BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012338
(465 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255564190|ref|XP_002523092.1| DNA photolyase, putative [Ricinus communis]
gi|223537654|gb|EEF39277.1| DNA photolyase, putative [Ricinus communis]
Length = 458
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/448 (78%), Positives = 385/448 (85%), Gaps = 17/448 (3%)
Query: 22 LATIPSQS--PFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHIS 79
LA +P QS PFAT SLS SL +LP + FF QPKI++LFS P K ++P+QAS LTH+S
Sbjct: 24 LAIVPPQSSPPFATASLSLSLSTILPTH-FFNQPKITSLFSSAPTKARIPSQASALTHLS 82
Query: 80 LSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDN 139
LS S TL ++SFKST+SANPL + LSLGP RP DP+N A IRRASIVWFRNDLRVHDN
Sbjct: 83 LS-SQTLHHPRLSFKSTISANPLHNTLSLGPRRPSDPSNAAGIRRASIVWFRNDLRVHDN 141
Query: 140 ESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDL 199
E LN+ANNES+SVLPVYCFDPR+YGKSSSGFDKTGPYRASFLIESV+DLRKNLQ RGSDL
Sbjct: 142 ECLNSANNESMSVLPVYCFDPREYGKSSSGFDKTGPYRASFLIESVTDLRKNLQDRGSDL 201
Query: 200 VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLY 259
VVRVGKPETVLVELAKAIGADAVYAH+EVSHDEVK+E+KIEAAMKDEG+EVKYFWGSTLY
Sbjct: 202 VVRVGKPETVLVELAKAIGADAVYAHKEVSHDEVKAEDKIEAAMKDEGVEVKYFWGSTLY 261
Query: 260 HLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGL 319
H+DDLPFKL +MP+NYGGFREKV G+E+RKTI ALDQLKG PSRGDVEPG+IPSLLDLGL
Sbjct: 262 HVDDLPFKLEDMPSNYGGFREKVHGLEVRKTIAALDQLKGKPSRGDVEPGEIPSLLDLGL 321
Query: 320 SQSAAMSQVWHGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANF 378
+ + GGKPAA SM GGETEALQRLKKFAAE QAQPPKG G+ DSIYGANF
Sbjct: 322 NPT-------QGGKPAATASMVGGETEALQRLKKFAAECQAQPPKG---GSQDSIYGANF 371
Query: 379 SCKISPWLAMGCLSPRSMFDELKKTAT-SISAASKWNDGESGSSGAGSNWLMFELLWRDF 437
SCKISPWL MGC+SPRSMFDELKKTAT +ISAASK NDG S G NWLMFELLWRDF
Sbjct: 372 SCKISPWLTMGCISPRSMFDELKKTATRTISAASKGNDGGS-PPDTGMNWLMFELLWRDF 430
Query: 438 FRFITKKYSSAKKVVEAVPATACTGALA 465
FRFITKKYSS KK +EA PATACTGALA
Sbjct: 431 FRFITKKYSSPKKQLEATPATACTGALA 458
>gi|224068346|ref|XP_002302716.1| predicted protein [Populus trichocarpa]
gi|222844442|gb|EEE81989.1| predicted protein [Populus trichocarpa]
Length = 471
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/478 (74%), Positives = 401/478 (83%), Gaps = 20/478 (4%)
Query: 1 MDPNKQNLEN--PENHSNEE--QNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKIS 56
MDP+ QNLE PE+ S ++ Q LA + S SPFAT SLS SLP +LP + FF QPKIS
Sbjct: 1 MDPHLQNLETTTPESTSEDQNQQQQLAIV-SSSPFATASLSLSLPTILPTH-FFTQPKIS 58
Query: 57 TLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDP 116
+LFS P K K+PTQA++LTH+SL++S++ K+SFKST+SANPL +PL+LGP RP DP
Sbjct: 59 SLFSSPPTKAKIPTQATSLTHLSLTSSTSSP--KLSFKSTISANPLHTPLTLGPRRPSDP 116
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
+N A RRA IVWFRNDLRVHDNE LN+ANN+S+SVLPVYCFDPRDYGKSSSGFDKTGPY
Sbjct: 117 SNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDKTGPY 176
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA+FLIESVSDLRKNLQARGSDLVVRVG+PETVLVELAKAIGADAVYAHREVSHDEVK+E
Sbjct: 177 RANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEVKAE 236
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ 296
EKIE MKDEG+EVKYFWGSTLYHLDDLPFKL +MP+NYGGF+EKV+G+EIRKTIE LDQ
Sbjct: 237 EKIEELMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQ 296
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVW-------HGGKPAAN-SMKGGETEALQ 348
LKGLPSRGDVEPGDIP+LLDLGL+ + + GK AAN SM GGETEALQ
Sbjct: 297 LKGLPSRGDVEPGDIPNLLDLGLNPAQGTCCIVSLNTCQSQDGKAAANASMVGGETEALQ 356
Query: 349 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT-SI 407
RL KFAAE QAQPPKG G+H+SIYGANFSCKISPWL MGC+S RSMFDELKKTAT +I
Sbjct: 357 RLNKFAAECQAQPPKG---GSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTI 413
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
SAAS N G S S GAG NWLMFEL+WRDFFRFITKKYS+ +K +EA PATACTGA A
Sbjct: 414 SAASNHNSGGSSSPGAGMNWLMFELMWRDFFRFITKKYSAPRKQLEATPATACTGAFA 471
>gi|118484811|gb|ABK94273.1| unknown [Populus trichocarpa]
Length = 457
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/471 (75%), Positives = 400/471 (84%), Gaps = 20/471 (4%)
Query: 1 MDPNKQNLEN--PENHSNEE--QNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKIS 56
MDP+ QNLE PE+ S ++ Q LA + S SPFAT SLS SLP +LP + FF QPKIS
Sbjct: 1 MDPHLQNLETTTPESTSEDQNQQQQLAIV-SSSPFATASLSLSLPTILPTH-FFTQPKIS 58
Query: 57 TLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDP 116
+LFS P K K+PTQA++LTH+SL++S++ K+SFKST+SANPL +PL+LGP RP DP
Sbjct: 59 SLFSSPPTKAKIPTQATSLTHLSLTSSTSSP--KLSFKSTISANPLHTPLTLGPRRPSDP 116
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
+N A RRA IVWFRNDLRVHDNE LN+ANN+S+SVLPVYCFDPRDYGKSSSGFDKTGPY
Sbjct: 117 SNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDKTGPY 176
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA+FLIESVSDLRKNLQARGSDLVVRVG+PETVLVELAKAIGADAVYAHREVSHDEVK+E
Sbjct: 177 RANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHREVSHDEVKAE 236
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ 296
EKIE MKDEG+EVKYFWGSTLYHLDDLPFKL +MP+NYGGF+EKV+G+EIRKTIE LDQ
Sbjct: 237 EKIEELMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYGGFKEKVQGLEIRKTIETLDQ 296
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN-SMKGGETEALQRLKKFAA 355
LKGLPSRGDVEPGDIP+LLDLGL+ + GK AAN SM GGETEALQRL KFAA
Sbjct: 297 LKGLPSRGDVEPGDIPNLLDLGLNPA-------QDGKAAANASMVGGETEALQRLNKFAA 349
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT-SISAASKWN 414
E QAQPPKG G+H+SIYGANFSCKISPWL MGC+S RSMFDELKKTAT ++SAAS N
Sbjct: 350 ECQAQPPKG---GSHESIYGANFSCKISPWLTMGCVSARSMFDELKKTATRTVSAASNHN 406
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
G S S GAG NWLMFEL+WRDFFRFITKKYS+ +K +EA PATACTGA A
Sbjct: 407 SGGSSSPGAGMNWLMFELMWRDFFRFITKKYSAPRKQLEATPATACTGAFA 457
>gi|225437398|ref|XP_002270248.1| PREDICTED: blue-light photoreceptor PHR2 [Vitis vinifera]
Length = 454
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/466 (72%), Positives = 387/466 (83%), Gaps = 13/466 (2%)
Query: 1 MDPNKQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFS 60
MDPN Q LENPE S++EQ LA I T S+S SL VLP + F + PKIS+L +
Sbjct: 1 MDPNLQTLENPETQSSDEQTQLAIIAP----PTASISLSLSAVLPTH-FLLPPKISSLLA 55
Query: 61 HQPNKVKVPTQASTLTHISLSASSTLSPSKISFKST-LSANPLQSPLSLGPHRPLDPNNG 119
H P+KV++P+QA++L LS SS+L+ K FKST +S++PLQSPL LGP R DP+N
Sbjct: 56 HHPSKVRIPSQAASLA--HLSLSSSLNQPKSFFKSTPISSSPLQSPLFLGPRRSSDPSNA 113
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
A IRR+ IVWFRNDLRVHDNE LN+A+NES+S+LPVYCFDPRDYGKSSSGFDKTGPYRAS
Sbjct: 114 AGIRRSCIVWFRNDLRVHDNECLNSASNESMSMLPVYCFDPRDYGKSSSGFDKTGPYRAS 173
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FLIESVSDLR+NLQ RGSDLVVR+GKPETVLVELAKA+GADA+YAHREVSHDEVK EEKI
Sbjct: 174 FLIESVSDLRQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKI 233
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
EAAMK+EG+E+KYFWGSTLYH+DDLPFK+ +MPTNYGGF+EKVKG+EIRKTI LDQL+G
Sbjct: 234 EAAMKEEGVELKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQLRG 293
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LP+RGDVE G+IPSLLDLGLS SA + Q +G A S+ GGETEALQRLKKFAAE QA
Sbjct: 294 LPARGDVEAGEIPSLLDLGLSPSATLPQ--NGMSTANGSLVGGETEALQRLKKFAAECQA 351
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
QPPKG +DSIYGANFSCKISPWLAMGCLSPRSMFDE+KK+A+ +AS DG SG
Sbjct: 352 QPPKG---AANDSIYGANFSCKISPWLAMGCLSPRSMFDEIKKSASRTISASTSKDGGSG 408
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
S G NWLMFEL+WRDFFRFITKKYSSA K V+A PATACTGALA
Sbjct: 409 QSDTGMNWLMFELMWRDFFRFITKKYSSATKQVDAAPATACTGALA 454
>gi|224128470|ref|XP_002320340.1| predicted protein [Populus trichocarpa]
gi|222861113|gb|EEE98655.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/435 (74%), Positives = 363/435 (83%), Gaps = 17/435 (3%)
Query: 37 SFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKST 96
S SL +LP + F QPKIS LFS P K K+PTQA++LTH+SL SST SP K SFKST
Sbjct: 1 SLSLSTILPTH-FLTQPKISALFSSPPTKAKIPTQATSLTHLSL-FSSTSSP-KRSFKST 57
Query: 97 LSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVY 156
+SANPLQ+PL+LGP RP DP+N A RRA IVWFRNDLRVHDNE LN+A+N+S+SVLPVY
Sbjct: 58 ISANPLQTPLTLGPRRPSDPSNAAGTRRACIVWFRNDLRVHDNECLNSASNDSMSVLPVY 117
Query: 157 CFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
CFDPRDYGKSSSGFDKTGPYRA+FLIESVSDLRKNLQARGSDLVVRVG+PETVLVELAKA
Sbjct: 118 CFDPRDYGKSSSGFDKTGPYRANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKA 177
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYG 276
IGADAVYAHREVSHDEVK+E+KIE MKDEG+EVKYFWGSTLYHLDDLPFKL +MP+NYG
Sbjct: 178 IGADAVYAHREVSHDEVKAEDKIEEVMKDEGVEVKYFWGSTLYHLDDLPFKLEDMPSNYG 237
Query: 277 GFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAA 336
GF+EKV+ +EIRKT+E LD+LKGLPSRGDVEPGDIP+LLDLGL+ + GK A
Sbjct: 238 GFKEKVQVLEIRKTVETLDELKGLPSRGDVEPGDIPNLLDLGLNPA-------QDGKATA 290
Query: 337 N-SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRS 395
N SM GGE EALQRL+KFAAE QAQPPKG +G+HDSIYGANFSCKISPWL +GC+SPRS
Sbjct: 291 NASMVGGEAEALQRLQKFAAECQAQPPKGT-NGSHDSIYGANFSCKISPWLTVGCISPRS 349
Query: 396 MFDELKKTATSI----SAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKV 451
MFDELKKTA S G SGS G NWLMFELLWRDFFRFITKKYS+ +K
Sbjct: 350 MFDELKKTAARTISGASNCGGGGGGGSGSPDTGMNWLMFELLWRDFFRFITKKYSAPRKQ 409
Query: 452 VEAVPATAC-TGALA 465
+EA PATAC TGA A
Sbjct: 410 LEATPATACTTGAFA 424
>gi|449436489|ref|XP_004136025.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
gi|449498514|ref|XP_004160558.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 2 [Cucumis
sativus]
Length = 451
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 318/466 (68%), Positives = 376/466 (80%), Gaps = 16/466 (3%)
Query: 1 MDPNKQNLENPENHSNEEQNPLATIPSQS-PFATLSLSFSLPQVLPANTFFIQPKISTLF 59
MDPN LENPE +S+++Q P IP S P A SL+ SL +P+N F +QPK S LF
Sbjct: 1 MDPNSLILENPEPNSSDDQTP--AIPLHSTPLAVASLTLSLSTAIPSN-FLVQPKFSGLF 57
Query: 60 SHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNG 119
S QPNK +VPTQAS+L+ + +S SS L P KIS KS +SANPLQ PLSLGP RP +P+NG
Sbjct: 58 SRQPNKDEVPTQASSLSRLPISCSS-LCPPKISLKSNISANPLQIPLSLGPRRPSEPSNG 116
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
A IRRA+IVWFRNDLR+ DNE LN+A+++S+SVLPVYCFDPRDYGKSSSGFDKTGP+RA+
Sbjct: 117 AGIRRATIVWFRNDLRLQDNECLNSAHDDSMSVLPVYCFDPRDYGKSSSGFDKTGPFRAA 176
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+IESVSDLRKNLQARGS+LVVR+GKPETVL ELAK IGADAVYAH EVSHDE+++EE+I
Sbjct: 177 FVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEMETEERI 236
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E+AMK+E +EVKYFWGSTLYH+DDLPFK+ +MP+++G FREKV+G+ +RKTIEALD++KG
Sbjct: 237 ESAMKEENVEVKYFWGSTLYHIDDLPFKMEDMPSSHGAFREKVQGLSVRKTIEALDKMKG 296
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LPSRGDVEPGDIPSL DLGL+Q AMS+ G S GGETEAL RL+K+AAE +A
Sbjct: 297 LPSRGDVEPGDIPSLSDLGLNQPVAMSK--EGWLAPNTSQVGGETEALHRLQKYAAECRA 354
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
QPPK +G SIYGA FS KISPWL MGC+SPRS+FDEL KT S+ ND G
Sbjct: 355 QPPKATNNGVQSSIYGATFSNKISPWLTMGCISPRSVFDELNKT------VSRKND---G 405
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
+G G+NWLMFELLWRDFFRFITKKY+S KK PATACTGALA
Sbjct: 406 GNGTGTNWLMFELLWRDFFRFITKKYNSTKKQPNPSPATACTGALA 451
>gi|449436487|ref|XP_004136024.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
gi|449498510|ref|XP_004160557.1| PREDICTED: blue-light photoreceptor PHR2-like isoform 1 [Cucumis
sativus]
Length = 459
Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust.
Identities = 317/467 (67%), Positives = 377/467 (80%), Gaps = 10/467 (2%)
Query: 1 MDPNKQNLENPENHSNEEQNPLATIPSQS-PFATLSLSFSLPQVLPANTFFIQPKISTLF 59
MDPN LENPE +S+++Q P IP S P A SL+ SL +P+N F +QPK S LF
Sbjct: 1 MDPNSLILENPEPNSSDDQTP--AIPLHSTPLAVASLTLSLSTAIPSN-FLVQPKFSGLF 57
Query: 60 SHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNG 119
S QPNK +VPTQAS+L+ + +S SS L P KIS KS +SANPLQ PLSLGP RP +P+NG
Sbjct: 58 SRQPNKDEVPTQASSLSRLPISCSS-LCPPKISLKSNISANPLQIPLSLGPRRPSEPSNG 116
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
A IRRA+IVWFRNDLR+ DNE LN+A+++S+SVLPVYCFDPRDYGKSSSGFDKTGP+RA+
Sbjct: 117 AGIRRATIVWFRNDLRLQDNECLNSAHDDSMSVLPVYCFDPRDYGKSSSGFDKTGPFRAA 176
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+IESVSDLRKNLQARGS+LVVR+GKPETVL ELAK IGADAVYAH EVSHDE+++EE+I
Sbjct: 177 FVIESVSDLRKNLQARGSNLVVRIGKPETVLAELAKEIGADAVYAHYEVSHDEMETEERI 236
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E+AMK+E +EVKYFWGSTLYH+DDLPFK+ +MP+++G FREKV+G+ +RKTIEALD++KG
Sbjct: 237 ESAMKEENVEVKYFWGSTLYHIDDLPFKMEDMPSSHGAFREKVQGLSVRKTIEALDKMKG 296
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LPSRGDVEPGDIPSL DLGL+Q AMS+ G S GGETEAL RL+K+AAE +A
Sbjct: 297 LPSRGDVEPGDIPSLSDLGLNQPVAMSK--EGWLAPNTSQVGGETEALHRLQKYAAECRA 354
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT-SISAASKWNDGES 418
QPPK +G SIYGA FS KISPWL MGC+SPRS+FDEL KT + IS + +
Sbjct: 355 QPPKATNNGVQSSIYGATFSNKISPWLTMGCISPRSVFDELNKTVSRCISMPTPLKN--D 412
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
G +G G+NWLMFELLWRDFFRFITKKY+S KK PATACTGALA
Sbjct: 413 GGNGTGTNWLMFELLWRDFFRFITKKYNSTKKQPNPSPATACTGALA 459
>gi|356535153|ref|XP_003536113.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 440
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 322/440 (73%), Positives = 374/440 (85%), Gaps = 11/440 (2%)
Query: 28 QSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLS 87
++ FA SLS SLP + P F+QPK + QP K+KVPTQAS+LTH+SLS ++T
Sbjct: 10 EAAFAVASLSLSLPTIFP----FVQPKNIPSTTLQPTKLKVPTQASSLTHLSLS-TTTPP 64
Query: 88 PSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANN 147
PSK SFKST+SANPL +PLSL PHRP DP+N AA+RRA++VWFRNDLR+ DNE L ANN
Sbjct: 65 PSKTSFKSTVSANPLHAPLSLAPHRPRDPSNAAALRRAAVVWFRNDLRLLDNECLTAANN 124
Query: 148 ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPE 207
+S+SVLPVYCFDP DYGKS+SGFDKTGPYRA+FLI+SVSDLR++LQARGSDLVVRVGKPE
Sbjct: 125 DSLSVLPVYCFDPSDYGKSASGFDKTGPYRAAFLIDSVSDLRRSLQARGSDLVVRVGKPE 184
Query: 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK 267
TVLVELAKA+GADAVYAHREVSHDE K+EEK+EAAMK+E +EVKYFWGSTLYH+DDLPF+
Sbjct: 185 TVLVELAKAVGADAVYAHREVSHDEAKAEEKVEAAMKEENVEVKYFWGSTLYHVDDLPFQ 244
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ 327
L +MP+NYGGFR++V+ +E+RKTIEALD LKG+PSRGD E G+IPSL+DLGL+ SA MSQ
Sbjct: 245 LEDMPSNYGGFRDRVQKLEVRKTIEALDHLKGMPSRGDFELGEIPSLMDLGLNPSATMSQ 304
Query: 328 VWHGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWL 386
GK AN SM GGETEALQRLKKFAAE AQP KG KDG SIYGANFSCKISPWL
Sbjct: 305 ---DGKFGANASMIGGETEALQRLKKFAAECAAQPNKGFKDGTQ-SIYGANFSCKISPWL 360
Query: 387 AMGCLSPRSMFDELKKTAT-SISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
AMGCLSPR+M++ELKKT + +ISA++ NDG +GSS G+NWLMFELLWRDFFRFITKKY
Sbjct: 361 AMGCLSPRTMYEELKKTTSRAISASADKNDGGNGSSRNGTNWLMFELLWRDFFRFITKKY 420
Query: 446 SSAKKVVEAVPATACTGALA 465
SSAKK +EA P TAC GA A
Sbjct: 421 SSAKKQLEAAPVTACAGAYA 440
>gi|357442473|ref|XP_003591514.1| DNA photolyase protein [Medicago truncatula]
gi|355480562|gb|AES61765.1| DNA photolyase protein [Medicago truncatula]
Length = 456
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 316/404 (78%), Positives = 352/404 (87%), Gaps = 8/404 (1%)
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFK-STLSANPLQSPLSLGPHRPLDPNNGAAIR 123
K+KVPTQAS+LTH+SLS + SPS +FK S+ S+NPL+SPLSL PHRP DP++ AA+R
Sbjct: 58 KLKVPTQASSLTHLSLSTKTHSSPSNKTFKKSSFSSNPLKSPLSLIPHRPNDPSSAAALR 117
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +IVWFRNDLRVHDNE+LNTANNES+SVLPVYCFDP DYGKSSSGFDKTGPYRASFLIE
Sbjct: 118 RTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIE 177
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SVSDLRKNL+ARGSDLVVRVGKPETVLVELAK IGADAVY HREVSHDEVK EEKIE M
Sbjct: 178 SVSDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKM 237
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
K+E +EVKYFWGSTLYH++DLPF L +MP+NYGGFR++V+ +EIRKTIEALDQLKGLPSR
Sbjct: 238 KEENVEVKYFWGSTLYHVEDLPFGLEDMPSNYGGFRDRVQKLEIRKTIEALDQLKGLPSR 297
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPP 362
GDV+ GDIP+L+DLGL+ SA MSQ GK N SM GGETEALQRLK+FAAE +AQ
Sbjct: 298 GDVQLGDIPTLMDLGLNPSATMSQ---DGKQVPNSSMTGGETEALQRLKRFAAECEAQSN 354
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW-NDGESGSS 421
KG KDG DSIYGANFSCKISPWLAMGCLSPR+MFDELKKTA+S +AS NDG GSS
Sbjct: 355 KGFKDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDG--GSS 412
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
G+NWLMFELLWRDFFRFITKKYSS KK +EA PATACTGALA
Sbjct: 413 KTGTNWLMFELLWRDFFRFITKKYSSTKKQLEAAPATACTGALA 456
>gi|388494660|gb|AFK35396.1| unknown [Medicago truncatula]
Length = 456
Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust.
Identities = 313/403 (77%), Positives = 352/403 (87%), Gaps = 6/403 (1%)
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFK-STLSANPLQSPLSLGPHRPLDPNNGAAIR 123
K+KVPTQAS+LTH+SLS + SPS +FK S+ S+NPL+SPLSL PHRP DP++ AA+R
Sbjct: 58 KLKVPTQASSLTHLSLSTKTHSSPSNKTFKKSSFSSNPLKSPLSLIPHRPNDPSSAAALR 117
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +IVWFRNDLRVHDNE+LNTANNES+SVLPVYCFDP DYGKSSSGFDKTGPYRASFLIE
Sbjct: 118 RTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIE 177
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+SDLRKNL+ARGSDLVVRVGKPETVLVELAK IGADAVY HREVSHDEVK EEKIE M
Sbjct: 178 SISDLRKNLKARGSDLVVRVGKPETVLVELAKEIGADAVYCHREVSHDEVKMEEKIEGKM 237
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
K+E +EVKYFWGSTLYH++DLPF L +MP+NYGGFR++V+ +EIRKTIEALDQLKGLPSR
Sbjct: 238 KEENVEVKYFWGSTLYHVEDLPFGLEDMPSNYGGFRDRVQKLEIRKTIEALDQLKGLPSR 297
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
GDV+ GDIP+L+DLGL+ SA MSQ G + +SM GGETEALQRLK+FAAE +AQ K
Sbjct: 298 GDVQLGDIPTLMDLGLNPSAIMSQ--DGKQVPNSSMTGGETEALQRLKRFAAECEAQSNK 355
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW-NDGESGSSG 422
G KDG DSIYGANFSCKISPWLAMGCLSPR+MFDELKKTA+S +AS NDG GSS
Sbjct: 356 GFKDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDG--GSSK 413
Query: 423 AGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
G+NWLMFELLWRDFFRFITKKYSS KK +EA PATACTGALA
Sbjct: 414 TGTNWLMFELLWRDFFRFITKKYSSTKKQLEAAPATACTGALA 456
>gi|356500345|ref|XP_003518993.1| PREDICTED: blue-light photoreceptor PHR2-like [Glycine max]
Length = 428
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 314/428 (73%), Positives = 364/428 (85%), Gaps = 20/428 (4%)
Query: 28 QSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLS 87
++ A S+S SLP+VLP F QP + QP K+KVPTQAS+LTH+SLS +
Sbjct: 7 EAALAVASVSLSLPRVLP----FFQPT-----TPQPTKLKVPTQASSLTHLSLS-----T 52
Query: 88 PSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANN 147
PSK SFKST+S+ PL +PLSLGPHRP DP+N AA+RRA++VWFRNDLR+ DNE L ANN
Sbjct: 53 PSKTSFKSTISSTPLHAPLSLGPHRPRDPSNAAALRRAAVVWFRNDLRLLDNECLTAANN 112
Query: 148 ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPE 207
ES+SVLPVYCFDP DYGKS+SGFDKTGPYRA+FLI+SVSDLR+NLQARGSDLVVRVGKPE
Sbjct: 113 ESLSVLPVYCFDPADYGKSASGFDKTGPYRAAFLIDSVSDLRRNLQARGSDLVVRVGKPE 172
Query: 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK 267
VLVELAKA+GADAVYAHREVSHDE K+EE++EAAMK+E +EVKYFWGSTLYH+DDLPF+
Sbjct: 173 AVLVELAKAVGADAVYAHREVSHDEAKAEERVEAAMKEENVEVKYFWGSTLYHVDDLPFQ 232
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ 327
L +MP+NYGGFR++V+ +E+RKTIEALDQLKG+PSRGDVEPG+IPSL+DLGL+ SA MSQ
Sbjct: 233 LEDMPSNYGGFRDRVQKLEVRKTIEALDQLKGMPSRGDVEPGEIPSLMDLGLNPSATMSQ 292
Query: 328 VWHGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWL 386
GK AN SM GGETEALQ+LKKFAAE AQP KG KDG SIYGANFSCKISPWL
Sbjct: 293 ---NGKCVANASMVGGETEALQKLKKFAAECAAQPHKGFKDGTQ-SIYGANFSCKISPWL 348
Query: 387 AMGCLSPRSMFDELKKTATS-ISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
AMGCLSPR+M++ELKKTA ISA+S NDG +GSS G+NWLMFELLWRDFFRFITKKY
Sbjct: 349 AMGCLSPRTMYEELKKTAGRVISASSNRNDGGNGSSRTGTNWLMFELLWRDFFRFITKKY 408
Query: 446 SSAKKVVE 453
S+AKK +E
Sbjct: 409 STAKKQLE 416
>gi|297824863|ref|XP_002880314.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
gi|297326153|gb|EFH56573.1| photolyase/blue-light receptor 2 [Arabidopsis lyrata subsp. lyrata]
Length = 448
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 326/468 (69%), Positives = 380/468 (81%), Gaps = 23/468 (4%)
Query: 1 MDPN--KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTL 58
MD N ++NL NPE S EE+NPLA I S P A+LSL+ + P +T F++ L
Sbjct: 1 MDSNLEEKNL-NPETKSAEEENPLAIIHSSLPIASLSLT-----LFPTSTQFLK-----L 49
Query: 59 FSHQPNKVKVPTQASTLTHISLSASSTLSPS-KISFKSTLSANPLQSPLSLGPHRPLDPN 117
FSH PNKVK+PTQAS+LTH+SLS+S +ISFKST++ANPL SPLS+ P RP+DP+
Sbjct: 50 FSHHPNKVKIPTQASSLTHLSLSSSPVSPLPSRISFKSTIAANPLHSPLSIVPRRPVDPS 109
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
+ AA+RRA++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+R
Sbjct: 110 SAAALRRAAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFR 169
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
A FLIESVS+LRKNLQARGS+LVVRVGKPE VLVELAK IGADAVYAHREVSHDEVK+E
Sbjct: 170 AQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEG 229
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
KIE+AMK+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV +EIRKTI ALDQL
Sbjct: 230 KIESAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVHKLEIRKTIAALDQL 289
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
K LPSRGDVE GDIPSLLDLG+S +A SQ GKP +M GGETEAL RLK FAA+
Sbjct: 290 KSLPSRGDVELGDIPSLLDLGISPTARTSQ---EGKP---TMVGGETEALTRLKSFAADC 343
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
QA+ KGN+ G ++S++GANFSCKISPWLAMG +SPRSMFDELKKT ISA++
Sbjct: 344 QARLSKGNQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKT---ISASTTTTTPR 400
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
+G G NWLM+ELLWRDFFRFITKKYSSAK VEA PATACTGA
Sbjct: 401 NGPGDTGLNWLMYELLWRDFFRFITKKYSSAKTQVEAGPATACTGAFV 448
>gi|15226633|ref|NP_182281.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
gi|116248577|sp|Q8LB72.2|PHR2_ARATH RecName: Full=Blue-light photoreceptor PHR2
gi|2529668|gb|AAC62851.1| photolyase/blue-light receptor (PHR2) [Arabidopsis thaliana]
gi|3319288|gb|AAC26199.1| photolyase/blue light photoreceptor PHR2 [Arabidopsis thaliana]
gi|115646759|gb|ABJ17108.1| At2g47590 [Arabidopsis thaliana]
gi|330255768|gb|AEC10862.1| photolyase/blue-light receptor 2 [Arabidopsis thaliana]
Length = 447
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 321/461 (69%), Positives = 380/461 (82%), Gaps = 20/461 (4%)
Query: 5 KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPN 64
++NL NPE S EEQNPLA S P A+LSL+ + P++T F++ LF+H PN
Sbjct: 7 EENL-NPETKSAEEQNPLAIFHSSLPIASLSLT-----LFPSSTQFLK-----LFAHHPN 55
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRR 124
KVK+PTQAS+LTH+SLS+ S S+ISFKST++ANPLQSPLS+ P RP+DP++ AA+RR
Sbjct: 56 KVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRR 115
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIES
Sbjct: 116 AAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIES 175
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
VS+LRKNLQARGS+LVVRVGKPE VLVELAK IGADAVYAHREVSHDEVK+E KIE AMK
Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK 235
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV+ +EIRKTI ALDQLK LPSRG
Sbjct: 236 EEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSRG 295
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
DVE GDIPSLLDLG+S + SQ GKP +M GGETEAL RLK FAA+ QA+ KG
Sbjct: 296 DVELGDIPSLLDLGISPTPRTSQ---EGKP---TMVGGETEALTRLKSFAADCQARLSKG 349
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
N+ G ++S++GANFSCKISPWLAMG +SPRSMFDELKKT ++ + ++ +G + G
Sbjct: 350 NQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDT---G 406
Query: 425 SNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
NWLM+ELLWRDFFRFITKKYSSAK VEA PATACTGA A
Sbjct: 407 LNWLMYELLWRDFFRFITKKYSSAKTQVEAGPATACTGAFA 447
>gi|21592984|gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust.
