Query 012337
Match_columns 465
No_of_seqs 449 out of 3002
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 07:27:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 2.5E-36 8.5E-41 288.0 21.4 196 168-406 24-219 (242)
2 3iuy_A Probable ATP-dependent 100.0 8E-35 2.7E-39 274.7 20.6 198 167-407 13-211 (228)
3 3fmo_B ATP-dependent RNA helic 100.0 4.8E-35 1.6E-39 288.2 19.3 187 171-407 90-280 (300)
4 2db3_A ATP-dependent RNA helic 100.0 1E-34 3.5E-39 300.3 22.6 200 167-407 50-249 (434)
5 1wrb_A DJVLGB; RNA helicase, D 100.0 5.5E-35 1.9E-39 280.3 18.9 201 171-406 21-221 (253)
6 3ly5_A ATP-dependent RNA helic 100.0 2.3E-34 7.9E-39 277.9 21.4 192 173-407 52-245 (262)
7 3ber_A Probable ATP-dependent 100.0 4.6E-34 1.6E-38 273.7 22.9 188 172-406 42-229 (249)
8 2pl3_A Probable ATP-dependent 100.0 7.4E-34 2.5E-38 269.5 23.1 192 171-406 23-214 (236)
9 1vec_A ATP-dependent RNA helic 100.0 9.7E-34 3.3E-38 262.7 23.3 186 173-406 3-189 (206)
10 3bor_A Human initiation factor 100.0 3.9E-34 1.3E-38 271.9 20.1 192 167-406 24-216 (237)
11 2oxc_A Probable ATP-dependent 100.0 1.4E-33 4.8E-38 266.8 23.3 188 169-405 20-209 (230)
12 1q0u_A Bstdead; DEAD protein, 100.0 3.7E-34 1.3E-38 268.6 18.7 186 173-406 4-193 (219)
13 1qde_A EIF4A, translation init 100.0 2E-33 6.8E-38 264.2 21.4 190 169-407 10-199 (224)
14 2gxq_A Heat resistant RNA depe 100.0 6.1E-33 2.1E-37 257.3 20.6 186 174-406 2-187 (207)
15 1t6n_A Probable ATP-dependent 100.0 1.8E-32 6.3E-37 257.0 22.7 189 171-407 12-203 (220)
16 3dkp_A Probable ATP-dependent 100.0 5.4E-33 1.9E-37 265.0 17.8 195 168-406 20-222 (245)
17 2i4i_A ATP-dependent RNA helic 100.0 1.4E-31 4.9E-36 273.9 25.2 214 167-407 9-223 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 1.1E-30 3.6E-35 267.2 22.0 187 172-406 36-222 (410)
19 3eiq_A Eukaryotic initiation f 100.0 1.5E-29 5.3E-34 258.4 22.3 189 170-406 37-226 (414)
20 3fmp_B ATP-dependent RNA helic 100.0 1.5E-29 5.1E-34 264.6 20.0 188 171-407 90-280 (479)
21 1s2m_A Putative ATP-dependent 100.0 2.5E-29 8.5E-34 256.0 20.9 187 172-406 20-206 (400)
22 3sqw_A ATP-dependent RNA helic 100.0 8.9E-30 3E-34 272.6 18.4 193 180-407 28-226 (579)
23 3l9o_A ATP-dependent RNA helic 100.0 1.5E-30 5E-35 295.1 12.3 182 173-416 162-343 (1108)
24 1fuu_A Yeast initiation factor 100.0 3.3E-29 1.1E-33 254.0 20.8 188 171-407 19-206 (394)
25 3i5x_A ATP-dependent RNA helic 100.0 2E-29 7E-34 268.7 18.4 194 179-407 78-277 (563)
26 1xti_A Probable ATP-dependent 100.0 7.7E-29 2.6E-33 251.3 21.1 188 173-408 8-198 (391)
27 1hv8_A Putative ATP-dependent 100.0 1.9E-28 6.5E-33 245.7 23.5 187 172-407 5-191 (367)
28 3fht_A ATP-dependent RNA helic 100.0 1.7E-28 5.9E-33 250.2 20.1 188 171-407 23-213 (412)
29 3pey_A ATP-dependent RNA helic 100.0 3E-28 1E-32 246.7 20.4 184 172-407 4-190 (395)
30 2z0m_A 337AA long hypothetical 100.0 2.1E-27 7.2E-32 235.5 22.9 173 180-407 1-173 (337)
31 2zj8_A DNA helicase, putative 99.9 2.9E-27 9.9E-32 259.3 16.4 190 174-416 2-191 (720)
32 2va8_A SSO2462, SKI2-type heli 99.9 7.2E-27 2.5E-31 256.0 17.5 190 173-416 8-197 (715)
33 3oiy_A Reverse gyrase helicase 99.9 1.9E-26 6.4E-31 236.4 16.0 178 184-405 10-204 (414)
34 2p6r_A Afuhel308 helicase; pro 99.9 1.1E-26 3.7E-31 254.1 10.7 191 174-416 2-194 (702)
35 4f92_B U5 small nuclear ribonu 99.9 4.1E-26 1.4E-30 267.5 16.0 195 180-417 911-1106(1724)
36 3fho_A ATP-dependent RNA helic 99.9 8.8E-26 3E-30 237.9 13.7 192 172-414 118-312 (508)
37 4a2p_A RIG-I, retinoic acid in 99.9 2.9E-25 9.8E-30 235.3 17.8 171 193-405 5-177 (556)
38 4f92_B U5 small nuclear ribonu 99.9 1.7E-25 5.8E-30 262.2 15.6 191 192-416 76-266 (1724)
39 2v1x_A ATP-dependent DNA helic 99.9 7.1E-25 2.4E-29 234.3 16.4 183 176-415 24-223 (591)
40 3tbk_A RIG-I helicase domain; 99.9 1.4E-24 4.9E-29 229.6 17.4 171 195-406 4-176 (555)
41 2ykg_A Probable ATP-dependent 99.9 2E-24 6.8E-29 235.7 17.3 180 185-405 3-184 (696)
42 2xgj_A ATP-dependent RNA helic 99.9 2.3E-24 8E-29 242.4 18.0 163 190-415 82-244 (1010)
43 1tf5_A Preprotein translocase 99.9 1.2E-24 4.3E-29 234.7 14.5 150 190-368 79-248 (844)
44 1oyw_A RECQ helicase, ATP-depe 99.9 1.4E-24 4.7E-29 229.3 14.0 184 173-415 2-197 (523)
45 4a2q_A RIG-I, retinoic acid in 99.9 5.5E-24 1.9E-28 235.8 18.5 173 191-405 244-418 (797)
46 4ddu_A Reverse gyrase; topoiso 99.9 5.2E-24 1.8E-28 241.5 17.8 172 190-405 74-261 (1104)
47 4a4z_A Antiviral helicase SKI2 99.9 2.1E-24 7.2E-29 242.7 14.4 165 191-416 36-200 (997)
48 3b6e_A Interferon-induced heli 99.9 4.4E-24 1.5E-28 198.4 13.4 152 193-363 31-186 (216)
49 1gku_B Reverse gyrase, TOP-RG; 99.9 5E-24 1.7E-28 241.4 13.8 170 190-408 53-229 (1054)
50 2fsf_A Preprotein translocase 99.9 1.9E-23 6.6E-28 224.9 14.9 150 191-369 71-240 (853)
51 3llm_A ATP-dependent RNA helic 99.9 3.3E-23 1.1E-27 196.4 13.6 180 181-416 47-229 (235)
52 4a2w_A RIG-I, retinoic acid in 99.9 4.9E-23 1.7E-27 231.3 14.9 174 191-405 244-418 (936)
53 1nkt_A Preprotein translocase 99.9 1.6E-22 5.4E-27 218.2 16.1 149 191-368 108-276 (922)
54 4gl2_A Interferon-induced heli 99.9 2.3E-22 7.9E-27 219.5 10.8 148 195-361 7-158 (699)
55 1rif_A DAR protein, DNA helica 99.9 2.8E-22 9.7E-27 195.0 10.2 154 195-408 113-266 (282)
56 1wp9_A ATP-dependent RNA helic 99.9 4E-21 1.4E-25 198.6 18.5 161 195-407 9-169 (494)
57 1gm5_A RECG; helicase, replica 99.8 6.3E-21 2.2E-25 208.6 15.3 138 182-351 356-502 (780)
58 2oca_A DAR protein, ATP-depend 99.8 8.9E-21 3E-25 199.5 13.0 153 195-407 113-265 (510)
59 2ipc_A Preprotein translocase 99.8 8.4E-20 2.9E-24 196.5 17.6 133 191-352 76-215 (997)
60 2jlq_A Serine protease subunit 99.8 4.9E-21 1.7E-25 198.6 4.8 152 192-406 1-153 (451)
61 2eyq_A TRCF, transcription-rep 99.8 9.4E-19 3.2E-23 199.6 21.2 169 178-407 586-764 (1151)
62 2whx_A Serine protease/ntpase/ 99.8 8.5E-21 2.9E-25 203.5 0.2 167 178-407 155-321 (618)
63 2xau_A PRE-mRNA-splicing facto 99.8 7.9E-19 2.7E-23 192.8 15.7 191 170-416 69-261 (773)
64 2fwr_A DNA repair protein RAD2 99.8 1E-18 3.5E-23 182.0 15.6 137 195-406 93-230 (472)
65 3o8b_A HCV NS3 protease/helica 99.8 9.6E-20 3.3E-24 194.7 5.9 145 197-407 219-363 (666)
66 2fz4_A DNA repair protein RAD2 99.8 3.6E-18 1.2E-22 161.9 14.0 137 195-406 93-230 (237)
67 2z83_A Helicase/nucleoside tri 99.7 3.8E-18 1.3E-22 177.3 9.4 137 205-407 15-156 (459)
68 1yks_A Genome polyprotein [con 99.7 1.4E-18 4.9E-23 179.5 2.1 133 209-407 6-143 (440)
69 2v6i_A RNA helicase; membrane, 99.7 2.1E-17 7.1E-22 170.3 10.8 136 211-407 2-137 (431)
70 3h1t_A Type I site-specific re 99.7 1.8E-17 6.1E-22 177.5 9.7 160 195-406 178-343 (590)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 3.3E-17 1.1E-21 183.8 11.6 156 195-406 271-440 (1038)
72 2wv9_A Flavivirin protease NS2 99.7 2.3E-18 8E-23 185.9 0.9 160 187-407 202-376 (673)
73 3crv_A XPD/RAD3 related DNA he 99.6 7.1E-16 2.4E-20 163.7 13.3 133 192-353 1-187 (551)
74 3rc3_A ATP-dependent RNA helic 99.6 1.1E-16 3.6E-21 172.7 4.1 137 210-413 154-290 (677)
75 1z63_A Helicase of the SNF2/RA 99.5 2.8E-14 9.6E-19 149.4 11.3 149 195-405 37-188 (500)
76 2vl7_A XPD; helicase, unknown 99.5 1.5E-14 5E-19 153.1 9.1 132 191-353 4-189 (540)
77 1z3i_X Similar to RAD54-like; 99.4 1.9E-12 6.5E-17 139.8 16.0 136 195-353 55-206 (644)
78 3dmq_A RNA polymerase-associat 99.4 2.7E-13 9.1E-18 152.6 9.0 133 195-354 153-288 (968)
79 4a15_A XPD helicase, ATP-depen 99.4 1.8E-12 6.1E-17 139.1 12.8 83 195-299 3-88 (620)
80 3mwy_W Chromo domain-containin 99.3 3.7E-12 1.3E-16 140.8 13.6 131 195-353 236-381 (800)
81 3jux_A Protein translocase sub 99.2 1.2E-10 4E-15 123.8 14.9 133 191-352 72-258 (822)
82 1w36_D RECD, exodeoxyribonucle 98.9 3E-09 1E-13 113.8 8.9 134 197-368 151-287 (608)
83 4b3f_X DNA-binding protein smu 98.0 1.6E-05 5.4E-10 85.7 9.9 68 195-285 189-256 (646)
84 2gk6_A Regulator of nonsense t 98.0 5.1E-05 1.7E-09 81.3 13.5 70 193-285 178-247 (624)
85 3upu_A ATP-dependent DNA helic 97.9 5.3E-05 1.8E-09 78.1 12.4 72 189-282 19-94 (459)
86 2xzl_A ATP-dependent helicase 97.9 0.0001 3.5E-09 81.0 15.4 70 193-285 358-427 (802)
87 2wjy_A Regulator of nonsense t 97.9 0.00011 3.8E-09 80.7 13.8 70 193-285 354-423 (800)
88 3e1s_A Exodeoxyribonuclease V, 97.8 7E-05 2.4E-09 79.3 10.4 64 195-282 189-252 (574)
89 2o0j_A Terminase, DNA packagin 97.0 0.0077 2.6E-07 60.3 13.8 72 195-288 163-234 (385)
90 1c4o_A DNA nucleotide excision 96.7 0.0061 2.1E-07 65.6 11.1 69 192-287 6-78 (664)
91 3lfu_A DNA helicase II; SF1 he 96.7 0.0033 1.1E-07 67.2 8.9 81 194-296 8-90 (647)
92 3cpe_A Terminase, DNA packagin 96.7 0.014 4.9E-07 61.8 13.2 73 195-289 163-235 (592)
93 3ec2_A DNA replication protein 96.6 0.008 2.7E-07 53.0 9.2 32 197-228 16-55 (180)
94 1uaa_A REP helicase, protein ( 96.2 0.0095 3.3E-07 64.1 8.8 81 195-297 2-85 (673)
95 1pjr_A PCRA; DNA repair, DNA r 96.0 0.016 5.6E-07 62.9 9.4 82 194-297 10-93 (724)
96 3vkw_A Replicase large subunit 95.6 0.0079 2.7E-07 61.1 4.4 91 213-359 163-253 (446)
97 3te6_A Regulatory protein SIR3 95.5 0.091 3.1E-06 51.0 11.4 19 210-228 44-62 (318)
98 1d2n_A N-ethylmaleimide-sensit 95.5 0.2 6.7E-06 47.0 13.6 17 212-228 65-81 (272)
99 2b8t_A Thymidine kinase; deoxy 95.4 0.012 4E-07 54.3 4.3 91 210-351 11-101 (223)
100 2z4s_A Chromosomal replication 95.3 0.16 5.4E-06 51.6 13.0 18 211-228 130-147 (440)
101 2kjq_A DNAA-related protein; s 95.2 0.015 5E-07 50.0 4.3 19 210-228 35-53 (149)
102 2orw_A Thymidine kinase; TMTK, 95.2 0.053 1.8E-06 48.2 8.1 20 211-230 3-22 (184)
103 2d7d_A Uvrabc system protein B 95.2 0.057 1.9E-06 58.0 9.6 67 195-287 12-82 (661)
104 3u4q_A ATP-dependent helicase/ 95.2 0.044 1.5E-06 63.2 9.2 72 195-286 10-81 (1232)
105 3bos_A Putative DNA replicatio 95.2 0.051 1.7E-06 49.5 8.1 19 210-228 51-69 (242)
106 2chg_A Replication factor C sm 95.1 0.19 6.5E-06 44.7 11.5 17 212-228 39-55 (226)
107 1xx6_A Thymidine kinase; NESG, 95.1 0.023 7.8E-07 51.1 5.1 22 210-231 7-28 (191)
108 2p6n_A ATP-dependent RNA helic 95.0 0.12 4E-06 46.1 9.8 70 263-345 55-128 (191)
109 1l8q_A Chromosomal replication 95.0 0.074 2.5E-06 51.4 8.9 18 211-228 37-54 (324)
110 2hjv_A ATP-dependent RNA helic 94.8 0.093 3.2E-06 45.3 8.3 71 263-346 36-110 (163)
111 2v1u_A Cell division control p 94.8 0.18 6.1E-06 49.4 11.3 29 339-367 130-159 (387)
112 3vfd_A Spastin; ATPase, microt 94.7 0.35 1.2E-05 48.1 13.3 18 211-228 148-165 (389)
113 1njg_A DNA polymerase III subu 94.5 0.32 1.1E-05 43.7 11.5 16 213-228 47-62 (250)
114 2rb4_A ATP-dependent RNA helic 94.4 0.096 3.3E-06 45.8 7.5 71 262-345 34-108 (175)
115 1fuk_A Eukaryotic initiation f 94.3 0.13 4.3E-06 44.5 8.0 72 262-346 30-105 (165)
116 3eaq_A Heat resistant RNA depe 94.3 0.24 8.2E-06 44.8 10.2 70 263-345 32-105 (212)
117 2zpa_A Uncharacterized protein 94.2 0.064 2.2E-06 57.2 6.8 102 195-365 175-277 (671)
118 1w4r_A Thymidine kinase; type 94.1 0.044 1.5E-06 49.2 4.6 17 211-227 20-36 (195)
119 2qby_B CDC6 homolog 3, cell di 94.1 0.35 1.2E-05 47.4 11.7 18 211-228 45-62 (384)
120 1t5i_A C_terminal domain of A 93.6 0.27 9.3E-06 42.8 8.8 71 263-346 32-106 (172)
121 3u61_B DNA polymerase accessor 93.5 0.23 7.8E-06 47.8 8.9 29 338-366 104-132 (324)
122 3cf0_A Transitional endoplasmi 93.5 0.18 6.1E-06 48.3 8.1 53 173-228 12-66 (301)
123 2qby_A CDC6 homolog 1, cell di 93.5 0.18 6.3E-06 49.2 8.3 18 211-228 45-62 (386)
124 2orv_A Thymidine kinase; TP4A 93.4 0.17 5.9E-06 46.6 7.2 25 210-234 18-42 (234)
125 3syl_A Protein CBBX; photosynt 93.0 0.14 4.8E-06 48.8 6.5 18 211-228 67-84 (309)
126 1a5t_A Delta prime, HOLB; zinc 92.9 0.43 1.5E-05 46.3 9.8 34 196-229 3-42 (334)
127 2jgn_A DBX, DDX3, ATP-dependen 92.8 0.16 5.4E-06 45.0 6.0 71 262-345 46-120 (185)
128 2j9r_A Thymidine kinase; TK1, 92.6 0.11 3.8E-06 47.3 4.7 40 211-273 28-67 (214)
129 1iqp_A RFCS; clamp loader, ext 92.4 1 3.5E-05 42.8 11.8 16 213-228 48-63 (327)
130 1sxj_D Activator 1 41 kDa subu 92.2 0.71 2.4E-05 44.6 10.4 17 212-228 59-75 (353)
131 3kl4_A SRP54, signal recogniti 92.1 0.37 1.3E-05 48.7 8.4 54 338-415 178-235 (433)
132 2i4i_A ATP-dependent RNA helic 92.0 0.69 2.4E-05 45.7 10.3 72 261-345 275-350 (417)
133 1sxj_E Activator 1 40 kDa subu 91.9 0.35 1.2E-05 47.0 7.8 30 338-368 133-162 (354)
134 3i32_A Heat resistant RNA depe 91.8 0.52 1.8E-05 45.2 8.8 70 263-345 29-102 (300)
135 3e2i_A Thymidine kinase; Zn-bi 91.7 0.14 4.8E-06 46.7 4.3 99 210-364 27-125 (219)
136 1fnn_A CDC6P, cell division co 91.7 0.23 7.9E-06 48.8 6.3 16 213-228 46-61 (389)
137 3eie_A Vacuolar protein sortin 91.7 0.32 1.1E-05 46.9 7.2 51 172-228 14-68 (322)
138 2r6a_A DNAB helicase, replicat 91.3 0.58 2E-05 47.6 9.0 27 209-236 201-227 (454)
139 2dr3_A UPF0273 protein PH0284; 91.3 0.6 2.1E-05 42.5 8.4 22 209-230 21-42 (247)
140 2w0m_A SSO2452; RECA, SSPF, un 91.1 0.2 6.8E-06 45.2 4.7 20 210-229 22-41 (235)
141 2qp9_X Vacuolar protein sortin 90.9 0.47 1.6E-05 46.6 7.5 18 211-228 84-101 (355)
142 3fht_A ATP-dependent RNA helic 90.8 0.61 2.1E-05 45.9 8.5 71 262-345 266-340 (412)
143 3i5x_A ATP-dependent RNA helic 90.8 1.8 6.2E-05 44.9 12.4 76 262-347 339-418 (563)
144 1jr3_A DNA polymerase III subu 90.7 1.1 3.7E-05 43.6 10.0 16 213-228 40-55 (373)
145 3pfi_A Holliday junction ATP-d 90.4 0.44 1.5E-05 46.0 6.8 17 212-228 56-72 (338)
146 1xti_A Probable ATP-dependent 90.4 0.66 2.3E-05 45.4 8.2 74 262-348 250-327 (391)
147 3pey_A ATP-dependent RNA helic 90.1 0.77 2.6E-05 44.8 8.4 76 261-349 242-321 (395)
148 2d7d_A Uvrabc system protein B 89.9 1.3 4.5E-05 47.3 10.5 94 262-368 445-542 (661)
149 1s2m_A Putative ATP-dependent 89.8 0.82 2.8E-05 44.9 8.4 71 262-345 258-332 (400)
150 1hv8_A Putative ATP-dependent 89.7 0.69 2.4E-05 44.6 7.5 73 261-346 237-313 (367)
151 2v1x_A ATP-dependent DNA helic 89.5 0.85 2.9E-05 48.1 8.5 72 261-345 266-341 (591)
152 2ehv_A Hypothetical protein PH 89.4 1.3 4.4E-05 40.3 8.8 22 209-230 28-49 (251)
153 3sqw_A ATP-dependent RNA helic 89.4 2.7 9.3E-05 43.8 12.4 76 262-347 288-367 (579)
154 1sxj_B Activator 1 37 kDa subu 89.2 0.86 2.9E-05 43.3 7.8 16 213-228 44-59 (323)
155 2q6t_A DNAB replication FORK h 89.2 0.88 3E-05 46.1 8.2 26 210-236 199-224 (444)
156 2j0s_A ATP-dependent RNA helic 89.0 1 3.5E-05 44.4 8.4 70 263-345 277-350 (410)
157 3hu3_A Transitional endoplasmi 88.9 0.67 2.3E-05 47.7 7.1 19 210-228 237-255 (489)
158 2db3_A ATP-dependent RNA helic 88.4 1.2 4.2E-05 44.7 8.6 69 264-345 302-374 (434)
159 2yjt_D ATP-dependent RNA helic 88.1 0.089 3E-06 45.8 0.0 70 263-345 31-104 (170)
160 1g5t_A COB(I)alamin adenosyltr 88.3 3.1 0.00011 37.1 10.1 26 211-236 28-53 (196)
161 1hqc_A RUVB; extended AAA-ATPa 88.2 0.92 3.2E-05 43.3 7.2 18 211-228 38-55 (324)
162 2fna_A Conserved hypothetical 87.5 15 0.0005 34.8 15.5 27 341-367 139-168 (357)
163 1oyw_A RECQ helicase, ATP-depe 87.4 1.4 4.6E-05 45.7 8.3 54 263-320 237-294 (523)
164 1c4o_A DNA nucleotide excision 86.9 1.7 6E-05 46.4 9.0 76 262-350 439-518 (664)
165 4a1f_A DNAB helicase, replicat 86.9 0.62 2.1E-05 45.5 5.0 27 209-236 44-70 (338)
166 2z43_A DNA repair and recombin 86.4 2 7E-05 41.3 8.5 21 210-230 106-126 (324)
167 3bh0_A DNAB-like replicative h 86.3 1.6 5.3E-05 42.0 7.5 22 209-230 66-87 (315)
168 2zts_A Putative uncharacterize 85.9 0.59 2E-05 42.6 4.1 25 210-234 29-53 (251)
169 1yks_A Genome polyprotein [con 85.8 0.75 2.6E-05 46.5 5.3 68 263-344 178-245 (440)
170 1nlf_A Regulatory protein REPA 85.8 3.2 0.00011 38.8 9.4 23 209-231 28-50 (279)
171 3n70_A Transport activator; si 85.8 0.56 1.9E-05 39.4 3.6 20 209-228 22-41 (145)
172 2gno_A DNA polymerase III, gam 85.3 3.3 0.00011 39.6 9.3 22 207-228 12-35 (305)
173 3co5_A Putative two-component 85.2 0.57 1.9E-05 39.3 3.4 20 209-228 25-44 (143)
174 2oap_1 GSPE-2, type II secreti 85.1 0.8 2.7E-05 47.4 5.1 40 186-227 237-276 (511)
175 2eyq_A TRCF, transcription-rep 84.6 1.3 4.4E-05 50.6 6.9 92 262-368 812-907 (1151)
176 1w5s_A Origin recognition comp 84.4 4.6 0.00016 39.6 10.2 18 211-228 50-69 (412)
177 1wp9_A ATP-dependent RNA helic 84.1 1.6 5.6E-05 43.4 6.8 74 262-348 361-446 (494)
178 3hjh_A Transcription-repair-co 83.7 3.5 0.00012 42.1 9.2 51 210-286 13-63 (483)
179 3dm5_A SRP54, signal recogniti 83.4 4.4 0.00015 40.9 9.5 18 212-229 101-118 (443)
180 2i1q_A DNA repair and recombin 82.3 4 0.00014 39.0 8.5 23 210-232 97-119 (322)
181 2v6i_A RNA helicase; membrane, 81.8 1.6 5.6E-05 43.8 5.8 54 263-320 172-225 (431)
182 2xau_A PRE-mRNA-splicing facto 80.9 3.9 0.00014 44.4 8.7 75 262-345 303-393 (773)
183 3cmu_A Protein RECA, recombina 80.9 0.92 3.2E-05 54.2 3.9 26 210-235 1426-1451(2050)
184 1e9r_A Conjugal transfer prote 79.2 1.8 6E-05 43.5 4.9 26 211-237 53-78 (437)
185 3rc3_A ATP-dependent RNA helic 78.9 4 0.00014 43.7 7.8 73 264-350 322-400 (677)
186 2z0m_A 337AA long hypothetical 78.8 3.6 0.00012 38.9 6.8 69 261-346 219-291 (337)
187 2wv9_A Flavivirin protease NS2 78.0 1.9 6.7E-05 46.1 5.0 68 262-344 410-478 (673)
188 1v5w_A DMC1, meiotic recombina 78.0 2.6 8.9E-05 41.0 5.6 20 210-229 121-140 (343)
189 3tbk_A RIG-I helicase domain; 77.6 4.8 0.00016 41.1 7.8 75 262-345 389-476 (555)
190 2w58_A DNAI, primosome compone 77.6 2 6.7E-05 37.8 4.2 17 212-228 55-71 (202)
191 3eiq_A Eukaryotic initiation f 77.5 1 3.5E-05 44.4 2.5 71 262-345 280-354 (414)
192 1qvr_A CLPB protein; coiled co 77.1 2.5 8.7E-05 46.5 5.8 18 211-228 191-208 (854)
193 3fmp_B ATP-dependent RNA helic 77.0 0.49 1.7E-05 48.2 0.0 70 262-344 333-406 (479)
194 2whx_A Serine protease/ntpase/ 76.4 4.1 0.00014 43.0 7.0 67 263-343 356-422 (618)
195 3cmu_A Protein RECA, recombina 75.5 2.8 9.5E-05 50.2 5.7 28 209-236 1079-1106(2050)
196 1tue_A Replication protein E1; 75.2 4.4 0.00015 36.5 5.7 52 182-236 28-82 (212)
197 1w36_B RECB, exodeoxyribonucle 74.9 5.1 0.00017 45.8 7.6 63 213-286 18-80 (1180)
198 2gza_A Type IV secretion syste 74.7 2.3 7.9E-05 41.7 4.2 25 204-228 168-192 (361)
199 2ffh_A Protein (FFH); SRP54, s 74.6 11 0.00038 37.7 9.3 19 211-229 98-116 (425)
200 4b4t_M 26S protease regulatory 73.8 1.6 5.5E-05 44.0 2.8 54 171-228 176-232 (434)
201 2bjv_A PSP operon transcriptio 73.4 2.2 7.5E-05 39.4 3.5 20 209-228 27-46 (265)
202 4gl2_A Interferon-induced heli 73.2 1.2 4.1E-05 47.5 1.9 74 262-344 400-487 (699)
203 2qgz_A Helicase loader, putati 72.5 3.7 0.00013 39.2 4.9 19 211-229 152-170 (308)
204 1u0j_A DNA replication protein 71.8 7.9 0.00027 36.2 6.9 44 183-229 74-122 (267)
205 4ag6_A VIRB4 ATPase, type IV s 71.6 3.4 0.00012 40.8 4.6 22 210-231 34-55 (392)
206 1jbk_A CLPB protein; beta barr 71.6 2.3 7.8E-05 36.3 3.0 18 211-228 43-60 (195)
207 2jlq_A Serine protease subunit 71.4 3.2 0.00011 41.9 4.5 67 264-344 190-256 (451)
208 2oca_A DAR protein, ATP-depend 71.4 12 0.00041 38.0 8.9 74 264-349 349-426 (510)
209 4etp_A Kinesin-like protein KA 71.3 4.5 0.00015 40.4 5.4 25 203-228 132-158 (403)
210 2eyu_A Twitching motility prot 71.3 1.9 6.5E-05 40.3 2.5 20 209-228 23-42 (261)
211 1ry6_A Internal kinesin; kines 71.0 2.8 9.4E-05 41.2 3.7 23 206-228 78-102 (360)
212 3lda_A DNA repair protein RAD5 71.0 4.7 0.00016 40.2 5.4 21 210-230 177-197 (400)
213 3h4m_A Proteasome-activating n 70.7 2.6 9E-05 39.2 3.4 53 173-228 14-68 (285)
214 2va8_A SSO2462, SKI2-type heli 70.3 7.8 0.00027 41.4 7.5 75 263-346 253-363 (715)
215 2pt7_A CAG-ALFA; ATPase, prote 69.7 3 0.0001 40.3 3.6 24 204-227 164-187 (330)
216 3nwn_A Kinesin-like protein KI 69.4 3.2 0.00011 40.7 3.8 25 203-228 96-122 (359)
217 1kgd_A CASK, peripheral plasma 69.2 2.9 9.8E-05 36.3 3.1 19 210-228 4-22 (180)
218 1ls1_A Signal recognition part 69.1 13 0.00045 35.0 8.0 19 211-229 98-116 (295)
219 2ykg_A Probable ATP-dependent 69.0 2.6 8.8E-05 44.9 3.3 76 261-345 397-485 (696)
220 2p65_A Hypothetical protein PF 68.8 2.1 7.1E-05 36.5 2.1 18 211-228 43-60 (187)
221 1lvg_A Guanylate kinase, GMP k 68.5 2.8 9.7E-05 37.0 3.0 19 210-228 3-21 (198)
222 1p9r_A General secretion pathw 68.1 4.5 0.00015 40.5 4.6 28 200-227 155-183 (418)
223 3b85_A Phosphate starvation-in 67.9 6.7 0.00023 35.1 5.3 31 197-228 9-39 (208)
224 1bg2_A Kinesin; motor protein, 67.7 3.8 0.00013 39.6 3.9 24 204-228 70-95 (325)
225 3dc4_A Kinesin-like protein NO 67.2 3.6 0.00012 40.1 3.6 24 204-228 87-112 (344)
226 3tau_A Guanylate kinase, GMP k 67.0 3.3 0.00011 36.9 3.1 19 210-228 7-25 (208)
227 1fuu_A Yeast initiation factor 67.0 1.2 4E-05 43.6 0.0 71 262-345 259-333 (394)
228 3vaa_A Shikimate kinase, SK; s 67.0 3.3 0.00011 36.4 3.1 21 209-229 23-43 (199)
229 1ofh_A ATP-dependent HSL prote 66.5 14 0.00048 34.3 7.7 18 211-228 50-67 (310)
230 2zfi_A Kinesin-like protein KI 66.5 4.1 0.00014 40.0 3.9 25 203-228 81-107 (366)
231 2h58_A Kinesin-like protein KI 66.4 4.2 0.00014 39.4 3.9 25 203-228 72-98 (330)
232 4b4t_J 26S protease regulatory 66.3 2.5 8.6E-05 42.1 2.3 55 171-228 143-199 (405)
233 2vvg_A Kinesin-2; motor protei 66.1 4.3 0.00015 39.7 3.9 24 204-228 82-107 (350)
234 1t5c_A CENP-E protein, centrom 66.0 4.1 0.00014 39.8 3.8 24 204-228 70-95 (349)
235 1v8k_A Kinesin-like protein KI 66.0 4.1 0.00014 40.7 3.8 25 203-228 146-172 (410)
236 2y65_A Kinesin, kinesin heavy 65.9 4.2 0.00014 40.0 3.8 24 204-228 77-102 (365)
237 3b6u_A Kinesin-like protein KI 65.8 4.2 0.00014 40.1 3.8 24 204-228 94-119 (372)
238 1ojl_A Transcriptional regulat 65.7 3.6 0.00012 39.2 3.2 20 209-228 23-42 (304)
239 1x88_A Kinesin-like protein KI 65.7 4 0.00014 40.0 3.6 25 203-228 80-106 (359)
240 2nr8_A Kinesin-like protein KI 65.7 4.2 0.00014 39.8 3.8 25 203-228 95-121 (358)
241 3a8t_A Adenylate isopentenyltr 65.6 3.1 0.00011 40.4 2.8 19 211-229 40-58 (339)
242 3gbj_A KIF13B protein; kinesin 65.6 4.2 0.00014 39.8 3.7 25 203-228 84-110 (354)
243 4a14_A Kinesin, kinesin-like p 65.3 4.4 0.00015 39.5 3.8 24 204-228 76-101 (344)
244 3cob_A Kinesin heavy chain-lik 65.1 3.8 0.00013 40.3 3.3 25 203-228 71-97 (369)
245 3exa_A TRNA delta(2)-isopenten 65.1 3.2 0.00011 40.0 2.7 18 212-229 4-21 (322)
246 3bgw_A DNAB-like replicative h 65.0 5 0.00017 40.5 4.3 25 209-233 195-219 (444)
247 3foz_A TRNA delta(2)-isopenten 65.0 3.2 0.00011 39.8 2.7 16 213-228 12-27 (316)
248 3u06_A Protein claret segregat 65.0 4.1 0.00014 40.7 3.6 25 203-228 130-156 (412)
249 3trf_A Shikimate kinase, SK; a 64.8 3.9 0.00013 35.2 3.0 19 211-229 5-23 (185)
250 1goj_A Kinesin, kinesin heavy 64.7 4.3 0.00015 39.8 3.6 24 204-228 73-98 (355)
251 2wbe_C Bipolar kinesin KRP-130 64.5 4.4 0.00015 40.0 3.6 24 204-228 93-118 (373)
252 3lre_A Kinesin-like protein KI 64.4 4.3 0.00015 39.7 3.5 24 204-228 98-123 (355)
253 3mwy_W Chromo domain-containin 64.3 52 0.0018 35.6 12.6 76 262-349 572-653 (800)
254 3lw7_A Adenylate kinase relate 64.2 2.9 0.0001 35.2 2.1 16 213-228 3-18 (179)
255 2j41_A Guanylate kinase; GMP, 63.6 4.1 0.00014 35.7 3.0 20 209-228 4-23 (207)
256 2qz4_A Paraplegin; AAA+, SPG7, 63.6 3.9 0.00013 37.3 3.0 19 210-228 38-56 (262)
257 2owm_A Nckin3-434, related to 63.5 5 0.00017 40.5 3.9 25 203-228 128-154 (443)
258 2qmh_A HPR kinase/phosphorylas 63.5 3.7 0.00013 36.8 2.6 19 210-228 33-51 (205)
259 2ze6_A Isopentenyl transferase 63.4 3.7 0.00013 37.9 2.7 16 213-228 3-18 (253)
260 1zu4_A FTSY; GTPase, signal re 63.4 22 0.00075 34.0 8.4 19 211-229 105-123 (320)
261 2r44_A Uncharacterized protein 63.4 3.2 0.00011 39.7 2.4 20 209-228 44-63 (331)
262 3jvv_A Twitching mobility prot 63.4 3.6 0.00012 40.3 2.8 19 209-227 121-139 (356)
263 3o8b_A HCV NS3 protease/helica 63.1 6 0.0002 42.1 4.6 53 261-320 395-447 (666)
264 3b9p_A CG5977-PA, isoform A; A 63.0 3.9 0.00013 38.3 2.9 18 211-228 54-71 (297)
265 2heh_A KIF2C protein; kinesin, 63.0 5 0.00017 39.7 3.7 25 203-228 126-152 (387)
266 3tr0_A Guanylate kinase, GMP k 62.8 4.4 0.00015 35.4 3.1 20 209-228 5-24 (205)
267 3hws_A ATP-dependent CLP prote 62.7 4.1 0.00014 39.6 3.1 18 211-228 51-68 (363)
268 3oiy_A Reverse gyrase helicase 62.6 5.2 0.00018 39.5 3.8 67 263-345 253-326 (414)
269 4b4t_L 26S protease subunit RP 62.4 2.9 9.8E-05 42.2 1.9 55 171-228 176-232 (437)
270 3uk6_A RUVB-like 2; hexameric 62.4 3.9 0.00013 39.6 2.9 18 211-228 70-87 (368)
271 3t0q_A AGR253WP; kinesin, alph 62.3 4.1 0.00014 39.8 2.9 25 203-228 77-103 (349)
272 3nbx_X ATPase RAVA; AAA+ ATPas 62.0 4.8 0.00016 41.4 3.5 27 201-228 32-58 (500)
273 2ewv_A Twitching motility prot 61.9 3.6 0.00012 40.5 2.5 20 209-228 134-153 (372)
274 1kag_A SKI, shikimate kinase I 61.9 5 0.00017 34.0 3.2 19 210-228 3-21 (173)
275 3bfn_A Kinesin-like protein KI 61.8 4 0.00014 40.4 2.8 23 205-228 92-116 (388)
276 2ius_A DNA translocase FTSK; n 61.7 11 0.00038 38.7 6.2 27 210-236 166-192 (512)
277 1qhx_A CPT, protein (chloramph 61.7 3.8 0.00013 35.0 2.4 18 211-228 3-20 (178)
278 3iij_A Coilin-interacting nucl 61.7 5.1 0.00017 34.4 3.2 20 210-229 10-29 (180)
279 2p6r_A Afuhel308 helicase; pro 61.6 11 0.00038 40.2 6.5 74 263-345 243-346 (702)
280 3mm4_A Histidine kinase homolo 61.2 71 0.0024 27.6 10.9 65 211-285 20-84 (206)
281 1vma_A Cell division protein F 61.1 26 0.0009 33.2 8.4 19 211-229 104-122 (306)
282 3ney_A 55 kDa erythrocyte memb 60.9 5.1 0.00018 35.7 3.1 19 210-228 18-36 (197)
283 1lv7_A FTSH; alpha/beta domain 60.8 3.8 0.00013 37.5 2.4 18 211-228 45-62 (257)
284 4a2p_A RIG-I, retinoic acid in 60.7 5.1 0.00018 41.0 3.5 75 262-345 390-477 (556)
285 1z6g_A Guanylate kinase; struc 60.7 5.2 0.00018 35.9 3.2 20 209-228 21-40 (218)
286 3cmw_A Protein RECA, recombina 60.4 8.2 0.00028 45.5 5.4 93 211-353 1431-1523(1706)
287 3a00_A Guanylate kinase, GMP k 60.4 5.2 0.00018 34.7 3.1 17 212-228 2-18 (186)
288 1zp6_A Hypothetical protein AT 60.3 4.2 0.00014 35.2 2.4 20 209-228 7-26 (191)
289 2zj8_A DNA helicase, putative 60.1 15 0.00052 39.2 7.3 73 263-344 238-343 (720)
290 1f9v_A Kinesin-like protein KA 60.0 3.8 0.00013 40.0 2.3 25 203-228 76-102 (347)
291 4gp7_A Metallophosphoesterase; 59.7 3.7 0.00012 35.3 1.9 20 210-229 8-27 (171)
292 1xp8_A RECA protein, recombina 59.6 6.5 0.00022 38.6 3.9 26 210-236 73-98 (366)
293 1ex7_A Guanylate kinase; subst 59.6 4 0.00014 36.0 2.1 16 212-227 2-17 (186)
294 2z83_A Helicase/nucleoside tri 59.5 4.7 0.00016 40.8 3.0 54 263-320 191-244 (459)
295 2qor_A Guanylate kinase; phosp 59.4 5.7 0.00019 35.0 3.2 19 210-228 11-29 (204)
296 3crm_A TRNA delta(2)-isopenten 58.9 4.8 0.00016 38.8 2.7 17 212-228 6-22 (323)
297 1s96_A Guanylate kinase, GMP k 58.7 5.7 0.00019 35.9 3.1 20 209-228 14-33 (219)
298 1u94_A RECA protein, recombina 58.6 7.1 0.00024 38.1 4.0 22 210-231 62-83 (356)
299 1ly1_A Polynucleotide kinase; 58.6 4.2 0.00014 34.6 2.1 16 213-228 4-19 (181)
300 2iut_A DNA translocase FTSK; n 58.3 13 0.00045 38.7 6.1 26 211-236 214-239 (574)
301 2rep_A Kinesin-like protein KI 58.2 4.7 0.00016 39.8 2.6 25 203-228 107-133 (376)
302 1in4_A RUVB, holliday junction 58.2 7.7 0.00026 37.3 4.1 17 212-228 52-68 (334)
303 1sxj_C Activator 1 40 kDa subu 58.1 10 0.00035 36.3 5.0 22 208-229 41-64 (340)
304 1y63_A LMAJ004144AAA protein; 57.9 6.1 0.00021 34.2 3.1 19 210-228 9-27 (184)
305 1xwi_A SKD1 protein; VPS4B, AA 57.8 5.4 0.00018 38.2 2.9 51 172-228 8-62 (322)
306 2c95_A Adenylate kinase 1; tra 57.5 8 0.00027 33.4 3.8 20 209-228 7-26 (196)
307 1znw_A Guanylate kinase, GMP k 57.3 6.3 0.00022 34.8 3.1 20 209-228 18-37 (207)
308 1um8_A ATP-dependent CLP prote 57.2 6 0.0002 38.6 3.2 18 211-228 72-89 (376)
309 3vkg_A Dynein heavy chain, cyt 56.9 12 0.0004 47.0 6.1 48 181-229 874-924 (3245)
310 3d3q_A TRNA delta(2)-isopenten 56.9 5.5 0.00019 38.7 2.8 16 213-228 9-24 (340)
311 3dmq_A RNA polymerase-associat 56.8 21 0.00073 39.7 7.9 91 262-369 503-599 (968)
312 2zr9_A Protein RECA, recombina 56.7 9.3 0.00032 37.1 4.4 21 210-230 60-80 (349)
313 4eun_A Thermoresistant glucoki 56.5 6.6 0.00023 34.5 3.1 19 210-228 28-46 (200)
314 3t15_A Ribulose bisphosphate c 56.3 5.4 0.00018 37.7 2.6 17 212-228 37-53 (293)
315 2c9o_A RUVB-like 1; hexameric 55.9 6 0.0002 40.0 3.0 19 211-229 63-81 (456)
316 1kht_A Adenylate kinase; phosp 55.9 5.4 0.00019 34.3 2.4 18 211-228 3-20 (192)
317 1g8p_A Magnesium-chelatase 38 55.8 5.4 0.00019 38.1 2.6 18 211-228 45-62 (350)
318 4b4t_I 26S protease regulatory 55.8 7.9 0.00027 38.9 3.7 54 171-228 177-233 (437)
319 4akg_A Glutathione S-transfera 55.7 14 0.00048 45.7 6.5 48 181-229 891-941 (2695)
320 4a2w_A RIG-I, retinoic acid in 55.6 8.9 0.0003 42.6 4.5 77 260-345 629-718 (936)
321 3fho_A ATP-dependent RNA helic 55.4 2.5 8.5E-05 43.4 0.0 71 262-345 357-431 (508)
322 3hr8_A Protein RECA; alpha and 55.4 7.5 0.00026 38.0 3.5 26 210-236 60-85 (356)
323 4b4t_H 26S protease regulatory 55.3 6.8 0.00023 39.7 3.2 55 171-228 204-260 (467)
324 3kb2_A SPBC2 prophage-derived 55.3 6.4 0.00022 33.1 2.7 17 213-229 3-19 (173)
325 2r2a_A Uncharacterized protein 55.1 7.3 0.00025 34.6 3.1 18 213-230 7-24 (199)
326 2cvh_A DNA repair and recombin 55.0 6 0.00021 34.9 2.6 21 210-230 19-39 (220)
327 1j8m_F SRP54, signal recogniti 54.7 30 0.001 32.6 7.6 20 211-230 98-117 (297)
328 1knq_A Gluconate kinase; ALFA/ 54.6 6.3 0.00021 33.6 2.5 18 211-228 8-25 (175)
329 3eph_A TRNA isopentenyltransfe 54.4 5.9 0.0002 39.5 2.5 20 348-367 209-228 (409)
330 4akg_A Glutathione S-transfera 54.3 7.3 0.00025 48.1 3.8 27 202-228 1258-1284(2695)
331 3cm0_A Adenylate kinase; ATP-b 54.2 5.4 0.00018 34.3 2.0 20 210-229 3-22 (186)
332 1ixz_A ATP-dependent metallopr 54.1 6.6 0.00023 35.8 2.7 17 212-228 50-66 (254)
333 3d8b_A Fidgetin-like protein 1 54.0 6.9 0.00023 38.1 3.0 19 210-228 116-134 (357)
334 4fcw_A Chaperone protein CLPB; 53.7 6.4 0.00022 36.9 2.6 17 212-228 48-64 (311)
335 1tf5_A Preprotein translocase 53.3 27 0.00093 38.0 7.7 53 264-320 434-488 (844)
336 3lnc_A Guanylate kinase, GMP k 52.5 6.6 0.00023 35.3 2.4 20 209-228 25-44 (231)
337 1z5z_A Helicase of the SNF2/RA 51.8 52 0.0018 30.4 8.6 72 263-346 113-190 (271)
338 1f2t_A RAD50 ABC-ATPase; DNA d 51.7 6.6 0.00022 33.0 2.1 15 213-227 25-39 (149)
339 2r62_A Cell division protease 51.6 4.3 0.00015 37.4 1.0 18 211-228 44-61 (268)
340 4b4t_K 26S protease regulatory 51.5 6.3 0.00021 39.6 2.2 53 172-228 168-223 (428)
341 2bwj_A Adenylate kinase 5; pho 51.5 10 0.00036 32.7 3.5 19 210-228 11-29 (199)
342 3k1j_A LON protease, ATP-depen 51.5 11 0.00039 39.4 4.4 23 206-228 55-77 (604)
343 3h1t_A Type I site-specific re 51.4 27 0.00092 36.2 7.2 93 262-368 439-541 (590)
344 2xxa_A Signal recognition part 51.2 31 0.0011 34.5 7.4 19 212-230 101-119 (433)
345 2i3b_A HCR-ntpase, human cance 51.1 4.6 0.00016 35.6 1.0 29 337-365 103-133 (189)
346 1gvn_B Zeta; postsegregational 51.0 6.4 0.00022 37.1 2.1 17 212-228 34-50 (287)
347 2bdt_A BH3686; alpha-beta prot 51.0 8.3 0.00028 33.3 2.8 18 212-229 3-20 (189)
348 3uie_A Adenylyl-sulfate kinase 51.0 7.8 0.00027 34.0 2.6 32 195-228 11-42 (200)
349 3qf7_A RAD50; ABC-ATPase, ATPa 51.0 6.3 0.00021 38.6 2.1 16 213-228 25-40 (365)
350 3t61_A Gluconokinase; PSI-biol 50.9 8.2 0.00028 33.8 2.7 17 212-228 19-35 (202)
351 1n0w_A DNA repair protein RAD5 50.9 9.8 0.00034 34.0 3.3 23 210-232 23-45 (243)
352 1tf7_A KAIC; homohexamer, hexa 50.8 58 0.002 33.2 9.6 21 209-229 279-299 (525)
353 3kta_A Chromosome segregation 50.7 8.6 0.00029 32.9 2.8 16 213-228 28-43 (182)
354 4a74_A DNA repair and recombin 50.6 6.1 0.00021 35.1 1.8 21 209-229 23-43 (231)
355 1np6_A Molybdopterin-guanine d 49.9 11 0.00037 32.7 3.3 16 212-227 7-22 (174)
356 3c8u_A Fructokinase; YP_612366 49.6 8.4 0.00029 34.0 2.6 18 210-227 21-38 (208)
357 3io5_A Recombination and repai 49.5 14 0.00048 35.6 4.2 23 213-236 30-52 (333)
358 1cr0_A DNA primase/helicase; R 49.5 9.8 0.00034 35.6 3.2 21 209-229 33-53 (296)
359 3tif_A Uncharacterized ABC tra 49.3 6.8 0.00023 35.7 1.9 32 337-368 161-192 (235)
360 1iy2_A ATP-dependent metallopr 49.0 8.8 0.0003 35.6 2.7 17 212-228 74-90 (278)
361 1gku_B Reverse gyrase, TOP-RG; 48.9 16 0.00054 41.2 5.2 74 262-349 275-352 (1054)
362 3nzo_A UDP-N-acetylglucosamine 48.8 1.2E+02 0.0042 29.4 11.4 87 203-318 28-118 (399)
363 3pvs_A Replication-associated 48.7 12 0.00043 37.6 4.0 17 212-228 51-67 (447)
364 2zan_A Vacuolar protein sortin 48.6 9.2 0.00031 38.5 3.0 54 172-228 130-184 (444)
365 2r2a_A Uncharacterized protein 48.6 5.5 0.00019 35.5 1.2 13 340-352 88-100 (199)
366 2chq_A Replication factor C sm 48.5 12 0.00042 34.9 3.7 16 213-228 40-55 (319)
367 2v54_A DTMP kinase, thymidylat 48.5 7.2 0.00025 34.0 1.9 19 210-228 3-21 (204)
368 1zuh_A Shikimate kinase; alpha 48.3 10 0.00035 31.9 2.9 19 211-229 7-25 (168)
369 2rhm_A Putative kinase; P-loop 48.1 9.4 0.00032 32.8 2.6 18 211-228 5-22 (193)
370 1ye8_A Protein THEP1, hypothet 48.0 9.9 0.00034 32.9 2.7 16 213-228 2-17 (178)
371 1tev_A UMP-CMP kinase; ploop, 47.9 9.9 0.00034 32.6 2.7 19 211-229 3-21 (196)
372 1cke_A CK, MSSA, protein (cyti 47.8 10 0.00035 33.6 2.9 19 211-229 5-23 (227)
373 4a2q_A RIG-I, retinoic acid in 47.8 13 0.00045 40.3 4.3 76 261-345 630-718 (797)
374 3u4q_B ATP-dependent helicase/ 47.7 11 0.00039 42.8 3.9 48 215-283 5-52 (1166)
375 1m7g_A Adenylylsulfate kinase; 47.7 10 0.00035 33.5 2.8 31 196-228 12-42 (211)
376 4ddu_A Reverse gyrase; topoiso 47.5 14 0.00048 41.8 4.5 76 263-349 310-387 (1104)
377 2v9p_A Replication protein E1; 47.4 9.4 0.00032 36.4 2.7 20 209-228 124-143 (305)
378 2x8a_A Nuclear valosin-contain 47.3 9.7 0.00033 35.5 2.7 53 173-228 7-61 (274)
379 1xjc_A MOBB protein homolog; s 47.1 13 0.00044 32.1 3.3 15 213-227 6-20 (169)
380 2i3b_A HCR-ntpase, human cance 47.1 12 0.0004 32.9 3.1 18 211-228 1-18 (189)
381 1zd8_A GTP:AMP phosphotransfer 47.1 11 0.00036 33.8 2.9 19 210-228 6-24 (227)
382 1g8x_A Myosin II heavy chain f 46.9 29 0.001 38.7 6.9 56 174-229 128-190 (1010)
383 4f4c_A Multidrug resistance pr 46.9 39 0.0013 39.0 8.1 120 208-401 441-610 (1321)
384 4h1g_A Maltose binding protein 46.5 12 0.00039 40.3 3.5 25 203-228 454-480 (715)
385 2bbw_A Adenylate kinase 4, AK4 46.4 12 0.0004 34.0 3.1 19 210-228 26-44 (246)
386 3vkg_A Dynein heavy chain, cyt 46.3 10 0.00035 47.5 3.3 27 201-227 1294-1320(3245)
387 2r8r_A Sensor protein; KDPD, P 46.2 16 0.00056 33.2 4.0 21 213-233 8-28 (228)
388 3asz_A Uridine kinase; cytidin 46.1 9.8 0.00034 33.4 2.5 19 210-228 5-23 (211)
389 3auy_A DNA double-strand break 46.1 7.9 0.00027 37.8 2.0 16 213-228 27-42 (371)
390 3fb4_A Adenylate kinase; psych 46.1 11 0.00037 33.3 2.8 17 213-229 2-18 (216)
391 2px0_A Flagellar biosynthesis 45.7 13 0.00045 35.1 3.4 21 210-230 104-124 (296)
392 1qf9_A UMP/CMP kinase, protein 45.6 11 0.00037 32.3 2.6 16 213-228 8-23 (194)
393 1nks_A Adenylate kinase; therm 45.4 11 0.00037 32.3 2.6 16 213-228 3-18 (194)
394 1via_A Shikimate kinase; struc 45.4 12 0.00042 31.7 2.9 16 213-228 6-21 (175)
395 1sxj_A Activator 1 95 kDa subu 45.3 11 0.00037 38.7 3.0 19 211-229 77-95 (516)
396 2iyv_A Shikimate kinase, SK; t 44.8 14 0.00047 31.6 3.1 17 212-228 3-19 (184)
397 2yvu_A Probable adenylyl-sulfa 44.5 11 0.00039 32.3 2.6 20 210-229 12-31 (186)
398 1aky_A Adenylate kinase; ATP:A 44.4 13 0.00045 32.9 3.1 18 211-228 4-21 (220)
399 2j37_W Signal recognition part 44.4 53 0.0018 33.5 7.9 18 213-230 103-120 (504)
400 3dl0_A Adenylate kinase; phosp 44.4 12 0.00041 33.0 2.8 17 213-229 2-18 (216)
401 3nwj_A ATSK2; P loop, shikimat 44.3 13 0.00046 34.2 3.1 20 210-229 47-66 (250)
402 2pez_A Bifunctional 3'-phospho 44.2 12 0.0004 32.0 2.6 19 210-228 4-22 (179)
403 1zak_A Adenylate kinase; ATP:A 44.0 13 0.00045 33.0 3.0 19 211-229 5-23 (222)
404 1e6c_A Shikimate kinase; phosp 43.9 13 0.00043 31.3 2.7 17 212-228 3-19 (173)
405 2qen_A Walker-type ATPase; unk 43.6 18 0.00061 34.1 4.1 28 200-227 20-47 (350)
406 2cbz_A Multidrug resistance-as 43.0 11 0.00036 34.4 2.2 28 337-364 143-170 (237)
407 4e22_A Cytidylate kinase; P-lo 42.9 11 0.00038 34.5 2.3 21 209-229 25-45 (252)
408 1ukz_A Uridylate kinase; trans 42.8 13 0.00045 32.3 2.8 17 212-228 16-32 (203)
409 3a4m_A L-seryl-tRNA(SEC) kinas 42.6 10 0.00036 34.9 2.1 18 211-228 4-21 (260)
410 3pxg_A Negative regulator of g 42.5 13 0.00046 37.5 3.1 19 210-228 200-218 (468)
411 2qt1_A Nicotinamide riboside k 42.4 12 0.00042 32.8 2.5 19 210-228 20-38 (207)
412 2w00_A HSDR, R.ECOR124I; ATP-b 42.3 65 0.0022 36.1 8.8 25 262-286 537-561 (1038)
413 2jaq_A Deoxyguanosine kinase; 42.3 13 0.00046 32.0 2.7 16 213-228 2-17 (205)
414 1rj9_A FTSY, signal recognitio 42.0 14 0.00048 35.1 3.0 18 211-228 102-119 (304)
415 2cdn_A Adenylate kinase; phosp 42.0 15 0.00053 31.9 3.1 18 211-228 20-37 (201)
416 1ak2_A Adenylate kinase isoenz 41.9 15 0.00052 32.9 3.1 20 210-229 15-34 (233)
417 2if2_A Dephospho-COA kinase; a 41.8 13 0.00045 32.3 2.6 16 213-228 3-18 (204)
418 1sgw_A Putative ABC transporte 41.6 12 0.0004 33.7 2.2 32 337-368 149-180 (214)
419 2pcj_A ABC transporter, lipopr 41.6 9.7 0.00033 34.4 1.7 32 337-368 156-187 (224)
420 2vli_A Antibiotic resistance p 41.3 10 0.00036 32.2 1.8 19 211-229 5-23 (183)
421 1g41_A Heat shock protein HSLU 41.3 15 0.00052 37.0 3.2 18 211-228 50-67 (444)
422 1g6h_A High-affinity branched- 41.2 10 0.00036 34.9 1.9 32 337-368 169-200 (257)
423 2ghi_A Transport protein; mult 41.0 12 0.0004 34.7 2.2 31 338-368 172-202 (260)
424 1ji0_A ABC transporter; ATP bi 40.8 11 0.00037 34.5 1.9 32 337-368 155-186 (240)
425 1lkx_A Myosin IE heavy chain; 40.6 27 0.00091 37.3 5.1 32 197-228 78-111 (697)
426 3f9v_A Minichromosome maintena 40.6 11 0.00036 39.7 2.0 15 213-227 329-343 (595)
427 2ff7_A Alpha-hemolysin translo 40.5 12 0.00041 34.4 2.1 31 337-367 161-191 (247)
428 2pze_A Cystic fibrosis transme 40.5 12 0.00041 33.9 2.1 20 209-228 32-51 (229)
429 2pt5_A Shikimate kinase, SK; a 40.4 15 0.00052 30.7 2.7 16 213-228 2-17 (168)
430 1i84_S Smooth muscle myosin he 40.2 28 0.00097 39.6 5.6 55 174-228 125-186 (1184)
431 3gfo_A Cobalt import ATP-bindi 40.2 12 0.0004 35.1 2.1 32 337-368 159-190 (275)
432 1jjv_A Dephospho-COA kinase; P 40.2 15 0.00052 32.0 2.7 16 213-228 4-19 (206)
433 1b0u_A Histidine permease; ABC 40.1 11 0.00038 34.9 1.9 32 337-368 169-200 (262)
434 2zu0_C Probable ATP-dependent 40.0 14 0.00047 34.4 2.5 31 338-368 181-211 (267)
435 3b9q_A Chloroplast SRP recepto 40.0 14 0.00047 35.1 2.5 20 210-229 99-118 (302)
436 2plr_A DTMP kinase, probable t 39.9 15 0.0005 32.0 2.6 18 211-228 4-21 (213)
437 2wwf_A Thymidilate kinase, put 39.8 16 0.00056 31.8 2.9 19 210-228 9-27 (212)
438 2z0h_A DTMP kinase, thymidylat 39.7 13 0.00044 32.0 2.1 16 214-229 3-18 (197)
439 2d2e_A SUFC protein; ABC-ATPas 39.7 14 0.00048 33.9 2.5 31 338-368 160-190 (250)
440 3qks_A DNA double-strand break 39.7 17 0.00057 32.2 2.9 16 213-228 25-40 (203)
441 3m6a_A ATP-dependent protease 39.6 15 0.00052 37.9 3.0 19 210-228 107-125 (543)
442 2pbr_A DTMP kinase, thymidylat 39.4 16 0.00055 31.2 2.7 15 214-228 3-17 (195)
443 1htw_A HI0065; nucleotide-bind 39.3 14 0.00046 31.4 2.2 19 209-227 31-49 (158)
444 1tf7_A KAIC; homohexamer, hexa 39.3 17 0.00059 37.3 3.3 28 210-237 38-65 (525)
445 2ce7_A Cell division protein F 39.3 13 0.00044 37.9 2.3 17 212-228 50-66 (476)
446 1nn5_A Similar to deoxythymidy 38.9 18 0.0006 31.6 3.0 20 210-229 8-27 (215)
447 1e4v_A Adenylate kinase; trans 38.8 16 0.00054 32.3 2.6 16 213-228 2-17 (214)
