-~~iIvD 126 (205)
T PF02562_consen 61 AGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKL----EELIQNGKIEIEPLAFIR---------GRTFDN-AFIIVD 126 (205)
T ss_dssp TT----SS---------TTTHHHHHHHTTTS-TTCH----HHHHHTTSEEEEEGGGGT---------T--B-S-EEEEE-
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhH----HHHhhcCeEEEEehhhhc---------Cccccc-eEEEEe
Confidence 311110 00000000000000000011111 111123345555443321 133443 699999
Q ss_pred chhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhcccccccccC
Q 012337 347 EADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHGSLKLKQSVN 426 (465)
Q Consensus 347 Eah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~~~~~~~~~~ 426 (465)
||..+- ...+..++.++. ...++|++--.- ..+....
T Consensus 127 EaQN~t----~~~~k~ilTR~g------------------------~~skii~~GD~~--Q~D~~~~------------- 163 (205)
T PF02562_consen 127 EAQNLT----PEELKMILTRIG------------------------EGSKIIITGDPS--QIDLPLD------------- 163 (205)
T ss_dssp SGGG------HHHHHHHHTTB-------------------------TT-EEEEEE-------------------------
T ss_pred cccCCC----HHHHHHHHcccC------------------------CCcEEEEecCce--eecCCCC-------------
Confidence 999764 567788887776 456666654332 1111100
Q ss_pred ccccHHHHHHHhCccccceEEecCchHhHhhhhh
Q 012337 427 GLNSIETLSERAGMRANVAIVDLTNVSVLANKLE 460 (465)
Q Consensus 427 ~~~~~~~l~~~~~~~~~~~iidl~~~~~~~~~l~ 460 (465)
....+..+.+++.-.+.+.+|.++....++..|.
T Consensus 164 ~~nGl~~~~~~~~~~~~~~~i~l~~~d~vRs~l~ 197 (205)
T PF02562_consen 164 YNNGLTYAIERLKGEPGIGVIELTLEDIVRSPLA 197 (205)
T ss_dssp ----THHHHHHTTT-TTEEEEE--GGG----HHH
T ss_pred CCchHHHHHHHhcCCCceEEEEEeCCceECcHHH
Confidence 1133555666665566789999977555544443
No 163
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.82 E-value=0.00011 Score=76.95 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=63.7
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 012337 187 SIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 266 (465)
Q Consensus 187 ~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 266 (465)
.+...|+..+..-|..|+.++| +..=.|++||.|+|||.+-.--+++.+ +. +...+|
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~IVyhl~-~~---------------------~~~~VL 458 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSATIVYHLA-RQ---------------------HAGPVL 458 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHHHHHHHH-Hh---------------------cCCceE
Confidence 4445677889999999999997 677789999999999987544444333 21 233699
Q ss_pred EEcccHHHHHHHHHHHHHHHccCCceEEEEec
Q 012337 267 IITPTRELALQVTDHLKEVAKGINVRVVPIVG 298 (465)
Q Consensus 267 il~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~g 298 (465)
+++|+.-.+.|++..+.+. |++|+.+..
T Consensus 459 vcApSNiAVDqLaeKIh~t----gLKVvRl~a 486 (935)
T KOG1802|consen 459 VCAPSNIAVDQLAEKIHKT----GLKVVRLCA 486 (935)
T ss_pred EEcccchhHHHHHHHHHhc----CceEeeeeh
Confidence 9999999999998888664 566655443
No 164
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=97.74 E-value=0.00024 Score=79.10 Aligned_cols=142 Identities=16% Similarity=0.206 Sum_probs=92.5
Q ss_pred CCCcHHHHHHHHHHHh---cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 194 KEPTPIQKACIPAAAH---QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~---~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
..++.+|...+.++++ +++++|+.-..|-|||+.- +..|..++... ...|| .|||+|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~------------------~~~gp-flvvvp 428 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSL------------------QIHGP-FLVVVP 428 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhh------------------hccCC-eEEEee
Confidence 4789999988877654 5789999999999999763 22333333321 12344 678888
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hC-----CCcEEEeChHHHHHHHhCCCccccccCce-
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KA-----RPELVVGTPGRLWELMSGGEKHLVELHTL- 340 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~-----~~dIiV~TP~~L~~~l~~~~~~~~~l~~i- 340 (465)
..-+ .-+..+|..++ .+++++++|........+.. .. ..++|++|.+.++.- ...|++|
T Consensus 429 lst~-~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD-------k~~L~~i~ 497 (1373)
T KOG0384|consen 429 LSTI-TAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD-------KAELSKIP 497 (1373)
T ss_pred hhhh-HHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc-------HhhhccCC
Confidence 6554 45666666664 67888888887654433322 12 478999999887531 1335554
Q ss_pred -eEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 341 -SFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 341 -~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.+++|||||+|-. -...+...+..+.
T Consensus 498 w~~~~vDeahrLkN--~~~~l~~~l~~f~ 524 (1373)
T KOG0384|consen 498 WRYLLVDEAHRLKN--DESKLYESLNQFK 524 (1373)
T ss_pred cceeeecHHhhcCc--hHHHHHHHHHHhc
Confidence 5799999999862 2344555555554
No 165
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.69 E-value=0.00035 Score=76.04 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 194 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
..+.+.|..++..++.+...+++.||+|+|||.+..-.+.+.+ . .+.++|+++||..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~----------------------~g~~VLv~a~sn~ 212 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K----------------------RGLRVLVTAPSNI 212 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H----------------------cCCCEEEEcCcHH
Confidence 3679999999988875446789999999999976443333322 1 1347999999999
Q ss_pred HHHHHHHHHHHH
Q 012337 274 LALQVTDHLKEV 285 (465)
Q Consensus 274 La~Qv~~~l~~l 285 (465)
.+.++.+.+...
T Consensus 213 Avd~l~e~l~~~ 224 (637)
T TIGR00376 213 AVDNLLERLALC 224 (637)
T ss_pred HHHHHHHHHHhC
Confidence 999999888763
No 166
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.66 E-value=0.00012 Score=77.15 Aligned_cols=142 Identities=20% Similarity=0.249 Sum_probs=95.5
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l---~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.+-++|...+.++. .+|-|-|+.-..|-|||.. .+.+|.|+..++. --|| -|||+|.
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQ-sisvlAhLaE~~n------------------IwGP-FLVVtpa 626 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQ-SISVLAHLAETHN------------------IWGP-FLVVTPA 626 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHH-HHHHHHHHHHhcc------------------CCCc-eEEeehH
Confidence 56678888887654 3677899999999999976 4567778876642 1233 5888887
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH---------HhCCCcEEEeChHHHHHHHhCCCccccccCceeE
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---------LKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 342 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---------~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~ 342 (465)
.-| .-++++|..++. .++++.+.|+......-+. -..+.+|+|+|+..++. +.+.+.--...+
T Consensus 627 StL-~NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVt-----Deky~qkvKWQY 698 (1185)
T KOG0388|consen 627 STL-HNWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVT-----DEKYLQKVKWQY 698 (1185)
T ss_pred HHH-hHHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeec-----hHHHHHhhhhhh
Confidence 766 567777777753 6788888888775443332 12357999999876542 111122224568
Q ss_pred EEecchhHhhhcCCHHHHHHHHH
Q 012337 343 FVLDEADRMIENGHFRELQSIID 365 (465)
Q Consensus 343 lViDEah~ll~~~~~~~l~~i~~ 365 (465)
+|+|||..|- .+....+..++.
T Consensus 699 MILDEAQAIK-SSsS~RWKtLLs 720 (1185)
T KOG0388|consen 699 MILDEAQAIK-SSSSSRWKTLLS 720 (1185)
T ss_pred eehhHHHHhh-hhhhhHHHHHhh
Confidence 9999999987 444555555553
No 167
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.61 E-value=0.00021 Score=72.48 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=67.1
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCce
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 292 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~ 292 (465)
-++|.|..|||||+..+-.+.. +.. ...+..++++++...|...+...+.....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l~~--------------------~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-LQN--------------------SEEGKKVLYLCGNHPLRNKLREQLAKKYN----- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-hhc--------------------cccCCceEEEEecchHHHHHHHHHhhhcc-----
Confidence 4789999999999875433322 200 12345799999999999888888765420
Q ss_pred EEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcC-------CHHHHHHHHH
Q 012337 293 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG-------HFRELQSIID 365 (465)
Q Consensus 293 v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~-------~~~~l~~i~~ 365 (465)
.......|..|..+...+. ........+.+|||||||+|...+ ....|..|+.
T Consensus 57 -----------------~~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~ 116 (352)
T PF09848_consen 57 -----------------PKLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIK 116 (352)
T ss_pred -----------------cchhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHh
Confidence 0011234445555544332 111345788999999999998732 2355666654
Q ss_pred h
Q 012337 366 M 366 (465)
Q Consensus 366 ~ 366 (465)
.
T Consensus 117 ~ 117 (352)
T PF09848_consen 117 R 117 (352)
T ss_pred c
Confidence 4
No 168
>PRK10536 hypothetical protein; Provisional
Probab=97.61 E-value=0.0017 Score=62.16 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=36.7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHH
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLL 237 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~ 237 (465)
.++...+..|...+..+. +...+++.|++|+|||+..+..+++.++
T Consensus 55 ~~i~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l~ 100 (262)
T PRK10536 55 SPILARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEALI 100 (262)
T ss_pred ccccCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 455567888988887664 6778899999999999998877776664
No 169
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.59 E-value=0.00043 Score=75.21 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=88.4
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCc
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 291 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~ 291 (465)
.-.++.+|.|||||.+..-++-..+. ...-++|+|+-.+.|+.++...+....- .++
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~----------------------~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gF 106 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK----------------------NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGF 106 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc----------------------CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccc
Confidence 34688999999999876555443321 2234799999999999999999876421 133
Q ss_pred eEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCH-------HHHHHHH
Q 012337 292 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHF-------RELQSII 364 (465)
Q Consensus 292 ~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~-------~~l~~i~ 364 (465)
....-.++..... ...+-+++....|.++-. ..+.++++|||||+-.++.. ++ ..+..++
T Consensus 107 v~Y~d~~~~~i~~------~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L 173 (824)
T PF02399_consen 107 VNYLDSDDYIIDG------RPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLL 173 (824)
T ss_pred eeeeccccccccc------cccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHH
Confidence 2221111111100 124566777777766542 34678999999999988743 32 2222222
Q ss_pred HhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc-HHHHHHhh
Q 012337 365 DMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS-ADFRKKLK 415 (465)
Q Consensus 365 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~-~~~~~~l~ 415 (465)
..+- +....+|++-||+... .+|+..+.
T Consensus 174 ~~lI-----------------------~~ak~VI~~DA~ln~~tvdFl~~~R 202 (824)
T PF02399_consen 174 KELI-----------------------RNAKTVIVMDADLNDQTVDFLASCR 202 (824)
T ss_pred HHHH-----------------------HhCCeEEEecCCCCHHHHHHHHHhC
Confidence 2221 1445788999999753 47777653
No 170
>PF13245 AAA_19: Part of AAA domain
Probab=97.56 E-value=0.00044 Score=53.67 Aligned_cols=61 Identities=26% Similarity=0.357 Sum_probs=39.9
Q ss_pred HHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHH
Q 012337 203 CIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 282 (465)
Q Consensus 203 ~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l 282 (465)
++..++.+..-+++.||.|||||...+--+...+ ..+ ... +.++||++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~-~~~-----------------~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELL-AAR-----------------ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHH-HHh-----------------cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443444234455699999999966544444333 211 112 457999999999999998888
No 171
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.54 E-value=0.0013 Score=70.77 Aligned_cols=135 Identities=21% Similarity=0.311 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHH
Q 012337 197 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~ 276 (465)
.+.|+.++-.++ ..+-+++.|+.|+|||.+.. .++..+.... .....+++++.+||-..|.
T Consensus 147 ~~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~-----------------~~~~~~~I~l~APTGkAA~ 207 (586)
T TIGR01447 147 QNWQKVAVALAL-KSNFSLITGGPGTGKTTTVA-RLLLALVKQS-----------------PKQGKLRIALAAPTGKAAA 207 (586)
T ss_pred cHHHHHHHHHHh-hCCeEEEEcCCCCCHHHHHH-HHHHHHHHhc-----------------cccCCCcEEEECCcHHHHH
Confidence 378999998887 57889999999999997632 2222222110 0111357999999999998
Q ss_pred HHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcc---ccccCceeEEEecchhHhhh
Q 012337 277 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH---LVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 277 Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~---~~~l~~i~~lViDEah~ll~ 353 (465)
++.+.+......+... . .+.....+-..|-.+|+......... ....-.+++||||||= |+
T Consensus 208 rL~e~~~~~~~~l~~~---------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mv- 271 (586)
T TIGR01447 208 RLAESLRKAVKNLAAA---------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MV- 271 (586)
T ss_pred HHHHHHHhhhcccccc---------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cC-
Confidence 8887776543222110 0 00001112234444443322110000 0112357899999997 33
Q ss_pred cCCHHHHHHHHHhCC
Q 012337 354 NGHFRELQSIIDMLP 368 (465)
Q Consensus 354 ~~~~~~l~~i~~~l~ 368 (465)
-...+..++..++
T Consensus 272 --d~~l~~~ll~al~ 284 (586)
T TIGR01447 272 --DLPLMAKLLKALP 284 (586)
T ss_pred --CHHHHHHHHHhcC
Confidence 2445666777776
No 172
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.53 E-value=0.0012 Score=71.34 Aligned_cols=134 Identities=24% Similarity=0.319 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHH
Q 012337 197 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~ 276 (465)
.++|+.++-.++ ..+-+++.|++|+|||.+..- ++..+.+. ......++++++||...|.
T Consensus 154 ~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~-ll~~l~~~------------------~~~~~~~i~l~APTgkAA~ 213 (615)
T PRK10875 154 VDWQKVAAAVAL-TRRISVISGGPGTGKTTTVAK-LLAALIQL------------------ADGERCRIRLAAPTGKAAA 213 (615)
T ss_pred CHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHH-HHHHHHHh------------------cCCCCcEEEEECCcHHHHH
Confidence 589999997776 577899999999999976322 22222211 0112357999999999999
Q ss_pred HHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc---cccccCceeEEEecchhHhhh
Q 012337 277 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK---HLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 277 Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~---~~~~l~~i~~lViDEah~ll~ 353 (465)
++.+.+.......++. . . +......-..|-.+|+........ .....-.+++||||||- |+
T Consensus 214 rL~e~~~~~~~~~~~~---------~--~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS-Mv- 277 (615)
T PRK10875 214 RLTESLGKALRQLPLT---------D--E---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-MV- 277 (615)
T ss_pred HHHHHHHhhhhccccc---------h--h---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh-cc-
Confidence 9988876544322211 0 0 000001112333333322111100 01122346899999997 33
Q ss_pred cCCHHHHHHHHHhCC
Q 012337 354 NGHFRELQSIIDMLP 368 (465)
Q Consensus 354 ~~~~~~l~~i~~~l~ 368 (465)
-...+..++..++
T Consensus 278 --d~~lm~~ll~al~ 290 (615)
T PRK10875 278 --DLPMMARLIDALP 290 (615)
T ss_pred --cHHHHHHHHHhcc
Confidence 3556667777776
No 173
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.52 E-value=0.0014 Score=61.49 Aligned_cols=154 Identities=22% Similarity=0.323 Sum_probs=91.3
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHh--cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 175 WNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAH--QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 175 ~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~--~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
|.-..-+.+++-.+ ..++ -+++.|.++...++. .|.|.+.+.-+|.|||.+ ++|++..++..
T Consensus 5 w~p~~~P~wLl~E~-e~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------------- 68 (229)
T PF12340_consen 5 WDPMEYPDWLLFEI-ESNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------------- 68 (229)
T ss_pred CCchhChHHHHHHH-HcCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC-------------
Confidence 44333344443332 2344 689999999988874 367999999999999955 77877776532
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEe--cCCCH--HH--HHH----HHhCCCcEEEeChH
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIV--GGMST--EK--QER----LLKARPELVVGTPG 321 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~--gg~~~--~~--~~~----~~~~~~dIiV~TP~ 321 (465)
+..-|.+++| ++|..|..+.+.....++ +-++..+. -.... .. ... .....-.|+++||+
T Consensus 69 --------g~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PE 139 (229)
T PF12340_consen 69 --------GSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPE 139 (229)
T ss_pred --------CCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChH
Confidence 1224556666 679999999887765432 33333322 22211 11 111 11234469999999
Q ss_pred HHHHHHhC-------CCcc----c----cccCceeEEEecchhHhhh
Q 012337 322 RLWELMSG-------GEKH----L----VELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 322 ~L~~~l~~-------~~~~----~----~~l~~i~~lViDEah~ll~ 353 (465)
.+..+.-. +... . ..|.....-|+||+|.++.
T Consensus 140 hilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 140 HILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 88653311 1100 0 1134455679999999875
No 174
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.44 E-value=0.0014 Score=55.99 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=13.3
Q ss_pred cCCcEEEEcCCCCChhHHhhH
Q 012337 210 QGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~l 230 (465)
++..+++.|++|+|||.+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHH
Confidence 456789999999999976433
No 175
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.42 E-value=0.0018 Score=71.53 Aligned_cols=67 Identities=27% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.++ .+++-|..++..++ +.+-+++.|+.|+|||.+. -.++..+... .....+++++|
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~l-~~i~~~~~~~--------------------~~~~~v~l~Ap 376 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAI-QHKVVILTGGPGTGKTTIT-RAIIELAEEL--------------------GGLLPVGLAAP 376 (720)
T ss_pred cCC-CCCHHHHHHHHHHH-hCCeEEEECCCCCCHHHHH-HHHHHHHHHc--------------------CCCceEEEEeC
Confidence 454 79999999998886 5778999999999999653 2233332110 01146888999
Q ss_pred cHHHHHHHHH
Q 012337 271 TRELALQVTD 280 (465)
Q Consensus 271 tr~La~Qv~~ 280 (465)
|-..|.++.+
T Consensus 377 Tg~AA~~L~e 386 (720)
T TIGR01448 377 TGRAAKRLGE 386 (720)
T ss_pred chHHHHHHHH
Confidence 9988876544
No 176
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.40 E-value=0.00041 Score=66.25 Aligned_cols=87 Identities=31% Similarity=0.473 Sum_probs=64.1
Q ss_pred CCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCC-CHHHHHHHHh-CCCcEEEeChHHHHHHHhCCCccccc
Q 012337 259 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGM-STEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 259 ~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~-~~~~~~~~~~-~~~dIiV~TP~~L~~~l~~~~~~~~~ 336 (465)
..+.|.+|||+..---|..+.+.+..+- .-+..|+-++.-. ...++...+. ..++|.||||+||..++..+ .+.
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~---~L~ 198 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENG---ALS 198 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcC---CCC
Confidence 4567899999997666777777776652 1123444445443 6667777776 47899999999999999765 477
Q ss_pred cCceeEEEecchh
Q 012337 337 LHTLSFFVLDEAD 349 (465)
Q Consensus 337 l~~i~~lViDEah 349 (465)
++++.+||||=-|
T Consensus 199 l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 199 LSNLKRIVLDWSY 211 (252)
T ss_pred cccCeEEEEcCCc
Confidence 8999999999754
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.34 E-value=0.00093 Score=72.21 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHH-------HHHH-
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV-------TDHL- 282 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv-------~~~l- 282 (465)
.-++=|.+.||+|||+||+-.|++.-. ..+-.+-||+|||.+.-.-+ .++|
T Consensus 74 ~lNiDI~METGTGKTy~YlrtmfeLhk---------------------~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~ 132 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMFELHK---------------------KYGLFKFIIVVPSLAIKEGVFLTSKETTEHFF 132 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHHHHHH---------------------HhCceeEEEEeccHHHHhhhHHHHHHHHHHHh
Confidence 346778899999999999876655321 12345789999998853332 2333
Q ss_pred HHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHH------HHhC-----CC-----cccc-ccCce-eEEE
Q 012337 283 KEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE------LMSG-----GE-----KHLV-ELHTL-SFFV 344 (465)
Q Consensus 283 ~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~------~l~~-----~~-----~~~~-~l~~i-~~lV 344 (465)
......+.+..+.+ ............+.+.|++.|-..+.. +|.+ .. .... .+..+ -+||
T Consensus 133 k~~Yent~~e~~i~--~~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvI 210 (985)
T COG3587 133 KSEYENTRLESYIY--DEDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVI 210 (985)
T ss_pred hhhccCcceeEEee--chHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEE
Confidence 22222233333322 222222333334567888887655422 1111 11 0001 12223 3689
Q ss_pred ecchhHhhh
Q 012337 345 LDEADRMIE 353 (465)
Q Consensus 345 iDEah~ll~ 353 (465)
|||-|+|..
T Consensus 211 vDEPh~f~~ 219 (985)
T COG3587 211 VDEPHRFLG 219 (985)
T ss_pred ecChhhccc
Confidence 999999974
No 178
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.29 E-value=9e-05 Score=76.26 Aligned_cols=188 Identities=9% Similarity=-0.087 Sum_probs=123.4
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc
Q 012337 190 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 269 (465)
Q Consensus 190 ~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 269 (465)
.+.......+|..++..+ ++|+++++.-.|.+||.++|.+.....++.-. ..-.+++.
T Consensus 281 ~~~~E~~~~~~~~~~~~~-~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~---------------------~s~~~~~~ 338 (1034)
T KOG4150|consen 281 KNTGESGIAISLELLKFA-SEGRADGGNEARQAGKGTCPTSGSRKFQTLCH---------------------ATNSLLPS 338 (1034)
T ss_pred cccccchhhhhHHHHhhh-hhcccccccchhhcCCccCcccchhhhhhcCc---------------------ccceecch
Confidence 344456778999999877 68999999999999999999998877665322 12368888
Q ss_pred ccHHHHHHHHHHHHHHHcc---CCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHH-hCCCccccccCceeEEEe
Q 012337 270 PTRELALQVTDHLKEVAKG---INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM-SGGEKHLVELHTLSFFVL 345 (465)
Q Consensus 270 Ptr~La~Qv~~~l~~l~~~---~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l-~~~~~~~~~l~~i~~lVi 345 (465)
||.+++....+.+.-+... ..--++.++.+.+........+.+..+|++.|..+...+ .+.--+...+-...++++
T Consensus 339 ~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~ 418 (1034)
T KOG4150|consen 339 EMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDT 418 (1034)
T ss_pred hHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcc
Confidence 9998887654332211111 112344556666655566666778999999999886544 322222233445668899
Q ss_pred cchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhh
Q 012337 346 DEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 415 (465)
Q Consensus 346 DEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 415 (465)
||+|..+ .-+..++...+..|... ..|++-+ -..|++-.|||+.....+++.+.
T Consensus 419 ~~~~~Y~-~~~~~~~~~~~R~L~~L-----------~~~F~~~----~~~~~~~~~~~~K~~~~~~~~~~ 472 (1034)
T KOG4150|consen 419 NSCALYL-FPTKALAQDQLRALSDL-----------IKGFEAS----INMGVYDGDTPYKDRTRLRSELA 472 (1034)
T ss_pred cceeeee-cchhhHHHHHHHHHHHH-----------HHHHHhh----cCcceEeCCCCcCCHHHHHHHhc
Confidence 9999765 44555555555444311 0122222 46899999999988888877764
No 179
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.23 E-value=0.0021 Score=63.35 Aligned_cols=104 Identities=21% Similarity=0.184 Sum_probs=65.6
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHH
Q 012337 196 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 275 (465)
Q Consensus 196 p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La 275 (465)
+++-|.+++.. ....++|.|..|||||.+.+.-++..+... +....++|+|++|+..|
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~-------------------~~~~~~Il~lTft~~aa 58 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEG-------------------GVPPERILVLTFTNAAA 58 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTS-------------------SSTGGGEEEEESSHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccc-------------------cCChHHheecccCHHHH
Confidence 57889888855 367899999999999988655555444321 13345799999999999
Q ss_pred HHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHH
Q 012337 276 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 327 (465)
Q Consensus 276 ~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l 327 (465)
..+...+...+...... ................+-|+|-..+..-+
T Consensus 59 ~e~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~l 104 (315)
T PF00580_consen 59 QEMRERIRELLEEEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRL 104 (315)
T ss_dssp HHHHHHHHHHHHHCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHH
T ss_pred HHHHHHHHHhcCccccc------ccccccccccccccchheeehhhhhhhhh
Confidence 99999998875432110 00000111222234568888888775533
No 180
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.19 E-value=0.0014 Score=71.72 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 012337 178 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 257 (465)
Q Consensus 178 l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 257 (465)
..+.|.+... -+..+..-|++|+-.++....-.++.|-+|+|||.+-+.. +..++.