Identities = 320/461 (69%), Positives = 379/461 (82%), Gaps = 20/461 (4%)
Query: 5 KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPN 64
++NL NPE S EEQNPLA S P A+LSL+ + P++T F++ LF+H PN
Sbjct: 7 EENL-NPETKSAEEQNPLAIFHSSLPIASLSLT-----LFPSSTQFLK-----LFAHHPN 55
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRR 124
KVK+PTQAS+LTH+SLS+ S S+ISFKST++ANPLQSPLS+ P RP+DP++ AA+RR
Sbjct: 56 KVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRR 115
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIES
Sbjct: 116 AAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIES 175
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
VS+LRKNLQARGS+LVVRVGKPE VLVELAK IGADAVYAHREVSHDEVK+E KIE AMK
Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK 235
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV+ +EIRKTI ALDQLK LPSRG
Sbjct: 236 EEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSRG 295
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
DVE GDIPSLLDLG+S + SQ GKP +M GGETEAL RLK FAA+ Q + KG
Sbjct: 296 DVELGDIPSLLDLGISPTPRTSQ---EGKP---TMVGGETEALTRLKSFAADCQXRXSKG 349
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
N+ G ++S++GANFSCKISPWLAMG +SPRSMFDELKKT ++ + ++ +G + G
Sbjct: 350 NQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDT---G 406
Query: 425 SNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
NWLM+ELLWRDFFRFITKKYSSAK VEA PATACTGA A
Sbjct: 407 LNWLMYELLWRDFFRFITKKYSSAKTQVEAGPATACTGAFA 447
>gi|116787609|gb|ABK24574.1| unknown [Picea sitchensis]
gi|224284157|gb|ACN39815.1| unknown [Picea sitchensis]
Length = 526
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 234/352 (66%), Positives = 292/352 (82%), Gaps = 6/352 (1%)
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
DP+N AA+R+A+IVWFRNDLRVHDNE+L++AN E++SVLPVYCFDPRDYGKSSSGFDKTG
Sbjct: 179 DPSNAAALRKAAIVWFRNDLRVHDNEALSSANKEALSVLPVYCFDPRDYGKSSSGFDKTG 238
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
P+RA+FL+E V++LR NL+ RGSDLVVR+G+PE VLVELAK+IGADA+YAH+EVSH+E+
Sbjct: 239 PFRATFLLECVANLRANLRERGSDLVVRIGRPEEVLVELAKSIGADALYAHQEVSHEEIA 298
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL 294
+EEKI++++++EG+E K+FWGSTLYH +DLPFKL +MP+NYGGFRE+V+ + +R+ I+
Sbjct: 299 TEEKIKSSLEEEGVETKFFWGSTLYHPEDLPFKLQDMPSNYGGFRERVQRLSVRQIIKDP 358
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN-SMKGGETEALQRLKKF 353
+QLKGLP+RGDVEPG +PSLLDLGL+ + GK A N S+ GGE+EALQRLK+F
Sbjct: 359 EQLKGLPTRGDVEPGKVPSLLDLGLNPNFG-----QDGKTAVNASLTGGESEALQRLKRF 413
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
A E + QP K KDG+ +S+YGANFSCKISPWLAMGCLSPR MF+ELKK+ ++S
Sbjct: 414 AVECREQPNKLGKDGSGESLYGANFSCKISPWLAMGCLSPRYMFEELKKSEKISISSSLG 473
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
+ S G NWL FELLWRDFFRFITKKY SAKK +A P TACTGALA
Sbjct: 474 KSSGADSGQGGLNWLKFELLWRDFFRFITKKYGSAKKQQDASPVTACTGALA 525
>gi|326493834|dbj|BAJ85379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 448
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/438 (57%), Positives = 314/438 (71%), Gaps = 21/438 (4%)
Query: 30 PFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPS 89
PFA+ SLS SL P + P+ V +PTQ STL + L S+ S
Sbjct: 20 PFASFSLSLSL----------RTPTAHATLASVPSAVHLPTQISTLA-VCLHPSAASSSP 68
Query: 90 KISFKSTLSANPLQSPL---SLGPHRPLDPNN-GAAIRRASIVWFRNDLRVHDNESLNTA 145
+ + + +A L SPL S G R GAA RR ++VWFR DLR+HD+E L+ A
Sbjct: 69 RRATRLNAAAASLLSPLTASSPGLSRSFPSGAPGAAGRRRTLVWFRADLRLHDHEPLHAA 128
Query: 146 NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGK 205
S S+LPV+ FDPRD+GKS SGFD+TGPYRASFL++SV+DLR++L+ARG DLVVRVG+
Sbjct: 129 VGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRASFLLDSVADLRRSLRARGGDLVVRVGR 188
Query: 206 PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLP 265
PE V+ ELA+A GA+AVYAH EVS DE ++EEK+ A++ EG+EVKYFWGSTLYHLDDLP
Sbjct: 189 PEVVIPELARAAGAEAVYAHGEVSRDECRTEEKVSKAIEKEGVEVKYFWGSTLYHLDDLP 248
Query: 266 FKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAM 325
F+L +MP++YGGFRE VKG+E+RK ++A +++K +P + +EPGDIP+L +LGLS AM
Sbjct: 249 FRLNDMPSSYGGFREAVKGLEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAM 308
Query: 326 SQVWHGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISP 384
+Q K AA S + GGE EAL+RLKKFAAE QP K KD +SIYGANFSCKISP
Sbjct: 309 AQ---DSKSAAGSNLIGGEAEALERLKKFAAECCMQPNKAVKDSTQNSIYGANFSCKISP 365
Query: 385 WLAMGCLSPRSMFDELKKTAT-SISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITK 443
WLA GCLSPR M++ELKK A +I + S DG+ G+S AG+NWLMFELLWRDFFRF+TK
Sbjct: 366 WLATGCLSPRFMYEELKKHAIRAIPSGSTPKDGD-GTSDAGTNWLMFELLWRDFFRFVTK 424
Query: 444 KYSSAKKVVEAVPATACT 461
KYSSA+K E PAT CT
Sbjct: 425 KYSSAQKTSEVAPATGCT 442
>gi|357112286|ref|XP_003557940.1| PREDICTED: blue-light photoreceptor PHR2-like [Brachypodium
distachyon]
Length = 447
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/425 (55%), Positives = 303/425 (71%), Gaps = 32/425 (7%)
Query: 53 PKISTLFSHQPNKVKVPTQASTL----------------THISLSASSTLSPSKISFKST 96
P I + P+ + +PTQ STL T ++ +A+S LSP S S
Sbjct: 33 PTIPATLASVPSAIHLPTQVSTLAVCLHPSAASSSPRRSTRLNAAAASLLSPFPASTPSL 92
Query: 97 LSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVY 156
+ P +P GAA RR ++VWFR DLR+HD+E L+ A S S+LPV+
Sbjct: 93 SRSFPSGAP-------------GAAGRRRTLVWFRADLRLHDHEPLHAAVGASSSLLPVF 139
Query: 157 CFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
FDPRD+GKS SGFD+TGPYRA+FL++SV+DLR++L+ARG DLVVRVG+PE V+ ELA+A
Sbjct: 140 VFDPRDFGKSPSGFDRTGPYRANFLLDSVADLRRSLRARGGDLVVRVGRPEVVIPELARA 199
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYG 276
GA+AVYAH EVS DE ++E+K+ A+K EG+EVKYFWGSTLYH+DDLPF+L +MP+NYG
Sbjct: 200 AGAEAVYAHGEVSRDECRTEDKVSQAIKKEGVEVKYFWGSTLYHMDDLPFRLEDMPSNYG 259
Query: 277 GFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAA 336
GFRE VKG+E+RK ++A +++K +P + +EPGDIP+L +LGLS AM+Q
Sbjct: 260 GFREAVKGLEVRKVLDAPEEVKCVPMKNVLEPGDIPTLGELGLSAPPAMAQ--DSKSAVG 317
Query: 337 NSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 396
+++ GGE EAL+RLKKFAAE QP K KD DSIYGANFSCKISPWLA GCLSPR M
Sbjct: 318 STLIGGEAEALERLKKFAAECCMQPNKSAKDSTRDSIYGANFSCKISPWLATGCLSPRFM 377
Query: 397 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVP 456
++ELKKT +I + S +G+ G+S AG+NWLMFELLWRDFFRF+TKKYSSA+K E P
Sbjct: 378 YEELKKTIRAIPSGSAPKNGD-GTSDAGTNWLMFELLWRDFFRFVTKKYSSAQKTSEVAP 436
Query: 457 ATACT 461
AT CT
Sbjct: 437 ATGCT 441
>gi|242040969|ref|XP_002467879.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
gi|241921733|gb|EER94877.1| hypothetical protein SORBIDRAFT_01g035750 [Sorghum bicolor]
Length = 447
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/445 (54%), Positives = 310/445 (69%), Gaps = 22/445 (4%)
Query: 26 PSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASST 85
PS PFA+ SL+ S+ P TL S P+ + +PTQ STL + L S+
Sbjct: 18 PSLLPFASFSLALSI----------RAPATPTLAS-VPSTIHLPTQISTLA-VCLHPSAA 65
Query: 86 LSPSKISFKSTLSANPLQSPL---SLGPHRPLDPNN-GAAIRRASIVWFRNDLRVHDNES 141
PS+ + + + + +PL + G R AA RR ++VWFR DLR+HD+E
Sbjct: 66 QPPSRRPTRLNSATSSVIAPLPSSTPGLSRSFPSGAPAAAGRRRTLVWFRADLRLHDHEP 125
Query: 142 LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA+FL++SV+DLR++L+ARG DLVV
Sbjct: 126 FHAAAGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSVADLRRSLRARGGDLVV 185
Query: 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261
RVG+PE V+ ELA+A GA+AVYAH EVS DEV++EE+++ A++ EGI VKYFWGSTLYH+
Sbjct: 186 RVGRPEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQKAVEKEGINVKYFWGSTLYHV 245
Query: 262 DDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ 321
+DLPF L +MP+NYGGFRE VKG+E+RK +EA +++K +P + +EPGDIP+L +LGL+
Sbjct: 246 EDLPFHLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTA 305
Query: 322 SAAMSQVWHGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSC 380
AM+Q KPA S + GGETEAL+RLKKFA E QP K +K DSIYGANFSC
Sbjct: 306 PPAMAQ---DSKPAVGSTLIGGETEALERLKKFAVECSMQPNKADKSNTQDSIYGANFSC 362
Query: 381 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
KISPWLA GCLSPR M++ELKK AT G+S AG+NWLMFELLWRDFFRF
Sbjct: 363 KISPWLATGCLSPRFMYEELKKHATRAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFRF 422
Query: 441 ITKKYSSAKKVVEAVPATACTGALA 465
ITKKYSS +K E AT CT A A
Sbjct: 423 ITKKYSSVQKTSEV--ATGCTPAPA 445
>gi|212275814|ref|NP_001131008.1| uncharacterized LOC100192113 [Zea mays]
gi|194690696|gb|ACF79432.1| unknown [Zea mays]
gi|194701496|gb|ACF84832.1| unknown [Zea mays]
gi|414866740|tpg|DAA45297.1| TPA: photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 311/445 (69%), Gaps = 22/445 (4%)
Query: 26 PSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLT---HISLSA 82
PS PFA+ SL S+ P TL S P+ + +PTQ STL H S +
Sbjct: 17 PSLLPFASFSLGLSI----------RAPATPTLAS-VPSTLHLPTQISTLAVCLHPSAAQ 65
Query: 83 SSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNN-GAAIRRASIVWFRNDLRVHDNES 141
S+ ++++ ++ PL S + G R AA RR ++VWFR DLR+HD+E
Sbjct: 66 PSSRRTTRLNSATSSVIAPLPSS-TPGLSRSFPSGAPAAAGRRRTLVWFRADLRLHDHEP 124
Query: 142 LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA+FL++SV+DLR++L+ARG DLVV
Sbjct: 125 FHAAAGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSVADLRRSLRARGGDLVV 184
Query: 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261
RVG+PE V+ ELA+A GA+AVYAH EVS DEV++EE+++ A++ EGI VKYFWGSTLYH+
Sbjct: 185 RVGRPEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQKAVEKEGINVKYFWGSTLYHV 244
Query: 262 DDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ 321
+DLPF+L +MP+NYGGFRE VKG+E+RK +EA +++K +P + +EPGDIP+L +LGL+
Sbjct: 245 EDLPFRLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTA 304
Query: 322 SAAMSQVWHGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSC 380
AMSQ KPA S + GGETEAL+RLKKFAAE QP K +K DSIYGANFSC
Sbjct: 305 PPAMSQ---DSKPAVGSTLIGGETEALERLKKFAAECSMQPNKVDKSNTQDSIYGANFSC 361
Query: 381 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
KISPWLA GCLSPR M++ELKK AT G+S AG+NWLMFELLWRDFFRF
Sbjct: 362 KISPWLATGCLSPRFMYEELKKHATKAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFRF 421
Query: 441 ITKKYSSAKKVVEAVPATACTGALA 465
ITKKYSS +K E AT CT A A
Sbjct: 422 ITKKYSSVQKTSEV--ATGCTPAPA 444
>gi|195651415|gb|ACG45175.1| photolyase/blue-light receptor PHR2 [Zea mays]
Length = 446
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/445 (55%), Positives = 310/445 (69%), Gaps = 22/445 (4%)
Query: 26 PSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLT---HISLSA 82
PS PFA+ SL S+ P TL S P+ + +PTQ STL H S +
Sbjct: 17 PSLLPFASFSLGLSI----------RAPATPTLAS-VPSTLHLPTQISTLAVCLHPSAAQ 65
Query: 83 SSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNN-GAAIRRASIVWFRNDLRVHDNES 141
S+ ++++ ++ PL S + G R AA RR ++VWFR DLR+HD+E
Sbjct: 66 PSSRRTTRLNSATSSVIAPLPSS-TPGLSRSFPSGAPAAAGRRRTLVWFRADLRLHDHEP 124
Query: 142 LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA+FL++SV+DLR++L+ARG DLVV
Sbjct: 125 FHAAAGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSVADLRRSLRARGGDLVV 184
Query: 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261
RVG PE V+ ELA+A GA+AVYAH EVS DEV++EE+++ A++ EGI VKYFWGSTLYH+
Sbjct: 185 RVGMPEVVIPELARAAGAEAVYAHGEVSRDEVRAEERVQKAVEKEGINVKYFWGSTLYHV 244
Query: 262 DDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ 321
+DLPF+L +MP+NYGGFRE VKG+E+RK +EA +++K +P + +EPGDIP+L +LGL+
Sbjct: 245 EDLPFRLEDMPSNYGGFREAVKGLEVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTA 304
Query: 322 SAAMSQVWHGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSC 380
AMSQ KPA S + GGETEAL+RLKKFAAE QP K +K DSIYGANFSC
Sbjct: 305 PPAMSQ---DSKPAVGSTLIGGETEALERLKKFAAECSMQPNKVDKSNTQDSIYGANFSC 361
Query: 381 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
KISPWLA GCLSPR M++ELKK AT G+S AG+NWLMFELLWRDFFRF
Sbjct: 362 KISPWLATGCLSPRFMYEELKKHATKAIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFRF 421
Query: 441 ITKKYSSAKKVVEAVPATACTGALA 465
ITKKYSS +K E AT CT A A
Sbjct: 422 ITKKYSSVQKTSEV--ATGCTPAPA 444
>gi|115452953|ref|NP_001050077.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|108708083|gb|ABF95878.1| photolyase/blue-light receptor PHR2, putative, expressed [Oryza
sativa Japonica Group]
gi|113548548|dbj|BAF11991.1| Os03g0343400 [Oryza sativa Japonica Group]
gi|125586213|gb|EAZ26877.1| hypothetical protein OsJ_10801 [Oryza sativa Japonica Group]
Length = 459
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/344 (63%), Positives = 276/344 (80%), Gaps = 6/344 (1%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA RR ++VWFR DLR+HD+E L+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA
Sbjct: 114 AAGRRRTLVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRAG 173
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL++SV+DLR+ L+ARG DLVVRVG+PE V+ ELA+A GA+AV+AH EVS DE ++EEK+
Sbjct: 174 FLLDSVADLRRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVSRDECRAEEKV 233
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
A++ EGIEVKYFWGSTLYHLDDLPF+L +MP+NYGGFRE VKG+++RK ++A +++K
Sbjct: 234 SKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKC 293
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS-MKGGETEALQRLKKFAAEYQ 358
+P + +EPG+IP+L +LGL+ AM+ HG K A S + GGE EAL+RLKKFA+E
Sbjct: 294 VPMKNVLEPGEIPTLAELGLTAPPAMA---HGSKAAVGSTLIGGEAEALERLKKFASECC 350
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT-SISAASKWNDGE 417
QP KG+KD DSIYGANFSCKISPWLA GCLSPR M++ELKK A+ +I + S +G+
Sbjct: 351 MQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKNGD 410
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACT 461
G+S AG+NWLMFELLWRDFFRFITKKYSSA+K E PAT CT
Sbjct: 411 -GTSDAGTNWLMFELLWRDFFRFITKKYSSAQKTSEVAPATGCT 453
>gi|125543822|gb|EAY89961.1| hypothetical protein OsI_11521 [Oryza sativa Indica Group]
Length = 451
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/344 (63%), Positives = 276/344 (80%), Gaps = 6/344 (1%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA RR ++VWFR DLR+HD+E L+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA
Sbjct: 106 AAGRRRTLVWFRADLRLHDHEPLHAAVGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRAG 165
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL++SV+DLR+ L+ARG DLVVRVG+PE V+ ELA+A GA+AV+AH EVS DE ++EEK+
Sbjct: 166 FLLDSVADLRRGLRARGGDLVVRVGRPEVVIPELARAAGAEAVFAHGEVSRDECRAEEKV 225
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
A++ EGIEVKYFWGSTLYHLDDLPF+L +MP+NYGGFRE VKG+++RK ++A +++K
Sbjct: 226 SKAVEKEGIEVKYFWGSTLYHLDDLPFRLEDMPSNYGGFREAVKGLDVRKVLDAPEEVKC 285
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS-MKGGETEALQRLKKFAAEYQ 358
+P + +EPG+IP+L +LGL+ AM+ HG K A S + GGE EAL+RLKKFA+E
Sbjct: 286 VPMKNVLEPGEIPTLAELGLTAPPAMA---HGSKAAVGSTLIGGEAEALERLKKFASECC 342
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT-SISAASKWNDGE 417
QP KG+KD DSIYGANFSCKISPWLA GCLSPR M++ELKK A+ +I + S +G+
Sbjct: 343 MQPNKGDKDSTRDSIYGANFSCKISPWLATGCLSPRFMYEELKKHASRAIPSGSTPKNGD 402
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACT 461
G+S AG+NWLMFELLWRDFFRFITKKYSSA+K E PAT CT
Sbjct: 403 -GTSDAGTNWLMFELLWRDFFRFITKKYSSAQKTSEVAPATGCT 445
>gi|168016051|ref|XP_001760563.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688260|gb|EDQ74638.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 242/428 (56%), Positives = 307/428 (71%), Gaps = 44/428 (10%)
Query: 60 SHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKST--LSANPLQSPLSLGPHRPLDPN 117
SH P VP AS+ ++L +P +S KS +SA P L GP DP
Sbjct: 119 SHSP----VPVMASSKVQVALDIP-VATPITVSKKSANYVSAFPEYEKLR-GPDFK-DPA 171
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
NG +RRASIVWFRNDLRVHDNE+L +AN +S+S+LPVYCFDP+DYGKSSSGFDKTGPYR
Sbjct: 172 NGCGLRRASIVWFRNDLRVHDNEALVSANRDSLSILPVYCFDPKDYGKSSSGFDKTGPYR 231
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
A+FL+E V++LR +L+ RGSDL+VRVG PE VLV+LAK++GA+A+Y H+EV+++E+++EE
Sbjct: 232 ANFLLECVANLRSSLRERGSDLIVRVGSPEAVLVDLAKSVGAEALYVHQEVTYEELQAEE 291
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
K+ AA++++GIE KYFWGSTL+HL+DLPFKL +MP+NYGGFREKV+ V IR TIEA QL
Sbjct: 292 KVAAALQEKGIETKYFWGSTLFHLEDLPFKLQDMPSNYGGFREKVQNVAIRDTIEAPQQL 351
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGET-----------EA 346
KGLP+ G+V+PG IPS+ LGL+ PA N KG T EA
Sbjct: 352 KGLPACGNVKPGSIPSIEVLGLN-------------PATNLRKGSVTVGGDGLLGGEEEA 398
Query: 347 LQRLKKFAAEYQAQ-----PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 401
LQRL+KFA E ++Q K + + DS+YGANFSCKISPWL MGCLSPR MF++LK
Sbjct: 399 LQRLQKFALEARSQTSNLKASKSQSESSGDSLYGANFSCKISPWLTMGCLSPRRMFEDLK 458
Query: 402 KTATSISAASKWNDGESGSSGAGS-----NWLMFELLWRDFFRFITKKYSSAKKVVEAVP 456
K+A+S SA + + +SGAGS NWL+FELLWRDFFRFITKKY + K++ EA P
Sbjct: 459 KSASSASAGAM-SALAVKASGAGSDDNGLNWLVFELLWRDFFRFITKKYGTGKRLSEATP 517
Query: 457 ATACTGAL 464
ATA T +L
Sbjct: 518 ATASTASL 525
>gi|302765677|ref|XP_002966259.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
gi|300165679|gb|EFJ32286.1| hypothetical protein SELMODRAFT_85247 [Selaginella moellendorffii]
Length = 345
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/347 (61%), Positives = 267/347 (76%), Gaps = 14/347 (4%)
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
+P GA +RRASIVWFRNDLRVHDNE+L AN ES+SV+PVYCFDP+DYGKS+SGFDKTG
Sbjct: 11 NPAAGAGMRRASIVWFRNDLRVHDNEALAAANKESLSVIPVYCFDPKDYGKSASGFDKTG 70
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
PYRA FL+E V++LR NL+ RGS+LVVR+G P VL +AKA+GAD +YAH+EVS +E+
Sbjct: 71 PYRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELG 130
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL 294
E+K+ +A+KD+ ++VK+FWGSTL+H+DDLPFK+ +MP+NYGGFR+KVK V++R EA
Sbjct: 131 MEDKVTSALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAP 190
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
QLKGLPS+GDV+ GDIPSL +LGLS +A G+ N M GGE EAL+RLK F+
Sbjct: 191 KQLKGLPSQGDVKAGDIPSLQELGLSPVSA------AGQHKRNRMIGGEVEALKRLKSFS 244
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ PP +K G +SIYGANFS KISPWLAMGCLSPR MF++LKKT + S
Sbjct: 245 --LVSPPP--SKGGKENSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSVV- 299
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKV-VEAVPATAC 460
S S +G WL+FELLWRDFFRF+TKK+ +AKK EAVPA AC
Sbjct: 300 --ASTSGDSGMQWLVFELLWRDFFRFVTKKHGAAKKTQTEAVPAMAC 344
>gi|302793095|ref|XP_002978313.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
gi|300154334|gb|EFJ20970.1| hypothetical protein SELMODRAFT_108462 [Selaginella moellendorffii]
Length = 345
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/347 (61%), Positives = 267/347 (76%), Gaps = 14/347 (4%)
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
+P GA +RRASIVWFRNDLRVHDNE+L AN ES+SV+PVYCFDP+DYGKS+SGFDKTG
Sbjct: 11 NPAAGAGMRRASIVWFRNDLRVHDNEALAAANKESLSVIPVYCFDPKDYGKSASGFDKTG 70
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
PYRA FL+E V++LR NL+ RGS+LVVR+G P VL +AKA+GAD +YAH+EVS +E+
Sbjct: 71 PYRAKFLVECVANLRDNLRERGSELVVRIGNPVEVLSTIAKAVGADGLYAHQEVSSEELG 130
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL 294
E+K+ +A+KD+ ++VK+FWGSTL+H+DDLPFK+ +MP+NYGGFR+KVK V++R EA
Sbjct: 131 MEDKVTSALKDQNVDVKFFWGSTLFHVDDLPFKVEDMPSNYGGFRDKVKDVQVRAATEAP 190
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
QLKGLPS+GDV+ GDIPSL +LGLS +A G+ N M GGE EAL+RLK F+
Sbjct: 191 KQLKGLPSQGDVKAGDIPSLQELGLSPVSA------AGQHKRNRMIGGEVEALKRLKSFS 244
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ PP +K G +SIYGANFS KISPWLAMGCLSPR MF++LKKT + S
Sbjct: 245 --LVSPPP--SKGGKENSIYGANFSSKISPWLAMGCLSPRKMFEDLKKTTSRFVLDSLV- 299
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKV-VEAVPATAC 460
S S +G WL+FELLWRDFFRF+TKK+ +AKK EAVPA AC
Sbjct: 300 --ASTSGDSGMQWLVFELLWRDFFRFVTKKHGAAKKTQTEAVPAMAC 344
>gi|413955779|gb|AFW88428.1| hypothetical protein ZEAMMB73_274298 [Zea mays]
Length = 396
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/385 (53%), Positives = 271/385 (70%), Gaps = 20/385 (5%)
Query: 26 PSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLT---HISLSA 82
PS PFA+ S + S+ P TL S P+ + +PTQ STL H S +
Sbjct: 17 PSLLPFASFSFALSI----------RAPATPTLAS-VPSTIHLPTQISTLAVCLHPSAAQ 65
Query: 83 SSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAI-RRASIVWFRNDLRVHDNES 141
P++++ + +PL S + G R AA RR ++VWFR DLR+HD+E
Sbjct: 66 PLPRRPTRLNSATYSVISPLPSS-TPGLSRSFPSGAPAASGRRRTLVWFRADLRLHDHEP 124
Query: 142 LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
+ A S S+LPV+ FDPRD+GKS SGFD+TGPYRA+FL++SV+DLR++L+ARG DLVV
Sbjct: 125 FHAAAGASSSLLPVFVFDPRDFGKSPSGFDRTGPYRANFLLDSVADLRRSLRARGGDLVV 184
Query: 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261
RVG+PE V+ ELA+A GA+AVYAH EVS DEV++EE+++ A++ EGI VKYFWGSTLYH+
Sbjct: 185 RVGRPEVVIPELARAAGAEAVYAHGEVSRDEVRTEERVQKAVEKEGINVKYFWGSTLYHV 244
Query: 262 DDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQ 321
+DLPF+L +MP+NYGGFRE VK +++RK +EA +++K +P + +EPGDIP+L +LGL+
Sbjct: 245 EDLPFRLDDMPSNYGGFREAVKRLDVRKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTA 304
Query: 322 SAAMSQVWHGGKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSC 380
AM+Q KPA S + GGET AL+RLKKFAAE QP K +K DSIYGANFSC
Sbjct: 305 PPAMAQ---DSKPAVGSTLIGGETGALERLKKFAAECSMQPNKADKSNTQDSIYGANFSC 361
Query: 381 KISPWLAMGCLSPRSMFDELKKTAT 405
KISPWLA GCLSPR M++ELKK AT
Sbjct: 362 KISPWLATGCLSPRFMYEELKKHAT 386
>gi|168053729|ref|XP_001779287.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
patens]
gi|162669299|gb|EDQ55889.1| PHR2b AtPHR2-like CDP DNA photolyase [Physcomitrella patens subsp.