448 4g1u_C Hemin import ATP-bindin 38.7 13 0.00044 34.6 2.1 30 339-368 165-194 (266)
449 1mv5_A LMRA, multidrug resista 38.7 11 0.00039 34.4 1.7 31 338-368 156-186 (243)
450 1rz3_A Hypothetical protein rb 38.5 16 0.00055 32.0 2.6 18 211-228 22-39 (201)
451 3be4_A Adenylate kinase; malar 38.4 18 0.00061 32.0 3.0 18 211-228 5-22 (217)
452 2f1r_A Molybdopterin-guanine d 38.4 8.4 0.00029 33.3 0.7 16 213-228 4-19 (171)
453 3sr0_A Adenylate kinase; phosp 38.3 17 0.00058 32.3 2.8 17 213-229 2-18 (206)
454 2nq2_C Hypothetical ABC transp 38.3 12 0.00041 34.5 1.8 32 337-368 144-175 (253)
455 2v3c_C SRP54, signal recogniti 38.2 28 0.00095 34.9 4.6 19 212-230 100-118 (432)
456 3qkt_A DNA double-strand break 38.1 13 0.00045 35.7 2.1 16 213-228 25-40 (339)
457 1uf9_A TT1252 protein; P-loop, 38.0 16 0.00056 31.5 2.6 17 212-228 9-25 (203)
458 3l9o_A ATP-dependent RNA helic 38.0 21 0.00073 40.3 4.1 74 262-344 441-553 (1108)
459 2yz2_A Putative ABC transporte 37.6 14 0.00049 34.2 2.2 32 337-368 154-185 (266)
460 3hv2_A Response regulator/HD d 37.6 1.5E+02 0.0052 23.5 8.6 24 260-283 12-35 (153)
461 2q5c_A NTRC family transcripti 37.5 96 0.0033 27.1 7.6 62 262-328 4-66 (196)
462 3pxi_A Negative regulator of g 37.5 14 0.00048 39.8 2.5 19 210-228 200-218 (758)
463 3kta_B Chromosome segregation 37.5 15 0.00051 31.8 2.2 30 339-368 86-115 (173)
464 2xb4_A Adenylate kinase; ATP-b 37.3 18 0.0006 32.3 2.7 16 213-228 2-17 (223)
465 1vpl_A ABC transporter, ATP-bi 37.1 15 0.0005 34.0 2.2 32 337-368 162-193 (256)
466 2qi9_C Vitamin B12 import ATP- 36.8 15 0.0005 33.8 2.1 27 342-368 154-180 (249)
467 3tlx_A Adenylate kinase 2; str 36.7 18 0.00062 32.8 2.7 20 210-229 28-47 (243)
468 2ixe_A Antigen peptide transpo 36.7 15 0.00051 34.2 2.2 32 337-368 172-203 (271)
469 1vht_A Dephospho-COA kinase; s 36.7 15 0.00051 32.5 2.1 17 212-228 5-21 (218)
470 4anj_A Unconventional myosin-V 36.5 26 0.00088 39.3 4.3 56 181-237 108-169 (1052)
471 3nh6_A ATP-binding cassette SU 36.4 10 0.00034 36.2 0.9 32 337-368 206-237 (306)
472 1w7j_A Myosin VA; motor protei 36.3 33 0.0011 37.2 5.1 39 197-236 140-180 (795)
473 2p5t_B PEZT; postsegregational 36.2 13 0.00045 34.0 1.7 18 211-228 32-49 (253)
474 2olj_A Amino acid ABC transpor 36.1 16 0.00053 34.0 2.2 32 337-368 175-206 (263)
475 3umf_A Adenylate kinase; rossm 36.0 19 0.00067 32.3 2.8 20 210-229 28-47 (217)
476 2ihy_A ABC transporter, ATP-bi 35.8 15 0.00053 34.3 2.1 32 337-368 177-208 (279)
477 1kk8_A Myosin heavy chain, str 35.8 33 0.0011 37.5 4.9 61 175-236 126-193 (837)
478 2vhj_A Ntpase P4, P4; non- hyd 35.8 19 0.00066 34.6 2.8 22 210-231 122-143 (331)
479 1sq5_A Pantothenate kinase; P- 35.6 25 0.00087 33.1 3.7 19 210-228 79-97 (308)
480 1odf_A YGR205W, hypothetical 3 35.3 19 0.00066 33.8 2.7 16 213-228 33-48 (290)
481 2h57_A ADP-ribosylation factor 35.0 15 0.0005 31.4 1.7 17 211-227 21-37 (190)
482 1ltq_A Polynucleotide kinase; 34.8 16 0.00055 34.1 2.1 16 213-228 4-19 (301)
483 2jeo_A Uridine-cytidine kinase 34.5 19 0.00064 32.6 2.5 20 209-228 23-42 (245)
484 2og2_A Putative signal recogni 34.0 19 0.00065 35.1 2.5 19 211-229 157-175 (359)
485 3tqf_A HPR(Ser) kinase; transf 33.8 20 0.0007 31.2 2.4 20 210-229 15-34 (181)
486 2ycu_A Non muscle myosin 2C, a 33.8 36 0.0012 37.9 5.0 54 175-228 103-163 (995)
487 4db1_A Myosin-7; S1DC, cardiac 33.6 32 0.0011 37.2 4.4 61 175-236 128-195 (783)
488 1ypw_A Transitional endoplasmi 33.3 19 0.00064 39.2 2.6 19 210-228 237-255 (806)
489 3lhi_A Putative 6-phosphogluco 33.2 83 0.0028 28.3 6.6 27 319-348 45-71 (232)
490 1w9i_A Myosin II heavy chain; 33.2 33 0.0011 37.0 4.4 33 197-229 156-190 (770)
491 2v26_A Myosin VI; calmodulin-b 33.1 32 0.0011 37.2 4.3 32 197-228 124-157 (784)
492 3pxi_A Negative regulator of g 33.0 20 0.00068 38.6 2.7 17 213-229 523-539 (758)
493 2bbs_A Cystic fibrosis transme 33.0 18 0.00061 34.1 2.1 20 209-228 62-81 (290)
494 2dhr_A FTSH; AAA+ protein, hex 32.9 17 0.00059 37.1 2.1 17 212-228 65-81 (499)
495 1q57_A DNA primase/helicase; d 32.7 20 0.0007 36.4 2.6 22 209-230 240-261 (503)
496 1ko7_A HPR kinase/phosphatase; 32.6 88 0.003 29.7 6.9 18 211-228 144-161 (314)
497 2vp4_A Deoxynucleoside kinase; 32.3 18 0.00062 32.4 2.0 18 210-227 19-36 (230)
498 1zd9_A ADP-ribosylation factor 32.2 13 0.00044 31.8 0.9 33 195-227 6-38 (188)
499 3e70_C DPA, signal recognition 31.7 22 0.00076 34.1 2.5 19 210-228 128-146 (328)
500 1q3t_A Cytidylate kinase; nucl 31.7 28 0.00095 31.2 3.1 20 210-229 15-34 (236)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.5e-36 Score=287.98 Aligned_cols=196 Identities=34% Similarity=0.500 Sum_probs=175.5
Q ss_pred ccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhh
Q 012337 168 ISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKML 247 (465)
Q Consensus 168 ~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~ 247 (465)
.|.+...|.++++++.+.+.+...||..|+++|.++|+.++ +|+|+++++|||||||++|++|++.++....
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~------- 95 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQP------- 95 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-HTCCEEEEECTTSCHHHHHHHHHHHHHHTSC-------
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCcCHHHHHHHHHHHHHHHhcc-------
Confidence 45667889999999999999999999999999999999987 6999999999999999999999999885321
Q ss_pred hhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHH
Q 012337 248 EEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 327 (465)
Q Consensus 248 ~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l 327 (465)
......++++|||+|||+||.|+++.+..++...++.+..++||.....+...+..+++|+||||++|.+++
T Consensus 96 --------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 167 (242)
T 3fe2_A 96 --------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 167 (242)
T ss_dssp --------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred --------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 112245778999999999999999999999998899999999999998888888889999999999999999
Q ss_pred hCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 328 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
..+ ...++++++|||||||+|++++|...+..|+..++ ..+|+++||||++.
T Consensus 168 ~~~---~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~------------------------~~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 168 ECG---KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR------------------------PDRQTLMWSATWPK 219 (242)
T ss_dssp HHT---SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC------------------------SSCEEEEEESCCCH
T ss_pred HcC---CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC------------------------ccceEEEEEeecCH
Confidence 654 35688999999999999999999999999998887 67899999999974
No 2
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=274.72 Aligned_cols=198 Identities=31% Similarity=0.457 Sum_probs=165.4
Q ss_pred ccccccccccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhh
Q 012337 167 EISTEFDAWNE-LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGK 245 (465)
Q Consensus 167 ~~~~~~~~~~~-l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~ 245 (465)
..|.+...|.+ +++++.+++++.+.||..|+++|.++++.++ +|+|+++++|||||||++|++|++.++.....
T Consensus 13 ~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~---- 87 (228)
T 3iuy_A 13 LIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI---- 87 (228)
T ss_dssp CCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHC--------
T ss_pred cCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhccc----
Confidence 35667788988 7999999999999999999999999999987 79999999999999999999999998854321
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHH
Q 012337 246 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 325 (465)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~ 325 (465)
......++++|||+|||+||.|+++.+..+. ..++.+..++||.....+...+..+++|+||||++|..
T Consensus 88 ----------~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~ 156 (228)
T 3iuy_A 88 ----------SREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLND 156 (228)
T ss_dssp ---------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHH
T ss_pred ----------hhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHH
Confidence 1112356789999999999999999999985 45889999999998887777888899999999999999
Q ss_pred HHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 326 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 326 ~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
++... ...++++++|||||||++++++|...+..++..++ ..+|+++||||++
T Consensus 157 ~~~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 157 LQMNN---SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR------------------------PDRQTVMTSATWP 209 (228)
T ss_dssp HHHTT---CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC------------------------SSCEEEEEESCCC
T ss_pred HHHcC---CcCcccceEEEEECHHHHhccchHHHHHHHHHhCC------------------------cCCeEEEEEeeCC
Confidence 88654 35688999999999999999999999999999987 6789999999997
Q ss_pred Cc
Q 012337 406 LS 407 (465)
Q Consensus 406 ~~ 407 (465)
..
T Consensus 210 ~~ 211 (228)
T 3iuy_A 210 DT 211 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.8e-35 Score=288.16 Aligned_cols=187 Identities=33% Similarity=0.559 Sum_probs=161.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcC--CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 248 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~--~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 248 (465)
...+|.+++|++.++++|..+||..|+++|.++||.++ .+ +|++++||||||||++|++|+++++.
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il-~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~----------- 157 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQVE----------- 157 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHT-SSSCCCEEEECCTTSSHHHHHHHHHHHHCC-----------
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCCccHHHHHHHHHhhh-----------
Confidence 45789999999999999999999999999999999997 45 99999999999999999999998873
Q ss_pred hhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHH
Q 012337 249 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 327 (465)
Q Consensus 249 ~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l 327 (465)
....+|++|||+|||+||.|+++.+..++... ++.+..++|+...... ...+++|+||||++|++++
T Consensus 158 ---------~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l 225 (300)
T 3fmo_B 158 ---------PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWC 225 (300)
T ss_dssp ---------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHH
T ss_pred ---------ccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHH
Confidence 22356789999999999999999999998764 6888888888765332 2457899999999999999
Q ss_pred hCCCccccccCceeEEEecchhHhhh-cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 328 SGGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
.+. ....++++++|||||||+|++ ++|...+..|+..++ ..+|+|+||||+++
T Consensus 226 ~~~--~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~------------------------~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 226 SKL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFED 279 (300)
T ss_dssp TTT--CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC------------------------TTCEEEEEESCCCH
T ss_pred Hhc--CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC------------------------CCCEEEEEeccCCH
Confidence 642 235689999999999999998 688899999988887 67899999999985
Q ss_pred c
Q 012337 407 S 407 (465)
Q Consensus 407 ~ 407 (465)
.
T Consensus 280 ~ 280 (300)
T 3fmo_B 280 S 280 (300)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1e-34 Score=300.30 Aligned_cols=200 Identities=34% Similarity=0.598 Sum_probs=177.2
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhh
Q 012337 167 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 246 (465)
Q Consensus 167 ~~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~ 246 (465)
..|.+..+|.+++|++.+++++...||..|||+|.++||.++ +|+|++++|+||||||++|++|++++++...
T Consensus 50 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~------ 122 (434)
T 2db3_A 50 DVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGRDLMACAQTGSGKTAAFLLPILSKLLEDP------ 122 (434)
T ss_dssp SCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------
T ss_pred CCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCCchHHHHHHHHHHHHhcc------
Confidence 345567889999999999999999999999999999999987 7999999999999999999999999986431
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHH
Q 012337 247 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWEL 326 (465)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~ 326 (465)
......++++|||+|||+||.|+++.+.+++...+++++.++||.....+...+..+++|+||||++|.++
T Consensus 123 ---------~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~ 193 (434)
T 2db3_A 123 ---------HELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDF 193 (434)
T ss_dssp ---------CCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHH
T ss_pred ---------cccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHH
Confidence 11234578999999999999999999999998888999999999999888888888999999999999999
Q ss_pred HhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 327 MSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 327 l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
+..+ ...++++.+|||||||+|++++|...+..|+..+... ..+|+++||||++.
T Consensus 194 l~~~---~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~----------------------~~~q~l~~SAT~~~ 248 (434)
T 2db3_A 194 VDRT---FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR----------------------PEHQTLMFSATFPE 248 (434)
T ss_dssp HHTT---SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC----------------------SSCEEEEEESCCCH
T ss_pred HHhC---CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC----------------------CCceEEEEeccCCH
Confidence 9754 3568999999999999999999999999999886421 56899999999974
Q ss_pred c
Q 012337 407 S 407 (465)
Q Consensus 407 ~ 407 (465)
.
T Consensus 249 ~ 249 (434)
T 2db3_A 249 E 249 (434)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=5.5e-35 Score=280.30 Aligned_cols=201 Identities=36% Similarity=0.583 Sum_probs=171.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
+..+|.+|++++.+.++|...||..|+++|.++|+.++ +++|+++++|||||||++|++|++.++......
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~-------- 91 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLN-------- 91 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC---------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhhccc--------
Confidence 55789999999999999999999999999999999987 699999999999999999999999988532100
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
........++++|||+|||+||.|+++.+..++...++.++.++||.....+...+..+++|+||||++|..++...
T Consensus 92 ---~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 168 (253)
T 1wrb_A 92 ---QQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN 168 (253)
T ss_dssp --------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT
T ss_pred ---cccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC
Confidence 00112334679999999999999999999999988889999999999988887888888999999999999999654
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
...++.+.+|||||||+|++++|...+..|+..+.... ...+|+++||||++.
T Consensus 169 ---~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~q~l~~SAT~~~ 221 (253)
T 1wrb_A 169 ---KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPS--------------------GINRQTLMFSATFPK 221 (253)
T ss_dssp ---SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCC--------------------GGGCEEEEEESSCCH
T ss_pred ---CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCC--------------------CCCcEEEEEEEeCCH
Confidence 35688999999999999999999999999998764211 026799999999973
No 6
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=277.86 Aligned_cols=192 Identities=36% Similarity=0.553 Sum_probs=166.5
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 173 DAWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 173 ~~~~~l~--l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
..|.+++ +++.+++++..+||..|+++|.++++.++ .++|++++||||||||++|++|+++.+.+.+
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~---------- 120 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLR---------- 120 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTT----------
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhcc----------
Confidence 4566666 99999999999999999999999999997 5899999999999999999999999886431
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
.....++++|||+|||+||.|+++.+..++...++.+..++|+.........+..+++|+||||++|..++...
T Consensus 121 ------~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~ 194 (262)
T 3ly5_A 121 ------FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT 194 (262)
T ss_dssp ------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC
T ss_pred ------ccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc
Confidence 11224668999999999999999999999988899999999999988888888888999999999999988643
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
. ...++++.+|||||||+|++++|...+..|+..++ ..+|+|+||||++..
T Consensus 195 ~--~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~------------------------~~~q~l~~SAT~~~~ 245 (262)
T 3ly5_A 195 P--GFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLP------------------------TRRQTMLFSATQTRK 245 (262)
T ss_dssp T--TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSC------------------------SSSEEEEECSSCCHH
T ss_pred C--CcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCC------------------------CCCeEEEEEecCCHH
Confidence 2 24578999999999999999999999999999997 678999999999854
No 7
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=273.68 Aligned_cols=188 Identities=40% Similarity=0.684 Sum_probs=169.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
..+|.++++++.+.+++..+||..|+++|.++++.++ +++|+++++|||||||++|++|+++++...
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~il~~l~~~------------ 108 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPILNALLET------------ 108 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHS------------
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCCchhHhHHHHHHHHhcC------------
Confidence 4679999999999999999999999999999999987 699999999999999999999999988532
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
..++++|||+|||+||.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.+.
T Consensus 109 --------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~- 179 (249)
T 3ber_A 109 --------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT- 179 (249)
T ss_dssp --------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS-
T ss_pred --------CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC-
Confidence 23568999999999999999999999988899999999999988888888889999999999999988642
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
....+..+++|||||||++++++|...+..++..++ ..+|+++||||++.
T Consensus 180 -~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 180 -KGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP------------------------RDRKTFLFSATMTK 229 (249)
T ss_dssp -TTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC------------------------SSSEEEEEESSCCH
T ss_pred -CCcCccccCEEEEcChhhhhccChHHHHHHHHHhCC------------------------CCCeEEEEeccCCH
Confidence 124588999999999999999999999999999887 67899999999974
No 8
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.4e-34 Score=269.51 Aligned_cols=192 Identities=38% Similarity=0.572 Sum_probs=165.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
....|.++++++.+.+.|...||..|+++|.++++.++ +++|+++++|||||||++|++|++++++...
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~---------- 91 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLAL-QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQ---------- 91 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHTT----------
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhc----------
Confidence 35679999999999999999999999999999999987 6999999999999999999999999886421
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
.....++++|||+|||+||.|+++.+..++...++.+..++|+.........+ .+++|+|+||++|..++...
T Consensus 92 ------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~ 164 (236)
T 2pl3_A 92 ------WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDET 164 (236)
T ss_dssp ------CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHC
T ss_pred ------ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhc
Confidence 11234678999999999999999999999888889999999998876655544 57899999999999988643
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
....+.++.+|||||||+++++++...+..++..++ ..+|+++||||++.
T Consensus 165 --~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 165 --VSFHATDLQMLVLDEADRILDMGFADTMNAVIENLP------------------------KKRQTLLFSATQTK 214 (236)
T ss_dssp --SSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSC------------------------TTSEEEEEESSCCH
T ss_pred --CCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCC------------------------CCCeEEEEEeeCCH
Confidence 124578999999999999999999999999999987 67899999999974
No 9
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.7e-34 Score=262.66 Aligned_cols=186 Identities=35% Similarity=0.646 Sum_probs=167.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
.+|++++|++.+++.+...||..|+|+|.++++.++ +++|+++++|||||||++|++|++.++..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------------- 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLDL-------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCCT--------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEECCCCCchHHHHHHHHHHHhcc--------------
Confidence 469999999999999999999999999999999987 68999999999999999999999987621
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
...++++||++||++|+.|+++.+..++... ++.+..++|+.........+..+++|+|+||++|..++..+
T Consensus 68 ------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~- 140 (206)
T 1vec_A 68 ------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG- 140 (206)
T ss_dssp ------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-
T ss_pred ------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC-
Confidence 2346789999999999999999999998776 78899999999988877777888999999999999998654
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
...++.+.+|||||||+++++++...+..++..++ ..+|+++||||++.
T Consensus 141 --~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 141 --VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP------------------------KNRQILLYSATFPL 189 (206)
T ss_dssp --CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSC------------------------TTCEEEEEESCCCH
T ss_pred --CcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCC------------------------ccceEEEEEeeCCH
Confidence 35688999999999999999999999999999987 57899999999973
No 10
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.9e-34 Score=271.95 Aligned_cols=192 Identities=31% Similarity=0.558 Sum_probs=158.8
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhh
Q 012337 167 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKM 246 (465)
Q Consensus 167 ~~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~ 246 (465)
..+.+..+|.+++|++.+++++..+||..|+++|.++++.++ +++|+++++|||||||++|++|+++.+..
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~li~apTGsGKT~~~~l~~l~~l~~-------- 94 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCI-KGYDVIAQAQSGTGKTATFAISILQQLEI-------- 94 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEECCCSSHHHHHHHHHHHHHHCCT--------
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHh--------
Confidence 344556789999999999999999999999999999999987 68999999999999999999999987621
Q ss_pred hhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCC-CcEEEeChHHHHH
Q 012337 247 LEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKAR-PELVVGTPGRLWE 325 (465)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~-~dIiV~TP~~L~~ 325 (465)
...++++|||+|||+||.|+++.+..++...++.+..++||.....+...+..+ ++|+|+||++|.+
T Consensus 95 ------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~ 162 (237)
T 3bor_A 95 ------------EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFD 162 (237)
T ss_dssp ------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHH
T ss_pred ------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHH
Confidence 234678999999999999999999999888889999999998876666556555 8999999999999
Q ss_pred HHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 326 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 326 ~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
++..+ ...+..+.+|||||||+++++++...+..++..++ ..+|+|+||||++
T Consensus 163 ~l~~~---~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~i~~SAT~~ 215 (237)
T 3bor_A 163 MLNRR---YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN------------------------TSIQVVLLSATMP 215 (237)
T ss_dssp HHHTT---SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEECSSCC
T ss_pred HHHhC---CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCC------------------------CCCeEEEEEEecC
Confidence 99654 35678899999999999999999999999999887 6789999999997
Q ss_pred C
Q 012337 406 L 406 (465)
Q Consensus 406 ~ 406 (465)
.
T Consensus 216 ~ 216 (237)
T 3bor_A 216 T 216 (237)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.4e-33 Score=266.83 Aligned_cols=188 Identities=28% Similarity=0.498 Sum_probs=163.2
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhh
Q 012337 169 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 248 (465)
Q Consensus 169 ~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 248 (465)
+.+...|.++++++.+.+.+...||..|+++|.++++.++ +|+|+++++|||||||++|++|++..+..
T Consensus 20 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~---------- 88 (230)
T 2oxc_A 20 LAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGR-CGLDLIVQAKSGTGKTCVFSTIALDSLVL---------- 88 (230)
T ss_dssp ----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCT----------
T ss_pred CCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHh----------
Confidence 4455789999999999999999999999999999999986 69999999999999999999999987632
Q ss_pred hhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHH
Q 012337 249 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELM 327 (465)
Q Consensus 249 ~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l 327 (465)
...++++|||+||++|+.|+++.+..++... ++++..++||.........+ .+++|+|+||++|..++
T Consensus 89 ----------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~ 157 (230)
T 2oxc_A 89 ----------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLI 157 (230)
T ss_dssp ----------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHH
T ss_pred ----------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHH
Confidence 2245789999999999999999999987665 78999999999886665554 47899999999999998
Q ss_pred hCCCccccccCceeEEEecchhHhhhcC-CHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 328 SGGEKHLVELHTLSFFVLDEADRMIENG-HFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lViDEah~ll~~~-~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
..+ ...+.++++|||||||++++++ |...+..|+..++ ..+|+++||||++
T Consensus 158 ~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 158 ELD---YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP------------------------ASKQMLAVSATYP 209 (230)
T ss_dssp HTT---SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC------------------------SSCEEEEEESCCC
T ss_pred hcC---CcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC------------------------CCCeEEEEEeccC
Confidence 654 3557899999999999999987 9999999999987 5789999999986
No 12
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.7e-34 Score=268.62 Aligned_cols=186 Identities=34% Similarity=0.613 Sum_probs=164.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
.+|.++++++.+.+++...||..|+++|.++++.++ +++|+++++|||||||++|++|+++.+..
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------------- 68 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKP-------------- 68 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCT--------------
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHh--------------
Confidence 569999999999999999999999999999999987 68999999999999999999999988631
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC----CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHh
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI----NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 328 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~----~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~ 328 (465)
...++++|||+|||+||.|+++.+..++... ++.+..++||.........+..+++|+|+||++|.+++.
T Consensus 69 ------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~ 142 (219)
T 1q0u_A 69 ------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIR 142 (219)
T ss_dssp ------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHH
T ss_pred ------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHH
Confidence 2246789999999999999999999998766 688899999987665555555678999999999999986
Q ss_pred CCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 329 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
.+ ...+..+.+|||||||+++++++...+..++..++ ..+|+++||||++.
T Consensus 143 ~~---~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 143 EQ---ALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP------------------------KDLQMLVFSATIPE 193 (219)
T ss_dssp TT---CCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC------------------------TTCEEEEEESCCCG
T ss_pred cC---CCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC------------------------cccEEEEEecCCCH
Confidence 54 35678999999999999999999999999999887 57899999999964
No 13
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=2e-33 Score=264.16 Aligned_cols=190 Identities=30% Similarity=0.562 Sum_probs=160.6
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhh
Q 012337 169 STEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLE 248 (465)
Q Consensus 169 ~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~ 248 (465)
+.....|.++++++.+++.+...||..|+++|.++++.++ +++|+++++|||||||++|++|+++++.
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTGsGKT~~~~~~~l~~l~----------- 77 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRID----------- 77 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCC-----------
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHHh-----------
Confidence 4456789999999999999999999999999999999987 6899999999999999999999998773
Q ss_pred hhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHh
Q 012337 249 EKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 328 (465)
Q Consensus 249 ~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~ 328 (465)
....++++||++||++|+.|+++.+..++...++.+..++|+.........+.. ++|+|+||++|..++.
T Consensus 78 ---------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~ 147 (224)
T 1qde_A 78 ---------TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQ 147 (224)
T ss_dssp ---------TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHH
T ss_pred ---------ccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHH
Confidence 123467899999999999999999999988889999999999887665555444 8999999999999986
Q ss_pred CCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 329 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
.. ...+.++.+|||||||+++++++...+..++..++ ..+|+++||||+++.
T Consensus 148 ~~---~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~------------------------~~~~~i~lSAT~~~~ 199 (224)
T 1qde_A 148 RR---RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLSATMPND 199 (224)
T ss_dssp TT---SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEEESSCCHH
T ss_pred hC---CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCC------------------------ccCeEEEEEeecCHH
Confidence 54 35678999999999999999999999999999887 678999999999743
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=6.1e-33 Score=257.34 Aligned_cols=186 Identities=42% Similarity=0.682 Sum_probs=163.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 012337 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 253 (465)
Q Consensus 174 ~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 253 (465)
+|.++++++.+.+.+...||..|+|+|.++++.++ +++++++++|||||||++|++|++.++...
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~l~~~-------------- 66 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAERLAPS-------------- 66 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHc-CCCCEEEECCCCChHHHHHHHHHHHHHhhc--------------
Confidence 58899999999999999999999999999999987 699999999999999999999999887321
Q ss_pred hhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcc
Q 012337 254 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 333 (465)
Q Consensus 254 ~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~ 333 (465)
.....++++||++||++|+.|+++.+..++.. +++..++|+.........+..+++|+|+||++|..++..+
T Consensus 67 ---~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--- 138 (207)
T 2gxq_A 67 ---QERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQG--- 138 (207)
T ss_dssp ---CCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHT---
T ss_pred ---cccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcC---
Confidence 11234678999999999999999999998653 7788899999887777777778999999999999998653
Q ss_pred ccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 334 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 334 ~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
...+..+++|||||||+++++++...+..++..++ ..+|+++||||+++
T Consensus 139 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 139 VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP------------------------PSRQTLLFSATLPS 187 (207)
T ss_dssp SSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC------------------------TTSEEEEECSSCCH
T ss_pred CcchhhceEEEEEChhHhhccchHHHHHHHHHhCC------------------------ccCeEEEEEEecCH
Confidence 35688999999999999999999999999998887 67899999999974
No 15
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-32 Score=256.96 Aligned_cols=189 Identities=37% Similarity=0.654 Sum_probs=163.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
....|.+++|++.+.+++...||..|+++|.++++.++ +++|+++++|||+|||++|++|++..+.
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~~~------------- 77 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLE------------- 77 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCC-------------
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCchhhhhhHHHHHhhh-------------
Confidence 34679999999999999999999999999999999987 6899999999999999999999998762
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhC-CCcEEEeChHHHHHHHh
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKA-RPELVVGTPGRLWELMS 328 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~-~~dIiV~TP~~L~~~l~ 328 (465)
....++++|||+||++|+.|+++.+..+.... ++++..++|+.........+.. .++|+|+||++|..++.
T Consensus 78 -------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~ 150 (220)
T 1t6n_A 78 -------PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR 150 (220)
T ss_dssp -------CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHH
T ss_pred -------ccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHH
Confidence 12345689999999999999999999998765 7899999999987766665554 57999999999999986
Q ss_pred CCCccccccCceeEEEecchhHhhh-cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 329 GGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
.. ...+..+.+|||||||++++ .+++..+..++..++ ..+|+++||||+++.
T Consensus 151 ~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 151 NK---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSKE 203 (220)
T ss_dssp TT---SSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC------------------------SSSEEEEEESCCCTT
T ss_pred hC---CCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC------------------------CcCeEEEEEeecCHH
Confidence 54 25688999999999999986 477888888888776 578999999999864
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=265.02 Aligned_cols=195 Identities=33% Similarity=0.545 Sum_probs=160.6
Q ss_pred ccccccccccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhh
Q 012337 168 ISTEFDAWNEL----RLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKA 243 (465)
Q Consensus 168 ~~~~~~~~~~l----~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~ 243 (465)
.|.+...|.++ ++++.+++++...||..|+|+|.++|+.++ +++|+++++|||||||++|++|++.++.
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~------ 92 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLK------ 92 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHh------
Confidence 45556777776 899999999999999999999999999987 6999999999999999999999998873
Q ss_pred hhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHH-HHHhCCCcEEEeChHH
Q 012337 244 GKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE-RLLKARPELVVGTPGR 322 (465)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~-~~~~~~~dIiV~TP~~ 322 (465)
.....++++|||+|||+||.|+++.+..++...++.+..++|+....... .....+++|+||||++
T Consensus 93 -------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~ 159 (245)
T 3dkp_A 93 -------------QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNR 159 (245)
T ss_dssp -------------SCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHH
T ss_pred -------------hcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHH
Confidence 12345678999999999999999999999988888888887764332211 1223568999999999
Q ss_pred HHHHHhCCCccccccCceeEEEecchhHhhh---cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEE
Q 012337 323 LWELMSGGEKHLVELHTLSFFVLDEADRMIE---NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLV 399 (465)
Q Consensus 323 L~~~l~~~~~~~~~l~~i~~lViDEah~ll~---~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~ 399 (465)
|..++... .....++++.+|||||||+|++ .++...+..++..+.. ..+|+++
T Consensus 160 l~~~l~~~-~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~~~~~ 215 (245)
T 3dkp_A 160 LIYLLKQD-PPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS-----------------------HKVRRAM 215 (245)
T ss_dssp HHHHHHSS-SCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-----------------------TTCEEEE
T ss_pred HHHHHHhC-CCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC-----------------------CCcEEEE
Confidence 99999753 2235688999999999999998 4688888888877642 4689999
Q ss_pred EeeeccC
Q 012337 400 FSATIAL 406 (465)
Q Consensus 400 ~SATl~~ 406 (465)
||||++.