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~------------------- 711 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVA------------------- 711 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHH-------------------
Confidence 3445554442 1336778999999888866666889999999999764432 222221
Q ss_pred CCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHH-----------------HHHHHHhCCCcEEEeCh
Q 012337 258 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE-----------------KQERLLKARPELVVGTP 320 (465)
Q Consensus 258 ~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~-----------------~~~~~~~~~~dIiV~TP 320 (465)
.+.+||..+-|...+.-+.-.+..+ ++.+..+-.+.... .....+.+.+.|+.||-
T Consensus 712 ---~gkkVLLtsyThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TC 784 (1100)
T KOG1805|consen 712 ---LGKKVLLTSYTHSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTC 784 (1100)
T ss_pred ---cCCeEEEEehhhHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEc
Confidence 2447999999988766555444432 33322211111111 11223445688999998
Q ss_pred HHHHHHHhCCCccccccCceeEEEecchhHhh
Q 012337 321 GRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 321 ~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll 352 (465)
.++.+.| +..+.+++.|||||-.|+
T Consensus 785 lgi~~pl-------f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 785 LGINHPL-------FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred cCCCchh-------hhccccCEEEEccccccc
Confidence 8876655 445678999999999865
No 181
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.11 E-value=0.001 Score=67.71 Aligned_cols=124 Identities=10% Similarity=0.179 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHHH-----hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 196 PTPIQKACIPAAA-----HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 196 p~~iQ~~~i~~~l-----~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
|++-|+.++..++ ..+..+++.|+-|+|||+.+ -.+.+.++. .+..+++++|
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~---------------------~~~~~~~~a~ 58 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDYLRS---------------------RGKKVLVTAP 58 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHHhcc---------------------ccceEEEecc
Confidence 5677888876662 36778999999999998653 233222211 2347999999
Q ss_pred cHHHHHHH--HHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecch
Q 012337 271 TRELALQV--TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 271 tr~La~Qv--~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEa 348 (465)
|--.|..+ -..+..++ ++.+. .. .... +.+.+. ......+..+.+|||||+
T Consensus 59 tg~AA~~i~~G~T~hs~f---~i~~~----~~-----------~~~~--~~~~~~-------~~~~~~l~~~~~lIiDEi 111 (364)
T PF05970_consen 59 TGIAAFNIPGGRTIHSFF---GIPIN----NN-----------EKSQ--CKISKN-------SRLRERLRKADVLIIDEI 111 (364)
T ss_pred hHHHHHhccCCcchHHhc---Ccccc----cc-----------cccc--cccccc-------chhhhhhhhheeeecccc
Confidence 99877665 22222221 11110 00 0000 011111 111234788999999999
Q ss_pred hHhhhcCCHHHHHHHHHhCCCC
Q 012337 349 DRMIENGHFRELQSIIDMLPMT 370 (465)
Q Consensus 349 h~ll~~~~~~~l~~i~~~l~~~ 370 (465)
=.+. ...+..|..++..+...
T Consensus 112 sm~~-~~~l~~i~~~lr~i~~~ 132 (364)
T PF05970_consen 112 SMVS-ADMLDAIDRRLRDIRKS 132 (364)
T ss_pred cchh-HHHHHHHHHhhhhhhcc
Confidence 8543 66677777777766644
No 182
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.07 E-value=0.002 Score=70.44 Aligned_cols=133 Identities=23% Similarity=0.278 Sum_probs=97.0
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+ .|..+|.-..-.+ ...-++...||-|||++..+|+.-..+ .+-.|.+++.
T Consensus 77 lg~-~~~dVQliG~i~l---h~g~iaEM~TGEGKTL~atlp~ylnaL-----------------------~gkgVhvVTv 129 (822)
T COG0653 77 LGM-RHFDVQLLGGIVL---HLGDIAEMRTGEGKTLVATLPAYLNAL-----------------------AGKGVHVVTV 129 (822)
T ss_pred cCC-ChhhHHHhhhhhh---cCCceeeeecCCchHHHHHHHHHHHhc-----------------------CCCCcEEeee
Confidence 455 5666776555332 345578999999999999999864433 2346889999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCC---CccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGG---EKHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~---~~~~~~l~~i~~lViD 346 (465)
.--||..-...+..+...+|+.++++..+++......... |||..+|-..| .+.+... ...-..+..+.+.|+|
T Consensus 130 NdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvD 207 (822)
T COG0653 130 NDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVD 207 (822)
T ss_pred hHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEc
Confidence 9999999999999999999999999999998766655544 89999998776 2222110 0111235578899999
Q ss_pred chhHhh
Q 012337 347 EADRMI 352 (465)
Q Consensus 347 Eah~ll 352 (465)
|+|.|+
T Consensus 208 EvDSIL 213 (822)
T COG0653 208 EVDSIL 213 (822)
T ss_pred chhhee
Confidence 999865
No 183
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.03 E-value=0.0012 Score=71.42 Aligned_cols=113 Identities=19% Similarity=0.358 Sum_probs=73.7
Q ss_pred HhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH-H
Q 012337 208 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV-A 286 (465)
Q Consensus 208 l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l-~ 286 (465)
.....-+++-+.||+|||..+..-||+.++... ......+.+--|+|..+.-+++.+..- +
T Consensus 390 v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns------------------~g~~~na~v~qprrisaisiaerva~er~ 451 (1282)
T KOG0921|consen 390 VAENRVVIIKGETGCGKSTQVAQFLLESFLENS------------------NGASFNAVVSQPRRISAISLAERVANERG 451 (1282)
T ss_pred HhcCceeeEeecccccchhHHHHHHHHHHhhcc------------------ccccccceeccccccchHHHHHHHHHhhH
Confidence 334555788899999999999999999987542 223345777778887776666655432 1
Q ss_pred ccCCceEEEEecCCCHHHHHHH-HhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH
Q 012337 287 KGINVRVVPIVGGMSTEKQERL-LKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 350 (465)
Q Consensus 287 ~~~~~~v~~~~gg~~~~~~~~~-~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ 350 (465)
...+-.| | ... ++... ....-.|++||-+.|++++.++ +..+.++|+||.|.
T Consensus 452 e~~g~tv----g-y~v-Rf~Sa~prpyg~i~fctvgvllr~~e~g------lrg~sh~i~deihe 504 (1282)
T KOG0921|consen 452 EEVGETC----G-YNV-RFDSATPRPYGSIMFCTVGVLLRMMENG------LRGISHVIIDEIHE 504 (1282)
T ss_pred Hhhcccc----c-ccc-cccccccccccceeeeccchhhhhhhhc------ccccccccchhhhh
Confidence 1111111 1 111 11111 1122369999999999999765 67888999999995
No 184
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.008 Score=61.38 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHhhH
Q 012337 211 GKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~l 230 (465)
...+++.||||+|||.+..-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999987543
No 185
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.98 E-value=0.012 Score=66.86 Aligned_cols=65 Identities=11% Similarity=-0.043 Sum_probs=46.0
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+ .+++-|.+++..++....-+++.|..|+|||.+ +-.++..+ +. .+.++++++|
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e~---------------------~G~~V~~~Ap 398 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-EA---------------------AGYEVRGAAL 398 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-HH---------------------cCCeEEEecC
Confidence 455 699999999998874334578999999999976 33333332 21 2457999999
Q ss_pred cHHHHHHHH
Q 012337 271 TRELALQVT 279 (465)
Q Consensus 271 tr~La~Qv~ 279 (465)
|--.|..+.
T Consensus 399 TGkAA~~L~ 407 (988)
T PRK13889 399 SGIAAENLE 407 (988)
T ss_pred cHHHHHHHh
Confidence 988775543
No 186
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.90 E-value=0.018 Score=64.07 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=49.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCC
Q 012337 181 HPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 260 (465)
Q Consensus 181 ~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 260 (465)
++..+......++ .+++-|..++..++...+-+++.|+.|+|||.+.- .++. ++..
T Consensus 339 ~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~-~~~~--------------------- 394 (744)
T TIGR02768 339 SPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AARE-AWEA--------------------- 394 (744)
T ss_pred CHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHH-HHHh---------------------
Confidence 3333333333344 68999999998887545668999999999996532 2222 2221
Q ss_pred CCeEEEEEcccHHHHHHHH
Q 012337 261 GHLRALIITPTRELALQVT 279 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~ 279 (465)
.+.++++++||--.|..+.
T Consensus 395 ~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 395 AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCeEEEEeCcHHHHHHHH
Confidence 1457999999988776554
No 187
>PRK08181 transposase; Validated
Probab=96.89 E-value=0.0063 Score=59.14 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=18.8
Q ss_pred HhcCCcEEEEcCCCCChhHHhhH
Q 012337 208 AHQGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 208 l~~~~dvl~~a~TGsGKT~~~~l 230 (465)
+..+++++++||+|+|||.....
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAA 125 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHH
Confidence 45788999999999999965443
No 188
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.84 E-value=0.021 Score=62.57 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=70.2
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC---
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI--- 289 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~--- 289 (465)
-.|+.--.|-|||+..+-.+-..++..+ .+--+||||+|..- +.-|.++|.++...+
T Consensus 698 GcILAHcMGLGKTlQVvtflhTvL~c~k-------------------lg~ktaLvV~PlNt-~~NW~~EFekWm~~~e~~ 757 (1567)
T KOG1015|consen 698 GCILAHCMGLGKTLQVVTFLHTVLLCDK-------------------LGFKTALVVCPLNT-ALNWMNEFEKWMEGLEDD 757 (1567)
T ss_pred chHHHHhhcccceehhhHHHHHHHHhhc-------------------cCCceEEEEcchHH-HHHHHHHHHHhccccccc
Confidence 3455555688999975444433343322 22347999999654 577888998887642
Q ss_pred -CceEEEEecCCCHHHHHHH---HhCCCcEEEeChHHHHHHHhCCCccccc----------cCceeEEEecchhHhhhcC
Q 012337 290 -NVRVVPIVGGMSTEKQERL---LKARPELVVGTPGRLWELMSGGEKHLVE----------LHTLSFFVLDEADRMIENG 355 (465)
Q Consensus 290 -~~~v~~~~gg~~~~~~~~~---~~~~~dIiV~TP~~L~~~l~~~~~~~~~----------l~~i~~lViDEah~ll~~~ 355 (465)
.+.|..+-.-......... |...-.|.|.-+..++.+-.....+... -..-++||.||+|.|-.
T Consensus 758 ~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKN-- 835 (1567)
T KOG1015|consen 758 EKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKN-- 835 (1567)
T ss_pred ccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhcc--
Confidence 2344333222222222222 2233356666666654433221111111 13457999999997642
Q ss_pred CHHHHHHHHHhC
Q 012337 356 HFRELQSIIDML 367 (465)
Q Consensus 356 ~~~~l~~i~~~l 367 (465)
--..+-..+..+
T Consensus 836 eksa~Skam~~i 847 (1567)
T KOG1015|consen 836 EKSAVSKAMNSI 847 (1567)
T ss_pred chHHHHHHHHHH
Confidence 233444444444
No 189
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0063 Score=61.72 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=20.0
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQR 235 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~ 235 (465)
.+..+++.||||+|||......+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999998865544433
No 190
>PRK06526 transposase; Provisional
Probab=96.67 E-value=0.0039 Score=60.14 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=19.4
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpi 232 (465)
..+.+++++||+|+|||......+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~ 119 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLG 119 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHH
Confidence 468899999999999997655433
No 191
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.0034 Score=65.53 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=29.7
Q ss_pred hCCCcEEEeChHHHHHHHhCCCccc---cccCceeEE-EecchhHhh
Q 012337 310 KARPELVVGTPGRLWELMSGGEKHL---VELHTLSFF-VLDEADRMI 352 (465)
Q Consensus 310 ~~~~dIiV~TP~~L~~~l~~~~~~~---~~l~~i~~l-ViDEah~ll 352 (465)
.....|.++|..+|...+.+..... .+|....+| +-||||+|-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 3467899999999988776543222 235555555 559999986
No 192
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.63 E-value=0.015 Score=65.86 Aligned_cols=138 Identities=25% Similarity=0.216 Sum_probs=87.1
Q ss_pred CCCcHHHHHHHHHHH---h-cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc
Q 012337 194 KEPTPIQKACIPAAA---H-QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 269 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l---~-~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 269 (465)
..+.++|...+..+. . .+.+.+++...|-|||+..+..+.. ++... ....+.+||++
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~------------------~~~~~~~liv~ 397 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESI------------------KVYLGPALIVV 397 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhcc------------------cCCCCCeEEEe
Confidence 467888998887643 1 3567788899999999886555444 22110 11135699999
Q ss_pred ccHHHHHHHHHHHHHHHccCCceEEEEecCCC-----HHHHHHHHhCC----CcEEEeChHHHHHHHhCCCccccccCce
Q 012337 270 PTRELALQVTDHLKEVAKGINVRVVPIVGGMS-----TEKQERLLKAR----PELVVGTPGRLWELMSGGEKHLVELHTL 340 (465)
Q Consensus 270 Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~-----~~~~~~~~~~~----~dIiV~TP~~L~~~l~~~~~~~~~l~~i 340 (465)
|+- ++.++.+++.++...... +...+|... .......+... .+|+++|.+.|..... ......-...
T Consensus 398 p~s-~~~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~--~~~~l~~~~~ 473 (866)
T COG0553 398 PAS-LLSNWKREFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLV--DHGGLKKIEW 473 (866)
T ss_pred cHH-HHHHHHHHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhh--hHHHHhhcee
Confidence 965 567888888777653332 556666554 22222222222 7899999999987431 1111233456
Q ss_pred eEEEecchhHhhhc
Q 012337 341 SFFVLDEADRMIEN 354 (465)
Q Consensus 341 ~~lViDEah~ll~~ 354 (465)
.++|+||||.|-..
T Consensus 474 ~~~v~DEa~~ikn~ 487 (866)
T COG0553 474 DRVVLDEAHRIKND 487 (866)
T ss_pred eeeehhhHHHHhhh
Confidence 78999999997644
No 193
>PRK04296 thymidine kinase; Provisional
Probab=96.63 E-value=0.0036 Score=57.64 Aligned_cols=21 Identities=19% Similarity=-0.015 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCChhHHhhHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lp 231 (465)
|.=+++.|++|+|||...+-.
T Consensus 2 g~i~litG~~GsGKTT~~l~~ 22 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQR 22 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHH
Confidence 344688999999999664433
No 194
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.59 E-value=0.046 Score=62.57 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 012337 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 259 (465)
Q Consensus 180 l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (465)
+++..+......++ .+++-|..++..+...++-+++.|+.|+|||.+.- .+...+ ..
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~-e~-------------------- 423 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAW-EA-------------------- 423 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHH-HH--------------------
Confidence 44555544444444 79999999998876445668999999999996633 233322 11
Q ss_pred CCCeEEEEEcccHHHHHHHH
Q 012337 260 KGHLRALIITPTRELALQVT 279 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~ 279 (465)
.+.+++.++||-..|..+.
T Consensus 424 -~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 424 -AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred -cCCeEEEEcCcHHHHHHHH
Confidence 2457999999988776554
No 195
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=96.55 E-value=0.0028 Score=69.68 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=80.3
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l---~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.+.++|...+.+++ +|.-+-|..-.+|-|||..- +.++-+++... ...|| -|||||+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K------------------~~~GP-~LvivPl 453 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHK------------------QMQGP-FLIIVPL 453 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHc------------------ccCCC-eEEeccc
Confidence 78899999987764 23447788999999999764 34455555442 22344 5888999
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHH--HHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCce--eEEEecc
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTE--KQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTL--SFFVLDE 347 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~--~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i--~~lViDE 347 (465)
-.|.. +..+|..++. .+..+...|..... -+......+.+|+++|.+.+.. + ...|+.| .++||||
T Consensus 454 stL~N-W~~Ef~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik-----d--k~lLsKI~W~yMIIDE 523 (1157)
T KOG0386|consen 454 STLVN-WSSEFPKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK-----D--KALLSKISWKYMIIDE 523 (1157)
T ss_pred cccCC-chhhcccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC-----C--HHHHhccCCcceeecc
Confidence 88864 5566655532 34443333332211 1112223578999999987643 1 1234444 5699999
Q ss_pred hhHhh
Q 012337 348 ADRMI 352 (465)
Q Consensus 348 ah~ll 352 (465)
.|+|-
T Consensus 524 GHRmK 528 (1157)
T KOG0386|consen 524 GHRMK 528 (1157)
T ss_pred ccccc
Confidence 99985
No 196
>PRK06893 DNA replication initiation factor; Validated
Probab=96.51 E-value=0.016 Score=55.07 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=19.7
Q ss_pred cCceeEEEecchhHhhhcCCH-HHHHHHHHhC
Q 012337 337 LHTLSFFVLDEADRMIENGHF-RELQSIIDML 367 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~-~~l~~i~~~l 367 (465)
+.++.+|||||+|.+.....| ..+..+++.+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~ 120 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRI 120 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHH
Confidence 346789999999988633333 2455555544
No 197
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.48 E-value=0.06 Score=47.10 Aligned_cols=19 Identities=37% Similarity=0.193 Sum_probs=14.7
Q ss_pred EEEEcCCCCChhHHhhHHH
Q 012337 214 IIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~lpi 232 (465)
+++.|++|+|||......+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~ 20 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLA 20 (165)
T ss_pred eeEeCCCCCCHHHHHHHHH
Confidence 6789999999997654433
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.45 E-value=0.058 Score=53.71 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=37.5
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCc-EEEEcCCCCChhHHhhHHHHHHHHHHH
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKD-IIGAAETGSGKTLAFGLPIMQRLLEER 240 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~d-vl~~a~TGsGKT~~~~lpil~~l~~~~ 240 (465)
.|+....-.|..++..++...-+ |.+.++.|||||+.++...+...+..+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~ 274 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK 274 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh
Confidence 57766677888888877643333 567789999999998888888876553
No 199
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.40 E-value=0.01 Score=62.66 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHh--------cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc
Q 012337 198 PIQKACIPAAAH--------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 269 (465)
Q Consensus 198 ~iQ~~~i~~~l~--------~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 269 (465)
|+|.-++-.++- ..+.+++.-+=|.|||......++-+++- .+..++.+++++
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~-------------------~g~~~~~i~~~A 61 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL-------------------DGEPGAEIYCAA 61 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc-------------------CCccCceEEEEe
Confidence 578777766651 12347888899999998755544444421 133467899999
Q ss_pred ccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh-CCCcEEEeChHHHHHHHhCCCccccccCceeEEEecch
Q 012337 270 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 270 Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~-~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEa 348 (465)
++++-|..+++.+..+........... ....+. ..-.|..-..+.+...+........-+ +..++|+||+
T Consensus 62 ~~~~QA~~~f~~~~~~i~~~~~l~~~~--------~~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~-~~~~~i~DE~ 132 (477)
T PF03354_consen 62 NTRDQAKIVFDEAKKMIEASPELRKRK--------KPKIIKSNKKEIEFPKTGSFFKALSSDADSLDGL-NPSLAIFDEL 132 (477)
T ss_pred CCHHHHHHHHHHHHHHHHhChhhccch--------hhhhhhhhceEEEEcCCCcEEEEEecCCCCccCC-CCceEEEeCC
Confidence 999999999999998876422111000 000001 112344333344433343322221223 5689999999
Q ss_pred hHhhhcCCHHHH
Q 012337 349 DRMIENGHFREL 360 (465)
Q Consensus 349 h~ll~~~~~~~l 360 (465)
|.+-+...+..+
T Consensus 133 h~~~~~~~~~~l 144 (477)
T PF03354_consen 133 HAHKDDELYDAL 144 (477)
T ss_pred CCCCCHHHHHHH
Confidence 987643333333
No 200
>PRK05642 DNA replication initiation factor; Validated
Probab=96.31 E-value=0.012 Score=56.07 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=21.0
Q ss_pred cCceeEEEecchhHhhhcCC-HHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGH-FRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~-~~~l~~i~~~l~ 368 (465)
+.++.+||||++|.+..... ...+.++++.+.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~ 127 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLR 127 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHH
Confidence 34567899999997753333 344667776654
No 201
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.28 E-value=0.018 Score=64.05 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 194 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
..|++-|.+++.. ....++|.|..|||||.+...=+ .+++.. .+..+-++|+|+.|+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ri-a~Li~~------------------~~v~p~~IL~lTFTnk 60 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRI-AWLLSV------------------ENASPHSIMAVTFTNK 60 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHH-HHHHHc------------------CCCCHHHeEeeeccHH
Confidence 3689999998843 35679999999999998743333 333321 1122347999999999
Q ss_pred HHHHHHHHHHHHH
Q 012337 274 LALQVTDHLKEVA 286 (465)
Q Consensus 274 La~Qv~~~l~~l~ 286 (465)
.|..+.+.+..+.
T Consensus 61 AA~em~~Rl~~~~ 73 (715)
T TIGR01075 61 AAAEMRHRIGALL 73 (715)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
No 202
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.28 E-value=0.037 Score=57.17 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=30.5
Q ss_pred CCCCCcHHHHHHHH---HHHhcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 192 GFKEPTPIQKACIP---AAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 192 g~~~p~~iQ~~~i~---~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|....|-|-+-+- ..|..+.+.++..|+|+|||.+.+-.++..-
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq 60 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQ 60 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHH
Confidence 35566777754332 3345677899999999999987665555443
No 203
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.28 E-value=0.064 Score=45.60 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCChhHH
Q 012337 211 GKDIIGAAETGSGKTLA 227 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~ 227 (465)
+..+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999953
No 204
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.035 Score=56.45 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCChhHHhhHHH
Q 012337 212 KDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpi 232 (465)
+.+++.||||+|||......+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 568899999999997755444
No 205
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.23 E-value=0.011 Score=61.21 Aligned_cols=68 Identities=24% Similarity=0.295 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHHh----cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 195 EPTPIQKACIPAAAH----QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~----~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+.=|-+||..+.. +.+.-++-|.||||||++..- ++..+ .+ -+||++|
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~An-VI~~~------------------------~r-PtLV~Ah 65 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMAN-VIAKV------------------------QR-PTLVLAH 65 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHH-HHHHh------------------------CC-CeEEEec
Confidence 566667777766542 234567789999999987432 22222 12 3899999
Q ss_pred cHHHHHHHHHHHHHHHcc
Q 012337 271 TRELALQVTDHLKEVAKG 288 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~ 288 (465)
.+-||.|.+.+|+.++..
T Consensus 66 NKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 66 NKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred chhHHHHHHHHHHHhCcC
Confidence 999999999999999753
No 206
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.22 E-value=0.022 Score=62.62 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=53.8
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 194 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
..+++-|+.++- ....+++|.|..|||||.+.+--+. +++.. ....+-++|+|+.||.
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~a-yLl~~------------------~~~~~~~IL~ltft~~ 252 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAG-WLLAR------------------GQAQPEQILLLAFGRQ 252 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHH-HHHHh------------------CCCCHHHeEEEeccHH
Confidence 479999999883 2346789999999999987443332 33221 1112347999999999
Q ss_pred HHHHHHHHHHHHHccCCceE
Q 012337 274 LALQVTDHLKEVAKGINVRV 293 (465)
Q Consensus 274 La~Qv~~~l~~l~~~~~~~v 293 (465)
.|..+.+.+.......++.+
T Consensus 253 AA~em~eRL~~~lg~~~v~v 272 (684)
T PRK11054 253 AAEEMDERIRERLGTEDITA 272 (684)
T ss_pred HHHHHHHHHHHhcCCCCcEE
Confidence 99999998887654333333
No 207
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.18 E-value=0.0031 Score=57.10 Aligned_cols=111 Identities=18% Similarity=0.265 Sum_probs=47.3
Q ss_pred EEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEE
Q 012337 215 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVV 294 (465)
Q Consensus 215 l~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~ 294 (465)
|+.|+-|-||+.+..+.+...+.. ...+++|.+|+.+-+..+.+.+..-+...+++..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------------------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~ 58 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------------------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEE 58 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------------------EEEE-SS--S-HHHHHCC------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------------------cCceEEEecCCHHHHHHHHHHHHhhccccccccc
Confidence 568899999998876655443321 1247999999999888888877665544444330
Q ss_pred EEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHH
Q 012337 295 PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 364 (465)
Q Consensus 295 ~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~ 364 (465)
..... .........+..|-+..|..+... ....++||||||=.|- ...+..++
T Consensus 59 ~~~~~---~~~~~~~~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll 111 (177)
T PF05127_consen 59 KKKRI---GQIIKLRFNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLL 111 (177)
T ss_dssp -----------------CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHH
T ss_pred ccccc---ccccccccccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHH
Confidence 00000 000011122467778888766321 1245799999998653 44455554
No 208
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.13 E-value=0.0059 Score=63.30 Aligned_cols=102 Identities=24% Similarity=0.211 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCC
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 290 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~ 290 (465)
.+-++-+|||.||||.- +|+++... -.++|--|.|-||..|++.+... |
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~a-----------------------ksGvycGPLrLLA~EV~~r~na~----g 239 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSA-----------------------KSGVYCGPLRLLAHEVYDRLNAL----G 239 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhh-----------------------ccceecchHHHHHHHHHHHhhhc----C
Confidence 34467789999999976 55555322 15899999999999999999876 6
Q ss_pred ceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCC
Q 012337 291 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 356 (465)
Q Consensus 291 ~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~ 356 (465)
+.|-.++|......... ...+..+=||-+++ ..-..+++.||||+..|-|.+.