patens]
Length = 435
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/408 (48%), Positives = 273/408 (66%), Gaps = 45/408 (11%)
Query: 87 SPSKISFKST--LSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNT 144
+P+ +S KS +SA P L GP +P++ A +RRASIVWFRNDLR+HDNE+L +
Sbjct: 17 TPATVSKKSENYVSAFPEYQSLR-GPEFK-NPSSAAGLRRASIVWFRNDLRLHDNEALVS 74
Query: 145 ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204
A+ +S+S+LPVYCFDPRDYG SS G DK GPYR FL E V++LR +L+ RGSDL+VR+G
Sbjct: 75 ASRDSLSILPVYCFDPRDYGNSSLGIDKNGPYRVKFLFECVANLRSSLRERGSDLIVRIG 134
Query: 205 KPETVLVELAKAIGADAVYAHREVSHDEVK------------------------------ 234
KPE VL++LAK++GA+++YAH+EV++ E++
Sbjct: 135 KPEEVLLDLAKSVGAESLYAHQEVAYGELQEGDFVAISSNSYTPWLSHKGVAVKRSWNAL 194
Query: 235 ------SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++EK+ AA +D G+E K+FWG TL HL+DLPF+L +MP+NYGGFRE V+ + +R
Sbjct: 195 NRGPFQAQEKVAAAFQDNGVETKFFWGGTLVHLEDLPFELDDMPSNYGGFREMVQNLAVR 254
Query: 289 KTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQ 348
TIEAL +LKGLP+ G++EPG IP L +LGL+ +A M Q A + GGE EAL+
Sbjct: 255 STIEALQELKGLPACGNIEPGRIPFLQELGLNPAADMRQEIQTSGGAV--LMGGEDEALK 312
Query: 349 RLKKFAAEYQAQPPKGNK-DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
+L ++ E + K + + + DS+YGANFSCKISPWLA+GCLSPR MF++LKK+ +S
Sbjct: 313 KLDRYVLETSSSIAKNKQSETSADSLYGANFSCKISPWLALGCLSPRRMFEDLKKSRSSA 372
Query: 408 SAASKW--NDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVE 453
N +G+ NW++FELLWRDFFRFITKKY + +K E
Sbjct: 373 GVMPTLPVNTLGTGNEDHRLNWVLFELLWRDFFRFITKKYGTEEKFRE 420
>gi|147791052|emb|CAN68022.1| hypothetical protein VITISV_003623 [Vitis vinifera]
Length = 212
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 168/197 (85%), Positives = 187/197 (94%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
IRR+ VWFRNDLRVHDNE LN+A+NES+S+LPVYCFDPRDYGKSSSGFDKTGPYRASFL
Sbjct: 1 IRRSCXVWFRNDLRVHDNECLNSASNESMSMLPVYCFDPRDYGKSSSGFDKTGPYRASFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
IESVSDLR+NLQ RGSDLVVR+GKPETVLVELAKA+GADA+YAHREVSHDEVK EEKIEA
Sbjct: 61 IESVSDLRQNLQKRGSDLVVRIGKPETVLVELAKAVGADAIYAHREVSHDEVKGEEKIEA 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
AMK+EG+E KYFWGSTLYH+DDLPFK+ +MPTNYGGF+EKVKG+EIRKTI LDQL+GLP
Sbjct: 121 AMKEEGVEXKYFWGSTLYHVDDLPFKMEQMPTNYGGFKEKVKGLEIRKTIATLDQLRGLP 180
Query: 302 SRGDVEPGDIPSLLDLG 318
+RGDVE G+IPSLLDLG
Sbjct: 181 ARGDVEAGEIPSLLDLG 197
>gi|92429534|gb|ABD93511.2| DNA photolyase protein [Solanum tuberosum]
Length = 189
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 166/189 (87%), Positives = 183/189 (96%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFRNDLRVHDNE LN A+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DL
Sbjct: 1 WFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADL 60
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
RKNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+
Sbjct: 61 RKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGL 120
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
EVKYFWGSTLYH+DDLPFKL +MPTNYGGFREKV+G+E+RKTIEALDQLKGLP+RGDVEP
Sbjct: 121 EVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLKGLPARGDVEP 180
Query: 309 GDIPSLLDL 317
G+IPSL+DL
Sbjct: 181 GEIPSLVDL 189
>gi|92429526|gb|ABD93507.2| DNA photolyase protein [Solanum melongena]
Length = 187
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 164/187 (87%), Positives = 182/187 (97%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FRNDLRVHDNE LN ANNES+SVLPVYCFDPRDYGKSSSGFDKTGPYRA+FLIESV+DLR
Sbjct: 1 FRNDLRVHDNECLNAANNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVADLR 60
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
KNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+E
Sbjct: 61 KNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLE 120
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPG 309
VKYFWGSTLYH+DDLPFKL EMPTNYGGFREKV+G+EIRKT+EALDQ++GLP+RGDVEPG
Sbjct: 121 VKYFWGSTLYHIDDLPFKLEEMPTNYGGFREKVQGLEIRKTVEALDQMRGLPARGDVEPG 180
Query: 310 DIPSLLD 316
+IPSL+D
Sbjct: 181 EIPSLVD 187
>gi|92429524|gb|ABD93506.2| DNA photolyase protein [Solanum lycopersicum]
Length = 189
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 164/189 (86%), Positives = 183/189 (96%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFRNDLRVHDNE LN A+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLI+SV+DL
Sbjct: 1 WFRNDLRVHDNECLNAAHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADL 60
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
RKNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+
Sbjct: 61 RKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGL 120
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
EVKYFWGSTLYH+DDLPFKL +MPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVEP
Sbjct: 121 EVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEP 180
Query: 309 GDIPSLLDL 317
G+IPSL+DL
Sbjct: 181 GEIPSLVDL 189
>gi|92429522|gb|ABD93505.2| DNA photolyase protein [Physalis sp. TA1367]
Length = 190
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/190 (86%), Positives = 183/190 (96%)
Query: 128 VWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSD 187
VWFRNDLRVHDNE LN A+NES+SVLPVYCFDPRDYGKSSSGFDKTGPYRA+FLIESV+D
Sbjct: 1 VWFRNDLRVHDNECLNAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVAD 60
Query: 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG 247
L+KNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVS+DEVK EEKIE MKDEG
Sbjct: 61 LKKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEEKIEGVMKDEG 120
Query: 248 IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVE 307
++VK+FWGSTLYH+DDLPFKL MPTNYGGFREKVKG+EIRKTIEALDQ++GLP+RGDVE
Sbjct: 121 VDVKFFWGSTLYHVDDLPFKLEGMPTNYGGFREKVKGLEIRKTIEALDQMRGLPARGDVE 180
Query: 308 PGDIPSLLDL 317
PG+IPSL+DL
Sbjct: 181 PGEIPSLVDL 190
>gi|92429536|gb|ABD93512.2| DNA photolyase protein [Coffea canephora]
Length = 189
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 158/189 (83%), Positives = 184/189 (97%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFRNDLRVHDNE LN+ANNES+SVLPVYCFDPRDYGKSSSGFDKTGP+RA+FL+ESV+DL
Sbjct: 1 WFRNDLRVHDNECLNSANNESMSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLESVADL 60
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
RK LQA+GSDLVVR+GKPETVLVELA+A+GA+AVYAHREVSHDEVK+E+ IEA +K+EG+
Sbjct: 61 RKTLQAKGSDLVVRIGKPETVLVELAQAVGAEAVYAHREVSHDEVKAEDNIEAVLKEEGV 120
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
EVKYFWGSTLYH+DDLPFKL EMPTNYGGF+EKV+G+E+RKTIEALDQ+KGLP++GDVEP
Sbjct: 121 EVKYFWGSTLYHIDDLPFKLTEMPTNYGGFKEKVQGLEVRKTIEALDQVKGLPAKGDVEP 180
Query: 309 GDIPSLLDL 317
G+IPSL+DL
Sbjct: 181 GEIPSLVDL 189
>gi|92429532|gb|ABD93510.2| DNA photolyase protein [Capsicum annuum]
Length = 188
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 161/188 (85%), Positives = 180/188 (95%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FRNDLRVHDNE L A+NES+SVLPVYCFDPRDYGKSSSGFDKTGPYRA+FLIESV DLR
Sbjct: 1 FRNDLRVHDNECLXAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRATFLIESVKDLR 60
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
KNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVS+DEVK E+KI+A MKDEG++
Sbjct: 61 KNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIDAVMKDEGLD 120
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPG 309
VK+FWGSTLYHLDDLPFKL EMPTNYGGFREKV+G+E+RKTIEALDQL+G P+RGDVEPG
Sbjct: 121 VKFFWGSTLYHLDDLPFKLEEMPTNYGGFREKVQGLEVRKTIEALDQLRGFPARGDVEPG 180
Query: 310 DIPSLLDL 317
+IPSL+DL
Sbjct: 181 EIPSLVDL 188
>gi|93004444|gb|ABD93508.3| DNA photolyase protein [Petunia axillaris subsp. parodii]
Length = 181
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 155/181 (85%), Positives = 173/181 (95%)
Query: 138 DNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGS 197
D ES N A+NES SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLRKNLQARGS
Sbjct: 1 DKESFNAAHNESKSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDLRKNLQARGS 60
Query: 198 DLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGST 257
DLVVR+GKPETVLVELAKA+GA+AVYAHREVS+DEVK E+KIE+ MKDEG+EVK+FWGST
Sbjct: 61 DLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIESVMKDEGVEVKFFWGST 120
Query: 258 LYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDL 317
LYH+DDLPFKL EMPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVE G+IPSL+DL
Sbjct: 121 LYHVDDLPFKLEEMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVETGEIPSLVDL 180
Query: 318 G 318
G
Sbjct: 181 G 181
>gi|217074550|gb|ACJ85635.1| unknown [Medicago truncatula]
Length = 220
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 168/224 (75%), Positives = 191/224 (85%), Gaps = 5/224 (2%)
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
MK+E +EVKYFWGSTLYH++DLPF L +MP+NYGGFR++V+ +EIRKTIEALDQLKGLPS
Sbjct: 1 MKEENVEVKYFWGSTLYHVEDLPFGLEDMPSNYGGFRDRVQKLEIRKTIEALDQLKGLPS 60
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
RGDV+ GDIP+L+DLGL+ SA MSQ G + +SM GGETEALQRLK+FAAE +AQ
Sbjct: 61 RGDVQLGDIPTLMDLGLNPSAIMSQ--DGKQVPNSSMTGGETEALQRLKRFAAECEAQSN 118
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW-NDGESGSS 421
KG KDG DSIYGANFSCKISPWLAMGCLSPR+MFDELKKTA+S +AS NDG GSS
Sbjct: 119 KGFKDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDG--GSS 176
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
G+NWLMFELLWRDFFRFITKKYSS KK +EA PATACTGALA
Sbjct: 177 KTGTNWLMFELLWRDFFRFITKKYSSTKKQLEAAPATACTGALA 220
>gi|92429530|gb|ABD93509.2| DNA photolyase protein [Nicotiana tomentosiformis]
Length = 170
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 166/170 (97%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FRNDLRVHDNESLN A+NES+SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLR
Sbjct: 1 FRNDLRVHDNESLNAAHNESMSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVTDLR 60
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
KNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHREVS+DEVK E+KIE+ MKDEG+E
Sbjct: 61 KNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHREVSYDEVKGEDKIESVMKDEGVE 120
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
VKYFWGSTLYH+DDLPFKL EMPTNYGGFREKV+G+E+RKTIEALDQL+G
Sbjct: 121 VKYFWGSTLYHVDDLPFKLEEMPTNYGGFREKVQGLEVRKTIEALDQLRG 170
>gi|92429544|gb|ABD93516.2| DNA photolyase protein [Solanum habrochaites]
gi|92429552|gb|ABD93520.2| DNA photolyase protein [Solanum pennellii]
Length = 174
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 151/173 (87%), Positives = 169/173 (97%)
Query: 145 ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204
A+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLRKNLQARGSDLVVR+G
Sbjct: 2 AHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRIG 61
Query: 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL 264
KPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDL
Sbjct: 62 KPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDL 121
Query: 265 PFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDL 317
PFKL +MPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVEPG+IPSL+DL
Sbjct: 122 PFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVDL 174
>gi|92429554|gb|ABD93521.2| DNA photolyase protein [Solanum lycopersicoides]
Length = 173
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 150/172 (87%), Positives = 168/172 (97%)
Query: 145 ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204
A+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLRKNLQARGSDLVVR+G
Sbjct: 2 AHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRIG 61
Query: 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL 264
KPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDL
Sbjct: 62 KPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDL 121
Query: 265 PFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLD 316
PFKL +MPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVEPG+IPSL+D
Sbjct: 122 PFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVD 173
>gi|92429538|gb|ABD93513.2| DNA photolyase protein [Solanum chmielewskii]
Length = 173
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 149/172 (86%), Positives = 168/172 (97%)
Query: 145 ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204
A+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLI+SV+DLRKNLQARGSDLVVR+G
Sbjct: 2 AHNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIG 61
Query: 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL 264
KPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDL
Sbjct: 62 KPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDL 121
Query: 265 PFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLD 316
PFKL +MPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVEPG+IPSL+D
Sbjct: 122 PFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVD 173
>gi|92429546|gb|ABD93517.2| DNA photolyase protein [Solanum chilense]
Length = 173
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 149/172 (86%), Positives = 167/172 (97%)
Query: 145 ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204
+NES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLRKNLQARGSDLVVR+G
Sbjct: 2 GSNESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRIG 61
Query: 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL 264
KPETVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDL
Sbjct: 62 KPETVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDL 121
Query: 265 PFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLD 316
PFKL +MPTNYGGFREKV+G+E+RKTIEALDQL+GLP+RGDVEPG+IPSL+D
Sbjct: 122 PFKLEQMPTNYGGFREKVQGLEVRKTIEALDQLRGLPARGDVEPGEIPSLVD 173
>gi|224099353|ref|XP_002334490.1| predicted protein [Populus trichocarpa]
gi|222872649|gb|EEF09780.1| predicted protein [Populus trichocarpa]
Length = 230
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/231 (73%), Positives = 196/231 (84%), Gaps = 8/231 (3%)
Query: 1 MDPNKQNLEN--PENHSNEE--QNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKIS 56
MDP+ QNLE PE+ S ++ Q LA + S SPFAT SLS SLP +LP + FF QPKIS
Sbjct: 1 MDPHLQNLETTTPESTSEDQNQQQQLAIV-SSSPFATASLSLSLPTILPTH-FFTQPKIS 58
Query: 57 TLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDP 116
+LFS P K K+PTQA++LTH+SL++S++ K+SFKST+SANPL +PL+LGP RP DP
Sbjct: 59 SLFSSPPTKAKIPTQATSLTHLSLTSSTSSP--KLSFKSTISANPLHTPLTLGPRRPSDP 116
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
+N A RRA IVWFRNDLRVHDNE LN+ANN+S+SVLPVYCFDPRDYGKSSSGFDKTGPY
Sbjct: 117 SNAAGTRRACIVWFRNDLRVHDNECLNSANNDSMSVLPVYCFDPRDYGKSSSGFDKTGPY 176
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE 227
RA+FLIESVSDLRKNLQARGSDLVVRVG+PETVLVELAKAIGADAVYAHR+
Sbjct: 177 RANFLIESVSDLRKNLQARGSDLVVRVGRPETVLVELAKAIGADAVYAHRD 227
>gi|297743900|emb|CBI36870.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 146/195 (74%), Positives = 161/195 (82%), Gaps = 5/195 (2%)
Query: 271 MPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWH 330
MPTNYGGF+EKVKG+EIRKTI LDQL+GLP+RGDVE G+IPSLLDLGLS SA + Q +
Sbjct: 1 MPTNYGGFKEKVKGLEIRKTIATLDQLRGLPARGDVEAGEIPSLLDLGLSPSATLPQ--N 58
Query: 331 GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGC 390
G A S+ GGETEALQRLKKFAAE QAQPPKG +DSIYGANFSCKISPWLAMGC
Sbjct: 59 GMSTANGSLVGGETEALQRLKKFAAECQAQPPKG---AANDSIYGANFSCKISPWLAMGC 115
Query: 391 LSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
LSPRSMFDE+KK+A+ +AS DG SG S G NWLMFEL+WRDFFRFITKKYSSA K
Sbjct: 116 LSPRSMFDEIKKSASRTISASTSKDGGSGQSDTGMNWLMFELMWRDFFRFITKKYSSATK 175
Query: 451 VVEAVPATACTGALA 465
V+A PATACTGALA
Sbjct: 176 QVDAAPATACTGALA 190
>gi|384246200|gb|EIE19691.1| DNA photolyase [Coccomyxa subellipsoidea C-169]
Length = 407
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 153/334 (45%), Positives = 215/334 (64%), Gaps = 32/334 (9%)
Query: 116 PNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGP 175
P G A RRA+++WFRNDLRVHDNE+L AN +S S+LPVYCFDPR+Y S +G + TGP
Sbjct: 77 PFAGGA-RRAAVMWFRNDLRVHDNEALAIANRDSSSLLPVYCFDPREYSSSGNGINSTGP 135
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
YRA F++++V +LR +L+A GSDL+VR+GKPE VL +LAK +GA V+ H EV+++E +
Sbjct: 136 YRAQFIVDAVMELRNSLRAIGSDLIVRIGKPEEVLTDLAKKVGASKVFCHSEVTYEEDLT 195
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALD 295
E+++ AA+K E I++K WGSTLY DDLPFKLG++P +G FR KV + +++ +A
Sbjct: 196 EKQVAAALKVEDIQLKASWGSTLYSPDDLPFKLGDLPATHGEFRSKVASLAVKQPEKAPA 255
Query: 296 QLKGLP--SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF 353
QLKG P S+G + GDIP+L LGL +S + P A +GGE+E L +L +
Sbjct: 256 QLKGKPVGSQG-ISSGDIPTLAQLGLQ---PLSNI-----PGAPKCRGGESEGLAQLNRL 306
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
+ + G+ A FS ++SPWLA+GCLSPR M+ E++ S
Sbjct: 307 LSRTSMKAGPGSN-------ISAAFSNEVSPWLALGCLSPRRMYAEVQARQAS------- 352
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
S+ + + EL+WRDFFRF KKY+S
Sbjct: 353 ------SNPTVVSLMHAELIWRDFFRFTAKKYAS 380
>gi|92429548|gb|ABD93518.2| DNA photolyase protein [Solanum peruvianum]
Length = 150
Score = 286 bits (733), Expect = 1e-74, Method: Composition-based stats.
Identities = 133/150 (88%), Positives = 146/150 (97%)
Query: 148 ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPE 207
ES+SVL VYCFDPRDYGKSSSGFDKTGPYRASFLIESV+DLRKNLQARGSDLVVR+GKPE
Sbjct: 1 ESMSVLAVYCFDPRDYGKSSSGFDKTGPYRASFLIESVADLRKNLQARGSDLVVRIGKPE 60
Query: 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK 267
TVLVELAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDLPFK
Sbjct: 61 TVLVELAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFK 120
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
L +MPTNYGGFREKV+G+E+RKTIEALDQL
Sbjct: 121 LEQMPTNYGGFREKVQGLEVRKTIEALDQL 150
>gi|159469690|ref|XP_001692996.1| CPH-like protein [Chlamydomonas reinhardtii]
gi|158277798|gb|EDP03565.1| CPH-like protein [Chlamydomonas reinhardtii]
Length = 443
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 165/373 (44%), Positives = 230/373 (61%), Gaps = 49/373 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSS----------SGFDKT 173
+A++VWFRNDLR+HDN +L A +S SVLPVY FDPRDYGK+ SGFD+T
Sbjct: 42 KAALVWFRNDLRLHDNPALEQACRQSSSVLPVYVFDPRDYGKAGYSVCLLPQTPSGFDRT 101
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
GP RA FL+E+V+DLR+ L+ GSDLVVR+G+PE VL ELA A+GA AVY EV+ +E+
Sbjct: 102 GPGRARFLLEAVADLRQRLRDAGSDLVVRLGRPEAVLKELAAAVGAGAVYCQSEVTAEEM 161
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+ E ++ AA+ E E++ WG TL+HL+DLPF+L MPT+Y FRE+V +++R+ E+
Sbjct: 162 QVEGRVRAALDRESCELRPQWGGTLFHLEDLPFRLDAMPTSYADFRERVANLKVRQLSES 221
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLS-----------QSAAMSQVWHGGKPAANSMKGG 342
+KGLP+ VEPGDIP+L LG S S + + GG PA ++GG
Sbjct: 222 DGGIKGLPAGNSVEPGDIPTLQRLGFSPAAATAGAAAPGSGLGAPLQLGGGPAL-VLRGG 280
Query: 343 ETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYG-----ANFSCKISPWLAMGCLSPRSMF 397
E+EAL+ ++ F E + + G A FSC+ISPWLA+GCLSPR M+
Sbjct: 281 ESEALRHMQAFIDELRRAVSGAAAAASGSGKPGAAPPSATFSCRISPWLALGCLSPRRMY 340
Query: 398 DELKK----------------------TATSISAASKWNDGESGSSGAGSNWLMFELLWR 435
E+++ A +S +K +G +G+ +NWL+FELLWR
Sbjct: 341 HEMRQQLAPAGAPVIRSSSSSAIGSGSAAAPLSGPAKQGGAAAGGAGSPANWLVFELLWR 400
Query: 436 DFFRFITKKYSSA 448
DFFRF+T+K+S+
Sbjct: 401 DFFRFVTQKHSAG 413
>gi|307110914|gb|EFN59149.1| hypothetical protein CHLNCDRAFT_56756 [Chlorella variabilis]
Length = 444
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/335 (48%), Positives = 216/335 (64%), Gaps = 14/335 (4%)
Query: 116 PNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGP 175
P GA RR IVWFR DLR+HDNE+L A E S+LPVYCFDPR+YGKS G+DKTGP
Sbjct: 101 PGCGAG-RRPGIVWFRGDLRLHDNEALARAQAECSSLLPVYCFDPREYGKSPQGYDKTGP 159
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
YRA FL E+V+DLR L+A GS+LVVRVG+PE V+ EL + GA AVY H EV+++++++
Sbjct: 160 YRAQFLAEAVADLRAALRAAGSELVVRVGRPEEVVGELVRRTGAGAVYCHTEVAYEDLRA 219
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALD 295
E + AA + G ++ +W +TL HLDDLPF L ++P N+ FRE++ GV +R + A
Sbjct: 220 EAAVRAAAEAGGARLRAYWANTLCHLDDLPFSLDQLPQNFDKFREQIGGVAVRAALPAPQ 279
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLS---QSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
+L GLP G V+PGDIP+L LGL +AA + GG P +GGE EAL++L++
Sbjct: 280 ELHGLPLGGRVDPGDIPTLEQLGLQPLPAAAATGSIGEGGSP-----RGGEGEALRQLQR 334
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
F A Q G H S NFS I+PWLA GCLSPR M ++ ++ + +AA
Sbjct: 335 FVAAAGGQAAAGPVAAAHGS----NFSANIAPWLATGCLSPRRMLEDARRALAAPTAAGA 390
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
S A W+ FEL WRDFFR +++KYSS
Sbjct: 391 -TPAASRPLQAPLEWVRFELYWRDFFRLLSRKYSS 424
>gi|92429540|gb|ABD93514.2| DNA photolyase protein [Solanum pimpinellifolium]
Length = 150
Score = 285 bits (728), Expect = 4e-74, Method: Composition-based stats.
Identities = 132/150 (88%), Positives = 147/150 (98%)
Query: 159 DPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
DPRDYGKSSSGFDKTGPYRASFLI+SV+DLRKNLQARGSDLVVR+GKPETVLVELAKA+G
Sbjct: 1 DPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVELAKAVG 60
Query: 219 ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF 278
A+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDLPFKL +MPTNYGGF
Sbjct: 61 AEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGF 120
Query: 279 REKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
REKV+G+E+RKTIEALDQL+GLP+RGDVEP
Sbjct: 121 REKVQGLEVRKTIEALDQLRGLPARGDVEP 150
>gi|452822894|gb|EME29909.1| photolyase/blue-light receptor [Galdieria sulphuraria]
Length = 444
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 149/344 (43%), Positives = 216/344 (62%), Gaps = 30/344 (8%)
Query: 113 PLDPNNGAAIRRAS-----IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSS 167
PL N G + +A IVWFRNDLR+HDN +L A E +LPVYCFDPR +GK+S
Sbjct: 99 PLGENFGESAGQAYKGSKIIVWFRNDLRLHDNPALFRAAEEGSLILPVYCFDPRQFGKTS 158
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE 227
GF+KTG YRA FLI+SV DLRK+ +A+GSDL+VR+G+PE VL EL + G V+ HRE
Sbjct: 159 FGFEKTGRYRAQFLIDSVEDLRKSFRAKGSDLIVRLGRPEEVLPELCRQTGCKRVFCHRE 218
Query: 228 VSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVE 286
V+++++ EE + A++ G+E+ W +TLY +DLPF++ MP Y FRE V+ G +
Sbjct: 219 VTYEDLIVEEDVGDALESIGVEMTLLWSNTLYQAEDLPFQVENMPDIYTKFRESVETGGK 278
Query: 287 IRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKP-AANSMKGGETE 345
IR E L+ + P R EPG+IP+L +LGL A+ ++ P + + +GGE+E
Sbjct: 279 IR---EPLELSEAFPPRPRCEPGEIPTLTELGL--DASPERIPGESNPRSIHGFRGGESE 333
Query: 346 ALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT 405
+L+R++ + +E ++ G + GA+FSCKISPWLA+GC+SPR ++ E
Sbjct: 334 SLKRMEDYLSEMRSTEISSTTAGAY---LGADFSCKISPWLALGCISPRKIYHE------ 384
Query: 406 SISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAK 449
++ +S D + FEL+WRDFFRFIT+KY + +
Sbjct: 385 -VNGSSVPEDVRKTT--------YFELVWRDFFRFITQKYGNIR 419
>gi|92429542|gb|ABD93515.2| DNA photolyase protein [Solanum arcanum]
Length = 145
Score = 279 bits (714), Expect = 2e-72, Method: Composition-based stats.