T Consensus 216 ~SAT~~~ 222 (245)
T 3dkp_A 216 FSATFAY 222 (245)
T ss_dssp EESSCCH
T ss_pred EeccCCH
Confidence 9999963
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=273.91 Aligned_cols=214 Identities=31% Similarity=0.517 Sum_probs=175.3
Q ss_pred cccccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhh-h
Q 012337 167 EISTEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAG-K 245 (465)
Q Consensus 167 ~~~~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~-~ 245 (465)
..|.+..+|.+++|++.+.++|...||..|+|+|.++||.++ +++|++++||||||||++|++|++++++....... .
T Consensus 9 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~ 87 (417)
T 2i4i_A 9 NCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIK-EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALR 87 (417)
T ss_dssp TCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence 345667889999999999999999999999999999999986 79999999999999999999999999875421000 0
Q ss_pred hhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHH
Q 012337 246 MLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWE 325 (465)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~ 325 (465)
....+ ........++++|||+|||+||.|+++.+..++...+++++.++||.....+...+..+++|+|+||++|..
T Consensus 88 ~~~~~---~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 164 (417)
T 2i4i_A 88 AMKEN---GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVD 164 (417)
T ss_dssp HHHHC---BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHH
T ss_pred ccccc---cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHH
Confidence 00000 000112235789999999999999999999999888999999999999988888888889999999999999
Q ss_pred HHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 326 LMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 326 ~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
++..+ ...++.+++|||||||++++++|...+..++..+...+ ...+|+++||||++
T Consensus 165 ~l~~~---~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~--------------------~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 165 MMERG---KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP--------------------KGVRHTMMFSATFP 221 (417)
T ss_dssp HHHTT---SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC--------------------BTTBEEEEEESCCC
T ss_pred HHHcC---CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC--------------------cCCcEEEEEEEeCC
Confidence 99754 35688999999999999999999999999987543211 13689999999997
Q ss_pred Cc
Q 012337 406 LS 407 (465)
Q Consensus 406 ~~ 407 (465)
..
T Consensus 222 ~~ 223 (417)
T 2i4i_A 222 KE 223 (417)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=1.1e-30 Score=267.21 Aligned_cols=187 Identities=30% Similarity=0.560 Sum_probs=168.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
..+|.+++|++.+.+++...||..|+|+|.++++.++ +++|+++++|||||||++|++|+++.+.
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~-------------- 100 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLD-------------- 100 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCC--------------
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCCchHHHHHHHHHHHh--------------
Confidence 4679999999999999999999999999999999987 6999999999999999999999998762
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
....++++|||+|||+|+.|+++.+..++...++.+..++||.........+..+++|+|+||++|.+++..+
T Consensus 101 ------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~- 173 (410)
T 2j0s_A 101 ------IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR- 173 (410)
T ss_dssp ------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT-
T ss_pred ------hccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC-
Confidence 1234568999999999999999999999988899999999999988888888888999999999999999754
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
...+..+.+|||||||+++++++...+..++..++ ..+|+++||||++.
T Consensus 174 --~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~ 222 (410)
T 2j0s_A 174 --SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP------------------------PATQVVLISATLPH 222 (410)
T ss_dssp --SSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC------------------------TTCEEEEEESCCCH
T ss_pred --CccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc------------------------cCceEEEEEcCCCH
Confidence 35678899999999999999999999999988876 67899999999974
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=258.37 Aligned_cols=189 Identities=30% Similarity=0.564 Sum_probs=167.5
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhh
Q 012337 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 249 (465)
Q Consensus 170 ~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 249 (465)
.....|.++++++.+.+.+...||..|+++|.++|+.++ +++++++++|||||||++|++|+++.+..
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----------- 104 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQIEL----------- 104 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEECCCSCSSSHHHHHHHHHHHCCT-----------
T ss_pred chhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHh-CCCCEEEECCCCCcccHHHHHHHHHHHhh-----------
Confidence 345679999999999999999999999999999999987 69999999999999999999999987631
Q ss_pred hhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh-CCCcEEEeChHHHHHHHh
Q 012337 250 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMS 328 (465)
Q Consensus 250 ~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~-~~~dIiV~TP~~L~~~l~ 328 (465)
...++++|||+||++|+.|+++.+..++...++.+..++|+.........+. .+++|+||||++|.+++.
T Consensus 105 ---------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~ 175 (414)
T 3eiq_A 105 ---------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN 175 (414)
T ss_dssp ---------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHH
T ss_pred ---------cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 2245689999999999999999999999888999999999998877766665 678999999999999986
Q ss_pred CCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 329 GGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
.. ...+..+.+|||||||+++++++...+..++..++ ..+|+|+||||++.
T Consensus 176 ~~---~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~ 226 (414)
T 3eiq_A 176 RR---YLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN------------------------SNTQVVLLSATMPS 226 (414)
T ss_dssp HT---SSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC------------------------TTCEEEEECSCCCH
T ss_pred cC---CcccccCcEEEEECHHHhhccCcHHHHHHHHHhCC------------------------CCCeEEEEEEecCH
Confidence 54 35678899999999999999999999999998887 67899999999964
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=264.57 Aligned_cols=188 Identities=33% Similarity=0.557 Sum_probs=156.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 249 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 249 (465)
....|.+++|++.++++|..+||..|+|+|.++|+.++.+ ++++|++||||||||++|++|++.++.
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~------------ 157 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE------------ 157 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCC------------
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHh------------
Confidence 3568999999999999999999999999999999999742 389999999999999999999998762
Q ss_pred hhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHh
Q 012337 250 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 328 (465)
Q Consensus 250 ~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~ 328 (465)
....++++|||+|||+||.|+++.+..+.... ++.+...+++...... ....++|+||||++|++++.
T Consensus 158 --------~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~ 226 (479)
T 3fmp_B 158 --------PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 226 (479)
T ss_dssp --------TTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHT
T ss_pred --------hcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHH
Confidence 22346789999999999999999999988754 5777777777654322 13457999999999999996
Q ss_pred CCCccccccCceeEEEecchhHhhh-cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 329 GGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
+. ....+.++.+|||||||+|++ .++...+..++..++ ..+|+|+||||+++.
T Consensus 227 ~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~~SAT~~~~ 280 (479)
T 3fmp_B 227 KL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFEDS 280 (479)
T ss_dssp TS--CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC------------------------TTSEEEEEESCCCHH
T ss_pred hc--CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC------------------------ccceEEEEeCCCCHH
Confidence 42 245678999999999999997 577777777877766 678999999999754
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.96 E-value=2.5e-29 Score=256.03 Aligned_cols=187 Identities=34% Similarity=0.623 Sum_probs=165.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
...|.+++|++.+.++|...||..|+|+|.++++.++ +++++++++|||+|||++|++|++.++..
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~li~a~TGsGKT~~~~~~~~~~~~~------------- 85 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKP------------- 85 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCT-------------
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCcHHHHHHHHHHHHHHhh-------------
Confidence 4679999999999999999999999999999999987 68999999999999999999999987621
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
...++++|||+||++|+.|+++.+..++...++.+..++|+.........+..+++|+||||++|..++...
T Consensus 86 -------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~- 157 (400)
T 1s2m_A 86 -------KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK- 157 (400)
T ss_dssp -------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT-
T ss_pred -------ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC-
Confidence 224568999999999999999999999988899999999999987777777788999999999999988654
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
...+..+.+|||||||++++.++...+..++..++ ...|+++||||++.
T Consensus 158 --~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~lSAT~~~ 206 (400)
T 1s2m_A 158 --VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP------------------------PTHQSLLFSATFPL 206 (400)
T ss_dssp --CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC------------------------SSCEEEEEESCCCH
T ss_pred --CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC------------------------cCceEEEEEecCCH
Confidence 25578999999999999998888888888887776 56899999999974
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=8.9e-30 Score=272.59 Aligned_cols=193 Identities=33% Similarity=0.536 Sum_probs=160.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHh-cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcC
Q 012337 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYA 258 (465)
Q Consensus 180 l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~-~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~ 258 (465)
|++.+++++..+||..|+|+|.++|+.++. .++|+|++||||||||++|++|+++++...+ ..
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~----------------~~ 91 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK----------------FD 91 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT----------------TS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcc----------------cc
Confidence 999999999999999999999999999874 3789999999999999999999999986542 12
Q ss_pred CCCCeEEEEEcccHHHHHHHHHHHHHHHcc----CCceEEEEecCCCHHHHHHHHh-CCCcEEEeChHHHHHHHhCCCcc
Q 012337 259 PKGHLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKH 333 (465)
Q Consensus 259 ~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~----~~~~v~~~~gg~~~~~~~~~~~-~~~dIiV~TP~~L~~~l~~~~~~ 333 (465)
...++++|||+|||+||.|+++.+..++.. ..+.+..++||.....+...+. .+++|+||||++|.+++... .
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~--~ 169 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY--S 169 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--H
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc--c
Confidence 344679999999999999999999998642 3567888999998877766664 47999999999999988642 1
Q ss_pred ccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 334 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 334 ~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
...++.+.+|||||||+|++++|...+..|+..++..... ....+|+|+||||++..
T Consensus 170 ~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-----------------~~~~~~~l~~SAT~~~~ 226 (579)
T 3sqw_A 170 NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-----------------SADNIKTLLFSATLDDK 226 (579)
T ss_dssp HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-----------------CTTCCEEEEEESSCCTH
T ss_pred ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-----------------cccCceEEEEeccCChH
Confidence 2458899999999999999999999999998877532111 11468999999999864
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-30 Score=295.14 Aligned_cols=182 Identities=20% Similarity=0.229 Sum_probs=156.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
..|..+++++.+...+...++..|+|+|.++|+.++ +++++|++||||||||++|++|++..+.
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~-~g~dvLV~ApTGSGKTlva~l~i~~~l~--------------- 225 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLK--------------- 225 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHT-TTCCEEEECCSSSHHHHHHHHHHHHHHH---------------
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHHh---------------
Confidence 456667777776666666667789999999999985 7999999999999999999999998872
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 332 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~ 332 (465)
.+.++||++|||+||.|+++.+..++. .++.++|+... ..+++|+||||++|++++..+.
T Consensus 226 --------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~- 285 (1108)
T 3l9o_A 226 --------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGS- 285 (1108)
T ss_dssp --------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCS-
T ss_pred --------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCc-
Confidence 245899999999999999999999864 57778888763 3568999999999999997642
Q ss_pred cccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHH
Q 012337 333 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 412 (465)
Q Consensus 333 ~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 412 (465)
..++++.+|||||||+|.++++...+..++..++ ..+|+|+||||+++..++..
T Consensus 286 --~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~------------------------~~~qvl~lSATipn~~e~a~ 339 (1108)
T 3l9o_A 286 --EVMREVAWVIFDEVHYMRDKERGVVWEETIILLP------------------------DKVRYVFLSATIPNAMEFAE 339 (1108)
T ss_dssp --SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC------------------------TTSEEEEEECSCSSCHHHHH
T ss_pred --cccccCCEEEEhhhhhccccchHHHHHHHHHhcC------------------------CCceEEEEcCCCCCHHHHHH
Confidence 4588999999999999999999999999999997 67899999999999999999
Q ss_pred Hhhh
Q 012337 413 KLKH 416 (465)
Q Consensus 413 ~l~~ 416 (465)
|+..
T Consensus 340 ~l~~ 343 (1108)
T 3l9o_A 340 WICK 343 (1108)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=3.3e-29 Score=254.02 Aligned_cols=188 Identities=30% Similarity=0.566 Sum_probs=166.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
....|.+++|++.+.+.+...||..|+|+|.++++.++ +++++++++|||+|||++|++|++..+..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------------ 85 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDT------------ 85 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH-HTCCEEECCCSSHHHHHHHHHHHHHHCCT------------
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhhc------------
Confidence 34679999999999999999999999999999999987 68999999999999999999999987631
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
...++++|||+||++|+.|+++.+..++...++.+..++|+.........+. +++|+|+||++|...+...
T Consensus 86 --------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~ 156 (394)
T 1fuu_A 86 --------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR 156 (394)
T ss_dssp --------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTT
T ss_pred --------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhC
Confidence 2346789999999999999999999998888999999999998866655554 6899999999999998654
Q ss_pred CccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 331 EKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
...+..+.+|||||||++.++++...+..++..++ ..+|+++||||+++.
T Consensus 157 ---~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 206 (394)
T 1fuu_A 157 ---RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP------------------------PTTQVVLLSATMPND 206 (394)
T ss_dssp ---SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC------------------------TTCEEEEECSSCCHH
T ss_pred ---CcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCC------------------------CCceEEEEEEecCHH
Confidence 25578899999999999999999999999999887 678999999999753
No 25
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.96 E-value=2e-29 Score=268.67 Aligned_cols=194 Identities=34% Similarity=0.534 Sum_probs=160.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHh-cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 012337 179 RLHPLLMKSIYRLGFKEPTPIQKACIPAAAH-QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 257 (465)
Q Consensus 179 ~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~-~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 257 (465)
.|++.+++++...||..|+|+|.++|+.++. .++|+|++||||||||++|++|+++++.... .
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~----------------~ 141 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK----------------F 141 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTT----------------T
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcc----------------c
Confidence 3999999999999999999999999999874 3789999999999999999999999986542 1
Q ss_pred CCCCCeEEEEEcccHHHHHHHHHHHHHHHcc----CCceEEEEecCCCHHHHHHHH-hCCCcEEEeChHHHHHHHhCCCc
Q 012337 258 APKGHLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGGEK 332 (465)
Q Consensus 258 ~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~----~~~~v~~~~gg~~~~~~~~~~-~~~~dIiV~TP~~L~~~l~~~~~ 332 (465)
....++++|||+|||+||.|+++.+..++.. ..+.+..++||.....+...+ ..+++|+||||++|.+++.+.
T Consensus 142 ~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-- 219 (563)
T 3i5x_A 142 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-- 219 (563)
T ss_dssp SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--
T ss_pred cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc--
Confidence 2234678999999999999999999997542 246688899999887766655 457999999999999988642
Q ss_pred cccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 333 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 333 ~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
....++.+.+|||||||+|++++|...+..|+..++..... ....+|+|+||||+++.
T Consensus 220 ~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-----------------~~~~~~~l~~SAT~~~~ 277 (563)
T 3i5x_A 220 SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-----------------SADNIKTLLFSATLDDK 277 (563)
T ss_dssp HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-----------------CTTCCEEEEEESSCCTH
T ss_pred cccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-----------------CccCceEEEEEccCCHH
Confidence 12457889999999999999999999999998877532111 11468999999999865
No 26
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.96 E-value=7.7e-29 Score=251.29 Aligned_cols=188 Identities=37% Similarity=0.670 Sum_probs=161.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
..|.+++|++.+.++|..+||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+.
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~--------------- 71 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLE--------------- 71 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHT-TTCCEEEECSSCSSHHHHHHHHHHHHCC---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHhhc---------------
Confidence 569999999999999999999999999999999986 6899999999999999999999998762
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhC-CCcEEEeChHHHHHHHhCC
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKA-RPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~-~~dIiV~TP~~L~~~l~~~ 330 (465)
....++++|||+||++|+.|+++.+..+.... ++++..++|+.........+.. .++|+|+||++|..++...
T Consensus 72 -----~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~ 146 (391)
T 1xti_A 72 -----PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK 146 (391)
T ss_dssp -----CCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT
T ss_pred -----ccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 12345689999999999999999999998765 7899999999988776665554 4799999999999988654
Q ss_pred CccccccCceeEEEecchhHhhhc-CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 331 EKHLVELHTLSFFVLDEADRMIEN-GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~~-~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
. ..+..+.+|||||||++.++ ++...+..++..++ ..+|+++||||++...
T Consensus 147 ~---~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~~ 198 (391)
T 1xti_A 147 S---LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP------------------------HEKQVMMFSATLSKEI 198 (391)
T ss_dssp S---SCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC------------------------SSSEEEEEESSCCSTH
T ss_pred C---ccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC------------------------CCceEEEEEeeCCHHH
Confidence 2 55889999999999999873 67778888887776 5789999999998653
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.9e-28 Score=245.69 Aligned_cols=187 Identities=35% Similarity=0.642 Sum_probs=164.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
..+|.+++|++.+.+.|...||..|+|+|.++++.++.+++++++++|||||||++|++|++..+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~-------------- 70 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN-------------- 70 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC--------------
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhc--------------
Confidence 467999999999999999999999999999999999854479999999999999999999988752
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
...++++|||+||++|+.|+++.+..++...++.+..++|+.........+. +++|+|+||++|..++..+
T Consensus 71 -------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~- 141 (367)
T 1hv8_A 71 -------ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRG- 141 (367)
T ss_dssp -------SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTT-
T ss_pred -------ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcC-
Confidence 1246689999999999999999999999888899999999998876665555 6899999999999998654
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
...+.++.+|||||||.+.++++...+..++..++ ...|+++||||++..
T Consensus 142 --~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 191 (367)
T 1hv8_A 142 --TLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN------------------------KDKRILLFSATMPRE 191 (367)
T ss_dssp --CSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC------------------------SSCEEEEECSSCCHH
T ss_pred --CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC------------------------CCceEEEEeeccCHH
Confidence 25578999999999999999999999999998876 678999999999743
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=1.7e-28 Score=250.23 Aligned_cols=188 Identities=33% Similarity=0.557 Sum_probs=158.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 249 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 249 (465)
...+|.++++++.+++++...||..|+|+|.++++.++.. ++++++++|||||||++|++|+++++.
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~------------ 90 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE------------ 90 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCC------------
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhh------------
Confidence 4578999999999999999999999999999999999742 389999999999999999999998763
Q ss_pred hhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC-CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHh
Q 012337 250 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI-NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMS 328 (465)
Q Consensus 250 ~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~ 328 (465)
....++++|||+||++||.|+++.+..+.... ++.+....|+...... ....++|+||||++|..++.
T Consensus 91 --------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~ 159 (412)
T 3fht_A 91 --------PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCS 159 (412)
T ss_dssp --------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHT
T ss_pred --------hcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHH
Confidence 22346689999999999999999999987654 6778888887654322 23467999999999999986
Q ss_pred CCCccccccCceeEEEecchhHhhh-cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 329 GGEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
+. ....+.++.+|||||||++++ .++...+..++..++ ..+|+++||||++..
T Consensus 160 ~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 213 (412)
T 3fht_A 160 KL--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP------------------------RNCQMLLFSATFEDS 213 (412)
T ss_dssp TS--CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC------------------------TTCEEEEEESCCCHH
T ss_pred hc--CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC------------------------CCceEEEEEeecCHH
Confidence 42 235578999999999999987 678888888888876 678999999999754
No 29
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=3e-28 Score=246.66 Aligned_cols=184 Identities=33% Similarity=0.560 Sum_probs=157.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcC--CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 249 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~--~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 249 (465)
..+|.+++|++.+++++...||..|+|+|.++++.++ ++ +++++++|||+|||++|++|++.++.
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~------------ 70 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLL-HNPPRNMIAQSQSGTGKTAAFSLTMLTRVN------------ 70 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH-CSSCCCEEEECCTTSCHHHHHHHHHHHHCC------------
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCCeEEEECCCCCcHHHHHHHHHHHHhc------------
Confidence 4789999999999999999999999999999999997 45 89999999999999999999998762
Q ss_pred hhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhC
Q 012337 250 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 329 (465)
Q Consensus 250 ~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~ 329 (465)
....++++|||+||++|+.|+++.+..++...++.+...+++..... ...+++|+|+||++|..++..
T Consensus 71 --------~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~ 138 (395)
T 3pey_A 71 --------PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRR 138 (395)
T ss_dssp --------TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHT
T ss_pred --------cCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHc
Confidence 12346689999999999999999999998888888888887754321 123689999999999999865
Q ss_pred CCccccccCceeEEEecchhHhhh-cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 330 GEKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
. ...+..+.+|||||||++.+ .++...+..++..++ ..+|+++||||++..
T Consensus 139 ~---~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~------------------------~~~~~i~~SAT~~~~ 190 (395)
T 3pey_A 139 K---LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP------------------------KDTQLVLFSATFADA 190 (395)
T ss_dssp T---CBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC------------------------TTCEEEEEESCCCHH
T ss_pred C---CcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC------------------------CCcEEEEEEecCCHH
Confidence 3 35688999999999999997 677788888888776 678999999999754
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.1e-27 Score=235.46 Aligned_cols=173 Identities=35% Similarity=0.640 Sum_probs=153.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 012337 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 259 (465)
Q Consensus 180 l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (465)
|++.+.+++..+||..|+|+|.++++.++ +++++++++|||+|||++|++|++..
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~------------------------ 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPILEL------------------------ 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHH------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEcCCCCcHHHHHHHHHHhh------------------------
Confidence 57889999999999999999999999987 68999999999999999999998752
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCc
Q 012337 260 KGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 339 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 339 (465)
+.++|||+||++|+.|+++.+..++...++.+..++|+.........+. .++|+|+||++|..++... ...+..
T Consensus 56 --~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~---~~~~~~ 129 (337)
T 2z0m_A 56 --GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKG---VIDLSS 129 (337)
T ss_dssp --TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTT---SCCGGG
T ss_pred --cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcC---Ccchhh
Confidence 2479999999999999999999998888899999999998877666555 4899999999999988654 255788
Q ss_pred eeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 340 LSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 340 i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
+.+|||||||++.++++...+..++..++ ...|+++||||++..
T Consensus 130 ~~~iViDEah~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~SAT~~~~ 173 (337)
T 2z0m_A 130 FEIVIIDEADLMFEMGFIDDIKIILAQTS------------------------NRKITGLFSATIPEE 173 (337)
T ss_dssp CSEEEEESHHHHHHTTCHHHHHHHHHHCT------------------------TCSEEEEEESCCCHH
T ss_pred CcEEEEEChHHhhccccHHHHHHHHhhCC------------------------cccEEEEEeCcCCHH
Confidence 99999999999999999999999998887 568999999999743
No 31
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.94 E-value=2.9e-27 Score=259.33 Aligned_cols=190 Identities=21% Similarity=0.303 Sum_probs=163.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhh
Q 012337 174 AWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEE 253 (465)
Q Consensus 174 ~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~ 253 (465)
.|.+++|++.+.+.+...||..|+|+|.++++.++.++++++++||||||||++|.+|+++.+...
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------------- 67 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------------- 67 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--------------
Confidence 588999999999999999999999999999998445799999999999999999999999888532
Q ss_pred hhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcc
Q 012337 254 AEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKH 333 (465)
Q Consensus 254 ~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~ 333 (465)
+.++||++|+|+||.|+++.+..+. ..+++++.++|+...... ....++|+||||++|..++...
T Consensus 68 --------~~~~l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~--- 132 (720)
T 2zj8_A 68 --------GGKAVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHG--- 132 (720)
T ss_dssp --------CSEEEEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHT---
T ss_pred --------CCEEEEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcC---
Confidence 3589999999999999999996554 348899999998754332 2246899999999999888653
Q ss_pred ccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHH
Q 012337 334 LVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 413 (465)
Q Consensus 334 ~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 413 (465)
...++++++|||||||.+.++++...+..++..++ ...|+|+||||+++..++..|
T Consensus 133 ~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------------------------~~~~ii~lSATl~n~~~~~~~ 188 (720)
T 2zj8_A 133 SSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------------------------GKAQIIGLSATIGNPEELAEW 188 (720)
T ss_dssp CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------------------------TTBEEEEEECCCSCHHHHHHH
T ss_pred hhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------------------------cCCeEEEEcCCcCCHHHHHHH
Confidence 24478999999999999998899999999998886 358999999999999999999
Q ss_pred hhh
Q 012337 414 LKH 416 (465)
Q Consensus 414 l~~ 416 (465)
+..
T Consensus 189 l~~ 191 (720)
T 2zj8_A 189 LNA 191 (720)
T ss_dssp TTE
T ss_pred hCC
Confidence 864
No 32
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.94 E-value=7.2e-27 Score=255.99 Aligned_cols=190 Identities=24% Similarity=0.285 Sum_probs=163.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGE 252 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~ 252 (465)
..|.+++|++.+.+.+...||..|+|+|.++++.++.++++++++||||||||++|.+++++++...
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~------------- 74 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN------------- 74 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------------
Confidence 5799999999999999999999999999999998556799999999999999999999999887421
Q ss_pred hhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc
Q 012337 253 EAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK 332 (465)
Q Consensus 253 ~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~ 332 (465)
+.++||++|+|+||.|+++.+..+ ...++++..++|+...... ....++|+||||++|..++.++
T Consensus 75 ---------~~~il~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~-- 139 (715)
T 2va8_A 75 ---------GGKAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHR-- 139 (715)
T ss_dssp ---------CSEEEEECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHC--
T ss_pred ---------CCeEEEEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCC--
Confidence 358999999999999999999644 3458899999998765332 1236899999999999988653
Q ss_pred cccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHH
Q 012337 333 HLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRK 412 (465)
Q Consensus 333 ~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~ 412 (465)
...++++++|||||||.+.+.++...+..++..++ ..|+|+||||+++..++..
T Consensus 140 -~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-------------------------~~~ii~lSATl~n~~~~~~ 193 (715)
T 2va8_A 140 -PEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-------------------------RRNLLALSATISNYKQIAK 193 (715)
T ss_dssp -CGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-------------------------TSEEEEEESCCTTHHHHHH
T ss_pred -hhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-------------------------cCcEEEEcCCCCCHHHHHH
Confidence 24488999999999999988889888988887774 4799999999999999999
Q ss_pred Hhhh
Q 012337 413 KLKH 416 (465)
Q Consensus 413 ~l~~ 416 (465)
|+..
T Consensus 194 ~l~~ 197 (715)
T 2va8_A 194 WLGA 197 (715)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 9864
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=1.9e-26 Score=236.45 Aligned_cols=178 Identities=19% Similarity=0.191 Sum_probs=139.0
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCC
Q 012337 184 LMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH 262 (465)
Q Consensus 184 l~~~l~~-~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (465)
+.+.+.+ .|| .|+|+|.++++.++ +++|+++++|||||||++|++|++..+ ..+
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~l~~~~~~~-----------------------~~~ 64 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLA-----------------------RKG 64 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHT-TTCCEECCSCSSSSHHHHHHHHHHHHH-----------------------TTT
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHh-----------------------cCC
Confidence 3444444 466 89999999999987 689999999999999999999988765 135
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCH---HHHHHHHhCC-CcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST---EKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~---~~~~~~~~~~-~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
+++|||+|||+||.|+++.+..++. .++++..++|+.+. ..+...+..+ ++|+||||++|.+++.. ..+.
T Consensus 65 ~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~ 138 (414)
T 3oiy_A 65 KKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQK 138 (414)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTC
T ss_pred CEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccc
Confidence 6899999999999999999999877 78999999999998 4455555555 99999999999887752 5577
Q ss_pred ceeEEEecchhHhhh-----------cCCHHH-HHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 339 TLSFFVLDEADRMIE-----------NGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 339 ~i~~lViDEah~ll~-----------~~~~~~-l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
++.+|||||||++.+ ++|... +..++..++.... .-.-..+..+|+++||||+.
T Consensus 139 ~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~-------------~~~l~~~~~~~~i~~SAT~~ 204 (414)
T 3oiy_A 139 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI-------------YERPKNLKPGILVVSSATAK 204 (414)
T ss_dssp CCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-------------CCCCTTCCCCEEEESSCCSS
T ss_pred cccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh-------------hhhcccCCCceEEEEecCCC
Confidence 999999999986653 677777 7778877641000 00000114689999999943
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.93 E-value=1.1e-26 Score=254.05 Aligned_cols=191 Identities=19% Similarity=0.239 Sum_probs=158.0
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 174 AWNELR--LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 174 ~~~~l~--l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
+|.+|+ |++.+.+.+...||..|+|+|.++++.++ ++++++++||||||||++|.+++++.+..
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~------------- 67 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK------------- 67 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT-------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHh-------------
Confidence 477777 89999999999999999999999999965 79999999999999999999999988731
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
+.++||++|+|+||.|+++.+..+ ...++++..++|+...... ....++|+||||++|..++.+.
T Consensus 68 ----------~~~~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~- 132 (702)
T 2p6r_A 68 ----------GGKSLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNR- 132 (702)
T ss_dssp ----------TCCEEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTT-
T ss_pred ----------CCcEEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcC-
Confidence 358999999999999999999644 3458899999998754321 1236899999999999988764
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHH
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFR 411 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~ 411 (465)
...++++++|||||||.+.++++...+..++..+... ....|+|+||||+++..++.
T Consensus 133 --~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---------------------~~~~~ii~lSATl~n~~~~~ 189 (702)
T 2p6r_A 133 --ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---------------------NKALRVIGLSATAPNVTEIA 189 (702)
T ss_dssp --CSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH---------------------CTTCEEEEEECCCTTHHHHH
T ss_pred --hhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc---------------------CcCceEEEECCCcCCHHHHH
Confidence 2447899999999999999888988888888776411 14689999999999999999
Q ss_pred HHhhh
Q 012337 412 KKLKH 416 (465)
Q Consensus 412 ~~l~~ 416 (465)
.|+..
T Consensus 190 ~~l~~ 194 (702)
T 2p6r_A 190 EWLDA 194 (702)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 99864
No 35
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=4.1e-26 Score=267.45 Aligned_cols=195 Identities=25% Similarity=0.306 Sum_probs=157.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCC
Q 012337 180 LHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAP 259 (465)
Q Consensus 180 l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (465)
|+....++++..+|..++|+|.++|+.+++.+.|++++||||||||++|.+|++.++.+.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-------------------- 970 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-------------------- 970 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC--------------------
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC--------------------
Confidence 456778888888999999999999999988888999999999999999999999998642
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHH-ccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 260 KGHLRALIITPTRELALQVTDHLKEVA-KGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~~~l~~l~-~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
.+.++|||+|||+||.|++..+.+.+ ...+++|+.++|+...... ...+++||||||++|..++.+. .....++
T Consensus 971 -~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~-~~~~~l~ 1045 (1724)
T 4f92_B 971 -SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRW-KQRKNVQ 1045 (1724)
T ss_dssp -TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTT-TTCHHHH
T ss_pred -CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCc-ccccccc
Confidence 23479999999999999999997654 5578999999998654322 2345899999999987777543 2234578
Q ss_pred ceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhhc
Q 012337 339 TLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKHG 417 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~~ 417 (465)
+|++|||||+|.|.+ ..+..++.++..|. ++..+....+|+|+||||++|+.++++||...
T Consensus 1046 ~v~lvViDE~H~l~d-~rg~~le~il~rl~-----------------~i~~~~~~~~riI~lSATl~N~~dla~WL~~~ 1106 (1724)
T 4f92_B 1046 NINLFVVDEVHLIGG-ENGPVLEVICSRMR-----------------YISSQIERPIRIVALSSSLSNAKDVAHWLGCS 1106 (1724)
T ss_dssp SCSEEEECCGGGGGS-TTHHHHHHHHHHHH-----------------HHHHTTSSCCEEEEEESCBTTHHHHHHHHTCC
T ss_pred eeeEEEeechhhcCC-CCCccHHHHHHHHH-----------------HHHhhcCCCceEEEEeCCCCCHHHHHHHhCCC
Confidence 999999999998875 56777777766553 22222336789999999999999999999753
No 36
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.93 E-value=8.8e-26 Score=237.87 Aligned_cols=192 Identities=26% Similarity=0.427 Sum_probs=134.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEK 250 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~ 250 (465)
...|...++++.+.+.+...||..|+++|.++|+.++.+ ++++++++|||||||++|+++++.++.
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~------------- 184 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVD------------- 184 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSC-------------
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHH-------------
Confidence 344566678899999999999999999999999999742 399999999999999999999998773
Q ss_pred hhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCC
Q 012337 251 GEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGG 330 (465)
Q Consensus 251 ~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~ 330 (465)
....++++|||+||++|+.|+++.+..++...++.+...+++..... ...+++|+||||++|..++...
T Consensus 185 -------~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~ 253 (508)
T 3fho_A 185 -------ASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRR 253 (508)
T ss_dssp -------TTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTT
T ss_pred -------hCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcC
Confidence 12346689999999999999999999998777777766666543322 2346899999999999988654
Q ss_pred CccccccCceeEEEecchhHhhh-cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH-
Q 012337 331 EKHLVELHTLSFFVLDEADRMIE-NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA- 408 (465)
Q Consensus 331 ~~~~~~l~~i~~lViDEah~ll~-~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~- 408 (465)
...+..+.+|||||||++.+ .++...+..++..++ ..+|+|+||||+++..
T Consensus 254 ---~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~------------------------~~~~~i~lSAT~~~~~~ 306 (508)
T 3fho_A 254 ---QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP------------------------RNTQIVLFSATFSERVE 306 (508)
T ss_dssp ---CSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSC------------------------TTCEEEEEESCCSTHHH
T ss_pred ---CccccCCCEEEEechhhhcccCCcHHHHHHHHHhCC------------------------cCCeEEEEeCCCCHHHH
Confidence 25678999999999999987 678888899998887 6789999999998643
Q ss_pred HHHHHh
Q 012337 409 DFRKKL 414 (465)
Q Consensus 409 ~~~~~l 414 (465)
.+..++
T Consensus 307 ~~~~~~ 312 (508)
T 3fho_A 307 KYAERF 312 (508)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 344443
No 37
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.93 E-value=2.9e-25 Score=235.35 Aligned_cols=171 Identities=19% Similarity=0.203 Sum_probs=132.5
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 193 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
...|+|+|.++++.++ +++|+++++|||||||++|++|+++.+... ....++++|||+||+
T Consensus 5 ~~~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P~~ 65 (556)
T 4a2p_A 5 TKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLATKV 65 (556)
T ss_dssp ---CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECSSH
T ss_pred CCCCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHHhC------------------cccCCCeEEEEeCCH
Confidence 3489999999999997 689999999999999999999999887421 122367899999999
Q ss_pred HHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhh
Q 012337 273 ELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 273 ~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll 352 (465)
+|+.|+++.+..++...++++..++|+.....+...+..+++|+||||++|.+++..+. ...+..+.+|||||||++.
T Consensus 66 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~ 143 (556)
T 4a2p_A 66 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTT 143 (556)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCS
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccC
Confidence 99999999999999888999999999997766666666779999999999999996542 1268899999999999999
Q ss_pred hcCCHHHHH--HHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 353 ENGHFRELQ--SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 353 ~~~~~~~l~--~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
+++.+..+. .+...+.. ....+|+|+||||++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 144 GNHPYNVLMTRYLEQKFNS---------------------ASQLPQILGLTASVG 177 (556)
T ss_dssp TTSHHHHHHHHHHHHHHCC------------------------CCEEEEEESCCC
T ss_pred CcchHHHHHHHHHHhhhcc---------------------cCCCCeEEEEeCCcc
Confidence 877655542 22222221 114689999999995
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.92 E-value=1.7e-25 Score=262.22 Aligned_cols=191 Identities=17% Similarity=0.215 Sum_probs=151.0
Q ss_pred CCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 192 GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 192 g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
||+.|+++|.+++|.+++.++|+|++||||||||++|.++++..+.+.... .......+.++|||+|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~------------~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINM------------DGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCT------------TSSCCTTSCEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccc------------cccccCCCCEEEEECCH
Confidence 799999999999999998899999999999999999999999998643110 01223456799999999
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHh
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~l 351 (465)
|+||.|+++.|.+.+...|++|..++|+...... ....++||||||+++..++.+. .....++.+++|||||+|.|
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~-~~~~~l~~v~~vIiDEvH~l 219 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKG-GERTYTQLVRLIILDEIHLL 219 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSS-TTHHHHTTEEEEEETTGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCC-ccchhhcCcCEEEEecchhc
Confidence 9999999999999999999999999999865332 1246899999999986665442 22234789999999999977
Q ss_pred hhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhh
Q 012337 352 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 416 (465)
Q Consensus 352 l~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 416 (465)
.+ .++..++.++.++.. ........+|+|++|||++|..++++||..
T Consensus 220 ~d-~RG~~lE~~l~rl~~-----------------~~~~~~~~~riI~LSATl~N~~dvA~wL~~ 266 (1724)
T 4f92_B 220 HD-DRGPVLEALVARAIR-----------------NIEMTQEDVRLIGLSATLPNYEDVATFLRV 266 (1724)
T ss_dssp GS-TTHHHHHHHHHHHHH-----------------HHHHHTCCCEEEEEECSCTTHHHHHHHTTC
T ss_pred CC-ccHHHHHHHHHHHHH-----------------HHHhCCCCCcEEEEecccCCHHHHHHHhCC
Confidence 64 677777777654320 000111578999999999999999999965
No 39
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.92 E-value=7.1e-25 Score=234.28 Aligned_cols=183 Identities=19% Similarity=0.237 Sum_probs=142.9
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 012337 176 NELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEA 254 (465)
Q Consensus 176 ~~l~l~~~l~~~l~~-~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~ 254 (465)
.++++++.+...|.. +||..|+|+|.++|+.++ +|+|+++++|||+|||++|++|++..
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il-~g~d~lv~~pTGsGKTl~~~lpal~~------------------- 83 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTM-AGKEVFLVMPTGGGKSLCYQLPALCS------------------- 83 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHH-TTCCEEEECCTTSCTTHHHHHHHHTS-------------------
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEEECCCChHHHHHHHHHHHc-------------------
Confidence 457889999999998 799999999999999997 69999999999999999999999742
Q ss_pred hhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH------hCCCcEEEeChHHHHH---
Q 012337 255 EKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL------KARPELVVGTPGRLWE--- 325 (465)
Q Consensus 255 ~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~------~~~~dIiV~TP~~L~~--- 325 (465)
..++|||+||++|+.|+++.+..+ ++.+..++|+.........+ ...++|+|+||++|..
T Consensus 84 -------~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~ 152 (591)
T 2v1x_A 84 -------DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM 152 (591)
T ss_dssp -------SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHH
T ss_pred -------CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHH
Confidence 237999999999999999999987 78899999998876554332 3578999999998742
Q ss_pred HHhCCCccccccCceeEEEecchhHhhhcC--CHHHHH---HHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEE
Q 012337 326 LMSGGEKHLVELHTLSFFVLDEADRMIENG--HFRELQ---SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVF 400 (465)
Q Consensus 326 ~l~~~~~~~~~l~~i~~lViDEah~ll~~~--~~~~l~---~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~ 400 (465)
++.. -.....+..+.+|||||||++.+|| |...+. .+...+ +.+|+|+|
T Consensus 153 ~~~~-l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~-------------------------~~~~ii~l 206 (591)
T 2v1x_A 153 FMSR-LEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF-------------------------PNASLIGL 206 (591)
T ss_dssp HHHH-HHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC-------------------------TTSEEEEE
T ss_pred HHHH-HHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC-------------------------CCCcEEEE
Confidence 2211 0112457899999999999999888 433322 233333 45799999
Q ss_pred eeeccCc--HHHHHHhh
Q 012337 401 SATIALS--ADFRKKLK 415 (465)
Q Consensus 401 SATl~~~--~~~~~~l~ 415 (465)
|||++.. .++..+|.
T Consensus 207 SAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 207 TATATNHVLTDAQKILC 223 (591)
T ss_dssp ESSCCHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHHHhC
Confidence 9999854 23444543
No 40
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.92 E-value=1.4e-24 Score=229.61 Aligned_cols=171 Identities=18% Similarity=0.226 Sum_probs=137.3
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+|+|.++++.++ +++++++++|||+|||++|++|+++.+... ....++++|||+||++|
T Consensus 4 ~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~~~~lil~P~~~L 64 (555)
T 3tbk_A 4 KPRNYQLELALPAK-KGKNTIICAPTGCGKTFVSLLICEHHLKKF------------------PCGQKGKVVFFANQIPV 64 (555)
T ss_dssp CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECSSHHH
T ss_pred CCcHHHHHHHHHHh-CCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------------ccCCCCEEEEEeCCHHH
Confidence 79999999999997 699999999999999999999999988531 12236789999999999
Q ss_pred HHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhc
Q 012337 275 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~ 354 (465)
+.|+++.+..++...++.+..++|+.....+...+..+++|+||||++|..++..+. ...+..+.+|||||||++...
T Consensus 65 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~ 142 (555)
T 3tbk_A 65 YEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKN 142 (555)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTT
T ss_pred HHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCc
Confidence 999999999999988999999999997665555666679999999999999997542 125788999999999999877
Q ss_pred CCHHHHH-HHHHh-CCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 355 GHFRELQ-SIIDM-LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 355 ~~~~~l~-~i~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
+.+..+. ..+.. +.. .....+|+|+||||++.
T Consensus 143 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 143 HPYNQIMFRYLDHKLGE--------------------SRDPLPQVVGLTASVGV 176 (555)
T ss_dssp CHHHHHHHHHHHHHTSS--------------------CCSCCCEEEEEESCCCC
T ss_pred chHHHHHHHHHHhhhcc--------------------ccCCCCeEEEEecCccc
Confidence 6444433 22222 111 11145799999999964
No 41
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.91 E-value=2e-24 Score=235.73 Aligned_cols=180 Identities=17% Similarity=0.174 Sum_probs=137.6
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 012337 185 MKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 264 (465)
Q Consensus 185 ~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (465)
..++..+||..|+|+|.++++.++ +|+|+|+++|||+|||++|++|+++++... ....+++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l-~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~ 63 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKF------------------PQGQKGK 63 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHS------------------CTTCCCC
T ss_pred CCcccccCCCCccHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHHHHhC------------------ccCCCCe
Confidence 345677899999999999999987 699999999999999999999999887532 1122368
Q ss_pred EEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEE
Q 012337 265 ALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 344 (465)
Q Consensus 265 vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lV 344 (465)
+|||+||++|+.|+++.+..++...++++..++|+.....+...+..+++|+||||++|.+.+..+. ...++.+.+||
T Consensus 64 ~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vV 141 (696)
T 2ykg_A 64 VVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMI 141 (696)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEE
Confidence 9999999999999999999998888999999999987655555555679999999999999997542 12588999999
Q ss_pred ecchhHhhhcCCHHHHHH-HHH-hCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 345 LDEADRMIENGHFRELQS-IID-MLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 345 iDEah~ll~~~~~~~l~~-i~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
|||||++.....+..+.. .+. .+. ......+|+|+||||+.
T Consensus 142 iDEaH~~~~~~~~~~i~~~~l~~~~~--------------------~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 142 FDECHNTSKQHPYNMIMFNYLDQKLG--------------------GSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EETGGGCSTTCHHHHHHHHHHHHHHT--------------------TCCSCCCEEEEEESCCC
T ss_pred EeCCCcccCcccHHHHHHHHHHHhhc--------------------ccCCCCCeEEEEeCccc
Confidence 999999875553333331 111 111 01115689999999997
No 42
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.3e-24 Score=242.43 Aligned_cols=163 Identities=22% Similarity=0.296 Sum_probs=142.0
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc
Q 012337 190 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 269 (465)
Q Consensus 190 ~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 269 (465)
.++| .|+|+|.++++.++ +++++++++|||||||++|.++++..+. .+.++||++
T Consensus 82 ~~~f-~L~~~Q~eai~~l~-~g~~vLV~apTGSGKTlva~lai~~~l~-----------------------~g~rvL~l~ 136 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLK-----------------------NKQRVIYTS 136 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHH-HTCEEEEECCTTSCHHHHHHHHHHHHHH-----------------------TTCEEEEEE
T ss_pred hCCC-CCCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHhc-----------------------cCCeEEEEC
Confidence 3567 59999999999986 6999999999999999999999988762 145899999
Q ss_pred ccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchh
Q 012337 270 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEAD 349 (465)
Q Consensus 270 Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah 349 (465)
||++|+.|+++.|..++. .++.++|+.... ..++|+|+||++|..++.++ ...+.++.+|||||||
T Consensus 137 PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~---~~~l~~l~lVViDEaH 202 (1010)
T 2xgj_A 137 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRG---SEVMREVAWVIFDEVH 202 (1010)
T ss_dssp SSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHT---CTTGGGEEEEEEETGG
T ss_pred ChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcC---cchhhcCCEEEEechh
Confidence 999999999999999875 677788887642 35799999999999988654 2568899999999999
Q ss_pred HhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhh
Q 012337 350 RMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLK 415 (465)
Q Consensus 350 ~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~ 415 (465)
+|.++++...+..++..++ ..+|+|+||||+++..+|..|+.