T Consensus 240 ipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~-----------sv~~~yeVAViDEIQmm~Dp~R 292 (700)
T KOG0953|consen 240 IPCDLLTGEERRFVLDN--GNPAQHVSCTVEMV-----------SVNTPYEVAVIDEIQMMRDPSR 292 (700)
T ss_pred CCccccccceeeecCCC--CCcccceEEEEEEe-----------ecCCceEEEEehhHHhhcCccc
Confidence 67766666543211110 11244555554332 1123567788888887776554
No 209
>PRK14974 cell division protein FtsY; Provisional
Probab=96.11 E-value=0.053 Score=54.37 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=31.3
Q ss_pred CceeEEEecchhHhh-hcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 338 HTLSFFVLDEADRMI-ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 338 ~~i~~lViDEah~ll-~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
..+++||||.|.++. +......+..+...++ +..-+++++||..+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~------------------------pd~~iLVl~a~~g~ 266 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTK------------------------PDLVIFVGDALAGN 266 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhC------------------------CceEEEeeccccch
Confidence 356799999999875 2345666766666554 44567888998764
No 210
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.09 E-value=0.062 Score=50.64 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=21.3
Q ss_pred cCceeEEEecchhHhhhcC-CHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENG-HFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~-~~~~l~~i~~~l~ 368 (465)
+.++++||||.+|.+.... ....+..+++.+.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~ 127 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI 127 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHH
Confidence 4578899999999886432 2345555665553
No 211
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.07 E-value=0.016 Score=63.89 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=51.4
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.+++-|.+++.. ....++|.|..|||||.+...-+...+ .. .+..+-++|+|+.|+..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li-~~------------------~~v~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLI-RG------------------CGYQARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHH-Hh------------------cCCCHHHeeeEechHHH
Confidence 478999998853 356788889999999988544443333 21 01223379999999999
Q ss_pred HHHHHHHHHHHHc
Q 012337 275 ALQVTDHLKEVAK 287 (465)
Q Consensus 275 a~Qv~~~l~~l~~ 287 (465)
|..+.+.+..+..
T Consensus 60 A~em~~Rl~~~l~ 72 (672)
T PRK10919 60 AREMKERVAQTLG 72 (672)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987653
No 212
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.04 E-value=0.032 Score=58.49 Aligned_cols=32 Identities=9% Similarity=0.228 Sum_probs=20.0
Q ss_pred cCceeEEEecchhHhhhcC-CHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENG-HFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~-~~~~l~~i~~~l~ 368 (465)
+.++.+|||||+|.+.... ....+..+++.+.
T Consensus 209 ~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~ 241 (450)
T PRK00149 209 YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALH 241 (450)
T ss_pred HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHH
Confidence 3467799999999875322 2345555555553
No 213
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.97 E-value=0.014 Score=65.88 Aligned_cols=150 Identities=18% Similarity=0.119 Sum_probs=84.5
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 289 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~ 289 (465)
.|.++++.-..|.|||.+-+...+.+..+.....-..... .+.......-.|||+|. ++..|+..++..++...
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~-----e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~ 446 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVK-----EGENLVETGATLIICPN-AILMQWFEEIHKHISSL 446 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHh-----cccceeecCceEEECcH-HHHHHHHHHHHHhcccc
Confidence 3567788888999999987665555432211100000000 00011112247999996 45589999999887543
Q ss_pred CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC--Ccc---------ccc----cCceeE--EEecchhHhh
Q 012337 290 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG--EKH---------LVE----LHTLSF--FVLDEADRMI 352 (465)
Q Consensus 290 ~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~--~~~---------~~~----l~~i~~--lViDEah~ll 352 (465)
+++....|=....-....-...+|||++|+..|..-|... ... ... |-.+.| ||||||..+-
T Consensus 447 -lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve 525 (1394)
T KOG0298|consen 447 -LKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE 525 (1394)
T ss_pred -ceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc
Confidence 6666655543221111122246899999999998777543 111 111 222333 7999998543
Q ss_pred hcCCHHHHHHHHHhCC
Q 012337 353 ENGHFRELQSIIDMLP 368 (465)
Q Consensus 353 ~~~~~~~l~~i~~~l~ 368 (465)
. ........+..|+
T Consensus 526 -s-ssS~~a~M~~rL~ 539 (1394)
T KOG0298|consen 526 -S-SSSAAAEMVRRLH 539 (1394)
T ss_pred -c-hHHHHHHHHHHhh
Confidence 3 4555666666666
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.88 E-value=0.07 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
..++++|++|+|||.... .+.+++
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l 123 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNEL 123 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHH
Confidence 479999999999996644 344444
No 215
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.87 E-value=0.2 Score=55.73 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=18.8
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHh
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDM 366 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~ 366 (465)
..+.+|||||+|.|... ....|..++..
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHH
Confidence 34668999999999743 33445555554
No 216
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.84 E-value=0.089 Score=47.69 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=31.1
Q ss_pred EEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 214 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
+++.|++|+|||...+-.+...+. .+.+|+|++. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----------------------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----------------------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----------------------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999765444444331 1335787754 45566777666655
No 217
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.83 E-value=0.075 Score=53.93 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCChhHHhhH
Q 012337 211 GKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~l 230 (465)
++.+.+.||||-|||.+..=
T Consensus 203 ~~vi~LVGPTGVGKTTTlAK 222 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAK 222 (407)
T ss_pred CcEEEEECCCCCcHHHHHHH
Confidence 78899999999999987443
No 218
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.82 E-value=0.098 Score=54.78 Aligned_cols=32 Identities=6% Similarity=0.104 Sum_probs=20.3
Q ss_pred cCceeEEEecchhHhhhc-CCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIEN-GHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~-~~~~~l~~i~~~l~ 368 (465)
+.++.+|||||+|.+... .....+..+++.+.
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~ 236 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI 236 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 457789999999977422 12345555665553
No 219
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.81 E-value=0.027 Score=62.12 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHH
Q 012337 196 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 275 (465)
Q Consensus 196 p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La 275 (465)
+++-|.+++.. ....++|.|..|||||.+.+--+...+ .. .+..+.++|+|+.|+..|
T Consensus 2 Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll-~~------------------~~~~p~~IL~vTFt~~Aa 59 (664)
T TIGR01074 2 LNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLI-QN------------------CGYKARNIAAVTFTNKAA 59 (664)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHH-Hh------------------cCCCHHHeEEEeccHHHH
Confidence 68889888743 356899999999999977544444333 21 112344799999999999
Q ss_pred HHHHHHHHHHHc
Q 012337 276 LQVTDHLKEVAK 287 (465)
Q Consensus 276 ~Qv~~~l~~l~~ 287 (465)
.++...+.....
T Consensus 60 ~em~~Rl~~~l~ 71 (664)
T TIGR01074 60 REMKERVAKTLG 71 (664)
T ss_pred HHHHHHHHHHhC
Confidence 999999987654
No 220
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.79 E-value=0.14 Score=55.09 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=88.9
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI- 289 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~- 289 (465)
.+-.++..|=-.|||.... +++..++.. ..+.++++++|.+..+..+++++..++...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s--------------------~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f 312 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT--------------------FRGIKIGYTAHIRKATEPVFEEIGARLRQWF 312 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh--------------------CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhc
Confidence 4557888888999998655 666555432 235689999999999999999999876532
Q ss_pred -CceEEEEecCCCHHHHHHHHhCC--CcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHh
Q 012337 290 -NVRVVPIVGGMSTEKQERLLKAR--PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDM 366 (465)
Q Consensus 290 -~~~v~~~~gg~~~~~~~~~~~~~--~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~ 366 (465)
+..+..+.| ... .-.+.++ +.|.++|- . ......=..+.+||||||+.|-+ ..+..|+-.
T Consensus 313 ~~~~v~~vkG-e~I---~i~f~nG~kstI~FaSa-------r--ntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~ 375 (738)
T PHA03368 313 GASRVDHVKG-ETI---SFSFPDGSRSTIVFASS-------H--NTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGF 375 (738)
T ss_pred chhheeeecC-cEE---EEEecCCCccEEEEEec-------c--CCCCccCCcccEEEEechhhCCH----HHHHHHHHH
Confidence 111111122 111 0011112 24555532 0 11111123688999999998763 445556544
Q ss_pred CCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC--cHHHHHHhhhc
Q 012337 367 LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SADFRKKLKHG 417 (465)
Q Consensus 367 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~--~~~~~~~l~~~ 417 (465)
|+. ...++|++|.|-+. +..|+.+|+..
T Consensus 376 l~~-----------------------~n~k~I~ISS~Ns~~~sTSFL~nLk~a 405 (738)
T PHA03368 376 LNQ-----------------------TNCKIIFVSSTNTGKASTSFLYNLKGA 405 (738)
T ss_pred Hhc-----------------------cCccEEEEecCCCCccchHHHHhhcCc
Confidence 442 46789999999764 45677777553
No 221
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.78 E-value=0.11 Score=56.97 Aligned_cols=67 Identities=27% Similarity=0.381 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHHh---cC-CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 195 EPTPIQKACIPAAAH---QG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~---~~-~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+..|..+|..+.. ++ +..++.|-||||||+.... ++..+ ++ .+|||+|
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~------------------------~~-p~Lvi~~ 62 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV------------------------NR-PTLVIAH 62 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh------------------------CC-CEEEEEC
Confidence 688999988877643 23 2567899999999987432 22221 12 3899999
Q ss_pred cHHHHHHHHHHHHHHHc
Q 012337 271 TRELALQVTDHLKEVAK 287 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~ 287 (465)
+..+|.|++..|+.++.
T Consensus 63 n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 63 NKTLAAQLYNEFKEFFP 79 (655)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 99999999999999864
No 222
>PRK08727 hypothetical protein; Validated
Probab=95.74 E-value=0.044 Score=52.14 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCChhHHhh
Q 012337 212 KDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~ 229 (465)
.-++++|++|+|||....
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 459999999999995533
No 223
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.73 E-value=0.044 Score=53.58 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=36.6
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
.+++++|+|+.|||. ++.++.+.+... . .......|-++|-+|...-....+..+-..
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~-----~------d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQ-----S------DEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCC-----C------CCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 489999999999997 345554332110 0 011123478888899887766666666443
No 224
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.72 E-value=0.035 Score=55.40 Aligned_cols=67 Identities=28% Similarity=0.373 Sum_probs=46.6
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 012337 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 264 (465)
Q Consensus 185 ~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (465)
+..+...|+ +++.|...+..++..+.+++++|+|||||| .++-.++..+... ....+
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~--------------------~~~~r 180 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQ--------------------DPTER 180 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhc--------------------CCCce
Confidence 344445554 567888888877778899999999999999 4445555543210 12347
Q ss_pred EEEEcccHHH
Q 012337 265 ALIITPTREL 274 (465)
Q Consensus 265 vLil~Ptr~L 274 (465)
+++|-.+.||
T Consensus 181 ivtIEd~~El 190 (319)
T PRK13894 181 VFIIEDTGEI 190 (319)
T ss_pred EEEEcCCCcc
Confidence 8888888876
No 225
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.69 E-value=0.042 Score=54.75 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=45.0
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 012337 187 SIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 266 (465)
Q Consensus 187 ~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 266 (465)
.+...|+ +++.|...+..++..+.++|++|+||||||.. +-.++..+... ...-+++
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~--------------------~~~~riv 178 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS--------------------APEDRLV 178 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC--------------------CCCceEE
Confidence 3445554 67888888888888888999999999999954 34455544211 1123677
Q ss_pred EEcccHHHH
Q 012337 267 IITPTRELA 275 (465)
Q Consensus 267 il~Ptr~La 275 (465)
+|=.+.||.
T Consensus 179 tiEd~~El~ 187 (323)
T PRK13833 179 ILEDTAEIQ 187 (323)
T ss_pred EecCCcccc
Confidence 777777763
No 226
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.68 E-value=0.11 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCChhHHhhHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lp 231 (465)
.++.+++.||||+|||.+....
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kL 241 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKL 241 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999775433
No 227
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.61 E-value=0.071 Score=50.79 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+..++++||+|+|||...
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999653
No 228
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.53 E-value=0.059 Score=55.68 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
+..++++|++|+|||... ..+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~-~ai~~~l 160 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLL-HAIGNEI 160 (405)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 345899999999999654 3344444
No 229
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.53 E-value=0.034 Score=46.85 Aligned_cols=19 Identities=37% Similarity=0.399 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+..+++.||+|+|||....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 5679999999999997643
No 230
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.51 E-value=0.055 Score=52.66 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=25.2
Q ss_pred cccCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 335 VELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 335 ~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
...+.+.++||||||.|- ..-|..+...++...
T Consensus 125 ~~~~~fKiiIlDEcdsmt-sdaq~aLrr~mE~~s 157 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMT-SDAQAALRRTMEDFS 157 (346)
T ss_pred CCCCcceEEEEechhhhh-HHHHHHHHHHHhccc
Confidence 345677899999999987 556778888877644
No 231
>PHA02533 17 large terminase protein; Provisional
Probab=95.50 E-value=0.12 Score=55.23 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=52.2
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|.|+|...+..+. .++-.++..+=..|||.+....++...+. ..+..+++++|++.-
T Consensus 59 ~L~p~Q~~i~~~~~-~~R~~ii~~aRq~GKStl~a~~al~~a~~---------------------~~~~~v~i~A~~~~Q 116 (534)
T PHA02533 59 QMRDYQKDMLKIMH-KNRFNACNLSRQLGKTTVVAIFLLHYVCF---------------------NKDKNVGILAHKASM 116 (534)
T ss_pred CCcHHHHHHHHHHh-cCeEEEEEEcCcCChHHHHHHHHHHHHHh---------------------CCCCEEEEEeCCHHH
Confidence 68899999987663 35555666777889999876555444321 124489999999999
Q ss_pred HHHHHHHHHHHHcc
Q 012337 275 ALQVTDHLKEVAKG 288 (465)
Q Consensus 275 a~Qv~~~l~~l~~~ 288 (465)
|..+.+.++.+...
T Consensus 117 A~~vF~~ik~~ie~ 130 (534)
T PHA02533 117 AAEVLDRTKQAIEL 130 (534)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888876543
No 232
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.49 E-value=0.037 Score=61.57 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.+++-|.+++.. ....++|.|..|||||.+...=+. +++.. .+..+-++|+|+-|+..
T Consensus 9 ~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria-~Li~~------------------~~v~p~~IL~lTFT~kA 66 (721)
T PRK11773 9 SLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIA-WLMQV------------------ENASPYSIMAVTFTNKA 66 (721)
T ss_pred hcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHH-HHHHc------------------CCCChhHeEeeeccHHH
Confidence 589999999853 356789999999999987433332 33221 11223479999999999
Q ss_pred HHHHHHHHHHHHc
Q 012337 275 ALQVTDHLKEVAK 287 (465)
Q Consensus 275 a~Qv~~~l~~l~~ 287 (465)
|..+.+.+..+..
T Consensus 67 A~Em~~Rl~~~~~ 79 (721)
T PRK11773 67 AAEMRHRIEQLLG 79 (721)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 233
>PRK12377 putative replication protein; Provisional
Probab=95.48 E-value=0.12 Score=49.65 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
..++++.|++|+|||...
T Consensus 101 ~~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA 118 (248)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999653
No 234
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.47 E-value=0.069 Score=52.81 Aligned_cols=68 Identities=28% Similarity=0.360 Sum_probs=45.4
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 012337 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 264 (465)
Q Consensus 185 ~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (465)
+..+...|+ +++-|...+..++..+.+++++|+||||||.. +-.++..+.. ....-+
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~--------------------~~~~~r 164 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAK--------------------NDPTDR 164 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhc--------------------cCCCce
Confidence 444545553 56777777777777788999999999999954 3444444421 011336
Q ss_pred EEEEcccHHHH
Q 012337 265 ALIITPTRELA 275 (465)
Q Consensus 265 vLil~Ptr~La 275 (465)
+++|=-+.|+.
T Consensus 165 i~tiEd~~El~ 175 (299)
T TIGR02782 165 VVIIEDTRELQ 175 (299)
T ss_pred EEEECCchhhc
Confidence 88888888873
No 235
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.33 Score=49.43 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=20.1
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDML 367 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l 367 (465)
...-+||+||+|.|++... ..+..|+...
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 4455899999999996644 5555555443
No 236
>PRK06921 hypothetical protein; Provisional
Probab=95.31 E-value=0.077 Score=51.55 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.+..+++.|++|+|||.... .+.+.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l 141 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANEL 141 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHH
Confidence 36789999999999996543 334444
No 237
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.27 E-value=0.087 Score=50.81 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=33.1
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHL 282 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l 282 (465)
.++.++++.|++|+|||..+..-. +.+.+. + .-++++++.+|+.++...+
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~-~~l~~~----------------------g-~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIG-NELLKA----------------------G-ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHH-HHHHHc----------------------C-CeEEEEEHHHHHHHHHHHH
Confidence 367899999999999997654433 333211 2 3455667777777766554
No 238
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.25 E-value=0.11 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=17.5
Q ss_pred HHhcCC--cEEEEcCCCCChhHHhh
Q 012337 207 AAHQGK--DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 207 ~l~~~~--dvl~~a~TGsGKT~~~~ 229 (465)
++.++. .+++.||+|+|||....
T Consensus 30 ~~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 30 AVDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred HHhCCCCceEEEECCCCCCHHHHHH
Confidence 334455 79999999999997643
No 239
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.21 E-value=0.2 Score=54.96 Aligned_cols=138 Identities=14% Similarity=0.197 Sum_probs=79.1
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhcCC-cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 012337 188 IYRLGFKEPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 266 (465)
Q Consensus 188 l~~~g~~~p~~iQ~~~i~~~l~~~~-dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 266 (465)
+.....+.+..-|.+.+..++..+. -+++.|.-|-|||.+..+.+.... +. ..+.+++
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~-~~--------------------~~~~~ii 265 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAA-RL--------------------AGSVRII 265 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHH-Hh--------------------cCCceEE
Confidence 4555444555555556666665444 688889999999999887763322 11 0145799
Q ss_pred EEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEec
Q 012337 267 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 346 (465)
Q Consensus 267 il~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViD 346 (465)
|.+|+.+-+..+..-+.+-+...|++-......... ....-.....|=+-+|.... . .-++||||
T Consensus 266 VTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~--~~~~~~~~~~i~y~~P~~a~------------~-~~DllvVD 330 (758)
T COG1444 266 VTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE--IREVSGDGFRIEYVPPDDAQ------------E-EADLLVVD 330 (758)
T ss_pred EeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc--eeeecCCceeEEeeCcchhc------------c-cCCEEEEe
Confidence 999999988888877776655555432211111000 00000012234455554321 1 15799999
Q ss_pred chhHhhhcCCHHHHHHHHH
Q 012337 347 EADRMIENGHFRELQSIID 365 (465)
Q Consensus 347 Eah~ll~~~~~~~l~~i~~ 365 (465)
||=.|- ..-+..++.
T Consensus 331 EAAaIp----lplL~~l~~ 345 (758)
T COG1444 331 EAAAIP----LPLLHKLLR 345 (758)
T ss_pred hhhcCC----hHHHHHHHh
Confidence 998653 455555653
No 240
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.18 E-value=0.075 Score=54.72 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=68.3
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH-HHHHHHHHHHHHHccCCc
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE-LALQVTDHLKEVAKGINV 291 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~-La~Qv~~~l~~l~~~~~~ 291 (465)
-.++.|..|||||.+.++-++..++.. ..+.++|++-||.. |..-+...+.......++
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--------------------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--------------------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--------------------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 357889999999999888888777542 12457999999988 555667777766554444
Q ss_pred eEEEEecCCCHHHHHHHHhC-CCcEEEeCh-HHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhC
Q 012337 292 RVVPIVGGMSTEKQERLLKA-RPELVVGTP-GRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDML 367 (465)
Q Consensus 292 ~v~~~~gg~~~~~~~~~~~~-~~dIiV~TP-~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l 367 (465)
....-...... .. .+.. +..|++..- ..-. +......+.++.+|||..+- . ..+..++..|
T Consensus 63 ~~~~~~~~~~~--~i-~~~~~g~~i~f~g~~d~~~--------~ik~~~~~~~~~idEa~~~~-~---~~~~~l~~rl 125 (396)
T TIGR01547 63 NYEFKKSKSSM--EI-KILNTGKKFIFKGLNDKPN--------KLKSGAGIAIIWFEEASQLT-F---EDIKELIPRL 125 (396)
T ss_pred hhheeecCCcc--EE-EecCCCeEEEeecccCChh--------HhhCcceeeeehhhhhhhcC-H---HHHHHHHHHh
Confidence 31111111100 00 0111 344555433 1111 11223457899999999874 2 2444444444
No 241
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.17 E-value=0.093 Score=54.84 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=20.2
Q ss_pred cCceeEEEecchhHhhhcC-CHHHHHHHHHhC
Q 012337 337 LHTLSFFVLDEADRMIENG-HFRELQSIIDML 367 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~-~~~~l~~i~~~l 367 (465)
+.++.+|||||+|.+.... ....+..+++.+
T Consensus 200 ~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l 231 (445)
T PRK12422 200 YRNVDALFIEDIEVFSGKGATQEEFFHTFNSL 231 (445)
T ss_pred cccCCEEEEcchhhhcCChhhHHHHHHHHHHH
Confidence 3467899999999875322 244555565544
No 242
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.15 E-value=0.12 Score=53.89 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=19.5
Q ss_pred ceeEEEecchhHhhhcC-CHHHHHHHHHhCC
Q 012337 339 TLSFFVLDEADRMIENG-HFRELQSIIDMLP 368 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~-~~~~l~~i~~~l~ 368 (465)
++.+|||||+|.+.+.. ....+..++..+.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~ 224 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELH 224 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHH
Confidence 46789999999886432 2245555665543
No 243
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.14 E-value=0.11 Score=49.05 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+..++++|++|+|||...
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999553
No 244
>PRK08116 hypothetical protein; Validated
Probab=95.08 E-value=0.18 Score=49.10 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=18.2
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHHH
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRLL 237 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l~ 237 (465)
..++++|++|+|||.... .+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~ 139 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELI 139 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 349999999999996644 3555553
No 245
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.00 E-value=0.078 Score=49.75 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.+..+++.|++|+|||....
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999996643
No 246
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.91 E-value=0.21 Score=54.95 Aligned_cols=67 Identities=28% Similarity=0.374 Sum_probs=50.7
Q ss_pred CCcHHHHHHHHHHHh---cC-CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 195 EPTPIQKACIPAAAH---QG-KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~---~~-~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|++.|..++..++. ++ +..++.|.||||||+.+.. ++... +..+|||+|
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~~-------------------------~r~vLIVt~ 65 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIARL-------------------------QRPTLVLAH 65 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-------------------------CCCEEEEEC
Confidence 799999999987743 22 2567899999999977432 22211 124999999
Q ss_pred cHHHHHHHHHHHHHHHc
Q 012337 271 TRELALQVTDHLKEVAK 287 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~ 287 (465)
+...|.|+++.|..++.
T Consensus 66 ~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 66 NKTLAAQLYSEFKEFFP 82 (652)
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 99999999999998864
No 247
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.89 E-value=0.23 Score=50.87 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCChhHH
Q 012337 211 GKDIIGAAETGSGKTLA 227 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~ 227 (465)
+.++++.||+|+|||.+
T Consensus 55 ~~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT 71 (394)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35799999999999975
No 248
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.86 E-value=0.34 Score=46.92 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=20.0
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQR 235 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~ 235 (465)
..|.-+++.|++|+|||...+..+.+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457789999999999996554444443
No 249
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.42 Score=50.59 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=18.7
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpi 232 (465)
..|..++++|+||+|||......+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 357788999999999998764433
No 250
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.76 E-value=0.4 Score=46.60 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=18.3
Q ss_pred cCCcEEEEcCCCCChhHHhhHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpi 232 (465)
.+..+++.+++|+|||..+.+-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~ 96 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMA 96 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 45788999999999998765443
No 251
>PRK09183 transposase/IS protein; Provisional
Probab=94.74 E-value=0.18 Score=48.80 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=19.3
Q ss_pred HhcCCcEEEEcCCCCChhHHhhHH
Q 012337 208 AHQGKDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 208 l~~~~dvl~~a~TGsGKT~~~~lp 231 (465)
+..+.++++.||+|+|||......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 357889999999999999765443
No 252
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.73 E-value=0.068 Score=59.57 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 194 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
..|+|-|.+++.. ....++|.|..|||||.+...-+...+. .. +-.+-++|+|+-|+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~-~~------------------~i~P~~IL~lTFT~k 60 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIA-EK------------------NVAPWNILAITFTNK 60 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CCCHHHeeeeeccHH
Confidence 3589999999853 3567999999999999875444443331 10 112236999999999
Q ss_pred HHHHHHHHHHHHHc
Q 012337 274 LALQVTDHLKEVAK 287 (465)
Q Consensus 274 La~Qv~~~l~~l~~ 287 (465)
.|..+.+.+..++.