Identities = 128/145 (88%), Positives = 141/145 (97%)
Query: 153 LPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVE 212
L VYCFDPRDYGKSSSGFDKTGPYRASFLI+SV+DLRKNLQARGSDLVVR+GKPETVLVE
Sbjct: 1 LAVYCFDPRDYGKSSSGFDKTGPYRASFLIDSVADLRKNLQARGSDLVVRIGKPETVLVE 60
Query: 213 LAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMP 272
LAKA+GA+AVYAHREVSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDLPFKL +MP
Sbjct: 61 LAKAVGAEAVYAHREVSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMP 120
Query: 273 TNYGGFREKVKGVEIRKTIEALDQL 297
TNYGGFREKV+G+E+RKTIEALDQL
Sbjct: 121 TNYGGFREKVQGLEVRKTIEALDQL 145
>gi|449015791|dbj|BAM79193.1| probable photolyase/blue-light receptor [Cyanidioschyzon merolae
strain 10D]
Length = 438
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 142/338 (42%), Positives = 209/338 (61%), Gaps = 25/338 (7%)
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
NG + ++WFR+DLR+ DN +L A E SVLPVYCFDPR +GK+S GF+KTG Y
Sbjct: 97 KNGGTV----LLWFRSDLRLDDNPALCAALEEGASVLPVYCFDPRQFGKTSFGFEKTGRY 152
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FLIESV+DLRK L+ +G++L++R+GKPE V+ +L + V+ H+EV+++E++ E
Sbjct: 153 RAKFLIESVADLRKALKKKGNNLLIRIGKPEEVIPDLCRKYEIKKVFYHQEVTYEELECE 212
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALD 295
E + ++D +EV FW +TLY ++DLPF + E P Y +R V+ +R + A D
Sbjct: 213 EAVARKLEDMKVEVHPFWTNTLYAVEDLPFPVEETPDVYTEYRLAVESKSRVRDPLAAPD 272
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS----MKGGETEALQRLK 351
+++ +P VE G +P+L DLGL Q + +G A S +GGE+EA QRL
Sbjct: 273 EIRAIPR--HVEYGTLPTLEDLGLGQVPKTPE--YGSASTAGSSLHHFRGGESEAQQRLA 328
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
++ + + G + GA+FSCKISPWLA+GC+SPR +F E++ A
Sbjct: 329 QYVQDAKHALSVGGDVERAAAHLGADFSCKISPWLALGCVSPRRIFAEIRDHAL------ 382
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAK 449
+G+ GA + FEL+WRDFFR IT KYS+++
Sbjct: 383 ------NGAEGAQKSTTFFELVWRDFFRLITYKYSTSR 414
>gi|428225294|ref|YP_007109391.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
gi|427985195|gb|AFY66339.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Geitlerinema sp. PCC 7407]
Length = 498
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 200/322 (62%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR+HD+E L A + ++ PVYCFDPR +GK+ GF KTG +RA FL+ESV+
Sbjct: 7 LLWFRNDLRLHDHEPLQRALKQKTAIAPVYCFDPRHFGKTPYGFPKTGAFRAQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR +LQ RGSDL+VRVGKPE V+ +A+ +GA AVY H E + +E+ EE++ A+KD+
Sbjct: 67 DLRASLQKRGSDLIVRVGKPEEVVPAIARDLGATAVYFHEEATAEEIAVEERLIQALKDQ 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPSRGD 305
G + FWG+TLY DDLPF E+P + FR++V+ ++R + K LP+ G
Sbjct: 127 GTAHQSFWGATLYAPDDLPFGTDEIPEVFTQFRKRVESQSDVRSPFAS---PKALPALGA 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+ G++P+L DLGL + K + +GGET L RL+ + +Q+
Sbjct: 184 IALGELPTLADLGLEPPSP-------DKRGVLAFRGGETAGLARLQHYF--WQSDRLSVY 234
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ + + GA++S K SPWLA+GCLSPR + D++ +A ND +
Sbjct: 235 KE-TRNGMLGADYSSKFSPWLALGCLSPRYIHDQVLTYEDDRTA----ND--------ST 281
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRD+FRFI K+ +
Sbjct: 282 YWLIFELLWRDYFRFICLKHGN 303
>gi|434399467|ref|YP_007133471.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
gi|428270564|gb|AFZ36505.1| cryptochrome, DASH family [Stanieria cyanosphaera PCC 7437]
Length = 488
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 202/326 (61%), Gaps = 26/326 (7%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ ++WFRNDLR+HD++ + A E ++PVYCFD R++ ++S GF KTG YRA FL+
Sbjct: 3 KQRILIWFRNDLRLHDHKPIYQAVQEQAQIIPVYCFDQREFKQTSFGFPKTGNYRAQFLL 62
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
ESV+DL+K+LQ GSDL++ G PE ++ LA+ + D+VY H+EV+ +E+K E+ ++
Sbjct: 63 ESVADLKKSLQKLGSDLIIYWGFPEQIIPHLAQKLKIDSVYYHQEVTAEELKVEQALKQE 122
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLP 301
++ I+V FWG+TLY +DLPF++ ++P Y FR K VE + TIE L K LP
Sbjct: 123 LQKLKIQVNSFWGATLYLTEDLPFEISQIPELYTNFR---KQVEAKSTIENPLPTPKELP 179
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
S +E G IP + DLGL+ K A + KGGETEAL RL ++ +Q
Sbjct: 180 SLPSIELGQIPQISDLGLTTPIF-------DKRAVLNFKGGETEALTRLNQYF--WQLDC 230
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K K+ + + GAN+S K SPWLA GC+SPR ++++++K T ND
Sbjct: 231 LKEYKE-TRNGMLGANYSSKFSPWLARGCISPRYIYEQVQKYETKRIK----ND------ 279
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL+WRDFF FI K+ +
Sbjct: 280 --STYWLIFELIWRDFFHFICAKHGN 303
>gi|217074548|gb|ACJ85634.1| unknown [Medicago truncatula]
Length = 235
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/155 (80%), Positives = 141/155 (90%), Gaps = 1/155 (0%)
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFK-STLSANPLQSPLSLGPHRPLDPNNGAAIR 123
K+KVPTQAS+LTH+SLS + SPS +FK S+ S+NPL+SPLSL PHRP DP++ AA+R
Sbjct: 58 KLKVPTQASSLTHLSLSTKTHSSPSNKTFKKSSFSSNPLKSPLSLIPHRPNDPSSAAALR 117
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +IVWFRNDLRVHDNE+LNTANNES+SVLPVYCFDP DYGKSSSGFDKTGPYRASFLIE
Sbjct: 118 RTAIVWFRNDLRVHDNEALNTANNESISVLPVYCFDPADYGKSSSGFDKTGPYRASFLIE 177
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
S+SDLRKNL+ARGSDLVVRVGKPETVLVELAK +G
Sbjct: 178 SISDLRKNLKARGSDLVVRVGKPETVLVELAKKLG 212
>gi|119486492|ref|ZP_01620550.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
gi|119456394|gb|EAW37525.1| probable bacterial cryptochrome [Lyngbya sp. PCC 8106]
Length = 515
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/347 (39%), Positives = 198/347 (57%), Gaps = 26/347 (7%)
Query: 102 LQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR 161
L S +S+ ++ G + ++W+RNDLRVHD+E L+ A ++PVYCFDPR
Sbjct: 4 LNSDISVNICNEVNSGQGKMSDKRVLIWYRNDLRVHDHEPLHLAVKAQAEIIPVYCFDPR 63
Query: 162 DYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA 221
+GK+S GF KTG +RA FL+ESV+DLR +L+ GSDL+VR PETV+ EL K +G D
Sbjct: 64 QFGKTSFGFPKTGVFRAQFLLESVTDLRNSLRKLGSDLIVRYDFPETVIPELVKQLGIDE 123
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK 281
VY +REV+ +E+ E +E A+ + +K +WG+TLY LDDLPF + +P + FR
Sbjct: 124 VYYYREVTSEELAVETTLEKALNPLDVSLKSYWGATLYDLDDLPFSINRIPEVFTQFR-- 181
Query: 282 VKGVEIRKTIEA-LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK 340
K VE TI A + LP +E G++P+L LGL ++ Q + +
Sbjct: 182 -KQVEKNGTIYASFPTPQRLPILPQIEVGELPTLQKLGL-ETPQFDQ------RSVLKFQ 233
Query: 341 GGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL 400
GGET + RL + E Q + + + GAN+S K SPWLA+GCLSPR ++D +
Sbjct: 234 GGETAGISRLTDYIWE---QDCLKDYKQTRNGMLGANYSSKFSPWLALGCLSPRFIYDHV 290
Query: 401 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ E + WL+FELLWRD+FRFI K+ +
Sbjct: 291 QDYE------------EQRVKNDSTYWLVFELLWRDYFRFICLKHGN 325
>gi|209524800|ref|ZP_03273346.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|376007766|ref|ZP_09784952.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|423063001|ref|ZP_17051791.1| cryptochrome DASH family [Arthrospira platensis C1]
gi|209494679|gb|EDZ94988.1| cryptochrome, DASH family [Arthrospira maxima CS-328]
gi|375323871|emb|CCE20705.1| Cryptochrome DASH [Arthrospira sp. PCC 8005]
gi|406715580|gb|EKD10734.1| cryptochrome DASH family [Arthrospira platensis C1]
Length = 486
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 195/326 (59%), Gaps = 24/326 (7%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA + I+W+R+DLR+HD+E L+ A + ++P+YCFDPR + K+S GF K G +R
Sbjct: 2 AANPQKIILWYRHDLRLHDHEPLDLATSTQAQIIPLYCFDPRQFAKTSFGFPKMGGFRGK 61
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL+ESV+DLR NLQ GS+L+VR+G+PETV+ +L K + DAVY H+EV+ +E+ E +
Sbjct: 62 FLLESVADLRHNLQKIGSNLLVRIGEPETVIFDLVKQLNIDAVYYHKEVTTEELAVERAL 121
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E A+ G+EVK FWG+TLYH +LPF + ++P + FR++V+ I K
Sbjct: 122 EKALTPLGVEVKSFWGATLYHPKELPFPIEKLPELFTNFRKQVEKKSI--IYPPYTPPKQ 179
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LP+ D+EPG+IP+L +LG+++ S+ A GGET L RL + +
Sbjct: 180 LPTFPDIEPGEIPTLAELGITKLPFDSR-------AVLDFVGGETAGLTRLNDY---FWQ 229
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
+ N + + G+++S K SPWLA GCLSPR ++ ++ +
Sbjct: 230 RDCLKNYKQTRNGMLGSDYSSKFSPWLANGCLSPRWIYQQVCDYE------------QQR 277
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKY 445
+ WL+FELLWRD+FRFI K+
Sbjct: 278 VKNDSTYWLVFELLWRDYFRFICLKH 303
>gi|126658972|ref|ZP_01730114.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
gi|126619770|gb|EAZ90497.1| probable bacterial cryptochrome [Cyanothece sp. CCY0110]
Length = 486
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 198/323 (61%), Gaps = 28/323 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E L E V+P YCFD R + +S F KTG +R FL+ESV+
Sbjct: 7 LIWYRNDLRIHDHEPLYQGIKEGDLVIPFYCFDIRQFQTTSYAFPKTGNFRGQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++LQ GSDL+VR G PE ++ EL K + DAVY H EV+ +E K E+K++ A+K
Sbjct: 67 NLRQSLQDLGSDLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETKVEKKVKQALKPL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
++V FWG+TLYH +DLPF++ ++P + FR+KV K + T+ +L LP D
Sbjct: 127 KVKVPGFWGATLYHWNDLPFEVNQLPEVFTSFRKKVEKNSTVNPTLITPRKLLSLP---D 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKG 364
VE G+IPSL +LGL +S + S+ + KGGET ++RL+ + E + K
Sbjct: 184 VEIGNIPSLEELGLKKSDSDSR-------GVLNFKGGETAGIKRLQDYFWERNCLKEYKE 236
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + GA++S K SPWLA GCLSPR +++E++K E
Sbjct: 237 TRNG----MLGADYSSKFSPWLAHGCLSPRYIYEEVQKYE------------EERVKNNS 280
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRD+FRFI K+ +
Sbjct: 281 TYWLIFELLWRDYFRFICAKHGN 303
>gi|443477859|ref|ZP_21067672.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
gi|443016926|gb|ELS31485.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena biceps PCC 7429]
Length = 497
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 195/327 (59%), Gaps = 31/327 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNES----VSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
+VWFRNDLR+HD E L+ A S V P YCFDP +GK+S GF+KTG +RA FLI
Sbjct: 7 LVWFRNDLRLHDCEILSLAAEASKRMNAEVFPFYCFDPYHFGKTSFGFEKTGAFRAKFLI 66
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
ESV DLR NL++ SDL+VR+GKPE +L EL + +G ++Y RE++ +E E ++ +
Sbjct: 67 ESVIDLRANLRSLNSDLIVRIGKPELILPELTQQLGLTSIYYQREIATEETSLERRLHSI 126
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLP 301
+ ++ K FWG TL H DDLPF + +P + FR++V+ + IR+ +D+L LP
Sbjct: 127 FTKQNVDFKGFWGKTLIHCDDLPFAIAHLPELFTHFRKQVEANLIIREPFPLVDRLPALP 186
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-FAAEYQAQ 360
D+ G+IP L LGL + ++ A +GGET A++RL F A + Q
Sbjct: 187 PSIDI--GEIPHLTQLGLEEFLPCAR-------AKFQFRGGETAAIERLNHYFWASDRLQ 237
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G ++ + S K SPWLA+GCLSPR ++ ++KK + A ND
Sbjct: 238 VYKQTRNGMLET----DDSSKFSPWLALGCLSPRYIYAQIKKYESDRLA----ND----- 284
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRD+F F+T KY +
Sbjct: 285 ---STYWLIFELLWRDYFHFVTAKYGN 308
>gi|67925725|ref|ZP_00519034.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67852431|gb|EAM47881.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 486
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 194/323 (60%), Gaps = 28/323 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E L A + ++P YCFD R + +S GF KTG +R FL+ESV+
Sbjct: 7 LIWYRNDLRIHDHEPLYQAIKQGALIIPFYCFDIRQFKTTSFGFPKTGNFRGQFLLESVT 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL+K+LQ GS+L++R G PE ++ EL K + DAVY H EV+ +E E +E A+K
Sbjct: 67 DLKKSLQDLGSNLIIRQGYPEKIIPELIKQLEIDAVYFHEEVTSEETDIENTVEKALKPL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+ K FWG+TLYH DDLPF++ ++P + FR+KV K + + + +L+ LP D
Sbjct: 127 NVTFKGFWGATLYHWDDLPFEVSKLPEVFTSFRKKVEKNSTVNPILISPRKLRSLP---D 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKG 364
+E G++PSL +L L + S+ KGGETE +QRL + E + K
Sbjct: 184 IEVGNVPSLEELELEKPKYDSR-------GVLEFKGGETEGIQRLNNYFWERNCLKEYKE 236
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + GA++S K SPWLA GCLSPR +++E++K E
Sbjct: 237 TRNG----MLGADYSSKFSPWLANGCLSPRYIYEEVQKYE------------EKRIKNNS 280
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRD+FRFI+ K+ +
Sbjct: 281 TYWLIFELLWRDYFRFISAKHGN 303
>gi|409991103|ref|ZP_11274395.1| DASH family cryptochrome [Arthrospira platensis str. Paraca]
gi|291567701|dbj|BAI89973.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
gi|409938041|gb|EKN79413.1| DASH family cryptochrome [Arthrospira platensis str. Paraca]
Length = 490
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 196/327 (59%), Gaps = 26/327 (7%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA + I+W+RNDLR+HD+E L+ A + ++P+YCFDPR + K+S GF KTG +R
Sbjct: 2 AANPQKIILWYRNDLRLHDHEPLDLATSTQGQIIPLYCFDPRQFAKTSFGFPKTGGFRGK 61
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL+ESV+DLR N Q GS+L+VR+G+PE V+ +L K + DAVY H+EV+ +E+ E +
Sbjct: 62 FLLESVADLRHNFQKIGSNLLVRIGEPERVIFDLVKQLNIDAVYYHKEVTAEELAVETAL 121
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE-IRKTIEALDQLK 298
E A+ G+EVK FWG+TLYHL +LPF + ++P + FR++V+ I +QL
Sbjct: 122 EKALTPLGVEVKSFWGATLYHLKELPFPIEKLPELFTNFRKQVEQKSVIYPPYTPPNQLP 181
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
P D+EPG+IP+L +LG++ + + + GGET L RL + +
Sbjct: 182 QFP---DIEPGEIPTLTELGITPAPFDER-------SVLDFAGGETAGLSRLNDY---FW 228
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ N + + G+++S K SPWLA GCLSPR ++ +++ ND
Sbjct: 229 RRDCLKNYKQTRNGMLGSDYSSKFSPWLANGCLSPRWIYQQVQDYQHQRVK----ND--- 281
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKY 445
+ WL+FELLWRD+FRFI K+
Sbjct: 282 -----STYWLVFELLWRDYFRFICLKH 303
>gi|92429550|gb|ABD93519.2| DNA photolyase protein [Solanum cheesmaniae]
Length = 130
Score = 247 bits (631), Expect = 8e-63, Method: Composition-based stats.
Identities = 113/130 (86%), Positives = 127/130 (97%)
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE 227
SGFDKTGPYRASFLI+S++DLRKNLQARGSDLVVR+GKPETVLVELAKA+GA+AVYAHRE
Sbjct: 1 SGFDKTGPYRASFLIDSIADLRKNLQARGSDLVVRIGKPETVLVELAKAVGAEAVYAHRE 60
Query: 228 VSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI 287
VSHDEVK E+KI+A MKDEG+EVKYFWGSTLYH+DDLPFKL +MPTNYGGFREKV+G+E+
Sbjct: 61 VSHDEVKGEDKIDAVMKDEGLEVKYFWGSTLYHVDDLPFKLEQMPTNYGGFREKVQGLEV 120
Query: 288 RKTIEALDQL 297
RKTIEALDQL
Sbjct: 121 RKTIEALDQL 130
>gi|113477930|ref|YP_723991.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110168978|gb|ABG53518.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 498
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 192/322 (59%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+W+RNDLR+HD+E L A + ++P+YC DPR + ++ GF KTG +RA FL+ES++
Sbjct: 7 ILWYRNDLRIHDHEPLYKALKVNAQIIPIYCLDPRQFSQTDFGFPKTGVFRAKFLLESIA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR NLQ GS+LV+ KPE V+ LA+ + A +V+ H+EV+ EVK E + A+K
Sbjct: 67 DLRNNLQKLGSNLVIFQDKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVERLVHQALKQI 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
G+ +K FWG TLYH DDLPF++ ++P + FR+ V K + T +L LP
Sbjct: 127 GVRLKSFWGHTLYHPDDLPFEIKQLPELFTTFRKDVEKNSSVNPTFSIPKKLSSLPK--- 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G++P+L DL L + SQ KGGET A +R+K + +Q K
Sbjct: 184 IDVGELPTLSDLNLEKPPLNSQ-------GVLEFKGGETAAKERVKNYF--WQQDYLKVY 234
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ + + GAN+S K SPWLA+GCLSPR +++E+K+ +
Sbjct: 235 KE-TRNGMLGANYSSKFSPWLALGCLSPRYIYEEVKEYEY------------QRVKNQST 281
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FEL+WRD+FRFI +K+ +
Sbjct: 282 YWLIFELIWRDYFRFICQKHGN 303
>gi|428203429|ref|YP_007082018.1| DASH family cryptochrome [Pleurocapsa sp. PCC 7327]
gi|427980861|gb|AFY78461.1| cryptochrome, DASH family [Pleurocapsa sp. PCC 7327]
Length = 488
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 131/323 (40%), Positives = 198/323 (61%), Gaps = 28/323 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HDN+ + A E ++PVYCFD R + ++ GF KTG +RA FL ESV+
Sbjct: 7 LIWYRNDLRIHDNKLIYQALKEKAQIIPVYCFDKRQFVQTYFGFPKTGKFRAQFLRESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR +LQ GS+L+VR+G PE ++ LA+ + DAVY H EV+ +E+ E+ ++ A+
Sbjct: 67 DLRNSLQKLGSNLIVRLGFPEKIIPALAQELNIDAVYYHEEVTSEELAVEKSLKKALSQI 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSRGD 305
G++V FWG+TLYH D+LPFK+ ++P + FR K +E + TI+ L + LP
Sbjct: 127 GVKVNSFWGATLYHPDNLPFKIHQIPELFTNFR---KQLEKKSTIDPTLPSPQKLPPLPK 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKG 364
VEPG+IP LL+LG+ + + A +GGET+ L RL + E + K
Sbjct: 184 VEPGEIPQLLELGIEELIF-------DERAVLKFQGGETKGLVRLHNYFWEKDCLRTYKE 236
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + G ++S K SPWLA+GCLSPR ++++++K + ND
Sbjct: 237 TRNG----MLGLDYSSKFSPWLALGCLSPRLIYEQVQKYESERIK----ND--------S 280
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL+WRDFFRFI K+ +
Sbjct: 281 TYWLVFELMWRDFFRFICAKHGN 303
>gi|172039222|ref|YP_001805723.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354552505|ref|ZP_08971813.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
gi|171700676|gb|ACB53657.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353555827|gb|EHC25215.1| cryptochrome, DASH family [Cyanothece sp. ATCC 51472]
Length = 491
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 129/323 (39%), Positives = 199/323 (61%), Gaps = 28/323 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E + A E ++P+YCFD R + +S GF KTG +R FL+ESV+
Sbjct: 12 LIWYRNDLRIHDHEPMYQAIKEGALIIPLYCFDIRQFKTTSYGFPKTGNFRGQFLLESVA 71
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++LQ GS+L+VR G PE ++ EL K + DAVY H EV+ +E E++++ A+K
Sbjct: 72 NLRQSLQDLGSNLIVRKGYPEKIIPELIKELEIDAVYFHEEVTSEETTVEKEVKQALKPL 131
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
++V+ FWGSTLYH DDLPF++ ++P + FR+KV K + T+ +L P +
Sbjct: 132 KVKVQGFWGSTLYHWDDLPFEVNQLPEVFTSFRKKVEKSSTVNPTLITPIKLLPFP---N 188
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKG 364
+E G IP+L +LGL + S+ + KGGET ++RLK++ E + K
Sbjct: 189 IELGKIPTLEELGLEKPDYHSR-------GMLNFKGGETGGIKRLKEYFWERNCLKEYKE 241
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + GA++S K SPWLA GCLSPR +++E++K ++
Sbjct: 242 TRNG----MLGADYSSKFSPWLAQGCLSPRYIYEEVQKYE------------DARVKNNS 285
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRD+FRFI K+ +
Sbjct: 286 TYWLIFELLWRDYFRFICAKHGN 308
>gi|218245570|ref|YP_002370941.1| DASH family cryptochrome [Cyanothece sp. PCC 8801]
gi|218166048|gb|ACK64785.1| cryptochrome, DASH family [Cyanothece sp. PCC 8801]
Length = 488
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 196/321 (61%), Gaps = 24/321 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD++ + A + ++P YCFD R + +S GF KTG +++ FL++S+
Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKQKAQIIPFYCFDNRQFKTTSFGFPKTGNFKSQFLLQSID 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LRKNLQ GS+LVVR G PE ++ E+ K + DAVY H+EV+ +E+K E +E A+
Sbjct: 69 NLRKNLQQLGSNLVVRRGYPEKIIPEICKELAIDAVYFHQEVTSEEIKVETALEKALTQM 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+++ FWG+TLYH DDLPF L E+P + FR++V+ + + K LPS ++
Sbjct: 129 GVQLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINS--TFPTPKKLPSLPNL 186
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
+ G+IP+L +LGL S+ GGE+E ++RL ++ +Q K K
Sbjct: 187 DLGNIPTLAELGLETPEFDSR-------GVLEFIGGESEGIKRLNQYF--WQKNRLKDYK 237
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
+ ++ + G+++S K SPWLA+GCLSPR +++E+ K ND +
Sbjct: 238 ETRNEML-GSDYSSKFSPWLALGCLSPRYIYEEVTKYELERVK----ND--------STY 284
Query: 427 WLMFELLWRDFFRFITKKYSS 447
WL+FELLWRD+FRFI K+ +
Sbjct: 285 WLIFELLWRDYFRFICAKHGN 305
>gi|158335578|ref|YP_001516750.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
gi|158305819|gb|ABW27436.1| deoxyribodipyrimidine photolyase [Acaryochloris marina MBIC11017]
Length = 484
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 190/323 (58%), Gaps = 32/323 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR+HD+ L+ A + V+P YCFDPR +G++ GF KTGP+RA FL+ESV+
Sbjct: 4 LIWFRNDLRLHDHAPLHQAVRSNADVIPCYCFDPRQFGQTPFGFPKTGPFRAQFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L+ + SDL++R G PETVL ELA+A+ + VY +REV+ +E++ E ++ +A+ D
Sbjct: 64 DLRQSLRGKQSDLILRQGHPETVLPELAQALKVETVYFNREVTAEEIEVENRLRSALADL 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
GIE FW STL+H + LPF + E+P + FR++V K + + L LP D
Sbjct: 124 GIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPFPTPQSLSTLP---D 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM---KGGETEALQRLKKFAAEYQAQPP 362
+ PG++P L D GLS +P A +M GGET AL RL+ + E Q
Sbjct: 181 IAPGELPQLEDWGLSSP----------EPDARAMIQFSGGETAALARLQDYIWE---QDR 227
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+ + N S K SPWLA+GC+SPR + ++K +
Sbjct: 228 LKRYKETRNGMLQPNDSTKFSPWLALGCVSPRYIHQQVKTYE------------QDRVKN 275
Query: 423 AGSNWLMFELLWRDFFRFITKKY 445
+ WL+FEL+WRD+FRFI K+
Sbjct: 276 NSTYWLIFELIWRDYFRFICAKH 298
>gi|257058615|ref|YP_003136503.1| DASH family cryptochrome [Cyanothece sp. PCC 8802]
gi|256588781|gb|ACU99667.1| cryptochrome, DASH family [Cyanothece sp. PCC 8802]
Length = 488
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 195/321 (60%), Gaps = 24/321 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD++ + A + ++P YCFD R + +S GF KTG +R+ FL++S+
Sbjct: 9 LIWYRNDLRLHDHQPMFQAVKKKAQIIPFYCFDDRHFKTTSFGFPKTGNFRSQFLLQSID 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LRKNLQ GS+LV+R G PE ++ E+ + + DAVY H+EV+ +E+K E +E A+
Sbjct: 69 NLRKNLQQLGSNLVIRRGYPEKIIPEICQELAIDAVYFHQEVTSEEIKVETALEKALTQM 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+++ FWG+TLYH DDLPF L E+P + FR++V+ + + K LPS ++
Sbjct: 129 GVKLNPFWGTTLYHPDDLPFTLAEIPELFTNFRKQVEKKSLINS--TFPTPKKLPSLPNL 186
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
+ G+IP+L +LGL S+ GGE+E ++RL ++ +Q K K
Sbjct: 187 DLGNIPTLAELGLETPEFDSR-------GVLEFIGGESEGIKRLNQYF--WQKNRLKDYK 237
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
+ + + G+++S K SPWLA+GCLSPR +++E+ K ND +
Sbjct: 238 E-TRNGMLGSDYSSKFSPWLALGCLSPRYIYEEVTKYELERVK----ND--------STY 284
Query: 427 WLMFELLWRDFFRFITKKYSS 447
WL+FELLWRD+FRFI K+ +
Sbjct: 285 WLIFELLWRDYFRFICAKHGN 305
>gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens]
gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens]
Length = 557
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/336 (43%), Positives = 203/336 (60%), Gaps = 37/336 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIES 184
+IVWFRNDLR+ DNE+L A S +V+P+Y DPR YG++ GF KTG RA F++ES
Sbjct: 66 AIVWFRNDLRISDNEALLKAWQSSQAVVPLYVVDPRLYGQTYHFGFPKTGELRAQFIMES 125
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
V++LR NL+ RG DL+VR GKPE V+ +AK+IGA VYAH+E +E E ++ +
Sbjct: 126 VANLRDNLRQRGLDLIVRQGKPEDVVPSIAKSIGAHTVYAHKETCSEETTVETGVKRGLA 185
Query: 245 D-EG-----IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALDQL 297
+ EG I + + WG TLYHLDDLPF E+P Y FR+ V+ ++R ++ Q+
Sbjct: 186 NLEGGPKMQIRLDFVWGGTLYHLDDLPFSPSELPDVYTQFRKGVEYNCKVRPALKMPTQM 245
Query: 298 KGLP---SRGDVEPGDIPSLLDLGLS-QSAAMSQVWHGGKPAANSMKGGETEALQRLKK- 352
LP S E GDIP++ +LGL + + V H +GGET AL RL+
Sbjct: 246 GPLPESLSEKIGELGDIPTMAELGLKYREQSPLGVMH--------FEGGETAALARLQDY 297
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
F + Q + K ++G + GAN+S K SPWLA GCLSPR++ DE+K+ T A
Sbjct: 298 FWNKDQLKIYKETRNG----MLGANYSTKFSPWLAHGCLSPRTIHDEVKRYETERVA--- 350
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
ND + W++FEL+WRD+FRF++ KY +A
Sbjct: 351 -ND--------STYWVLFELIWRDYFRFVSIKYGNA 377
>gi|218437350|ref|YP_002375679.1| DASH family cryptochrome [Cyanothece sp. PCC 7424]
gi|218170078|gb|ACK68811.1| cryptochrome, DASH family [Cyanothece sp. PCC 7424]
Length = 488
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 198/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR+HD+E+LN A E ++P YCFD R + +S GF KTG +RA FL+ESV+
Sbjct: 7 LIWFRNDLRLHDHEALNEALQEKADIIPFYCFDERQFRTTSYGFPKTGKFRAQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++LQ GS+LV+R G PE ++ ++A+ + A+Y H EV+ +E+ E++++ A+
Sbjct: 67 DLRQSLQKLGSNLVIRQGLPELIIPQIAQPLNITALYYHEEVTAEELTVEKRLKKALAKC 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSRGD 305
I+V+ FWG+TLYH D+LPF++ ++P + FR K VE + T+ L K LP D
Sbjct: 127 NIKVESFWGTTLYHPDNLPFEIYQLPELFTNFR---KQVERKSTVAPVLPAPKSLPPLPD 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G++PSL +LGL + + +GGE +RL+ + +Q K
Sbjct: 184 LDIGNLPSLSELGLEPAVFEPR-------GVLKFQGGEIAGRERLQDYI--WQKNCLKNY 234
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + GA++S K SPWLA GCLSPR +++E++K ND +
Sbjct: 235 KETRNEML-GADYSSKFSPWLAHGCLSPRYIYEEVQKYEHQRVK----ND--------ST 281
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI K+ +
Sbjct: 282 YWLIFELLWRDFFRFICAKHGN 303