T Consensus 203 ~l~d~~rg~~~e~il~~l~------------------------~~~~il~LSATi~n~~e~a~~l~ 244 (1010)
T 2xgj_A 203 YMRDKERGVVWEETIILLP------------------------DKVRYVFLSATIPNAMEFAEWIC 244 (1010)
T ss_dssp GGGCTTTHHHHHHHHHHSC------------------------TTCEEEEEECCCTTHHHHHHHHH
T ss_pred hhcccchhHHHHHHHHhcC------------------------CCCeEEEEcCCCCCHHHHHHHHH
Confidence 9999999999999999887 67899999999999999999986
No 43
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.91 E-value=1.2e-24 Score=234.67 Aligned_cols=150 Identities=21% Similarity=0.304 Sum_probs=126.0
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc
Q 012337 190 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 269 (465)
Q Consensus 190 ~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 269 (465)
.+|| .|||+|..++|.++ +|+ |+.++||+|||++|+||++.+.+ .+++|+||+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll-~G~--Iaea~TGeGKTlaf~LP~~l~aL-----------------------~g~~vlVlt 131 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALH-DGN--IAEMKTGEGKTLTSTLPVYLNAL-----------------------TGKGVHVVT 131 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTS--EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCEEEEE
T ss_pred HcCC-CCcHHHHHhhHHHh-CCC--EEEccCCcHHHHHHHHHHHHHHH-----------------------cCCCEEEEe
Confidence 4899 99999999999886 687 99999999999999999985432 245799999
Q ss_pred ccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCC---ccccccCceeEEEe
Q 012337 270 PTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVL 345 (465)
Q Consensus 270 Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~i~~lVi 345 (465)
|||+||.|+++.+..++..+++++++++||.+...+.. ..++||+||||++| .++|...- .....++.+.++||
T Consensus 132 ptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 132 VNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEE
Confidence 99999999999999999999999999999998754433 34689999999999 66664321 12355789999999
Q ss_pred cchhHhh-hcC---------------CHHHHHHHHHhCC
Q 012337 346 DEADRMI-ENG---------------HFRELQSIIDMLP 368 (465)
Q Consensus 346 DEah~ll-~~~---------------~~~~l~~i~~~l~ 368 (465)
||||+|| |++ |+..+..|+..|+
T Consensus 210 DEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~ 248 (844)
T 1tf5_A 210 DEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLK 248 (844)
T ss_dssp ETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCC
T ss_pred CchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCc
Confidence 9999998 764 6788999998886
No 44
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.91 E-value=1.4e-24 Score=229.35 Aligned_cols=184 Identities=19% Similarity=0.243 Sum_probs=145.8
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 173 DAWNELRLHPLLMKSIYR-LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~-~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
..|++|+|++.+...|.+ +||..|+|+|.++|+.++ +|+|+++++|||+|||++|++|++..
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~~lp~l~~---------------- 64 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLL---------------- 64 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHS----------------
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEECCCCcHHHHHHHHHHHHh----------------
Confidence 578999999999999998 899999999999999997 69999999999999999999998742
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHH----HHhCCCcEEEeChHHHHHHH
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER----LLKARPELVVGTPGRLWELM 327 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~----~~~~~~dIiV~TP~~L~~~l 327 (465)
..++|||+|+++|+.|+++.+..+ ++.+..++|+........ .....++|+|+||++|....
T Consensus 65 ----------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~ 130 (523)
T 1oyw_A 65 ----------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDN 130 (523)
T ss_dssp ----------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTT
T ss_pred ----------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChH
Confidence 136999999999999999999875 778888889887654432 23456899999999985211
Q ss_pred hCCCccccccCceeEEEecchhHhhhcC--C---HHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEee
Q 012337 328 SGGEKHLVELHTLSFFVLDEADRMIENG--H---FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSA 402 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lViDEah~ll~~~--~---~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SA 402 (465)
....+....+.+|||||||++.+|| | +..+..++..++ .+|+++|||
T Consensus 131 ---~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~-------------------------~~~~i~lSA 182 (523)
T 1oyw_A 131 ---FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-------------------------TLPFMALTA 182 (523)
T ss_dssp ---HHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT-------------------------TSCEEEEES
T ss_pred ---HHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCC-------------------------CCCEEEEeC
Confidence 1111334789999999999999887 3 333444454443 578999999
Q ss_pred eccCc--HHHHHHhh
Q 012337 403 TIALS--ADFRKKLK 415 (465)
Q Consensus 403 Tl~~~--~~~~~~l~ 415 (465)
|++.. .++..++.
T Consensus 183 T~~~~~~~~i~~~l~ 197 (523)
T 1oyw_A 183 TADDTTRQDIVRLLG 197 (523)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC
Confidence 99864 35566664
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.91 E-value=5.5e-24 Score=235.75 Aligned_cols=173 Identities=18% Similarity=0.211 Sum_probs=133.7
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
+|+..|+|+|.++++.++ +++++|+++|||+|||++|++|++.++... ....++++|||+|
T Consensus 244 ~g~~~l~~~Q~~~i~~~l-~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLAT 304 (797)
T ss_dssp ----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTC------------------CSSCCCCEEEECS
T ss_pred cCCCCCCHHHHHHHHHHH-hCCCEEEEeCCCChHHHHHHHHHHHHHHhc------------------cccCCCeEEEEeC
Confidence 567899999999999997 689999999999999999999999988521 1223668999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 350 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ 350 (465)
|++|+.|+++.+..++...+++++.++|+.....+...+..+++|+||||++|..++..+. ...++.+.+|||||||+
T Consensus 305 t~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~iViDEaH~ 382 (797)
T 4a2q_A 305 KVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHN 382 (797)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEETTGGG
T ss_pred CHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc--ccccccCCEEEEECccc
Confidence 9999999999999999888999999999998776666777789999999999999997542 12588999999999999
Q ss_pred hhhcCCHHHHHHH-HHh-CCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 351 MIENGHFRELQSI-IDM-LPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 351 ll~~~~~~~l~~i-~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
+...+.+..+... +.. +.. ....+|+|+||||++
T Consensus 383 ~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 383 TTGNHPYNVLMTRYLEQKFNS---------------------ASQLPQILGLTASVG 418 (797)
T ss_dssp CSTTSHHHHHHHHHHHHHHTT---------------------CCCCCEEEEEESCCC
T ss_pred cCCCccHHHHHHHHHHHhhcc---------------------CCCCCeEEEEcCCcc
Confidence 9876554444322 211 110 115689999999995
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=5.2e-24 Score=241.51 Aligned_cols=172 Identities=20% Similarity=0.202 Sum_probs=138.6
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc
Q 012337 190 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 269 (465)
Q Consensus 190 ~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 269 (465)
..|| .|+|+|.++||.++ +|+|++++||||||||++|+++++..+ ..++++|||+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il-~g~dvlv~ApTGSGKTl~~l~~il~~~-----------------------~~~~~~Lil~ 128 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLA-----------------------RKGKKSALVF 128 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHT-TTCCEEECCSTTCCHHHHHHHHHHHHH-----------------------TTTCCEEEEE
T ss_pred hcCC-CCCHHHHHHHHHHH-cCCCEEEEeCCCCcHHHHHHHHHHHHH-----------------------hcCCeEEEEe
Confidence 3688 69999999999997 699999999999999998888887765 1356899999
Q ss_pred ccHHHHHHHHHHHHHHHccCCceEEEEecCCCH---HHHHHHHhCC-CcEEEeChHHHHHHHhCCCccccccCceeEEEe
Q 012337 270 PTRELALQVTDHLKEVAKGINVRVVPIVGGMST---EKQERLLKAR-PELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 345 (465)
Q Consensus 270 Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~---~~~~~~~~~~-~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lVi 345 (465)
|||+||.|+++.+..++ ..+++++.++||.+. ..+...+..+ ++|+||||++|.+++.. ..++++++|||
T Consensus 129 PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lVi 202 (1104)
T 4ddu_A 129 PTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFV 202 (1104)
T ss_dssp SSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEE
T ss_pred chHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEE
Confidence 99999999999999977 778999999999987 5666666665 99999999999888752 56789999999
Q ss_pred cchhH----------hhh-cCCHHH-HHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 346 DEADR----------MIE-NGHFRE-LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 346 DEah~----------ll~-~~~~~~-l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
||||+ |++ +||... +..++..++.. ... -....+..+|+++||||+.
T Consensus 203 DEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~-~~~------------~~~~~~~~~q~ll~SAT~~ 261 (1104)
T 4ddu_A 203 DDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQG-KIY------------ERPKNLKPGILVVSSATAK 261 (1104)
T ss_dssp SCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHT-SCC------------CCCSSCCCCEEEEECBSSC
T ss_pred eCCCccccccccchhhhHhcCCCHHHHHHHHHhcccc-hhh------------hhhccCCCceEEEEcCCCC
Confidence 99965 555 888887 88888876510 000 0000114689999999953
No 47
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.91 E-value=2.1e-24 Score=242.69 Aligned_cols=165 Identities=21% Similarity=0.293 Sum_probs=142.0
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
++| .|+++|.++|+.++ +|+++++++|||||||++|+++++..+. .++++||++|
T Consensus 36 ~~f-~l~~~Q~~aI~~il-~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------------------~g~~vlvl~P 90 (997)
T 4a4z_A 36 WPF-ELDTFQKEAVYHLE-QGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------------------NMTKTIYTSP 90 (997)
T ss_dssp CSS-CCCHHHHHHHHHHH-TTCEEEEECCTTSCSHHHHHHHHHHHHH-----------------------TTCEEEEEES
T ss_pred CCC-CCCHHHHHHHHHHH-cCCCEEEEECCCCcHHHHHHHHHHHHHh-----------------------cCCeEEEEeC
Confidence 456 58999999999986 6999999999999999999999887652 2458999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 350 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ 350 (465)
|++|+.|+++.+..++. ++.+..++|+... ...++|+|+||++|.+++..+ ...+..+.+|||||||+
T Consensus 91 traLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~---~~~l~~l~lvViDEaH~ 158 (997)
T 4a4z_A 91 IKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRG---ADLIRDVEFVIFDEVHY 158 (997)
T ss_dssp CGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHT---CSGGGGEEEEEECCTTC
T ss_pred CHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhC---chhhcCCCEEEEECccc
Confidence 99999999999988643 6788889998753 245799999999999988654 25578999999999999
Q ss_pred hhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhh
Q 012337 351 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 416 (465)
Q Consensus 351 ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 416 (465)
+.++++...+..++..++ ..+|+|+||||+++..+|..|+..
T Consensus 159 l~d~~~g~~~e~ii~~l~------------------------~~v~iIlLSAT~~n~~ef~~~l~~ 200 (997)
T 4a4z_A 159 VNDQDRGVVWEEVIIMLP------------------------QHVKFILLSATVPNTYEFANWIGR 200 (997)
T ss_dssp CCTTCTTCCHHHHHHHSC------------------------TTCEEEEEECCCTTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHhcc------------------------cCCCEEEEcCCCCChHHHHHHHhc
Confidence 999999888999999987 678999999999999999999864
No 48
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=4.4e-24 Score=198.42 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=110.3
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 193 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
...|+++|.++++.++ +++++++++|||+|||++|+++++..+..... ...++++||++||+
T Consensus 31 ~~~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-----------------~~~~~~~lil~p~~ 92 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-----------------ASEPGKVIVLVNKV 92 (216)
T ss_dssp CCCCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-----------------TTCCCCEEEEESSH
T ss_pred CCCchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-----------------ccCCCcEEEEECHH
Confidence 3489999999999987 68999999999999999999999988754321 12356899999999
Q ss_pred HHHHH-HHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCc---cccccCceeEEEecch
Q 012337 273 ELALQ-VTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEK---HLVELHTLSFFVLDEA 348 (465)
Q Consensus 273 ~La~Q-v~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~---~~~~l~~i~~lViDEa 348 (465)
+|+.| +.+.+..+... ++.+..++|+.........+...++|+|+||+.|..++..... ....+..+.+||||||
T Consensus 93 ~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEa 171 (216)
T 3b6e_A 93 LLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 171 (216)
T ss_dssp HHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC
T ss_pred HHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECc
Confidence 99999 77888887654 7788888887654433333445689999999999998865321 1245788999999999
Q ss_pred hHhhhcCCHHHHHHH
Q 012337 349 DRMIENGHFRELQSI 363 (465)
Q Consensus 349 h~ll~~~~~~~l~~i 363 (465)
|++...+++..+...
T Consensus 172 h~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 172 HHTNKEAVYNNIMRH 186 (216)
T ss_dssp -------CHHHHHHH
T ss_pred hhhccCCcHHHHHHH
Confidence 999977787776433
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.90 E-value=5e-24 Score=241.43 Aligned_cols=170 Identities=19% Similarity=0.255 Sum_probs=138.7
Q ss_pred HCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEc
Q 012337 190 RLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIIT 269 (465)
Q Consensus 190 ~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~ 269 (465)
.+||. | ++|.++||.++ +|+|++++||||||||+ |++|++.++.. .++++|||+
T Consensus 53 ~~g~~-p-~iQ~~ai~~il-~g~dvlv~apTGSGKTl-~~lp~l~~~~~----------------------~~~~~lil~ 106 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRIL-RKESFAATAPTGVGKTS-FGLAMSLFLAL----------------------KGKRCYVIF 106 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHH-TTCCEECCCCBTSCSHH-HHHHHHHHHHT----------------------TSCCEEEEE
T ss_pred hcCCC-H-HHHHHHHHHHH-hCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------------------cCCeEEEEe
Confidence 48998 9 99999999997 69999999999999998 99999887742 256899999
Q ss_pred ccHHHHHHHHHHHHHHHccCCc----eEEEEecCCCHHHH---HHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeE
Q 012337 270 PTRELALQVTDHLKEVAKGINV----RVVPIVGGMSTEKQ---ERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 342 (465)
Q Consensus 270 Ptr~La~Qv~~~l~~l~~~~~~----~v~~~~gg~~~~~~---~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~ 342 (465)
|||+||.|+++.+..++...++ .++.++||.+...+ ...+.. ++|+||||++|.+++.+ |+++++
T Consensus 107 PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~~ 178 (1054)
T 1gku_B 107 PTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFDF 178 (1054)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCSE
T ss_pred ccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCCE
Confidence 9999999999999999988888 89999999987663 334455 99999999999987742 679999
Q ss_pred EEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 343 FVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 343 lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
|||||||+|++ +...+..++..+...... ........+|+++||||++...
T Consensus 179 lViDEah~~l~--~~~~~~~i~~~lgf~~~~-------------~~~~~~~~~q~~l~SAT~t~~~ 229 (1054)
T 1gku_B 179 IFVDDVDAILK--ASKNVDKLLHLLGFHYDL-------------KTKSWVGEARGCLMVSTATAKK 229 (1054)
T ss_dssp EEESCHHHHHT--STHHHHHHHHHTTEEEET-------------TTTEEEECCSSEEEECCCCSCC
T ss_pred EEEeChhhhhh--ccccHHHHHHHhCcchhh-------------hhhhcccCCceEEEEecCCCch
Confidence 99999999997 567888888877521100 0011124679999999998764
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.90 E-value=1.9e-23 Score=224.89 Aligned_cols=150 Identities=18% Similarity=0.225 Sum_probs=113.9
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
+|. .|+++|..++|.++ +|+ |+.++||||||++|++|++.+.+ .+++|+||+|
T Consensus 71 lg~-~p~~VQ~~~i~~ll-~G~--Iaem~TGsGKTlaf~LP~l~~~l-----------------------~g~~vlVltP 123 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLN-ERC--IAEMRTGEGKTLTATLPAYLNAL-----------------------TGKGVHVVTV 123 (853)
T ss_dssp HSC-CCCHHHHHHHHHHH-SSE--EEECCTTSCHHHHHHHHHHHHHT-----------------------TSSCCEEEES
T ss_pred cCC-CCChHHHhhccccc-CCe--eeeecCCchHHHHHHHHHHHHHH-----------------------cCCcEEEEcC
Confidence 676 89999999999886 677 99999999999999999986542 2457999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCC---ccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~i~~lViD 346 (465)
||+||.|+++.+..++..+++++++++||.+... +.+..+++|+||||++| .++|..+. .....++.+.++|||
T Consensus 124 TreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlD 201 (853)
T 2fsf_A 124 NDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVD 201 (853)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEES
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEEC
Confidence 9999999999999999999999999999998743 33444699999999999 78776432 123557899999999
Q ss_pred chhHhh-hc---------------CCHHHHHHHHHhCCC
Q 012337 347 EADRMI-EN---------------GHFRELQSIIDMLPM 369 (465)
Q Consensus 347 Eah~ll-~~---------------~~~~~l~~i~~~l~~ 369 (465)
|||+|| ++ +++..+..|+..|+.
T Consensus 202 EaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 202 EVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp CHHHHTTTTTTCEEEEEEC--------------------
T ss_pred chHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 999999 54 367888888888863
No 51
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.3e-23 Score=196.35 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=129.5
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCC
Q 012337 181 HPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPK 260 (465)
Q Consensus 181 ~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~ 260 (465)
++.+...+.......++++|.++++.+. +|++++++|+||||||++|.++++..+... ...
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~-~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~------------------~~~ 107 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAIS-QNSVVIIRGATGCGKTTQVPQFILDDFIQN------------------DRA 107 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHH-HCSEEEEECCTTSSHHHHHHHHHHHHHHHT------------------TCG
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCEEEEEeCCCCCcHHhHHHHHhcchhhc------------------CCC
Confidence 3333333333333467999999999985 799999999999999999999998876532 112
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHc-cCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCc
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAK-GINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT 339 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~-~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 339 (465)
.++++||++|||+|+.|+++.+..... ..+..++....... .....+++|+||||++|.+++.. .+++
T Consensus 108 ~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~------~l~~ 176 (235)
T 3llm_A 108 AECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA------GIRG 176 (235)
T ss_dssp GGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH------CCTT
T ss_pred CceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh------hhcC
Confidence 356899999999999999988876543 22333333221110 00114578999999999999854 3889
Q ss_pred eeEEEecchhHh-hhcCCH-HHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHHhhh
Q 012337 340 LSFFVLDEADRM-IENGHF-RELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKKLKH 416 (465)
Q Consensus 340 i~~lViDEah~l-l~~~~~-~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~l~~ 416 (465)
+++|||||||.+ +++++. ..+..++... ..+|+|+||||++... +.+++..
T Consensus 177 ~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-------------------------~~~~~il~SAT~~~~~-~~~~~~~ 229 (235)
T 3llm_A 177 ISHVIVDEIHERDINTDFLLVVLRDVVQAY-------------------------PEVRIVLMSATIDTSM-FCEYFFN 229 (235)
T ss_dssp CCEEEECCTTSCCHHHHHHHHHHHHHHHHC-------------------------TTSEEEEEECSSCCHH-HHHHTTS
T ss_pred CcEEEEECCccCCcchHHHHHHHHHHHhhC-------------------------CCCeEEEEecCCCHHH-HHHHcCC
Confidence 999999999985 667776 4566666554 3579999999998654 7777643
No 52
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.89 E-value=4.9e-23 Score=231.26 Aligned_cols=174 Identities=18% Similarity=0.191 Sum_probs=131.5
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+..|+|+|.++++.++ +|+++|+++|||+|||++|++|++.++... ....++++|||+|
T Consensus 244 ~~~~~~r~~Q~~ai~~il-~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~------------------~~~~~~~vLvl~P 304 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNM------------------PAGRKAKVVFLAT 304 (936)
T ss_dssp ----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHTTTTTC------------------CSSCCCCEEEECS
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCEEEEeCCCchHHHHHHHHHHHHHHhc------------------cccCCCeEEEEeC
Confidence 457799999999999997 699999999999999999999999876321 1122568999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 350 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ 350 (465)
|++|+.|+++.+..++...++++..++|+.....+...+..+++|+|+||++|.+++..+. ...+.++.+|||||||+
T Consensus 305 t~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--~~~l~~~~liViDEaH~ 382 (936)
T 4a2w_A 305 KVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHN 382 (936)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS--CCCGGGCSEEEEETGGG
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc--cccccCCCEEEEECccc
Confidence 9999999999999999888999999999987766555566678999999999999997542 22578899999999999
Q ss_pred hhhcCCHHHHH-HHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 351 MIENGHFRELQ-SIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 351 ll~~~~~~~l~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
+...+.+..+. .++..... .....+|+|+||||+.
T Consensus 383 ~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 383 TTGNHPYNVLMTRYLEQKFN--------------------SASQLPQILGLTASVG 418 (936)
T ss_dssp CSTTCHHHHHHHHHHHHHHT--------------------TCSCCCEEEEEESCCC
T ss_pred cCCCccHHHHHHHHHHHhhc--------------------cCCCcCeEEEecCCcc
Confidence 98665444433 22221100 0115689999999995
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.88 E-value=1.6e-22 Score=218.20 Aligned_cols=149 Identities=19% Similarity=0.312 Sum_probs=125.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
+|+ .|+++|..++|.++ +|+ |+.++||+|||++|++|++.+.+ .+.+|+||+|
T Consensus 108 lG~-rP~~VQ~~~ip~Ll-~G~--Iaem~TGeGKTLa~~LP~~l~aL-----------------------~g~~v~VvTp 160 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALH-LGN--VAEMKTGEGKTLTCVLPAYLNAL-----------------------AGNGVHIVTV 160 (922)
T ss_dssp HSC-CCCHHHHHHHHHHH-TTE--EEECCTTSCHHHHTHHHHHHHHT-----------------------TTSCEEEEES
T ss_pred cCC-CCCHHHHHHHHhHh-cCC--EEEecCCCccHHHHHHHHHHHHH-----------------------hCCCeEEEeC
Confidence 788 99999999999886 677 99999999999999999975442 1347999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCC---ccccccCceeEEEec
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLD 346 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~i~~lViD 346 (465)
|++||.|+++.+..++..+|+++++++||.+..... ...++||+||||++| .++|...- .....++.+.++|||
T Consensus 161 TreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVD 238 (922)
T 1nkt_A 161 NDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVD 238 (922)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEET
T ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEe
Confidence 999999999999999999999999999999865433 334689999999999 77775431 123557899999999
Q ss_pred chhHhh-h---------------cCCHHHHHHHHHhCC
Q 012337 347 EADRMI-E---------------NGHFRELQSIIDMLP 368 (465)
Q Consensus 347 Eah~ll-~---------------~~~~~~l~~i~~~l~ 368 (465)
|||+|| | ++|+..+..|+..|+
T Consensus 239 EaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~ 276 (922)
T 1nkt_A 239 EVDSILIDEARTPLIISGPADGASNWYTEFARLAPLME 276 (922)
T ss_dssp THHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSC
T ss_pred ChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCc
Confidence 999999 4 357899999999996
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.86 E-value=2.3e-22 Score=219.51 Aligned_cols=148 Identities=18% Similarity=0.211 Sum_probs=115.6
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+|+|.++++.++ +|+++|+++|||+|||++|++|++.++...+.. ..+.++|||+||++|
T Consensus 7 ~l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----------------~~~~~vlvl~P~~~L 68 (699)
T 4gl2_A 7 QLRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----------------SEPGKVIVLVNKVLL 68 (699)
T ss_dssp CCCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----------------TCCCCBCCEESCSHH
T ss_pred CccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----------------CCCCeEEEEECCHHH
Confidence 79999999999997 689999999999999999999999988765321 123579999999999
Q ss_pred HHHH-HHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC---ccccccCceeEEEecchhH
Q 012337 275 ALQV-TDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE---KHLVELHTLSFFVLDEADR 350 (465)
Q Consensus 275 a~Qv-~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~---~~~~~l~~i~~lViDEah~ 350 (465)
+.|+ ++.+..++.. ++.+..++|+.........+...++|+|+||++|...+.... .....+..+.+|||||||+
T Consensus 69 ~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~ 147 (699)
T 4gl2_A 69 VEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 147 (699)
T ss_dssp HHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG
T ss_pred HHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc
Confidence 9999 9999998764 489999999987655555566789999999999998884321 2235678999999999999
Q ss_pred hhhcCCHHHHH
Q 012337 351 MIENGHFRELQ 361 (465)
Q Consensus 351 ll~~~~~~~l~ 361 (465)
+...+++..+.
T Consensus 148 ~~~~~~~~~i~ 158 (699)
T 4gl2_A 148 TNKEAVYNNIM 158 (699)
T ss_dssp CBTTBSSCSHH
T ss_pred cCccchHHHHH
Confidence 87555444433
No 55
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=2.8e-22 Score=195.02 Aligned_cols=154 Identities=22% Similarity=0.184 Sum_probs=121.1
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+++|.++++.++. +.+.+++++||+|||+++++++...+.. ...++|||+||++|
T Consensus 113 ~l~~~Q~~ai~~~l~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~~lil~Pt~~L 169 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTAL 169 (282)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHHHHHHH----------------------CSSEEEEECSSHHH
T ss_pred CccHHHHHHHHHHHh-cCCeEEEcCCCCCcHHHHHHHHHHHHHc----------------------CCCeEEEEECCHHH
Confidence 799999999999874 6788889999999999998887776531 12379999999999
Q ss_pred HHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhc
Q 012337 275 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~ 354 (465)
+.|+.+.+.++.......+..++||..... .....++|+|+||+.|.... ...+..+.+|||||||++..
T Consensus 170 ~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~- 239 (282)
T 1rif_A 170 TTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG- 239 (282)
T ss_dssp HHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH-
T ss_pred HHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc-
Confidence 999999999987666678888888865432 12246899999998874321 13477899999999999873
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCcH
Q 012337 355 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSA 408 (465)
Q Consensus 355 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~ 408 (465)
..+..++..+. ..+++++||||+++..
T Consensus 240 ---~~~~~il~~~~------------------------~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 240 ---KSISSIISGLN------------------------NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp ---HHHHHHTTTCT------------------------TCCEEEEECSSCCTTS
T ss_pred ---ccHHHHHHHhh------------------------cCCeEEEEeCCCCCcc
Confidence 35666666664 4689999999998653
No 56
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=4e-21 Score=198.58 Aligned_cols=161 Identities=22% Similarity=0.289 Sum_probs=131.7
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+|+|.++++.++ ++ ++++++|||+|||++|+++++..+.. .+.++|||+||++|
T Consensus 9 ~l~~~Q~~~i~~~~-~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----------------------~~~~~liv~P~~~L 64 (494)
T 1wp9_A 9 QPRIYQEVIYAKCK-ET-NCLIVLPTGLGKTLIAMMIAEYRLTK----------------------YGGKVLMLAPTKPL 64 (494)
T ss_dssp CCCHHHHHHHHHGG-GS-CEEEECCTTSCHHHHHHHHHHHHHHH----------------------SCSCEEEECSSHHH
T ss_pred CccHHHHHHHHHHh-hC-CEEEEcCCCCCHHHHHHHHHHHHHhc----------------------CCCeEEEEECCHHH
Confidence 79999999999987 46 99999999999999999999887741 24579999999999
Q ss_pred HHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhc
Q 012337 275 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~ 354 (465)
+.|+.+.+.+++......+..++|+........ +..+++|+|+||+.|...+..+ ...+..+.+|||||||++...
T Consensus 65 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~---~~~~~~~~~vIiDEaH~~~~~ 140 (494)
T 1wp9_A 65 VLQHAESFRRLFNLPPEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAG---RISLEDVSLIVFDEAHRAVGN 140 (494)
T ss_dssp HHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTT---SCCTTSCSEEEEETGGGCSTT
T ss_pred HHHHHHHHHHHhCcchhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcC---CcchhhceEEEEECCcccCCC
Confidence 999999999987444568899999988765433 3346899999999999988653 256788999999999999866
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 355 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 355 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
..+..+...+.... ..+++++||||+.+.
T Consensus 141 ~~~~~~~~~~~~~~------------------------~~~~~l~lTaTp~~~ 169 (494)
T 1wp9_A 141 YAYVFIAREYKRQA------------------------KNPLVIGLTASPGST 169 (494)
T ss_dssp CHHHHHHHHHHHHC------------------------SSCCEEEEESCSCSS
T ss_pred CcHHHHHHHHHhcC------------------------CCCeEEEEecCCCCC
Confidence 66666666665544 567899999999854
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.85 E-value=6.3e-21 Score=208.59 Aligned_cols=138 Identities=25% Similarity=0.348 Sum_probs=114.8
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHhc---C--CcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 012337 182 PLLMKSIYRLGFKEPTPIQKACIPAAAHQ---G--KDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEK 256 (465)
Q Consensus 182 ~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~---~--~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~ 256 (465)
..+...+..++| .||++|.++|+.++.. + .+++++|+||||||++|++|++..+..
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------------------ 416 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------------------ 416 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------------------
Confidence 345555678999 8999999999998642 1 589999999999999999999988731
Q ss_pred cCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHH---HHhC-CCcEEEeChHHHHHHHhCCCc
Q 012337 257 YAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LLKA-RPELVVGTPGRLWELMSGGEK 332 (465)
Q Consensus 257 ~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~---~~~~-~~dIiV~TP~~L~~~l~~~~~ 332 (465)
+.++||++||++||.|+++.+..++...++++..++|+........ .+.. .++|+||||+.|..
T Consensus 417 -----g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------- 484 (780)
T 1gm5_A 417 -----GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------- 484 (780)
T ss_dssp -----TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------
T ss_pred -----CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------
Confidence 3589999999999999999999999888999999999998765433 2333 58999999987744
Q ss_pred cccccCceeEEEecchhHh
Q 012337 333 HLVELHTLSFFVLDEADRM 351 (465)
Q Consensus 333 ~~~~l~~i~~lViDEah~l 351 (465)
...+.++.+|||||||++
T Consensus 485 -~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 485 -DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp -CCCCSCCCEEEEESCCCC
T ss_pred -hhhccCCceEEecccchh
Confidence 145789999999999985
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.84 E-value=8.9e-21 Score=199.46 Aligned_cols=153 Identities=22% Similarity=0.197 Sum_probs=124.6
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+|+|.++++.++ ++++++++++||+|||++|+++++..+.. .+.++|||+||++|
T Consensus 113 ~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------------------~~~~vlvl~P~~~L 169 (510)
T 2oca_A 113 EPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN----------------------YEGKILIIVPTTAL 169 (510)
T ss_dssp CCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH----------------------CSSEEEEEESSHHH
T ss_pred CCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------------------CCCeEEEEECcHHH
Confidence 79999999999987 57899999999999999999988877631 13489999999999
Q ss_pred HHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhc
Q 012337 275 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIEN 354 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~ 354 (465)
+.|+++.+..+....++.+..++|+.....+ +...++|+|+||+.|... ....+.++.+|||||||++..
T Consensus 170 ~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~------~~~~~~~~~liIiDE~H~~~~- 239 (510)
T 2oca_A 170 TTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATG- 239 (510)
T ss_dssp HHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS------CGGGGGGEEEEEEETGGGCCH-
T ss_pred HHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc------hhhhhhcCCEEEEECCcCCCc-
Confidence 9999999998866666788899988776443 456789999999976432 124578899999999999864
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 355 GHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 355 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
..+..++..+. ..+++|+||||+++.
T Consensus 240 ---~~~~~il~~~~------------------------~~~~~l~lSATp~~~ 265 (510)
T 2oca_A 240 ---KSISSIISGLN------------------------NCMFKFGLSGSLRDG 265 (510)
T ss_dssp ---HHHHHHGGGCT------------------------TCCEEEEEESCGGGC
T ss_pred ---ccHHHHHHhcc------------------------cCcEEEEEEeCCCCC
Confidence 45666766665 567999999999654
No 59
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=8.4e-20 Score=196.45 Aligned_cols=133 Identities=21% Similarity=0.279 Sum_probs=112.3
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
+|+ .|+++|..++|.++ +|+ |+++.||+|||++|++|++...+ .+.+|+||+|
T Consensus 76 lG~-~Pt~VQ~~~ip~Ll-qG~--IaeakTGeGKTLvf~Lp~~L~aL-----------------------~G~qv~VvTP 128 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLH-EGK--IAEMKTGEGKTLVATLAVALNAL-----------------------TGKGVHVVTV 128 (997)
T ss_dssp TCC-CCCHHHHHHHHHHH-TTS--EEECCSTHHHHHHHHHHHHHHHT-----------------------TCSCCEEEES
T ss_pred hCC-CCcHHHHhhccccc-CCc--eeeccCCCchHHHHHHHHHHHHH-----------------------hCCCEEEEeC
Confidence 799 99999999999986 687 99999999999999999965442 1347999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHH-HHHHhCCC---ccccccC---ceeEE
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELH---TLSFF 343 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~---~i~~l 343 (465)
|++||.|.++.+..++..+++++++++||.+.... ....++||+||||++| +++|..+- .....++ .+.++
T Consensus 129 TreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~l 206 (997)
T 2ipc_A 129 NDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYA 206 (997)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceE
Confidence 99999999999999999999999999999986433 3334699999999999 78886542 1124577 89999
Q ss_pred EecchhHhh
Q 012337 344 VLDEADRMI 352 (465)
Q Consensus 344 ViDEah~ll 352 (465)
||||||.||
T Consensus 207 IIDEaDsmL 215 (997)
T 2ipc_A 207 IIDEVDSIL 215 (997)
T ss_dssp EETTHHHHT
T ss_pred EEechHHHH
Confidence 999999987
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.81 E-value=4.9e-21 Score=198.61 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=109.8
Q ss_pred CCCCCcHHHHHHHHHHHhcCCcE-EEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 192 GFKEPTPIQKACIPAAAHQGKDI-IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 192 g~~~p~~iQ~~~i~~~l~~~~dv-l~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
|+..|+|+|. +||.++. ++++ +++||||||||++|++|++.++.. .++++||++|
T Consensus 1 G~~q~~~iq~-~i~~~l~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----------------------~~~~~lvl~P 56 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALL----------------------RRLRTLILAP 56 (451)
T ss_dssp CCCCCSCCCC-CCGGGGS-TTCEEEECCCTTSSCCTTHHHHHHHHHHH----------------------TTCCEEEEES
T ss_pred CCCCCCCcHH-HHHHHHh-cCCeEEEECCCCCCHhhHHHHHHHHHHHh----------------------cCCcEEEECC
Confidence 6789999985 7999874 6655 999999999999999999987753 2468999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR 350 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ 350 (465)
||+||.|+++.+. ++.+....+.... ....+..|.|+|++.|.+.+... ..++++++|||||||+
T Consensus 57 tr~La~Q~~~~l~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~ 121 (451)
T 2jlq_A 57 TRVVAAEMEEALR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHF 121 (451)
T ss_dssp SHHHHHHHHHHTT------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTC
T ss_pred CHHHHHHHHHHhc------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCcc
Confidence 9999999999874 3333322222111 11234679999999998877543 4588999999999997
Q ss_pred hhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 351 MIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 351 ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
+ +.++...+..+..... ...+|+|+||||++.
T Consensus 122 ~-~~~~~~~~~~~~~~~~-----------------------~~~~~~i~~SAT~~~ 153 (451)
T 2jlq_A 122 T-DPCSVAARGYISTRVE-----------------------MGEAAAIFMTATPPG 153 (451)
T ss_dssp C-SHHHHHHHHHHHHHHH-----------------------TTSCEEEEECSSCTT
T ss_pred C-CcchHHHHHHHHHhhc-----------------------CCCceEEEEccCCCc
Confidence 6 3433333333322211 146899999999975
No 61
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.80 E-value=9.4e-19 Score=199.63 Aligned_cols=169 Identities=22% Similarity=0.242 Sum_probs=130.0
Q ss_pred CCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHHh---cCC--cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 178 LRLHPLLMKSIY-RLGFKEPTPIQKACIPAAAH---QGK--DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 178 l~l~~~l~~~l~-~~g~~~p~~iQ~~~i~~~l~---~~~--dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
+.+.......+. .++| .|||+|.++++.++. +++ |+|++++||+|||++|+++++..+.
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-------------- 650 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-------------- 650 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------------
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------------
Confidence 345555555553 4677 579999999999874 255 9999999999999999999887652
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHH---HhC-CCcEEEeChHHHHHHH
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERL---LKA-RPELVVGTPGRLWELM 327 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~---~~~-~~dIiV~TP~~L~~~l 327 (465)
.+.++|||+||++||.|+++.+.+++...++++..++|.......... +.. .++|+||||..|.
T Consensus 651 ---------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~--- 718 (1151)
T 2eyq_A 651 ---------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ--- 718 (1151)
T ss_dssp ---------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH---
T ss_pred ---------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh---
Confidence 245899999999999999999999888788899999888776544332 333 5899999997653
Q ss_pred hCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 328 SGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
. ...+.++.+|||||||++. .....++..++ ..+++++||||+.+.
T Consensus 719 -~----~~~~~~l~lvIiDEaH~~g-----~~~~~~l~~l~------------------------~~~~vl~lSATp~p~ 764 (1151)
T 2eyq_A 719 -S----DVKFKDLGLLIVDEEHRFG-----VRHKERIKAMR------------------------ANVDILTLTATPIPR 764 (1151)
T ss_dssp -S----CCCCSSEEEEEEESGGGSC-----HHHHHHHHHHH------------------------TTSEEEEEESSCCCH
T ss_pred -C----CccccccceEEEechHhcC-----hHHHHHHHHhc------------------------CCCCEEEEcCCCChh
Confidence 2 1457899999999999853 23344454444 568999999998643
No 62
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.79 E-value=8.5e-21 Score=203.52 Aligned_cols=167 Identities=17% Similarity=0.131 Sum_probs=119.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q 012337 178 LRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKY 257 (465)
Q Consensus 178 l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~ 257 (465)
+++++.+.+++... +..++|+|+.+++.++ +++|+|++||||||||++|++|+++.+..
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~-~g~dvlv~a~TGSGKT~~~~lpil~~l~~------------------- 213 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALK------------------- 213 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGS-TTCEEEECCCTTSSTTTTHHHHHHHHHHH-------------------
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHh-cCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------------------
Confidence 45566555544432 4788999988887764 79999999999999999999999998853
Q ss_pred CCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 258 APKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 258 ~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
.++++|||+|||+||.|+++.+. ++.+.. .+..-. .....+..|.++|.+.|...+... ..+
T Consensus 214 ---~~~~vLvl~PtreLa~Qi~~~l~------~~~v~~-~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~----~~l 275 (618)
T 2whx_A 214 ---RRLRTLILAPTRVVAAEMEEALR------GLPIRY-QTPAVK----SDHTGREIVDLMCHATFTTRLLSS----TRV 275 (618)
T ss_dssp ---TTCCEEEEESSHHHHHHHHHHTT------TSCEEE-CCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC----SSC
T ss_pred ---CCCeEEEEcChHHHHHHHHHHhc------CCceeE-ecccce----eccCCCceEEEEChHHHHHHHhcc----ccc
Confidence 24689999999999999998876 233331 121100 001123467788888887666432 448
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
+++++|||||||++ ++++...+..|+..++. ..+|+|+||||++..
T Consensus 276 ~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-----------------------~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 276 PNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-----------------------GEAAAIFMTATPPGS 321 (618)
T ss_dssp CCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-----------------------TSCEEEEECSSCTTC
T ss_pred cCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-----------------------cCccEEEEECCCchh
Confidence 89999999999998 67788888888877641 468999999999754
No 63
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.78 E-value=7.9e-19 Score=192.80 Aligned_cols=191 Identities=19% Similarity=0.238 Sum_probs=134.8
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhh
Q 012337 170 TEFDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEE 249 (465)
Q Consensus 170 ~~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~ 249 (465)
.+...|.++++++.+.+.+...+ ..|+++|+.+|+.++..+++++++||||||||+ ++|++ ++...
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~l--l~~~~--------- 134 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQF--VLFDE--------- 134 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHH--HHHHH---------
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHH--HHHhc---------
Confidence 34578999999999999999888 689999999999999888899999999999999 46655 22110
Q ss_pred hhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhC
Q 012337 250 KGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSG 329 (465)
Q Consensus 250 ~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~ 329 (465)
.....+++++|++|+|+||.|++..+.... ++.+...+|+... ........++|+|+|||+|.+.+..
T Consensus 135 -------~~~~~g~~ilvl~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~--~~~~~~~~~~I~v~T~G~l~r~l~~ 202 (773)
T 2xau_A 135 -------MPHLENTQVACTQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIR--FENKTSNKTILKYMTDGMLLREAME 202 (773)
T ss_dssp -------CGGGGTCEEEEEESCHHHHHHHHHHHHHHT---TCCBTTTEEEEET--TEEECCTTCSEEEEEHHHHHHHHHH
T ss_pred -------cccCCCceEEecCchHHHHHHHHHHHHHHh---CCchhheecceec--cccccCCCCCEEEECHHHHHHHHhh
Confidence 011124679999999999999998776543 2222222221100 0001124678999999999987754
Q ss_pred CCccccccCceeEEEecchhH-hhhcCC-HHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 330 GEKHLVELHTLSFFVLDEADR-MIENGH-FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEah~-ll~~~~-~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
. ..+.++.+|||||||. +++..+ ...+..++... ...|+|+||||+. .
T Consensus 203 ~----~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-------------------------~~~~iIl~SAT~~-~ 252 (773)
T 2xau_A 203 D----HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-------------------------PDLKIIIMSATLD-A 252 (773)
T ss_dssp S----TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-------------------------TTCEEEEEESCSC-C
T ss_pred C----ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-------------------------CCceEEEEecccc-H
Confidence 3 4589999999999995 565332 23333443332 3579999999995 6
Q ss_pred HHHHHHhhh
Q 012337 408 ADFRKKLKH 416 (465)
Q Consensus 408 ~~~~~~l~~ 416 (465)
..+..++..
T Consensus 253 ~~l~~~~~~ 261 (773)
T 2xau_A 253 EKFQRYFND 261 (773)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHhcC
Confidence 677777753
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.78 E-value=1e-18 Score=181.96 Aligned_cols=137 Identities=21% Similarity=0.139 Sum_probs=111.5
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+|+|.++++.++ ++.+++++++||+|||++|++++... +.++|||+||++|
T Consensus 93 ~l~~~Q~~ai~~i~-~~~~~ll~~~TGsGKT~~~l~~i~~~--------------------------~~~~Lvl~P~~~L 145 (472)
T 2fwr_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTLAL 145 (472)
T ss_dssp CBCHHHHHHHHHHT-TTTEEEEECCTTSCHHHHHHHHHHHH--------------------------CSCEEEEESSHHH
T ss_pred CcCHHHHHHHHHHH-hcCCEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEECCHHH
Confidence 79999999999886 57889999999999999999987642 2379999999999
Q ss_pred HHHHHHHHHHHHccCCce-EEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhh
Q 012337 275 ALQVTDHLKEVAKGINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~-v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~ 353 (465)
+.|+++.|..+ ++. +..++|+... .++|+|+||+.|...+.. ....+.+|||||||++..
T Consensus 146 ~~Q~~~~~~~~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 146 AEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPA 206 (472)
T ss_dssp HHHHHHHGGGG----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTS
T ss_pred HHHHHHHHHhC----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCC
Confidence 99999999884 677 8888887643 578999999998776531 124689999999999987
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 354 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 354 ~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
.++.. ++..++ ..++|+||||+..
T Consensus 207 ~~~~~----~~~~~~-------------------------~~~~l~lSATp~~ 230 (472)
T 2fwr_A 207 ESYVQ----IAQMSI-------------------------APFRLGLTATFER 230 (472)
T ss_dssp TTTHH----HHHTCC-------------------------CSEEEEEESCCCC
T ss_pred hHHHH----HHHhcC-------------------------CCeEEEEecCccC
Confidence 76543 444443 4689999999973
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.77 E-value=9.6e-20 Score=194.67 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHH
Q 012337 197 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELAL 276 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~ 276 (465)
.++| +.++.++.++++++++||||||||++|.+|+++. +.++||++|||+||.
T Consensus 219 ~~~q-~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------------------g~~vLVl~PTReLA~ 271 (666)
T 3o8b_A 219 FTDN-SSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------------------GYKVLVLNPSVAATL 271 (666)
T ss_dssp CCCC-CSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------------------TCCEEEEESCHHHHH
T ss_pred HHHH-HHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------------------CCeEEEEcchHHHHH
Confidence 3444 4444555678999999999999999999988751 337999999999999
Q ss_pred HHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCC
Q 012337 277 QVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGH 356 (465)
Q Consensus 277 Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~ 356 (465)
|+++.+.+.. +..+...+|+.. +..+++|+|+||++|+ ... .+.++++++|||||||. +++++
T Consensus 272 Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~---~l~l~~l~~lVlDEAH~-l~~~~ 334 (666)
T 3o8b_A 272 GFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADG---GCSGGAYDIIICDECHS-TDSTT 334 (666)
T ss_dssp HHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTT---SCCTTSCSEEEETTTTC-CSHHH
T ss_pred HHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHHH---hCC---CcccCcccEEEEccchh-cCccH
Confidence 9999877654 456666777754 3567899999999983 322 35688899999999974 56888
Q ss_pred HHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 357 FRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 357 ~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
...+..|+..++.. ....+++||||++..
T Consensus 335 ~~~l~~Il~~l~~~----------------------~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 335 ILGIGTVLDQAETA----------------------GARLVVLATATPPGS 363 (666)
T ss_dssp HHHHHHHHHHTTTT----------------------TCSEEEEEESSCTTC
T ss_pred HHHHHHHHHhhhhc----------------------CCceEEEECCCCCcc
Confidence 88899999988721 222378889999863
No 66
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=3.6e-18 Score=161.88 Aligned_cols=137 Identities=21% Similarity=0.130 Sum_probs=107.7
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+++|.+++..++ ++.++++++|||+|||++++.++... +.++||++||++|
T Consensus 93 ~l~~~Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~--------------------------~~~~liv~P~~~L 145 (237)
T 2fz4_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL--------------------------STPTLIVVPTLAL 145 (237)
T ss_dssp CCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS--------------------------CSCEEEEESSHHH
T ss_pred CcCHHHHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc--------------------------CCCEEEEeCCHHH
Confidence 79999999999886 57789999999999999988876532 2369999999999
Q ss_pred HHHHHHHHHHHHccCCce-EEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhh
Q 012337 275 ALQVTDHLKEVAKGINVR-VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~-v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~ 353 (465)
+.|+.+.+..+ ++. +..+.|+.. ...+|+|+||+.|...+. .....+.+|||||||++.+
T Consensus 146 ~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~------~~~~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 146 AEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAE------KLGNRFMLLIFDEVHHLPA 206 (237)
T ss_dssp HHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHH------HHTTTCSEEEEECSSCCCT
T ss_pred HHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHH------HhcccCCEEEEECCccCCC
Confidence 99999998873 677 777777654 257899999999876553 1134689999999999975
Q ss_pred cCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 354 NGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 354 ~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
.++ ..++..++ ..++|+||||+..