T Consensus 61 AA~em~~Rl~~~~~ 74 (726)
T TIGR01073 61 AAREMKERVEKLLG 74 (726)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988887754
No 253
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.60 E-value=0.21 Score=53.75 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=20.9
Q ss_pred cCceeEEEecchhHhhhcCC-HHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGH-FRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~-~~~l~~i~~~l~ 368 (465)
+.++++||||++|.+..... ...+.++++.+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~ 407 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH 407 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH
Confidence 44678999999998864332 345556665554
No 254
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.13 Score=55.72 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.5
Q ss_pred cEEEEcCCCCChhHHhhHH
Q 012337 213 DIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lp 231 (465)
-+|++||.|+|||.++.+.
T Consensus 39 AyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4699999999999776543
No 255
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.48 E-value=0.18 Score=46.56 Aligned_cols=20 Identities=30% Similarity=0.202 Sum_probs=15.3
Q ss_pred cEEEEcCCCCChhHHhhHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpi 232 (465)
-+++.||||+|||.+..=.+
T Consensus 3 vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHH
Confidence 36889999999998754333
No 256
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.46 E-value=0.11 Score=53.97 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=24.1
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhh
Q 012337 196 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 196 p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~ 229 (465)
+-.....++..+ ..++++++.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L-~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRL-TIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHH-hcCCCEEEECCCCCCHHHHHH
Confidence 344445555555 479999999999999997654
No 257
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.43 E-value=0.45 Score=58.45 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 195 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
.+++-|..++..++.+ .+-+++.|+.|+|||.+. -.++..+ +. .+.++++++||..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~-~~---------------------~G~~V~~lAPTgr 485 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLA-SE---------------------QGYEIQIITAGSL 485 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHH-Hh---------------------cCCeEEEEeCCHH
Confidence 6899999999888754 356788999999999652 2222222 11 2457999999998
Q ss_pred HHHHHHHHH
Q 012337 274 LALQVTDHL 282 (465)
Q Consensus 274 La~Qv~~~l 282 (465)
.+.++.+..
T Consensus 486 AA~~L~e~~ 494 (1960)
T TIGR02760 486 SAQELRQKI 494 (1960)
T ss_pred HHHHHHHHh
Confidence 877776554
No 258
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.36 E-value=0.18 Score=48.72 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=23.2
Q ss_pred CCcHHHHHHHHHH---HhcCC-cEEEEcCCCCChhHHhh
Q 012337 195 EPTPIQKACIPAA---AHQGK-DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 195 ~p~~iQ~~~i~~~---l~~~~-dvl~~a~TGsGKT~~~~ 229 (465)
.+++.+.+++..+ +..+. .++++|++|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4566666666543 22333 68899999999996543
No 259
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.34 E-value=0.16 Score=55.97 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCChhHHhhHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpi 232 (465)
+.-+.+.||||+|||.+....+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4457899999999998765444
No 260
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.33 E-value=0.23 Score=46.76 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=34.1
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
.|..+++.|++|+|||...+-.+.+.+.+. +-+++|++- .+-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----------------------ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF----------------------GEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH----------------------T--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----------------------CCcEEEEEe-cCCHHHHHHHHHHc
Confidence 467899999999999977655555555431 125787773 44456666666654
No 261
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.22 E-value=0.23 Score=47.97 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
..++++.||+|+|||...-
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3578999999999997643
No 262
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.21 E-value=0.2 Score=50.17 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.++++.|+||+|||...
T Consensus 182 ~~~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS 200 (329)
T ss_pred cCCcEEEECCCCCcHHHHH
Confidence 4578999999999999743
No 263
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.18 E-value=0.17 Score=55.08 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.8
Q ss_pred cEEEEcCCCCChhHHhhHH
Q 012337 213 DIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lp 231 (465)
.+|++||.|+|||.+..+.
T Consensus 40 a~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5899999999999776543
No 264
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.15 E-value=0.47 Score=48.61 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=22.4
Q ss_pred ceeEEEecchhHhhhc-CCHHHHHHHHHhCC
Q 012337 339 TLSFFVLDEADRMIEN-GHFRELQSIIDMLP 368 (465)
Q Consensus 339 ~i~~lViDEah~ll~~-~~~~~l~~i~~~l~ 368 (465)
++++|+||.++.+... .....+-++++.|.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~ 205 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALL 205 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHH
Confidence 7889999999988644 23566677777776
No 265
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.14 E-value=1 Score=48.99 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=50.0
Q ss_pred CCcHHHHHHHHHHHh--cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 195 EPTPIQKACIPAAAH--QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~--~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
-|.|.=.+-|..++. ..+-.++.+|=|.|||.+..+.++..+.. .+.+++|.+|..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------------------~Gi~IlvTAH~~ 226 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----------------------LEIDIVVQAQRK 226 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----------------------cCCeEEEECCCh
Confidence 345555555555543 23456788999999998866555533310 245899999999
Q ss_pred HHHHHHHHHHHHHHcc
Q 012337 273 ELALQVTDHLKEVAKG 288 (465)
Q Consensus 273 ~La~Qv~~~l~~l~~~ 288 (465)
.-+.++...+...+..
T Consensus 227 ~ts~evF~rv~~~le~ 242 (752)
T PHA03333 227 TMCLTLYNRVETVVHA 242 (752)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999988887763
No 266
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.06 E-value=0.15 Score=60.02 Aligned_cols=125 Identities=22% Similarity=0.227 Sum_probs=75.3
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHH
Q 012337 196 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELA 275 (465)
Q Consensus 196 p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La 275 (465)
+|+-|.++|. ..+.+++|.|.-|||||.+.+--++..+... ...-++|+|+=|+..|
T Consensus 2 ~t~~Q~~ai~---~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--------------------~~~~~il~~tFt~~aa 58 (1232)
T TIGR02785 2 WTDEQWQAIY---TRGQNILVSASAGSGKTAVLVERIIKKILRG--------------------VDIDRLLVVTFTNAAA 58 (1232)
T ss_pred CCHHHHHHHh---CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--------------------CCHhhEEEEeccHHHH
Confidence 5889999985 3588999999999999998766666655321 1112699999999999
Q ss_pred HHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH
Q 012337 276 LQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 350 (465)
Q Consensus 276 ~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ 350 (465)
..+..++.......- . .......-.+.+..-...-|+|-..+...+-+.......|. -.+=|.||...
T Consensus 59 ~e~~~ri~~~l~~~~-~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 59 REMKERIEEALQKAL-Q-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred HHHHHHHHHHHHHHH-h-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 998888877543110 0 00011111122222345678888887654432211112221 13345887775
No 267
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.04 E-value=0.23 Score=54.53 Aligned_cols=28 Identities=11% Similarity=0.361 Sum_probs=18.3
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHh
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDM 366 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~ 366 (465)
...+++||||+|.|.. .-+..+..+++.
T Consensus 118 gr~KVIIIDEah~LT~-~A~NALLKtLEE 145 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN-HAFNAMLKTLEE 145 (830)
T ss_pred CCceEEEEeChhhCCH-HHHHHHHHHHHh
Confidence 4578999999998753 334444445544
No 268
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.01 E-value=0.56 Score=56.52 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 195 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
.+++.|..++..++.+ .+-+++.|..|+|||.+. -.++..+... ....+.+++.++||-.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l------------------~~~~~~~V~glAPTgr 1027 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL------------------PESERPRVVGLGPTHR 1027 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh------------------hcccCceEEEECCcHH
Confidence 6899999999988753 357899999999999763 2222222110 1123457999999998
Q ss_pred HHHHHH
Q 012337 274 LALQVT 279 (465)
Q Consensus 274 La~Qv~ 279 (465)
.|.++.
T Consensus 1028 AAk~L~ 1033 (1747)
T PRK13709 1028 AVGEMR 1033 (1747)
T ss_pred HHHHHH
Confidence 876554
No 269
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.29 Score=51.59 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCChhHHhhHH
Q 012337 212 KDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lp 231 (465)
+.+|++||.|+|||.+..+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 36899999999999875543
No 270
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.85 E-value=0.091 Score=52.91 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 201 KACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 201 ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
...+..++..+.+++++|+||||||.. +-.++..+
T Consensus 152 ~~~l~~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i 186 (344)
T PRK13851 152 EAFLHACVVGRLTMLLCGPTGSGKTTM-SKTLISAI 186 (344)
T ss_pred HHHHHHHHHcCCeEEEECCCCccHHHH-HHHHHccc
Confidence 344555566789999999999999954 33344443
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.83 E-value=0.58 Score=46.38 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=17.2
Q ss_pred ceeEEEecchhHhhhcCCHHHHHHHHHh
Q 012337 339 TLSFFVLDEADRMIENGHFRELQSIIDM 366 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~~~~l~~i~~~ 366 (465)
..++|||||+|.+........+..+++.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~ 127 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEA 127 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHh
Confidence 4568999999988322233444444544
No 272
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.77 E-value=0.25 Score=52.29 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=43.7
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHc
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 287 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~ 287 (465)
.+.-+||+|..|||||.+++-=+.-.+|.-|. +-..+ .+||+.|.|-+..-+.+.|-.++.
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~----------------~l~~k-~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRG----------------PLQAK-PVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhcccc----------------ccccC-ceEEEcCcHHHHHHHHHhchhhcc
Confidence 35568999999999998765544444443321 11222 399999999999999999988854
No 273
>PRK04195 replication factor C large subunit; Provisional
Probab=93.74 E-value=0.2 Score=53.04 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
.+.+|+.||+|+|||...
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999654
No 274
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.69 E-value=0.35 Score=50.86 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=47.7
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc-HHHHHHHHHHHHHHHccC
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT-RELALQVTDHLKEVAKGI 289 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt-r~La~Qv~~~l~~l~~~~ 289 (465)
+.-+.+.||||+|||.+....+-....+. + ...-+||-+-+ |.-+ .+.+..++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-------------------G-~~kV~LI~~Dt~RigA---~EQLr~~Aeil 312 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH-------------------G-ASKVALLTTDSYRIGG---HEQLRIYGKIL 312 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc-------------------C-CCeEEEEeCCccchhH---HHHHHHHHHHh
Confidence 55688999999999988654443222111 0 11123333333 3333 33344444444
Q ss_pred CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHH
Q 012337 290 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLW 324 (465)
Q Consensus 290 ~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~ 324 (465)
++.+...............+...-.|+|-|+|+..
T Consensus 313 GVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 313 GVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred CCCeeccCCchhHHHHHHhccCCCeEEeCCCCcCh
Confidence 55554443333333333444455678999999553
No 275
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.68 E-value=0.17 Score=56.74 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.1
Q ss_pred cEEEEcCCCCChhHHhhHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpi 232 (465)
-+|++++.|+|||.+..+.+
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 37899999999998765544
No 276
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.65 E-value=0.17 Score=50.73 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHHHhcCC---cEEEEcCCCCChhHHhh
Q 012337 195 EPTPIQKACIPAAAHQGK---DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~---dvl~~a~TGsGKT~~~~ 229 (465)
.+.|+|...|..++.+|+ -+|++||.|.|||..+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 357999999999886654 47899999999996543
No 277
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.64 E-value=0.62 Score=55.53 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHh-cCCcEEEEcCCCCChhHHh--hHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAF--GLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~-~~~dvl~~a~TGsGKT~~~--~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.+++-|..++..++. .++-+++.|..|+|||.+. ++-++..+. ...+..++.++||
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~---------------------e~~g~~V~glAPT 893 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP---------------------ESERPRVVGLGPT 893 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh---------------------hccCceEEEEech
Confidence 689999999988874 2467899999999999773 233333221 1134579999999
Q ss_pred HHHHHHHH
Q 012337 272 RELALQVT 279 (465)
Q Consensus 272 r~La~Qv~ 279 (465)
-..+..+.
T Consensus 894 gkAa~~L~ 901 (1623)
T PRK14712 894 HRAVGEMR 901 (1623)
T ss_pred HHHHHHHH
Confidence 88876664
No 278
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.57 E-value=0.22 Score=41.99 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=13.2
Q ss_pred eeEEEecchhHhhhcC
Q 012337 340 LSFFVLDEADRMIENG 355 (465)
Q Consensus 340 i~~lViDEah~ll~~~ 355 (465)
-.+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999988554
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.56 E-value=0.39 Score=48.78 Aligned_cols=23 Identities=26% Similarity=0.102 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCCChhHHhhHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpi 232 (465)
.++.++++||||+|||....-.+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46678999999999997754433
No 280
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.49 E-value=0.77 Score=52.35 Aligned_cols=79 Identities=16% Similarity=0.341 Sum_probs=63.1
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.+++|++|+++-+..+++.|..+. .++++..++|+++.......+ .+..+|+|||. ++..| +++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie~G----IDI 728 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIETG----IDI 728 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcc----ccc
Confidence 4579999999999999998888764 367899999999876554433 35689999996 55555 788
Q ss_pred CceeEEEecchhHh
Q 012337 338 HTLSFFVLDEADRM 351 (465)
Q Consensus 338 ~~i~~lViDEah~l 351 (465)
.++.+||+..|++.
T Consensus 729 p~v~~VIi~~a~~~ 742 (926)
T TIGR00580 729 PNANTIIIERADKF 742 (926)
T ss_pred ccCCEEEEecCCCC
Confidence 99999999999753
No 281
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.43 E-value=0.018 Score=49.81 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=13.3
Q ss_pred cEEEEcCCCCChhHH
Q 012337 213 DIIGAAETGSGKTLA 227 (465)
Q Consensus 213 dvl~~a~TGsGKT~~ 227 (465)
+|++.||+|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 489999999999965
No 282
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.38 E-value=0.62 Score=47.22 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=19.4
Q ss_pred HHHHHhcCC--cEEEEcCCCCChhHHhhH
Q 012337 204 IPAAAHQGK--DIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 204 i~~~l~~~~--dvl~~a~TGsGKT~~~~l 230 (465)
+..++..++ ++|++||.|+|||..+-+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARL 67 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHH
Confidence 344554443 799999999999976543
No 283
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.36 E-value=0.81 Score=53.42 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=67.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.+++|++|+++-+..+++.+.++.. ++++..++|+++.......+ .+..+|+|||. ++..| +++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----IierG----IDI 877 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 877 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hhhcc----ccc
Confidence 34799999999999999998887643 56888999999886554433 35789999995 45555 789
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.++.+||++.||+.. ...+.++..+..
T Consensus 878 P~v~~VIi~~ad~fg----laq~~Qr~GRvG 904 (1147)
T PRK10689 878 PTANTIIIERADHFG----LAQLHQLRGRVG 904 (1147)
T ss_pred ccCCEEEEecCCCCC----HHHHHHHhhccC
Confidence 999999999998532 233445554443
No 284
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.35 E-value=0.59 Score=44.31 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=18.7
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIM 233 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil 233 (465)
..+.-+++.+++|+|||...+..+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999966433333
No 285
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.35 E-value=0.16 Score=46.35 Aligned_cols=34 Identities=35% Similarity=0.414 Sum_probs=29.3
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
.+++-|...+..++..+..++++++||||||...
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4678888888888888999999999999999654
No 286
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.31 E-value=0.24 Score=51.82 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=15.5
Q ss_pred cEEEEcCCCCChhHHhhHH
Q 012337 213 DIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lp 231 (465)
.+|++||.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999776543
No 287
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.28 E-value=0.15 Score=50.66 Aligned_cols=37 Identities=24% Similarity=0.174 Sum_probs=31.2
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHH
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~ 227 (465)
..|..+++-|...+..+...+.|+|++|.||||||..
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl 189 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL 189 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH
Confidence 3466889999999988887667999999999999964
No 288
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.25 E-value=0.27 Score=48.77 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
++.+++.|++|+|||....
T Consensus 156 ~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997644
No 289
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.22 E-value=0.76 Score=46.53 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.++++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999653 3344444
No 290
>PF13173 AAA_14: AAA domain
Probab=93.19 E-value=0.97 Score=38.41 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=19.6
Q ss_pred ceeEEEecchhHhhhcCCHHHHHHHHHhC
Q 012337 339 TLSFFVLDEADRMIENGHFRELQSIIDML 367 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~~~~l~~i~~~l 367 (465)
.-.+|+|||+|.+- +++..+..+.+.-
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG 87 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc
Confidence 44689999999884 4667777777643
No 291
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.18 E-value=0.34 Score=46.09 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=35.7
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
.|..+++.|++|+|||...+..+.+.+. .+-++||++ +.+-..++.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~-----------------------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ-----------------------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-----------------------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 4678999999999999765554554441 133588887 455666777776665
No 292
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.03 E-value=0.24 Score=48.60 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCChhHHhhHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpi 232 (465)
+..++++||||+|||......+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999997754433
No 293
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.02 E-value=0.24 Score=52.76 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHhhH
Q 012337 213 DIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~l 230 (465)
-+|++||.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 469999999999977554
No 294
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.02 E-value=0.28 Score=53.09 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCChhHHhhHHH
Q 012337 212 KDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpi 232 (465)
+.+|+++|.|+|||.+..+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358899999999998765543
No 295
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.99 E-value=1.4 Score=46.53 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=71.8
Q ss_pred CCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecC
Q 012337 220 TGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGG 299 (465)
Q Consensus 220 TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg 299 (465)
.+.|++..-++.+.+.+- .+..|-+||.+.+.+-|.|++..|. ...++.+..++|.
T Consensus 366 vF~gse~~K~lA~rq~v~---------------------~g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e 421 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVA---------------------SGFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGE 421 (593)
T ss_pred eeeecchhHHHHHHHHHh---------------------ccCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecc
Confidence 466777777777776662 2256779999999999999999987 2357899999999
Q ss_pred CCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecch
Q 012337 300 MSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 300 ~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEa 348 (465)
.+.......+ .+...|+|||- +|.+| .+|..+.+||.+..
T Consensus 422 ~~~~qrde~~~~FR~g~IwvLicTd-----ll~RG----iDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 422 RSQKQRDETMERFRIGKIWVLICTD-----LLARG----IDFKGVNLVINYDF 465 (593)
T ss_pred cchhHHHHHHHHHhccCeeEEEehh-----hhhcc----ccccCcceEEecCC
Confidence 8765443333 24678999984 56665 78999999999654
No 296
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.81 E-value=0.41 Score=46.72 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=33.7
Q ss_pred ccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHH
Q 012337 168 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 239 (465)
Q Consensus 168 ~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~ 239 (465)
+|.+..+|.+|++++-+.+.+. ....=|||.||||||||.+ +..+++++.++
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 4556667777777665543111 1233489999999999965 55677877544
No 297
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.81 E-value=0.2 Score=50.27 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 202 ACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 202 ~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
..+..++..+.+++++|+||||||.. +-.++..+
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTl-l~aL~~~i 184 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTF-TNAALREI 184 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHhhC
Confidence 44555556789999999999999954 34455544
No 298
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.71 E-value=0.39 Score=52.03 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.9
Q ss_pred cEEEEcCCCCChhHHhhH
Q 012337 213 DIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~l 230 (465)
-+|++|+.|+|||....+
T Consensus 40 A~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 469999999999977544
No 299
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.64 E-value=0.19 Score=50.00 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=33.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 193 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
+..+++.|..-+..++..+++++++++||||||. ++.+++..+
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~I 167 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFI 167 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhC
Confidence 3467888877777777889999999999999994 455555554
No 300
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.63 E-value=0.88 Score=56.04 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=44.3
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhh---HHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 195 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFG---LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~---lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.+++.|..++..++.+ ++-+++.|..|+|||.+.. -++.+.+ . ..+.+++.++|
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~---------------------~~g~~v~glAp 1076 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E---------------------SEQLQVIGLAP 1076 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H---------------------hcCCeEEEEeC
Confidence 7899999999988743 3457888999999997641 2222222 1 12457999999
Q ss_pred cHHHHHHHH
Q 012337 271 TRELALQVT 279 (465)
Q Consensus 271 tr~La~Qv~ 279 (465)
|-..|.++.
T Consensus 1077 T~~Aa~~L~ 1085 (1960)
T TIGR02760 1077 THEAVGELK 1085 (1960)
T ss_pred hHHHHHHHH
Confidence 987776554
No 301
>PLN03025 replication factor C subunit; Provisional
Probab=92.63 E-value=1.3 Score=44.20 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCChhHHhh
Q 012337 212 KDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~ 229 (465)
.+++++||+|+|||....
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999996543
No 302
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.53 E-value=1.1 Score=46.77 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHhhHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lp 231 (465)
...++++|++|+|||.+..-.
T Consensus 95 p~vI~lvG~~GsGKTTtaakL 115 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKL 115 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 346889999999999775433
No 303
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.42 E-value=0.55 Score=50.84 Aligned_cols=73 Identities=21% Similarity=0.372 Sum_probs=56.4
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.|+|+..|.++++.|... ++.+..++|+.+...+...+. ...+|||||. ++..+ +++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~arG----IDi 323 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAARG----LHI 323 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhcC----CCc
Confidence 457999999999999999988764 788999999998766544332 4679999994 45544 778
Q ss_pred CceeEEEecc
Q 012337 338 HTLSFFVLDE 347 (465)
Q Consensus 338 ~~i~~lViDE 347 (465)
..+.+||.-.
T Consensus 324 p~V~~VInyd 333 (572)
T PRK04537 324 DGVKYVYNYD 333 (572)
T ss_pred cCCCEEEEcC
Confidence 8888887643
No 304
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.37 E-value=0.71 Score=50.37 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=14.8
Q ss_pred EEEEcCCCCChhHHhhHH
Q 012337 214 IIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~lp 231 (465)
+|++|+.|+|||.+..+.
T Consensus 41 yLf~Gp~GvGKTTlAr~l 58 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLL 58 (647)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999875543
No 305
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.27 E-value=0.5 Score=48.88 Aligned_cols=23 Identities=30% Similarity=0.167 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCChhHHhhHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpi 232 (465)
.+.-+.+.||||+|||......+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA 212 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLA 212 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46678999999999998765443
No 306
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.23 E-value=1.1 Score=44.05 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4589999999999997753
No 307
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.21 E-value=0.76 Score=48.11 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=32.4
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
.|.-+++.+++|+|||...+..+.+.. + .+.++||+.- .+...|+......+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~----------------------~g~~vlYvs~-Ees~~qi~~ra~rl 130 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA-A----------------------AGGKVLYVSG-EESASQIKLRAERL 130 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-h----------------------cCCeEEEEEc-cccHHHHHHHHHHc
Confidence 356789999999999965444333322 1 1236888874 45556766655544
No 308
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.20 E-value=1.1 Score=46.34 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCChhHHhh
Q 012337 212 KDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~ 229 (465)
..+++.||+|+|||....
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 378999999999996643
No 309
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.15 E-value=0.52 Score=51.10 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.2
Q ss_pred cEEEEcCCCCChhHHhhHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpi 232 (465)
.+|++||.|+|||.+..+.+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999997755433
No 310
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.13 E-value=0.35 Score=54.15 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.3
Q ss_pred EEEEcCCCCChhHHhhH
Q 012337 214 IIGAAETGSGKTLAFGL 230 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~l 230 (465)
+|++||.|+|||.+..+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 48999999999977554
No 311
>CHL00181 cbbX CbbX; Provisional
Probab=92.12 E-value=1.3 Score=43.62 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCChhHHhhH
Q 012337 211 GKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~l 230 (465)
+.++++.||+|+|||.++..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 55799999999999987544
No 312
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.08 E-value=0.38 Score=52.70 Aligned_cols=113 Identities=24% Similarity=0.203 Sum_probs=65.8
Q ss_pred EEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceE
Q 012337 214 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRV 293 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v 293 (465)
.|+.---|-|||...+..++.+=.... + .+......-.||++|+- +..|+..++.+......+.+
T Consensus 155 gIladd~glgkt~~ti~l~l~~~~~~~-----------~---~~~~~~~kttLivcp~s-~~~qW~~elek~~~~~~l~v 219 (674)
T KOG1001|consen 155 GILADDMGLGKTVKTIALILKQKLKSK-----------E---EDRQKEFKTTLIVCPTS-LLTQWKTELEKVTEEDKLSI 219 (674)
T ss_pred ceEeeccccchHHHHHHHHHhcccCCc-----------c---hhhccccCceeEecchH-HHHHHHHHHhccCCccceEE
Confidence 577778899999885544443221110 0 00111223467888764 55788888866655556667
Q ss_pred EEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhh
Q 012337 294 VPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 294 ~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll 352 (465)
.+.+|... .......+||+++||+.|... . +..-..-.+|+||||.+-
T Consensus 220 ~v~~gr~k----d~~el~~~dVVltTy~il~~~----~---l~~i~w~Riildea~~ik 267 (674)
T KOG1001|consen 220 YVYHGRTK----DKSELNSYDVVLTTYDILKNS----P---LVKIKWLRIVLDEAHTIK 267 (674)
T ss_pred EEeccccc----ccchhcCCceEEeeHHHhhcc----c---ccceeEEEEEeccccccC
Confidence 66666111 112234678999999988640 1 111223358999999875
No 313
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.05 E-value=0.96 Score=44.07 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCChhHHhhHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpi 232 (465)
.+-+++++++|+|||.+..-.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3467788999999998754433
No 314
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=92.02 E-value=0.39 Score=48.38 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=31.6
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHH
Q 012337 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 185 ~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~ 227 (465)
+..+...|+ +++.+...+..++..+.+++++++||||||..