>gi|359457825|ref|ZP_09246388.1| deoxyribodipyrimidine photolyase [Acaryochloris sp. CCMEE 5410]
Length = 484
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/320 (39%), Positives = 185/320 (57%), Gaps = 26/320 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR+HD+ L+ A + V+P YCFDPR +G + GF KTGP+RA FL+ESV+
Sbjct: 4 LIWFRNDLRLHDHAPLHQAVRSNADVIPCYCFDPRQFGLTPFGFPKTGPFRAQFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L+ + SDL++R G PETV+ ELA+A+ + VY +REV+ +E+ E ++ A+ D
Sbjct: 64 DLRQSLRGKQSDLILRQGYPETVVPELAQALNVEVVYFNREVTAEEINVETRLRTALADL 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
GIE FW STL+H + LPF + E+P + FR++V K + + A L LP D
Sbjct: 124 GIECLRFWSSTLFHPEQLPFPIRELPEVFTQFRKQVEKSAKPKAPFPAPQSLSALP---D 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++PG++P L D GLS + A GGET AL RL+ + E Q
Sbjct: 181 IDPGELPQLEDWGLSSPKLDPR-------AMMQFSGGETAALARLQDYIWE---QDCLKQ 230
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
+ + N S K SPW A+GC+SPR + ++K + +
Sbjct: 231 YKETRNGMLQPNNSTKFSPWFALGCVSPRYIHQQVKAYE------------QERVKNNST 278
Query: 426 NWLMFELLWRDFFRFITKKY 445
WL+FEL+WRD+FRFI K+
Sbjct: 279 YWLIFELIWRDYFRFICAKH 298
>gi|166366036|ref|YP_001658309.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
gi|166088409|dbj|BAG03117.1| deoxyribodipyrimidine photolyase [Microcystis aeruginosa NIES-843]
Length = 485
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 197/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSGV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + +IR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRATYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+E G++PSL DLGL++S + S +GGE R+K++ + + K
Sbjct: 181 IELGNLPSLNDLGLTESIL-------DRGGVLSFQGGEMAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRF+ +K+ +
Sbjct: 279 YWLIFELLWRDFFRFMCRKHGN 300
>gi|425438643|ref|ZP_18818987.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
gi|389719600|emb|CCH96584.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9717]
Length = 485
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 196/322 (60%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSGV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + +IR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERYWQIRATYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+E G++PSL DLGL++S + S +GGE R+K++ + + K
Sbjct: 181 IELGNLPSLNDLGLTESIL-------DRGGVLSFQGGEMAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI K+ +
Sbjct: 279 YWLIFELLWRDFFRFICSKHGN 300
>gi|425466604|ref|ZP_18845902.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
gi|389830841|emb|CCI26891.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9809]
Length = 485
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 197/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLGGNLIIRRGKPEDIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSGV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + +IR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIRATYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+E G++PSL DLGL++S + S +GGE R+K++ + + K
Sbjct: 181 IELGNLPSLNDLGLTESIL-------DRGGVLSFQGGEMAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GNNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRF+ +K+ +
Sbjct: 279 YWLIFELLWRDFFRFMCRKHGN 300
>gi|411119570|ref|ZP_11391950.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
gi|410711433|gb|EKQ68940.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoriales cyanobacterium JSC-12]
Length = 496
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 194/321 (60%), Gaps = 27/321 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++W+RNDLRV D+E L A + S +LPVYC DPR +G++S GF KTG +RA FL+ES+
Sbjct: 7 LIWYRNDLRVADHEPLYQALRINASHILPVYCIDPRQFGQTSFGFPKTGAFRAQFLLESL 66
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR++LQ GS+L++R G PE V+ EL + AV H+EV+ +EV E+ +E A+K
Sbjct: 67 ADLRRSLQQLGSNLIIRRGYPEQVIPELIQQFSISAVCYHKEVTSEEVIVEDALERALKP 126
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
G+E++ FWG TLYH +LPF + E+P + FR++V K V + T+ A +L LP+
Sbjct: 127 MGVELRSFWGHTLYHPAELPFDISEIPELFTSFRKQVEKSVTVNSTLPAPKRLPALPA-- 184
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
+EPG++P L + L S+ A GGET RL + +Q K
Sbjct: 185 -IEPGEMPQLAEFNLKAPNFDSR-------AVLKFVGGETAGHNRLDYYF--WQQDCLKV 234
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
K+ + + GA++S K SPWLA+GCLSPR++++++++ E
Sbjct: 235 YKE-TRNGMLGADYSSKFSPWLALGCLSPRTIYEQVQQYE------------EQRVKNDS 281
Query: 425 SNWLMFELLWRDFFRFITKKY 445
+ WL+FELLWRD+FRFI K+
Sbjct: 282 TYWLIFELLWRDYFRFICAKH 302
>gi|443320872|ref|ZP_21049947.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
gi|442789415|gb|ELR99073.1| cryptochrome, DASH family [Gloeocapsa sp. PCC 73106]
Length = 485
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 187/322 (58%), Gaps = 31/322 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+ D+E + A ++ V+PVYCFDPR +G + G KTG +RA FL ESV
Sbjct: 5 LIWYRNDLRLEDHEPMYQALSQKAQVIPVYCFDPRQFGTTGCGLVKTGSFRAQFLRESVI 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR NLQ GS+L++R G PE ++ LA++I DAVY H+EV+ +E+ E ++ A+
Sbjct: 65 DLRHNLQQLGSNLILRQGLPEVIIPALARSIAVDAVYFHQEVTAEELAVETALKKALAQS 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSRGD 305
I V+ FWG+TLYHLD+LPF ++P + FR K VE + IE +L Q + LP D
Sbjct: 125 QITVQSFWGATLYHLDNLPFAPAQLPELFTNFR---KEVERKAEIEPSLPQPERLPPLPD 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++PG+IP L ++ + + KGGE RLK + E A N
Sbjct: 182 IDPGEIPELAEIAPDSRGVL------------NFKGGERAGKARLKSYFWEKDA---LRN 226
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
+ + G ++S K SPWLA GCLSPR ++ +++ T ND +
Sbjct: 227 YKETRNGMLGPDYSSKFSPWLANGCLSPRYIYAQVQSYETQRVK----ND--------ST 274
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI+ K+ +
Sbjct: 275 YWLVFELLWRDFFRFISSKHKN 296
>gi|425471952|ref|ZP_18850803.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
gi|389882102|emb|CCI37425.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9701]
Length = 485
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 198/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E+++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIHRAIQEQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L+ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLENLGGNLIIRRGKPEELIPQLVQELQIAKVYYHQEVTAEELAVEKAVNQALSGF 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + EIR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G++PSL DLGL++ + W G S +GGE R+K++ + + K
Sbjct: 181 IDFGNLPSLNDLGLTE---LILDWRG----VLSFQGGEMAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI K+ +
Sbjct: 279 YWLIFELLWRDFFRFICSKHGN 300
>gi|392963931|ref|ZP_10329352.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
gi|387846826|emb|CCH51396.1| cryptochrome, DASH family [Fibrisoma limi BUZ 3]
Length = 482
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 199/324 (61%), Gaps = 28/324 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESV 185
+ WFRNDLR+HDNE A ++ VLPV+ F+PR + + + GF KTG YRASFL+ESV
Sbjct: 6 LYWFRNDLRLHDNEGFARAVADADEVLPVFVFNPRLFAEVHNLGFKKTGIYRASFLLESV 65
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR++++A+G +L++R+G+P +L ELA++ AVYA +EV+ +E +E + +K
Sbjct: 66 ADLRQSIRAKGGELIIRIGEPANILAELAESADVAAVYASKEVTQEETDAESNLSKRLKP 125
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
I++ FW +TLYH+ DLPF++ ++P + FR ++ K ++R TI A +Q++ +
Sbjct: 126 LNIDLDLFWVATLYHVRDLPFEISKLPDIFTQFRTRIEKYGKVRPTIPAPEQIRIM---S 182
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ-AQPPK 363
+VE GDIP+L G + A AA KGGET AL+RL ++ E + + K
Sbjct: 183 EVEAGDIPTLATFGFAPDVAPDI------RAAVPFKGGETVALERLNRYVWERELIRTYK 236
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
++G + G ++S K S WLA+GCLSPR +++E+K+ +
Sbjct: 237 ETRNG----MLGEDYSSKFSAWLALGCLSPRLIYEEVKRYE------------DERVKNE 280
Query: 424 GSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRDFFRF+ +Y +
Sbjct: 281 STYWLIFELLWRDFFRFVALRYGT 304
>gi|307153163|ref|YP_003888547.1| DASH family cryptochrome [Cyanothece sp. PCC 7822]
gi|306983391|gb|ADN15272.1| cryptochrome, DASH family [Cyanothece sp. PCC 7822]
Length = 495
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 194/322 (60%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E LN A E ++P YCFD R + K+S GF KTG +RA FL+ES++
Sbjct: 7 LIWYRNDLRLHDHEPLNKALKEKAEIIPFYCFDERQFRKTSYGFPKTGNFRAQFLLESLA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL+K+LQ RGSDL++R G PE ++ +LA+ + AVY H+EV+ +E+ E+ +E+ +
Sbjct: 67 DLKKSLQERGSDLIIRKGLPEKIIPQLAQELKLTAVYYHQEVTAEELAVEKALESGLNKI 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
++ + FWG+TLYH D+LPFK+ +P + FR+KV K + + L LP+
Sbjct: 127 RVKTESFWGATLYHPDNLPFKIAHIPELFTNFRKKVEKASTVDPILPTPKSLSPLPA--- 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+E G +P L LGL ++ Q +GGET AL+RL+++ +Q K
Sbjct: 184 IEIGTLPDLAALGL-ETPIFDQ------RGVLKFRGGETAALERLEEYF--WQKNCLKSY 234
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ + + G ++S K SPWLA GC+SPR +++ ++K + +
Sbjct: 235 KE-TRNGMLGGDYSSKFSPWLASGCISPRYIYEAVQKYE------------QQRVKNDST 281
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRD+FRFI K+ +
Sbjct: 282 YWLIFELLWRDYFRFICAKHGN 303
>gi|254424429|ref|ZP_05038147.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
gi|196191918|gb|EDX86882.1| cryptochrome, DASH family [Synechococcus sp. PCC 7335]
Length = 490
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 125/321 (38%), Positives = 195/321 (60%), Gaps = 27/321 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W RNDLR+HD+E L+ A + ++PVYCFDPR + +S GF KTG YRA FLIE+V+
Sbjct: 4 LLWLRNDLRLHDHEPLHRATEQGADIIPVYCFDPRQFQATSFGFPKTGSYRAQFLIETVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ L++RGS+LV+ GKPE + L KA AVY H EV+ +E++ E+++E +
Sbjct: 64 ALKAELRSRGSNLVILQGKPEEEIPALVKAFDIAAVYWHEEVTPEEIEVEQRLETVLNQL 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+ + +WG+TLYH DDLPF++ ++P + FR+ + K ++ T ++L LP+ +
Sbjct: 124 KVTSEVYWGATLYHPDDLPFEVSQLPEVFTQFRKAIEKNTQVFPTFPTPEKLPSLPN--E 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPKG 364
+EPG++PSL DLGL ++ + G P KGGE++ L RL+ F + Q K
Sbjct: 182 IEPGELPSLSDLGLERTPIDEK---GVLP----FKGGESKGLDRLQHYFWNADRLQRYKE 234
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + GA++S K SPWLA G LSPR +++E+++
Sbjct: 235 TRNG----MLGADYSSKFSPWLANGSLSPRRVYEEVQRYE------------RERKKNNS 278
Query: 425 SNWLMFELLWRDFFRFITKKY 445
+ W++FEL+WRD+FRF+ KY
Sbjct: 279 TYWMIFELMWRDYFRFVCVKY 299
>gi|428779828|ref|YP_007171614.1| DASH family cryptochrome [Dactylococcopsis salina PCC 8305]
gi|428694107|gb|AFZ50257.1| cryptochrome, DASH family [Dactylococcopsis salina PCC 8305]
Length = 485
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/328 (37%), Positives = 199/328 (60%), Gaps = 27/328 (8%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ ++W+RNDLRVHD+E L A ++P YCFD R++GK++ GF KTG +RA FL
Sbjct: 3 QQVILIWYRNDLRVHDHEPLFRALQTQGQIIPFYCFDNREFGKTAFGFPKTGGFRAQFLR 62
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
ESV++LR+NLQ +GS+L++R G+PET++ +L K + V+ H EV+ +E E+++E
Sbjct: 63 ESVANLRENLQDKGSNLIIRCGQPETIISDLVKDLQITDVFFHSEVTAEETHVEKELEKK 122
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLP 301
+ + G+++ FWG+TL HLDDLP + E+P + +R++V K +IR + + D+L L
Sbjct: 123 LTNYGVKLTSFWGATLDHLDDLPMTIDELPDVFTQYRKRVEKSSQIRASFPSPDRLPSLS 182
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-Q 360
S ++ GD+P+L +LG+ + + GGE+ ++RL ++ E +
Sbjct: 183 S--EINCGDLPTLEELGVKTPLK-------DERGVLNFIGGESAGIKRLSEYIWEEDCLK 233
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + GAN+S K SPWLA GCLSPR ++D+++ E
Sbjct: 234 VYKETRNG----MLGANYSSKFSPWLARGCLSPRYIYDQVQTYE------------EERV 277
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ WL+FEL+WRD+FRF+ KY ++
Sbjct: 278 KNNSTYWLIFELMWRDYFRFVCLKYGNS 305
>gi|425444341|ref|ZP_18824394.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
gi|389730294|emb|CCI05405.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9443]
Length = 485
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/322 (37%), Positives = 197/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++L++ GS+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 NLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIAKVYYHQEVTAEELAVEKAVNKALSRV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
++K FW +TLYH DDLPF L ++P + FR++V + EIR T + +L LP
Sbjct: 124 PAQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G++PSL DLGL++ + S +GGE R+K++ + + K
Sbjct: 181 IDWGNLPSLNDLGLTEPIL-------DRRGFLSFQGGEMAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI K+ +
Sbjct: 279 YWLIFELLWRDFFRFICSKHGN 300
>gi|284041014|ref|YP_003390944.1| DASH family cryptochrome [Spirosoma linguale DSM 74]
gi|283820307|gb|ADB42145.1| cryptochrome, DASH family [Spirosoma linguale DSM 74]
Length = 487
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 191/323 (59%), Gaps = 21/323 (6%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESV 185
+ WFRNDLR+HDNE A + VLPV+ FDPR + + S F + +RA+FL+ESV
Sbjct: 5 LYWFRNDLRLHDNEGFVRALENADQVLPVFVFDPRWFARHSQLEFRRMSAFRANFLLESV 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR++L++RG+DL+VRVGKP VL ELA IGA AVYA +EV+H+E E K+ +K
Sbjct: 65 ADLRQSLRSRGADLIVRVGKPADVLAELAGEIGATAVYASKEVTHEETTQETKLSTKLKP 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
I+++ FW STLYH+ DLPF + ++P + FR+++ K IR +++ +P
Sbjct: 125 LNIDIELFWMSTLYHVRDLPFTISQLPDVFSKFRQQLEKKAIIRPAFTLPTRIELVP--- 181
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
+++PG IP+L LG + + + + A GGET AL RL ++ +Q
Sbjct: 182 NIDPGAIPTLSTLGFNDT-DIRLILQPDARGAVPFSGGETVALARLDRYL--WQTDLIAT 238
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
K+ + + G ++S K S WLA GCLSPR +++E+ + T
Sbjct: 239 YKE-TRNGLLGEDYSSKFSAWLATGCLSPRKIYEEVTRYET------------ERVRNES 285
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRDFFRF+ K+ +
Sbjct: 286 TYWLIFELLWRDFFRFVALKFGT 308
>gi|425453111|ref|ZP_18832925.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|425461683|ref|ZP_18841157.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
gi|389764695|emb|CCI09167.1| Cryptochrome DASH [Microcystis aeruginosa PCC 7941]
gi|389825403|emb|CCI24828.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9808]
Length = 485
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 199/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++L+ GS+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 NLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSII 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + EIR T + +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G++P L DLGL++ + Q GG S +GGE R+K++ + + K
Sbjct: 181 IDWGNLPILKDLGLTE-LILDQ---GG---VLSFQGGEIAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI K+ +
Sbjct: 279 YWLIFELLWRDFFRFICSKHGN 300
>gi|422304305|ref|ZP_16391652.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
gi|389790612|emb|CCI13529.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9806]
Length = 485
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 199/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E++ A E + ++P YCFD R +G +S GF K+G +RA FL+ESV+
Sbjct: 4 LIWYRNDLRLHDHEAIYRAIQEQLEIIPFYCFDERQFGLTSYGFPKSGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ GS+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSGF 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + EIR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G++PS DLGL++ + Q GG S +GGE R+K++ + + K
Sbjct: 181 IDWGNLPSFNDLGLTE-PILDQ---GG---VLSFQGGEMAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI K+ +
Sbjct: 279 YWLIFELLWRDFFRFICSKHGN 300
>gi|440756671|ref|ZP_20935871.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
gi|440172700|gb|ELP52184.1| cryptochrome DASH [Microcystis aeruginosa TAIHU98]
Length = 485
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 199/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++L+ GS+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 NLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSII 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + EIR T + +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G++P L DLGL++ + Q GG S +GGE R+K++ + + K
Sbjct: 181 IDWGNLPILKDLGLTE-LILDQ---GG---VLSFQGGEVAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI K+ +
Sbjct: 279 YWLIFELLWRDFFRFIGSKHGN 300
>gi|425437395|ref|ZP_18817812.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
gi|389677621|emb|CCH93442.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9432]
Length = 485
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 198/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++L+ GS+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 NLRQSLEGLGSNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSII 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + EIR T + +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWEIRTTYPSPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G++P L DLGL++ + Q GG S +GGE R+K++ + + K
Sbjct: 181 IDWGNLPILKDLGLTE-LILDQ---GG---VLSFQGGEIAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSFGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL FELLWRDFFRFI K+ +
Sbjct: 279 YWLTFELLWRDFFRFICSKHGN 300
>gi|425455819|ref|ZP_18835530.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
gi|389803212|emb|CCI17833.1| Cryptochrome DASH [Microcystis aeruginosa PCC 9807]
Length = 485
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 196/322 (60%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGLTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ S+L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLDSNLIIRWGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSRV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF L ++P + FR++V + +I+ T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTLNQLPELFTNFRKQVERHWQIKATYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+E G++PS DLG++++ + S +GGE R+K++ + + K
Sbjct: 181 IELGNLPSFNDLGVTEAIL-------DRRGFLSFQGGEMAGKSRIKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSCGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI K+ +
Sbjct: 279 YWLIFELLWRDFFRFICSKHGN 300
>gi|390440296|ref|ZP_10228639.1| Cryptochrome DASH [Microcystis sp. T1-4]
gi|389836306|emb|CCI32765.1| Cryptochrome DASH [Microcystis sp. T1-4]
Length = 485
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 197/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYQAVQEQFEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L++ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 DLRQSLESLGGNLIIRRGKPEELIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSGF 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF + ++P + FR++V + EIR T +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTIHQLPELFTNFRKQVERHWEIRTTYPTPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G++P L DLGL++ + Q GG S +GGE R+K++ + + K
Sbjct: 181 IDWGNLPILNDLGLTE-PILDQ---GG---VLSFQGGEMAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL+ GCLSPR +++E+KK ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSCGCLSPRYIYEEVKKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI K+ +
Sbjct: 279 YWLIFELLWRDFFRFICSKHGN 300
>gi|443661557|ref|ZP_21132734.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
gi|159029066|emb|CAO90052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332297|gb|ELS46914.1| cryptochrome DASH [Microcystis aeruginosa DIANCHI905]
Length = 485
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/322 (36%), Positives = 197/322 (61%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E++ A E + ++P YCFD R +G +S GF KTG +RA FL+ESV+
Sbjct: 4 LIWYRNDLRVHDHEAIYRAIQEQLEIIPFYCFDERQFGFTSYGFPKTGKFRAKFLLESVA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+++L+ G +L++R GKPE ++ +L + + VY H+EV+ +E+ E+ + A+
Sbjct: 64 NLQQSLEGLGGNLIIRRGKPEEIIPQLVQELQIARVYYHQEVTAEELAVEKAVNKALSGV 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+++K FW +TLYH DDLPF + ++P + FR+++ + EIR T + +L LP
Sbjct: 124 PVQIKTFWTATLYHPDDLPFTVNQLPELFTNFRKQIERHWEIRTTYASPKKLTKLPK--- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G++PSL DLGL++ + S +GGE R+K++ + + K
Sbjct: 181 IDWGNLPSLNDLGLTELIL-------DRGGVLSFQGGEMAGKSRVKEYI--WDSDSLKTY 231
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ ++ + G N+S K S WL++GCLSPR +++E++K ++ +
Sbjct: 232 KETRNEML-GTNYSSKFSAWLSLGCLSPRYIYEEVQKYE------------QTRVKNDST 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDFFRFI K+ +
Sbjct: 279 YWLIFELLWRDFFRFICSKHGN 300
>gi|428213303|ref|YP_007086447.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
gi|428001684|gb|AFY82527.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Oscillatoria acuminata PCC 6304]
Length = 486
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 193/323 (59%), Gaps = 26/323 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+W+RNDLRVHD+E L A ++P+YCFDPR + K++ GF KTGP+RA FL+ESV+
Sbjct: 7 ILWYRNDLRVHDHEPLYRALETHAPIVPIYCFDPRQFSKTAYGFPKTGPFRAQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++LQ GS+L++++GKPE +L ++A + A A+Y H+EV+ +E+ E + +K
Sbjct: 67 NLRQSLQNLGSNLIIKIGKPEVILPQIAHQVNASAIYFHQEVTAEEIAVETALSQGVKSL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ +K FWG TLYH D LPF + +P + FR++V+ + LP ++
Sbjct: 127 NVALKSFWGHTLYHCDRLPFDIPNIPELFTHFRKQVEKTATPDS--CFPTPTQLPPLPEI 184
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPKGN 365
E G++P+L +LG+ + A S+ A GGE+ + R++ F + + K
Sbjct: 185 ETGNLPNLTELGVEKVAIASK-------AVLPFTGGESAGIARMEDYFWTGDRLRTYKET 237
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
++G + G ++S K SPWL++GCLSPR ++ +++ T ND +
Sbjct: 238 RNG----MLGPDYSSKFSPWLSLGCLSPRYIYQQVQDYETQRIK----ND--------ST 281
Query: 426 NWLMFELLWRDFFRFITKKYSSA 448
WL+FELLWRD+FRFI K+ +A
Sbjct: 282 YWLIFELLWRDYFRFICAKHGNA 304
>gi|428222871|ref|YP_007107041.1| DASH family cryptochrome [Synechococcus sp. PCC 7502]
gi|427996211|gb|AFY74906.1| cryptochrome, DASH family [Synechococcus sp. PCC 7502]
Length = 501
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 189/322 (58%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFRNDLR HD+E+L A ++P+YC DPR + ++S GF KTG +RA FL+ES++
Sbjct: 6 IVWFRNDLRSHDHEALYRAIQTKAQIIPIYCIDPRHFAQTSFGFPKTGSFRAKFLLESLT 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR + GS+L++R G PE V+ ELA I A VY H EV+ +E+K E K+ +K
Sbjct: 66 DLRNKFISLGSNLIIRQGLPELVIPELAAQIQATDVYFHAEVTSEEIKVEAKLIDNLKKI 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL-KGLPSRGD 305
I+ + FWG+TLYH D LPF + +P + FR K VE T+ + LPS D
Sbjct: 126 SIKSESFWGNTLYHPDALPFAIDRLPELFTSFR---KEVEKFCTVNPCVPIPTYLPSLQD 182
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+E G++P+L +LGL + A + A GGET+AL+RL + +Q+
Sbjct: 183 LEIGEMPTLEELGLEPAIADPR-------AVIKFIGGETQALERLDYYF--WQSDLIATY 233
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ +++ G N+S K SPWLA+GC+SPR ++ +++K + +
Sbjct: 234 KE-TRNAMLGGNYSSKFSPWLALGCISPRYIYAQIQKYE------------QERIKNDST 280
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRD+FRFI K+ +
Sbjct: 281 YWLVFELLWRDYFRFIATKHGN 302
>gi|428217984|ref|YP_007102449.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
gi|427989766|gb|AFY70021.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudanabaena sp. PCC 7367]
Length = 500
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 188/332 (56%), Gaps = 38/332 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+W+RNDLR+HD+E L T +P+YCFDPR + + GF KTG +RA FL ESV
Sbjct: 7 IIWYRNDLRIHDHEPLWTVAKAGAIAIPIYCFDPRQFATTKYGFAKTGAFRAQFLTESVL 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHREVSHDEVKSEEKIEAAMK 244
DLR L+ GSDL+VR G+PE +L ELA+ + A+A+Y H+EV+ +E K E I +
Sbjct: 67 DLRDRLRQLGSDLIVRYGEPEQILPELAQKLNANANAIYYHQEVTSEETKVEAAIAQDLA 126
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSR 303
I+++ FWG TLYH DDLPF + +P + FR K VE TI AL L S
Sbjct: 127 ATDIKLQAFWGHTLYHRDDLPFSMERIPAIFTKFR---KQVEQEATINPALPMPTELISF 183
Query: 304 GD----------VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF 353
D ++PG+IPSL LGL A + AA + GGE A+ RL ++
Sbjct: 184 NDLNDLNEIDAPLDPGEIPSLAQLGLEPIAPDDR-------AAITFTGGEGAAIARLDQY 236
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
+Q + K + + GA++S K SPWLA GC+SPR +F++++K A
Sbjct: 237 F--WQNDCLRTYKQ-TRNGMLGADYSSKFSPWLAHGCISPRYIFEQVQKYEQDRVA---- 289
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
ND + WL+FEL+WRD+FRFI K+
Sbjct: 290 ND--------STYWLVFELIWRDYFRFIAAKH 313
>gi|404450368|ref|ZP_11015352.1| DASH family cryptochrome [Indibacter alkaliphilus LW1]
gi|403764104|gb|EJZ25020.1| DASH family cryptochrome [Indibacter alkaliphilus LW1]