T Consensus 207 ~~~----~~i~~~~~-------------------------~~~~l~LSATp~r 230 (237)
T 2fz4_A 207 ESY----VQIAQMSI-------------------------APFRLGLTATFER 230 (237)
T ss_dssp TTH----HHHHHTCC-------------------------CSEEEEEEESCC-
T ss_pred hHH----HHHHHhcc-------------------------CCEEEEEecCCCC
Confidence 543 23455443 4688999999964
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.73 E-value=3.8e-18 Score=177.28 Aligned_cols=137 Identities=19% Similarity=0.240 Sum_probs=97.0
Q ss_pred HHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHH
Q 012337 205 PAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKE 284 (465)
Q Consensus 205 ~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~ 284 (465)
+.++.+++++|+++|||||||++|++|+++.+.. .++++|||+|||+||.|+++.+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----------------------~~~~~lvl~Ptr~La~Q~~~~l~- 71 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----------------------QRLRTAVLAPTRVVAAEMAEALR- 71 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----------------------TTCCEEEEECSHHHHHHHHHHTT-
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----------------------CCCcEEEECchHHHHHHHHHHhc-
Confidence 4556689999999999999999999999998753 24689999999999999999886
Q ss_pred HHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhH-----hhhcCCHHH
Q 012337 285 VAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADR-----MIENGHFRE 359 (465)
Q Consensus 285 l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~-----ll~~~~~~~ 359 (465)
++.+....+..... -..+.-|.++|.+.|...+... ..++++.+|||||||+ ++.+++...
T Consensus 72 -----g~~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~ 137 (459)
T 2z83_A 72 -----GLPVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIAT 137 (459)
T ss_dssp -----TSCEEECC-------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHH
T ss_pred -----CceEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHH
Confidence 33333222221110 1234568889999887766543 4588999999999998 444444322
Q ss_pred HHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 360 LQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 360 l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
+ . . . ..+|+|+||||++..
T Consensus 138 ~---~-~-~------------------------~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 138 K---V-E-L------------------------GEAAAIFMTATPPGT 156 (459)
T ss_dssp H---H-H-T------------------------TSCEEEEECSSCTTC
T ss_pred H---h-c-c------------------------CCccEEEEEcCCCcc
Confidence 1 1 1 1 468999999999854
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.71 E-value=1.4e-18 Score=179.48 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=91.2
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHcc
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKG 288 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~ 288 (465)
.+|+|+|++||||||||++|++|+++.+.. .++++||++|||+||.|+++.+..+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----------------------~~~~~lil~Ptr~La~Q~~~~l~~~--- 60 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECAR----------------------RRLRTLVLAPTRVVLSEMKEAFHGL--- 60 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH----------------------TTCCEEEEESSHHHHHHHHHHTTTS---
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----------------------cCCeEEEEcchHHHHHHHHHHHhcC---
Confidence 479999999999999999999999998753 2468999999999999999988643
Q ss_pred CCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC-----ccccccCceeEEEecchhHhhhcCCHHHHHHH
Q 012337 289 INVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-----KHLVELHTLSFFVLDEADRMIENGHFRELQSI 363 (465)
Q Consensus 289 ~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~-----~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i 363 (465)
.+....+.. -+|+||+++..++..+. .....++++.+|||||||++ +.++...+..+
T Consensus 61 ---~v~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~ 122 (440)
T 1yks_A 61 ---DVKFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWA 122 (440)
T ss_dssp ---CEEEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHH
T ss_pred ---CeEEecccc--------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHH
Confidence 222211111 03777766643332110 01134789999999999998 34443333333
Q ss_pred HHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 364 IDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 364 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
...+. ...+|+|+||||++..
T Consensus 123 ~~~~~-----------------------~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 123 AHRAR-----------------------ANESATILMTATPPGT 143 (440)
T ss_dssp HHHHH-----------------------TTSCEEEEECSSCTTC
T ss_pred HHHhc-----------------------cCCceEEEEeCCCCch
Confidence 33322 0468999999999754
No 69
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.71 E-value=2.1e-17 Score=170.31 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=95.8
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCC
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 290 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~ 290 (465)
|+++|+++|||||||++|++|+++.+.. .++++||++||++||.|+++.+. +
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~----------------------~g~~~lvl~Pt~~La~Q~~~~~~------~ 53 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK----------------------KRLRTVILAPTRVVASEMYEALR------G 53 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH----------------------TTCCEEEEESSHHHHHHHHHHTT------T
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh----------------------CCCCEEEECcHHHHHHHHHHHhC------C
Confidence 7899999999999999999999977642 24589999999999999998775 4
Q ss_pred ceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCC
Q 012337 291 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMT 370 (465)
Q Consensus 291 ~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~ 370 (465)
+.+....|+... .-..+.-+.++|.+.+...+... ..++++.+|||||||++ +.++...+..+.....
T Consensus 54 ~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~-- 121 (431)
T 2v6i_A 54 EPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVS-- 121 (431)
T ss_dssp SCEEEC--------------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH--
T ss_pred CeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhh--
Confidence 455555554221 11234567788999887666432 45889999999999987 3433334444433321
Q ss_pred CCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 371 NGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
...+|+|+||||++..
T Consensus 122 ---------------------~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 122 ---------------------MGDAGAIFMTATPPGT 137 (431)
T ss_dssp ---------------------TTSCEEEEEESSCTTC
T ss_pred ---------------------CCCCcEEEEeCCCCcc
Confidence 1468999999999854
No 70
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.70 E-value=1.8e-17 Score=177.48 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=92.2
Q ss_pred CCcHHHHHHHHHHHh----cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 195 EPTPIQKACIPAAAH----QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~----~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+++|.++++.++. ..++++++++||||||++++. ++..++... ........++++|||+|
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~-------------~~~~~~~~~~~vlil~P 243 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSAR-------------WNRTGDYRKPRILFLAD 243 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTT-------------CCSSCSSSCCCEEEEEC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcc-------------cccccccCCCeEEEEeC
Confidence 799999999998864 346799999999999999654 444443210 00011124678999999
Q ss_pred cHHHHHHHH-HHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC-ccccccCceeEEEecch
Q 012337 271 TRELALQVT-DHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE-KHLVELHTLSFFVLDEA 348 (465)
Q Consensus 271 tr~La~Qv~-~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~-~~~~~l~~i~~lViDEa 348 (465)
|++|+.|+. +.+..+ +..+..+.++. ...+.+|+|+||++|...+.... ...+....+.+||||||
T Consensus 244 ~~~L~~Q~~~~~~~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEa 311 (590)
T 3h1t_A 244 RNVLVDDPKDKTFTPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDEC 311 (590)
T ss_dssp -----------CCTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCC
T ss_pred CHHHHHHHHHHHHHhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECC
Confidence 999999999 777654 33344443332 33568999999999988764221 12234567899999999
Q ss_pred hHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 349 DRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 349 h~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
|++...+ ...+..++..++ ..++|+||||...
T Consensus 312 H~~~~~~-~~~~~~il~~~~-------------------------~~~~l~lTATP~~ 343 (590)
T 3h1t_A 312 HRGSARD-NSNWREILEYFE-------------------------PAFQIGMTATPLR 343 (590)
T ss_dssp C----------CHHHHHHST-------------------------TSEEEEEESSCSC
T ss_pred ccccccc-hHHHHHHHHhCC-------------------------cceEEEecccccc
Confidence 9997432 345667777775 3689999999763
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.70 E-value=3.3e-17 Score=183.84 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=115.7
Q ss_pred CCcHHHHHHHHHHHh-------------cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCC
Q 012337 195 EPTPIQKACIPAAAH-------------QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKG 261 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~-------------~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (465)
.|+|+|..+++.++. .+++++++++||||||+++ ++++..+.. ...
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--------------------~~~ 329 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--------------------LDF 329 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--------------------CTT
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--------------------cCC
Confidence 599999999999874 1468999999999999997 666644310 122
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh-CCCcEEEeChHHHHHHHhCCCccccccCce
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK-ARPELVVGTPGRLWELMSGGEKHLVELHTL 340 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~-~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i 340 (465)
.+++|||+|+++|+.|+.+.+..++.. .+.++.+.......+. .+++|+|+||++|..++.... ....+...
T Consensus 330 ~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~-~~~~~~~~ 402 (1038)
T 2w00_A 330 IDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES-DLPVYNQQ 402 (1038)
T ss_dssp CCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC-CCGGGGSC
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc-chhccccc
Confidence 358999999999999999999887542 2345555555555554 568999999999999886431 11235678
Q ss_pred eEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC
Q 012337 341 SFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL 406 (465)
Q Consensus 341 ~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~ 406 (465)
.+|||||||++... .....|+..++ ..++|+||||...
T Consensus 403 ~lvIiDEAHrs~~~---~~~~~I~~~~p-------------------------~a~~lgfTATP~~ 440 (1038)
T 2w00_A 403 VVFIFDECHRSQFG---EAQKNLKKKFK-------------------------RYYQFGFTGTPIF 440 (1038)
T ss_dssp EEEEEESCCTTHHH---HHHHHHHHHCS-------------------------SEEEEEEESSCCC
T ss_pred cEEEEEccchhcch---HHHHHHHHhCC-------------------------cccEEEEeCCccc
Confidence 89999999998733 23456666664 4799999999864
No 72
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.69 E-value=2.3e-18 Score=185.93 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=103.3
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHH-----hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhh
Q 012337 187 SIYRLGFK-----EPTPIQK-----ACIPAAA-----HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKG 251 (465)
Q Consensus 187 ~l~~~g~~-----~p~~iQ~-----~~i~~~l-----~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~ 251 (465)
+++..||. .||++|+ ++||.++ .+++|+|++||||||||++|++|+++.+..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------------- 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------------- 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------------
Confidence 34556666 8999999 9998765 269999999999999999999999988753
Q ss_pred hhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCC
Q 012337 252 EEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGE 331 (465)
Q Consensus 252 ~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~ 331 (465)
.++++|||+|||+||.|+++.+..+ ++. ...+... .....+.-+-+.+.+.+...+...
T Consensus 269 ---------~~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~- 327 (673)
T 2wv9_A 269 ---------KRLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP- 327 (673)
T ss_dssp ---------TTCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-
T ss_pred ---------CCCcEEEEccHHHHHHHHHHHHhcC----Cee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc-
Confidence 2468999999999999999988744 222 1111100 000011223344444444433321
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccCc
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALS 407 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~ 407 (465)
..++++.+|||||||++ +..+...+..+...++. ..+|+|+||||++..
T Consensus 328 ---~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-----------------------~~~~vl~~SAT~~~~ 376 (673)
T 2wv9_A 328 ---LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-----------------------GEAAAIFMTATPPGT 376 (673)
T ss_dssp ---SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-----------------------TSCEEEEECSSCTTC
T ss_pred ---cccccceEEEEeCCccc-CccHHHHHHHHHHhccc-----------------------cCCcEEEEcCCCChh
Confidence 35889999999999998 22222233333333210 468999999999754
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.64 E-value=7.1e-16 Score=163.74 Aligned_cols=133 Identities=17% Similarity=0.037 Sum_probs=102.0
Q ss_pred CCCCCcHHHHHHHHHH---HhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEE
Q 012337 192 GFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALII 268 (465)
Q Consensus 192 g~~~p~~iQ~~~i~~~---l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil 268 (465)
|| .|+|.|.+++..+ +.+++++++.||||+|||++|++|++.. ++++||+
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------------------~~~v~i~ 53 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------------------KPKVLFV 53 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------------------CSEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------------------CCeEEEE
Confidence 45 6899999876643 4579999999999999999999999871 3589999
Q ss_pred cccHHHHHHHHHHHHHHHccCCceEEEEecCCC---------------------------------HHHHH---------
Q 012337 269 TPTRELALQVTDHLKEVAKGINVRVVPIVGGMS---------------------------------TEKQE--------- 306 (465)
Q Consensus 269 ~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~---------------------------------~~~~~--------- 306 (465)
+||++|+.|+.+.+..+....+++++.+.|+.+ .....
T Consensus 54 ~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~ 133 (551)
T 3crv_A 54 VRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQ 133 (551)
T ss_dssp ESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCc
Confidence 999999999999999887766788887776321 11111
Q ss_pred ---------HHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhh
Q 012337 307 ---------RLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 307 ---------~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~ 353 (465)
+.....++|||+|+..|.+.+.... ........+|||||||.|.+
T Consensus 134 ~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 134 DKFCPYYSLLNSLYKADVIALTYPYFFIDRYREF--IDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG
T ss_pred CCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHh--cCCCcCCeEEEEecccchHH
Confidence 2233468999999999988754322 11224677999999999987
No 74
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.62 E-value=1.1e-16 Score=172.74 Aligned_cols=137 Identities=17% Similarity=0.092 Sum_probs=100.5
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 289 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~ 289 (465)
++++++++||||||||+ +++..+... .++||++|||+||.|+++.+..+
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~~-----------------------~~gl~l~PtR~LA~Qi~~~l~~~---- 202 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFSA-----------------------KSGVYCGPLKLLAHEIFEKSNAA---- 202 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHHS-----------------------SSEEEEESSHHHHHHHHHHHHHT----
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHhc-----------------------CCeEEEeCHHHHHHHHHHHHHhc----
Confidence 68999999999999998 455554321 24699999999999999998875
Q ss_pred CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCC
Q 012337 290 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 369 (465)
Q Consensus 290 ~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~ 369 (465)
++.+..++|+..... .......+++++|++.+ ..+..+++|||||||+|++.++...+..++..++.
T Consensus 203 g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~ 269 (677)
T 3rc3_A 203 GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA 269 (677)
T ss_dssp TCCEEEECSSCEECC--STTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE
T ss_pred CCcEEEEECCeeEEe--cCCCcccceeEecHhHh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccCc
Confidence 778888888854300 00001245666666432 22567899999999999999999999999888762
Q ss_pred CCCCCCCCcccccchhccccccCCCceEEEEeeeccCcHHHHHH
Q 012337 370 TNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIALSADFRKK 413 (465)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~~~~~~~~ 413 (465)
..+|++++|||.+....+..+
T Consensus 270 -----------------------~~i~il~~SAT~~~i~~l~~~ 290 (677)
T 3rc3_A 270 -----------------------EEVHLCGEPAAIDLVMELMYT 290 (677)
T ss_dssp -----------------------EEEEEEECGGGHHHHHHHHHH
T ss_pred -----------------------cceEEEeccchHHHHHHHHHh
Confidence 468999999997544444443
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.52 E-value=2.8e-14 Score=149.39 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=106.1
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l---~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.|+|+|.+++..++ ..+.++|++.+||+|||++++..+. .+... ....++|||+|+
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~--------------------~~~~~~LIv~P~ 95 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKE--------------------NELTPSLVICPL 95 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHT--------------------TCCSSEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhc--------------------CCCCCEEEEccH
Confidence 79999999997663 3578999999999999999755443 33211 123469999995
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHh
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~l 351 (465)
.|+.|+.+++.+++. ++++..++|+... ......+|+|+||+.|..... +....+.+|||||||++
T Consensus 96 -~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~ 161 (500)
T 1z63_A 96 -SVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNI 161 (500)
T ss_dssp -TTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGG
T ss_pred -HHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCcccc
Confidence 588999999998864 4667666666532 122457999999999865331 33457889999999999
Q ss_pred hhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeecc
Q 012337 352 IENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIA 405 (465)
Q Consensus 352 l~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~ 405 (465)
...+. .+...+..++ ..+.+++|||..
T Consensus 162 kn~~~--~~~~~l~~l~-------------------------~~~~l~LTaTP~ 188 (500)
T 1z63_A 162 KNPQT--KIFKAVKELK-------------------------SKYRIALTGTPI 188 (500)
T ss_dssp SCTTS--HHHHHHHTSC-------------------------EEEEEEECSSCS
T ss_pred CCHhH--HHHHHHHhhc-------------------------cCcEEEEecCCC
Confidence 75432 3344444443 356799999984
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.52 E-value=1.5e-14 Score=153.15 Aligned_cols=132 Identities=21% Similarity=0.184 Sum_probs=87.2
Q ss_pred CCCCCCcHHHHHHHHHH---HhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012337 191 LGFKEPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 267 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~---l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 267 (465)
.|| .|+|+|.+++..+ +.+++++++.+|||+|||++|++|++.. ++++||
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------------------~~~~~~ 56 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------------------KKKVLI 56 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------------------TCEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------------------CCcEEE
Confidence 467 8999999976543 3578999999999999999999998642 248999
Q ss_pred EcccHHHHHHHHHHHHHHHccCCceEEEEecCCCH--------H------------------------HH----------
Q 012337 268 ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMST--------E------------------------KQ---------- 305 (465)
Q Consensus 268 l~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~--------~------------------------~~---------- 305 (465)
++||++|+.|+.+.+..+ ++++..+.|.... . ..
T Consensus 57 ~~~t~~l~~q~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~ 132 (540)
T 2vl7_A 57 FTRTHSQLDSIYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDY 132 (540)
T ss_dssp EESCHHHHHHHHHHHGGG----TCCEEEC---------------------------------------------------
T ss_pred EcCCHHHHHHHHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCC
Confidence 999999999999888764 4455444432210 0 00
Q ss_pred -----HHHHhCCCcEEEeChHHHHHHHhCCCcc----ccccCceeEEEecchhHhhh
Q 012337 306 -----ERLLKARPELVVGTPGRLWELMSGGEKH----LVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 306 -----~~~~~~~~dIiV~TP~~L~~~l~~~~~~----~~~l~~i~~lViDEah~ll~ 353 (465)
.+.....++|||||+..|.+.+...... ...+....+|||||||.|.+
T Consensus 133 Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 133 CPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp ------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred ChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 0011235799999999998744321100 00245678999999999953
No 77
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.41 E-value=1.9e-12 Score=139.81 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=95.4
Q ss_pred CCcHHHHHHHHHHH--------hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEE
Q 012337 195 EPTPIQKACIPAAA--------HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRAL 266 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l--------~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 266 (465)
.|.|+|.+++..++ .++...|++.+||.|||++++..+...+... ........++|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~----------------~~~~p~~~~~L 118 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQS----------------PDCKPEIDKVI 118 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCC----------------TTSSCSCSCEE
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhC----------------ccccCCCCcEE
Confidence 68999999998764 3466799999999999999877665543210 00111223699
Q ss_pred EEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHH--HH-Hh-----CCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 267 IITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQE--RL-LK-----ARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 267 il~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~--~~-~~-----~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
||+|+ .|+.|+.+++.+++.. .+.++.++||....... .. +. ...+|+|+|++.|...... +...
T Consensus 119 iV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-----l~~~ 191 (644)
T 1z3i_X 119 VVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-----LHKG 191 (644)
T ss_dssp EEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-----TTTS
T ss_pred EEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH-----hhcC
Confidence 99997 8999999999998754 56677777775432211 11 11 1478999999998765421 2335
Q ss_pred ceeEEEecchhHhhh
Q 012337 339 TLSFFVLDEADRMIE 353 (465)
Q Consensus 339 ~i~~lViDEah~ll~ 353 (465)
.+.+|||||||++-.
T Consensus 192 ~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 192 KVGLVICDEGHRLKN 206 (644)
T ss_dssp CCCEEEETTGGGCCT
T ss_pred CccEEEEECceecCC
Confidence 678999999999863
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.40 E-value=2.7e-13 Score=152.61 Aligned_cols=133 Identities=22% Similarity=0.195 Sum_probs=92.5
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 195 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
.|+|+|..++..++.. +.++|++++||+|||++++..+...+.. +...++|||||+ .
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------------------g~~~rvLIVvP~-s 210 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------------------GAAERVLIIVPE-T 210 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT---------------------SSCCCEEEECCT-T
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh---------------------CCCCeEEEEeCH-H
Confidence 7999999999888743 4578999999999999988777665521 112369999999 9
Q ss_pred HHHHHHHHHHHHHccCCceEEEEecCCCHHHHHH--HHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHh
Q 012337 274 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER--LLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351 (465)
Q Consensus 274 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~--~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~l 351 (465)
|+.|+..++...+ ++.+..+.|+........ ......+|+|+|+..|..... ....+....+.+|||||||++
T Consensus 211 Ll~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~--~~~~l~~~~~dlVIvDEAH~~ 285 (968)
T 3dmq_A 211 LQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQ--RLEHLCEAEWDLLVVDEAHHL 285 (968)
T ss_dssp THHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTT--TTHHHHTSCCCEEEECCSSCC
T ss_pred HHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHH--HHHHhhhcCCCEEEehhhHhh
Confidence 9999999997764 566665554432211100 111256999999988753211 111233567899999999998
Q ss_pred hhc
Q 012337 352 IEN 354 (465)
Q Consensus 352 l~~ 354 (465)
...
T Consensus 286 kn~ 288 (968)
T 3dmq_A 286 VWS 288 (968)
T ss_dssp CCB
T ss_pred cCC
Confidence 643
No 79
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.38 E-value=1.8e-12 Score=139.07 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=68.2
Q ss_pred CCcHHHHHHHHHH---HhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAA---AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~---l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.|+|.|.+.+..+ +.+|+++++.||||+|||++|++|++.++... ++++||++||
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------------------~~kvli~t~T 60 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------------------KLKVLYLVRT 60 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------------------TCEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------------------CCeEEEECCC
Confidence 6899998887533 45799999999999999999999999987432 3589999999
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecC
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGG 299 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg 299 (465)
++|+.|+.+.+..+....+++++.+.|+
T Consensus 61 ~~l~~Qi~~el~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 61 NSQEEQVIKELRSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCEEECCCH
T ss_pred HHHHHHHHHHHHHHhhccCeEEEEEECC
Confidence 9999999999999887667777666554
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.35 E-value=3.7e-12 Score=140.84 Aligned_cols=131 Identities=19% Similarity=0.177 Sum_probs=94.7
Q ss_pred CCcHHHHHHHHHHH---hcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEccc
Q 012337 195 EPTPIQKACIPAAA---HQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPT 271 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l---~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Pt 271 (465)
.|+|+|.+++..++ .++.+.|++.+||.|||++++..+...+... .....+|||||
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~--------------------~~~~~~LIV~P- 294 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR--------------------RQNGPHIIVVP- 294 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--------------------SCCSCEEEECC-
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--------------------CCCCCEEEEEC-
Confidence 68999999997654 3688999999999999999766655444221 11235899999
Q ss_pred HHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH------------hCCCcEEEeChHHHHHHHhCCCccccccCc
Q 012337 272 RELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL------------KARPELVVGTPGRLWELMSGGEKHLVELHT 339 (465)
Q Consensus 272 r~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~------------~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 339 (465)
..|+.|+.++|.+++. ++.+.+++|+.......... ...++|+|+|++.+..... .+....
T Consensus 295 ~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~-----~l~~~~ 367 (800)
T 3mwy_W 295 LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA-----ELGSIK 367 (800)
T ss_dssp TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH-----HHHTSE
T ss_pred chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH-----HHhcCC
Confidence 6788999999998863 56777777766543332221 2357899999999876432 122346
Q ss_pred eeEEEecchhHhhh
Q 012337 340 LSFFVLDEADRMIE 353 (465)
Q Consensus 340 i~~lViDEah~ll~ 353 (465)
+.+|||||||++-.
T Consensus 368 w~~vIvDEaH~lkn 381 (800)
T 3mwy_W 368 WQFMAVDEAHRLKN 381 (800)
T ss_dssp EEEEEETTGGGGCC
T ss_pred cceeehhhhhhhcC
Confidence 78999999999853
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.21 E-value=1.2e-10 Score=123.84 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=101.1
Q ss_pred CCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 191 LGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 191 ~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
+|+ .|+++|......+ ++|+ |+...||+|||+++.+|++-+.+ .+..|.||+|
T Consensus 72 lg~-r~~dvQligg~~L-~~G~--iaEM~TGEGKTLva~lp~~lnAL-----------------------~G~~vhVvT~ 124 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIAL-HEGK--VAEMKTGEGKTLAATMPIYLNAL-----------------------IGKGVHLVTV 124 (822)
T ss_dssp TSC-CCCHHHHHHHHHH-HTTC--EEECCTTSCHHHHTHHHHHHHHT-----------------------TSSCEEEEES
T ss_pred hCC-CCcHHHHHHHHHH-hCCC--hhhccCCCCccHHHHHHHHHHHh-----------------------cCCceEEEec
Confidence 677 7999999988655 6777 88999999999999999874432 2457999999
Q ss_pred cHHHHHHHHHHHHHHHccCCceEEEEecC--------------------------------------------------C
Q 012337 271 TRELALQVTDHLKEVAKGINVRVVPIVGG--------------------------------------------------M 300 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~~~~~~v~~~~gg--------------------------------------------------~ 300 (465)
|+.||.|-++.+..+...+|+.|++++.. .
T Consensus 125 ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 204 (822)
T 3jux_A 125 NDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVEL 204 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEEC
T ss_pred cHHHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccC
Confidence 99999999999999999999999999872 2
Q ss_pred CHHHHHHHHhCCCcEEEeChHHH-HHHHhCCC---ccccccCceeEEEecchhHhh
Q 012337 301 STEKQERLLKARPELVVGTPGRL-WELMSGGE---KHLVELHTLSFFVLDEADRMI 352 (465)
Q Consensus 301 ~~~~~~~~~~~~~dIiV~TP~~L-~~~l~~~~---~~~~~l~~i~~lViDEah~ll 352 (465)
+........ .|||..+|..-| .+.|...- ......+.+.+.||||+|.||
T Consensus 205 ~~~err~aY--~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 205 KEITRKEAY--LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp CBCCHHHHH--HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred CHHHHHHHh--cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 222222222 379999999886 34443211 111235778999999999876
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.87 E-value=3e-09 Score=113.82 Aligned_cols=134 Identities=22% Similarity=0.279 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHhcCCcEEEEcCCCCChh--HHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 197 TPIQKACIPAAAHQGKDIIGAAETGSGKT--LAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT--~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
++.|+.+++.++ .++.+++.|++|+||| ++++++++..+. ...++++++++||+.+
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~---------------------~~~~~~vll~APTg~A 208 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMA---------------------DGERCRIRLAAPTGKA 208 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTC---------------------SSCCCCEEEEBSSHHH
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhh---------------------hcCCCeEEEEeCChhH
Confidence 789999999987 6899999999999999 556777665431 1235689999999999
Q ss_pred HHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCc-EEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhh
Q 012337 275 ALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPE-LVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~d-IiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~ 353 (465)
|.++.+.+...+..+++..... .+... . ....+ ++-.+|+.. . +.... .....+++||||||+ |++
T Consensus 209 A~~L~e~~~~~~~~l~l~~~~~-~~~~~--~----~~Tih~ll~~~~~~~-~-~~~~~---~~~l~~d~lIIDEAs-ml~ 275 (608)
T 1w36_D 209 AARLTESLGKALRQLPLTDEQK-KRIPE--D----ASTLHRLLGAQPGSQ-R-LRHHA---GNPLHLDVLVVDEAS-MID 275 (608)
T ss_dssp HHHHHHHHTHHHHHSSCCSCCC-CSCSC--C----CBTTTSCC-------------CT---TSCCSCSEEEECSGG-GCB
T ss_pred HHHHHHHHHHHHhcCCCCHHHH-hccch--h----hhhhHhhhccCCCch-H-HHhcc---CCCCCCCEEEEechh-hCC
Confidence 9999998877665444321110 00000 0 00011 222223221 1 11111 112278899999999 654
Q ss_pred cCCHHHHHHHHHhCC
Q 012337 354 NGHFRELQSIIDMLP 368 (465)
Q Consensus 354 ~~~~~~l~~i~~~l~ 368 (465)
...+..|+..++
T Consensus 276 ---~~~~~~Ll~~l~ 287 (608)
T 1w36_D 276 ---LPMMSRLIDALP 287 (608)
T ss_dssp ---HHHHHHHHHTCC
T ss_pred ---HHHHHHHHHhCC
Confidence 456778888876
No 83
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.99 E-value=1.6e-05 Score=85.66 Aligned_cols=68 Identities=21% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.+.+-|.+|+..++.+..=.|++||.|||||.+.+- ++.++++ .+.++|+++||...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~----------------------~~~~ILv~a~TN~A 245 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVK----------------------QGLKVLCCAPSNIA 245 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHH----------------------TTCCEEEEESSHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHh----------------------CCCeEEEEcCchHH
Confidence 578999999998875344579999999999987433 3333332 13479999999999
Q ss_pred HHHHHHHHHHH
Q 012337 275 ALQVTDHLKEV 285 (465)
Q Consensus 275 a~Qv~~~l~~l 285 (465)
+.++...+...
T Consensus 246 vD~i~erL~~~ 256 (646)
T 4b3f_X 246 VDNLVERLALC 256 (646)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999888654
No 84
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.97 E-value=5.1e-05 Score=81.31 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=53.6
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 193 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
+..+++.|..++..++ ...-+++.||+|+|||.+.. .++.++.. ..+.++|+++||.
T Consensus 178 ~~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~-~~i~~l~~---------------------~~~~~ilv~a~tn 234 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSA-TIVYHLAR---------------------QGNGPVLVCAPSN 234 (624)
T ss_dssp SCCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHH-HHHHHHHT---------------------SSSCCEEEEESSH
T ss_pred cCCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHH-HHHHHHHH---------------------cCCCeEEEEeCcH
Confidence 4578999999998887 46678999999999997643 33444421 1245799999999
Q ss_pred HHHHHHHHHHHHH
Q 012337 273 ELALQVTDHLKEV 285 (465)
Q Consensus 273 ~La~Qv~~~l~~l 285 (465)
..+.++...+...
T Consensus 235 ~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 235 IAVDQLTEKIHQT 247 (624)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887654
No 85
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.94 E-value=5.3e-05 Score=78.11 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=50.9
Q ss_pred HHCCCCCCcHHHHHHHHHHHhc----CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeE
Q 012337 189 YRLGFKEPTPIQKACIPAAAHQ----GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLR 264 (465)
Q Consensus 189 ~~~g~~~p~~iQ~~~i~~~l~~----~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (465)
.-+.|..|++-|.+++..++.. ...+++.|+.|||||.+. ..++..+... +...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---------------------~~~~ 76 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---------------------GETG 76 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---------------------TCCC
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---------------------CCce
Confidence 3456889999999999876532 348999999999999643 4455554321 1136
Q ss_pred EEEEcccHHHHHHHHHHH
Q 012337 265 ALIITPTRELALQVTDHL 282 (465)
Q Consensus 265 vLil~Ptr~La~Qv~~~l 282 (465)
+++++||...|..+...+
T Consensus 77 il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 77 IILAAPTHAAKKILSKLS 94 (459)
T ss_dssp EEEEESSHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHhhh
Confidence 999999999887766554
No 86
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.0001 Score=81.00 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=53.9
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 193 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
+..+++.|..++..++ .+.-+++.||.|||||.+.. .++.++.... +.++|+++||.
T Consensus 358 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~-~~i~~l~~~~---------------------~~~ILv~a~tn 414 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSA-TIVYHLSKIH---------------------KDRILVCAPSN 414 (802)
T ss_dssp SCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHH-HHHHHHHHHH---------------------CCCEEEEESSH
T ss_pred cccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHH-HHHHHHHhCC---------------------CCeEEEEcCcH
Confidence 3468899999998886 46678999999999997643 3444443221 34799999999
Q ss_pred HHHHHHHHHHHHH
Q 012337 273 ELALQVTDHLKEV 285 (465)
Q Consensus 273 ~La~Qv~~~l~~l 285 (465)
..|.++...+...
T Consensus 415 ~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 415 VAVDHLAAKLRDL 427 (802)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 87
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.85 E-value=0.00011 Score=80.65 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=53.2
Q ss_pred CCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccH
Q 012337 193 FKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTR 272 (465)
Q Consensus 193 ~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr 272 (465)
...+++.|..++..++ .+.-+++.||.|+|||.+.. .++.++... .+.++|+++||.
T Consensus 354 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---------------------~~~~ilv~a~tn 410 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---------------------GNGPVLVCAPSN 410 (800)
T ss_dssp SCCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHH-HHHHHHHTT---------------------CSSCEEEEESSH
T ss_pred ccCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---------------------CCCcEEEEcCcH
Confidence 3467999999998887 46678999999999997643 344444310 234799999999
Q ss_pred HHHHHHHHHHHHH
Q 012337 273 ELALQVTDHLKEV 285 (465)
Q Consensus 273 ~La~Qv~~~l~~l 285 (465)
..|.++.+.+...
T Consensus 411 ~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 411 IAVDQLTEKIHQT 423 (800)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887653
No 88
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.78 E-value=7e-05 Score=79.31 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=48.3
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.+++.|..++..++ ....+++.|+.|+|||.+. ..++..+.. .+.++++++||...
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----------------------~g~~Vl~~ApT~~A 244 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTT-KAVADLAES----------------------LGLEVGLCAPTGKA 244 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHH-HHHHHHHHH----------------------TTCCEEEEESSHHH
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHH-HHHHHHHHh----------------------cCCeEEEecCcHHH
Confidence 68999999998886 6789999999999999763 223333321 13479999999999
Q ss_pred HHHHHHHH
Q 012337 275 ALQVTDHL 282 (465)
Q Consensus 275 a~Qv~~~l 282 (465)
+.++.+.+
T Consensus 245 a~~L~e~~ 252 (574)
T 3e1s_A 245 ARRLGEVT 252 (574)
T ss_dssp HHHHHHHH
T ss_pred HHHhHhhh
Confidence 88776543
No 89
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.03 E-value=0.0077 Score=60.25 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=55.4
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+|+|...+..+. ..+-+++..+-+.|||.+....++..+.. ..+..+++++||+..
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---------------------~~g~~v~~vA~t~~q 220 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGSM 220 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHHHHHHHS---------------------SSSCEEEEEESSHHH
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHHHHHHHh---------------------CCCCeEEEEeCCHHH
Confidence 78999999987653 45668889999999998876655544321 234579999999999
Q ss_pred HHHHHHHHHHHHcc
Q 012337 275 ALQVTDHLKEVAKG 288 (465)
Q Consensus 275 a~Qv~~~l~~l~~~ 288 (465)
|..+.+.+..+...
T Consensus 221 A~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 221 SAEVLDRTKQAIEL 234 (385)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99888888877653
No 90
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.74 E-value=0.0061 Score=65.59 Aligned_cols=69 Identities=28% Similarity=0.433 Sum_probs=51.8
Q ss_pred CCCCCcHHHHHHHHHHH---hcCC-cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE
Q 012337 192 GFKEPTPIQKACIPAAA---HQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI 267 (465)
Q Consensus 192 g~~~p~~iQ~~~i~~~l---~~~~-dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi 267 (465)
+| .|++.|..+|..++ ..|. ..++.+.||||||+++.-. +..+ .+ .+||
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~-~~~~------------------------~~-~~lv 58 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKV-IEAL------------------------GR-PALV 58 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH-HHHH------------------------TC-CEEE
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHH-HHHh------------------------CC-CEEE
Confidence 56 89999998887654 2343 4678899999999876432 2222 12 3999
Q ss_pred EcccHHHHHHHHHHHHHHHc
Q 012337 268 ITPTRELALQVTDHLKEVAK 287 (465)
Q Consensus 268 l~Ptr~La~Qv~~~l~~l~~ 287 (465)
|+|+..+|.|++..|..++.
T Consensus 59 v~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 59 LAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp EESSHHHHHHHHHHHHHHCT
T ss_pred EecCHHHHHHHHHHHHHHCC
Confidence 99999999999999999863
No 91
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.72 E-value=0.0033 Score=67.21 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=56.8
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 194 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
..+++-|.+++. .....++|.|+.|||||.+.+--+...+ .. .+..+-++|+|++|+.
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~-~~------------------~~~~~~~iL~ltft~~ 65 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLM-SV------------------ENCSPYSIMAVTFTNK 65 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHH-HT------------------SCCCGGGEEEEESSHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHH-Hh------------------CCCChhhEEEEeccHH
Confidence 368999999995 2466799999999999977444333333 11 1122347999999999
Q ss_pred HHHHHHHHHHHHHcc--CCceEEEE
Q 012337 274 LALQVTDHLKEVAKG--INVRVVPI 296 (465)
Q Consensus 274 La~Qv~~~l~~l~~~--~~~~v~~~ 296 (465)
++.++.+.+..+... .++.+..+
T Consensus 66 aa~e~~~rl~~~~~~~~~~~~v~Tf 90 (647)
T 3lfu_A 66 AAAEMRHRIGQLMGTSQGGMWVGTF 90 (647)
T ss_dssp HHHHHHHHHHHHHCSCCTTCEEEEH
T ss_pred HHHHHHHHHHHHhccccCCcEEEcH
Confidence 999999999887542 23444443
No 92
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.67 E-value=0.014 Score=61.83 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=56.7
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.|+|+|...+..+ ...+-+++..+-|+|||.+....++..+.. ..+..+++++||+..
T Consensus 163 ~l~p~Q~~i~~~l-~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~---------------------~~~~~i~~va~t~~q 220 (592)
T 3cpe_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------------------NKDKAVGILAHKGSM 220 (592)
T ss_dssp CCCHHHHHHHHHH-HHCSEEEEEECSSSCHHHHHHHHHHHHHHT---------------------SSSCEEEEEESSHHH
T ss_pred cCCHHHHHHHHhh-ccccEEEEEEcCccChHHHHHHHHHHHHHh---------------------CCCCeEEEEECCHHH
Confidence 6899999998765 456778999999999999866555544421 124579999999999
Q ss_pred HHHHHHHHHHHHccC
Q 012337 275 ALQVTDHLKEVAKGI 289 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~ 289 (465)
|..+...+..+....
T Consensus 221 A~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 221 SAEVLDRTKQAIELL 235 (592)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 999998888877654
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.61 E-value=0.008 Score=52.99 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=22.5
Q ss_pred cHHHHHHHHHHH--------hcCCcEEEEcCCCCChhHHh
Q 012337 197 TPIQKACIPAAA--------HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 197 ~~iQ~~~i~~~l--------~~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.|..++..+. ..|..+++.||+|+|||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 445555554432 24788999999999999654
No 94
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.24 E-value=0.0095 Score=64.14 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=57.3
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+... +....++|+|+.|+..
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~-------------------~~~~~~IL~lTfT~~A 59 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGC-------------------GYQARHIAAVTFTNKA 59 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHH-------------------CCCGGGEEEEESSHHH
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhc-------------------CCCHHHeEEEeccHHH
Confidence 478999999853 367899999999999987544444333211 1123479999999999
Q ss_pred HHHHHHHHHHHHccC---CceEEEEe
Q 012337 275 ALQVTDHLKEVAKGI---NVRVVPIV 297 (465)
Q Consensus 275 a~Qv~~~l~~l~~~~---~~~v~~~~ 297 (465)
|.++.+.+..+.... ++.|..++
T Consensus 60 a~em~~Rl~~~l~~~~~~~~~v~Tfh 85 (673)
T 1uaa_A 60 AREMKERVGQTLGRKEARGLMISTFH 85 (673)
T ss_dssp HHHHHHHHHHHSCTTTTTTSEEEEHH
T ss_pred HHHHHHHHHHHcCcccccCCEEEeHH
Confidence 999999998875422 35555444
No 95
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.03 E-value=0.016 Score=62.90 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=57.2
Q ss_pred CCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 194 KEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 194 ~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
..+++-|.+++.. ....++|.|..|||||.+..--+...+. . .+....++|+|+.|+.
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~-~------------------~~~~p~~IL~vTFTnk 67 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMA-E------------------KHVAPWNILAITFTNK 67 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHH-T------------------TCCCGGGEEEEESSHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHH-h------------------cCCCHHHeEEEeccHH
Confidence 3689999999853 3568999999999999875444433331 1 1123347999999999
Q ss_pred HHHHHHHHHHHHHcc--CCceEEEEe
Q 012337 274 LALQVTDHLKEVAKG--INVRVVPIV 297 (465)
Q Consensus 274 La~Qv~~~l~~l~~~--~~~~v~~~~ 297 (465)
.|.++.+.+..+... .++.+..++
T Consensus 68 AA~Em~~Rl~~~l~~~~~~~~v~Tfh 93 (724)
T 1pjr_A 68 AAREMRERVQSLLGGAAEDVWISTFH 93 (724)
T ss_dssp HHHHHHHHHHHHHGGGGTTSEEEEHH
T ss_pred HHHHHHHHHHHHhcccccCcEEeeHH
Confidence 999999998887532 234554443
No 96
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.62 E-value=0.0079 Score=61.07 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=53.6
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCCce
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGINVR 292 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~ 292 (465)
-.++.|+.|+|||....- .+ . .-+.+|++||++++..+.+.+... +..
T Consensus 163 v~~I~G~aGsGKTt~I~~----~~-~-----------------------~~~~lVlTpT~~aa~~l~~kl~~~----~~~ 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS----RV-N-----------------------FEEDLILVPGRQAAEMIRRRANAS----GII 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHH----HC-C-----------------------TTTCEEEESCHHHHHHHHHHHTTT----SCC
T ss_pred EEEEEcCCCCCHHHHHHH----Hh-c-----------------------cCCeEEEeCCHHHHHHHHHHhhhc----Ccc
Confidence 468899999999976321 11 0 014799999999998888776432 100
Q ss_pred EEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHH
Q 012337 293 VVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRE 359 (465)
Q Consensus 293 v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~ 359 (465)
....+-|.|-..++. .... ......++||||||- |++.+.+..
T Consensus 211 ------------------~~~~~~V~T~dsfL~--~~~~---~~~~~~d~liiDE~s-m~~~~~l~~ 253 (446)
T 3vkw_A 211 ------------------VATKDNVRTVDSFLM--NYGK---GARCQFKRLFIDEGL-MLHTGCVNF 253 (446)
T ss_dssp ------------------CCCTTTEEEHHHHHH--TTTS---SCCCCCSEEEEETGG-GSCHHHHHH
T ss_pred ------------------ccccceEEEeHHhhc--CCCC---CCCCcCCEEEEeCcc-cCCHHHHHH
Confidence 011234567665432 2111 112247899999997 444444433
No 97
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.091 Score=51.00 Aligned_cols=19 Identities=21% Similarity=-0.034 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.++++.||+|+|||.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999764
No 98
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.50 E-value=0.2 Score=47.04 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..+++.||+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47999999999999764
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.35 E-value=0.012 Score=54.32 Aligned_cols=91 Identities=11% Similarity=0.137 Sum_probs=51.5
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 289 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~ 289 (465)
.|.-+++.|++|+|||.+.+--+.+... .+.+++++.|...- + . ...++...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~-----------------------~g~kVli~~~~~d~--r-~--~~~i~srl 62 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY-----------------------ADVKYLVFKPKIDT--R-S--IRNIQSRT 62 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH-----------------------TTCCEEEEEECCCG--G-G--CSSCCCCC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh-----------------------cCCEEEEEEeccCc--h-H--HHHHHHhc
Confidence 4566888999999999775443333221 13368888775521 0 0 00111112
Q ss_pred CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHh
Q 012337 290 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRM 351 (465)
Q Consensus 290 ~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~l 351 (465)
++.. ..+-+.+...++..+... ..-..+.+||||||+.+
T Consensus 63 G~~~-------------------~~~~~~~~~~i~~~i~~~----~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 63 GTSL-------------------PSVEVESAPEILNYIMSN----SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp CCSS-------------------CCEEESSTHHHHHHHHST----TSCTTCCEEEECSGGGS
T ss_pred CCCc-------------------cccccCCHHHHHHHHHHH----hhCCCCCEEEEecCccC
Confidence 2111 134456777777777542 11235789999999965
No 100
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.30 E-value=0.16 Score=51.63 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+..+++.||+|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999654
No 101
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.24 E-value=0.015 Score=50.00 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+..+++.||+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999653
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.22 E-value=0.053 Score=48.20 Aligned_cols=20 Identities=30% Similarity=0.144 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHhhH
Q 012337 211 GKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~l 230 (465)
|.-+++.|+.|+|||...+-
T Consensus 3 g~i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS 22 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHH
Confidence 56678999999999977543
No 103
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.19 E-value=0.057 Score=57.98 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHHH---hcCC-cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcc
Q 012337 195 EPTPIQKACIPAAA---HQGK-DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITP 270 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l---~~~~-dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~P 270 (465)
.|+..|..+|..++ ..|. ..++.+.||||||++..- ++..+ .+ .+|||+|
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~------------------------~~-~~lvv~~ 65 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV------------------------NK-PTLVIAH 65 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH------------------------CC-CEEEECS
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh------------------------CC-CEEEEEC
Confidence 78888988876543 2343 467889999999977542 22221 12 3999999
Q ss_pred cHHHHHHHHHHHHHHHc
Q 012337 271 TRELALQVTDHLKEVAK 287 (465)
Q Consensus 271 tr~La~Qv~~~l~~l~~ 287 (465)
+..+|.|++..|..++.
T Consensus 66 ~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 66 NKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp SHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHcC
Confidence 99999999999999853
No 104
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.17 E-value=0.044 Score=63.16 Aligned_cols=72 Identities=29% Similarity=0.311 Sum_probs=54.1
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTREL 274 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~L 274 (465)
.+|+-|.++|.. .+.+++|.|..|||||.+.+-=++..+... ..+...-++|+|++|+..
T Consensus 10 ~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~-----------------~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 10 TWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAE-----------------ENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCS-----------------SSCCCGGGEEEECSSHHH
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----------------CCCCCccceEEEeccHHH
Confidence 689999999843 478999999999999988655555554311 011233479999999999
Q ss_pred HHHHHHHHHHHH
Q 012337 275 ALQVTDHLKEVA 286 (465)
Q Consensus 275 a~Qv~~~l~~l~ 286 (465)
|..+.+.+....