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl 194 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL 194 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 445555665 56777777777777788999999999999854
No 315
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.01 E-value=0.15 Score=52.35 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=34.6
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 284 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~ 284 (465)
++++.|+||||||.++++|-+-.. ...+||+=|--++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------------------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------------------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------------------CCCEEEEccchhHHHHHHHHHHH
Confidence 478999999999999998865422 12478888888887666655544
No 316
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.00 E-value=0.63 Score=42.60 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=34.0
Q ss_pred CcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 313 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 313 ~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
..++|-.+..++..+.... ....+.+|.||||+-+- ......+..|.+.|+
T Consensus 60 ~A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF~~-~~~v~~l~~lad~lg 110 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQFFD-EELVYVLNELADRLG 110 (201)
T ss_pred cceecCChHHHHHHHHhcc----cCCCcCEEEEehhHhCC-HHHHHHHHHHHhhcC
Confidence 4577778888888885431 12228899999999664 445556666666554
No 317
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.93 E-value=0.41 Score=50.81 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCChhHHhhHH
Q 012337 212 KDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lp 231 (465)
+.+|++||.|+|||.++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999776543
No 318
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.3 Score=55.21 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=32.1
Q ss_pred cccccCCCCHHHHHHHHHCCCC-CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFK-EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~-~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.+++....+...|+.+-+. -++|-+-.- ..+..-+-|++++|.|+|||+..
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~--~~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDN--FNITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhh--cccCCCcceeecCCCCCchhHHH
Confidence 4577777767777777665321 122211111 11223456999999999999764
No 319
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.91 E-value=0.43 Score=48.54 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHhhH
Q 012337 213 DIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~l 230 (465)
-+++.||.|+|||.....
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999976544
No 320
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.91 E-value=0.82 Score=47.11 Aligned_cols=19 Identities=32% Similarity=0.186 Sum_probs=15.5
Q ss_pred cEEEEcCCCCChhHHhhHH
Q 012337 213 DIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lp 231 (465)
.+|++||.|+|||.++.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999876543
No 321
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=91.90 E-value=0.73 Score=51.64 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=53.6
Q ss_pred CCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhcccccc
Q 012337 312 RPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQ 391 (465)
Q Consensus 312 ~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (465)
...|+++||..|..-|-.+ .+.+..|..|||||||++.......-|..++..-+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n----------------------- 60 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIESSQEAFILRLYRQKN----------------------- 60 (814)
T ss_pred cCCEEEEechhhHhHHhcC---CCCHHHccEEEEeecccccccccHHHHHHHHHHhC-----------------------
Confidence 3469999999987544333 37899999999999999987777788888887665
Q ss_pred CCCceEEEEeeeccC
Q 012337 392 RKKRQTLVFSATIAL 406 (465)
Q Consensus 392 ~~~~q~i~~SATl~~ 406 (465)
+..-+.+|||....
T Consensus 61 -~~gfIkafSdsP~~ 74 (814)
T TIGR00596 61 -KTGFIKAFSDNPEA 74 (814)
T ss_pred -CCcceEEecCCCcc
Confidence 45568899999864
No 322
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.89 E-value=1.2 Score=46.05 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=17.3
Q ss_pred CcEEEEcCCCCChhHHhhHHHHH
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQ 234 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~ 234 (465)
.-++++||||+|||....-.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34788999999999876554443
No 323
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.83 E-value=0.56 Score=48.69 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=55.1
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
..++||.++|+..|..++..|... ++.+..++|+.....+...+ .+..+|||||. ++..| +++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~rG----iDi 321 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAARG----LHI 321 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhhcC----CCc
Confidence 347999999999999988888653 78999999998876654433 35789999994 45554 778
Q ss_pred CceeEEEec
Q 012337 338 HTLSFFVLD 346 (465)
Q Consensus 338 ~~i~~lViD 346 (465)
..+.+||.-
T Consensus 322 p~v~~VI~~ 330 (423)
T PRK04837 322 PAVTHVFNY 330 (423)
T ss_pred cccCEEEEe
Confidence 888877643
No 324
>PF05729 NACHT: NACHT domain
Probab=91.83 E-value=1.7 Score=37.91 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=16.5
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
-+++.|+.|+|||... ..++..+
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHH
Confidence 3789999999999653 3444444
No 325
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.81 E-value=0.29 Score=44.45 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=17.9
Q ss_pred HhcCCcEEEEcCCCCChhHHhhHHH
Q 012337 208 AHQGKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 208 l~~~~dvl~~a~TGsGKT~~~~lpi 232 (465)
+.++.++++.|++|+|||..+..-+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~ 68 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIA 68 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHH
Confidence 3578899999999999998754433
No 326
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.76 E-value=1.2 Score=49.47 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCChhHHhh
Q 012337 212 KDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~ 229 (465)
.++++.||+|+|||....
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 379999999999996643
No 327
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.76 E-value=0.37 Score=51.70 Aligned_cols=45 Identities=27% Similarity=0.279 Sum_probs=35.0
Q ss_pred CCcHHHHHHHHHH---HhcCCcEEEEcCCCCChhHHhhHHHHHHHHHH
Q 012337 195 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEE 239 (465)
Q Consensus 195 ~p~~iQ~~~i~~~---l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~ 239 (465)
.|+.||...+..+ |..|+--|+.+|||+|||+..+-.++..+...
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 7899997766543 56788889999999999998776666665433
No 328
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.73 E-value=0.14 Score=55.13 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=49.2
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 195 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
..+|+|.+.+..+-.. -+.|+++.++-+|||.+.+..+...+ . ..+.-+|++.||..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i-~---------------------~~P~~~l~v~Pt~~ 73 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI-D---------------------QDPGPMLYVQPTDD 73 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE-E---------------------eCCCCEEEEEEcHH
Confidence 6789999998776321 24789999999999985444332222 1 11235999999999
Q ss_pred HHHHHH-HHHHHHHcc
Q 012337 274 LALQVT-DHLKEVAKG 288 (465)
Q Consensus 274 La~Qv~-~~l~~l~~~ 288 (465)
+|.+.. ..|..+...
T Consensus 74 ~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 74 AAKDFSKERLDPMIRA 89 (557)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 999876 556555543
No 329
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.73 E-value=0.94 Score=47.15 Aligned_cols=70 Identities=20% Similarity=0.405 Sum_probs=53.9
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
..++||.++|++-|..++..|.. .++.+..++|+.+...+...+. +..+|||||. ++..| +++
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~~~G----iDi 311 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VAARG----IDI 311 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccccC----ccC
Confidence 35799999999999999988876 3788999999998766544432 4679999994 44443 677
Q ss_pred CceeEEE
Q 012337 338 HTLSFFV 344 (465)
Q Consensus 338 ~~i~~lV 344 (465)
..+.+||
T Consensus 312 p~v~~VI 318 (434)
T PRK11192 312 DDVSHVI 318 (434)
T ss_pred CCCCEEE
Confidence 8888877
No 330
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.66 E-value=0.89 Score=46.01 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHhcCC---cEEEEcCCCCChhHHhhHHHHHHHH
Q 012337 206 AAAHQGK---DIIGAAETGSGKTLAFGLPIMQRLL 237 (465)
Q Consensus 206 ~~l~~~~---dvl~~a~TGsGKT~~~~lpil~~l~ 237 (465)
.++.+|+ -+|+.||.|+|||.... .+...++
T Consensus 37 ~a~~~grl~ha~L~~G~~G~GKttlA~-~lA~~Ll 70 (351)
T PRK09112 37 QAYREGKLHHALLFEGPEGIGKATLAF-HLANHIL 70 (351)
T ss_pred HHHHcCCCCeeEeeECCCCCCHHHHHH-HHHHHHc
Confidence 3344555 58999999999996543 3444443
No 331
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.63 E-value=0.86 Score=45.43 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=17.9
Q ss_pred HHhcCCcEEEEcCCCCChhHHh
Q 012337 207 AAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 207 ~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
.+..++++++.+++|+|||...
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHH
Confidence 3345889999999999999653
No 332
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=91.61 E-value=1.7 Score=47.80 Aligned_cols=76 Identities=26% Similarity=0.449 Sum_probs=58.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||+++|+..|..+.+.|... ++.+..++|+.........+ .+..+|+||| .++..| +++
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~rG----fDi 508 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG----LDL 508 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----ChhcCC----eee
Confidence 458999999999999999888775 67888899987765433222 3467899998 355555 788
Q ss_pred CceeEEEecchhH
Q 012337 338 HTLSFFVLDEADR 350 (465)
Q Consensus 338 ~~i~~lViDEah~ 350 (465)
..+.++|+=+++.
T Consensus 509 P~v~lVvi~Dadi 521 (655)
T TIGR00631 509 PEVSLVAILDADK 521 (655)
T ss_pred CCCcEEEEeCccc
Confidence 9999998887875
No 333
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.55 E-value=0.39 Score=45.17 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
++|++||.|.|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6999999999999654
No 334
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.54 E-value=1 Score=46.82 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=15.7
Q ss_pred cEEEEcCCCCChhHHhhHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpi 232 (465)
-+++++++|+|||.+..-.+
T Consensus 101 vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 57899999999998754433
No 335
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=2.1 Score=45.05 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=34.8
Q ss_pred CceeEEEecchhHhhhcCC-----H-HHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHH
Q 012337 338 HTLSFFVLDEADRMIENGH-----F-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 411 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~-----~-~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 411 (465)
+.+.+||||++.+|+|+.. . ..++.++-.|...|+ +.+++++|..|= ...++
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~pp--------------------kg~kLli~~TTS--~~~vL 654 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPP--------------------KGRKLLIFGTTS--RREVL 654 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCC--------------------CCceEEEEeccc--HHHHH
Confidence 5678999999999998753 1 233444444554443 566777776554 45565
Q ss_pred HHh
Q 012337 412 KKL 414 (465)
Q Consensus 412 ~~l 414 (465)
..+
T Consensus 655 ~~m 657 (744)
T KOG0741|consen 655 QEM 657 (744)
T ss_pred HHc
Confidence 554
No 336
>PTZ00293 thymidine kinase; Provisional
Probab=91.38 E-value=0.81 Score=42.67 Aligned_cols=19 Identities=26% Similarity=0.086 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
|.=.++.||.+||||.-.+
T Consensus 4 G~i~vi~GpMfSGKTteLL 22 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELM 22 (211)
T ss_pred eEEEEEECCCCChHHHHHH
Confidence 5556889999999995433
No 337
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.36 E-value=0.7 Score=49.49 Aligned_cols=19 Identities=26% Similarity=0.148 Sum_probs=15.2
Q ss_pred cEEEEcCCCCChhHHhhHH
Q 012337 213 DIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lp 231 (465)
-+|++||.|+|||....+.
T Consensus 40 a~Lf~Gp~GvGKTTlAr~l 58 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLL 58 (546)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999775543
No 338
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.33 E-value=4.4 Score=43.52 Aligned_cols=146 Identities=16% Similarity=0.164 Sum_probs=89.6
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCc
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINV 291 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~ 291 (465)
+-.++--|---||| .|+.|++..++.. ..+.++.|++--|..+.-|.+++...+...
T Consensus 203 kaTVFLVPRRHGKT-Wf~VpiIsllL~s--------------------~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrw-- 259 (668)
T PHA03372 203 KATVFLVPRRHGKT-WFIIPIISFLLKN--------------------IIGISIGYVAHQKHVSQFVLKEVEFRCRRM-- 259 (668)
T ss_pred cceEEEecccCCce-ehHHHHHHHHHHh--------------------hcCceEEEEeeHHHHHHHHHHHHHHHHhhh--
Confidence 44567778889999 6788888888753 346789999999988888887776544321
Q ss_pred eEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHH--HhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCC
Q 012337 292 RVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL--MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 369 (465)
Q Consensus 292 ~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~--l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~ 369 (465)
+++.... -..+--|.+.-|+.=-.. +...+.....=....+|+|||||-+- .+.+..|+-.|+.
T Consensus 260 -----F~~~~vi-----~~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q 325 (668)
T PHA03372 260 -----FPRKHTI-----ENKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQ 325 (668)
T ss_pred -----cCcccee-----eecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcc
Confidence 1110000 001224666655432111 11111112333567899999999764 4567778877763
Q ss_pred CCCCCCCCcccccchhccccccCCCceEEEEeeeccC--cHHHHHHhhhc
Q 012337 370 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL--SADFRKKLKHG 417 (465)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~--~~~~~~~l~~~ 417 (465)
+...+|..|.|-+. +..|+-+|+..
T Consensus 326 -----------------------~~~KiIfISS~Nsg~~sTSfL~~Lk~~ 352 (668)
T PHA03372 326 -----------------------NTTKIIFISSTNTTNDATCFLTKLNNS 352 (668)
T ss_pred -----------------------cCceEEEEeCCCCCCccchHHHhccCc
Confidence 56788888988642 44677666543
No 339
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.29 E-value=0.28 Score=51.65 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=36.5
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
.++++.||||||||..|++|.+-.. .+ -+||+=|--+|+......+.+.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~------------------------~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY------------------------PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc------------------------cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 4799999999999999999976321 01 3788888888877766666554
No 340
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.22 E-value=0.88 Score=49.43 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.0
Q ss_pred EEEEcCCCCChhHHhhHH
Q 012337 214 IIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~lp 231 (465)
+|++|+.|+|||.+..+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 599999999999876553
No 341
>PTZ00110 helicase; Provisional
Probab=91.13 E-value=0.9 Score=48.90 Aligned_cols=72 Identities=19% Similarity=0.283 Sum_probs=55.1
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH---h-CCCcEEEeChHHHHHHHhCCCccccc
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~---~-~~~dIiV~TP~~L~~~l~~~~~~~~~ 336 (465)
.+.++||.|+|+.-|..++..|.. .++.+..++|+.....+...+ + ....|||||. ++..+ ++
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~rG----ID 442 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VASRG----LD 442 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhhcC----CC
Confidence 456899999999999999888864 367888999999876654333 2 4678999994 44444 77
Q ss_pred cCceeEEEe
Q 012337 337 LHTLSFFVL 345 (465)
Q Consensus 337 l~~i~~lVi 345 (465)
+..|.+||.
T Consensus 443 i~~v~~VI~ 451 (545)
T PTZ00110 443 VKDVKYVIN 451 (545)
T ss_pred cccCCEEEE
Confidence 888988875
No 342
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.12 E-value=0.42 Score=49.87 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=30.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhcCC-cEEEEcCCCCChhHHhhHHHHHHH
Q 012337 188 IYRLGFKEPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 188 l~~~g~~~p~~iQ~~~i~~~l~~~~-dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
+.+.|| ++.|...+..+++..+ =+|+.||||||||.. +..+++.+
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~l 282 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSEL 282 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHh
Confidence 344544 6788888877775444 478899999999966 34455554
No 343
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.10 E-value=0.88 Score=49.42 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=12.9
Q ss_pred cEEEEcCCCCChhHH
Q 012337 213 DIIGAAETGSGKTLA 227 (465)
Q Consensus 213 dvl~~a~TGsGKT~~ 227 (465)
-+++|||.|-|||..
T Consensus 328 ilLL~GppGlGKTTL 342 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTL 342 (877)
T ss_pred eEEeecCCCCChhHH
Confidence 489999999999954
No 344
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.04 E-value=0.61 Score=50.85 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCChhHHhhH
Q 012337 212 KDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~l 230 (465)
+.+|++||.|+|||.+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4679999999999976544
No 345
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.03 E-value=2.9 Score=44.23 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHHHHh---------cCCcEEEEcCCCCChhHHhh-HHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 012337 195 EPTPIQKACIPAAAH---------QGKDIIGAAETGSGKTLAFG-LPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 264 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~---------~~~dvl~~a~TGsGKT~~~~-lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (465)
.+.|+|.-++-.++- ...-.++..|-+-|||.... |.+...++.. ..+-+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--------------------~~~~~ 120 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--------------------RSGAG 120 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--------------------hcCCc
Confidence 678999998877651 11246788888999997644 4333333322 23447
Q ss_pred EEEEcccHHHHHHHHHHHHHHHc
Q 012337 265 ALIITPTRELALQVTDHLKEVAK 287 (465)
Q Consensus 265 vLil~Ptr~La~Qv~~~l~~l~~ 287 (465)
..|++|+.+-+.+.++.++....
T Consensus 121 ~~i~A~s~~qa~~~F~~ar~mv~ 143 (546)
T COG4626 121 IYILAPSVEQAANSFNPARDMVK 143 (546)
T ss_pred EEEEeccHHHHHHhhHHHHHHHH
Confidence 99999999999998888877654
No 346
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.99 E-value=0.73 Score=49.68 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCChhHHhhHH
Q 012337 212 KDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lp 231 (465)
+-+|++||.|+|||..+.+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999765443
No 347
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.99 E-value=1.8 Score=40.94 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|.-+++.|++|+|||...+..+...+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~ 50 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL 50 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 356789999999999976555444433
No 348
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.96 E-value=0.37 Score=49.10 Aligned_cols=27 Identities=30% Similarity=0.182 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLL 237 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~ 237 (465)
.+..++++||||||||.. +..++.++.
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 455789999999999955 345666654
No 349
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.94 E-value=0.87 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.192 Sum_probs=17.7
Q ss_pred CCc-EEEEcCCCCChhHHhhHHHHHHH
Q 012337 211 GKD-IIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 211 ~~d-vl~~a~TGsGKT~~~~lpil~~l 236 (465)
... +++.||.|+|||.++. .+...+
T Consensus 23 ~~halL~~Gp~G~Gktt~a~-~lA~~l 48 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAAL-ALAKEL 48 (325)
T ss_pred CCceeeeeCCCCCCHHHHHH-HHHHHH
Confidence 345 9999999999997643 333444
No 350
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.89 E-value=1 Score=44.44 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...++++||+|+|||...
T Consensus 30 ~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999543
No 351
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.86 E-value=0.21 Score=48.48 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 199 IQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 199 iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
...+.+..++..+.+++++|+||||||... -.++..+
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i 151 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEI 151 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHC
T ss_pred HHHHHHhhccccceEEEEECCCccccchHH-HHHhhhc
Confidence 334445444456889999999999999654 4444444
No 352
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.86 E-value=0.3 Score=52.65 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCChhHHhhHHH
Q 012337 212 KDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpi 232 (465)
+-.|++||.|+|||.++-+.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999997765443
No 353
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.83 E-value=1.7 Score=43.49 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=16.3
Q ss_pred EEEcCCCCChhHHhhHHHHHHHH
Q 012337 215 IGAAETGSGKTLAFGLPIMQRLL 237 (465)
Q Consensus 215 l~~a~TGsGKT~~~~lpil~~l~ 237 (465)
++.++.|+|||.+.++.++.+++
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~ 23 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWAL 23 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHh
Confidence 46788999999998877777764
No 354
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.83 E-value=1.6 Score=41.11 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=18.7
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQ 234 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~ 234 (465)
.|..+++.+++|+|||...+..+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~ 43 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYK 43 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 4678999999999999665443433
No 355
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.76 E-value=1.4 Score=47.64 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=14.7
Q ss_pred cEEEEcCCCCChhHHhhH
Q 012337 213 DIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~l 230 (465)
-.|++||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 358999999999977644
No 356
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.65 E-value=0.5 Score=51.28 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCChhHHhhHH
Q 012337 212 KDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lp 231 (465)
+.+|++||.|+|||.+..+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34699999999999775443
No 357
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.63 E-value=1.6 Score=46.67 Aligned_cols=55 Identities=20% Similarity=0.425 Sum_probs=45.2
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHH
Q 012337 264 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGR 322 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~ 322 (465)
++||.+.|+..|..++..+... |+.+..++|+.......+.+. ...+|+|||.-.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva 333 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA 333 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh
Confidence 6999999999999988777665 799999999999876655443 578999999644
No 358
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.60 E-value=0.21 Score=54.23 Aligned_cols=158 Identities=20% Similarity=0.265 Sum_probs=91.1
Q ss_pred CCcHHHHHHHHHHHh-------cCC--cEEEEcCCCCC--hhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCe
Q 012337 195 EPTPIQKACIPAAAH-------QGK--DIIGAAETGSG--KTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHL 263 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~-------~~~--dvl~~a~TGsG--KT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (465)
.++.+|.+++-.+.. .|. -.|+--..|-| .|.+-+ |++..++ ++.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLk----------------------GRK 319 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLK----------------------GRK 319 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhc----------------------ccc
Confidence 678889888876642 122 24444444554 454433 4454443 345
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHccCCceEEEEe----cCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC-CccccccC
Q 012337 264 RALIITPTRELALQVTDHLKEVAKGINVRVVPIV----GGMSTEKQERLLKARPELVVGTPGRLWELMSGG-EKHLVELH 338 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~----gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~-~~~~~~l~ 338 (465)
++|++.-+..|-....+.|..+.. .++.|..+. +..+.... ...+ --||+||+..|.---... .+....++
T Consensus 320 rAlW~SVSsDLKfDAERDL~DigA-~~I~V~alnK~KYakIss~en-~n~k--rGViFaTYtaLIGEs~~~~~kyrtR~r 395 (1300)
T KOG1513|consen 320 RALWFSVSSDLKFDAERDLRDIGA-TGIAVHALNKFKYAKISSKEN-TNTK--RGVIFATYTALIGESQGKGGKYRTRFR 395 (1300)
T ss_pred eeEEEEeccccccchhhchhhcCC-CCccceehhhccccccccccc-CCcc--ceeEEEeeHhhhhhccccCchHHHHHH
Confidence 899999999998888888887743 345554432 11111111 1112 259999998875433211 11111121
Q ss_pred c---------eeEEEecchhHhhh---c------CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEE
Q 012337 339 T---------LSFFVLDEADRMIE---N------GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 400 (465)
Q Consensus 339 ~---------i~~lViDEah~ll~---~------~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 400 (465)
+ =.+||+||||..-. + -.+..+..+-+.|| ..++|..
T Consensus 396 QllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-------------------------~ARVVYA 450 (1300)
T KOG1513|consen 396 QLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-------------------------NARVVYA 450 (1300)
T ss_pred HHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-------------------------CceEEEe
Confidence 1 25799999998542 1 13566777777776 4578888
Q ss_pred eeecc
Q 012337 401 SATIA 405 (465)
Q Consensus 401 SATl~ 405 (465)
|||=.
T Consensus 451 SATGA 455 (1300)
T KOG1513|consen 451 SATGA 455 (1300)
T ss_pred eccCC
Confidence 98865
No 359
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.58 E-value=0.75 Score=48.46 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=58.0
Q ss_pred CCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCccc
Q 012337 259 PKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHL 334 (465)
Q Consensus 259 ~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~ 334 (465)
.....++||.|-|+.-|.++...+... ++.+.++||+.+.......+. ..+.|||||.- ..++
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV-----AaRG---- 404 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV-----AARG---- 404 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEccc-----cccc----
Confidence 445669999999999999998888764 578999999999987776665 46899999952 2333
Q ss_pred cccCceeEEEe
Q 012337 335 VELHTLSFFVL 345 (465)
Q Consensus 335 ~~l~~i~~lVi 345 (465)
+++..|++||-
T Consensus 405 LDi~dV~lVIn 415 (519)
T KOG0331|consen 405 LDVPDVDLVIN 415 (519)
T ss_pred CCCccccEEEe
Confidence 77788887773
No 360
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.56 E-value=0.66 Score=43.66 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=21.1
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
..-.++|+||||.|- .|-...+...++.-.
T Consensus 112 grhKIiILDEADSMT-~gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 112 GRHKIIILDEADSMT-AGAQQALRRTMEIYS 141 (333)
T ss_pred CceeEEEeeccchhh-hHHHHHHHHHHHHHc
Confidence 455689999999987 566666666655443
No 361
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.53 E-value=1.7 Score=44.22 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=16.9
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRLL 237 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l~ 237 (465)
-+|++||.|+||+.... .+...++
T Consensus 43 A~Lf~Gp~G~GK~~lA~-~~A~~Ll 66 (365)
T PRK07471 43 AWLIGGPQGIGKATLAY-RMARFLL 66 (365)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHh
Confidence 48999999999996543 3344443
No 362
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.52 E-value=0.46 Score=46.76 Aligned_cols=117 Identities=18% Similarity=0.192 Sum_probs=66.4
Q ss_pred HhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH-----------HHH
Q 012337 208 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE-----------LAL 276 (465)
Q Consensus 208 l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~-----------La~ 276 (465)
+..++=+++.||+|+|||. .|-.+.+++--+ -.+..+-..||=..... |+.