Length = 473
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 187/322 (58%), Gaps = 25/322 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLRVHD+ L A+ ++V V+PVYCFDPR + GF KTG +RA FL+ +V
Sbjct: 5 LVWFRNDLRVHDHAPLFAASQKAVEVIPVYCFDPRQFDTIELGFAKTGSFRADFLLSAVD 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LRK L GSDL + GKPE + LA + DAV+ EV+ +E EE +E + E
Sbjct: 65 NLRKRLNEIGSDLFILQGKPEEEVSRLALELNVDAVFFSEEVTSEEKYVEEALEKKLWKE 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
GI+ + FW STL+HL+DLPF + ++P + FR++ K I+KT LK LP D
Sbjct: 125 GIKTESFWQSTLFHLEDLPFPINQVPEVFTQFRKECEKYAHIKKTFPIPINLK-LPEL-D 182
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
V G+IPSL GL + A + + +GGE E L+RL+ + + +
Sbjct: 183 VLRGEIPSLKSFGLEKPDADPR-------SVLVFEGGEEEGLRRLQTY---FWKNDCLKD 232
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
+ + GA++S K SPWLA+GCLSPR +++E++K ++ +
Sbjct: 233 YKQTRNGLLGADYSSKFSPWLALGCLSPRYIYEEIQKYEKAV------------KKNQST 280
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FEL+WRD+FRFI KK+ +
Sbjct: 281 YWLIFELIWRDYFRFIAKKHGN 302
>gi|254412957|ref|ZP_05026729.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
gi|196180121|gb|EDX75113.1| cryptochrome, DASH family [Coleofasciculus chthonoplastes PCC 7420]
Length = 488
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 192/323 (59%), Gaps = 28/323 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD+E L+ A V+P YCFD R + +S GF KTG +RA FL+ESV+
Sbjct: 7 LLWYRNDLRLHDHEPLHQALQTKAQVIPCYCFDDRLFHTTSFGFPKTGAFRAKFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR+N+++RGS+L+VR G PE V+ LAK + VY H+EV+ +EV E ++ A+ +
Sbjct: 67 DLRENVRSRGSNLLVRRGLPENVIPTLAKELDITTVYFHQEVTSEEVAVESALKNALSEI 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSRGD 305
GI V+ FWGSTLYH DDLPF L ++P + FR K VE + TI K LPS
Sbjct: 127 GITVQTFWGSTLYHPDDLPFNLLKIPELFTNFR---KQVEKKSTIYPPFPTPKRLPSLPS 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKG 364
VE G++P L D GL + A +GGET L RL + + + K
Sbjct: 184 VEVGELPQLADFGLESPIFDER-------AVLPFQGGETAGLARLNDYFWKKDCLKVYKQ 236
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + G+++S K SPWLA+GCLSPR +++++++ ND
Sbjct: 237 TRNG----MLGSDYSSKFSPWLALGCLSPRFIYEQVQQYEQEQIK----ND--------S 280
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL+WRDFFRFI K+ +
Sbjct: 281 TYWLVFELIWRDFFRFICAKHGN 303
>gi|327274302|ref|XP_003221917.1| PREDICTED: cryptochrome DASH-like [Anolis carolinensis]
Length = 525
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 197/332 (59%), Gaps = 30/332 (9%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYR 177
+++ R ++ RNDLR HDNE L+ A + + ++P+YCFDPR Y ++ F KTGP+R
Sbjct: 2 ASSLPRTALCLLRNDLRCHDNEVLHWAQSHADRIVPLYCFDPRHYAQTYHYNFPKTGPFR 61
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA-VYAHREVSHDEVKSE 236
FL+ESV DLR+ L+ +GS+LVVR GKPE V+ +L +G+ A V H E + +E+ E
Sbjct: 62 LRFLLESVKDLRETLKKKGSNLVVRKGKPEDVVRDLIIQLGSVASVSFHEEATKEELDVE 121
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKG-VEIRKTIEAL 294
+ + + G+EV+ FWGSTLYH DLPFK + ++P Y FR+ V+ +R ++
Sbjct: 122 KALIRVCTEHGVEVQTFWGSTLYHRQDLPFKHISQLPDVYTQFRKAVESQARVRPVLKME 181
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
Q+K LP ++E G+IPSL D G+++ + +A GGET+AL RL+ +
Sbjct: 182 GQMKSLPP--EIEEGNIPSLEDFGMTEPLRDPR-------SAFLCSGGETQALMRLQHYF 232
Query: 355 AEYQ-AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
E K ++G + G ++S K +PWLA+GC+SPR ++D+++K +A
Sbjct: 233 WETNLVASYKETRNG----LIGLDYSTKFAPWLALGCISPRYIYDQIQKYEKERTA---- 284
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W++FEL WRD+FRF+ KY
Sbjct: 285 --------NQSTYWVLFELAWRDYFRFVALKY 308
>gi|428769113|ref|YP_007160903.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
gi|428683392|gb|AFZ52859.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
Length = 491
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/328 (39%), Positives = 194/328 (59%), Gaps = 27/328 (8%)
Query: 122 IRRASIVWFRNDLRVHDNESL-NTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
I +++WFRNDLR+HD+ L A + ++P YCFD R + +S GF KTG YRA F
Sbjct: 6 IMNTALIWFRNDLRIHDHAILARIAEGDYQRIIPFYCFDDRQFQTTSFGFAKTGKYRAKF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
LIESV+DLR++LQ G+DL+VR G PE ++ ++AK Y +E + +E+K E+++
Sbjct: 66 LIESVADLRESLQKLGTDLIVRKGIPEQIIPDIAKQYNVTEFYFSQEATEEEIKVEKRLI 125
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A+K I+VK W STLY DDLPF + +P + FR++++ I + E + K L
Sbjct: 126 KALKQLHIQVKSCWQSTLYQPDDLPFSIENLPDLFTHFRKQIEKKSIVE--ECFETPKKL 183
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA- 359
P ++ G+IP L DLGL ++ +SQ+ A KGGETEA++RLK + E
Sbjct: 184 PPIPPIDTGNIPILSDLGL-ENFEVSQL------AVLPFKGGETEAIKRLKSYFWEKDCL 236
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
+ K ++G + G ++S K SPWLA+GCLSPR +++E++K +
Sbjct: 237 KVYKETRNG----MLGGDYSSKFSPWLALGCLSPRYIYEEVEKYE------------QER 280
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRDFFRF KY +
Sbjct: 281 VKNDSTYWLIFELLWRDFFRFTAVKYGN 308
>gi|443318941|ref|ZP_21048182.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
gi|442781475|gb|ELR91574.1| cryptochrome, DASH family [Leptolyngbya sp. PCC 6406]
Length = 494
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 185/322 (57%), Gaps = 23/322 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W RNDLR+HD+ L A V+PVYC DPR +G++ GF KTG +RA FL+E+++
Sbjct: 4 LLWLRNDLRLHDHAPLQAALKTGAQVIPVYCLDPRQFGQTDFGFPKTGAFRAQFLLEALA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L+ G DLVVR G PE VL LA+ + D VY HREV+ +E E + + +
Sbjct: 64 DLRQSLRRLGGDLVVRQGFPEQVLPALAREVKCDRVYWHREVTPEETTVESALTRTLATQ 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+ V++FWG+TLYH DDLPF L ++P + FR++V+ + R + + + LP +
Sbjct: 124 GVAVQHFWGATLYHPDDLPFPLEQLPDIFTQFRKRVER-DSRVSTPSPPPTQLLPLPQGL 182
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
EPG + SL +LGL + A GGET L RL + + A K K
Sbjct: 183 EPGSLSSLQNLGLQPPIRDDR-------ATLVFTGGETAGLARLHHYF--WAADCLKTYK 233
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
+ + + GA++S K SPWLA+GCLSPR + ++ T ND +
Sbjct: 234 E-TRNGLLGADYSSKFSPWLALGCLSPRYIHSAVQDYETQRVK----ND--------STY 280
Query: 427 WLMFELLWRDFFRFITKKYSSA 448
WL+FELLWRD+FRF+ +Y +
Sbjct: 281 WLVFELLWRDYFRFVCTRYRDS 302
>gi|37520404|ref|NP_923781.1| cryptochrome [Gloeobacter violaceus PCC 7421]
gi|81834455|sp|Q7NMD1.1|CRYD_GLOVI RecName: Full=Cryptochrome DASH
gi|35211397|dbj|BAC88776.1| phrA [Gloeobacter violaceus PCC 7421]
Length = 500
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 191/323 (59%), Gaps = 26/323 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VW+RNDLRVHD+E L +A +++ V+ +YCFDPR +GK+ GF+KTGP+RA FL+E
Sbjct: 4 KTVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLE 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV+DLR++L+ GSDL+VR G PE V+ L + AV+ H EV+ +E+ E ++AA+
Sbjct: 64 SVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ V+ FWG+TL H DDLPF + +P + FR++V + I + A +L
Sbjct: 124 APLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPPLPAPAKLP---P 180
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
V+PG+IP L DLGL + A KGGET L RL+++ +Q
Sbjct: 181 LPAVDPGEIPQLADLGLESPVTDER-------AVLQFKGGETSGLARLEEYF--WQKSLL 231
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K K + + GA++S K S WLA+GCLS R + ++++ T ND
Sbjct: 232 KSYKQ-TRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIK----ND------- 279
Query: 423 AGSNWLMFELLWRDFFRFITKKY 445
+ WL+FELLWRD+FRFI K+
Sbjct: 280 -STYWLIFELLWRDYFRFIAAKH 301
>gi|124006560|ref|ZP_01691393.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
gi|123987973|gb|EAY27653.1| deoxyribodipyrimidine photolyase [Microscilla marina ATCC 23134]
Length = 483
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 191/323 (59%), Gaps = 25/323 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ IVWFRNDLRVHDN+ L A +++ +LPVYCFDPR Y +S GF KTG +RA FLIE
Sbjct: 13 QVKIVWFRNDLRVHDNDVLAKAASDADYLLPVYCFDPRQYETTSLGFAKTGAHRAQFLIE 72
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++++LR NL+A+GS LV+R+GKPE V+ +LAKA A AVYA +E+ +E + +++E +
Sbjct: 73 TLANLRANLEAKGSGLVIRIGKPEEVIADLAKATQAKAVYASQEIGTEEDATVKQLEKRL 132
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ ++ W L H DLPF L + + FR+++ +G+++R+ + D L
Sbjct: 133 WKNQVFLELLWTGNLIHPADLPFPLNSLSNVFTDFRKEIEQGLKVREAVTLPDTLP--LL 190
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
VE G +P L DLGL+ + ++ A KGGET LQR++ + +Q
Sbjct: 191 PPGVEAGSLPKLTDLGLTHTTPDTR-------AVLHFKGGETAGLQRIEDYI--WQRSLL 241
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+ KD + + GA++S K SPWLA G +S R+++ E+KK +
Sbjct: 242 QHYKD-TRNGLLGADYSTKFSPWLANGAISARTVYHEIKKYEQQV------------VKN 288
Query: 423 AGSNWLMFELLWRDFFRFITKKY 445
+ L+FELLWR++FR + +KY
Sbjct: 289 KSTYHLVFELLWREYFRLVARKY 311
>gi|410027954|ref|ZP_11277790.1| DASH family cryptochrome [Marinilabilia sp. AK2]
Length = 474
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 183/321 (57%), Gaps = 23/321 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLRVHD+ L A ++ V+PVYCFDPR++ K S G DKTG +RA FLIE+V
Sbjct: 6 VVWFRNDLRVHDHAPLFYAAEKAEEVIPVYCFDPRNFKKVSLGIDKTGNHRAKFLIEAVD 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR NLQ+ G DLV+ GKPE VLV LAK A+A++ EV+ +E + E ++E
Sbjct: 66 NLRSNLQSLGGDLVIIQGKPEEVLVSLAKKHDAEAIFFSEEVTDEEKEVELQLEQNAWKH 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI+ +W S+LYH+ DLPF + + P + FR++ + + L + P +
Sbjct: 126 GIKTTAYWQSSLYHIQDLPFPVNQTPEVFTQFRKECEKFAKVQGTLPLPKKINFP-KNSF 184
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
GD+P L GL + S+ A KGGETE ++RL+ + E Q
Sbjct: 185 NLGDLPRLSTFGLKEPDLSSR-------AVLVFKGGETEGIRRLQTYFWE---QDLLKEY 234
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
+ + GA++S K S W+++GCLSPR +++E+K+ + +
Sbjct: 235 KETRNGLLGADYSSKFSAWISLGCLSPRYIYEEVKRYE------------KERKKNQSTY 282
Query: 427 WLMFELLWRDFFRFITKKYSS 447
WL+FEL+WRD+FRFI KK+ +
Sbjct: 283 WLIFELIWRDYFRFICKKHGN 303
>gi|97047702|sp|Q4KML2.2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
Short=zCRY-DASH
Length = 520
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 188/329 (57%), Gaps = 30/329 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE + A + ++P+YCFDPR Y G F KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEA 241
+SV DLR L+ GS L+VR GKPE V+ EL K +G+ + A H EV+ +E EEK++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ V+ FWGSTLYH DDLPF +G +P Y FR+ V+ +R + +Q+K
Sbjct: 125 ICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTPEQVKS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
PS +E G IP+ LG ++ + +A +GGETEAL RLK + + A
Sbjct: 185 PPS--GLEEGPIPTFDSLGQTEPLDDCR-------SAFPCRGGETEALARLKHYFWDTNA 235
Query: 360 QPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G +FS K SPWLA+GC+SPR +++++KK +A
Sbjct: 236 VATYKETRNG----MIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTA--------- 282
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W++FELLWRD+F+F+ KY +
Sbjct: 283 ---NQSTYWVIFELLWRDYFKFVALKYGN 308
>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
Length = 520
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 188/329 (57%), Gaps = 30/329 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE + A + ++P+YCFDPR Y G F KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEA 241
+SV DLR L+ GS L+VR GKPE V+ EL K +G+ + A H EV+ +E EEK++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ V+ FWGSTLYH DDLPF +G +P Y FR+ V+ +R + +Q+K
Sbjct: 125 ICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTPEQVKS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
PS +E G IP+ LG ++ + +A +GGETEAL RLK + + A
Sbjct: 185 PPS--GLEEGPIPTFDSLGQTEPLDDCR-------SAFPCRGGETEALARLKHYFWDTNA 235
Query: 360 QPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G +FS K SPWLA+GC+SPR +++++KK +A
Sbjct: 236 VATYKETRNG----MIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTA--------- 282
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W++FELLWRD+F+F+ KY +
Sbjct: 283 ---NQSTYWVIFELLWRDYFKFVALKYGN 308
>gi|443324015|ref|ZP_21052973.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
gi|442796190|gb|ELS05502.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
Length = 491
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 126/322 (39%), Positives = 187/322 (58%), Gaps = 30/322 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+R DLR+HD++ + A + ++P+YCFD R + K+S GF KTG +R+ FL+E+V+
Sbjct: 7 LIWYRRDLRLHDHKPMYQALQQEAQIIPLYCFDERQFAKTSFGFPKTGAFRSQFLLEAVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR +L GS+L+VR G PE ++ LAK + AVY H EV+ +E+ E ++ A+
Sbjct: 67 DLRNSLSQLGSNLIVRRGLPEKIIPSLAKELEISAVYFHGEVTSEELAVEAALQKALSQI 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
I VK FWG+TLYH DDLPF + ++P + FR+ V K + + +L LP D
Sbjct: 127 KISVKRFWGNTLYHPDDLPFSIEQIPELFTNFRKSVEKKSSVASSFAVPQELPPLP---D 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF--AAEYQAQPPK 363
+ G++P L DLGL S+ A KGGET AL RL + + +Y K
Sbjct: 184 INLGELPQLSDLGLEAPKFDSR-------AVLDFKGGETAALARLDSYIWSGDYLKDYKK 236
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
+ + GA++S K SPWLA+GCLSPR +++++++ A ND
Sbjct: 237 -----TRNGMLGADYSSKFSPWLALGCLSPRLIYEQVQE----YEAQRVKND-------- 279
Query: 424 GSNWLMFELLWRDFFRFITKKY 445
+ WL+FELLWRDFF FI K+
Sbjct: 280 STYWLIFELLWRDFFYFIGTKH 301
>gi|408673564|ref|YP_006873312.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
gi|387855188|gb|AFK03285.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
Length = 475
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 192/322 (59%), Gaps = 26/322 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFRNDLR+HDNE+L A ++ +V+PVY FD R + + GF +TG +RA FLIE+V
Sbjct: 5 LFWFRNDLRLHDNEALIQAT-KAGNVIPVYIFDERQFINTPLGFKRTGTFRAKFLIEAVE 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR NLQ GS+L+V+VGKPE +L +LA+ A AVYA +EV+ +E E + +K
Sbjct: 64 NLRDNLQKIGSNLIVKVGKPEEILAQLAEKYEAVAVYASKEVTQEETIIEANLSKKLKPL 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
IE++ W +TLYH DLPF++ +P + FR+KV + +IR+T +A L + D
Sbjct: 124 NIEIELVWIATLYHARDLPFQINFLPDVFTEFRKKVERSAKIRRTFDAPKTLPKVDKSVD 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+ G++P+L LG + K + + +GGET AL RL ++ + PK
Sbjct: 184 L--GEMPTLESLGYEKPKF-------DKRSVLAFRGGETSALYRLDEYI--WDKDLPKTY 232
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ + + G ++S K S WL++GC+SPR++++E+KK + A +
Sbjct: 233 KE-TRNGLVGGDYSTKFSAWLSLGCISPRTIYEEVKKYEKEVEA------------NEST 279
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
W++FEL+WRD+F FI K+ +
Sbjct: 280 YWIIFELIWRDYFHFIALKFGT 301
>gi|390942759|ref|YP_006406520.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
gi|390416187|gb|AFL83765.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Belliella baltica DSM 15883]
Length = 472
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 195/334 (58%), Gaps = 27/334 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+HD+ +L +A +S ++PVYCFDPR + +++ GF KTG +RA FL+++V
Sbjct: 7 LVWFRNDLRLHDHAALFSALEKSEEIIPVYCFDPRMFKETNLGFRKTGNHRAKFLLQAVE 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+ NLQ GS+L++ G PE ++ + AK +G A+Y EV+ +E + E +E A
Sbjct: 67 NLKNNLQKVGSNLLILHGYPEDLIPQKAKELGVQAIYFSEEVTSEEKQVENALENAAYKL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
GIE FW TL++L+DLPF + + P + FR++ K ++RKT A +K P+
Sbjct: 127 GIETASFWQITLFNLEDLPFPVNQTPEIFTQFRKECEKFSKVRKTFPAPKNIKS-PT--- 182
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+E GD P L GL A SQ A +GGE E ++RL+ + ++ K
Sbjct: 183 IEWGDFPILSKYGLENPAISSQ-------AVMVFEGGEDEGIRRLQTYF--WKNDCLKTY 233
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ + + GA++S K SPWLA+GCLSPR +F+E+K+ + +
Sbjct: 234 KE-TRNGLLGADYSSKFSPWLALGCLSPRYIFEEVKRYE------------KERKKNQST 280
Query: 426 NWLMFELLWRDFFRFITKKYSSAKKVVEAVPATA 459
WL+FEL+WRD+FRFI KK+ + V + T
Sbjct: 281 YWLIFELIWRDYFRFIAKKHGNKIFQVSGIKNTV 314
>gi|150026082|ref|YP_001296908.1| deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
gi|149772623|emb|CAL44106.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium
psychrophilum JIP02/86]
Length = 430
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 187/325 (57%), Gaps = 27/325 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +IVWF+ DLRV DNE++ A +S ++PVYCFD + + GF KTG +RA FL+E
Sbjct: 3 KTAIVWFKTDLRVEDNETIIKAILQSEQIIPVYCFDDSHFETTKYGFKKTGSFRAQFLLE 62
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ DL KNL+A GS LV+ GKPE + ++AK A V++ REVS +E K+E+ ++ +
Sbjct: 63 SLQDLDKNLRAIGSGLVITKGKPEIEIPKIAKEYKAQKVFSKREVSFEEKKTEKMVQNEL 122
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
E++ F STLYH +DLPF + +P + FR+K + IR + +++ P
Sbjct: 123 FKLRCELETFSTSTLYHAEDLPFSIRNIPDVFTNFRKKTEQDATIRTVFKKPEKINS-PK 181
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ +P+L DLGL S+ AA KGGETEA+ RL + +Q
Sbjct: 182 ---ITTLSLPTLEDLGLECKTIDSR-------AAIQFKGGETEAINRLNHYF--FQTNSI 229
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
N + + G N+S K SPWLA+GC+SPR +++E+KK A ND
Sbjct: 230 -SNYKKTRNGMVGENYSSKFSPWLALGCISPRFIYNEIKKYELQFGA----ND------- 277
Query: 423 AGSNWLMFELLWRDFFRFITKKYSS 447
S WL+FELLWRDFFRF+ KKY +
Sbjct: 278 -SSYWLIFELLWRDFFRFMFKKYQT 301
>gi|440749032|ref|ZP_20928282.1| Cryptochrome [Mariniradius saccharolyticus AK6]
gi|436482734|gb|ELP38832.1| Cryptochrome [Mariniradius saccharolyticus AK6]
Length = 475
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 186/324 (57%), Gaps = 23/324 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R IVWFRNDLR+HDN +L+ A ++ V+PVYCFDPR +G+ G +K G RA FL E
Sbjct: 4 RRIIVWFRNDLRIHDNVTLSMACEKAEEVIPVYCFDPRHFGEIDLGMEKMGNLRAKFLKE 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+VS+LR+NLQ G+DLVV G PE + LA ++ A+A++ EV+ +E + ++ +E+
Sbjct: 64 TVSELRQNLQKLGADLVVLQGFPEKEIPNLAVSLQAEAIFFSEEVTDEEKQVDDALESTA 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+GI+ + FW TL+H+DDLPF +G+ P + FR++ + + + P +
Sbjct: 124 WKKGIKTRSFWQHTLFHIDDLPFPIGQTPEVFTQFRKECEKFCKVRLHASTPNAINFP-K 182
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
++E G IP+L + GL + + KGGE E L+RL+ +
Sbjct: 183 IEIEKGQIPALSEFGLEEPEDTGR-------GVLMFKGGEQEGLRRLQTYFWNLDCLKDY 235
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
N + + GAN+S K SPWLA+GCLSPR ++ E+K+ ND
Sbjct: 236 KN---TRNGLLGANYSSKFSPWLALGCLSPRQIYWEVKRYEKERVK----ND-------- 280
Query: 424 GSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL+WRD+FRFI KK+ +
Sbjct: 281 STYWLVFELIWRDYFRFIAKKHGN 304
>gi|428776804|ref|YP_007168591.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
gi|428691083|gb|AFZ44377.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Halothece sp. PCC 7418]
Length = 483
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 188/323 (58%), Gaps = 25/323 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLRVHD+E L A+ ++P YCFD R++G + GF KTG +RA FL ESV+
Sbjct: 7 LIWYRNDLRVHDHEPLFRASKTQGQIIPFYCFDTREFGHTGFGFPKTGSFRAQFLQESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR+ L+ GS+L++RVG+PE ++ EL A+ + H EV+ +E++ E+ + ++
Sbjct: 67 NLRETLKNLGSNLMIRVGQPEIIIPELVTALNLTNLVYHAEVTAEEIRVEKALSKQLQSL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
G+ + +WGSTL+HLDDLP K+ ++P + +R+++ K EIR ++L LPS +
Sbjct: 127 GVTLTSYWGSTLHHLDDLPIKVDDLPDVFTQYRKRIEKTSEIRSCFPTPEKLPPLPS--E 184
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+ GD+P+L LG+ + + GGE L RLK + +Q K
Sbjct: 185 IATGDLPNLETLGVKLVSPDER-------GVLKFVGGERAGLDRLKDYI--WQEDCLKVY 235
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K + + G N S K SPWLA GCLSPR +++E++ E+ +
Sbjct: 236 KK-TRNGMLGTNDSSKFSPWLARGCLSPRYVYEEVQSYE------------ENRVKNDST 282
Query: 426 NWLMFELLWRDFFRFITKKYSSA 448
WL+FEL+WRD+FRF+ KY +A
Sbjct: 283 YWLIFELMWRDYFRFVCLKYGNA 305
>gi|338210188|ref|YP_004654235.1| DASH family cryptochrome [Runella slithyformis DSM 19594]
gi|336304001|gb|AEI47103.1| cryptochrome, DASH family [Runella slithyformis DSM 19594]
Length = 479
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 187/322 (58%), Gaps = 23/322 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESV 185
I WFRNDLR+HDNE A ++ V+P+Y FD R + + S G KTG +RA FL+ESV
Sbjct: 6 IYWFRNDLRLHDNEGFLKAIQDADEVIPIYVFDTRQFEEIGSLGIPKTGTFRAKFLLESV 65
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+LR NL+ +G++LV+++GKPE V+ ELA+ A+Y +E + +E E + +K
Sbjct: 66 QNLRDNLRKKGANLVIKLGKPEIVISELAREWDVTAIYTAKEATQEETDVETSLSKKLKV 125
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
I+ + FWG+TLYH DLPF + +P + FR+ V+G + + A + L
Sbjct: 126 YNIDFEVFWGATLYHPRDLPFWVSRLPDVFTDFRKVVEGKSVIRP--AFQEPIALRLPEG 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+E G +P + +L L SQ+ + AA KGGETEALQRL + ++ K
Sbjct: 184 LEFGKMPEIYELIL-----FSQLPEVDRRAAFVFKGGETEALQRLNAYL--WETDHIKFY 236
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ + + GAN+S K SPWLA GC+SPR +++E+KK A ND +
Sbjct: 237 KE-TRNGLLGANYSSKFSPWLAYGCVSPRQIYEEVKKYEAQHGA----ND--------ST 283
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FEL+WRD+FRF+ KY +
Sbjct: 284 YWLIFELVWRDYFRFLALKYGT 305
>gi|356498450|ref|XP_003518065.1| PREDICTED: blue-light photoreceptor PHR2-like, partial [Glycine
max]
Length = 298
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/180 (64%), Positives = 141/180 (78%), Gaps = 8/180 (4%)
Query: 37 SFSLPQVLPANTFFIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKST 96
SFSL + P F+QPK + QP+K+KVPTQAS+LTH+SLS ++T PSK SFKST
Sbjct: 4 SFSLSTIFP----FVQPKNIPSTTLQPSKLKVPTQASSLTHLSLS-TTTPPPSKTSFKST 58
Query: 97 LSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVY 156
NPL +PLS+ PHRP DP N +RRA+++WF NDLR+ DNE L NN+S+SVLP+Y
Sbjct: 59 ---NPLHAPLSIAPHRPRDPPNATPLRRAALIWFCNDLRLLDNECLTATNNDSLSVLPIY 115
Query: 157 CFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
FDP DYGKS+S FDKTGPYRA+FLI+SVSDLR++LQAR SDL+VRV KPETVLVELAK
Sbjct: 116 FFDPSDYGKSASDFDKTGPYRAAFLIDSVSDLRRSLQARNSDLIVRVKKPETVLVELAKV 175
>gi|373954151|ref|ZP_09614111.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
gi|373890751|gb|EHQ26648.1| cryptochrome, DASH family [Mucilaginibacter paludis DSM 18603]
Length = 493
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 190/326 (58%), Gaps = 28/326 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VWFRNDLR+HDNE L A ++ VLPV+CFD + + G KTG +R FL+E
Sbjct: 12 KTILVWFRNDLRIHDNEILVEALRKADKVLPVFCFDNFYFKITRYGTRKTGDFRTRFLLE 71
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+V+DLRK LQ G++L+VR G P ++ +LA+ VY HREV+ +E K+EA +
Sbjct: 72 AVADLRKTLQQHGAELIVRSGDPVDIIPQLAEEYHVSEVYHHREVAFEETDISAKVEAVL 131
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ + +K+F G T YH +DLPF + ++P + FR+KV + IR E + P
Sbjct: 132 WKKKLNLKHFIGHTFYHKEDLPFPIKDIPDVFTTFRKKVERDSSIRPCFETPGNISIPPI 191
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-QP 361
PG+IP+L LG + S+ A KGGETEAL+RL ++ E +
Sbjct: 192 D---HPGEIPTLQQLGFDEPVDDSR-------AVLHFKGGETEALKRLHEYFWESDCLKT 241
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + GA++S K SPWL++GCLS R ++ E+K+ + E G++
Sbjct: 242 YKTTRNG----LLGADYSSKFSPWLSVGCLSVRQVYWEVKRY-----------EQERGAN 286
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ + WL+FELLWRD+FRF+ KKY +
Sbjct: 287 DS-TYWLIFELLWRDYFRFMFKKYGN 311
>gi|332662834|ref|YP_004445622.1| DASH family cryptochrome [Haliscomenobacter hydrossis DSM 1100]
gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
Length = 454
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 188/329 (57%), Gaps = 23/329 (6%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRAS 179
++R +IVWFR DLR+HDNE+L A + V+PV+ FD R + GK+S GF KTG YRA
Sbjct: 2 TMKRRAIVWFRQDLRLHDNEALQDALRNAYEVIPVFIFDERTFKGKTSFGFPKTGKYRAQ 61
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+IESV+DLR++L+ SDL+VRVGK E +L +AK ++ +RE + +E + ++++
Sbjct: 62 FIIESVADLRQSLRKLNSDLIVRVGKTEDILFSMAKECKTSWIFCNRERTAEEARIQDEL 121
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLK 298
E + G E++Y G LY+ DLPF + P + FR++V + V +R+ + D+
Sbjct: 122 ENRLWSIGQEMRYNRGKMLYYTADLPFPIQHTPDVFTQFRKEVERIVPVREPLSKPDRTF 181
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
P + GDIPSL +LG + A S KGGETE ++RL+ + E
Sbjct: 182 N-PLSFEFPAGDIPSLEELGHNVDDFAKD-----PRAVLSFKGGETEGIKRLQYYLWETD 235
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
N + + G ++S K+SPWLA GCLSP+ ++ ELKK A
Sbjct: 236 LIK---NYKETRNGLLGGDYSSKLSPWLAQGCLSPKLIYHELKKYEAQRGA--------- 283
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL FELLWRDFFRF+ KKY +
Sbjct: 284 ---NESTYWLFFELLWRDFFRFMGKKYGN 309
>gi|448592440|ref|ZP_21651547.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
gi|445731445|gb|ELZ83029.1| deoxyribodipyrimidine photolyase [Haloferax elongans ATCC BAA-1513]
Length = 496
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 192/335 (57%), Gaps = 36/335 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