T Consensus 70 a~e~~~ri~~~l 81 (1232)
T 3u4q_A 70 AAEMKHRIAEAL 81 (1232)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887753
No 105
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.17 E-value=0.051 Score=49.50 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3678999999999999654
No 106
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.19 Score=44.67 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..+++.||+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999653
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.07 E-value=0.023 Score=51.07 Aligned_cols=22 Identities=18% Similarity=-0.029 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCChhHHhhHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lp 231 (465)
.|+=.++.|++|||||.+.+--
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~ 28 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRR 28 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3556788999999999775433
No 108
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.03 E-value=0.12 Score=46.15 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=54.6
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
+++||.++|+..|..++..|... ++.+..++|+.+...+...+ .+...|+|||. .+..| +++.
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~G----ldi~ 121 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASKG----LDFP 121 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHTT----CCCC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhcC----CCcc
Confidence 47999999999999999988775 78899999999876554433 24689999993 34444 6788
Q ss_pred ceeEEEe
Q 012337 339 TLSFFVL 345 (465)
Q Consensus 339 ~i~~lVi 345 (465)
.+.+||.
T Consensus 122 ~v~~VI~ 128 (191)
T 2p6n_A 122 AIQHVIN 128 (191)
T ss_dssp CCSEEEE
T ss_pred cCCEEEE
Confidence 8888876
No 109
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.96 E-value=0.074 Score=51.44 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+..++++||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999653
No 110
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=94.81 E-value=0.093 Score=45.30 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=54.4
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
.++||.++|+..|..++..|... ++.+..++|+.+.......+ .+...|||||. .+..| +++.
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----ld~~ 102 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARG----IDIE 102 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTT----CCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----Cchh
Confidence 37999999999999999888765 78899999999876554433 24678999994 33333 6788
Q ss_pred ceeEEEec
Q 012337 339 TLSFFVLD 346 (465)
Q Consensus 339 ~i~~lViD 346 (465)
.+.+||.-
T Consensus 103 ~~~~Vi~~ 110 (163)
T 2hjv_A 103 NISLVINY 110 (163)
T ss_dssp CCSEEEES
T ss_pred cCCEEEEe
Confidence 88888764
No 111
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.77 E-value=0.18 Score=49.43 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=19.7
Q ss_pred ceeEEEecchhHhhhcC-CHHHHHHHHHhC
Q 012337 339 TLSFFVLDEADRMIENG-HFRELQSIIDML 367 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~-~~~~l~~i~~~l 367 (465)
.-.+|||||+|.+.... ....+..++..+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 35589999999997542 345566666554
No 112
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.69 E-value=0.35 Score=48.06 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+|+.||+|+|||+..
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999654
No 113
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.47 E-value=0.32 Score=43.68 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.9
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999653
No 114
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.42 E-value=0.096 Score=45.77 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=54.5
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++++..|..++..|... ++.+..++|+.+...+...+ .+...|+|||. .+..| +++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----id~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG----IDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT----TCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC----CCc
Confidence 448999999999999998888654 78899999999876654433 24679999994 23333 778
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
..+.+||.
T Consensus 101 ~~~~~Vi~ 108 (175)
T 2rb4_A 101 KQVTIVVN 108 (175)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 88988885
No 115
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.33 E-value=0.13 Score=44.53 Aligned_cols=72 Identities=17% Similarity=0.369 Sum_probs=54.3
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++|+..|..++..|... ++.+..++|+.+...+...+ .+...|+|||. .+..| +++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----~d~ 96 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDV 96 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcC----CCc
Confidence 347999999999999999888764 77899999999876554433 24678999994 33333 667
Q ss_pred CceeEEEec
Q 012337 338 HTLSFFVLD 346 (465)
Q Consensus 338 ~~i~~lViD 346 (465)
..+.+||.=
T Consensus 97 ~~~~~Vi~~ 105 (165)
T 1fuk_A 97 QQVSLVINY 105 (165)
T ss_dssp CSCSEEEES
T ss_pred ccCCEEEEe
Confidence 788888763
No 116
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.32 E-value=0.24 Score=44.81 Aligned_cols=70 Identities=20% Similarity=0.363 Sum_probs=54.5
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
.++||.++|+.-+..++..|... ++.+..++|+.+...+...+ .+..+|+|||. ++..| +++.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----idi~ 98 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAARG----LDIP 98 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTCS----SSCC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhcC----CCCc
Confidence 37999999999999999988775 78899999999887655443 24678999994 33433 6788
Q ss_pred ceeEEEe
Q 012337 339 TLSFFVL 345 (465)
Q Consensus 339 ~i~~lVi 345 (465)
.+.+||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8888774
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.20 E-value=0.064 Score=57.15 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=65.4
Q ss_pred CCcHHHHHHHHHHHhc-CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 195 EPTPIQKACIPAAAHQ-GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~-~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
.+|.-|.+++..++.- ..-.++.|+-|.|||.+..+.+-... ..++|.+||.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~--------------------------~~~~vtAP~~~ 228 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA--------------------------GRAIVTAPAKA 228 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS--------------------------SCEEEECSSCC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH--------------------------hCcEEECCCHH
Confidence 6899999999877531 22468899999999966555443211 13699999998
Q ss_pred HHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhh
Q 012337 274 LALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 274 La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~ 353 (465)
-+..+.+.... .|-+..|..+.. .+...++||||||=.|-
T Consensus 229 a~~~l~~~~~~-----------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaIp- 268 (671)
T 2zpa_A 229 STDVLAQFAGE-----------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAIP- 268 (671)
T ss_dssp SCHHHHHHHGG-----------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGSC-
T ss_pred HHHHHHHHhhC-----------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcCC-
Confidence 76544332210 144557765431 13458899999997553
Q ss_pred cCCHHHHHHHHH
Q 012337 354 NGHFRELQSIID 365 (465)
Q Consensus 354 ~~~~~~l~~i~~ 365 (465)
...+..++.
T Consensus 269 ---~pll~~ll~ 277 (671)
T 2zpa_A 269 ---APLLHQLVS 277 (671)
T ss_dssp ---HHHHHHHHT
T ss_pred ---HHHHHHHHh
Confidence 455566663
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.11 E-value=0.044 Score=49.19 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCChhHH
Q 012337 211 GKDIIGAAETGSGKTLA 227 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~ 227 (465)
++=.++.|+.|||||.-
T Consensus 20 g~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE 36 (195)
T ss_dssp CEEEEEEECTTSCHHHH
T ss_pred eEEEEEECCCCCcHHHH
Confidence 55678899999999954
No 119
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.07 E-value=0.35 Score=47.40 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999654
No 120
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.60 E-value=0.27 Score=42.81 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=54.1
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
.++||.++++..|..++..|... ++.+..++|+.+.......+ .+...|+|||.- +..| +++.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G----ldi~ 98 (172)
T 1t5i_A 32 NQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FGRG----MDIE 98 (172)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CSTT----CCGG
T ss_pred CcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hhcC----cchh
Confidence 47999999999999999888765 78899999999876654433 246799999952 2333 6678
Q ss_pred ceeEEEec
Q 012337 339 TLSFFVLD 346 (465)
Q Consensus 339 ~i~~lViD 346 (465)
.+.+||.=
T Consensus 99 ~~~~Vi~~ 106 (172)
T 1t5i_A 99 RVNIAFNY 106 (172)
T ss_dssp GCSEEEES
T ss_pred hCCEEEEE
Confidence 88888763
No 121
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.52 E-value=0.23 Score=47.81 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=18.1
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHh
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDM 366 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~ 366 (465)
....+|||||+|.|........+..+++.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 36789999999988512233444444443
No 122
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.51 E-value=0.18 Score=48.31 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=29.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHH-HHhcCCcEEEEcCCCCChhHHh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPA-AAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~-~~i~~-~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.++.-...+.+.+...- -.|+.. ..+.. -+..++.+++.||+|+|||+..
T Consensus 12 ~~~~di~G~~~~~~~l~~~v---~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELV---QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 56777766666655554420 011110 01111 1234668999999999999764
No 123
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.47 E-value=0.18 Score=49.24 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999653
No 124
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.37 E-value=0.17 Score=46.61 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQ 234 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~ 234 (465)
.|+=.++.|+.|||||...+--+.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r 42 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRR 42 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH
Confidence 3566788999999999775444443
No 125
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.01 E-value=0.14 Score=48.83 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+.++++.||+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 447999999999999764
No 126
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.87 E-value=0.43 Score=46.34 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=23.0
Q ss_pred CcHHHHHHHHHH---HhcCC---cEEEEcCCCCChhHHhh
Q 012337 196 PTPIQKACIPAA---AHQGK---DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 196 p~~iQ~~~i~~~---l~~~~---dvl~~a~TGsGKT~~~~ 229 (465)
+.|+|..++..+ +.+++ .+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 356776665443 23443 48999999999996644
No 127
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=92.77 E-value=0.16 Score=44.99 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=44.8
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++|+..|..++..|... ++.+..++|+.+...+...+ .+...|||||. .+..| +++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ldi 112 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LDI 112 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------CC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhcC----CCc
Confidence 457999999999999999888764 78899999988765432222 34678999994 23333 667
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
..+.+||.
T Consensus 113 ~~~~~VI~ 120 (185)
T 2jgn_A 113 SNVKHVIN 120 (185)
T ss_dssp CSBSEEEE
T ss_pred ccCCEEEE
Confidence 78888776
No 128
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.56 E-value=0.11 Score=47.32 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRE 273 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~ 273 (465)
|+=.++.|+.|||||...+--+.+... .+-+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~-----------------------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF-----------------------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH-----------------------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-----------------------CCCEEEEEEeccC
Confidence 444578999999999775544444331 1347999998764
No 129
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.43 E-value=1 Score=42.83 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=14.2
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999654
No 130
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.16 E-value=0.71 Score=44.59 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999654
No 131
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.15 E-value=0.37 Score=48.74 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=32.9
Q ss_pred CceeEEEecchhHhh---hcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceEEEEeeeccC-cHHHHHH
Q 012337 338 HTLSFFVLDEADRMI---ENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQTLVFSATIAL-SADFRKK 413 (465)
Q Consensus 338 ~~i~~lViDEah~ll---~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~i~~SATl~~-~~~~~~~ 413 (465)
..+++||||.+-++. +..+...+..+...+. +..-+++++|+... ..+.++.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~------------------------pd~vlLVlDa~~gq~a~~~a~~ 233 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK------------------------PDDVILVIDASIGQKAYDLASR 233 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC------------------------CSEEEEEEEGGGGGGGHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC------------------------CcceEEEEeCccchHHHHHHHH
Confidence 467889999987542 3345566666666664 34556778887753 2344444
Q ss_pred hh
Q 012337 414 LK 415 (465)
Q Consensus 414 l~ 415 (465)
+.
T Consensus 234 f~ 235 (433)
T 3kl4_A 234 FH 235 (433)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 132
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.00 E-value=0.69 Score=45.72 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=56.4
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccc
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~ 336 (465)
.+.++||.++|+..|..+++.|... ++.+..++|+.+...+...+ .+..+|||||. .+..| ++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----id 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CC
Confidence 3558999999999999999888764 78899999999876554433 24679999995 45554 77
Q ss_pred cCceeEEEe
Q 012337 337 LHTLSFFVL 345 (465)
Q Consensus 337 l~~i~~lVi 345 (465)
+..+.+||.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 888988875
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.88 E-value=0.35 Score=47.01 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=20.7
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
....+|||||+|. ++......+..++...+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 4567999999998 44555666666666543
No 134
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=91.84 E-value=0.52 Score=45.19 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=53.1
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
.++||.++|+.-+..++..|... ++.+..++|+.+...+...+ .+..+|+|||. ++..+ +++.
T Consensus 29 ~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~G----idi~ 95 (300)
T 3i32_A 29 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAARG----LDIP 95 (300)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTCS----TTCC
T ss_pred CCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhcC----cccc
Confidence 47999999999998888877653 78899999999876654443 34678999994 33333 6778
Q ss_pred ceeEEEe
Q 012337 339 TLSFFVL 345 (465)
Q Consensus 339 ~i~~lVi 345 (465)
.+.+||.
T Consensus 96 ~v~~VI~ 102 (300)
T 3i32_A 96 QVDLVVH 102 (300)
T ss_dssp CCSEEEE
T ss_pred ceeEEEE
Confidence 8887774
No 135
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.74 E-value=0.14 Score=46.70 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=51.3
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccC
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGI 289 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~ 289 (465)
+|.=.+++++.|||||...+--+ .+... .+.+++|+.|...--. ....+....
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~----------------------~g~kvli~kp~~D~R~----~~~~I~Sr~ 79 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIY----------------------AKQKVVVFKPAIDDRY----HKEKVVSHN 79 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHH----------------------TTCCEEEEEEC---------------CBT
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHH----------------------cCCceEEEEeccCCcc----hhhhHHHhc
Confidence 46667899999999996544333 22211 1346899988653110 001122222
Q ss_pred CceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHH
Q 012337 290 NVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSII 364 (465)
Q Consensus 290 ~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~ 364 (465)
++.. ..+.|..+.-|+..+ ...+.+|+||||..+- ......+..+.
T Consensus 80 G~~~-------------------~a~~v~~~~di~~~i---------~~~~dvV~IDEaQFf~-~~~v~~l~~la 125 (219)
T 3e2i_A 80 GNAI-------------------EAINISKASEIMTHD---------LTNVDVIGIDEVQFFD-DEIVSIVEKLS 125 (219)
T ss_dssp TBCC-------------------EEEEESSGGGGGGSC---------CTTCSEEEECCGGGSC-THHHHHHHHHH
T ss_pred CCce-------------------eeEEeCCHHHHHHHH---------hcCCCEEEEechhcCC-HHHHHHHHHHH
Confidence 3221 235555554443322 2467899999999764 33444454444
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.73 E-value=0.23 Score=48.75 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=14.3
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 137
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.67 E-value=0.32 Score=46.93 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=30.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----hcCCcEEEEcCCCCChhHHh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA----HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l----~~~~dvl~~a~TGsGKT~~~ 228 (465)
...|.++.-...+.+.+...-. .|.. .|.++ ...+.+|+.||+|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3568888777777666654310 1111 11111 12357999999999999754
No 138
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.33 E-value=0.58 Score=47.57 Aligned_cols=27 Identities=37% Similarity=0.366 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
..|.-+++.|++|+|||.. ++.++.++
T Consensus 201 ~~G~liiI~G~pG~GKTtl-~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAF-ALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHH-HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 3567789999999999954 44444433
No 139
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.30 E-value=0.6 Score=42.48 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCChhHHhhH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~l 230 (465)
..|.-+++.|++|+|||...+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~ 42 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQ 42 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3577899999999999966443
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.09 E-value=0.2 Score=45.25 Aligned_cols=20 Identities=40% Similarity=0.315 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.|.-+++.||+|+|||....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56788999999999996543
No 141
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.86 E-value=0.47 Score=46.59 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
.+.+|+.||+|+|||+..
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 457999999999999764
No 142
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.83 E-value=0.61 Score=45.92 Aligned_cols=71 Identities=20% Similarity=0.339 Sum_probs=55.6
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++++..|..++..|... ++.+..++|+.....+...+ .+..+|||||. .+..| +++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi 332 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDV 332 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS----CCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC----CCc
Confidence 348999999999999999988775 67889999999876654433 24678999995 34444 778
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
..+.+||.
T Consensus 333 p~~~~Vi~ 340 (412)
T 3fht_A 333 EQVSVVIN 340 (412)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 89998884
No 143
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.76 E-value=1.8 Score=44.86 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=58.0
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++|+.-|..++..|..... .++.+..++|+.....+...+ .+..+|||||. ++..| +++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G----iDi 408 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MDF 408 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CCC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhcC----CCc
Confidence 45899999999999999999987643 367899999999876654433 35789999996 34444 778
Q ss_pred CceeEEEecc
Q 012337 338 HTLSFFVLDE 347 (465)
Q Consensus 338 ~~i~~lViDE 347 (465)
..+.+||.-.
T Consensus 409 p~v~~VI~~~ 418 (563)
T 3i5x_A 409 PNVHEVLQIG 418 (563)
T ss_dssp TTCCEEEEES
T ss_pred ccCCEEEEEC
Confidence 8888887543
No 144
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.66 E-value=1.1 Score=43.60 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.8
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.||.|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999664
No 145
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.40 E-value=0.44 Score=46.04 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..+++.||+|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999754
No 146
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.36 E-value=0.66 Score=45.38 Aligned_cols=74 Identities=16% Similarity=0.265 Sum_probs=56.4
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++++..|..+++.|... ++.+..++|+.+...+...+ .+...|||||. .+..| +++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----idi 316 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG----MDI 316 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSSC----BCC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhcC----CCc
Confidence 458999999999999999988764 77889999999876554333 24678999994 33333 778
Q ss_pred CceeEEEecch
Q 012337 338 HTLSFFVLDEA 348 (465)
Q Consensus 338 ~~i~~lViDEa 348 (465)
..+.+||.-..
T Consensus 317 ~~~~~Vi~~~~ 327 (391)
T 1xti_A 317 ERVNIAFNYDM 327 (391)
T ss_dssp TTEEEEEESSC
T ss_pred ccCCEEEEeCC
Confidence 88999887543
No 147
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.12 E-value=0.77 Score=44.77 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=58.1
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccc
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~ 336 (465)
.+.++||.++++.-|..++..|... ++.+..++|+.+...+...+ .+..+|||||. .+..| ++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----id 308 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG----ID 308 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS----CC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC----CC
Confidence 3458999999999999999888765 67889999999876554433 24678999995 34444 77
Q ss_pred cCceeEEEecchh
Q 012337 337 LHTLSFFVLDEAD 349 (465)
Q Consensus 337 l~~i~~lViDEah 349 (465)
+..+.+||.-...
T Consensus 309 ip~~~~Vi~~~~p 321 (395)
T 3pey_A 309 IPTVSMVVNYDLP 321 (395)
T ss_dssp CTTEEEEEESSCC
T ss_pred cccCCEEEEcCCC
Confidence 8899998875444
No 148
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=89.91 E-value=1.3 Score=47.32 Aligned_cols=94 Identities=22% Similarity=0.339 Sum_probs=67.0
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH---h-CCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~---~-~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++|+..|..++..|... ++.+..++|+.+...+...+ + +..+|+|||. ++..| +++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~G----lDi 511 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG----LDI 511 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTT----CCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCC----ccc
Confidence 348999999999999999888775 77888899998876554442 2 4689999995 33443 778
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
..+.+||+=+++...-......+.+.+.+..
T Consensus 512 p~v~lVi~~d~d~~G~p~s~~~~iQr~GRag 542 (661)
T 2d7d_A 512 PEVSLVAILDADKEGFLRSERSLIQTIGRAA 542 (661)
T ss_dssp TTEEEEEETTTTCCTTTTSHHHHHHHHHTTT
T ss_pred CCCCEEEEeCcccccCCCCHHHHHHHhCccc
Confidence 8999999988875432223444444444443
No 149
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=89.82 E-value=0.82 Score=44.93 Aligned_cols=71 Identities=8% Similarity=0.245 Sum_probs=54.9
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++++..|..+++.|... ++.+..++|+.+...+...+ .+...|||||. .+..| +++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~G----idi 324 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTRG----IDI 324 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSSS----CCC
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccccC----CCc
Confidence 348999999999999999998876 67888999999876554333 24678999994 33333 778
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
..+.+||.
T Consensus 325 p~~~~Vi~ 332 (400)
T 1s2m_A 325 QAVNVVIN 332 (400)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 88888885
No 150
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=89.66 E-value=0.69 Score=44.63 Aligned_cols=73 Identities=16% Similarity=0.398 Sum_probs=54.5
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccc
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~ 336 (465)
.+.++||.++++.-|..+++.|... ++.+..++|+.+...+...+ .+..+|+|||. .+..| ++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id 303 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG----ID 303 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH----CC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----CC
Confidence 3457999999999999999988775 77899999999876554333 24678999995 22222 66
Q ss_pred cCceeEEEec
Q 012337 337 LHTLSFFVLD 346 (465)
Q Consensus 337 l~~i~~lViD 346 (465)
+..+.+||.-
T Consensus 304 ~~~~~~Vi~~ 313 (367)
T 1hv8_A 304 VNDLNCVINY 313 (367)
T ss_dssp CSCCSEEEES
T ss_pred cccCCEEEEe
Confidence 7788888764
No 151
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.45 E-value=0.85 Score=48.09 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccc
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~ 336 (465)
.+.++||.++|+.-|.+++..|... ++.+..++|+.+...+...+ .+..+|||||. .+..| ++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~~~G----ID 332 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AFGMG----ID 332 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TSCTT----CC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hhhcC----CC
Confidence 3457999999999999999998775 78899999999876554332 35678999994 22222 55
Q ss_pred cCceeEEEe
Q 012337 337 LHTLSFFVL 345 (465)
Q Consensus 337 l~~i~~lVi 345 (465)
+.++++||.
T Consensus 333 ~p~V~~VI~ 341 (591)
T 2v1x_A 333 KPDVRFVIH 341 (591)
T ss_dssp CSCEEEEEE
T ss_pred cccccEEEE
Confidence 666766663
No 152
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.36 E-value=1.3 Score=40.31 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCCChhHHhhH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~l 230 (465)
..|.-+.+.||+|||||.....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQ 49 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 4688899999999999976543
No 153
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=89.35 E-value=2.7 Score=43.83 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=57.9
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++|+..|..++..|..... .++.+..++|+.....+...+ .+..+|||||. .+..| +++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~G----iDi 357 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MDF 357 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CCC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhcC----CCc
Confidence 45899999999999999999987643 367899999999876654433 35689999995 33443 778
Q ss_pred CceeEEEecc
Q 012337 338 HTLSFFVLDE 347 (465)
Q Consensus 338 ~~i~~lViDE 347 (465)
..+.+||.-.
T Consensus 358 p~v~~VI~~~ 367 (579)
T 3sqw_A 358 PNVHEVLQIG 367 (579)
T ss_dssp TTCCEEEEES
T ss_pred ccCCEEEEcC
Confidence 8888887644
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.24 E-value=0.86 Score=43.25 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.9
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.||+|+|||...
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 5999999999999653
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.23 E-value=0.88 Score=46.07 Aligned_cols=26 Identities=38% Similarity=0.285 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|.-+++.|++|+|||.. ++.++.++
T Consensus 199 ~G~l~ii~G~pg~GKT~l-al~ia~~~ 224 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAF-ALTIAQNA 224 (444)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHH
Confidence 466789999999999954 44444443
No 156
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=88.97 E-value=1 Score=44.44 Aligned_cols=70 Identities=19% Similarity=0.394 Sum_probs=54.6
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
.++||.++++..|..+++.|... ++.+..++|+.+...+...+ .+...|||||. .+..| +++.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi~ 343 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWARG----LDVP 343 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSSS----CCCT
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhCc----CCcc
Confidence 48999999999999999888764 77889999999876554433 24678999995 34443 7788
Q ss_pred ceeEEEe
Q 012337 339 TLSFFVL 345 (465)
Q Consensus 339 ~i~~lVi 345 (465)
.+.+||.
T Consensus 344 ~v~~Vi~ 350 (410)
T 2j0s_A 344 QVSLIIN 350 (410)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 9988885
No 157
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.90 E-value=0.67 Score=47.67 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
....+|+.||+|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3467999999999999754
No 158
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=88.45 E-value=1.2 Score=44.69 Aligned_cols=69 Identities=16% Similarity=0.285 Sum_probs=54.6
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccCc
Q 012337 264 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHT 339 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 339 (465)
++||.++|+.-|..+++.|... ++.+..++|+.....+...+ .+...|||||. .+..| +++..
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~rG----lDi~~ 368 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASRG----LDIKN 368 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTSS----CCCTT
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhCC----CCccc
Confidence 3999999999999999888764 78899999999876654443 24679999996 34444 77888
Q ss_pred eeEEEe
Q 012337 340 LSFFVL 345 (465)
Q Consensus 340 i~~lVi 345 (465)
+.+||.
T Consensus 369 v~~VI~ 374 (434)
T 2db3_A 369 IKHVIN 374 (434)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 998885
No 159
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=88.12 E-value=0.089 Score=45.80 Aligned_cols=70 Identities=19% Similarity=0.369 Sum_probs=50.2
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~ 338 (465)
.++||.++++..|..++..|... ++.+..++|+.+.......+ .+...|||||. ++..| +++.
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~~ 97 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDIP 97 (170)
Confidence 47999999999999988888765 67888899988765443332 23568999993 23333 5677
Q ss_pred ceeEEEe
Q 012337 339 TLSFFVL 345 (465)
Q Consensus 339 ~i~~lVi 345 (465)
.+.+||.
T Consensus 98 ~~~~Vi~ 104 (170)
T 2yjt_D 98 DVSHVFN 104 (170)
Confidence 7777765
No 160
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.31 E-value=3.1 Score=37.13 Aligned_cols=26 Identities=27% Similarity=0.083 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
...+++...+|.|||.+.+-.++..+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~ 53 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV 53 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788889999999999877777665
No 161
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.19 E-value=0.92 Score=43.26 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 468999999999999653
No 162
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.49 E-value=15 Score=34.84 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=19.3
Q ss_pred eEEEecchhHhhh---cCCHHHHHHHHHhC
Q 012337 341 SFFVLDEADRMIE---NGHFRELQSIIDML 367 (465)
Q Consensus 341 ~~lViDEah~ll~---~~~~~~l~~i~~~l 367 (465)
-+|||||+|.+.. ..+...+..++...
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~ 168 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNL 168 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHC
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcC
Confidence 3789999999864 35666676666553
No 163
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.39 E-value=1.4 Score=45.73 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=43.5
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeCh
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTP 320 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP 320 (465)
.++||.++||.-|..++..|... ++.+..++|+.+...+...+ .+..+|||||.
T Consensus 237 ~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~ 294 (523)
T 1oyw_A 237 KSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294 (523)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred CcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 46999999999999999988775 78899999999876543332 34678999995
No 164
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=86.91 E-value=1.7 Score=46.36 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=58.5
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH---h-CCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---K-ARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~---~-~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++|+..|..++..|... ++.+..++|+.+...+...+ . +..+|+|||. .+..| +++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~G----lDi 505 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLREG----LDI 505 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCTT----CCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhcC----ccC
Confidence 348999999999999999888775 67888899998876554442 2 4689999984 23333 778
Q ss_pred CceeEEEecchhH
Q 012337 338 HTLSFFVLDEADR 350 (465)
Q Consensus 338 ~~i~~lViDEah~ 350 (465)
..+.+||+=+++.
T Consensus 506 p~v~lVI~~d~d~ 518 (664)
T 1c4o_A 506 PEVSLVAILDADK 518 (664)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCCEEEEeCCcc
Confidence 8999998887764
No 165
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.86 E-value=0.62 Score=45.50 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=18.9
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
..|.-+++.|++|+|||.. ++-++.++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~-al~ia~~~ 70 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSL-MMNMVLSA 70 (338)
T ss_dssp CTTCEEEEEECTTSCHHHH-HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHH-HHHHHHHH
Confidence 3566789999999999954 44444433
No 166
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.40 E-value=2 Score=41.31 Aligned_cols=21 Identities=29% Similarity=0.029 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCChhHHhhH
Q 012337 210 QGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~l 230 (465)
.|.-+++.|++|+|||...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~ 126 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQ 126 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHH
Confidence 467799999999999965443
No 167
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.25 E-value=1.6 Score=42.02 Aligned_cols=22 Identities=23% Similarity=0.049 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHHhhH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~l 230 (465)
..|.-++++|++|+|||...+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ 87 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALK 87 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 3577799999999999954333
No 168
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.87 E-value=0.59 Score=42.62 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQ 234 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~ 234 (465)
.|.-+++.|++|+|||...+-.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999554333333
No 169
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=85.84 E-value=0.75 Score=46.52 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=47.3
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeE
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 342 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~ 342 (465)
.++||++|+++-|..+++.|... ++.+..++|............+..+|||||. .+..+ +++. +.+
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e~G----iDip-v~~ 243 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEMG----ANLC-VER 243 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STTCC----TTCC-CSE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhhee----eccC-ceE
Confidence 47999999999999999988775 7889999995443333333345689999995 34443 6677 777
Q ss_pred EE
Q 012337 343 FV 344 (465)
Q Consensus 343 lV 344 (465)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 170
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.81 E-value=3.2 Score=38.76 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=18.3
Q ss_pred hcCCcEEEEcCCCCChhHHhhHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lp 231 (465)
..|.-+++.|++|+|||......
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHH
Confidence 46888999999999999664433
No 171
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.75 E-value=0.56 Score=39.41 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..+.+|++.|++|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46789999999999999764
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.34 E-value=3.3 Score=39.63 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=16.4
Q ss_pred HHhcCC--cEEEEcCCCCChhHHh
Q 012337 207 AAHQGK--DIIGAAETGSGKTLAF 228 (465)
Q Consensus 207 ~l~~~~--dvl~~a~TGsGKT~~~ 228 (465)
++.+++ ..|+.||.|+|||.+.
T Consensus 12 ~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 12 IIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHCCCCcEEEEECCCCCCHHHHH
Confidence 344444 6899999999998654
No 173
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.19 E-value=0.57 Score=39.29 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..+.++++.|++|+|||...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 46789999999999999653
No 174
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.12 E-value=0.8 Score=47.39 Aligned_cols=40 Identities=25% Similarity=0.106 Sum_probs=28.7
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHH
Q 012337 186 KSIYRLGFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 186 ~~l~~~g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~ 227 (465)
..+...|. +++.+...+...+..|..++++||||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44455553 34555555656667889999999999999965
No 175
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=84.58 E-value=1.3 Score=50.56 Aligned_cols=92 Identities=18% Similarity=0.318 Sum_probs=66.5
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.+++|++|+++-+..+++.|.... .++.+..++|+++.......+ .+..+|||||. ++..| +++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e~G----iDi 880 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIETG----IDI 880 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGGG----SCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cceee----ecc
Confidence 4589999999999999999998763 367899999999876554333 35689999996 44444 788
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.++.+||+..++.. + ...+.+.+.+..
T Consensus 881 p~v~~VIi~~~~~~---~-l~~l~Qr~GRvg 907 (1151)
T 2eyq_A 881 PTANTIIIERADHF---G-LAQLHQLRGRVG 907 (1151)
T ss_dssp TTEEEEEETTTTSS---C-HHHHHHHHTTCC
T ss_pred cCCcEEEEeCCCCC---C-HHHHHHHHhccC
Confidence 99999998777632 2 234445554443
No 176
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=84.44 E-value=4.6 Score=39.61 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.5
Q ss_pred CCcEEE--EcCCCCChhHHh
Q 012337 211 GKDIIG--AAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~--~a~TGsGKT~~~ 228 (465)
+..+++ .|+.|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 346888 899999999653
No 177
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.11 E-value=1.6 Score=43.44 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=51.5
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEec--------CCCHHHHHHHH----hCCCcEEEeChHHHHHHHhC
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG--------GMSTEKQERLL----KARPELVVGTPGRLWELMSG 329 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~g--------g~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~ 329 (465)
+.++||.++++..+..+++.|... ++.+..++| +++...+...+ .+...|||||. .+..
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~~~ 431 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VGEE 431 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GGGG
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cccc
Confidence 558999999999999999888775 788889998 55543332222 24678999994 2333
Q ss_pred CCccccccCceeEEEecch
Q 012337 330 GEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 330 ~~~~~~~l~~i~~lViDEa 348 (465)
| +++..+.+||+=..
T Consensus 432 G----ldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 432 G----LDVPEVDLVVFYEP 446 (494)
T ss_dssp G----GGSTTCCEEEESSC
T ss_pred C----CCchhCCEEEEeCC
Confidence 3 77888888886443
No 178
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=83.71 E-value=3.5 Score=42.14 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=38.1
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 286 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~ 286 (465)
.+..+.+.+-||||||++..-.+ .. ..+ .+|||+|+...|.|+++.|..++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-----~~--------------------~~~-p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-----ER--------------------HAG-PVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-----HH--------------------SSS-CEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-----HH--------------------hCC-CEEEEeCCHHHHHHHHHHHHhhC
Confidence 46678899999999987532211 11 012 38999999999999999999875
No 179
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=83.38 E-value=4.4 Score=40.92 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCChhHHhh
Q 012337 212 KDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~ 229 (465)
.-+++++++|+|||....
T Consensus 101 ~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 357889999999997754
No 180
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.32 E-value=4 Score=39.03 Aligned_cols=23 Identities=26% Similarity=0.050 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCCChhHHhhHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpi 232 (465)
.|.-+++.|++|+|||...+-.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999996544333
No 181
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=81.84 E-value=1.6 Score=43.82 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=41.1
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeCh
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 320 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP 320 (465)
.++||++|++.-|..+++.|... ++++..++|+...........+..+|||||.
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 37999999999999999988775 7889999987433222223345789999996
No 182
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=80.95 E-value=3.9 Score=44.43 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=55.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHH-------ccCCceEEEEecCCCHHHHHHHHh---------CCCcEEEeChHHHHH
Q 012337 262 HLRALIITPTRELALQVTDHLKEVA-------KGINVRVVPIVGGMSTEKQERLLK---------ARPELVVGTPGRLWE 325 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~-------~~~~~~v~~~~gg~~~~~~~~~~~---------~~~dIiV~TP~~L~~ 325 (465)
+.++||.+|++.-|..++..|...+ ...++.+..++|+.+...+...+. +...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 4489999999999999999887632 225788999999999877765543 2458999995
Q ss_pred HHhCCCccccccCceeEEEe
Q 012337 326 LMSGGEKHLVELHTLSFFVL 345 (465)
Q Consensus 326 ~l~~~~~~~~~l~~i~~lVi 345 (465)
++..+ +++..+.+||-
T Consensus 378 iae~G----idIp~v~~VId 393 (773)
T 2xau_A 378 IAETS----LTIDGIVYVVD 393 (773)
T ss_dssp HHHHT----CCCTTEEEEEE
T ss_pred HHHhC----cCcCCeEEEEe
Confidence 33333 66788876663
No 183
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.94 E-value=0.92 Score=54.17 Aligned_cols=26 Identities=23% Similarity=0.041 Sum_probs=20.6
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQR 235 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~ 235 (465)
.+..+++++|+|+|||...+..+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999998765555443
No 184
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.22 E-value=1.8 Score=43.51 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLL 237 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~ 237 (465)
..++++.|+||||||... .+++..++
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~ 78 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGL 78 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 578999999999999874 34444443
No 185
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=78.92 E-value=4 Score=43.67 Aligned_cols=73 Identities=12% Similarity=0.205 Sum_probs=54.9
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHH---HHHHHHh---CCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 264 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTE---KQERLLK---ARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~---~~~~~~~---~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
..+|+++|+.-+.+++..|... ++.+..++|+.... .....+. +..+|||||. ++..+ +++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~G----lDi 388 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGMG----LNL 388 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGSS----CCC
T ss_pred CCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHCC----cCc
Confidence 3467799999888888888764 78899999999986 3444455 4479999996 34444 678
Q ss_pred CceeEEEecchhH
Q 012337 338 HTLSFFVLDEADR 350 (465)
Q Consensus 338 ~~i~~lViDEah~ 350 (465)
.+.+||+-.+.+
T Consensus 389 -~v~~VI~~~~~k 400 (677)
T 3rc3_A 389 -SIRRIIFYSLIK 400 (677)
T ss_dssp -CBSEEEESCSBC
T ss_pred -CccEEEECCccc
Confidence 899998877754
No 186
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=78.82 E-value=3.6 Score=38.90 Aligned_cols=69 Identities=10% Similarity=0.234 Sum_probs=50.1
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccc
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~ 336 (465)
.+.++||.++++..+..+++.+. .+..++|+.+...+...+ .+..+|||||. .+..| ++
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id 281 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASRG----LD 281 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHTT----CC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccccC----CC
Confidence 34579999999998887776554 466788998876554433 24679999995 45544 77
Q ss_pred cCceeEEEec
Q 012337 337 LHTLSFFVLD 346 (465)
Q Consensus 337 l~~i~~lViD 346 (465)
+..+.+||.-
T Consensus 282 ~~~~~~Vi~~ 291 (337)
T 2z0m_A 282 IPLVEKVINF 291 (337)
T ss_dssp CCCBSEEEES
T ss_pred ccCCCEEEEe
Confidence 8888888864
No 187
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=78.04 E-value=1.9 Score=46.06 Aligned_cols=68 Identities=10% Similarity=0.146 Sum_probs=47.5
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH-hCCCcEEEeChHHHHHHHhCCCccccccCce
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL-KARPELVVGTPGRLWELMSGGEKHLVELHTL 340 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~-~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i 340 (465)
+.++||++||+.-|..++..|... ++.+..++|.. .......+ .+..+|||||. ++..+ +++. +
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTd-----v~e~G----IDip-v 474 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTD-----ISEMG----ANFG-A 474 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECG-----GGGTT----CCCC-C
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEECc-----hhhcc----eeeC-C
Confidence 457999999999999988888764 78899999852 22222223 34679999995 34443 5666 6
Q ss_pred eEEE
Q 012337 341 SFFV 344 (465)
Q Consensus 341 ~~lV 344 (465)
.+||
T Consensus 475 ~~VI 478 (673)
T 2wv9_A 475 SRVI 478 (673)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 6665
No 188
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=77.99 E-value=2.6 Score=40.97 Aligned_cols=20 Identities=20% Similarity=-0.079 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.|.-+++.|++|+|||...+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999996543
No 189
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=77.61 E-value=4.8 Score=41.06 Aligned_cols=75 Identities=15% Similarity=0.325 Sum_probs=46.1
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEec--------CCCHHHHHHH---Hh--CCCcEEEeChHHHHHHHh
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG--------GMSTEKQERL---LK--ARPELVVGTPGRLWELMS 328 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~g--------g~~~~~~~~~---~~--~~~dIiV~TP~~L~~~l~ 328 (465)
..++||.++++..|..+++.|........+.+..++| +++...+... ++ +..+|||||. ++.
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 463 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----VAD 463 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----CTT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----hhh
Confidence 4589999999999999999998764333345555554 5554433222 22 3578999995 334
Q ss_pred CCCccccccCceeEEEe
Q 012337 329 GGEKHLVELHTLSFFVL 345 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lVi 345 (465)
.| +++..+.+||.
T Consensus 464 ~G----lDlp~v~~VI~ 476 (555)
T 3tbk_A 464 EG----IDIAECNLVIL 476 (555)
T ss_dssp CC----EETTSCSEEEE
T ss_pred cC----CccccCCEEEE
Confidence 43 78889988875
No 190
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=77.60 E-value=2 Score=37.85 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..++++||+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999764
No 191
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=77.52 E-value=1 Score=44.38 Aligned_cols=71 Identities=17% Similarity=0.378 Sum_probs=46.6
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh----CCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK----ARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~----~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
..++||.++++..|..+++.|... ++.+..++|+.....+...+. +...|||||. ++..| +++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi 346 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LLARG----IDV 346 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SCC------CCG
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----ccccC----CCc
Confidence 347999999999999988888654 778889999988765544332 3568999995 23332 667
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
..+.+||.
T Consensus 347 p~v~~Vi~ 354 (414)
T 3eiq_A 347 QQVSLVIN 354 (414)
T ss_dssp GGCSCEEE
T ss_pred cCCCEEEE
Confidence 78888775
No 192
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=77.14 E-value=2.5 Score=46.47 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
..+++++||+|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 457999999999999653
No 193
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=77.04 E-value=0.49 Score=48.18 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=0.0
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
..++||.+|++.-|..++..|... ++.+..++|+.+...+...+ .+..+|||||. ++..| +++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~G----lDi 399 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccccC----Ccc
Confidence 457999999999999988888765 67888899998765543332 23578999994 34443 677
Q ss_pred CceeEEE
Q 012337 338 HTLSFFV 344 (465)
Q Consensus 338 ~~i~~lV 344 (465)
..+.+||
T Consensus 400 p~v~~VI 406 (479)
T 3fmp_B 400 EQVSVVI 406 (479)
T ss_dssp -------
T ss_pred ccCCEEE
Confidence 8888776
No 194
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=76.38 E-value=4.1 Score=43.03 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=47.0
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeE
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSF 342 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~ 342 (465)
.++||.++|+.-|..+++.|... ++.+..++|...............+|||||. ++..+ +++. +.+
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~rG----iDi~-v~~ 421 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG----ANFR-AGR 421 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGGTT----CCCC-CSE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHHcC----cccC-ceE
Confidence 47999999999999999988875 6788888886332222222345789999996 34443 5554 665
Q ss_pred E
Q 012337 343 F 343 (465)
Q Consensus 343 l 343 (465)
|
T Consensus 422 V 422 (618)
T 2whx_A 422 V 422 (618)
T ss_dssp E
T ss_pred E
Confidence 5
No 195
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.53 E-value=2.8 Score=50.19 Aligned_cols=28 Identities=21% Similarity=0.006 Sum_probs=22.3
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
..+.++++++++|+|||...+..+.+.+
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678999999999999987666665554
No 196
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=75.22 E-value=4.4 Score=36.55 Aligned_cols=52 Identities=6% Similarity=0.051 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHhc---CCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 182 PLLMKSIYRLGFKEPTPIQKACIPAAAHQ---GKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 182 ~~l~~~l~~~g~~~p~~iQ~~~i~~~l~~---~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
..|.+-|.-+|+ .+... ...+..++.. .+.+++.||.|+|||..+ +.+++.+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 345555655554 33333 3444444432 135999999999999654 4455444
No 197
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=74.87 E-value=5.1 Score=45.79 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=41.7
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVA 286 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~ 286 (465)
..+|.|.-|||||.+-..-++..|+.... ......+....++|+|+=|+..|..+.+++....
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~-----------~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGG-----------SAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSS-----------SSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCc-----------ccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 45999999999999866666665531100 0000011234479999999999998888887654
No 198
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=74.66 E-value=2.3 Score=41.69 Aligned_cols=25 Identities=40% Similarity=0.473 Sum_probs=19.9
Q ss_pred HHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
+...+..|..++++||||||||...
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHH
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHH
Confidence 3344568999999999999999653
No 199
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=74.60 E-value=11 Score=37.71 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+.-+++.+++|+|||....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457778999999997644
No 200
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.82 E-value=1.6 Score=44.03 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=33.6
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 171 EFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~---g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
+..+|.+++--..+.+.|... .+..|.-++...+ ...+.+|+.||+|+|||+..
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~----~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI----RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC----CCCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCeeEEECcCCCCHHHHH
Confidence 456799998777777666542 1112222222211 13468999999999999763
No 201
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.43 E-value=2.2 Score=39.43 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..+..+++.|++|+|||...
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 45779999999999999653
No 202
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=73.24 E-value=1.2 Score=47.54 Aligned_cols=74 Identities=19% Similarity=0.430 Sum_probs=48.8
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHH--HccCCceEEEEecC--------CCHHHHHHHHh----CCCcEEEeChHHHHHHH
Q 012337 262 HLRALIITPTRELALQVTDHLKEV--AKGINVRVVPIVGG--------MSTEKQERLLK----ARPELVVGTPGRLWELM 327 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l--~~~~~~~v~~~~gg--------~~~~~~~~~~~----~~~dIiV~TP~~L~~~l 327 (465)
+.++||.++++..+..+++.|... ....++.+..++|+ ++...+...+. +..+|||||. ++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 458999999999999999988764 22236888899998 77765544432 3578999995 23
Q ss_pred hCCCccccccCceeEEE
Q 012337 328 SGGEKHLVELHTLSFFV 344 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lV 344 (465)
..| +++..+.+||
T Consensus 475 ~~G----IDip~v~~VI 487 (699)
T 4gl2_A 475 EEG----LDIKECNIVI 487 (699)
T ss_dssp CTT----SCCCSCCCCE
T ss_pred ccC----CccccCCEEE
Confidence 333 6677777776
No 203
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=72.49 E-value=3.7 Score=39.25 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+.++++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997643
No 204
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.81 E-value=7.9 Score=36.21 Aligned_cols=44 Identities=20% Similarity=0.136 Sum_probs=29.7
Q ss_pred HHHHHHHHCCCCCCcHHHHHH-HHHHHhcC---C-cEEEEcCCCCChhHHhh
Q 012337 183 LLMKSIYRLGFKEPTPIQKAC-IPAAAHQG---K-DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 183 ~l~~~l~~~g~~~p~~iQ~~~-i~~~l~~~---~-dvl~~a~TGsGKT~~~~ 229 (465)
.+.+-|.-.||. |++-.. +-.++... + .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 577777778874 566333 33444322 2 59999999999997765
No 205
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=71.63 E-value=3.4 Score=40.78 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCCChhHHhhHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lp 231 (465)
.+.++++.|+||||||...-..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~ 55 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKML 55 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHH
Confidence 4678999999999999764443
No 206
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=71.60 E-value=2.3 Score=36.31 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+++.|++|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999653
No 207
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=71.42 E-value=3.2 Score=41.89 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=47.0
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEE
Q 012337 264 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFF 343 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~l 343 (465)
++||.+||+.-|..++..|... ++.+..++|............+..+|||||. ++..| +++.. .+|
T Consensus 190 ~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~G----iDip~-~~V 255 (451)
T 2jlq_A 190 KTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG----ANFRA-GRV 255 (451)
T ss_dssp CEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGSS----CCCCC-SEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHhC----cCCCC-CEE
Confidence 7999999999999988888654 7788888887653222222235679999995 34444 55666 555
Q ss_pred E
Q 012337 344 V 344 (465)
Q Consensus 344 V 344 (465)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 208
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=71.41 E-value=12 Score=37.96 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=50.3
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCccccccCc
Q 012337 264 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVELHT 339 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~ 339 (465)
+.+|++..+.-+..+.+.|... +..+..++|+++.......+ .+..+|||||+..+- .| +++..