T Consensus 174 It~NRliLlhGPPGTGKTS-LCKaLaQkLSIR-----------------~~~~y~~~~liEinshsLFSKWFsESgKlV~ 235 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTS-LCKALAQKLSIR-----------------TNDRYYKGQLIEINSHSLFSKWFSESGKLVA 235 (423)
T ss_pred eeeeeEEEEeCCCCCChhH-HHHHHHHhheee-----------------ecCccccceEEEEehhHHHHHHHhhhhhHHH
Confidence 3456678999999999994 455555655211 11111222344444333 677
Q ss_pred HHHHHHHHHHccCCceEEEEecCCCH------------------------HHHHHHHhCCCcEEEeChHHHHHHHhCCCc
Q 012337 277 QVTDHLKEVAKGINVRVVPIVGGMST------------------------EKQERLLKARPELVVGTPGRLWELMSGGEK 332 (465)
Q Consensus 277 Qv~~~l~~l~~~~~~~v~~~~gg~~~------------------------~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~ 332 (465)
++++.+.++..-.+.-|++++..... --|...++..++++|-|...|.+-|
T Consensus 236 kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~si----- 310 (423)
T KOG0744|consen 236 KMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSI----- 310 (423)
T ss_pred HHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHH-----
Confidence 77777777777666666665543211 1233445556777766665554444
Q ss_pred cccccCceeEEEecchhHhhhcC
Q 012337 333 HLVELHTLSFFVLDEADRMIENG 355 (465)
Q Consensus 333 ~~~~l~~i~~lViDEah~ll~~~ 355 (465)
+.-.||-||-....|
T Consensus 311 --------D~AfVDRADi~~yVG 325 (423)
T KOG0744|consen 311 --------DVAFVDRADIVFYVG 325 (423)
T ss_pred --------HHHhhhHhhheeecC
Confidence 345678888554444
No 363
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.50 E-value=1.5 Score=41.56 Aligned_cols=27 Identities=30% Similarity=0.021 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|.-++++|++|+|||...+-.+++.+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~ 38 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA 38 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567789999999999955443344333
No 364
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.50 E-value=6.8 Score=35.98 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=21.9
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
....+++..++|.|||.+.+--++..+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~ 47 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV 47 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH
Confidence 456899999999999998777666665
No 365
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.42 E-value=1.1 Score=47.10 Aligned_cols=71 Identities=24% Similarity=0.362 Sum_probs=53.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH---h-CCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~---~-~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
..++||.++|+.-|..++..|... ++.+..++|+.+.......+ + ...+|||||. ++..+ +++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~rG----iDi 311 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAARG----LDI 311 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHhcC----CCc
Confidence 457999999999999988888653 78899999999876554433 2 4679999994 44444 778
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
..+.+||.
T Consensus 312 p~v~~VI~ 319 (456)
T PRK10590 312 EELPHVVN 319 (456)
T ss_pred ccCCEEEE
Confidence 88887763
No 366
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.41 E-value=0.52 Score=50.90 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.4
Q ss_pred EEEEcCCCCChhHHhhHHH
Q 012337 214 IIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~lpi 232 (465)
+|++||.|+|||.+..+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998765533
No 367
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.32 E-value=3 Score=41.58 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=29.9
Q ss_pred CCCCcHHHHHHHHHHHh---cCC---cEEEEcCCCCChhHHhhHHHHHHHH
Q 012337 193 FKEPTPIQKACIPAAAH---QGK---DIIGAAETGSGKTLAFGLPIMQRLL 237 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~---~~~---dvl~~a~TGsGKT~~~~lpil~~l~ 237 (465)
+..++|+|..++..+.. +++ -+++.||.|.||+..+. .+...++
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~lA~~Ll 51 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL-ALAEHVL 51 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHh
Confidence 34678999888876542 333 48999999999986543 3344443
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.22 E-value=1.4 Score=45.58 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=44.1
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc--ccHHHHHHHHHHHHHHHccCC
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT--PTRELALQVTDHLKEVAKGIN 290 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~--Ptr~La~Qv~~~l~~l~~~~~ 290 (465)
-++++|++|+|||.+..-.+. ++ ..+ +.++++++ |.|..|.++.. .++...+
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l-~~~---------------------G~kV~lV~~D~~R~aA~eQLk---~~a~~~~ 155 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YY-QRK---------------------GFKPCLVCADTFRAGAFDQLK---QNATKAR 155 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HH-HHC---------------------CCCEEEEcCcccchhHHHHHH---HHhhccC
Confidence 578999999999976543332 22 211 22444443 34554544433 3344456
Q ss_pred ceEEEEecCCCHHH----HHHHHh-CCCc-EEEeChHHH
Q 012337 291 VRVVPIVGGMSTEK----QERLLK-ARPE-LVVGTPGRL 323 (465)
Q Consensus 291 ~~v~~~~gg~~~~~----~~~~~~-~~~d-IiV~TP~~L 323 (465)
+.+.....+.+... ....++ .++| |||=|||++
T Consensus 156 vp~~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 156 IPFYGSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred CeEEeecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 66655444433211 111122 2444 788899987
No 369
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=90.21 E-value=0.86 Score=47.52 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=61.0
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCccccc
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~~~ 336 (465)
..|.+||.+.|+.-|.-+++.|.+. +++++.++||.+.......+. +..+|+|||.-. ..| ++
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvA-----gRG----ID 582 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVA-----GRG----ID 582 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEeccc-----ccC----CC
Confidence 4567899999998888777777765 799999999999876655443 367999999632 232 67
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 369 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~ 369 (465)
..++++|| ...+...+...+.++-.
T Consensus 583 IpnVSlVi--------nydmaksieDYtHRIGR 607 (673)
T KOG0333|consen 583 IPNVSLVI--------NYDMAKSIEDYTHRIGR 607 (673)
T ss_pred CCccceee--------ecchhhhHHHHHHHhcc
Confidence 78887665 23344455555555543
No 370
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.16 E-value=1.1 Score=51.17 Aligned_cols=93 Identities=14% Similarity=0.280 Sum_probs=74.9
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.+|.||.|-.+-..+++..++.+.. ..++++.||.+........+ .+..||+|||. ++.+| +++
T Consensus 803 gGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEtG----IDI 871 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIETG----IDI 871 (1139)
T ss_pred CCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeecC----cCC
Confidence 56899999999999999999999854 67899999999987655443 46899999995 66766 889
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLPM 369 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~ 369 (465)
.+...|||+-||++. ..++.++..+.-+
T Consensus 872 PnANTiIIe~AD~fG----LsQLyQLRGRVGR 899 (1139)
T COG1197 872 PNANTIIIERADKFG----LAQLYQLRGRVGR 899 (1139)
T ss_pred CCCceEEEecccccc----HHHHHHhccccCC
Confidence 999999999999764 4566667666553
No 371
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.11 E-value=1.5 Score=48.97 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
..++|+.||+|+|||...
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999764
No 372
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.07 E-value=0.61 Score=49.91 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=14.8
Q ss_pred cEEEEcCCCCChhHHhhH
Q 012337 213 DIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~l 230 (465)
-+|++||.|+|||.+..+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999977554
No 373
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.06 E-value=3.4 Score=37.56 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=19.1
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.....++||||+|.|-. .....++..|.
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le 121 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLE 121 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhc
Confidence 45678999999999863 23444555554
No 374
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=89.96 E-value=1.6 Score=38.84 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=20.1
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
...+++|||+||.|- ......+..+++.=+
T Consensus 101 ~~~KviiI~~ad~l~-~~a~NaLLK~LEepp 130 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT-EEAQNALLKTLEEPP 130 (162)
T ss_dssp SSSEEEEEETGGGS--HHHHHHHHHHHHSTT
T ss_pred CCceEEEeehHhhhh-HHHHHHHHHHhcCCC
Confidence 568899999999886 334555555555433
No 375
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.87 E-value=0.48 Score=51.33 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCC
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 290 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~ 290 (465)
..++++.||||||||..|++|-|-.. +.-+||+=|--|+........+++ |
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~-------------------------~~S~VV~DpKGEl~~~Ta~~R~~~----G 208 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW-------------------------EDSVVVHDIKLENYELTSGWREKQ----G 208 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC-------------------------CCCEEEEeCcHHHHHHHHHHHHHC----C
Confidence 45799999999999999999987543 113788888888876666655543 4
Q ss_pred ceEEEE
Q 012337 291 VRVVPI 296 (465)
Q Consensus 291 ~~v~~~ 296 (465)
.+|.++
T Consensus 209 ~~V~vf 214 (606)
T PRK13897 209 QKVFVW 214 (606)
T ss_pred CeEEEE
Confidence 455444
No 376
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.87 E-value=3.4 Score=40.67 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.|++|+|||.+.
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999654
No 377
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=89.77 E-value=1.2 Score=45.86 Aligned_cols=18 Identities=33% Similarity=0.409 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
.+.++++||+|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 457999999999999653
No 378
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.74 E-value=1.4 Score=46.54 Aligned_cols=72 Identities=18% Similarity=0.297 Sum_probs=53.6
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+..+||.++|+..|.+++..|... ++.+..++|+.+.......+ .+..+|||||. .+..| +++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~-----~~~~G----ID~ 292 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV-----AFGMG----INK 292 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec-----hhhcc----CCc
Confidence 446799999999999999988764 78899999999876554332 35789999995 23333 666
Q ss_pred CceeEEEec
Q 012337 338 HTLSFFVLD 346 (465)
Q Consensus 338 ~~i~~lViD 346 (465)
..+++||.-
T Consensus 293 p~V~~VI~~ 301 (470)
T TIGR00614 293 PDVRFVIHY 301 (470)
T ss_pred ccceEEEEe
Confidence 777777754
No 379
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.73 E-value=0.57 Score=45.43 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=29.1
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 188 IYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 188 l~~~g~~~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
+..+|+ ++-|.+.|..++.. +..++++|+||||||... ..++..+
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 445554 45666666555543 346899999999999653 3344544
No 380
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=89.71 E-value=6.7 Score=39.16 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=27.6
Q ss_pred HHHHHHhCCCccccccCce-eEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 322 RLWELMSGGEKHLVELHTL-SFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 322 ~L~~~l~~~~~~~~~l~~i-~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.|+..+..++ ..++. -++|+||.|....+.+...+..+++.-.
T Consensus 123 ~lL~~L~~~~----~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq 166 (408)
T KOG2228|consen 123 KLLEALKKGD----ETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHhcCC----CCCCceEEEEeehhhccccchhhHHHHHHHHHHh
Confidence 4555665432 23333 4789999997766667777777776543
No 381
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.60 E-value=1.5 Score=46.58 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHhhH
Q 012337 213 DIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~l 230 (465)
-+|++||.|+|||.+..+
T Consensus 38 a~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 359999999999987543
No 382
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=89.59 E-value=3.8 Score=44.86 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI- 289 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~- 289 (465)
|--+|+.-..|-|||+..+-.+ .-+++. .....||+|+|-..| +-+..+|..+.-..
T Consensus 282 GFGCILAHSMGLGKTlQVisF~-diflRh--------------------T~AKtVL~ivPiNTl-QNWlsEfnmWiP~y~ 339 (1387)
T KOG1016|consen 282 GFGCILAHSMGLGKTLQVISFS-DIFLRH--------------------TKAKTVLVIVPINTL-QNWLSEFNMWIPKYF 339 (1387)
T ss_pred CcceeeeeccccCceeEEeehh-HHHhhc--------------------CccceEEEEEehHHH-HHHHHHhhhhcCCCc
Confidence 3446666778999998744322 222211 112369999997776 45666666554331
Q ss_pred --------CceEEEEecCCCHHHHHHH----HhCCCcEEEeChHHHHHHH
Q 012337 290 --------NVRVVPIVGGMSTEKQERL----LKARPELVVGTPGRLWELM 327 (465)
Q Consensus 290 --------~~~v~~~~gg~~~~~~~~~----~~~~~dIiV~TP~~L~~~l 327 (465)
.+.|.++..+...-.+... +-...-|++.-++.++-++
T Consensus 340 sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~ 389 (1387)
T KOG1016|consen 340 SDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLI 389 (1387)
T ss_pred ccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHH
Confidence 3566666666554333222 2233457777777654443
No 383
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.57 E-value=1.5 Score=41.20 Aligned_cols=51 Identities=25% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
|.-+++.|++|+|||...+..+.+.+. .+-+++|++-. +-..++.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~-----------------------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK-----------------------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----------------------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 567899999999999654433443331 12257777553 4456777666554
No 384
>PRK06904 replicative DNA helicase; Validated
Probab=89.48 E-value=2.5 Score=44.58 Aligned_cols=132 Identities=21% Similarity=0.238 Sum_probs=65.0
Q ss_pred HhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHc
Q 012337 208 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAK 287 (465)
Q Consensus 208 l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~ 287 (465)
+..|.=+|+.|.||.|||. |.+-++.++... .+..|+|++. -.-..|+..++.....
T Consensus 218 l~~G~LiiIaarPg~GKTa-falnia~~~a~~---------------------~g~~Vl~fSl-EMs~~ql~~Rlla~~s 274 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTT-FAMNLCENAAMA---------------------SEKPVLVFSL-EMPAEQIMMRMLASLS 274 (472)
T ss_pred cCCCcEEEEEeCCCCChHH-HHHHHHHHHHHh---------------------cCCeEEEEec-cCCHHHHHHHHHHhhC
Confidence 3455667889999999996 444444443211 1224666543 2345566666554433
Q ss_pred cCCceEEEE-ec-CCCHHHH------HHHHhCCCcEEEe-----ChHHHHHHHhCCCccccccCceeEEEecchhHhhhc
Q 012337 288 GINVRVVPI-VG-GMSTEKQ------ERLLKARPELVVG-----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354 (465)
Q Consensus 288 ~~~~~v~~~-~g-g~~~~~~------~~~~~~~~dIiV~-----TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~ 354 (465)
.... ..+ .| ..+.... ...+...+.+.|- |+..|...+..- ......+.+||||-.+.|...
T Consensus 275 ~v~~--~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~---~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 275 RVDQ--TKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRV---YRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred CCCH--HHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH---HHhCCCCCEEEEecHHhcCCC
Confidence 2222 112 23 2333221 1123234446552 444554433211 011235889999999877533
Q ss_pred C----CHHHHHHHHHhC
Q 012337 355 G----HFRELQSIIDML 367 (465)
Q Consensus 355 ~----~~~~l~~i~~~l 367 (465)
+ ....+..|...|
T Consensus 350 ~~~~~r~~ei~~isr~L 366 (472)
T PRK06904 350 GFEDNRTLEIAEISRSL 366 (472)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 2 233455554444
No 385
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=89.44 E-value=1.3 Score=46.55 Aligned_cols=71 Identities=14% Similarity=0.294 Sum_probs=53.1
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
.++||.|+|+.-|..++..|... ++.+..++|+.+...+...+. +..+|+|||- .+..| +++.
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~rG----iDi~ 309 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAARG----LDIK 309 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccccc----cchh
Confidence 36999999999999999888764 788999999998766544332 4578999994 33333 6677
Q ss_pred ceeEEEec
Q 012337 339 TLSFFVLD 346 (465)
Q Consensus 339 ~i~~lViD 346 (465)
.+.+||.-
T Consensus 310 ~v~~VI~~ 317 (460)
T PRK11776 310 ALEAVINY 317 (460)
T ss_pred cCCeEEEe
Confidence 77776643
No 386
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.41 E-value=2 Score=41.45 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQ 234 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~ 234 (465)
.|.-+++.|++|+|||...+..+.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667899999999999654444443
No 387
>PF14516 AAA_35: AAA-like domain
Probab=89.32 E-value=6.2 Score=39.56 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 197 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|+.+.++..+...|.-+.+.||-.+|||.. +.-+++++
T Consensus 17 ~~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l 55 (331)
T PF14516_consen 17 PPAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERL 55 (331)
T ss_pred hHHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHH
Confidence 3588899988865599999999999999954 44445544
No 388
>PRK10436 hypothetical protein; Provisional
Probab=89.26 E-value=0.73 Score=48.39 Aligned_cols=45 Identities=36% Similarity=0.438 Sum_probs=28.8
Q ss_pred HHHCCCCCCcHHHHHHHHHHHh-cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 188 IYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 188 l~~~g~~~p~~iQ~~~i~~~l~-~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
|..+|+ .+-|...|..++. .+.-+|++||||||||... ..++..+
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 344554 4556666655543 3456899999999999763 3455554
No 389
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=89.23 E-value=0.69 Score=54.17 Aligned_cols=63 Identities=24% Similarity=0.407 Sum_probs=46.7
Q ss_pred HHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 206 AAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 206 ~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
.+...+.+++|.|..|||||.+-..-++..++... +....++|||+.|+..+..+..++..-
T Consensus 11 ~~~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~------------------~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 11 LASPPGQSVLVEASAGTGKTFVLAERVLRLLLEGG------------------PLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred hhcCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcC------------------CCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 33456889999999999999997777777765420 233457999999999888777666554
Q ss_pred H
Q 012337 286 A 286 (465)
Q Consensus 286 ~ 286 (465)
.
T Consensus 73 L 73 (1139)
T COG1074 73 L 73 (1139)
T ss_pred H
Confidence 3
No 390
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.16 E-value=0.72 Score=42.87 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCChhHH
Q 012337 211 GKDIIGAAETGSGKTLA 227 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~ 227 (465)
++.+++.||-|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 46889999999999963
No 391
>PF12846 AAA_10: AAA-like domain
Probab=89.15 E-value=1.1 Score=43.47 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=29.3
Q ss_pred CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHH
Q 012337 212 KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~ 276 (465)
.++++.|+||||||.... .++..++.. ++.++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~----------------------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR----------------------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc----------------------CCCEEEEcCCchHHH
Confidence 578999999999997766 444444322 356888877766544
No 392
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=89.09 E-value=0.56 Score=46.58 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=20.0
Q ss_pred HHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
+..++..+.+++++|+||||||...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHH
Confidence 4445567899999999999999653
No 393
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.97 E-value=3 Score=46.22 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=35.6
Q ss_pred eeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 340 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 340 i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
--+||||..|.+-+.-....+..+++++| .+.+.|+.|=+-|
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P------------------------~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAP------------------------ENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCC------------------------CCeEEEEEeccCC
Confidence 35999999999998878889999999998 6788888877665
No 394
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.95 E-value=2.5 Score=43.14 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCChhHHhhHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpi 232 (465)
.|.-+++.+++|+|||...+..+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a 103 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVA 103 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 35678999999999996644433
No 395
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.88 E-value=1 Score=49.64 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.2
Q ss_pred cEEEEcCCCCChhHHhhHH
Q 012337 213 DIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lp 231 (465)
-.|++||.|+|||.++.+.
T Consensus 42 AYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 3689999999999776443
No 396
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=88.84 E-value=1.3 Score=48.59 Aligned_cols=70 Identities=21% Similarity=0.391 Sum_probs=52.6
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
.++||.|+|+.-|.+++..|... ++.+..++|+.+.......+ ....+|||||. ++..+ +++.
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~arG----IDip 312 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAARG----LDVE 312 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHhcC----CCcc
Confidence 46999999999999999888764 78899999999876654433 24689999994 34443 5667
Q ss_pred ceeEEEe
Q 012337 339 TLSFFVL 345 (465)
Q Consensus 339 ~i~~lVi 345 (465)
.+.+||.
T Consensus 313 ~V~~VI~ 319 (629)
T PRK11634 313 RISLVVN 319 (629)
T ss_pred cCCEEEE
Confidence 7777664
No 397
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.84 E-value=0.22 Score=45.00 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=28.8
Q ss_pred HHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhc
Q 012337 306 ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354 (465)
Q Consensus 306 ~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~ 354 (465)
.+.....+||||++..-|++-..........+ .-.+|||||||.|.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGGG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHHH
Confidence 34455678999999988765332111001223 3368999999998753
No 398
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.83 E-value=1.4 Score=48.11 Aligned_cols=19 Identities=32% Similarity=0.186 Sum_probs=15.6
Q ss_pred cEEEEcCCCCChhHHhhHH
Q 012337 213 DIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lp 231 (465)
.+|++||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4889999999999876543
No 399
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=88.81 E-value=4 Score=36.71 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=28.2
Q ss_pred EEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 012337 214 IIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 284 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~ 284 (465)
+++.|++|||||....-.+.. .+.+++|++-.+.+-..+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~--------------------------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE--------------------------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh--------------------------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 578999999999653322211 123688887776665555555544
No 400
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=88.70 E-value=2 Score=45.03 Aligned_cols=89 Identities=26% Similarity=0.477 Sum_probs=66.1
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+-|+||.+=|+-+|....+.+..+ |+++.+++++...-+....++ +..||+|| .++|..| +++
T Consensus 446 ~eRvLVTtLTKkmAEdLT~Yl~e~----gikv~YlHSdidTlER~eIirdLR~G~~DvLVG-----INLLREG----LDi 512 (663)
T COG0556 446 NERVLVTTLTKKMAEDLTEYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG-----INLLREG----LDL 512 (663)
T ss_pred CCeEEEEeehHHHHHHHHHHHHhc----CceEEeeeccchHHHHHHHHHHHhcCCccEEEe-----ehhhhcc----CCC
Confidence 358999999998888877777665 899999999998765544333 46899999 5677766 889
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHh
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDM 366 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~ 366 (465)
..+++|.|=.||. .||...-..++..
T Consensus 513 PEVsLVAIlDADK---eGFLRse~SLIQt 538 (663)
T COG0556 513 PEVSLVAILDADK---EGFLRSERSLIQT 538 (663)
T ss_pred cceeEEEEeecCc---cccccccchHHHH
Confidence 9999997777994 5665444444433
No 401
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.68 E-value=0.79 Score=49.52 Aligned_cols=45 Identities=38% Similarity=0.525 Sum_probs=30.0
Q ss_pred HHHCCCCCCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 188 IYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 188 l~~~g~~~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
+..+|| .+-|.+.|..++.. ..-++++||||||||.+. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 456665 46666666665542 346889999999999763 4455555
No 402
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.53 E-value=0.7 Score=48.89 Aligned_cols=46 Identities=26% Similarity=0.361 Sum_probs=30.0
Q ss_pred HHHHCCCCCCcHHHHHHHHHHHhcCC-cEEEEcCCCCChhHHhhHHHHHHH
Q 012337 187 SIYRLGFKEPTPIQKACIPAAAHQGK-DIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 187 ~l~~~g~~~p~~iQ~~~i~~~l~~~~-dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|..+|| ++-|.+.+..++...+ -++++||||||||... ..++..+
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3445655 5667777766665444 4789999999999763 3345544
No 403
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.53 E-value=1.8 Score=46.31 Aligned_cols=29 Identities=17% Similarity=0.449 Sum_probs=18.6
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHh
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDM 366 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~ 366 (465)
....+++||||||.|- ..-...+..+++.
T Consensus 115 ~~~~KVvIIDEad~Lt-~~A~NALLK~LEE 143 (535)
T PRK08451 115 MARFKIFIIDEVHMLT-KEAFNALLKTLEE 143 (535)
T ss_pred cCCeEEEEEECcccCC-HHHHHHHHHHHhh
Confidence 4577899999999885 3333444444433
No 404
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=88.50 E-value=2.1 Score=42.87 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHhcC----CcEEEEcCCCCChhHHhhH
Q 012337 197 TPIQKACIPAAAHQG----KDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~~----~dvl~~a~TGsGKT~~~~l 230 (465)
+|+|...|..+.... +-+|++||.|.|||..+..
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 577877777765321 2589999999999966443
No 405
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.42 E-value=1.9 Score=45.43 Aligned_cols=72 Identities=13% Similarity=0.295 Sum_probs=54.5
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
..++||.++++.-|..++..|... ++.+..++|+.....+...+ .+...|||||. ++..| +++
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l~~G----IDi 401 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VAGRG----IHI 401 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccccC----Ccc
Confidence 358999999999998888777553 67888999998876654333 24679999993 44444 778
Q ss_pred CceeEEEec
Q 012337 338 HTLSFFVLD 346 (465)
Q Consensus 338 ~~i~~lViD 346 (465)
..+.+||.-
T Consensus 402 ~~v~~VI~~ 410 (475)
T PRK01297 402 DGISHVINF 410 (475)
T ss_pred cCCCEEEEe
Confidence 899888863
No 406
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=88.37 E-value=1.1 Score=41.58 Aligned_cols=33 Identities=42% Similarity=0.707 Sum_probs=28.4
Q ss_pred CCCcEEEeChHHHHHHHhCCCccccccCceeEEEec
Q 012337 311 ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 346 (465)
Q Consensus 311 ~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViD 346 (465)
+...+-||||+|+..++..+. +.++.+.++|+|
T Consensus 195 ~~v~~gIgTp~Ri~~lv~~~~---f~~~~lk~iIlD 227 (271)
T KOG3089|consen 195 RVVHLGIGTPGRIKELVKQGG---FNLSPLKFIILD 227 (271)
T ss_pred cceeEeecCcHHHHHHHHhcC---CCCCcceeEEee
Confidence 346889999999999997764 788999999998
No 407
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=88.36 E-value=1.7 Score=46.44 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=55.1
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
.+++||.++|+.-|..+.+.+... .++.+..++|+.+...+...+ .+...|||||. .+..| +++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~rG----iDi 434 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV---TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLGRG----VDL 434 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc---cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhhcc----CCc
Confidence 467999999999988888777543 378899999999876654443 34679999996 44544 778
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
.++.+||.