++VWFR DLR+HDNE+L A V+PVYCFDPRDYG+ S G F KTG +R
Sbjct: 6 ALVWFRRDLRLHDNEALVDACGAD-QVVPVYCFDPRDYGQQSYGGPGSFDFRKTGFHRLR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ESV+DLR +L+ RGSDLVVRVG+PE VL ++A A+GAD+V H + +E + E +
Sbjct: 65 FRLESVADLRSSLRDRGSDLVVRVGRPEAVLPDVATAVGADSVSMHTWPTPEERQVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLK 298
+ A+ D G+E + FWG TL H DDLP L +P Y FR+ V+ IR+ + D
Sbjct: 125 QQALDDVGVESRRFWGHTLTHPDDLPMDLDALPDTYTTFRKAVENDASIREPLHTPD--- 181
Query: 299 GLPSRGDV--EPGDIPSLLDL-GLSQSAAMSQVWHGGKP----AANSMKGGETEALQRLK 351
LP+R D EPG IP+L DL G +AA + P A + +GGET +R++
Sbjct: 182 -LPARPDSVPEPGAIPALSDLDGDVSNAAQVEDEPLASPNDEQATSLFEGGETAGRERVE 240
Query: 352 KFAAE-YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+ E + K ++G + G ++S K SPWL GCLSPR + E+++
Sbjct: 241 SYIWEGDHLREYKETRNG----LVGLDYSSKFSPWLNEGCLSPRYVQSEVERYE------ 290
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ S + WL FEL WRDFF+F T K+
Sbjct: 291 ------DVRVSNDSTYWLTFELRWRDFFQFQTAKH 319
>gi|302790279|ref|XP_002976907.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
gi|300155385|gb|EFJ22017.1| hypothetical protein SELMODRAFT_106065 [Selaginella moellendorffii]
Length = 499
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 196/336 (58%), Gaps = 30/336 (8%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG + SI+WFRNDLR+ DNE+L A S SVLPVYC DPR +G + F KTG
Sbjct: 20 NGKGV---SIMWFRNDLRIVDNEALFKAWASSSSVLPVYCVDPRHFGTTHYFKFPKTGEL 76
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FL+ES+ DL+KNL+ RG DLV+R G PE +L L +A+GA +YA E +E++ E
Sbjct: 77 RAQFLLESLVDLKKNLKKRGLDLVIRSGNPEFILPLLVEAVGAHTIYAQEETCSEELQVE 136
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALD 295
+ ++ ++ + +++ WG+T+YHL+DLPF +P Y FR+ V+ +R ++
Sbjct: 137 KAVKKSIGTKA-KLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCLKLPQ 195
Query: 296 QLKGLPSRGDVEPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
L LP + GD +P+L DLGL +S AA GGET A+QRL +
Sbjct: 196 TLGPLPDSLGEKVGDLDKVPNLSDLGLRPREQVSL-------AAMQFTGGETAAIQRLCE 248
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ + + N + + GA++S K SPWLA G +SPR +++E A+ K
Sbjct: 249 Y---FWTKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIYEE---------ASIK 296
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ + ++ + W++FEL+WRD+FRF++ KY ++
Sbjct: 297 YEKERTANN--STYWVLFELIWRDYFRFLSMKYGNS 330
>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
Length = 520
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 187/329 (56%), Gaps = 30/329 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE + A + ++P+Y FDPR Y G F KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYSFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEA 241
+SV DLR L+ GS L+VR GKPE V+ EL K +G+ + A H EV+ +E EEK++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVFELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ V+ FWGSTLYH DDLPF +G +P Y FR+ V+ +R + +Q+K
Sbjct: 125 ICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTPEQVKS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
PS +E G IP+ LG ++ + +A +GGETEAL RLK + + A
Sbjct: 185 PPS--GLEEGPIPTFDSLGQTEPLDDCR-------SAFPCRGGETEALARLKHYFWDTNA 235
Query: 360 QPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G +FS K SPWLA+GC+SPR +++++KK +A
Sbjct: 236 VATYKETRNG----MIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTA--------- 282
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W++FELLWRD+F+F+ KY +
Sbjct: 283 ---NQSTYWVIFELLWRDYFKFVALKYGN 308
>gi|325105098|ref|YP_004274752.1| DASH family cryptochrome [Pedobacter saltans DSM 12145]
gi|324973946|gb|ADY52930.1| cryptochrome, DASH family [Pedobacter saltans DSM 12145]
Length = 433
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 194/342 (56%), Gaps = 41/342 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +VWFRNDLR+HDNE L A +S ++PVY FDPR Y +S G KTG RA F+I+
Sbjct: 4 RTILVWFRNDLRIHDNEILIEATLKSTEIVPVYIFDPRYYTDTSYGTKKTGKLRAQFIID 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV+DL+K+L+A G DL+V GKPE VL +L K D VY HREV+ +E +E A+
Sbjct: 64 SVTDLKKSLKALGGDLLVVKGKPEEVLPQLIKEYHVDEVYHHREVASEETDISSAVEDAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ +K+F G TLYH +DLPF + ++P + FR+KV + EIR E Q+ +P
Sbjct: 124 WKSQVNLKHFIGHTLYHKEDLPFPIKDIPDLFAKFRKKVEREGEIRDPFETPGQI-SVPD 182
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KKFAAE 356
+ ++P+L DLG +S + S+KGGE+ L RL K E
Sbjct: 183 --SLASSEVPALEDLGFERSEQLDA----------SIKGGESSGLNRLNEYLWEKDLLKE 230
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Y+A+ + + G N + ++SPWL++GC+SPR ++ ELK+ +
Sbjct: 231 YKAK---------RNLLTGFNNNSQLSPWLSLGCISPRKVYWELKRY-----------EH 270
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPAT 458
E G + N L ELL+RDFFRF+ KK+S+A V A P +
Sbjct: 271 EKGGTD-NINLLFNELLFRDFFRFMFKKHSTAYFVDIAQPMS 311
>gi|436838433|ref|YP_007323649.1| cryptochrome, DASH family [Fibrella aestuarina BUZ 2]
gi|384069846|emb|CCH03056.1| cryptochrome, DASH family [Fibrella aestuarina BUZ 2]
Length = 501
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 191/327 (58%), Gaps = 29/327 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESV 185
+ WFRNDLR+HDNE A ++ VLPVY FDP + + KTG R +FL+E+V
Sbjct: 17 LYWFRNDLRLHDNEGFAAACMQARQVLPVYVFDPAAFRLLPTLNLKKTGLLRTNFLLEAV 76
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR +L+ARG DL+VRVG P VL +LA+ I ADA+YA +EV+ +E E + +K
Sbjct: 77 ADLRSSLRARGGDLIVRVGDPARVLADLAEEIEADAIYASKEVTSEETDVESALSKRLKP 136
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
I++++FW STLYH+ DLPF + ++P + FR++V K V++R + D++ G
Sbjct: 137 LNIDIEFFWTSTLYHVRDLPFNVVKLPDVFTAFRQQVEKHVQVRSLVATPDRIN---LAG 193
Query: 305 DVEPGDIPSLLDLGL-SQSAAMSQVWHGGKP---AANSMKGGETEALQRLKKFAAEYQAQ 360
+E G +P+ G +++ A++ +P AA KGGE+ AL RL + + +
Sbjct: 194 HIEAGSLPTPDTFGFDAETQAVA-----ARPDNRAAVPFKGGESVALARLNAYI--WGRE 246
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K K+ + + G ++S K S WLA GCLSPR ++ E+K+ +
Sbjct: 247 LLKTYKE-TRNGLLGEDYSSKFSAWLAHGCLSPRQLYHEIKRYE------------QERV 293
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSS 447
+ + WL+FEL+WRDFFRF+ K+ +
Sbjct: 294 ANESTYWLIFELIWRDFFRFVALKFGT 320
>gi|448729303|ref|ZP_21711620.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
gi|445795250|gb|EMA45779.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
Length = 485
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 189/332 (56%), Gaps = 36/332 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR DLR HDNE+L A +E +VLPVYCFDPR++G+++ G KTGPYRA FLIESV
Sbjct: 5 AVVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPREFGEATFGLAKTGPYRAQFLIESV 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DLR +L+ GSDL VR GKPE V+ ELA GAD V+ H + +E E + + +
Sbjct: 65 RDLRGSLREAGSDLFVRQGKPENVVSELAAEHGADIVHYHTTPATEERAVEASVTDGLDE 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALDQLKGLPSR- 303
GI + FWG TLYH++DLP ++ + + +R V+ G +R ++A + LP
Sbjct: 125 HGISSRGFWGKTLYHIEDLPTRVERIDDTFTPWRRTVEDGATVRDPLDAPTSVT-LPETV 183
Query: 304 ------GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE- 356
GD EPG IP+ DLG+ + + AA GGE+ L+RL ++ E
Sbjct: 184 SDAEGAGD-EPGTIPTPGDLGIEEHEPDER-------AAIDFAGGESAGLRRLTEYVWEG 235
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK-TATSISAASKWND 415
+ K ++G + A++S K S WLA+GCLSPR + + +++ IS S +
Sbjct: 236 DHLREYKETRNG----LLDADYSSKFSAWLALGCLSPRLIHEHVERYECERISNDSTY-- 289
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRDF F +K+ S
Sbjct: 290 -----------WLVFELLWRDFMTFQFEKHGS 310
>gi|383322099|ref|YP_005382952.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325268|ref|YP_005386121.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491152|ref|YP_005408828.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436419|ref|YP_005651143.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|97048023|sp|P77967.2|CRYD_SYNY3 RecName: Full=Cryptochrome DASH
gi|28374085|pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|28374086|pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
gi|339273451|dbj|BAK49938.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|359271418|dbj|BAL28937.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274588|dbj|BAL32106.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277758|dbj|BAL35275.1| DNA photolyase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958277|dbj|BAM51517.1| DNA photolyase [Bacillus subtilis BEST7613]
Length = 489
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 189/324 (58%), Gaps = 30/324 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+HD+E L+ A +++ VYC+DPR + ++ GF KTGP+R++FL +SV
Sbjct: 9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQ 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L ++LQ G+ L+V G PE V+ ++AK I A +Y HREV+ +E+ E + +
Sbjct: 69 NLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTIL 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV--KGVEIRKTIEALDQLKGLPSRG 304
GIE K +WGSTL H +DLPF + ++P + FR+ + K + IR A QL LPS
Sbjct: 129 GIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL--LPS-- 184
Query: 305 DVEPGDIPSL-LDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
P++ L+L Q+ + + + +GGET L RL+ + + K
Sbjct: 185 -------PNIKLELTAPPPEFFPQI-NFDHRSVLAFQGGETAGLARLQDYF--WHGDRLK 234
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
K+ + + GA++S K SPWLA+GCLSPR ++ E+K+ + S
Sbjct: 235 DYKE-TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYE------------QERVSND 281
Query: 424 GSNWLMFELLWRDFFRFITKKYSS 447
++WL+FELLWRDFFRF+ +KY +
Sbjct: 282 STHWLIFELLWRDFFRFVAQKYGN 305
>gi|406662895|ref|ZP_11070977.1| Cryptochrome DASH [Cecembia lonarensis LW9]
gi|405553063|gb|EKB48369.1| Cryptochrome DASH [Cecembia lonarensis LW9]
Length = 474
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 189/321 (58%), Gaps = 27/321 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFRNDLRVHD+ L A+ ++ V+PVYCFDPR++GK + DKTG +RA FLIESV
Sbjct: 6 IVWFRNDLRVHDHAPLFYASQKAEEVIPVYCFDPRNFGKVNLEIDKTGNHRARFLIESVD 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+ NL G DLV+ GKPE +LV++AK DA++ EV+ +E K E +E
Sbjct: 66 NLKNNLVNLGGDLVILQGKPEELLVDIAKKYQVDAIFFSEEVTSEEKKVELNLEGHAWKH 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
GI+ +W S+LY++ DLPF + + P + FR++ K +++ T+ Q+K + D
Sbjct: 126 GIKTTAYWQSSLYNIQDLPFPVMQTPEVFTQFRKECEKFAKVQPTLPTPKQIKFPNNLND 185
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ-AQPPKG 364
+ G++P L GL + S+ + KGGETE ++RL+ + E + K
Sbjct: 186 L--GEMPELSTFGLKEPDHSSR-------SVLVFKGGETEGIRRLQAYFWEKDLLKVYKE 236
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + G+++S K S WL+MGCLSPR +++E+K+ +
Sbjct: 237 TRNG----LLGSDYSSKFSAWLSMGCLSPRFIYEEVKRYE------------KERKKNQS 280
Query: 425 SNWLMFELLWRDFFRFITKKY 445
+ WL+FEL+WRD+FRFI KK+
Sbjct: 281 TYWLIFELIWRDYFRFICKKH 301
>gi|428773120|ref|YP_007164908.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
gi|428687399|gb|AFZ47259.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
Length = 486
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 182/324 (56%), Gaps = 26/324 (8%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++WFRNDLR+HD + + A + E ++P YCFD R Y ++S GF KTG YRA +IESV
Sbjct: 5 LIWFRNDLRLHDQKCIYRAISAEPKYIIPFYCFDDRTYTQTSFGFPKTGKYRAKLIIESV 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DL+K+LQ GS+LVV+ GK E + ++ + VY +E + +E E+K+ +
Sbjct: 65 TDLQKSLQKIGSNLVVKKGKTEEEISKIVEKYQITEVYFSKEATAEERAMEKKLTKILDK 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
+ +++K FW STLY DDLPF + E+P + FR++V K E+ T + L LP
Sbjct: 125 KQVKIKTFWQSTLYFPDDLPFSIKELPDLFTNFRKQVEKKAEVYNTFKTPSSLPPLPKNI 184
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
D+ G IP+L DLGL + + + GGETEA++RL+ + E
Sbjct: 185 DI--GKIPTLSDLGLEEFTKDDR-------GVLTFMGGETEAIKRLQYYLWE---TDNIS 232
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
N + + G ++S K SPWLA GCLSPR ++ E++K +
Sbjct: 233 NYKKTRNGMLGGDYSSKFSPWLAQGCLSPRLIYTEIEKYE------------QERVKNDS 280
Query: 425 SNWLMFELLWRDFFRFITKKYSSA 448
+ WL+FELLWRDFFRF KY ++
Sbjct: 281 TYWLIFELLWRDFFRFTCLKYGNS 304
>gi|427722807|ref|YP_007070084.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
gi|427354527|gb|AFY37250.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Leptolyngbya sp. PCC 7376]
Length = 518
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 192/320 (60%), Gaps = 23/320 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+R DLR+HD++ L TA + ++P+YCFD R++ +++ GF KTG +R FL+ESV+
Sbjct: 7 LLWYRRDLRLHDHKPLITALQQQAEIIPLYCFDSREFTQTAFGFPKTGNFRGQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++LQ +GS+L++ GKPE ++ +L + D VY HREV+ +E E++++ + +
Sbjct: 67 NLRRSLQQKGSNLLIYSGKPEVIISQLCRQFQIDTVYWHREVTAEETHIEKRLQKNLSQQ 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+ V FWG+TL+ +++PF + ++P + FR+ V K I + + +L LPS
Sbjct: 127 NVSVGTFWGTTLHEPEEMPFGIPQVPEVFTQFRKTVEKYANIVQALPTPQELPPLPSELA 186
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+ G++P+L LGLS + + + +GGET AL+RL+ + ++ K
Sbjct: 187 MALGELPTLKQLGLSTPES-------DRRGVLAFQGGETAALERLQDYF--WRGNHLKSY 237
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K + + G ++S K SPWLA+GCLS R + ++ + T A ND +
Sbjct: 238 KQ-TRNGLLGGDYSSKFSPWLALGCLSARQIAAQVSRYETERVA----ND--------ST 284
Query: 426 NWLMFELLWRDFFRFITKKY 445
WL+FELLWRD+FR+I+ K+
Sbjct: 285 YWLIFELLWRDYFRWISAKH 304
>gi|302797733|ref|XP_002980627.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
gi|300151633|gb|EFJ18278.1| hypothetical protein SELMODRAFT_268379 [Selaginella moellendorffii]
Length = 499
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 194/336 (57%), Gaps = 30/336 (8%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG + SI+WFRNDLR+ DNE+L A S SVLPVYC DPR +G + F KTG
Sbjct: 20 NGKGV---SIMWFRNDLRIVDNEALFKAWASSSSVLPVYCVDPRHFGTTHYFKFPKTGEL 76
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FL+ES+ DL+KNL+ RG DLV+R G PE +L L +A+GAD +YA E +E++ E
Sbjct: 77 RAQFLLESLVDLKKNLKKRGLDLVIRSGNPEFILPSLVEAVGADTIYAQEETCSEELQVE 136
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALD 295
+ ++ ++ + +++ WG+T+YHL+DLPF +P Y FR+ V+ +R ++
Sbjct: 137 KAVKKSIGTKA-KLELVWGTTMYHLNDLPFTTARLPDVYTQFRKAVESSSRVRPCLKLPQ 195
Query: 296 QLKGLPSRGDVEPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
L LP + GD +P+L LGL S AA GGET A+QRL +
Sbjct: 196 TLGPLPDSLGEKVGDLDKVPNLSHLGLRPREQSSL-------AAMQFAGGETAAIQRLCE 248
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ + + N + + GA++S K SPWLA G +SPR + +E A+ K
Sbjct: 249 Y---FWTKNCLRNYKETRNGMLGADYSTKFSPWLASGSISPRFIHEE---------ASIK 296
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ + ++ + W++FEL+WRD+FRF++ KY ++
Sbjct: 297 YEKERTANN--STYWVLFELIWRDYFRFLSMKYGNS 330
>gi|147902555|ref|NP_001084438.1| cryptochrome DASH [Xenopus laevis]
gi|82239825|sp|Q75WS4.1|CRYD_XENLA RecName: Full=Cryptochrome DASH
gi|41688006|dbj|BAD08601.1| cryptochrome dash [Xenopus laevis]
Length = 523
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 188/327 (57%), Gaps = 30/327 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE L+ A+ + ++P+YCFDPR Y G F KTGP+R FL+
Sbjct: 6 RVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLL 65
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEA 241
ESV DLR L+ +GS+L++R GKPE V+ +L K +G AV H E + +E E ++
Sbjct: 66 ESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQ 125
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
A GI+ + FWGSTLYH +DLPF+ + +P Y FR+ V+ ++R T + D+LK
Sbjct: 126 ACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPDKLKP 185
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ- 358
LPS +E G +PS D Q ++ A GGE++ALQRL+ + E
Sbjct: 186 LPS--GLEEGSVPSHED--FDQQDPLTD-----PRTAFPCSGGESQALQRLEHYFWETNL 236
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G ++S K +PWLA+GC+SPR +++++ K +A
Sbjct: 237 VASYKDTRNG----LIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKERTA--------- 283
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W++FELLWRD+FRF+ KY
Sbjct: 284 ---NQSTYWVIFELLWRDYFRFVALKY 307
>gi|405958349|gb|EKC24485.1| Eukaryotic translation initiation factor 2-alpha kinase 4
[Crassostrea gigas]
Length = 1998
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 186/327 (56%), Gaps = 32/327 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLI 182
+ I FRNDLR+HDNE L AN + VLP+Y FDPR +G + GF KTGP+R FL+
Sbjct: 6 KTIICLFRNDLRIHDNEVLQWANRNADFVLPMYIFDPRHFGGTYHFGFPKTGPHRTKFLL 65
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE-KIEA 241
ES+ DLRKNL+ RGS L VR GKP L ++ +G +V H V H+EV EE +E
Sbjct: 66 ESIQDLRKNLKIRGSGLAVRKGKPHEELKKMIDMLGQSSV--HSVVFHEEVTQEELDVEK 123
Query: 242 AMKDE-GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKG 299
++K G+ +K FWG TLYH +DLPF + P Y FR++V+ +RK ++ +
Sbjct: 124 SIKKHCGVNIKTFWGHTLYHREDLPFSPSQTPDVYTQFRKRVESQAPVRKCLDMPKSFRP 183
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LP VE G+IP+ DLG+ + + GGE+ A+ RL + E A
Sbjct: 184 LPE--GVEEGEIPTNKDLGVEDPVTDPR-------SVVDFLGGESVAIDRLHHYLWETDA 234
Query: 360 QPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + GA++S K S WLA+G LSPR +F E+K+ N+ S
Sbjct: 235 IATYKETRNG----LLGADYSTKFSVWLALGSLSPRHIFWEVKRYE---------NERTS 281
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKY 445
+S + W++FEL+WRD+FR++ KY
Sbjct: 282 NNS---TYWVLFELIWRDYFRYVAMKY 305
>gi|170079261|ref|YP_001735899.1| DNA photolyase [Synechococcus sp. PCC 7002]
gi|169886930|gb|ACB00644.1| DNA photolyase [Synechococcus sp. PCC 7002]
Length = 514
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 187/322 (58%), Gaps = 25/322 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+R DLR+HD++ L A + + P YCFDPR +G F KTG +R FL E++
Sbjct: 7 LLWYRRDLRLHDHQPLQEALAQQAQIFPFYCFDPRGFGSIGLDFPKTGAFRGQFLREAIQ 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR+NL+A+GSDL+VR PE ++ +L + D VY HREV+ +E + E K+ A++++
Sbjct: 67 DLRQNLRAKGSDLIVRQDIPEKLIPDLCQQWQIDVVYCHREVTAEETRVERKLRQALQEQ 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
G+ V+ FWG+TL+ DLPF + E+P + FR+ V K I + QL LP
Sbjct: 127 GVRVETFWGTTLHDPGDLPFGINEVPEVFTQFRKDVEKYAAIASPVPTPTQLPPLPE--T 184
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
V PG+IPSL DLGL + + G P +KGGET ++RL+ + ++ K
Sbjct: 185 VAPGEIPSLQDLGLPEPTIDPR---GVLP----LKGGETAGMKRLQAYF--WEGDRLKVY 235
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ + + GA++S K SPWLA+GCLS R + ++ + A + +
Sbjct: 236 KE-TRNGLLGADYSSKFSPWLALGCLSARYIAAQVAEYEQKRIANN------------ST 282
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL+FELLWRD+FR+I K+ +
Sbjct: 283 YWLIFELLWRDYFRWICAKHGN 304
>gi|449492091|ref|XP_004176864.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Taeniopygia
guttata]
Length = 488
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/326 (37%), Positives = 185/326 (56%), Gaps = 30/326 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIE 183
+I R DLR HDN+ L+ A + + V+P+YCFDPR Y G KTGP+R FL+E
Sbjct: 7 TAICLLRCDLRAHDNQVLHWAQHNADFVIPLYCFDPRHYLGTHCYRLPKTGPHRLRFLLE 66
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-DAVYAHREVSHDEVKSEEKIEAA 242
SV DLR+ L+ +GS LVVR GKPE V+ +L +G+ AV H E + +E+ E+ +
Sbjct: 67 SVKDLRETLKKKGSTLVVRKGKPEDVVCDLITQLGSVTAVVFHEEATQEELDVEKGLCQV 126
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVK-GVEIRKTIEALDQLKGL 300
+ G++++ FWGSTLYH DDLPF+ + +P Y F + ++ G ++R T+ DQLK
Sbjct: 127 CRQHGVKIQTFWGSTLYHRDDLPFRPIDRLPDVYTHFEKGLESGAKVRPTLRMADQLK-- 184
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ-A 359
P +E G IP++ D G + A GGET+AL RL+ + +
Sbjct: 185 PLAPGLEEGSIPTMEDFGQKDPVDDPR-------TAFPCSGGETQALMRLQYYFWDTNLV 237
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
K ++G + G ++S K +PWLA+GC+SPR ++++++K +A
Sbjct: 238 ASYKETRNG----LVGMDYSTKFAPWLALGCISPRYIYEQIQKYERERTA---------- 283
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKY 445
+ W++FELLWRD+FRF+ KY
Sbjct: 284 --NESTYWVLFELLWRDYFRFVALKY 307
>gi|110637463|ref|YP_677670.1| deoxyribodipyrimidine photo-lyase type I [Cytophaga hutchinsonii
ATCC 33406]
gi|110280144|gb|ABG58330.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cytophaga hutchinsonii ATCC 33406]
Length = 434
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 127/342 (37%), Positives = 186/342 (54%), Gaps = 27/342 (7%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ SIVWF+ DLR+HDNE+L A +S ++PVYC D + + GF KTG +RA FL+E
Sbjct: 2 KRSIVWFKTDLRLHDNETLVRAIEQSDEIIPVYCLDEDHFKITPFGFQKTGNFRAQFLLE 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++DL NL+ GS L+V GKPET L ++ K A V+A REV+++E ++E ++E +
Sbjct: 62 SLNDLDTNLRKLGSGLIVVRGKPETELYKIVKQYEAFKVFAKREVAYEEQQTEARVEKEI 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
G + F STLYH DLPF + ++P + FR+KV K IR + +K P+
Sbjct: 122 WKLGCTFESFSTSTLYHAQDLPFSIKDIPEVFTNFRKKVEKESSIRSVFQKPAHIKS-PA 180
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ +P++ LGL + A GGE+E +RL + E Q
Sbjct: 181 MPQLR---LPTVKGLGLQPVIQDPR-------AVMKFTGGESEGCKRLTSYLFETQLISH 230
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
N D + G+++S K SPWLA+GCLSPR ++ ELKK + SA
Sbjct: 231 YKN---TRDGMIGSDYSTKFSPWLALGCLSPREIYTELKKYESRFSA------------N 275
Query: 423 AGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGAL 464
+ WL+FELLWRD+FRF+ KK+ + + +A L
Sbjct: 276 ESTYWLIFELLWRDYFRFMMKKHKHQFFLYSGIKDSANASGL 317
>gi|448734435|ref|ZP_21716661.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
gi|445800483|gb|EMA50838.1| deoxyribodipyrimidine photolyase [Halococcus salifodinae DSM 8989]
Length = 479
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 187/324 (57%), Gaps = 26/324 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR DLR HDNE+L A +E +VLPVYCFDPR++ ++ KTGPYRA FL++SV
Sbjct: 5 AVVWFRTDLRTHDNEALVRAVDEYDTVLPVYCFDPREFDETMFDLPKTGPYRARFLVDSV 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DLR++L+ G DL+VR GK E V+ +LA GAD V+ H + +E E + + +
Sbjct: 65 RDLRRSLRQAGGDLLVRQGKTENVVPQLAAEHGADIVHYHTTPATEERAIENGVTDGLDE 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALDQLKGLPSRG 304
GI+ + FWG TLYH++DLP ++ + + +R+ V+ G +R ++A + LP
Sbjct: 125 HGIDSRDFWGKTLYHVEDLPTRVERIDDTFTPWRQTVEDGATVRDPLDAPTSIV-LPESA 183
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE-YQAQPPK 363
EPG IP+ DLG+ + + AA GGE+ L+RL ++ E + K
Sbjct: 184 GDEPGTIPTPGDLGIEEREPDDR-------AAIEFVGGESAGLRRLTEYVWEGDHLREYK 236
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
++G + GA++S K S WLA+GCLSPR + + +++ A ND
Sbjct: 237 ETRNG----LLGADYSSKFSAWLAVGCLSPRLIHEHVERYERERVA----ND-------- 280
Query: 424 GSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRDF F +K+ +
Sbjct: 281 STYWLVFELLWRDFMTFQFEKHGA 304
>gi|301617223|ref|XP_002938047.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome DASH-like [Xenopus
(Silurana) tropicalis]
Length = 523
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 187/331 (56%), Gaps = 30/331 (9%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRA 178
AA R I RNDLR+HDNE L+ A+ + ++P+YCFDPR YG + F KTGP+R
Sbjct: 2 AARARVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYGGTHYFNFPKTGPHRL 61
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEE 237
FL+ESV DLR L+ RGS+L++R GKPE ++ L K +G AV H EV+ + S
Sbjct: 62 KFLLESVQDLRNTLKERGSNLLLRRGKPEEIIAGLVKQLGNVSAVTLHEEVTVVPLYSYN 121
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEALD 295
I G+ + FWGSTLYH +DLPF+ + +P Y FR+ + ++R T + D
Sbjct: 122 PILWPPDWSGLRYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAAETQGKVRSTFQMPD 181
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
+LK LPS +E G +P+ D Q ++ +A GGET+ALQRL +
Sbjct: 182 RLKPLPS--GLEEGSVPTHQD--FDQQDPLTD-----PRSAFPCCGGETQALQRLHHYFW 232
Query: 356 EYQ-AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
E K ++G + G ++S K +PWLA+GC+SPR ++++++K +A
Sbjct: 233 ETNLVASYKDTRNG----LIGIDYSTKFAPWLALGCISPRYIYEQIRKYEKERTA----- 283
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W++FELLWRD+FRF+ KY
Sbjct: 284 -------NQSTYWVIFELLWRDYFRFVALKY 307
>gi|448578492|ref|ZP_21643927.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
gi|445727033|gb|ELZ78649.1| deoxyribodipyrimidine photolyase [Haloferax larsenii JCM 13917]
Length = 508
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 189/346 (54%), Gaps = 46/346 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG----FD--KTGPYRAS 179
++VWFR DLR+HDNE+L A V+PVYCFDPRDY + S G FD KTG +R
Sbjct: 6 ALVWFRRDLRLHDNEALVDACGAD-RVVPVYCFDPRDYCQQSYGGPDSFDVRKTGLHRLR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ESV+DLR +L+ RGSDLVVR+G+PE VL ++A A+GAD+V H + +E + E +
Sbjct: 65 FRLESVADLRSSLRDRGSDLVVRIGRPEAVLPDVATAVGADSVSMHTWPTPEERQVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