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~----~G----iDip~ 416 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS----TG----ISVKN 416 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH----HS----CCCCS
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh----cc----ccccc
Confidence 4445555566666666666543 45888999999876543322 356799999966553 33 67889
Q ss_pred eeEEEecchh
Q 012337 340 LSFFVLDEAD 349 (465)
Q Consensus 340 i~~lViDEah 349 (465)
+.+||+..+.
T Consensus 417 v~~vi~~~~~ 426 (510)
T 2oca_A 417 LHHVVLAHGV 426 (510)
T ss_dssp EEEEEESSCC
T ss_pred CcEEEEeCCC
Confidence 9999998776
No 209
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=71.35 E-value=4.5 Score=40.36 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=18.9
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| +++.|.||||||++.
T Consensus 132 lv~~~l-~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSL-DGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHH-TTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHh-CCcceEEEEECCCCCCCceEe
Confidence 455666 5776 567789999999985
No 210
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=71.34 E-value=1.9 Score=40.29 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+++.||||||||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 46778999999999999753
No 211
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=71.05 E-value=2.8 Score=41.21 Aligned_cols=23 Identities=30% Similarity=0.357 Sum_probs=17.4
Q ss_pred HHHhcCCc--EEEEcCCCCChhHHh
Q 012337 206 AAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 206 ~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
.++.+|.+ +++.|.||||||++.
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEEE
Confidence 34445776 688899999999874
No 212
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=70.98 E-value=4.7 Score=40.18 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCChhHHhhH
Q 012337 210 QGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~l 230 (465)
.|.-+++.+|+|+|||.....
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~ 197 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHT 197 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHH
Confidence 466789999999999966543
No 213
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=70.68 E-value=2.6 Score=39.23 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=30.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH-HhcCCcEEEEcCCCCChhHHh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQ-KACIPAA-AHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ-~~~i~~~-l~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.++.-.....+.+...-. .+++ ...+..+ +.....+++.||+|+|||...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 557777666666666654210 1111 1111111 124568999999999999654
No 214
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=70.33 E-value=7.8 Score=41.44 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=53.1
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHcc--------------------------------CCceEEEEecCCCHHHHHHHHh
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKG--------------------------------INVRVVPIVGGMSTEKQERLLK 310 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~--------------------------------~~~~v~~~~gg~~~~~~~~~~~ 310 (465)
.++||.+|+|.-|..++..+...... ....+..++|+.+...+.....
T Consensus 253 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~ 332 (715)
T 2va8_A 253 GQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEE 332 (715)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHH
Confidence 47999999999999999888764321 0134888999999876554433
Q ss_pred ----CCCcEEEeChHHHHHHHhCCCccccccCceeEEEec
Q 012337 311 ----ARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLD 346 (465)
Q Consensus 311 ----~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViD 346 (465)
+...|||||. .+..+ +++..+.+||.+
T Consensus 333 ~f~~g~~~vlvaT~-----~l~~G----idip~~~~VI~~ 363 (715)
T 2va8_A 333 GFRQRKIKVIVATP-----TLAAG----VNLPARTVIIGD 363 (715)
T ss_dssp HHHTTCSCEEEECG-----GGGGS----SCCCBSEEEECC
T ss_pred HHHcCCCeEEEECh-----HHhcc----cCCCceEEEEeC
Confidence 4679999995 33333 678888776643
No 215
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=69.70 E-value=3 Score=40.34 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=19.1
Q ss_pred HHHHHhcCCcEEEEcCCCCChhHH
Q 012337 204 IPAAAHQGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 204 i~~~l~~~~dvl~~a~TGsGKT~~ 227 (465)
+...+..|..+++.||||||||..
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHH
T ss_pred hhhhccCCCEEEEECCCCCCHHHH
Confidence 333445789999999999999964
No 216
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=69.40 E-value=3.2 Score=40.72 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=18.3
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| |++-|.||||||++.
T Consensus 96 lv~~~l-~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQAL-DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHh-CCCCEEEEEeCCCCCCccEEe
Confidence 455566 5665 566789999999874
No 217
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=69.16 E-value=2.9 Score=36.26 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.|+-++++||+|||||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999753
No 218
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=69.09 E-value=13 Score=35.04 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
++-+.+.+++|+|||....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SEEEEEECCTTTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457778999999997643
No 219
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=69.00 E-value=2.6 Score=44.92 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=42.2
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEec--------CCCHHHHHHH---Hh--CCCcEEEeChHHHHHHH
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVG--------GMSTEKQERL---LK--ARPELVVGTPGRLWELM 327 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~g--------g~~~~~~~~~---~~--~~~dIiV~TP~~L~~~l 327 (465)
.+.++||.++++..|..+++.|........+.+..++| +.+...+... +. +...|||||- ++
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hh
Confidence 34579999999999999999998753222367777755 6655444332 22 4578999994 33
Q ss_pred hCCCccccccCceeEEEe
Q 012337 328 SGGEKHLVELHTLSFFVL 345 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lVi 345 (465)
..| +++..+.+||.
T Consensus 472 ~~G----iDip~v~~VI~ 485 (696)
T 2ykg_A 472 DEG----IDIAQCNLVIL 485 (696)
T ss_dssp CCC-------CCCSEEEE
T ss_pred hcC----CcCccCCEEEE
Confidence 333 67788888775
No 220
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=68.84 E-value=2.1 Score=36.55 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 568999999999999654
No 221
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=68.55 E-value=2.8 Score=37.05 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.|+-+++.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999764
No 222
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=68.08 E-value=4.5 Score=40.53 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=19.1
Q ss_pred HHHHHHHHHh-cCCcEEEEcCCCCChhHH
Q 012337 200 QKACIPAAAH-QGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 200 Q~~~i~~~l~-~~~dvl~~a~TGsGKT~~ 227 (465)
+..++..++. .+.-+++.||||||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 4444444432 345689999999999965
No 223
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=67.88 E-value=6.7 Score=35.11 Aligned_cols=31 Identities=32% Similarity=0.314 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 197 TPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
+--|..++..+ ..|.-+.+.||+|||||..+
T Consensus 9 ~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAI-DTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHH-HHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhc-cCCCEEEEECCCCCCHHHHH
Confidence 33456677665 57888999999999999764
No 224
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=67.72 E-value=3.8 Score=39.56 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=17.8
Q ss_pred HHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
+..++ +|.| ++..|.||||||++.
T Consensus 70 v~~~l-~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVL-EGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHh-CCCeEEEEEECCCCCCCceEe
Confidence 44455 5665 677799999999874
No 225
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=67.18 E-value=3.6 Score=40.14 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=17.5
Q ss_pred HHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
+..++ +|.| +++.|.||||||++.
T Consensus 87 v~~~l-~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLL-EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHH-HTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhh-CCCceEEEEecCCCCCCCeEE
Confidence 44455 4665 577799999999874
No 226
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=67.05 E-value=3.3 Score=36.88 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.|.-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677899999999999754
No 227
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=66.97 E-value=1.2 Score=43.57 Aligned_cols=71 Identities=17% Similarity=0.387 Sum_probs=0.0
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH----hCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL----KARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
..++||.++++.-|..+++.|... ++.+..++|+.+...+...+ .+...|+|||. .+..| +++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----ldi 325 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hhhcC----CCc
Confidence 347999999999999888888764 67788888887765443332 23568999985 33333 667
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
..+.+||.
T Consensus 326 ~~~~~Vi~ 333 (394)
T 1fuu_A 326 QQVSLVIN 333 (394)
T ss_dssp --------
T ss_pred ccCCEEEE
Confidence 77777764
No 228
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=66.95 E-value=3.3 Score=36.44 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCChhHHhh
Q 012337 209 HQGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~ 229 (465)
..+..++++|++|||||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 357889999999999997643
No 229
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=66.51 E-value=14 Score=34.32 Aligned_cols=18 Identities=39% Similarity=0.386 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 678999999999999654
No 230
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=66.45 E-value=4.1 Score=40.03 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=17.9
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| ++..|.||||||++.
T Consensus 81 lv~~~l-~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAF-EGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHh-cCCeeEEEEeCCCCCCCceEe
Confidence 344555 5665 567789999999874
No 231
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=66.44 E-value=4.2 Score=39.37 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=18.7
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| +++.|.||||||++.
T Consensus 72 lv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCI-DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHh-CCCEEEEEeECCCCCCCcEEE
Confidence 455566 5766 567799999999875
No 232
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.29 E-value=2.5 Score=42.13 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=32.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-HhcCCcEEEEcCCCCChhHHh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~-~~i~~~-l~~~~dvl~~a~TGsGKT~~~ 228 (465)
+...|++.+=-....+.|... -..|+.. +.+..+ +...+.+|+.||+|+|||+..
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~---v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEV---IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 346788887666666666543 1122221 111111 123468999999999999764
No 233
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=66.13 E-value=4.3 Score=39.67 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=17.5
Q ss_pred HHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
+..++ +|.| +++.|.||||||++.
T Consensus 82 v~~~l-~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVL-EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHh-CCCceeEEeecCCCCCCCEEe
Confidence 34455 5665 567789999999874
No 234
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=65.98 E-value=4.1 Score=39.75 Aligned_cols=24 Identities=42% Similarity=0.565 Sum_probs=17.8
Q ss_pred HHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
+..++ +|.| +++.|+||||||++.
T Consensus 70 v~~~l-~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAI-QGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHH-cCCccceeeecCCCCCCCeEE
Confidence 44555 5665 567789999999885
No 235
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=65.97 E-value=4.1 Score=40.67 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=17.9
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| +++.|.||||||++.
T Consensus 146 lV~~~l-~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIF-EGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHH-TTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHh-cCCceeEEeecCCCCCCCeEe
Confidence 344555 5665 566789999999874
No 236
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=65.94 E-value=4.2 Score=39.95 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=17.6
Q ss_pred HHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
+..++ +|.| ++..|.||||||++.
T Consensus 77 v~~~l-~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVL-AGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHH-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHh-CCCceEEEeecCCCCCCceEE
Confidence 44455 5665 567799999999884
No 237
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=65.83 E-value=4.2 Score=40.10 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=17.4
Q ss_pred HHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
+..++ +|.| +++.|.||||||++.
T Consensus 94 v~~~l-~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVL-QGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHh-CCCeeeEEeecCCCCCCCEeE
Confidence 44455 5665 567789999999874
No 238
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=65.73 E-value=3.6 Score=39.22 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
.....+++.|++|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 35678999999999999753
No 239
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=65.70 E-value=4 Score=39.99 Aligned_cols=25 Identities=28% Similarity=0.516 Sum_probs=18.0
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| +++.|.||||||++.
T Consensus 80 lv~~~l-~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVI-MGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHh-CCCceEEEEeCCCCCCCceEE
Confidence 344555 5776 567789999999874
No 240
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=65.69 E-value=4.2 Score=39.84 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=18.1
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| +++.|.||||||++.
T Consensus 95 lv~~~l-~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQAL-DGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHH-TTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHh-CCCceEEEEECCCCCCCceEe
Confidence 444555 5766 566789999999874
No 241
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=65.60 E-value=3.1 Score=40.43 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+.-++++||||||||....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999996643
No 242
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=65.57 E-value=4.2 Score=39.78 Aligned_cols=25 Identities=32% Similarity=0.524 Sum_probs=18.2
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| +++.|.||||||++.
T Consensus 84 lv~~~l-~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAF-DGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHH-TTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHh-CCceeEEEeeCCCCCCCceEE
Confidence 344555 5766 567789999999885
No 243
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=65.29 E-value=4.4 Score=39.45 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=17.6
Q ss_pred HHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
+..++ +|.| ++..|+||||||++.
T Consensus 76 v~~~l-~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFF-EGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHH-hhcCeeEEEecccCCCceEee
Confidence 44455 5665 567789999999874
No 244
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=65.09 E-value=3.8 Score=40.34 Aligned_cols=25 Identities=36% Similarity=0.605 Sum_probs=18.6
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| ++..|.||||||++.
T Consensus 71 lv~~~l-~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAV-DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhh-cCCceEEEEECCCCCCCeEee
Confidence 455666 5776 566789999999885
No 245
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=65.08 E-value=3.2 Score=39.95 Aligned_cols=18 Identities=28% Similarity=0.073 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCChhHHhh
Q 012337 212 KDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~ 229 (465)
.-+++.||||||||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 357889999999996643
No 246
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=65.04 E-value=5 Score=40.51 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCCChhHHhhHHHH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGLPIM 233 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~lpil 233 (465)
..|.-+++.|++|+|||...+-.+.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3566789999999999955443333
No 247
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=65.00 E-value=3.2 Score=39.84 Aligned_cols=16 Identities=38% Similarity=0.260 Sum_probs=13.4
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-++++||||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999654
No 248
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=64.97 E-value=4.1 Score=40.75 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=18.8
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| |++.|.||||||++.
T Consensus 130 lv~~~l-~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSAL-DGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHH-CCCceEEEEecCCCCCCeeEe
Confidence 455666 5766 567789999999874
No 249
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=64.80 E-value=3.9 Score=35.25 Aligned_cols=19 Identities=26% Similarity=0.113 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
...++++|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999997643
No 250
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=64.68 E-value=4.3 Score=39.76 Aligned_cols=24 Identities=21% Similarity=0.498 Sum_probs=17.5
Q ss_pred HHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
+..++ +|.| +++.|.||||||++.
T Consensus 73 v~~~l-~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDIL-NGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHT-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHh-CCCcceEEEECCCCCCcceEe
Confidence 33455 5665 567799999999874
No 251
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=64.49 E-value=4.4 Score=39.98 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=17.4
Q ss_pred HHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
+..++ +|.| +++.|.||||||++.
T Consensus 93 v~~~l-~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVL-NGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHH-HTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHh-CCceEEEEeecCCCCCcceec
Confidence 44455 4665 567789999999874
No 252
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=64.39 E-value=4.3 Score=39.73 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=17.6
Q ss_pred HHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 204 IPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 204 i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
+..++ +|.| +++.|.||||||++.
T Consensus 98 v~~~l-~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFL-NGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHT-TTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHh-CCCceEEEEeCCCCCCceeee
Confidence 44455 5665 577789999999874
No 253
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=64.25 E-value=52 Score=35.60 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=51.4
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhC----CCc--EEEeChHHHHHHHhCCCcccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKA----RPE--LVVGTPGRLWELMSGGEKHLV 335 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~----~~d--IiV~TP~~L~~~l~~~~~~~~ 335 (465)
+-++||.+..+..+..+...|... ++.+..++|+++...+...+.. ... |+++|.. ....| +
T Consensus 572 g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~----agg~G----l 639 (800)
T 3mwy_W 572 GHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR----AGGLG----I 639 (800)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH----HHTTT----C
T ss_pred CCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc----cccCC----C
Confidence 458999999999888887777654 7888899999988776655532 222 4444432 23333 6
Q ss_pred ccCceeEEEecchh
Q 012337 336 ELHTLSFFVLDEAD 349 (465)
Q Consensus 336 ~l~~i~~lViDEah 349 (465)
+|..+..||+=+.+
T Consensus 640 NL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 640 NLMTADTVVIFDSD 653 (800)
T ss_dssp CCTTCCEEEESSCC
T ss_pred CccccceEEEecCC
Confidence 77788887764443
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=64.22 E-value=2.9 Score=35.22 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-++++|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 255
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=63.62 E-value=4.1 Score=35.69 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+++.|++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35778899999999999754
No 256
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=63.62 E-value=3.9 Score=37.31 Aligned_cols=19 Identities=32% Similarity=0.286 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
....+++.||+|+|||...
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999754
No 257
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=63.54 E-value=5 Score=40.55 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=18.2
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| |++.|.||||||++.
T Consensus 128 lv~~~l-~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNF-EGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhh-cCCceEEEEeCCCCCCCCEEe
Confidence 344555 5665 567789999999875
No 258
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=63.51 E-value=3.7 Score=36.81 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.++-+++.||||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4667899999999998553
No 259
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=63.43 E-value=3.7 Score=37.95 Aligned_cols=16 Identities=31% Similarity=-0.041 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-++++|+||||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3689999999999754
No 260
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=63.39 E-value=22 Score=33.99 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
++-+++.+++|+|||....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457888999999997643
No 261
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=63.39 E-value=3.2 Score=39.69 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..+.++++.||+|+|||...
T Consensus 44 ~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHTCCEEEESCCCHHHHHHH
T ss_pred HcCCeEEEECCCCCcHHHHH
Confidence 35889999999999999653
No 262
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=63.38 E-value=3.6 Score=40.32 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.8
Q ss_pred hcCCcEEEEcCCCCChhHH
Q 012337 209 HQGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~ 227 (465)
..+..+++.||||||||..
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3456899999999999965
No 263
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=63.11 E-value=6 Score=42.13 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=42.9
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeCh
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 320 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP 320 (465)
.+.++||.++|+.-|.++++.|... ++.+..++|+.....+ .+.+.+|||||.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd 447 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD 447 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC
Confidence 3458999999999999999888764 7899999999987542 235569999996
No 264
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=62.97 E-value=3.9 Score=38.32 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
++.+++.||+|+|||...
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999764
No 265
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=62.96 E-value=5 Score=39.74 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=18.2
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| +++.|.||||||++.
T Consensus 126 lv~~~l-~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIF-EGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHH-TTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHh-cCCceEEEEecCCCCCCCeEe
Confidence 344555 5665 567789999999885
No 266
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=62.82 E-value=4.4 Score=35.44 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+.+.||+|||||...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35777899999999999754
No 267
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=62.68 E-value=4.1 Score=39.62 Aligned_cols=18 Identities=44% Similarity=0.499 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+++.||+|+|||...
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999764
No 268
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=62.55 E-value=5.2 Score=39.47 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=47.7
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEE-EEecCCCHHHHHHHH-hCCCcEEEe----ChHHHHHHHhCCCccccc
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVV-PIVGGMSTEKQERLL-KARPELVVG----TPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~-~~~gg~~~~~~~~~~-~~~~dIiV~----TP~~L~~~l~~~~~~~~~ 336 (465)
.++||.++|+.-|..++..|... ++.+. .++|. .. . ...+ .+..+|||| |. ++..| ++
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~-~r-~-~~~f~~g~~~vLvat~s~T~-----~~~~G----iD 316 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF-EK-N-FEDFKVGKINILIGVQAYYG-----KLTRG----VD 316 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCH-HH-H-HHHHHTTSCSEEEEECCTTC-----CCCCC----CC
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCc-ch-H-HHHHhCCCCeEEEEecCcCc-----hhhcc----Cc
Confidence 57999999999999999988775 67777 66664 22 2 3333 346899999 63 23333 77
Q ss_pred cCc-eeEEEe
Q 012337 337 LHT-LSFFVL 345 (465)
Q Consensus 337 l~~-i~~lVi 345 (465)
+.. +.+||.
T Consensus 317 ip~~v~~VI~ 326 (414)
T 3oiy_A 317 LPERIKYVIF 326 (414)
T ss_dssp CTTTCCEEEE
T ss_pred cccccCEEEE
Confidence 888 888874
No 269
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.43 E-value=2.9 Score=42.23 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=30.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-HhcCCcEEEEcCCCCChhHHh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~-~~i~~~-l~~~~dvl~~a~TGsGKT~~~ 228 (465)
+...|.+++--....+.|...= -.|+.. +.+..+ +...+-+|+.||+|+|||+..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v---~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVI---ELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHH---HHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 3456888875555555554320 011110 111111 123468999999999999764
No 270
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=62.40 E-value=3.9 Score=39.57 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 357999999999999754
No 271
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=62.26 E-value=4.1 Score=39.79 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=18.7
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| +++.|.||||||++.
T Consensus 77 lv~~~l-~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSL-DGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGG-TTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHH-CCcceeEEEeCCCCCCCceEe
Confidence 455555 5776 566789999999875
No 272
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=61.95 E-value=4.8 Score=41.35 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 201 KACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 201 ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
..++-.+ ..+.++++.||+|+|||...
T Consensus 32 ~~l~~al-~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 32 RLCLLAA-LSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHH-HHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHH-hcCCeeEeecCchHHHHHHH
Confidence 3344344 46899999999999999653
No 273
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=61.87 E-value=3.6 Score=40.51 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|..+++.||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45778999999999999653
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=61.86 E-value=5 Score=34.03 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+..+++.|+.|||||...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCCEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999754
No 275
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=61.76 E-value=4 Score=40.42 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=17.0
Q ss_pred HHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 205 PAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 205 ~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
..++ +|.| +++.|.||||||++.
T Consensus 92 ~~~l-~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLL-EGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHT-TTCCEEEEEESCTTSSHHHHH
T ss_pred HHhh-cCceeeEeeecCCCCCCCeEe
Confidence 3455 5665 567789999999875
No 276
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=61.70 E-value=11 Score=38.70 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=19.7
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.+.++++.|.||||||.+.-..++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999976444343333
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=61.67 E-value=3.8 Score=34.97 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+.-++++|+.|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 278
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=61.66 E-value=5.1 Score=34.37 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.+..++++|++|||||...-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 46789999999999997643
No 279
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=61.59 E-value=11 Score=40.16 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=51.0
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHcc--------------------------CCceEEEEecCCCHHHHHHHHh----CC
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKG--------------------------INVRVVPIVGGMSTEKQERLLK----AR 312 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~--------------------------~~~~v~~~~gg~~~~~~~~~~~----~~ 312 (465)
.++||.+|+|.-|..++..+...... .+..+..++|+.+...+..... +.
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 322 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGN 322 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCC
Confidence 36999999999999998888765321 0134677899998866544332 46
Q ss_pred CcEEEeChHHHHHHHhCCCccccccCceeEEEe
Q 012337 313 PELVVGTPGRLWELMSGGEKHLVELHTLSFFVL 345 (465)
Q Consensus 313 ~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lVi 345 (465)
..|||||. .+..+ +++..+.+||.
T Consensus 323 ~~vlvaT~-----~l~~G----idip~~~~VI~ 346 (702)
T 2p6r_A 323 IKVVVATP-----TLAAG----VNLPARRVIVR 346 (702)
T ss_dssp CCEEEECS-----TTTSS----SCCCBSEEEEC
T ss_pred CeEEEECc-----HHhcc----CCCCceEEEEc
Confidence 78999996 23333 66777766553
No 280
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=61.16 E-value=71 Score=27.60 Aligned_cols=65 Identities=15% Similarity=-0.004 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEV 285 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l 285 (465)
|-.+-+.+..|-|-|+.+.+|+...-..... ..........+.++|||-........+...|...
T Consensus 20 gG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~----------~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 20 MASTDSESETRVKSVRTGRKPIGNPEDEQET----------SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp ---------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred CCceeeeccCCCcceeeeccCCCCCcccccc----------cCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 5567778889999999999997443211100 0011122345568999988877766666666543
No 281
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=61.09 E-value=26 Score=33.22 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+.-+++.+++|+|||....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 3457889999999997643
No 282
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=60.86 E-value=5.1 Score=35.67 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.|+-++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5788999999999999753
No 283
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=60.80 E-value=3.8 Score=37.53 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+++.||+|+|||...
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 457999999999999654
No 284
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=60.72 E-value=5.1 Score=40.95 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=34.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEE--------EecCCCHHHHHHH---Hh--CCCcEEEeChHHHHHHHh
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVP--------IVGGMSTEKQERL---LK--ARPELVVGTPGRLWELMS 328 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~--------~~gg~~~~~~~~~---~~--~~~dIiV~TP~~L~~~l~ 328 (465)
+.++||.++++..+..+.+.|.......++++.. ++|+++...+... ++ +..+|||||. ++.
T Consensus 390 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~~ 464 (556)
T 4a2p_A 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VAD 464 (556)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC--------
T ss_pred CceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----chh
Confidence 4589999999999999998887642111233333 3455554433222 22 3468999995 333
Q ss_pred CCCccccccCceeEEEe
Q 012337 329 GGEKHLVELHTLSFFVL 345 (465)
Q Consensus 329 ~~~~~~~~l~~i~~lVi 345 (465)
.| +++..+.+||.
T Consensus 465 ~G----iDip~v~~VI~ 477 (556)
T 4a2p_A 465 EG----IDIVQCNLVVL 477 (556)
T ss_dssp ------------CEEEE
T ss_pred cC----CCchhCCEEEE
Confidence 33 77888888885
No 285
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=60.71 E-value=5.2 Score=35.88 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+.+.||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46888999999999999653
No 286
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=60.42 E-value=8.2 Score=45.54 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHHHHHccCC
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLKEVAKGIN 290 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~ 290 (465)
|+-+.+.+|.|||||...+ |++....+ .+-.++||.+-.+|.... +..+ |
T Consensus 1431 g~~iei~g~~~sGkttl~~-~~~a~~~~----------------------~g~~~~~i~~e~~~~~~~---~~~~----G 1480 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTL-QVIAAAQR----------------------EGKTCAFIDAEHALDPIY---ARKL----G 1480 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHH-HHHHHHHH----------------------TTCCEEEECTTSCCCHHH---HHHT----T
T ss_pred CCEEEEEcCCCCCHHHHHH-HHHHHHHh----------------------cCCeEEEEecCCCCCHHH---HHHc----C
Confidence 4679999999999996644 44433322 133689998877775544 3333 3
Q ss_pred ceEEEEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCceeEEEecchhHhhh
Q 012337 291 VRVVPIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHTLSFFVLDEADRMIE 353 (465)
Q Consensus 291 ~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~ 353 (465)
+.+ -+++|.-|..-.++|.--. ....-..+++||||-+-.|..
T Consensus 1481 v~~-------------------~~l~~~~p~~~e~~l~~~~-~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1481 VDI-------------------DNLLCSQPDTGEQALEICD-ALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp CCG-------------------GGCEEECCSSHHHHHHHHH-HHHHHTCCSEEEESCSTTCCC
T ss_pred CCH-------------------HHeEEeCCCcHHHHHHHHH-HHHHcCCCCEEEEccHHhCCc
Confidence 322 1267777744322221100 011224578999999887663
No 287
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=60.41 E-value=5.2 Score=34.71 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45788999999999753
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=60.30 E-value=4.2 Score=35.20 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+++.|++|||||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35778999999999999753
No 289
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=60.08 E-value=15 Score=39.21 Aligned_cols=73 Identities=25% Similarity=0.274 Sum_probs=50.4
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHcc-----------------------------CCceEEEEecCCCHHHHHHHH----
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKG-----------------------------INVRVVPIVGGMSTEKQERLL---- 309 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~-----------------------------~~~~v~~~~gg~~~~~~~~~~---- 309 (465)
.++||.+|+|.-|..++..+...+.. ....+..++|+.+...+....
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 317 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR 317 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 46999999999999998888765321 012488899999987654332
Q ss_pred hCCCcEEEeChHHHHHHHhCCCccccccCceeEEE
Q 012337 310 KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 344 (465)
Q Consensus 310 ~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lV 344 (465)
.+...|||||. .+..+ +++..+.+||
T Consensus 318 ~g~~~vlvaT~-----~l~~G----vdip~~~~VI 343 (720)
T 2zj8_A 318 KGIIKAVVATP-----TLSAG----INTPAFRVII 343 (720)
T ss_dssp TTSSCEEEECS-----TTGGG----CCCCBSEEEE
T ss_pred CCCCeEEEECc-----Hhhcc----CCCCceEEEE
Confidence 24578999995 22222 6677776644
No 290
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=60.01 E-value=3.8 Score=39.97 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=18.1
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| +++.|.||||||++.
T Consensus 76 lv~~~l-~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSL-DGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGG-GTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhc-CCceeEEEEECCCCCCCcEec
Confidence 444555 5666 567789999999875
No 291
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=59.70 E-value=3.7 Score=35.31 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.|.-+.++||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46678899999999997654
No 292
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=59.61 E-value=6.5 Score=38.62 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|.-+++.+++|+|||. +++.++..+
T Consensus 73 ~G~li~I~G~pGsGKTt-lal~la~~~ 98 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTT-LALAIVAQA 98 (366)
T ss_dssp TTSEEEEEESTTSSHHH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHH-HHHHHHHHH
Confidence 46778999999999995 444454444
No 293
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=59.57 E-value=4 Score=36.00 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCChhHH
Q 012337 212 KDIIGAAETGSGKTLA 227 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~ 227 (465)
+-+|++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3489999999999964
No 294
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=59.54 E-value=4.7 Score=40.76 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=39.0
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeCh
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTP 320 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP 320 (465)
.++||.+||+.-|..++..|... ++.+..++|............+..+|||||.
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESS
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECC
Confidence 47999999999999999988775 7788888886322111111224578999995
No 295
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=59.39 E-value=5.7 Score=35.02 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.-++++||+|||||...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCEEEECCTTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 6788999999999999753
No 296
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=58.88 E-value=4.8 Score=38.83 Aligned_cols=17 Identities=29% Similarity=0.157 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..++++||||||||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999754
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=58.73 E-value=5.7 Score=35.87 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+++.||+|+|||..+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 57888999999999999754
No 298
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=58.65 E-value=7.1 Score=38.13 Aligned_cols=22 Identities=23% Similarity=0.010 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCChhHHhhHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lp 231 (465)
.|.-+++.+++|+|||...+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~l 83 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQV 83 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999654433
No 299
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=58.63 E-value=4.2 Score=34.59 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-++++|+.|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999754
No 300
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=58.32 E-value=13 Score=38.68 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 211 GKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
..++++.|.||||||.+.-..++..+
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999976544444443
No 301
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=58.23 E-value=4.7 Score=39.76 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=18.1
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| |++.|.||||||++.
T Consensus 107 lv~~~l-~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSAL-DGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGG-GTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhc-CCCceEEEEeCCCCCCCceEe
Confidence 444555 5665 566789999999874
No 302
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=58.21 E-value=7.7 Score=37.26 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..+++.||+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999764
No 303
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=58.14 E-value=10 Score=36.29 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=16.5
Q ss_pred HhcCC--cEEEEcCCCCChhHHhh
Q 012337 208 AHQGK--DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 208 l~~~~--dvl~~a~TGsGKT~~~~ 229 (465)
+.+|+ ++++.||+|+|||....
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHH
Confidence 34454 38999999999996643
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=57.95 E-value=6.1 Score=34.19 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+..++++|+.|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 305
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=57.80 E-value=5.4 Score=38.25 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=29.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH----hcCCcEEEEcCCCCChhHHh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKACIPAAA----HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~~i~~~l----~~~~dvl~~a~TGsGKT~~~ 228 (465)
...|.+++-...+.+.|...- -.|++ .|.++ ...+.+++.||+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 356888776666665554320 00111 01111 12367999999999999654
No 306
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=57.45 E-value=8 Score=33.36 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=16.8
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..+.-+++.|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45678999999999999764
No 307
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=57.33 E-value=6.3 Score=34.82 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+.+.||+|||||..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46888999999999999754
No 308
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=57.24 E-value=6 Score=38.63 Aligned_cols=18 Identities=44% Similarity=0.508 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+++.||+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 568999999999999764
No 309
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.89 E-value=12 Score=47.00 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=33.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH---HHHhcCCcEEEEcCCCCChhHHhh
Q 012337 181 HPLLMKSIYRLGFKEPTPIQKACIP---AAAHQGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 181 ~~~l~~~l~~~g~~~p~~iQ~~~i~---~~l~~~~dvl~~a~TGsGKT~~~~ 229 (465)
...+...+...|+ .+++.+..-+- .++...+-+++.||||||||.++-
T Consensus 874 ~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 874 RKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 4556777778888 56666643221 223457789999999999999864
No 310
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=56.89 E-value=5.5 Score=38.71 Aligned_cols=16 Identities=38% Similarity=0.198 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999654
No 311
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=56.76 E-value=21 Score=39.69 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=63.5
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHH---HHhCC---CcEEEeChHHHHHHHhCCCcccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQER---LLKAR---PELVVGTPGRLWELMSGGEKHLV 335 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~---~~~~~---~dIiV~TP~~L~~~l~~~~~~~~ 335 (465)
+.++||.++++..+..+...|... .++.+..++|+++...... .++.+ ++|||||. . +..| +
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v----~~~G----l 570 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I----GSEG----R 570 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C----TTCS----S
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h----hhcC----C
Confidence 458999999999998888877642 3789999999988654433 33333 89999993 2 3333 7
Q ss_pred ccCceeEEEecchhHhhhcCCHHHHHHHHHhCCC
Q 012337 336 ELHTLSFFVLDEADRMIENGHFRELQSIIDMLPM 369 (465)
Q Consensus 336 ~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~ 369 (465)
++..+.+||+-.++ + ....+.+.+.+..+
T Consensus 571 Dl~~~~~VI~~d~p----~-~~~~~~Q~~GR~~R 599 (968)
T 3dmq_A 571 NFQFASHMVMFDLP----F-NPDLLEQRIGRLDR 599 (968)
T ss_dssp CCTTCCEEECSSCC----S-SHHHHHHHHHTTSC
T ss_pred CcccCcEEEEecCC----C-CHHHHHHHhhcccc
Confidence 78889999876654 3 34455556655554
No 312
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=56.71 E-value=9.3 Score=37.15 Aligned_cols=21 Identities=29% Similarity=0.121 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCChhHHhhH
Q 012337 210 QGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~l 230 (465)
.|.-+++.+++|+|||...+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~ 80 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALH 80 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 467799999999999965433
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=56.49 E-value=6.6 Score=34.45 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.-+++.|+.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4778999999999999764
No 314
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=56.34 E-value=5.4 Score=37.66 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..++++||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 315
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=55.89 E-value=6 Score=39.96 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=16.1
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
++.+|+.||+|+|||....
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999997653
No 316
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=55.86 E-value=5.4 Score=34.25 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+.-+++.|+.|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999753
No 317
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=55.78 E-value=5.4 Score=38.13 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999754
No 318
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.76 E-value=7.9 Score=38.88 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=30.8
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 171 EFDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~---g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
+...|.+++=-..+.+.|... .+..|.-++...+ ...+-+|+.||+|+|||+..
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi----~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI----KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC----CCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC----CCCCCCceECCCCchHHHHH
Confidence 345788886555555444431 1122222222221 23467999999999999764
No 319
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=55.73 E-value=14 Score=45.70 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=32.6
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHH---HHHhcCCcEEEEcCCCCChhHHhh
Q 012337 181 HPLLMKSIYRLGFKEPTPIQKACIP---AAAHQGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 181 ~~~l~~~l~~~g~~~p~~iQ~~~i~---~~l~~~~dvl~~a~TGsGKT~~~~ 229 (465)
...+.+.+...|+ .+++.+..-+- .++...+.|++.||||||||.++-
T Consensus 891 ~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 891 VQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 3456677777887 46666532221 223457889999999999999864
No 320
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=55.57 E-value=8.9 Score=42.60 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=37.6
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHHHHHccCCc--------eEEEEecCCCHHHHHHH---Hh--CCCcEEEeChHHHHHH
Q 012337 260 KGHLRALIITPTRELALQVTDHLKEVAKGINV--------RVVPIVGGMSTEKQERL---LK--ARPELVVGTPGRLWEL 326 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~--------~v~~~~gg~~~~~~~~~---~~--~~~dIiV~TP~~L~~~ 326 (465)
..+.++||.++|+..+..+.+.|.......++ ....++|+++...+... ++ +..+|||||- +
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~ 703 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V 703 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----c
Confidence 34578999999999999999999875221223 33344566665443332 22 3568999994 2
Q ss_pred HhCCCccccccCceeEEEe
Q 012337 327 MSGGEKHLVELHTLSFFVL 345 (465)
Q Consensus 327 l~~~~~~~~~l~~i~~lVi 345 (465)
+..| +++..+.+||+
T Consensus 704 ~~eG----IDlp~v~~VI~ 718 (936)
T 4a2w_A 704 ADEG----IDIVQCNLVVL 718 (936)
T ss_dssp ----------CCCCSEEEE
T ss_pred hhcC----CcchhCCEEEE
Confidence 3332 55666766664
No 321
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=55.44 E-value=2.5 Score=43.44 Aligned_cols=71 Identities=11% Similarity=0.275 Sum_probs=45.3
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHH----HHHHhCCCcEEEeChHHHHHHHhCCCcccccc
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ----ERLLKARPELVVGTPGRLWELMSGGEKHLVEL 337 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~----~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l 337 (465)
+.++||.++++.-|..++..|.. .++.+..++|+.....+ .....+..+|||||. ++..| +++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~~G----iDi 423 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIARG----IDV 423 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC--------------CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhhcC----CCc
Confidence 45799999999999888887765 36778888888765322 122235678999996 44444 778
Q ss_pred CceeEEEe
Q 012337 338 HTLSFFVL 345 (465)
Q Consensus 338 ~~i~~lVi 345 (465)
..+.+||.
T Consensus 424 p~v~~VI~ 431 (508)
T 3fho_A 424 SQVNLVVN 431 (508)
T ss_dssp TTCCEEEC
T ss_pred cCCCEEEE
Confidence 88888885
No 322
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=55.37 E-value=7.5 Score=38.00 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
.|.-+++.+|+|+|||.. ++.++..+
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHH
Confidence 466789999999999954 44444443
No 323
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.33 E-value=6.8 Score=39.72 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=33.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-HhcCCcEEEEcCCCCChhHHh
Q 012337 171 EFDAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 171 ~~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~-~~i~~~-l~~~~dvl~~a~TGsGKT~~~ 228 (465)
+-..|.+.+--..+.+.|.+.= -.|+.. +.+..+ +...+.+|+.||+|+|||+..
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V---~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVV---ELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHH---HHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 3467888887777766665531 112211 112111 123568999999999999754
No 324
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=55.29 E-value=6.4 Score=33.10 Aligned_cols=17 Identities=18% Similarity=-0.111 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChhHHhh
Q 012337 213 DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~ 229 (465)
-+++.|+.|||||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 325
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=55.14 E-value=7.3 Score=34.65 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHhhH
Q 012337 213 DIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~l 230 (465)
-.++.|+.|||||+....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468999999999986433
No 326
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=55.00 E-value=6 Score=34.86 Aligned_cols=21 Identities=24% Similarity=-0.076 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCChhHHhhH
Q 012337 210 QGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~l 230 (465)
.|.-+++.|++|+|||.....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 466789999999999976443
No 327
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=54.71 E-value=30 Score=32.61 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCChhHHhhH
Q 012337 211 GKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~l 230 (465)
+.-+++.+++|+|||.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34577889999999976443
No 328
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=54.59 E-value=6.3 Score=33.55 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+..++++|+.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 567899999999999764
No 329
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=54.37 E-value=5.9 Score=39.46 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=16.6
Q ss_pred hhHhhhcCCHHHHHHHHHhC
Q 012337 348 ADRMIENGHFRELQSIIDML 367 (465)
Q Consensus 348 ah~ll~~~~~~~l~~i~~~l 367 (465)
+|.|++.|+.+++..++...
T Consensus 209 vd~Ml~~GlleEv~~L~~~~ 228 (409)
T 3eph_A 209 VDDMLERGALQEIKQLYEYY 228 (409)
T ss_dssp HHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHHhc
Confidence 45588999999999999863
No 330
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=54.26 E-value=7.3 Score=48.14 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 202 ACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 202 ~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
..+..++..++.+|++||||+|||...
T Consensus 1258 ~ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1258 KIFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 344555668999999999999999754
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=54.24 E-value=5.4 Score=34.29 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.|..+++.|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999997643
No 332
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=54.07 E-value=6.6 Score=35.82 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
+.+++.||+|+|||...
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999653
No 333
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=54.05 E-value=6.9 Score=38.06 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
..+.+++.||+|+|||+..
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3568999999999999764
No 334
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=53.74 E-value=6.4 Score=36.94 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..+++.||+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 46999999999999764
No 335
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=53.34 E-value=27 Score=38.02 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=37.7
Q ss_pred EEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHh--CCCcEEEeCh
Q 012337 264 RALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLK--ARPELVVGTP 320 (465)
Q Consensus 264 ~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~--~~~dIiV~TP 320 (465)
.+||.+.|++-+..+...|... |+.+.+++|+........... ....|+|||.
T Consensus 434 pvLVft~s~~~se~Ls~~L~~~----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 434 PVLVGTVAVETSELISKLLKNK----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp CEEEEESCHHHHHHHHHHHHTT----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred cEEEEECCHHHHHHHHHHHHHC----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC
Confidence 4999999999998888877654 788889999865433322111 1357888884
No 336
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=52.48 E-value=6.6 Score=35.31 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=12.7
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+.+.||+|||||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999764
No 337
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=51.77 E-value=52 Score=30.38 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=48.0
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHH---hC--CCc-EEEeChHHHHHHHhCCCccccc
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLL---KA--RPE-LVVGTPGRLWELMSGGEKHLVE 336 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~---~~--~~d-IiV~TP~~L~~~l~~~~~~~~~ 336 (465)
-++||.+.++..+..+...|.... ++.+..++|+++.......+ .. .+. +|++|- . ... .++
T Consensus 113 ~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-~----~g~----Gln 180 (271)
T 1z5z_A 113 DKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-A----GGF----GIN 180 (271)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC-T----TCC----CCC
T ss_pred CeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh-h----hcC----CcC
Confidence 479999999999888888887632 66788899999875544332 32 345 455553 2 122 266
Q ss_pred cCceeEEEec
Q 012337 337 LHTLSFFVLD 346 (465)
Q Consensus 337 l~~i~~lViD 346 (465)
+..+.+||+=
T Consensus 181 l~~a~~VI~~ 190 (271)
T 1z5z_A 181 LTSANRVIHF 190 (271)
T ss_dssp CTTCSEEEEC
T ss_pred cccCCEEEEE
Confidence 7777777653
No 338
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=51.74 E-value=6.6 Score=32.99 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=12.8
Q ss_pred cEEEEcCCCCChhHH
Q 012337 213 DIIGAAETGSGKTLA 227 (465)
Q Consensus 213 dvl~~a~TGsGKT~~ 227 (465)
-.++.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357889999999976
No 339
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=51.63 E-value=4.3 Score=37.38 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
...+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999764
No 340
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.50 E-value=6.3 Score=39.61 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=29.1
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 172 FDAWNELRLHPLLMKSIYRL---GFKEPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~---g~~~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
-..|.+.+--..+.+.|... .+..|.-++... +...+-+|+.||+|+|||+..
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g----~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG----IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC----CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC----CCCCceEEEECCCCCCHHHHH
Confidence 35688876555555554431 011111111111 123457999999999999764
No 341
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=51.49 E-value=10 Score=32.67 Aligned_cols=19 Identities=32% Similarity=0.240 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.-++++|+.|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999764
No 342
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=51.45 E-value=11 Score=39.39 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.1
Q ss_pred HHHhcCCcEEEEcCCCCChhHHh
Q 012337 206 AAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 206 ~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
..+..+..+++.||+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34457899999999999999664
No 343
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=51.41 E-value=27 Score=36.17 Aligned_cols=93 Identities=13% Similarity=0.178 Sum_probs=56.6
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHcc----CCceEEEEecCCCH--HHHHHHHhC-CCc---EEEeChHHHHHHHhCCC
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKG----INVRVVPIVGGMST--EKQERLLKA-RPE---LVVGTPGRLWELMSGGE 331 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~----~~~~v~~~~gg~~~--~~~~~~~~~-~~d---IiV~TP~~L~~~l~~~~ 331 (465)
+.++||.++++.-|..+++.|...... .+-.+..++|.... ......++. ..+ |+|||. ++..|
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~~G- 512 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLTTG- 512 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTTTT-
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhhcC-
Confidence 468999999999999999999876421 12235666777643 112233333 223 777763 33333
Q ss_pred ccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 332 KHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 332 ~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+++..+.+||++..- .....+.+.+.+..
T Consensus 513 ---iDip~v~~Vi~~~~~-----~s~~~~~Q~iGR~~ 541 (590)
T 3h1t_A 513 ---VDAPTCKNVVLARVV-----NSMSEFKQIVGRGT 541 (590)
T ss_dssp ---CCCTTEEEEEEESCC-----CCHHHHHHHHTTSC
T ss_pred ---ccchheeEEEEEecC-----CChHHHHHHHhhhc
Confidence 778999999986442 23344445554444
No 344
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=51.19 E-value=31 Score=34.48 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCChhHHhhH
Q 012337 212 KDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~l 230 (465)
+.+++++++|+|||....-
T Consensus 101 ~vI~ivG~~GvGKTT~a~~ 119 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGK 119 (433)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3577889999999977543
No 345
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=51.06 E-value=4.6 Score=35.60 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=20.6
Q ss_pred cCceeEEEecchhHh--hhcCCHHHHHHHHH
Q 012337 337 LHTLSFFVLDEADRM--IENGHFRELQSIID 365 (465)
Q Consensus 337 l~~i~~lViDEah~l--l~~~~~~~l~~i~~ 365 (465)
+....+|||||+..+ .+..++..+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 466789999998776 44456666666664
No 346
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=51.02 E-value=6.4 Score=37.09 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
.-++++|++|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999764
No 347
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=51.01 E-value=8.3 Score=33.26 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCChhHHhh
Q 012337 212 KDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~ 229 (465)
.-+++.||+|||||...-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 357889999999997643
No 348
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=50.97 E-value=7.8 Score=33.96 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
..+..+...+. ...|.-+++.|++|||||...
T Consensus 11 ~~~~~~~~~~~--~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 11 SVEKVDRQRLL--DQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCCHHHHHHHH--TSCCEEEEEECSTTSSHHHHH
T ss_pred ccCHHHHHHhc--CCCCeEEEEECCCCCCHHHHH
Confidence 34555554432 235778899999999999764
No 349
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=50.97 E-value=6.3 Score=38.61 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.8
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-++++||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999775
No 350
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=50.92 E-value=8.2 Score=33.76 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
.-++++|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999764
No 351
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=50.91 E-value=9.8 Score=34.03 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCChhHHhhHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPI 232 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpi 232 (465)
.|.-+++.||+|+|||......+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 56788999999999997654433
No 352
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=50.81 E-value=58 Score=33.21 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHHhh
Q 012337 209 HQGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~ 229 (465)
..|.-+++.+++|+|||....