T Consensus 435 p~v~~VI~ 442 (518)
T PLN00206 435 LRVRQVII 442 (518)
T ss_pred ccCCEEEE
Confidence 89988885
No 408
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.36 E-value=1.1 Score=44.77 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
...+++.||+|+|||....
T Consensus 51 ~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 3579999999999996644
No 409
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=88.31 E-value=5.8 Score=35.29 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=22.9
Q ss_pred cCceeEEEecchhHhhhcCC--HHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGH--FRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~--~~~l~~i~~~l~ 368 (465)
...+++|||||+-..+..++ .+.+..+++..+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp 126 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP 126 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC
Confidence 45789999999998887775 455555555443
No 410
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.26 E-value=0.79 Score=45.66 Aligned_cols=26 Identities=23% Similarity=0.089 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|.-+.+.+|+|||||...+ +++...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL-~~~~~~ 79 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLAL-HAIAEA 79 (321)
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHHHH
Confidence 45678899999999996544 444333
No 411
>PRK05973 replicative DNA helicase; Provisional
Probab=88.17 E-value=0.91 Score=43.24 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=33.7
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
..|.-+++.|++|+|||...+..+.+.+. .+-+++|++- -+-..|+.+.+..+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-----------------------~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMK-----------------------SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHh-----------------------cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 35778899999999999665444444331 1235777753 22346777777655
No 412
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.16 E-value=0.77 Score=46.58 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=19.5
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.+.-++++||||||||... -.++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5678999999999999653 3355544
No 413
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.07 E-value=1.7 Score=43.64 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCC--cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHH
Q 012337 201 KACIPAAAHQGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQV 278 (465)
Q Consensus 201 ~~~i~~~l~~~~--dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv 278 (465)
.-.+..++.+++ .+|+++|.|+|||..+-+.+-. .....-+.|-+.-|.+-...+
T Consensus 150 ~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~t-----------------------sk~~SyrfvelSAt~a~t~dv 206 (554)
T KOG2028|consen 150 DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAST-----------------------SKKHSYRFVELSATNAKTNDV 206 (554)
T ss_pred chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhh-----------------------cCCCceEEEEEeccccchHHH
Confidence 334445555554 7999999999999654332211 112224566677777666666
Q ss_pred HHHHHH
Q 012337 279 TDHLKE 284 (465)
Q Consensus 279 ~~~l~~ 284 (465)
.+.|.+
T Consensus 207 R~ife~ 212 (554)
T KOG2028|consen 207 RDIFEQ 212 (554)
T ss_pred HHHHHH
Confidence 655544
No 414
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.04 E-value=4.3 Score=43.52 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=31.0
Q ss_pred ccccccCCCCHHHHHHHHH---CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 172 FDAWNELRLHPLLMKSIYR---LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~---~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
-.+|.+.|--..+...|.. ..+++|.-++.-.+ .-..-||+|||.|+|||+.+
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi----~~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI----DAPSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC----CCCCceEEeCCCCccHHHHH
Confidence 4678887765555544432 22333333332222 12456999999999999653
No 415
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.92 E-value=0.46 Score=46.30 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCcEEEEcCCCCChhHH
Q 012337 202 ACIPAAAHQGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 202 ~~i~~~l~~~~dvl~~a~TGsGKT~~ 227 (465)
..+..++.+++.++++||+|+|||..
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHH
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHH
Confidence 44555667899999999999999965
No 416
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=87.76 E-value=4.6 Score=40.56 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+|+.||.|+|||...
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999654
No 417
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=87.75 E-value=1.6 Score=43.94 Aligned_cols=40 Identities=18% Similarity=0.064 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHHHhc-C---CcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 196 PTPIQKACIPAAAHQ-G---KDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 196 p~~iQ~~~i~~~l~~-~---~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
++|+|...+..+... + +-+++.||.|.||+..+.. +...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~-~A~~L 45 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQH-LAQGL 45 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHH-HHHHH
Confidence 357787777776532 2 3578999999999976533 33444
No 418
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=87.73 E-value=1.5 Score=45.64 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIM 233 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil 233 (465)
..|.=+++.|++|+|||... +-+.
T Consensus 192 ~~g~liviag~pg~GKT~~a-l~ia 215 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLA-LNIA 215 (421)
T ss_pred CCCceEEEEeCCCCCHHHHH-HHHH
Confidence 45667899999999999544 4444
No 419
>PRK08006 replicative DNA helicase; Provisional
Probab=87.73 E-value=4 Score=43.10 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=63.4
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHcc
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 288 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~ 288 (465)
+.|.=+++.|.+|.|||. |.+-+..++... .+..|+|++.- .-..|+..++......
T Consensus 222 ~~G~LiiIaarPgmGKTa-falnia~~~a~~---------------------~g~~V~~fSlE-M~~~ql~~Rlla~~~~ 278 (471)
T PRK08006 222 QPSDLIIVAARPSMGKTT-FAMNLCENAAML---------------------QDKPVLIFSLE-MPGEQIMMRMLASLSR 278 (471)
T ss_pred CCCcEEEEEeCCCCCHHH-HHHHHHHHHHHh---------------------cCCeEEEEecc-CCHHHHHHHHHHHhcC
Confidence 345567889999999994 444444443211 12246666432 2345566555443322
Q ss_pred CCceEEEE-ecCCCHHHHHH------HHhCCCcEEEe-----ChHHHHHHHhCCCccccccCceeEEEecchhHhhhc--
Q 012337 289 INVRVVPI-VGGMSTEKQER------LLKARPELVVG-----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN-- 354 (465)
Q Consensus 289 ~~~~v~~~-~gg~~~~~~~~------~~~~~~dIiV~-----TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~-- 354 (465)
+ ....+ .|..+.....+ .+.....+.|- |+.-+...+..- ......+.+||||=.+.|...
T Consensus 279 v--~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~---~~~~~~~~lvvIDYLqli~~~~~ 353 (471)
T PRK08006 279 V--DQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRI---FREHGGLSLIMIDYLQLMRVPSL 353 (471)
T ss_pred C--CHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH---HHhcCCCCEEEEccHHHccCCCC
Confidence 2 22112 23334332211 12123445553 444444433211 011236899999999977422
Q ss_pred --CCHHHHHHHHHhCC
Q 012337 355 --GHFRELQSIIDMLP 368 (465)
Q Consensus 355 --~~~~~l~~i~~~l~ 368 (465)
.....+..|...|.
T Consensus 354 ~~~r~~ei~~isr~LK 369 (471)
T PRK08006 354 SDNRTLEIAEISRSLK 369 (471)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 12344555554443
No 420
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.57 E-value=1.9 Score=48.91 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=19.5
Q ss_pred ceeEEEecchhHhhhcCCHHHHHHHHHhC
Q 012337 339 TLSFFVLDEADRMIENGHFRELQSIIDML 367 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~~~~l~~i~~~l 367 (465)
..++|+|||++.+- ...+..+..+++.-
T Consensus 668 p~svvllDEieka~-~~v~~~Llq~ld~g 695 (852)
T TIGR03345 668 PYSVVLLDEVEKAH-PDVLELFYQVFDKG 695 (852)
T ss_pred CCcEEEEechhhcC-HHHHHHHHHHhhcc
Confidence 45789999999765 45566666666543
No 421
>CHL00176 ftsH cell division protein; Validated
Probab=87.53 E-value=1.8 Score=47.42 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
.+.+|+.||+|+|||+..
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346999999999999764
No 422
>PTZ00424 helicase 45; Provisional
Probab=87.45 E-value=2.1 Score=43.82 Aligned_cols=71 Identities=18% Similarity=0.353 Sum_probs=53.8
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
..++||.++|+.-|..++..+... ++.+..++|+.+...+...+ .+..+|||||. .+..| +++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~~G----iDi 333 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLARG----IDV 333 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----cccCC----cCc
Confidence 357999999999988888877653 77899999999876654432 24689999994 44444 778
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
..+.+||.
T Consensus 334 p~v~~VI~ 341 (401)
T PTZ00424 334 QQVSLVIN 341 (401)
T ss_pred ccCCEEEE
Confidence 88888875
No 423
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.45 E-value=0.9 Score=46.12 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCChhHH
Q 012337 211 GKDIIGAAETGSGKTLA 227 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~ 227 (465)
.+|+++.+|+|+|||+.
T Consensus 384 fRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMF 400 (630)
T ss_pred hhheeeeCCCCCCchHH
Confidence 46899999999999965
No 424
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=87.34 E-value=2.7 Score=40.38 Aligned_cols=130 Identities=19% Similarity=0.145 Sum_probs=62.6
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 289 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~ 289 (465)
.|.=+++.|+||.|||...+-.+++... . .+..|+|++.-- -..++..++......+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~-~---------------------~~~~vly~SlEm-~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAAL-N---------------------GGYPVLYFSLEM-SEEELAARLLARLSGV 74 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHH-T---------------------TSSEEEEEESSS--HHHHHHHHHHHHHTS
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHH-h---------------------cCCeEEEEcCCC-CHHHHHHHHHHHhhcc
Confidence 3556788999999999554444444332 1 124688887521 1223333333322222
Q ss_pred CceEEEEecC-CCHHHHH------HHHhCCCcEEEeC----hHHHHHHHhCCCccccccCceeEEEecchhHhhhc----
Q 012337 290 NVRVVPIVGG-MSTEKQE------RLLKARPELVVGT----PGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN---- 354 (465)
Q Consensus 290 ~~~v~~~~gg-~~~~~~~------~~~~~~~dIiV~T----P~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~---- 354 (465)
.. ..+..+ ....... ..+....-.+..+ +..|...+..- ......+.+||||-.|.|-..
T Consensus 75 ~~--~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~---~~~~~~~~~v~IDyl~ll~~~~~~~ 149 (259)
T PF03796_consen 75 PY--NKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRL---KREGKKVDVVFIDYLQLLKSEDSSD 149 (259)
T ss_dssp TH--HHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHH---HHHSTTEEEEEEEEGGGSBTSCSSS
T ss_pred hh--hhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHH---HhhccCCCEEEechHHHhcCCCCCC
Confidence 21 111112 2222111 1222222233343 34555554321 122378899999999987642
Q ss_pred CCHHHHHHHHHhC
Q 012337 355 GHFRELQSIIDML 367 (465)
Q Consensus 355 ~~~~~l~~i~~~l 367 (465)
+.+..+..+...|
T Consensus 150 ~~~~~~~~i~~~L 162 (259)
T PF03796_consen 150 NRRQEIGEISREL 162 (259)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3456666665444
No 425
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=87.22 E-value=6.1 Score=40.16 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=20.0
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
....+|++||.|. -|.+..--|..++..|-
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~ 155 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALF 155 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHH
Confidence 4566899999883 34555555666666654
No 426
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.08 E-value=2.5 Score=45.55 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=15.0
Q ss_pred cEEEEcCCCCChhHHhhH
Q 012337 213 DIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~l 230 (465)
-+|++||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999977554
No 427
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.07 E-value=0.85 Score=50.06 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQR 235 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~ 235 (465)
..++++.||||||||..|++|-|-.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~ 163 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLT 163 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhc
Confidence 3489999999999999999997643
No 428
>PRK06321 replicative DNA helicase; Provisional
Probab=86.98 E-value=1.5 Score=46.31 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|.=+++.|++|.|||. |++-+..++
T Consensus 225 ~G~LiiiaarPgmGKTa-fal~ia~~~ 250 (472)
T PRK06321 225 PSNLMILAARPAMGKTA-LALNIAENF 250 (472)
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHH
Confidence 34456889999999994 455555554
No 429
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=1.1 Score=47.07 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=29.7
Q ss_pred ccccccccCCC---CHHH----HHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 170 TEFDAWNELRL---HPLL----MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 170 ~~~~~~~~l~l---~~~l----~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
.+--.|.+|++ .... .+++...-| .|.-+.+-.++++ +-+|+-+|+|+|||+.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvF-pp~vie~lGi~HV----KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVF-PPEVIEQLGIKHV----KGILLYGPPGTGKTLIA 273 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcC-CHHHHHHcCccce----eeEEEECCCCCChhHHH
Confidence 34456777764 4432 222222222 3333334444333 46899999999999764
No 430
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=86.92 E-value=2.3 Score=46.22 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=42.8
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeCh
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTP 320 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP 320 (465)
.++||.++||..|.+++..|... ++.+..++|+.+.......+ .+..+|||||-
T Consensus 225 ~~~IIf~~sr~~~e~la~~L~~~----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~ 282 (591)
T TIGR01389 225 QSGIIYASSRKKVEELAERLESQ----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN 282 (591)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 36899999999999999988753 78889999999876554433 35688999995
No 431
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=86.90 E-value=4.1 Score=36.65 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChhHHhh
Q 012337 213 DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~ 229 (465)
.+++.|++|||||....
T Consensus 3 ~ili~G~~~sGKS~~a~ 19 (170)
T PRK05800 3 LILVTGGARSGKSRFAE 19 (170)
T ss_pred EEEEECCCCccHHHHHH
Confidence 47999999999996543
No 432
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.83 E-value=1.7 Score=45.99 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=13.8
Q ss_pred EEEEcCCCCChhHHhhH
Q 012337 214 IIGAAETGSGKTLAFGL 230 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~l 230 (465)
.|++||.|+|||.+..+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999876544
No 433
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.76 E-value=2.3 Score=47.52 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=18.1
Q ss_pred ceeEEEecchhHhhhcCCHHHHHHHHH
Q 012337 339 TLSFFVLDEADRMIENGHFRELQSIID 365 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~~~~l~~i~~ 365 (465)
..++|+|||+|.+- ...+..+..+++
T Consensus 553 p~~VvllDEieka~-~~~~~~Ll~~ld 578 (731)
T TIGR02639 553 PHCVLLLDEIEKAH-PDIYNILLQVMD 578 (731)
T ss_pred CCeEEEEechhhcC-HHHHHHHHHhhc
Confidence 45799999999875 445555555554
No 434
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.73 E-value=1.8 Score=47.14 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=27.6
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+++-.+||+|||-.-||......|+..++.+.
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~ 651 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLM 651 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhh
Confidence 56778999999999999988888888887765
No 435
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.64 E-value=2.3 Score=47.81 Aligned_cols=18 Identities=28% Similarity=0.171 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+..+++.||+|+|||...
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999653
No 436
>PRK07004 replicative DNA helicase; Provisional
Probab=86.49 E-value=3.7 Score=43.23 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQR 235 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~ 235 (465)
..|.=+++.|++|+|||.. ++-+..+
T Consensus 211 ~~g~liviaarpg~GKT~~-al~ia~~ 236 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAF-SMNIGEY 236 (460)
T ss_pred CCCceEEEEeCCCCCccHH-HHHHHHH
Confidence 3466688899999999954 4444433
No 437
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.48 E-value=3.4 Score=45.12 Aligned_cols=49 Identities=12% Similarity=0.280 Sum_probs=27.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhH
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~l 230 (465)
..+.++-.++..+..+... +....++ ...++-+++.||+|+|||.++-+
T Consensus 81 ~~ldel~~~~~ki~~l~~~-------l~~~~~~--~~~~~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETW-------LKAQVLE--NAPKRILLITGPSGCGKSTTIKI 129 (637)
T ss_pred CCHHHhcCcHHHHHHHHHH-------HHhcccc--cCCCcEEEEECCCCCCHHHHHHH
Confidence 4566777777665544321 0000011 11234489999999999986543
No 438
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=86.47 E-value=2.2 Score=46.76 Aligned_cols=92 Identities=20% Similarity=0.356 Sum_probs=61.7
Q ss_pred CeEEEEEcccHH--------HHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhC
Q 012337 262 HLRALIITPTRE--------LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSG 329 (465)
Q Consensus 262 ~~~vLil~Ptr~--------La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~ 329 (465)
+.+++|++|+.+ -|.++++.+.... .++.+..++|+++.......+. +..+|||||. ++..
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 520 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIEV 520 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eeec
Confidence 457999999863 3445556665543 4688999999998765544332 4689999996 4444
Q ss_pred CCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 330 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
| +++.++.++|+..+++.. ...+.++..+..
T Consensus 521 G----vDiP~v~~VIi~~~~r~g----ls~lhQ~~GRvG 551 (630)
T TIGR00643 521 G----VDVPNATVMVIEDAERFG----LSQLHQLRGRVG 551 (630)
T ss_pred C----cccCCCcEEEEeCCCcCC----HHHHHHHhhhcc
Confidence 4 778999999988887532 334444554443
No 439
>PRK05748 replicative DNA helicase; Provisional
Probab=86.44 E-value=1.8 Score=45.28 Aligned_cols=27 Identities=41% Similarity=0.459 Sum_probs=18.8
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
..|.-+++.|+||.|||. |.+.++.++
T Consensus 201 ~~G~livIaarpg~GKT~-~al~ia~~~ 227 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTA-FALNIAQNV 227 (448)
T ss_pred CCCceEEEEeCCCCCchH-HHHHHHHHH
Confidence 345668899999999994 444444443
No 440
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=86.36 E-value=4.6 Score=40.32 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+.-+++.||+|+|||....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567889999999997643
No 441
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.30 E-value=2 Score=43.37 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.+..++++||||||||... ..++..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 4678999999999999663 3344444
No 442
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=86.22 E-value=4 Score=41.38 Aligned_cols=71 Identities=20% Similarity=0.355 Sum_probs=51.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCcee
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLS 341 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~ 341 (465)
+.++||+++|+.-|..++..|... +.++.+..++|......+.+.. ..+|+|||. ++..| +++..+
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~--~~~iLVaTd-----v~~rG----iDi~~~- 337 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAM--QFDILLGTS-----TVDVG----VDFKRD- 337 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhc--cCCEEEEec-----HHhcc----cCCCCc-
Confidence 447999999999999999999864 2356778888988876655443 578999997 34444 555555
Q ss_pred EEEec
Q 012337 342 FFVLD 346 (465)
Q Consensus 342 ~lViD 346 (465)
++|++
T Consensus 338 ~vi~~ 342 (357)
T TIGR03158 338 WLIFS 342 (357)
T ss_pred eEEEC
Confidence 56665
No 443
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=86.14 E-value=2.6 Score=46.06 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=43.5
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeCh
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTP 320 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP 320 (465)
+.++||.++|+.-|.+++..|... ++.+..++|+.+.......+ .+..+|||||.
T Consensus 236 ~~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~ 294 (607)
T PRK11057 236 GKSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV 294 (607)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec
Confidence 346899999999999999888764 78899999999876544333 34678999996
No 444
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.12 E-value=0.55 Score=46.17 Aligned_cols=19 Identities=42% Similarity=0.476 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
+..|+++.+|||||||+.+
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 3568999999999999765
No 445
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=86.04 E-value=3 Score=45.40 Aligned_cols=62 Identities=21% Similarity=0.431 Sum_probs=37.6
Q ss_pred ecCCCHHHHHHHHhCCCc-EEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCC-HHHHHHHHHhCC
Q 012337 297 VGGMSTEKQERLLKARPE-LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH-FRELQSIIDMLP 368 (465)
Q Consensus 297 ~gg~~~~~~~~~~~~~~d-IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~-~~~l~~i~~~l~ 368 (465)
.||.......+ ++.. -|=+-||++.+.|..-. . .=-++.|||+|.+. .|+ ++--..+++.|.
T Consensus 471 vGG~tDvAeIk---GHRRTYVGAMPGkiIq~LK~v~-----t-~NPliLiDEvDKlG-~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 471 VGGMTDVAEIK---GHRRTYVGAMPGKIIQCLKKVK-----T-ENPLILIDEVDKLG-SGHQGDPASALLELLD 534 (906)
T ss_pred ccccccHHhhc---ccceeeeccCChHHHHHHHhhC-----C-CCceEEeehhhhhC-CCCCCChHHHHHHhcC
Confidence 46666544333 3322 34467999999995421 1 22378899999998 544 455555566554
No 446
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=86.03 E-value=3.9 Score=37.31 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=19.8
Q ss_pred ceeEEEecchhHhhhcCC--HHHHHHHHH
Q 012337 339 TLSFFVLDEADRMIENGH--FRELQSIID 365 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~--~~~l~~i~~ 365 (465)
.+++||+||.-..+..++ .+.|..++.
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~ 150 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLK 150 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHh
Confidence 689999999999887775 344444443
No 447
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=86.00 E-value=6.3 Score=40.47 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=17.6
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
.++..|++.++||+||++.+
T Consensus 99 p~~~~vLi~GetGtGKel~A 118 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFA 118 (403)
T ss_pred CCCCcEEEecCCCccHHHHH
Confidence 36889999999999999865
No 448
>PRK13764 ATPase; Provisional
Probab=85.92 E-value=0.96 Score=48.89 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=21.3
Q ss_pred HHhcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 207 AAHQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 207 ~l~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
+.....+++++|+||||||.. +..++.++
T Consensus 253 l~~~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 253 LEERAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred HHhcCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 334577899999999999964 44555555
No 449
>PRK13695 putative NTPase; Provisional
Probab=85.83 E-value=8.8 Score=34.32 Aligned_cols=17 Identities=29% Similarity=0.145 Sum_probs=14.2
Q ss_pred cEEEEcCCCCChhHHhh
Q 012337 213 DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~ 229 (465)
.+++.+++|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997654
No 450
>PRK08506 replicative DNA helicase; Provisional
Probab=85.64 E-value=3.6 Score=43.42 Aligned_cols=115 Identities=18% Similarity=0.141 Sum_probs=56.5
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHcc
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 288 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~ 288 (465)
..|.=+++.|+||.|||... +-+..++... +..|+|++. -.-+.|+...+.....+
T Consensus 190 ~~G~LivIaarpg~GKT~fa-l~ia~~~~~~----------------------g~~V~~fSl-EMs~~ql~~Rlla~~s~ 245 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLC-LNMALKALNQ----------------------DKGVAFFSL-EMPAEQLMLRMLSAKTS 245 (472)
T ss_pred CCCceEEEEcCCCCChHHHH-HHHHHHHHhc----------------------CCcEEEEeC-cCCHHHHHHHHHHHhcC
Confidence 34566888999999999544 4444333211 224666643 33455666665443322
Q ss_pred CCceEEEEecCCCHHHHH------HHHhCCCcEEEe-----ChHHHHHHHhCCCccccccCceeEEEecchhHhh
Q 012337 289 INVRVVPIVGGMSTEKQE------RLLKARPELVVG-----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 289 ~~~~v~~~~gg~~~~~~~------~~~~~~~dIiV~-----TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll 352 (465)
..+.- ...|..+..... ..+.. ..+.|- |+..|...+..- ......+.+||||=.+.|.
T Consensus 246 v~~~~-i~~~~l~~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l---~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 246 IPLQN-LRTGDLDDDEWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKL---KSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred CCHHH-HhcCCCCHHHHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHH---HHhCCCCCEEEEcChhhcc
Confidence 22211 012333322211 12223 234443 444454444221 0112358899999998765
No 451
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=85.51 E-value=2.2 Score=47.07 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.+++-|.+++... ...++|.|..|||||.+-.--+...+.. .+...-.+|.|+=|+-.
T Consensus 2 ~Ln~~Q~~av~~~---~gp~lV~AGaGsGKT~vlt~Ria~li~~-------------------~~v~p~~Il~vTFTnkA 59 (655)
T COG0210 2 KLNPEQREAVLHP---DGPLLVLAGAGSGKTRVLTERIAYLIAA-------------------GGVDPEQILAITFTNKA 59 (655)
T ss_pred CCCHHHHHHHhcC---CCCeEEEECCCCCchhhHHHHHHHHHHc-------------------CCcChHHeeeeechHHH
Confidence 5789999998543 5678888889999998855544444421 11223359999999999
Q ss_pred HHHHHHHHHHHHc
Q 012337 275 ALQVTDHLKEVAK 287 (465)
Q Consensus 275 a~Qv~~~l~~l~~ 287 (465)
|.++...+..+..