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~ 299 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVS 299 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHH
Confidence 356778999999999996543
No 353
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=50.71 E-value=8.6 Score=32.90 Aligned_cols=16 Identities=25% Similarity=0.040 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-.++.|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5688999999999764
No 354
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=50.60 E-value=6.1 Score=35.12 Aligned_cols=21 Identities=29% Similarity=0.047 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCCChhHHhh
Q 012337 209 HQGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~ 229 (465)
..|.-+.+.||+|+|||....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 356678999999999996543
No 355
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=49.92 E-value=11 Score=32.71 Aligned_cols=16 Identities=38% Similarity=0.254 Sum_probs=13.1
Q ss_pred CcEEEEcCCCCChhHH
Q 012337 212 KDIIGAAETGSGKTLA 227 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~ 227 (465)
.-+++.|++|||||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3578899999999954
No 356
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=49.62 E-value=8.4 Score=34.03 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCChhHH
Q 012337 210 QGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~ 227 (465)
.|.-+.+.||+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999965
No 357
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=49.52 E-value=14 Score=35.58 Aligned_cols=23 Identities=17% Similarity=-0.110 Sum_probs=16.5
Q ss_pred cEEEEcCCCCChhHHhhHHHHHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
-+++.+|.|+|||...+ .++..+
T Consensus 30 iteI~G~pGsGKTtL~L-q~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGL-TMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHH-HHHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Confidence 58999999999996544 444333
No 358
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=49.45 E-value=9.8 Score=35.61 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCChhHHhh
Q 012337 209 HQGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~ 229 (465)
..|.-+++.|++|+|||....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 467789999999999996543
No 359
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=49.26 E-value=6.8 Score=35.74 Aligned_cols=32 Identities=6% Similarity=0.177 Sum_probs=24.5
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-.+|++||--.-+|......+..++..+.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45567899999988888777777777776664
No 360
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=49.01 E-value=8.8 Score=35.61 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
+.+++.||+|+|||...
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999653
No 361
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=48.85 E-value=16 Score=41.18 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=49.6
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeC---hHHHHHHHhCCCccccccC
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGT---PGRLWELMSGGEKHLVELH 338 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~T---P~~L~~~l~~~~~~~~~l~ 338 (465)
+.++||.|+|+..|..++..|... +.+..++|+.... ......+..+||||| .. ++..| +++.
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lhg~~~~~-l~~F~~G~~~VLVaTas~Td----v~~rG----IDip 340 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKKGD-YEKFVEGEIDHLIGTAHYYG----TLVRG----LDLP 340 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSSHH-HHHHHHTSCSEEEEECC----------CC----SCCT
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEeccHHHH-HHHHHcCCCcEEEEecCCCC----eeEec----cccC
Confidence 457999999999988888777543 7888999988532 223334678999994 22 33333 7788
Q ss_pred c-eeEEEecchh
Q 012337 339 T-LSFFVLDEAD 349 (465)
Q Consensus 339 ~-i~~lViDEah 349 (465)
. +.+||.=.+-
T Consensus 341 ~VI~~VI~~~~P 352 (1054)
T 1gku_B 341 ERIRFAVFVGCP 352 (1054)
T ss_dssp TTCCEEEEESCC
T ss_pred CcccEEEEeCCC
Confidence 8 4887754444
No 362
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=48.79 E-value=1.2e+02 Score=29.36 Aligned_cols=87 Identities=8% Similarity=0.172 Sum_probs=52.6
Q ss_pred HHHHHHhcCCcEEEEcCCCC-ChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCC-eEEEEEcccHHHHHHHHH
Q 012337 203 CIPAAAHQGKDIIGAAETGS-GKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGH-LRALIITPTRELALQVTD 280 (465)
Q Consensus 203 ~i~~~l~~~~dvl~~a~TGs-GKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vLil~Ptr~La~Qv~~ 280 (465)
.+...+ .++.++|.|.||+ |..++- .+.. .+ -.++++.-...-..++..
T Consensus 28 ~~~~~~-~~k~vLVTGatG~IG~~l~~------~L~~----------------------~g~~~V~~~~r~~~~~~~~~~ 78 (399)
T 3nzo_A 28 ELQSVV-SQSRFLVLGGAGSIGQAVTK------EIFK----------------------RNPQKLHVVDISENNMVELVR 78 (399)
T ss_dssp HHHHHH-HTCEEEEETTTSHHHHHHHH------HHHT----------------------TCCSEEEEECSCHHHHHHHHH
T ss_pred HHHHHh-CCCEEEEEcCChHHHHHHHH------HHHH----------------------CCCCEEEEEECCcchHHHHHH
Confidence 344455 5889999998886 765443 2321 12 256666666665666666
Q ss_pred HHHHHHccCCceEEEEecCCCHHHHHHHHh--CCCcEEEe
Q 012337 281 HLKEVAKGINVRVVPIVGGMSTEKQERLLK--ARPELVVG 318 (465)
Q Consensus 281 ~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~--~~~dIiV~ 318 (465)
.+.......+..+..+.++.........+. .++|+||-
T Consensus 79 ~l~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vih 118 (399)
T 3nzo_A 79 DIRSSFGYINGDFQTFALDIGSIEYDAFIKADGQYDYVLN 118 (399)
T ss_dssp HHHHHTCCCSSEEEEECCCTTSHHHHHHHHHCCCCSEEEE
T ss_pred HHHHhcCCCCCcEEEEEEeCCCHHHHHHHHHhCCCCEEEE
Confidence 666554433456777777776554433333 57899884
No 363
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=48.73 E-value=12 Score=37.59 Aligned_cols=17 Identities=29% Similarity=0.301 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..++++||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999764
No 364
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=48.62 E-value=9.2 Score=38.46 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=29.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHH-HHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 172 FDAWNELRLHPLLMKSIYRLGFKEPTPIQKA-CIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 172 ~~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~~-~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
...|.++.-...+.+.|...-. .|+... .+.......+.+|+.||+|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3567777666666665543210 011100 00001123468999999999999764
No 365
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=48.60 E-value=5.5 Score=35.46 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=11.1
Q ss_pred eeEEEecchhHhh
Q 012337 340 LSFFVLDEADRMI 352 (465)
Q Consensus 340 i~~lViDEah~ll 352 (465)
-.+|||||||.++
T Consensus 88 ~~vliIDEAq~l~ 100 (199)
T 2r2a_A 88 GSIVIVDEAQDVW 100 (199)
T ss_dssp TCEEEETTGGGTS
T ss_pred ceEEEEEChhhhc
Confidence 4589999999985
No 366
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=48.53 E-value=12 Score=34.89 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999653
No 367
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=48.48 E-value=7.2 Score=33.98 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999764
No 368
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=48.27 E-value=10 Score=31.93 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
-+++++.|+.|||||.+.-
T Consensus 7 ~~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp -CEEEEESCTTSSHHHHHH
T ss_pred cceEEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 369
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=48.08 E-value=9.4 Score=32.80 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+.-++++|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 370
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=47.95 E-value=9.9 Score=32.94 Aligned_cols=16 Identities=44% Similarity=0.507 Sum_probs=13.3
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+.+.||+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 371
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=47.87 E-value=9.9 Score=32.60 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999997643
No 372
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=47.80 E-value=10 Score=33.60 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+..+.+.|++|||||...-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999997643
No 373
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=47.79 E-value=13 Score=40.29 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=36.7
Q ss_pred CCeEEEEEcccHHHHHHHHHHHHHHHcc--------CCceEEEEecCCCHHHHHHH---Hh--CCCcEEEeChHHHHHHH
Q 012337 261 GHLRALIITPTRELALQVTDHLKEVAKG--------INVRVVPIVGGMSTEKQERL---LK--ARPELVVGTPGRLWELM 327 (465)
Q Consensus 261 ~~~~vLil~Ptr~La~Qv~~~l~~l~~~--------~~~~v~~~~gg~~~~~~~~~---~~--~~~dIiV~TP~~L~~~l 327 (465)
.+.++||.++++..+..+.+.|...... .|.....++|+++...+... ++ +..+|||||- ++
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~ 704 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----ch
Confidence 3568999999999999999988764211 13333444566655443332 22 3578999995 23
Q ss_pred hCCCccccccCceeEEEe
Q 012337 328 SGGEKHLVELHTLSFFVL 345 (465)
Q Consensus 328 ~~~~~~~~~l~~i~~lVi 345 (465)
..| +++..+.+||.
T Consensus 705 ~~G----IDlp~v~~VI~ 718 (797)
T 4a2q_A 705 DEG----IDIVQCNLVVL 718 (797)
T ss_dssp ----------CCCSEEEE
T ss_pred hcC----CCchhCCEEEE
Confidence 333 77888988886
No 374
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=47.72 E-value=11 Score=42.80 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=28.0
Q ss_pred EEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEEEcccHHHHHHHHHHHH
Q 012337 215 IGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALIITPTRELALQVTDHLK 283 (465)
Q Consensus 215 l~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLil~Ptr~La~Qv~~~l~ 283 (465)
+|.|..|||||.+.+-=+...+ .. +..+.++|+|||... ..++...+.
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll-~~-------------------~~~~~~il~lVP~q~-TFt~~~rl~ 52 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDEL-RR-------------------APFGKPIIFLVPDQM-TFLMEYELA 52 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHH-HH-------------------CTTSSCEEEECCGGG-HHHHHHHHT
T ss_pred EEEeCCCCChHHHHHHHHHHHH-Hh-------------------CCCCCcEEEEecCcc-cHHHHHHHH
Confidence 6788999999977444343333 21 112357888888653 333444443
No 375
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=47.68 E-value=10 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHHhcCCcEEEEcCCCCChhHHh
Q 012337 196 PTPIQKACIPAAAHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 196 p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~~ 228 (465)
.++.++... .+ ..+.-+++.|+.|||||...
T Consensus 12 ~~~~~r~~~-~~-~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTEL-RN-QRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHHH-HT-SSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhcc-cC-CCCCEEEEECCCCCCHHHHH
Confidence 456666664 22 46778999999999999754
No 376
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=47.52 E-value=14 Score=41.81 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=51.0
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHHccCCceEE-EEecCCCHHHHHHHHhCCCcEEEeChHHHHHHHhCCCccccccCc-e
Q 012337 263 LRALIITPTRELALQVTDHLKEVAKGINVRVV-PIVGGMSTEKQERLLKARPELVVGTPGRLWELMSGGEKHLVELHT-L 340 (465)
Q Consensus 263 ~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~-~~~gg~~~~~~~~~~~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~-i 340 (465)
.++||.+|++.-|..++..|... ++.+. .++|. .........+..+|||||... .+++..| +++.. |
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~----g~~~~~~lhg~--rr~l~~F~~G~~~VLVatas~-TdvlarG----IDip~~V 378 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF--EKNFEDFKVGKINILIGVQAY-YGKLTRG----VDLPERI 378 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHT----TCCEEESSSSH--HHHHHHHHHTSCSEEEEETTT-HHHHCCS----CCCTTTC
T ss_pred CCEEEEECcHHHHHHHHHHHHhC----CCCeeeEecCc--HHHHHHHHCCCCCEEEEecCC-CCeeEec----CcCCCCC
Confidence 57999999999999999888775 67777 77773 222222233568999993110 1345554 77888 8
Q ss_pred eEEEecchh
Q 012337 341 SFFVLDEAD 349 (465)
Q Consensus 341 ~~lViDEah 349 (465)
.+||.=.+-
T Consensus 379 ~~VI~~d~P 387 (1104)
T 4ddu_A 379 KYVIFWGTP 387 (1104)
T ss_dssp CEEEEESCC
T ss_pred CEEEEECCC
Confidence 888764444
No 377
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=47.43 E-value=9.4 Score=36.44 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+.+.||+|||||...
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 46888999999999999653
No 378
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=47.31 E-value=9.7 Score=35.52 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=25.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH-HhcCCcEEEEcCCCCChhHHh
Q 012337 173 DAWNELRLHPLLMKSIYRLGFKEPTPIQK-ACIPAA-AHQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 173 ~~~~~l~l~~~l~~~l~~~g~~~p~~iQ~-~~i~~~-l~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.+++-...+.+.+...- ..|+.. .++..+ +.-.+.+++.||+|+|||+..
T Consensus 7 ~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 56777776666666555421 122221 122111 111234999999999999654
No 379
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=47.11 E-value=13 Score=32.13 Aligned_cols=15 Identities=27% Similarity=-0.026 Sum_probs=12.5
Q ss_pred cEEEEcCCCCChhHH
Q 012337 213 DIIGAAETGSGKTLA 227 (465)
Q Consensus 213 dvl~~a~TGsGKT~~ 227 (465)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999964
No 380
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=47.10 E-value=12 Score=32.91 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
|.-+.+.+++|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 346789999999999764
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=47.05 E-value=11 Score=33.80 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
....+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3567999999999999764
No 382
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=46.89 E-value=29 Score=38.73 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=33.6
Q ss_pred ccccCCC-CHHHHHHHHHCCCC----CCcHHHHHHHHHHHhc--CCcEEEEcCCCCChhHHhh
Q 012337 174 AWNELRL-HPLLMKSIYRLGFK----EPTPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 174 ~~~~l~l-~~~l~~~l~~~g~~----~p~~iQ~~~i~~~l~~--~~dvl~~a~TGsGKT~~~~ 229 (465)
.|..+++ .+.++......... .++.+=..|+..++.. .+.||+.|.+|+|||.+.-
T Consensus 128 Pyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K 190 (1010)
T 1g8x_A 128 PFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (1010)
T ss_dssp CSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHH
T ss_pred CCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHH
Confidence 3444554 45555555433222 2234555666666543 4569999999999998743
No 383
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=46.85 E-value=39 Score=39.02 Aligned_cols=120 Identities=20% Similarity=0.254 Sum_probs=0.0
Q ss_pred HhcCCcEEEEcCCCCChhHHhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCCeEEEE--------------------
Q 012337 208 AHQGKDIIGAAETGSGKTLAFGLPIMQRLLEEREKAGKMLEEKGEEAEKYAPKGHLRALI-------------------- 267 (465)
Q Consensus 208 l~~~~dvl~~a~TGsGKT~~~~lpil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLi-------------------- 267 (465)
+..|+-+.++||+|||||...-+-+ +.-......+.|
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~-----------------------~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v 497 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLL-----------------------RYYDVLKGKITIDGVDVRDINLEFLRKNVAVV 497 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHT-----------------------TSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhc-----------------------cccccccCcccCCCccchhccHHHHhhccccc
Q ss_pred -------------------EcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHHHHHHhCCCcEEEeChH-------
Q 012337 268 -------------------ITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQERLLKARPELVVGTPG------- 321 (465)
Q Consensus 268 -------------------l~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~dIiV~TP~------- 321 (465)
--.+.+-+.++++.+.-. ++...+..+.+=.|+--|
T Consensus 498 ~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~------------------~~i~~lp~G~~T~vGe~G~~LSGGQ 559 (1321)
T 4f4c_A 498 SQEPALFNCTIEENISLGKEGITREEMVAACKMANAE------------------KFIKTLPNGYNTLVGDRGTQLSGGQ 559 (1321)
T ss_dssp CSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH------------------HHHHHSTTTTSSEESSSSCCCCHHH
T ss_pred CCcceeeCCchhHHHhhhcccchHHHHHHHHHHccch------------------hHHHcCCCCCccEecCCCCCCCHHH
Q ss_pred ----HHHHHHhCCCccccccCceeEEEecchhHhhhcCCHHHHHHHHHhCCCCCCCCCCCcccccchhccccccCCCceE
Q 012337 322 ----RLWELMSGGEKHLVELHTLSFFVLDEADRMIENGHFRELQSIIDMLPMTNGSNEGQSEQTQTCVTVSSLQRKKRQT 397 (465)
Q Consensus 322 ----~L~~~l~~~~~~~~~l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 397 (465)
.|-+.+ +++-.++|+||+=.-+|......+...+..+. +.+-+
T Consensus 560 kQRiaiARAl---------~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~------------------------~~~T~ 606 (1321)
T 4f4c_A 560 KQRIAIARAL---------VRNPKILLLDEATSALDAESEGIVQQALDKAA------------------------KGRTT 606 (1321)
T ss_dssp HHHHHHHHHH---------TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH------------------------TTSEE
T ss_pred HHHHHHHHHH---------ccCCCEEEEecccccCCHHHHHHHHHHHHHHh------------------------CCCEE
Q ss_pred EEEe
Q 012337 398 LVFS 401 (465)
Q Consensus 398 i~~S 401 (465)
|+.+
T Consensus 607 iiia 610 (1321)
T 4f4c_A 607 IIIA 610 (1321)
T ss_dssp EEEC
T ss_pred EEEc
No 384
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=46.52 E-value=12 Score=40.31 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=18.7
Q ss_pred HHHHHHhcCCc--EEEEcCCCCChhHHh
Q 012337 203 CIPAAAHQGKD--IIGAAETGSGKTLAF 228 (465)
Q Consensus 203 ~i~~~l~~~~d--vl~~a~TGsGKT~~~ 228 (465)
++..++ +|.| |+..|.||||||++.
T Consensus 454 ~v~~~~-~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSL-DGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHH-TTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHh-CCceEEEEccCCCCCchhhcc
Confidence 566676 5765 566689999999874
No 385
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=46.40 E-value=12 Score=34.02 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.-+++.|++|||||...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567999999999999764
No 386
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.29 E-value=10 Score=47.50 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCcEEEEcCCCCChhHH
Q 012337 201 KACIPAAAHQGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 201 ~~~i~~~l~~~~dvl~~a~TGsGKT~~ 227 (465)
...+..++..++.|+++||||+|||..
T Consensus 1294 ~~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1294 VDVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 345556667899999999999999953
No 387
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=46.17 E-value=16 Score=33.17 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=16.5
Q ss_pred cEEEEcCCCCChhHHhhHHHH
Q 012337 213 DIIGAAETGSGKTLAFGLPIM 233 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~lpil 233 (465)
++++.++.|+|||...+--+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 689999999999987554443
No 388
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=46.09 E-value=9.8 Score=33.40 Aligned_cols=19 Identities=37% Similarity=0.064 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.-+.+.|++|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3456788999999999753
No 389
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=46.08 E-value=7.9 Score=37.85 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
=.++.|+||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3688999999999874
No 390
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=46.06 E-value=11 Score=33.26 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.1
Q ss_pred cEEEEcCCCCChhHHhh
Q 012337 213 DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~ 229 (465)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997643
No 391
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=45.67 E-value=13 Score=35.14 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCChhHHhhH
Q 012337 210 QGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~l 230 (465)
.+.-+++.|++|+|||.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466789999999999976543
No 392
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=45.64 E-value=11 Score=32.27 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=13.8
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999764
No 393
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=45.44 E-value=11 Score=32.29 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 394
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=45.44 E-value=12 Score=31.71 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.++.|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999764
No 395
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.30 E-value=11 Score=38.68 Aligned_cols=19 Identities=26% Similarity=0.123 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
.+.++++||+|+|||.+..
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3689999999999997643
No 396
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=44.75 E-value=14 Score=31.63 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..++++|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999764
No 397
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=44.49 E-value=11 Score=32.30 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.+.-++++|+.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35578999999999997643
No 398
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=44.41 E-value=13 Score=32.90 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+..+++.|+.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567899999999999764
No 399
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=44.38 E-value=53 Score=33.52 Aligned_cols=18 Identities=33% Similarity=0.263 Sum_probs=14.5
Q ss_pred cEEEEcCCCCChhHHhhH
Q 012337 213 DIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~l 230 (465)
.+++++++|+|||..+.-
T Consensus 103 vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578889999999976543
No 400
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=44.37 E-value=12 Score=33.02 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.1
Q ss_pred cEEEEcCCCCChhHHhh
Q 012337 213 DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~ 229 (465)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 401
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=44.32 E-value=13 Score=34.16 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.+..+++.|++|||||...-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 38999999999999997743
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=44.18 E-value=12 Score=32.00 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.|.-+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667889999999999753
No 403
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=44.01 E-value=13 Score=32.95 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
...+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999997643
No 404
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=43.87 E-value=13 Score=31.34 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
..+++.|+.|||||.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999764
No 405
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=43.56 E-value=18 Score=34.14 Aligned_cols=28 Identities=7% Similarity=-0.077 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCChhHH
Q 012337 200 QKACIPAAAHQGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 200 Q~~~i~~~l~~~~dvl~~a~TGsGKT~~ 227 (465)
+...+..++..+..+++.|+.|+|||..
T Consensus 20 el~~L~~~l~~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 20 ESRKLEESLENYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCHHHH
Confidence 3333444444568899999999999964
No 406
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=43.03 E-value=11 Score=34.45 Aligned_cols=28 Identities=4% Similarity=0.157 Sum_probs=19.4
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHH
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSII 364 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~ 364 (465)
+.+-+++++||.-.-+|......+..++
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 3456799999999888765555555444
No 407
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=42.86 E-value=11 Score=34.55 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=16.7
Q ss_pred hcCCcEEEEcCCCCChhHHhh
Q 012337 209 HQGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~ 229 (465)
..+.-+.+.||+|||||...-
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 346678999999999997643
No 408
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=42.79 E-value=13 Score=32.31 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
.-++++|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999764
No 409
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=42.56 E-value=10 Score=34.85 Aligned_cols=18 Identities=28% Similarity=0.050 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+.-++++|+.|||||...
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 446899999999999764
No 410
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.50 E-value=13 Score=37.52 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
...++|+.||+|+|||...
T Consensus 200 ~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3458999999999999764
No 411
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=42.44 E-value=12 Score=32.76 Aligned_cols=19 Identities=32% Similarity=0.013 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.-+.+.|++|||||...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999754
No 412
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=42.34 E-value=65 Score=36.09 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.7
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHH
Q 012337 262 HLRALIITPTRELALQVTDHLKEVA 286 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~ 286 (465)
+.++||+|+++.-|..++..|..+.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhh
Confidence 4589999999999999999999876
No 413
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=42.30 E-value=13 Score=32.04 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=13.4
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999754
No 414
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=42.05 E-value=14 Score=35.08 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+.-+.+.||+|||||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 567888999999999764
No 415
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=42.00 E-value=15 Score=31.88 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+..++++|+.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999764
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=41.85 E-value=15 Score=32.94 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.+..+++.|+.|||||...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35679999999999997643
No 417
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=41.80 E-value=13 Score=32.33 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999764
No 418
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=41.58 E-value=12 Score=33.66 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=26.5
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-+++++||--.-+|......+..++..+.
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 46678999999999999888888888886653
No 419
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=41.58 E-value=9.7 Score=34.35 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=24.3
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-+++++||--.-+|......+..++..+.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~ 187 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 45667999999988887777777777776653
No 420
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=41.33 E-value=10 Score=32.21 Aligned_cols=19 Identities=26% Similarity=0.074 Sum_probs=11.7
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5678999999999997643
No 421
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=41.29 E-value=15 Score=36.98 Aligned_cols=18 Identities=39% Similarity=0.386 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
..++++.||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999764
No 422
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=41.19 E-value=10 Score=34.95 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=25.2
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-++|++||--.-+|......+..++..+.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 200 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 35668999999998888777777777776664
No 423
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=41.03 E-value=12 Score=34.69 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=24.4
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.+-.+|++||.-.-+|......+..++..+.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~ 202 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 4557999999998888777777777776664
No 424
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=40.82 E-value=11 Score=34.47 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=24.8
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-++|++||--.-+|......+..++..+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 186 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 45668999999998888777777777776653
No 425
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=40.62 E-value=27 Score=37.34 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHhc--CCcEEEEcCCCCChhHHh
Q 012337 197 TPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~--~~dvl~~a~TGsGKT~~~ 228 (465)
+.+=..|+..++.. .+.+|+.|.+|+|||.+.
T Consensus 78 faiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 78 YALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 34556667666554 456999999999999874
No 426
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=40.56 E-value=11 Score=39.67 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=14.0
Q ss_pred cEEEEcCCCCChhHH
Q 012337 213 DIIGAAETGSGKTLA 227 (465)
Q Consensus 213 dvl~~a~TGsGKT~~ 227 (465)
++|+.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999965
No 427
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=40.53 E-value=12 Score=34.36 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=24.1
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDML 367 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l 367 (465)
+.+-++|++||.-.-+|......+..++..+
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4556799999999888877777777777665
No 428
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=40.52 E-value=12 Score=33.87 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+.+.||+|||||...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 36778899999999999653
No 429
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=40.37 E-value=15 Score=30.65 Aligned_cols=16 Identities=25% Similarity=-0.020 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999764
No 430
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=40.19 E-value=28 Score=39.64 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=33.0
Q ss_pred ccccCCC-CHHHHHHHHHCCCC----CCcHHHHHHHHHHHhc--CCcEEEEcCCCCChhHHh
Q 012337 174 AWNELRL-HPLLMKSIYRLGFK----EPTPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 174 ~~~~l~l-~~~l~~~l~~~g~~----~p~~iQ~~~i~~~l~~--~~dvl~~a~TGsGKT~~~ 228 (465)
.|..++| .+.++......... +++.+=..|+..++.. .+.||+.|.+|+|||.+.
T Consensus 125 P~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 125 PYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred CCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 3444554 44555544332222 2234555677666654 456999999999999874
No 431
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=40.19 E-value=12 Score=35.10 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=24.5
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-++||+||--.-+|......+..++..+.
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 45668999999998888777777777776653
No 432
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=40.16 E-value=15 Score=32.03 Aligned_cols=16 Identities=31% Similarity=0.144 Sum_probs=13.4
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999764
No 433
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=40.10 E-value=11 Score=34.88 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=24.8
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-++|++||--.-+|......+..++..+.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 35568999999998888777777777776653
No 434
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=40.03 E-value=14 Score=34.36 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=25.3
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.+-++|++||--.-+|......+..++..+.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 4557999999998888877888888887764
No 435
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=39.98 E-value=14 Score=35.12 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.|.-+.+.||+|+|||....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34567899999999997643
No 436
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=39.89 E-value=15 Score=32.02 Aligned_cols=18 Identities=33% Similarity=0.228 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+.-+++.|+.|||||...
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 556899999999999764
No 437
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=39.83 E-value=16 Score=31.78 Aligned_cols=19 Identities=32% Similarity=0.258 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4667999999999999764
No 438
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=39.74 E-value=13 Score=32.04 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.4
Q ss_pred EEEEcCCCCChhHHhh
Q 012337 214 IIGAAETGSGKTLAFG 229 (465)
Q Consensus 214 vl~~a~TGsGKT~~~~ 229 (465)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997643
No 439
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=39.73 E-value=14 Score=33.90 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=25.5
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.+-++|++||.-.-+|......+..++..+.
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 4557999999999898888888888887764
No 440
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=39.72 E-value=17 Score=32.15 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.3
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-.++.||+|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4578899999999764
No 441
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=39.59 E-value=15 Score=37.94 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+..+++.||+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999654
No 442
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=39.36 E-value=16 Score=31.21 Aligned_cols=15 Identities=40% Similarity=0.293 Sum_probs=13.0
Q ss_pred EEEEcCCCCChhHHh
Q 012337 214 IIGAAETGSGKTLAF 228 (465)
Q Consensus 214 vl~~a~TGsGKT~~~ 228 (465)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999754
No 443
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=39.34 E-value=14 Score=31.44 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.5
Q ss_pred hcCCcEEEEcCCCCChhHH
Q 012337 209 HQGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~ 227 (465)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4566788999999999954
No 444
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=39.27 E-value=17 Score=37.28 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=21.3
Q ss_pred cCCcEEEEcCCCCChhHHhhHHHHHHHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLPIMQRLL 237 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lpil~~l~ 237 (465)
.|.-+++.+|+|||||....+.++.-++
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5788999999999999776554444443
No 445
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=39.26 E-value=13 Score=37.86 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
+.+++.||+|+|||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999764
No 446
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=38.87 E-value=18 Score=31.60 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.+.-++++|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 56789999999999997643
No 447
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=38.81 E-value=16 Score=32.27 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 448
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=38.73 E-value=13 Score=34.58 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.3
Q ss_pred ceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 339 TLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+-++|++||-=.-+|......+..++..+.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~ 194 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLT 194 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 668999999888777777777777776664
No 449
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=38.73 E-value=11 Score=34.35 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=24.0
Q ss_pred CceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 338 HTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 338 ~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.+-++|++||.-.-+|......+..++..+.
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 186 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSESESMVQKALDSLM 186 (243)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhc
Confidence 4457999999998888887777777776653
No 450
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=38.48 E-value=16 Score=31.96 Aligned_cols=18 Identities=22% Similarity=-0.082 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+.-+.+.|++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445888999999999754
No 451
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=38.40 E-value=18 Score=32.04 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 452
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=38.39 E-value=8.4 Score=33.30 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=13.0
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999664
No 453
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=38.33 E-value=17 Score=32.32 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.7
Q ss_pred cEEEEcCCCCChhHHhh
Q 012337 213 DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~ 229 (465)
.+++.||+||||+...-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999987643
No 454
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=38.31 E-value=12 Score=34.49 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.2
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-++|++||--.-+|......+..++..+.
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLA 175 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45668999999998888877777777776654
No 455
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=38.19 E-value=28 Score=34.86 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCChhHHhhH
Q 012337 212 KDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~~l 230 (465)
..+++++++|+|||....-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999976543
No 456
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=38.15 E-value=13 Score=35.73 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.3
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
=.+++||+|+|||..+
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3578999999999874
No 457
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=38.02 E-value=16 Score=31.50 Aligned_cols=17 Identities=29% Similarity=0.141 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
.-+.+.+++|||||...
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999764
No 458
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=37.99 E-value=21 Score=40.33 Aligned_cols=74 Identities=7% Similarity=0.038 Sum_probs=47.4
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccC-----------------------------------CceEEEEecCCCHHHHH
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGI-----------------------------------NVRVVPIVGGMSTEKQE 306 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~-----------------------------------~~~v~~~~gg~~~~~~~ 306 (465)
+.++||.++++.-|.+++..|..+.-.. ...+..++|+.....+.
T Consensus 441 ~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 441 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 3479999999999999888775432111 11278899999876554
Q ss_pred HHH----hCCCcEEEeChHHHHHHHhCCCccccccCceeEEE
Q 012337 307 RLL----KARPELVVGTPGRLWELMSGGEKHLVELHTLSFFV 344 (465)
Q Consensus 307 ~~~----~~~~dIiV~TP~~L~~~l~~~~~~~~~l~~i~~lV 344 (465)
..+ .+...|||||. .+..| +++..+.+||
T Consensus 521 ~v~~~F~~G~ikVLVAT~-----vla~G----IDiP~v~~VI 553 (1108)
T 3l9o_A 521 VIEILFQEGFLKVLFATE-----TFSIG----LNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHHHTCCCEEEEES-----CCCSC----CCC--CEEEE
T ss_pred HHHHHHhCCCCeEEEECc-----HHhcC----CCCCCceEEE
Confidence 333 35678999985 23332 5666666654
No 459
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=37.63 E-value=14 Score=34.21 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=25.7
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-.+|++||--.-+|......+..++..+.
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 185 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 45678999999999888877778887776664
No 460
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=37.61 E-value=1.5e+02 Score=23.52 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=16.6
Q ss_pred CCCeEEEEEcccHHHHHHHHHHHH
Q 012337 260 KGHLRALIITPTRELALQVTDHLK 283 (465)
Q Consensus 260 ~~~~~vLil~Ptr~La~Qv~~~l~ 283 (465)
...+++||+-........+...|.
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~ 35 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLS 35 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHT
T ss_pred cCCceEEEECCCHHHHHHHHHHhc
Confidence 345689999888777666555554
No 461
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=37.50 E-value=96 Score=27.07 Aligned_cols=62 Identities=10% Similarity=0.121 Sum_probs=37.9
Q ss_pred CeEEEEEcccHHHHHHHHHHHHHHHccCCceEEEEecCCCHHHH-HHHHhCCCcEEEeChHHHHHHHh
Q 012337 262 HLRALIITPTRELALQVTDHLKEVAKGINVRVVPIVGGMSTEKQ-ERLLKARPELVVGTPGRLWELMS 328 (465)
Q Consensus 262 ~~~vLil~Ptr~La~Qv~~~l~~l~~~~~~~v~~~~gg~~~~~~-~~~~~~~~dIiV~TP~~L~~~l~ 328 (465)
+.+.++++|...|...+.+.+..+ +..+....++....-. .+.+..++||||+--+. ..+|.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~----~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgt-a~~lr 66 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEK----NFIPITKTASLTRASKIAFGLQDEVDAIISRGAT-SDYIK 66 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHH----TCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHH-HHHHH
T ss_pred CCcEEEEEccHHHHHHHHHHHhhh----CCceEEEECCHHHHHHHHHHhcCCCeEEEECChH-HHHHH
Confidence 457999999999988666655544 3355556666442211 12225678988875444 55564
No 462
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.49 E-value=14 Score=39.80 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
...++|+.||+|+|||...
T Consensus 200 ~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3558999999999999764
No 463
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=37.47 E-value=15 Score=31.78 Aligned_cols=30 Identities=17% Similarity=0.488 Sum_probs=24.2
Q ss_pred ceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 339 TLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 339 ~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
.-.++|+||.+.-+|......+..++..+.
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~ 115 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESS 115 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhc
Confidence 346899999999988877788887776664
No 464
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=37.30 E-value=18 Score=32.33 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=13.6
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999764
No 465
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=37.09 E-value=15 Score=33.99 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=25.1
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-++|++||--.-+|......+..++..+.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 45668999999998888777777777776653
No 466
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=36.75 E-value=15 Score=33.83 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.1
Q ss_pred EEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 342 FFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 342 ~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+|++||--.-+|......+..++..+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 999999998888777777777776653
No 467
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=36.73 E-value=18 Score=32.83 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
....+++.|+.|||||...-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34579999999999997643
No 468
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=36.72 E-value=15 Score=34.20 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=26.4
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-.+|++||.-.-+|......+..++..+.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 45668999999999888878888888887774
No 469
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=36.69 E-value=15 Score=32.48 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
.-+++.|+.|||||.+.
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 470
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=36.53 E-value=26 Score=39.31 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=34.0
Q ss_pred CHHHHHHHHHCCCC----CCcHHHHHHHHHHHhc--CCcEEEEcCCCCChhHHhhHHHHHHHH
Q 012337 181 HPLLMKSIYRLGFK----EPTPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAFGLPIMQRLL 237 (465)
Q Consensus 181 ~~~l~~~l~~~g~~----~p~~iQ~~~i~~~l~~--~~dvl~~a~TGsGKT~~~~lpil~~l~ 237 (465)
.+.+++........ +++.+-..|+..++.. .+.+|+.|.+|+|||.+.-+ +++++.
T Consensus 108 ~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 108 SSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp SHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 45555554433222 3344556666666543 45799999999999987533 445543
No 471
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=36.38 E-value=10 Score=36.24 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=23.7
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-.+||+||+=.-+|......|..++..+.
T Consensus 206 ~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~ 237 (306)
T 3nh6_A 206 LKAPGIILLDEATSALDTSNERAIQASLAKVC 237 (306)
T ss_dssp HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 34557899999988887777777777776553
No 472
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=36.35 E-value=33 Score=37.20 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHhc--CCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 197 TPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~--~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
+.+=..|+..++.. .+.+|+.|.+|+|||.+.-+ +++++
T Consensus 140 faiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~-i~~yl 180 (795)
T 1w7j_A 140 FAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKY-AMRYF 180 (795)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred hHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHH-HHHHH
Confidence 34556677666543 45699999999999987433 33444
No 473
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=36.19 E-value=13 Score=33.97 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
+..++++|++|||||...
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345899999999999754
No 474
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=36.09 E-value=16 Score=33.98 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=25.1
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-++|++||--.-+|......+..++..+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 206 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 45668999999998888777777777776653
No 475
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=36.02 E-value=19 Score=32.31 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
..+-+++.||+||||+...-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34567889999999987643
No 476
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=35.85 E-value=15 Score=34.34 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=24.2
Q ss_pred cCceeEEEecchhHhhhcCCHHHHHHHHHhCC
Q 012337 337 LHTLSFFVLDEADRMIENGHFRELQSIIDMLP 368 (465)
Q Consensus 337 l~~i~~lViDEah~ll~~~~~~~l~~i~~~l~ 368 (465)
+.+-++|++||-=.-+|......+..++..+.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 208 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLS 208 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 45668999999988887777777777776553
No 477
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=35.84 E-value=33 Score=37.50 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=35.0
Q ss_pred cccCCC-CHHHHHHHHHCCC----CCCcHHHHHHHHHHHhcC--CcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 175 WNELRL-HPLLMKSIYRLGF----KEPTPIQKACIPAAAHQG--KDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 175 ~~~l~l-~~~l~~~l~~~g~----~~p~~iQ~~~i~~~l~~~--~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
|..+++ .+.++........ ++++.+=..|+..++..+ +.+|+.|.+|+|||.+.-+ +++++
T Consensus 126 yk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-i~~yl 193 (837)
T 1kk8_A 126 YRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKK-VIMYL 193 (837)
T ss_dssp SSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred CcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHH-HHHHH
Confidence 444444 4445544433222 123345566776666544 4699999999999987433 33444
No 478
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=35.75 E-value=19 Score=34.63 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=17.0
Q ss_pred cCCcEEEEcCCCCChhHHhhHH
Q 012337 210 QGKDIIGAAETGSGKTLAFGLP 231 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~lp 231 (465)
.+.-+++.||+|+|||...+..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4667899999999999654443
No 479
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=35.64 E-value=25 Score=33.15 Aligned_cols=19 Identities=21% Similarity=-0.011 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.-+.+.|++|||||...
T Consensus 79 ~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCEEEEEEECTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445778899999999654
No 480
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=35.29 E-value=19 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.1
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-+.++|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999654
No 481
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=35.01 E-value=15 Score=31.41 Aligned_cols=17 Identities=24% Similarity=0.220 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCChhHH
Q 012337 211 GKDIIGAAETGSGKTLA 227 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~ 227 (465)
.-.|++.|.+|+|||..
T Consensus 21 ~~ki~v~G~~~~GKSsl 37 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTI 37 (190)
T ss_dssp CEEEEEEECTTSSHHHH
T ss_pred ccEEEEECCCCCCHHHH
Confidence 44799999999999953
No 482
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=34.83 E-value=16 Score=34.05 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=13.8
Q ss_pred cEEEEcCCCCChhHHh
Q 012337 213 DIIGAAETGSGKTLAF 228 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~ 228 (465)
-++++|++|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 483
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=34.49 E-value=19 Score=32.63 Aligned_cols=20 Identities=25% Similarity=0.049 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..+.-+-+.||+|||||...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 34556788899999999764
No 484
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=33.95 E-value=19 Score=35.13 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCChhHHhh
Q 012337 211 GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~~ 229 (465)
+.-+.+.|++|+|||....
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4457899999999997643
No 485
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=33.80 E-value=20 Score=31.24 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.|.-++++|+.|+|||...+
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 47789999999999996543
No 486
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=33.76 E-value=36 Score=37.94 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=32.5
Q ss_pred cccCCC-CHHHHHHHHHCCC----CCCcHHHHHHHHHHHhc--CCcEEEEcCCCCChhHHh
Q 012337 175 WNELRL-HPLLMKSIYRLGF----KEPTPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 175 ~~~l~l-~~~l~~~l~~~g~----~~p~~iQ~~~i~~~l~~--~~dvl~~a~TGsGKT~~~ 228 (465)
|..++| .+.++........ ++++.+=..|+..++.. .+.||+.|.+|+|||.+.
T Consensus 103 yk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 103 YKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp SSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred ccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 444454 4455554433222 12334556677666543 456999999999999874
No 487
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=33.56 E-value=32 Score=37.21 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=35.6
Q ss_pred cccCCC-CHHHHHHHHHCCC----CCCcHHHHHHHHHHHhc--CCcEEEEcCCCCChhHHhhHHHHHHH
Q 012337 175 WNELRL-HPLLMKSIYRLGF----KEPTPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAFGLPIMQRL 236 (465)
Q Consensus 175 ~~~l~l-~~~l~~~l~~~g~----~~p~~iQ~~~i~~~l~~--~~dvl~~a~TGsGKT~~~~lpil~~l 236 (465)
|..|+| .+.++........ ++.+.+=..|+..++.. .+.+|+.|.+|+|||.+.-+ +++++
T Consensus 128 yk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~-im~yl 195 (783)
T 4db1_A 128 YKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKR-VIQYF 195 (783)
T ss_dssp SSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred CccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHH-HHHhh
Confidence 444554 3445544432221 13345556677666543 45699999999999987533 33444
No 488
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=33.26 E-value=19 Score=39.24 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+..++++||+|+|||+..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999754
No 489
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=33.24 E-value=83 Score=28.34 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=20.0
Q ss_pred ChHHHHHHHhCCCccccccCceeEEEecch
Q 012337 319 TPGRLWELMSGGEKHLVELHTLSFFVLDEA 348 (465)
Q Consensus 319 TP~~L~~~l~~~~~~~~~l~~i~~lViDEa 348 (465)
||..+...|... .++++++.++-+||-
T Consensus 45 tp~~~y~~L~~~---~i~w~~v~~f~~DEr 71 (232)
T 3lhi_A 45 SPIAFFNALSQK---DLDWKNVGITLADER 71 (232)
T ss_dssp TTHHHHHHHHTS---CCCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhc---CCCchheEEEEeeec
Confidence 567777766543 377899999999994
No 490
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=33.16 E-value=33 Score=37.00 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHhc--CCcEEEEcCCCCChhHHhh
Q 012337 197 TPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~--~~dvl~~a~TGsGKT~~~~ 229 (465)
+.+=..|+..++.. .+.+|+.|.+|+|||.+.-
T Consensus 156 faiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 190 (770)
T 1w9i_A 156 FAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (770)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHH
Confidence 34555666666553 4569999999999998743
No 491
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=33.12 E-value=32 Score=37.23 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHhc--CCcEEEEcCCCCChhHHh
Q 012337 197 TPIQKACIPAAAHQ--GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 197 ~~iQ~~~i~~~l~~--~~dvl~~a~TGsGKT~~~ 228 (465)
+.+=..|+..++.. .+.+|+.|.+|+|||.+.
T Consensus 124 faiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 124 FAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 44555666666543 457999999999999874
No 492
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=33.01 E-value=20 Score=38.63 Aligned_cols=17 Identities=35% Similarity=0.241 Sum_probs=14.6
Q ss_pred cEEEEcCCCCChhHHhh
Q 012337 213 DIIGAAETGSGKTLAFG 229 (465)
Q Consensus 213 dvl~~a~TGsGKT~~~~ 229 (465)
.+++.||||+|||...-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999997643
No 493
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=32.98 E-value=18 Score=34.11 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCCChhHHh
Q 012337 209 HQGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~ 228 (465)
..|.-+.+.||+|||||...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35777899999999999653
No 494
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=32.89 E-value=17 Score=37.15 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCChhHHh
Q 012337 212 KDIIGAAETGSGKTLAF 228 (465)
Q Consensus 212 ~dvl~~a~TGsGKT~~~ 228 (465)
+.+++.||+|+|||+..
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35999999999999764
No 495
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=32.69 E-value=20 Score=36.40 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCChhHHhhH
Q 012337 209 HQGKDIIGAAETGSGKTLAFGL 230 (465)
Q Consensus 209 ~~~~dvl~~a~TGsGKT~~~~l 230 (465)
..|.-+++.|++|+|||...+-
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~ 261 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQ 261 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHH
Confidence 3566789999999999965433
No 496
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=32.63 E-value=88 Score=29.73 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCChhHHh
Q 012337 211 GKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 211 ~~dvl~~a~TGsGKT~~~ 228 (465)
|.-+++.|+.|+|||...
T Consensus 144 g~~vl~~G~sG~GKSt~a 161 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETA 161 (314)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred CEEEEEEeCCCCCHHHHH
Confidence 778999999999997543
No 497
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=32.32 E-value=18 Score=32.39 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCChhHH
Q 012337 210 QGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~ 227 (465)
.|.-+.+.|+.|||||..
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 355688999999999974
No 498
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=32.17 E-value=13 Score=31.82 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=15.5
Q ss_pred CCcHHHHHHHHHHHhcCCcEEEEcCCCCChhHH
Q 012337 195 EPTPIQKACIPAAAHQGKDIIGAAETGSGKTLA 227 (465)
Q Consensus 195 ~p~~iQ~~~i~~~l~~~~dvl~~a~TGsGKT~~ 227 (465)
.+++-|....+......-.|++.|++|+|||..
T Consensus 6 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl 38 (188)
T 1zd9_A 6 HHHHHSSGLVPRGSKEEMELTLVGLQYSGKTTF 38 (188)
T ss_dssp -------------CCEEEEEEEECSTTSSHHHH
T ss_pred ccccccccccccCCCCccEEEEECCCCCCHHHH
Confidence 345556666665533345799999999999953
No 499
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=31.71 E-value=22 Score=34.14 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCChhHHh
Q 012337 210 QGKDIIGAAETGSGKTLAF 228 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~ 228 (465)
.+.-+.+.||+|+|||...
T Consensus 128 ~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567889999999999753
No 500
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=31.71 E-value=28 Score=31.21 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCChhHHhh
Q 012337 210 QGKDIIGAAETGSGKTLAFG 229 (465)
Q Consensus 210 ~~~dvl~~a~TGsGKT~~~~ 229 (465)
.+..+.+.|+.|||||...-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45668999999999997643
Done!