T Consensus 60 A~em~~Rl~~~~~ 72 (655)
T COG0210 60 AAEMRERLLKLLG 72 (655)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988865
No 452
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.48 E-value=7.2 Score=34.73 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=13.8
Q ss_pred EEEEcCCCCChhHHhhH
Q 012337 214 IIGAAETGSGKTLAFGL 230 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~l 230 (465)
+++.|++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67889999999977433
No 453
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=85.47 E-value=1.4 Score=41.98 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=19.9
Q ss_pred HHhcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 207 AAHQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 207 ~l~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
++...-.+++.|++||||| .+++-+|..+
T Consensus 9 l~~~~fr~viIG~sGSGKT-~li~~lL~~~ 37 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKT-TLIKSLLYYL 37 (241)
T ss_pred hcCCCceEEEECCCCCCHH-HHHHHHHHhh
Confidence 3333447999999999999 4455555443
No 454
>PRK09354 recA recombinase A; Provisional
Probab=85.26 E-value=4.9 Score=40.56 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQ 234 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~ 234 (465)
|.-+.+.+|+|||||...+..+.+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~ 83 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAE 83 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999999665444443
No 455
>PRK08840 replicative DNA helicase; Provisional
Probab=85.01 E-value=3.7 Score=43.24 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=18.4
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
+.|.=+++.|+||.|||... +-+..++
T Consensus 215 ~~g~LiviaarPg~GKTafa-lnia~~~ 241 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFA-MNLCENA 241 (464)
T ss_pred CCCceEEEEeCCCCchHHHH-HHHHHHH
Confidence 44566788999999999554 4444333
No 456
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.01 E-value=2 Score=48.68 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=17.4
Q ss_pred ceeEEEecchhHhhhcCCHHHHHHHHH
Q 012337 339 TLSFFVLDEADRMIENGHFRELQSIID 365 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~~~~l~~i~~ 365 (465)
..++|+|||+|.+- ...+..+..+++
T Consensus 611 p~~VvllDeieka~-~~v~~~Llq~le 636 (821)
T CHL00095 611 PYTVVLFDEIEKAH-PDIFNLLLQILD 636 (821)
T ss_pred CCeEEEECChhhCC-HHHHHHHHHHhc
Confidence 34789999999874 444555555554
No 457
>PRK10867 signal recognition particle protein; Provisional
Probab=84.92 E-value=4.7 Score=41.99 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=15.5
Q ss_pred cEEEEcCCCCChhHHhhHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpi 232 (465)
-+++++++|+|||.+..-.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47889999999998754433
No 458
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=84.72 E-value=7.9 Score=37.08 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=17.1
Q ss_pred hcCC-cEEEEcCCCCChhHHhh
Q 012337 209 HQGK-DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 209 ~~~~-dvl~~a~TGsGKT~~~~ 229 (465)
..++ -+.++++-|||||+..-
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred hcCCceEEEEecCCCchhHHHH
Confidence 3455 68899999999998766
No 459
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=84.69 E-value=3.7 Score=37.08 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=22.7
Q ss_pred CceeEEEecchhHhhhcCC--HHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGH--FRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~--~~~l~~i~~~l~ 368 (465)
..+++||+||+-..+..++ .+.|..+++.-|
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp 128 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERP 128 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC
Confidence 5789999999999888886 445555555443
No 460
>PHA00350 putative assembly protein
Probab=84.63 E-value=7.3 Score=40.02 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=16.8
Q ss_pred EEEEcCCCCChhHHhhH-HHHHHH
Q 012337 214 IIGAAETGSGKTLAFGL-PIMQRL 236 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~l-pil~~l 236 (465)
.++.|..|||||+..+- .++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 47889999999987654 444444
No 461
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=84.61 E-value=3 Score=43.48 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=18.6
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
..|.=+++.|++|+|||. |++-++.++
T Consensus 193 ~~G~l~vi~g~pg~GKT~-~~l~~a~~~ 219 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTA-FALNIAENA 219 (434)
T ss_pred CCCeEEEEEeCCCCChHH-HHHHHHHHH
Confidence 345668899999999994 444444443
No 462
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=84.59 E-value=1.4 Score=48.31 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=34.8
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 284 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~ 284 (465)
..++++.||||||||..+++|-+-.. +.-+||+=|-.|+...+....++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~~-------------------------~gS~VV~DpKgEl~~~Ta~~R~~ 272 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALKW-------------------------GGPLVVLDPSTEVAPMVSEHRRD 272 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhcC-------------------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 45899999999999999999965321 11367777877876655554433
No 463
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.43 E-value=2.2 Score=47.67 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
.+.+++.||+|+|||+..
T Consensus 487 ~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999654
No 464
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.39 E-value=7.2 Score=41.34 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=35.6
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
.|.-+++.+++|+|||...+..+.+.+. .+-+++|++ +-+-..|+...+..+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~-----------------------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA-----------------------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-----------------------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 3567999999999999764444443321 133688877 566677888877765
No 465
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=84.28 E-value=9.2 Score=43.24 Aligned_cols=71 Identities=21% Similarity=0.400 Sum_probs=53.8
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhC----CCcEEEeChHHHHHHHhCCCccccccCc
Q 012337 264 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA----RPELVVGTPGRLWELMSGGEKHLVELHT 339 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~----~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 339 (465)
.+||.+|++.-+.+++..|..... .++.+..+||+.+...+...+.. ...|||||. +...+ +++..
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IAErg----ItIp~ 280 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IAETS----LTIEG 280 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hHhhc----ccccC
Confidence 699999999999999988876432 37889999999999887776643 357999996 33333 66777
Q ss_pred eeEEE
Q 012337 340 LSFFV 344 (465)
Q Consensus 340 i~~lV 344 (465)
|.+||
T Consensus 281 V~~VI 285 (819)
T TIGR01970 281 IRVVI 285 (819)
T ss_pred ceEEE
Confidence 76554
No 466
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=84.22 E-value=2.4 Score=42.40 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHH---hcC---CcEEEEcCCCCChhHHhhH
Q 012337 197 TPIQKACIPAAA---HQG---KDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 197 ~~iQ~~~i~~~l---~~~---~dvl~~a~TGsGKT~~~~l 230 (465)
+|+|...+..+. .++ +-.++.||.|.||+..+..
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~ 43 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA 43 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH
Confidence 567766665543 233 3578999999999865433
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=84.20 E-value=0.91 Score=41.92 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=16.0
Q ss_pred EEEEcCCCCChhHHhhHHHHHHH
Q 012337 214 IIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~lpil~~l 236 (465)
++++||||||||... ..++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 789999999999763 3344444
No 468
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=84.15 E-value=2.7 Score=42.29 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=23.6
Q ss_pred CcHHHHHHHHHHHh---cCC---cEEEEcCCCCChhHHhh
Q 012337 196 PTPIQKACIPAAAH---QGK---DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 196 p~~iQ~~~i~~~l~---~~~---dvl~~a~TGsGKT~~~~ 229 (465)
++|+|...|..+.. +++ -.|+.||.|.||+..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 45777777766542 333 57899999999986543
No 469
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=84.10 E-value=4.2 Score=45.48 Aligned_cols=17 Identities=35% Similarity=0.270 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHhh
Q 012337 213 DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~ 229 (465)
.++++||||+|||...-
T Consensus 490 ~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999997653
No 470
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.03 E-value=5.9 Score=45.18 Aligned_cols=28 Identities=11% Similarity=0.281 Sum_probs=21.4
Q ss_pred eEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 341 SFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 341 ~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
-+||||++|.+-+......+..++.+++
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~ 150 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCC
Confidence 4799999998864544567778888776
No 471
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=84.02 E-value=5.1 Score=45.60 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
..++++.||+|+|||...-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 4589999999999997654
No 472
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=84.01 E-value=2.4 Score=49.70 Aligned_cols=74 Identities=15% Similarity=0.328 Sum_probs=51.4
Q ss_pred eEEEEEcccH---HHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCc
Q 012337 263 LRALIITPTR---ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 339 (465)
Q Consensus 263 ~~vLil~Ptr---~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 339 (465)
+++||.++|+ +.|..++..|... |+.+..++|+...........+..+|||||... .+.+.+| +++..
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~----g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~-tdv~aRG----IDip~ 397 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENH----GVKAVAYHATKPKEDYEKFAEGEIDVLIGVASY-YGTLVRG----LDLPE 397 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhC----CceEEEEeCCCCHHHHHHHHcCCCCEEEEeccc-cCccccc----CCCCc
Confidence 4689999999 8888888877654 789999999987544444445678999998310 1222333 55665
Q ss_pred -eeEEEe
Q 012337 340 -LSFFVL 345 (465)
Q Consensus 340 -i~~lVi 345 (465)
|+++|.
T Consensus 398 ~V~~vI~ 404 (1171)
T TIGR01054 398 RVRYAVF 404 (1171)
T ss_pred cccEEEE
Confidence 667665
No 473
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=83.81 E-value=0.71 Score=43.37 Aligned_cols=14 Identities=36% Similarity=0.461 Sum_probs=12.0
Q ss_pred EEEEcCCCCChhHH
Q 012337 214 IIGAAETGSGKTLA 227 (465)
Q Consensus 214 vl~~a~TGsGKT~~ 227 (465)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999964
No 474
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.73 E-value=0.5 Score=41.83 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=16.2
Q ss_pred EEEEcCCCCChhHHhhHHHHH
Q 012337 214 IIGAAETGSGKTLAFGLPIMQ 234 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~lpil~ 234 (465)
.|+.+|+|||||..|......
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~ 25 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAP 25 (187)
T ss_pred EEEecCCCCCceeeeeccchh
Confidence 477899999999988654443
No 475
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=83.60 E-value=7.6 Score=43.45 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCChhHH
Q 012337 210 QGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~ 227 (465)
.++.+++.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 357899999999999965
No 476
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=83.57 E-value=6 Score=37.99 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCChhH
Q 012337 210 QGKDIIGAAETGSGKTL 226 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~ 226 (465)
.|+.+++.|+.|+|||.
T Consensus 15 ~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 15 KGQRGLIVAPPKAGKTT 31 (249)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 68999999999999995
No 477
>PRK08760 replicative DNA helicase; Provisional
Probab=83.54 E-value=2.8 Score=44.34 Aligned_cols=130 Identities=22% Similarity=0.199 Sum_probs=62.1
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHcc
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 288 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~ 288 (465)
..|.=+++.|++|.|||.. ++-+..++... .+..|+|++. -.-..|+...+......
T Consensus 227 ~~G~LivIaarPg~GKTaf-al~iA~~~a~~---------------------~g~~V~~fSl-EMs~~ql~~Rl~a~~s~ 283 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTF-ALNIAEYAAIK---------------------SKKGVAVFSM-EMSASQLAMRLISSNGR 283 (476)
T ss_pred CCCceEEEEeCCCCChhHH-HHHHHHHHHHh---------------------cCCceEEEec-cCCHHHHHHHHHHhhCC
Confidence 3455678899999999954 44444443211 1224666643 22344666665544322
Q ss_pred CCceEEEEecCCCHHHH------HHHHhCCCcEEEe-----ChHHHHHHHhCCCccccccCceeEEEecchhHhhhcC--
Q 012337 289 INVRVVPIVGGMSTEKQ------ERLLKARPELVVG-----TPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENG-- 355 (465)
Q Consensus 289 ~~~~v~~~~gg~~~~~~------~~~~~~~~dIiV~-----TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~-- 355 (465)
+...- ...|..+.... ...+. ...|.|. |+..|...+..- ..-..+.+||||=.+.|-..+
T Consensus 284 i~~~~-i~~g~l~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l----~~~~~~~lVvIDyLql~~~~~~~ 357 (476)
T PRK08760 284 INAQR-LRTGALEDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRL----KREHDLGLIVIDYLQLMSVPGNS 357 (476)
T ss_pred CcHHH-HhcCCCCHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHH----HHhcCCCEEEEecHHhcCCCCCC
Confidence 22211 11233332221 11222 2345444 344554444211 112458899999998774222
Q ss_pred --CHHHHHHHHHhC
Q 012337 356 --HFRELQSIIDML 367 (465)
Q Consensus 356 --~~~~l~~i~~~l 367 (465)
....+..|...|
T Consensus 358 ~~r~~ei~~Isr~L 371 (476)
T PRK08760 358 ENRATEISEISRSL 371 (476)
T ss_pred cccHHHHHHHHHHH
Confidence 234455554444
No 478
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=83.46 E-value=1.4 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQ 234 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~ 234 (465)
..++++.||||||||..+++|.|-
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL 198 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLL 198 (636)
T ss_pred CceEEEEecCCCCCceEEEccchh
Confidence 357999999999999999999764
No 479
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=83.36 E-value=8.2 Score=39.03 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=63.2
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCcccc
Q 012337 260 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLV 335 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~~ 335 (465)
.+.|.|||.+-.++=+..+++.+-- .|+.++.++||.+..+....+. +.-|++|+|.- -+. .+
T Consensus 419 KT~PpVLIFaEkK~DVD~IhEYLLl----KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDV-----ASK----GL 485 (610)
T KOG0341|consen 419 KTSPPVLIFAEKKADVDDIHEYLLL----KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDV-----ASK----GL 485 (610)
T ss_pred cCCCceEEEeccccChHHHHHHHHH----ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecc-----hhc----cC
Confidence 4678899999999888888877643 2889999999998876654432 46799999962 222 26
Q ss_pred ccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCC
Q 012337 336 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTN 371 (465)
Q Consensus 336 ~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~ 371 (465)
++..|.+|| ...+-..|+.-..++-++.
T Consensus 486 DFp~iqHVI--------NyDMP~eIENYVHRIGRTG 513 (610)
T KOG0341|consen 486 DFPDIQHVI--------NYDMPEEIENYVHRIGRTG 513 (610)
T ss_pred CCccchhhc--------cCCChHHHHHHHHHhcccC
Confidence 677775333 3555667777776666543
No 480
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=83.04 E-value=8.3 Score=42.50 Aligned_cols=76 Identities=25% Similarity=0.433 Sum_probs=56.8
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||+++|+..|..+...|... ++.+..++|+.....+...+ .+..+|+||| ..+..| +++
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-----~~L~rG----fdl 512 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLREG----LDI 512 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-----CHHhCC----ccc
Confidence 558999999999999988888764 78888999988764433322 2467899998 345554 778
Q ss_pred CceeEEEecchhH
Q 012337 338 HTLSFFVLDEADR 350 (465)
Q Consensus 338 ~~i~~lViDEah~ 350 (465)
..+.++|+=+++.
T Consensus 513 p~v~lVii~d~ei 525 (652)
T PRK05298 513 PEVSLVAILDADK 525 (652)
T ss_pred cCCcEEEEeCCcc
Confidence 8999888766763
No 481
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=83.01 E-value=4.9 Score=43.39 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=26.4
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+++-.++|+|||..-+|......+...+..+.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 55668999999999999888888888877554
No 482
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.87 E-value=3.7 Score=42.56 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCChhHH
Q 012337 210 QGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~ 227 (465)
....+.++|.+|+|||.+
T Consensus 174 t~gSlYVsG~PGtgkt~~ 191 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTAL 191 (529)
T ss_pred cCcceEeeCCCCcchHHH
Confidence 456899999999999965
No 483
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=82.83 E-value=8.1 Score=31.97 Aligned_cols=75 Identities=19% Similarity=0.368 Sum_probs=51.8
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH---Hh-CCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LK-ARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---~~-~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++++..+.++...|.. .+..+..++|+......... +. ....|+|+|.. +..| .++
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-----~~~G----~d~ 94 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-----IARG----IDL 94 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-----hhcC----cCh
Confidence 44799999999999999988876 36778889999875443322 22 34579998852 2222 556
Q ss_pred CceeEEEecchh
Q 012337 338 HTLSFFVLDEAD 349 (465)
Q Consensus 338 ~~i~~lViDEah 349 (465)
..+..+|+...+
T Consensus 95 ~~~~~vi~~~~~ 106 (131)
T cd00079 95 PNVSVVINYDLP 106 (131)
T ss_pred hhCCEEEEeCCC
Confidence 677777766553
No 484
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=82.81 E-value=3.1 Score=38.84 Aligned_cols=25 Identities=28% Similarity=0.122 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQ 234 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~ 234 (465)
.|.-+.+.|++|+|||...+..+.+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH
Confidence 3567899999999999765544444
No 485
>PRK05636 replicative DNA helicase; Provisional
Probab=82.75 E-value=1.4 Score=46.88 Aligned_cols=19 Identities=42% Similarity=0.401 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
|.=+++.|+||.|||...+
T Consensus 265 G~Liiiaarpg~GKT~~al 283 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLAL 283 (505)
T ss_pred CceEEEEeCCCCCHHHHHH
Confidence 4456889999999995443
No 486
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=82.68 E-value=4.2 Score=42.65 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCChhHHhhH
Q 012337 212 KDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~l 230 (465)
+.+|++||.|+|||.+...
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARI 58 (451)
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 3578999999999976544
No 487
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=82.65 E-value=3.3 Score=44.26 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=25.0
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDML 367 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l 367 (465)
+++-.++|+||+-.-+|......+...+..+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 5677899999999888887777777777655
No 488
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=82.47 E-value=8.5 Score=39.58 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCChhHH
Q 012337 210 QGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~ 227 (465)
.|+-+++.||+|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 688999999999999964
No 489
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=82.26 E-value=6 Score=44.27 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=45.0
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh--------CCCcEEEeCh
Q 012337 260 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK--------ARPELVVGTP 320 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~--------~~~dIiV~TP 320 (465)
..+.+++||+.|..-|..++..++.... .++++++.....+...... +.+.|+|||.
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~----~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ 502 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGP----KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ 502 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCC----CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee
Confidence 3456899999999999999999987642 7899999988766555444 4678888884
No 490
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=81.86 E-value=14 Score=41.84 Aligned_cols=72 Identities=18% Similarity=0.324 Sum_probs=55.0
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhC----CCcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA----RPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~----~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
..+||.+|++.-+.++++.|.... ..++.+..++|+.+...+...+.. ...|||||. +...+ +++.
T Consensus 213 g~iLVFlpg~~ei~~l~~~L~~~~-~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IAErs----LtIp 282 (812)
T PRK11664 213 GSLLLFLPGVGEIQRVQEQLASRV-ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IAETS----LTIE 282 (812)
T ss_pred CCEEEEcCCHHHHHHHHHHHHHhc-cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hHHhc----cccc
Confidence 369999999999999999998632 236889999999999877776652 358999997 33433 6678
Q ss_pred ceeEEE
Q 012337 339 TLSFFV 344 (465)
Q Consensus 339 ~i~~lV 344 (465)
.|.+||
T Consensus 283 ~V~~VI 288 (812)
T PRK11664 283 GIRLVV 288 (812)
T ss_pred CceEEE
Confidence 887655
No 491
>PRK05595 replicative DNA helicase; Provisional
Probab=81.60 E-value=3.1 Score=43.58 Aligned_cols=26 Identities=38% Similarity=0.460 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|.=+++.|+||.|||. |++.+..++
T Consensus 200 ~g~liviaarpg~GKT~-~al~ia~~~ 225 (444)
T PRK05595 200 KGDMILIAARPSMGKTT-FALNIAEYA 225 (444)
T ss_pred CCcEEEEEecCCCChHH-HHHHHHHHH
Confidence 45557789999999995 444444443
No 492
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=81.59 E-value=4 Score=44.44 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH--HHHHHHHHHHHHHHc
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR--ELALQVTDHLKEVAK 287 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr--~La~Qv~~~l~~l~~ 287 (465)
..+++|.|+||+|||..+.+.+.+.+.. +..++|+=|-. ++...++..++.+.+
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~-----------------------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR-----------------------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc-----------------------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 4578999999999999887777666631 33678888876 466666766666554
No 493
>PRK13767 ATP-dependent helicase; Provisional
Probab=81.36 E-value=5.9 Score=45.26 Aligned_cols=73 Identities=23% Similarity=0.266 Sum_probs=51.0
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHcc--CCceEEEEecCCCHHHHHHH---Hh-CCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 264 RALIITPTRELALQVTDHLKEVAKG--INVRVVPIVGGMSTEKQERL---LK-ARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~--~~~~v~~~~gg~~~~~~~~~---~~-~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
++||.|+||..|..++..+...... .+..+...+|+.+...+... ++ +...|||||.- +..| +++
T Consensus 286 ~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----Le~G----IDi 356 (876)
T PRK13767 286 TTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----LELG----IDI 356 (876)
T ss_pred CEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----HHhc----CCC
Confidence 6999999999999999998875431 24678889999987654332 22 45689999863 2222 556
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
..+++||.
T Consensus 357 p~Vd~VI~ 364 (876)
T PRK13767 357 GYIDLVVL 364 (876)
T ss_pred CCCcEEEE
Confidence 66666664
No 494
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=81.28 E-value=5.5 Score=44.13 Aligned_cols=92 Identities=20% Similarity=0.352 Sum_probs=60.6
Q ss_pred CeEEEEEcccHH--------HHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhC
Q 012337 262 HLRALIITPTRE--------LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSG 329 (465)
Q Consensus 262 ~~~vLil~Ptr~--------La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~ 329 (465)
+-+++|++|+.+ -+..+++.+.... .++.+..++|+++.......+ .+..+|||||. ++..
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie~ 543 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAF--PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIEV 543 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ceee
Confidence 447999999653 3445555555442 247899999999876554433 24579999995 4444
Q ss_pred CCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 330 GEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
| +++.++.++|+..+++.. ...+.+++.+..
T Consensus 544 G----iDip~v~~VIi~~~~r~g----ls~lhQ~~GRvG 574 (681)
T PRK10917 544 G----VDVPNATVMVIENAERFG----LAQLHQLRGRVG 574 (681)
T ss_pred C----cccCCCcEEEEeCCCCCC----HHHHHHHhhccc
Confidence 4 778999999998887532 233444444443
No 495
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.24 E-value=5.1 Score=40.49 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=48.4
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCccccccCc
Q 012337 264 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVELHT 339 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 339 (465)
-+||.+.|-.-+..+.=.|.. .|+.+..++|.++.......+. ..++|+|||.-. .++ ++...
T Consensus 302 s~iVF~~t~~tt~~la~~L~~----lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVa-----SRG----LDip~ 368 (476)
T KOG0330|consen 302 SVIVFCNTCNTTRFLALLLRN----LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVA-----SRG----LDIPH 368 (476)
T ss_pred cEEEEEeccchHHHHHHHHHh----cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchh-----ccc----CCCCC
Confidence 488888887776666555544 4899999999998876544432 468999999633 333 66777
Q ss_pred eeEEE
Q 012337 340 LSFFV 344 (465)
Q Consensus 340 i~~lV 344 (465)
+++||
T Consensus 369 Vd~VV 373 (476)
T KOG0330|consen 369 VDVVV 373 (476)
T ss_pred ceEEE
Confidence 77766
No 496
>PRK10263 DNA translocase FtsK; Provisional
Probab=81.11 E-value=5.6 Score=46.48 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLE 238 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~ 238 (465)
..++||.|.||||||.+.-..|+..+++
T Consensus 1010 ~PHLLIAGaTGSGKSv~LntLIlSLl~~ 1037 (1355)
T PRK10263 1010 MPHLLVAGTTGSGKSVGVNAMILSMLYK 1037 (1355)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 3578999999999998765555555543
No 497
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.06 E-value=2.3 Score=46.45 Aligned_cols=29 Identities=10% Similarity=0.409 Sum_probs=19.1
Q ss_pred ccCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 336 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 336 ~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.+...+++||||||.|-. .....+++.|-
T Consensus 118 ~~~~~KVvIIdea~~Ls~----~a~naLLK~LE 146 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQ----AAFNAFLKTLE 146 (614)
T ss_pred ccCCcEEEEEECcccCCH----HHHHHHHHHHh
Confidence 356778999999998852 23344444444
No 498
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=80.86 E-value=1.4 Score=32.62 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
|..+++.+++|||||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999763
No 499
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=80.85 E-value=2.4 Score=43.54 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=20.4
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEE 239 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~ 239 (465)
..+++++.|.||||||. ++.+++..+...
T Consensus 14 e~~~~li~G~~GsGKT~-~i~~ll~~~~~~ 42 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQ-AIRHLLDQIRAR 42 (386)
T ss_dssp GGG-EEEEE-TTSSHHH-HHHHHHHHHHHT
T ss_pred hhCcEEEECCCCCCHHH-HHHHHHHHHHHc
Confidence 46789999999999996 556677666543
No 500
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.78 E-value=9.4 Score=37.32 Aligned_cols=120 Identities=19% Similarity=0.266 Sum_probs=76.2
Q ss_pred cCCcEEEEcCC-CCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHcc
Q 012337 210 QGKDIIGAAET-GSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 288 (465)
Q Consensus 210 ~~~dvl~~a~T-GsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~ 288 (465)
.++-|+|.|.+ |-|+.+||.+.-. +--.+|++--.|.| ..+.+++++....
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~---------------------------G~~l~lvar~~rrl-~~v~~~l~~~~~~ 62 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKR---------------------------GAKLVLVARRARRL-ERVAEELRKLGSL 62 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhC---------------------------CCceEEeehhhhhH-HHHHHHHHHhCCc
Confidence 57888888655 6699999876521 11134555555555 5666788777654
Q ss_pred CCceEEEEecCCCHHHHHH-------HHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHH
Q 012337 289 INVRVVPIVGGMSTEKQER-------LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQ 361 (465)
Q Consensus 289 ~~~~v~~~~gg~~~~~~~~-------~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~ 361 (465)
. ++..+..+.+...+.. ....+.||+|...|.... ..+...-++.++.+++-.+|..+.
T Consensus 63 ~--~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~~~~------------~~~~~~~~~~~~~~mdtN~~G~V~ 128 (282)
T KOG1205|consen 63 E--KVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISLV------------GFLEDTDIEDVRNVMDTNVFGTVY 128 (282)
T ss_pred C--ccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecCccccc------------cccccCcHHHHHHHhhhhchhhHH
Confidence 3 5777777776554433 234688999999887541 112233445566788888888887
Q ss_pred HHHHhCCCCC
Q 012337 362 SIIDMLPMTN 371 (465)
Q Consensus 362 ~i~~~l~~~~ 371 (465)
-....||...
T Consensus 129 ~Tk~alp~m~ 138 (282)
T KOG1205|consen 129 LTKAALPSMK 138 (282)
T ss_pred HHHHHHHHhh
Confidence 7777776443
Done!