+ A+ D G+E + FWG TL H DDLP LG +P Y FR K VE +I
Sbjct: 125 QQALDDVGVEPRRFWGHTLTHPDDLPMDLGALPDTYTTFR---KAVENDASIREPLHTPE 181
Query: 300 LPSRGDV--EPGDIPSLLDLGLSQSAAM-----------------SQVWHGGKPAANSMK 340
LP+ D EPG+IP+L DL S A+ S+ + A +
Sbjct: 182 LPALPDSVPEPGEIPALSDLDEDVSNAVQAEDEPLASPNNEQATPSEQATPSEQAIPLFE 241
Query: 341 GGETEALQRLKKFAAE-YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 399
GGET +R++ + E + K ++G + G ++S K SPWL GCLSPR + E
Sbjct: 242 GGETAGRERVESYIWEGDHLREYKETRNG----LVGRDYSSKFSPWLNEGCLSPRYVQSE 297
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+++ + S + WL FEL WRDFF+F T K+
Sbjct: 298 VERYE------------DVRVSNDSTYWLTFELRWRDFFQFQTAKH 331
>gi|434388808|ref|YP_007099419.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
gi|428019798|gb|AFY95892.1| cryptochrome, DASH family [Chamaesiphon minutus PCC 6605]
Length = 503
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 189/325 (58%), Gaps = 31/325 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+RNDLR+HD++ L A + S++P YCFD R +G++S GF KTG +RA FL+ESV+
Sbjct: 7 LIWYRNDLRLHDHQPLTQALKDGASIIPFYCFDDRQFGQTSFGFPKTGGFRAQFLLESVA 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
D + + ++ GS+L++R G E ++ +L + +G VY H+EV+ +E+ +EAA+K
Sbjct: 67 DFQHSYRSLGSELIIRRGLTEEIIPQLVEPLGITDVYYHQEVTPEEIAVSTALEAALKAV 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK--TIEALDQLKGLPSRG 304
+ + FWG TL+ L DLPF L +P + FR++V+ RK T L LP
Sbjct: 127 NVNCRSFWGHTLHLLQDLPFTLPNVPELFTNFRKEVE----RKAPTPTCLPAPTSLPPLS 182
Query: 305 -DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY-QAQPP 362
+++PG +P++ DL ++ S+ + +GGET + RL ++ E + +
Sbjct: 183 VNIDPGTLPTIEDLRVTAPQPDSR-------RVLAYRGGETAGIDRLNEYIWERDRLRVY 235
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++G + GA++S K S WLA+GCLSPR ++ ++KK +
Sbjct: 236 KETRNG----MLGADYSSKFSAWLALGCLSPRYIYQQVKKYE------------DERIEN 279
Query: 423 AGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRD+FRFI K+ +
Sbjct: 280 DSTYWLIFELLWRDYFRFICAKHGN 304
>gi|432928263|ref|XP_004081133.1| PREDICTED: cryptochrome DASH-like [Oryzias latipes]
Length = 521
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 185/336 (55%), Gaps = 28/336 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE A + ++P+YCFDPR Y G + F KTGP+R FL+
Sbjct: 5 RIVICLLRNDLRLHDNELFFWAQKNADHIVPLYCFDPRHYVGTYNFNFPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-DAVYAHREVSHDEVKSEEKIEA 241
+SV DLR L ++GS+LVVR GKPE V+ +L K +G+ +V H EV+ +E+ E+K++
Sbjct: 65 DSVRDLRNTLLSKGSNLVVRRGKPEEVVADLIKQLGSVSSVAFHEEVASEELNVEKKVKE 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKG 299
++V WGSTL+H DDLPF + +P Y FR+ V+ +R D+L
Sbjct: 125 VCAQMEVKVHTCWGSTLFHRDDLPFPHMARLPDVYTEFRKAVESKSRVRPVFPTPDRLNS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LP +E G IP+ DL ++ + +A GGE++AL RLK + + A
Sbjct: 185 LPP--GLEGGAIPTAEDLEQTEPETDPR-------SAFPCSGGESQALARLKHYFWDTDA 235
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
+ + G ++S K SPWLAMGC+SPR ++ ++KK +A
Sbjct: 236 V---ATYKETRNGLIGVDYSTKFSPWLAMGCISPRYIYHQIKKYEQERTA---------- 282
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAV 455
+ W++FELLWRD+F+F+ KY + ++ +
Sbjct: 283 --NQSTYWVIFELLWRDYFKFVGVKYGNKMFFIKGL 316
>gi|326500588|dbj|BAK06380.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/346 (38%), Positives = 193/346 (55%), Gaps = 50/346 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
S+VWFR+DLRV DNE+L A S +VLPVYC DPR ++ GF KTG RA FLI
Sbjct: 97 VSVVWFRSDLRVLDNEALARAWAASGAVLPVYCVDPRVLAGATHRFGFPKTGALRAQFLI 156
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NLQ RG DL+VR GKPE +L E+AKA+ A VYAH+E +E+ E +
Sbjct: 157 ECLGDLKQNLQKRGLDLLVRHGKPEDILPEIAKAVSAHTVYAHKETCSEELLVEHLVRRG 216
Query: 243 MKDEGI------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT 290
++ I +++ WG+T+YH+DDLPF + +P Y FR K VE + +
Sbjct: 217 LEKVIIPQGGASNKSLSPKLQLIWGATMYHIDDLPFPVSNLPDVYTQFR---KAVESKSS 273
Query: 291 IEALDQ----LKGLPSRGDVEP---GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGE 343
+ + + L PS G E G IP+L LGLS + + + GGE
Sbjct: 274 VRSCSKLPPSLGPAPSSGLDEIGGWGSIPTLESLGLSVTKSEKGM---------RFVGGE 324
Query: 344 TEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 402
+ AL R+ + F Q + K ++G + G ++S K SPWLA G LSPR + +E+++
Sbjct: 325 SAALGRVHEYFWKNDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLSPRYVCEEVRR 380
Query: 403 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
A ND + W++FEL+WRD+FRF+++KY ++
Sbjct: 381 YEKQRVA----ND--------STYWVLFELIWRDYFRFLSEKYGNS 414
>gi|86608285|ref|YP_477047.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556827|gb|ABD01784.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 486
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/324 (36%), Positives = 187/324 (57%), Gaps = 29/324 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD-KTGPYRASFLIESV 185
++WFR DLR+ D++ L A + ++P+YC DPR +G++S G +T P+R FL+ES+
Sbjct: 4 LLWFRTDLRLLDHQPLTRACQQGSPLIPLYCLDPRQFGETSLGLRPRTSPFRGQFLLESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR+ L++RGSDLV+R G+PE V+ LA+ G +AVYAH EV +E + +E A++
Sbjct: 64 ADLRQQLRSRGSDLVIRQGQPEQVIPTLAQEWGVEAVYAHEEVGTEEKEVAAAVERALRS 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPSRG 304
GI ++ WG TLYH +DLPF L ++P + FR++V+G IR +
Sbjct: 124 LGIRLQVDWGHTLYHPEDLPFCLSQLPELFTRFRKQVEGSTPIRDPLPIPSIPP---LPS 180
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY-QAQPPK 363
++PG +P+L LGLS A + A + GG T A RL+ + + + + K
Sbjct: 181 GLDPGPLPTLASLGLSSPARDPR-------ARFTYTGGSTAAHARLQTYFWDLDRLRIYK 233
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
++G D + S ++S WLA+GC+SPR+++ E+K+ +
Sbjct: 234 ETRNGMLDP----DDSSRLSAWLALGCISPRTVYAEVKRYE------------QERVRNE 277
Query: 424 GSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRD+FRFI K+ +
Sbjct: 278 STYWLVFELLWRDYFRFILAKHGA 301
>gi|294507180|ref|YP_003571238.1| deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
gi|294343508|emb|CBH24286.1| Deoxyribodipyrimidine photo-lyase [Salinibacter ruber M8]
Length = 483
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 177/322 (54%), Gaps = 25/322 (7%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VW RNDLRV D+ L A + V+PVYCFDPR +G + K RA FL ES
Sbjct: 4 TALVWIRNDLRVRDHAPLRYAADHYDQVIPVYCFDPRHFGTTMFDLPKMSSIRARFLRES 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
V DLR ++Q G+DLVVR G+PE +L EL + GA+ V +E+ +E E +E A++
Sbjct: 64 VQDLRDSVQDLGADLVVRRGRPEDILPELVRQTGANEVLQFQEIGGEEEDVETAVEDALR 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
D G +FWG TLYH+DD+PF ++P Y FR+ V K +R T++A D L LP
Sbjct: 124 DTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDSLLPLPE 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
D+ PG IP+L +LG + + G P +GGE+ R+ ++ ++
Sbjct: 184 --DLNPGSIPTLDELGFDDDGTVDE--RGVLP----FRGGESRGHDRIDEYI--WRGDFL 233
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K K + + GAN+S K S WLA GC++PR + +E+++ +
Sbjct: 234 KKYK-ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEVERYE------------DQRVDN 280
Query: 423 AGSNWLMFELLWRDFFRFITKK 444
+ W+ FEL+WRDFF ++T K
Sbjct: 281 KSTYWMKFELIWRDFFSYVTWK 302
>gi|424841446|ref|ZP_18266071.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
gi|395319644|gb|EJF52565.1| cryptochrome, DASH family [Saprospira grandis DSM 2844]
Length = 460
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 172/324 (53%), Gaps = 28/324 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYG-KSSSGFDKTGPYRASFLIESV 185
I WFR DLR+HDNE L A S V PVY FD R +G K+ SGF KTGP R F+IE+V
Sbjct: 12 IAWFRLDLRLHDNEMLTEAIKASEEVYPVYVFDERTFGGKTESGFAKTGPRRCQFIIEAV 71
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DL++ LQ G DL++R GK E L ELA+ + V+ +RE +++E + ++E +
Sbjct: 72 ADLKQQLQTLGIDLIIRRGKAEEELFELAQELKTGWVFCNRERTYEEELQQNRLEEKLWS 131
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA-LDQLKGLPSRG 304
G E+++F G LY+ DLPF + P + FR K VE I A L + + P
Sbjct: 132 IGQEIRFFRGKMLYYTQDLPFPIAHTPDIFTQFR---KEVEKLTPIRAPLPKPQAFPPWS 188
Query: 305 DVEP-GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
P GD+P L D G + KGGETE L+RL+ + E
Sbjct: 189 HRLPLGDLPQLSDFGWEMPPQDPRT-------VLQFKGGETEGLKRLQYYLWESDC---I 238
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
+ + + GA++S K SPWLA GCLSP+ ++ E+K+ + +
Sbjct: 239 ASYKETRNGLLGADYSSKFSPWLAQGCLSPKQIYAEIKRYE------------KERTKNK 286
Query: 424 GSNWLMFELLWRDFFRFITKKYSS 447
+ WL FELLWRDFFR + KKY S
Sbjct: 287 STYWLYFELLWRDFFRLMGKKYGS 310
>gi|83814331|ref|YP_445305.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
gi|83755725|gb|ABC43838.1| deoxyribodipyrimidine photolyase [Salinibacter ruber DSM 13855]
Length = 483
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 177/322 (54%), Gaps = 25/322 (7%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VW RNDLRV D+ L A + V+PVYCFDPR +G + K RA FL ES
Sbjct: 4 TALVWIRNDLRVRDHAPLRYAADHYDQVIPVYCFDPRHFGTTMFDLPKMSSIRARFLRES 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
V DLR ++Q G+DLVVR G+PE +L EL + GA+ V +E+ +E E +E A++
Sbjct: 64 VQDLRDSVQDLGADLVVRGGRPEDILPELVRQTGANEVLQFQEIGGEEEDVETAVEDALR 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
D G +FWG TLYH+DD+PF ++P Y FR+ V K +R T++A D L LP
Sbjct: 124 DTGATPGFFWGKTLYHIDDVPFDGPDDIPKVYTNFRKAVEKKSTVRPTLDAPDSLLPLPE 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
D+ PG IP+L +LG + + G P +GGE+ R+ ++ ++
Sbjct: 184 --DLNPGSIPTLDELGFDDDGTVDE--RGVLP----FRGGESRGHDRIDEYI--WRGDFL 233
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K K + + GAN+S K S WLA GC++PR + +E+++ +
Sbjct: 234 KKYK-ATRNGLLGANYSAKFSAWLAHGCITPRQIHEEVERYE------------DQRVDN 280
Query: 423 AGSNWLMFELLWRDFFRFITKK 444
+ W+ FEL+WRDFF ++T K
Sbjct: 281 KSTYWMKFELIWRDFFSYVTWK 302
>gi|86605025|ref|YP_473788.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86553567|gb|ABC98525.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 488
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 186/327 (56%), Gaps = 32/327 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A ++WFR DLR+ D++ L A + ++P+YC DPR +G+++ GF KTGP+RA FL+ES
Sbjct: 2 AVLLWFRTDLRLLDHQPLTRACQQGSFLIPLYCLDPRHFGRTAFGFPKTGPFRAQFLLES 61
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DLR+ L+ARGSDLV+R G+PE V+ LA+ G AVYAH EV +E ++ A++
Sbjct: 62 LADLRQQLRARGSDLVIRQGQPEQVIPALAREWGVKAVYAHEEVGTEEEAVARALQQALQ 121
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA-LDQLKGLPSR 303
GI + WG TLYH DLPF L ++P + FR++ VE + I A L P
Sbjct: 122 PLGIPLHLEWGHTLYHPADLPFALADLPEVFTRFRQQ---VEAKAAIRAPLPIPSLPPLP 178
Query: 304 GDVEPGDIPSLLDLGLSQ---SAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
++PG +P+L +LGLS V+ GG AA + L RL+ +
Sbjct: 179 PGLDPGPLPTLAELGLSLPPPDPRARFVYAGGSTAAQARLQTYIWDLDRLRVY------- 231
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G D N S ++S WLA+GCLSPR+++ E+K+ E
Sbjct: 232 --KETRNGMLDP----NDSSRLSAWLALGCLSPRTVYAEVKRYE------------EERV 273
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRD+FRFI K+ +
Sbjct: 274 RNESTYWLVFELLWRDYFRFILAKHGA 300
>gi|448583117|ref|ZP_21646586.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445730074|gb|ELZ81666.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 504
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 135/349 (38%), Positives = 184/349 (52%), Gaps = 47/349 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+HDNE+L A + + VLPVYC DPR+YG G FDKTG +RA
Sbjct: 6 SLAWFRRDLRLHDNEALAAACD-ADGVLPVYCLDPREYGDRPFGGPDSFDFDKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES+SDLR +L+ RGSDLVVR G PE+VL ELA + AD V H + +E E +
Sbjct: 65 FRLESLSDLRSSLRERGSDLVVREGTPESVLPELAATVDADFVTVHTRPTPEESSVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E + +G++++ FWG TL HLDDLP L E+P Y FR+ V+ + E D +
Sbjct: 125 ERELGGDGVDLRRFWGHTLTHLDDLPMALSEVPDTYTTFRKAVESAV--EGDEGGDAGRS 182
Query: 300 LPSRGDVEP---------------------GDIPSLLDLGLSQSAAMSQVWHGGKPAANS 338
S GD +P GD+PSL L + A ++ S
Sbjct: 183 GESAGDGDPAGRDPLSEPDVPPLPVDAPVAGDLPSLSTLVGTADAESARA--SDDRGVLS 240
Query: 339 MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 398
GGET AL R++ + + + K+ + + GA++S K SPWL GCLSPRS+
Sbjct: 241 FDGGETAALDRVESYI--WTGDHLREYKE-TRNGMLGADYSSKFSPWLNEGCLSPRSVKA 297
Query: 399 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
E+ + ND + WL+FEL WRDFF+F K+ S
Sbjct: 298 EVDRYEDRRVE----ND--------STYWLVFELRWRDFFQFQFAKHGS 334
>gi|297812689|ref|XP_002874228.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320065|gb|EFH50487.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 566
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 183/331 (55%), Gaps = 33/331 (9%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG I +I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG
Sbjct: 80 NGKGI---TILWFRNDLRVLDNDALYKAWSSSDTLLPVYCLDPRLFHTTHFFNFPKTGAL 136
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R FL+E + DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +E+ E
Sbjct: 137 RGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGAHTVFAHKETCSEELHVE 196
Query: 237 EKIEAAMK--DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEA 293
+ +K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR +
Sbjct: 197 RLVNQGLKGVGNGTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRI 256
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF 353
L +PS D GD+P+L LG+ + GGE+ + R+ F
Sbjct: 257 PLSLGPIPSVDDW--GDVPTLEQLGIEPQEVTRGM---------RFVGGESAGVGRV--F 303
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
++ K KD + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 304 EYFWKKDLLKVYKD-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS- 361
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKK 444
+ W++FEL+WRD+FRF++ K
Sbjct: 362 -----------TYWVLFELIWRDYFRFLSIK 381
>gi|317419959|emb|CBN81995.1| Cryptochrome DASH [Dicentrarchus labrax]
Length = 521
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 183/329 (55%), Gaps = 30/329 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR DNE + A + ++P+YCFDPR Y G + KTGP+R FL+
Sbjct: 5 RTIICLLRNDLRFQDNELFHWAQRNAEYIVPLYCFDPRHYVGTYNYNLPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-DAVYAHREVSHDEVKSEEKIEA 241
+S+ DLR L ++GS+LVVR GKPE V+ +L K +G+ AV H EV+ +E+ E+ ++
Sbjct: 65 DSIRDLRNTLLSKGSNLVVRQGKPEEVVADLIKQLGSVSAVAFHEEVTSEELNVEKGVKD 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKG 299
++V WGSTLYH DDLPF + +P Y FR+ V+ +R +QLK
Sbjct: 125 VCAQMKVKVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVETQSRVRPVFPTPEQLKP 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LPS +E G IP+ DL ++ + +A GGE++ L RLK + + A
Sbjct: 185 LPS--GLEEGAIPTAEDLQQTEPLTDPR-------SAFPCSGGESQVLARLKHYFWDTDA 235
Query: 360 QPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G ++S K +PWLAMGC+SPR ++ ++K+ +A
Sbjct: 236 VATYKETRNG----LIGVDYSTKFAPWLAMGCISPRYIYHQIKQYEKERTA--------- 282
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W++FELLWRD+F+F+ KY +
Sbjct: 283 ---NQSTYWVIFELLWRDYFKFVGVKYGN 308
>gi|356507809|ref|XP_003522656.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Glycine max]
Length = 549
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 135/342 (39%), Positives = 188/342 (54%), Gaps = 45/342 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+L A S +VLPVYC DPR + + GF KTG RA FL+E
Sbjct: 56 TAIVWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLE 115
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DLRKNL RG +L+V+ GKPE +L LAK+ A VYA +E +E+ E + +
Sbjct: 116 CLADLRKNLMKRGLNLLVQHGKPEEILPSLAKSFQAHTVYAQKETCSEELNVERLVMRGL 175
Query: 244 KD--------EGIEV-------KYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEI 287
K GI V + WG+T+YHLDDLPF +P Y FR+ V+ I
Sbjct: 176 KQVVTSPEESSGITVSNNIPKLQLVWGTTMYHLDDLPFDATSLPDVYTQFRKLVETKCTI 235
Query: 288 RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEAL 347
R I+ L P+ D G +PSL LGLS + + GGET AL
Sbjct: 236 RSCIKLPASLGPPPTVQDW--GCLPSLEQLGLSSQSVNKGM---------KFVGGETAAL 284
Query: 348 QRL-KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
R+ + F + + K ++G + G ++S K SPWLA G LSPR +++E+K+
Sbjct: 285 SRVYEYFWKKDLLRVYKETRNG----MLGPDYSTKFSPWLASGSLSPRFIYEEVKRYE-- 338
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
ND + SS + W++FEL+WRD+FRF++ KY ++
Sbjct: 339 -------NDRLANSS---TYWVLFELIWRDYFRFLSVKYGNS 370
>gi|296081780|emb|CBI20785.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 191/350 (54%), Gaps = 49/350 (14%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG+ + +IVWFRNDLRV DNE+L A S +VLPVYC DPR +G + GF KTG
Sbjct: 85 NGSGV---AIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGAL 141
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FLIE ++DL++NL RG +L+++ GKPE +L LAK A VYAH+E +E+ E
Sbjct: 142 RAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVE 201
Query: 237 EKIEAAMKDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE 280
+ ++ + +++ WGST+YH++DLPF +P Y FR+
Sbjct: 202 RLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRK 261
Query: 281 KVKG-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM 339
V+ IR I L P+ D G +PS+ LGL + +V G +
Sbjct: 262 SVESKCTIRICIRTPTLLGPPPNIEDW--GSVPSIDQLGLHE----EKVSRGMR-----F 310
Query: 340 KGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 398
GGE AL R+ + F + + K ++G + GA++S K SPWLA G LSPR ++
Sbjct: 311 IGGEAAALSRVNEYFWKKDLLKVYKATRNG----MLGADYSTKFSPWLASGSLSPRFIYQ 366
Query: 399 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
E+K+ A ND + W++FEL+WRD+FRF++ KY ++
Sbjct: 367 EVKRYEKERQA----ND--------STYWVLFELIWRDYFRFLSVKYRNS 404
>gi|357123300|ref|XP_003563349.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Brachypodium distachyon]
Length = 587
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/350 (38%), Positives = 192/350 (54%), Gaps = 54/350 (15%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
++VWFRNDLRV DNE+L A + +VLPVYC DPR + + GF KTG RA FLI
Sbjct: 88 VAVVWFRNDLRVLDNEALVRAWAAAEAVLPVYCVDPRIFAGVTHRFGFPKTGALRAQFLI 147
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NLQ RG +L+VR GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 148 ECLEDLKQNLQKRGLNLLVRHGKPEDILPAIAKAVRAHTVYAHQETCSEEILVERLVHRG 207
Query: 243 MKDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE 286
++ I +++ WG+T+YH+DDL F + +P Y FR K VE
Sbjct: 208 LEQVVIPQGPGGASNQNKPLNPKLQLIWGTTMYHVDDLLFPVSNLPDVYTQFR---KAVE 264
Query: 287 IRKTIEALDQLKGL----PSRGDVEP---GDIPSLLDLGLSQSAAMSQVWHGGKPAANSM 339
+ +++ +L L PS G E G IP+L LGLS + A +
Sbjct: 265 SKSSVQNCCKLPPLLGPAPSSGLDELGGWGSIPTLESLGLSVTKAEKGM---------HF 315
Query: 340 KGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 398
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LSPR + +
Sbjct: 316 LGGESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLSPRYICE 371
Query: 399 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
E+K+ A ND + W++FEL+WRD+FRF++ KY S+
Sbjct: 372 EVKRYEKQRVA----ND--------STYWVLFELIWRDYFRFLSVKYGSS 409
>gi|348503387|ref|XP_003439246.1| PREDICTED: cryptochrome DASH-like [Oreochromis niloticus]
Length = 521
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 183/329 (55%), Gaps = 30/329 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE + A + ++P+YCFDP Y G + KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLHDNELFHWAQRNAEHIVPLYCFDPTHYVGTYNYSLPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-DAVYAHREVSHDEVKSEEKIEA 241
E + DLR L +GS+LVVR GKPE V+ +L + +G+ +V H EV+ +E+ E++++
Sbjct: 65 EGIRDLRNTLINKGSNLVVRRGKPEEVVADLIRQLGSVSSVAFHEEVTSEELNVEKRVKD 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
++V WGSTLYH DDLPF + +P Y FR+ V+ +R ++L
Sbjct: 125 VCAQMKVKVHTCWGSTLYHRDDLPFPHMSRLPDVYTQFRKAVESEGRVRPVFSTPEKLNP 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LP +E G IP+ DL ++ + +A GGE++AL RLK + + A
Sbjct: 185 LPP--GLEEGAIPTAEDLQQTEPVTDPR-------SAFPCGGGESQALARLKHYFWDTDA 235
Query: 360 QPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G ++S K SPWLAMGC+SPR ++ ++K+ +A
Sbjct: 236 VATYKETRNG----LIGVDYSTKFSPWLAMGCISPRYIYHQIKQYEKERTA--------- 282
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W++FELLWRD+FRF++ KY +
Sbjct: 283 ---NQSTYWVIFELLWRDYFRFVSVKYGN 308
>gi|379729344|ref|YP_005321540.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
gi|378574955|gb|AFC23956.1| deoxyribodipyrimidine photolyase [Saprospira grandis str. Lewin]
Length = 466
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 171/330 (51%), Gaps = 40/330 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYG-KSSSGFDKTGPYRASFLIESV 185
I WFR DLR+HDNE L A V PVY FD R +G K+ SGF KTGP R F+IE+V
Sbjct: 14 IAWFRLDLRLHDNEMLTEAIKAGEEVYPVYVFDERTFGGKTESGFAKTGPRRCQFIIEAV 73
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DL++ LQA G DL++R GK E + +LA+ + V+ +RE +++E + ++E +
Sbjct: 74 ADLKQQLQALGIDLLIRRGKAEEEVFKLAQELKTGWVFCNREKTYEEELQQNRLEEKLWS 133
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG-LPSRG 304
G E+++F G LY+ DLPF + P + F RK +E L ++ LP
Sbjct: 134 IGQEIRFFRGKMLYYTQDLPFPIAHTPDIFTQF---------RKEVEKLTPVRAPLPKPK 184
Query: 305 DVEP-------GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
P GD+P L D G + KGGETE L+RL + E
Sbjct: 185 AFNPWSHRLPLGDLPQLSDFGWEMPPQDDRT-------VLQFKGGETEGLKRLHYYLWES 237
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
+ + + GA++S K SPWLA GCLSP+ ++DE+K+ +
Sbjct: 238 DC---IASYKETRNGLLGADYSSKFSPWLAQGCLSPKQIYDEIKRYE------------K 282
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ + WL FELLWRDFFR + KKY S
Sbjct: 283 ERTKNKSTYWLYFELLWRDFFRLMGKKYGS 312
>gi|225429814|ref|XP_002280771.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Vitis vinifera]
Length = 549
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 191/350 (54%), Gaps = 49/350 (14%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG+ + +IVWFRNDLRV DNE+L A S +VLPVYC DPR +G + GF KTG
Sbjct: 48 NGSGV---AIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGAL 104
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FLIE ++DL++NL RG +L+++ GKPE +L LAK A VYAH+E +E+ E
Sbjct: 105 RAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVE 164
Query: 237 EKIEAAMKDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE 280
+ ++ + +++ WGST+YH++DLPF +P Y FR+
Sbjct: 165 RLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFRK 224
Query: 281 KVKG-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM 339
V+ IR I L P+ D G +PS+ LGL + +V G +
Sbjct: 225 SVESKCTIRICIRTPTLLGPPPNIEDW--GSVPSIDQLGLHE----EKVSRGMR-----F 273
Query: 340 KGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 398
GGE AL R+ + F + + K ++G + GA++S K SPWLA G LSPR ++
Sbjct: 274 IGGEAAALSRVNEYFWKKDLLKVYKATRNG----MLGADYSTKFSPWLASGSLSPRFIYQ 329
Query: 399 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
E+K+ A ND + W++FEL+WRD+FRF++ KY ++
Sbjct: 330 EVKRYEKERQA----ND--------STYWVLFELIWRDYFRFLSVKYRNS 367
>gi|242096612|ref|XP_002438796.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
gi|241917019|gb|EER90163.1| hypothetical protein SORBIDRAFT_10g026420 [Sorghum bicolor]
Length = 577
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 188/344 (54%), Gaps = 46/344 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
++VWFRNDLRV DNE+L A + S +VLPVYC DPR + S+ GF KTG RA FLI
Sbjct: 79 VAVVWFRNDLRVLDNEALLRAWSASEAVLPVYCVDPRVFAGSTHYFGFPKTGALRAQFLI 138
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++ L+ +G DL+VR GKPE +L +AKA+ A +YAH+E +E+ E +
Sbjct: 139 ECLGDLKQILRKKGLDLLVRHGKPEEILPSIAKAVSAHTIYAHKETCSEELLVERLVSKG 198
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEI 287
++ I ++ WG+T+YH+DDLPF + +P Y FR+ V+ +
Sbjct: 199 LEQVQIAQGGASVPKKPLNPRLQLIWGATMYHIDDLPFPVSNLPDVYTQFRKAVESKSSV 258
Query: 288 RKTIEALDQLKGLPSRGDVEPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGET 344
R + L LPS E G IP+L LGLS + + + GGE
Sbjct: 259 RNCTKLPPSLGPLPSSSIDEIGGWGAIPTLESLGLSVTKSEKGM---------HFIGGEN 309
Query: 345 EALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKT 403
AL R+ + F + Q + K ++G + G ++S K SPWLA G LSPR + +E+K+
Sbjct: 310 AALGRVHEYFWKKDQLKDYKVTRNG----MLGPDYSTKFSPWLASGSLSPRYICEEVKRY 365
Query: 404 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
A ND + W++FEL+WRD+FRF++ KY +
Sbjct: 366 EKQRVA----ND--------STYWVLFELIWRDYFRFLSAKYGN 397
>gi|410909117|ref|XP_003968037.1| PREDICTED: cryptochrome DASH-like [Takifugu rubripes]
Length = 521
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 180/329 (54%), Gaps = 30/329 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+ DNE + A + ++P+YCFDPR Y G KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLFDNELFHWAQRNADHIVPLYCFDPRHYMGTYHYNLPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEA 241
ES+ DLR L +GS+L+VR GKPE V+ L K +G+ + A H EV+ +E+ E++++
Sbjct: 65 ESIKDLRNTLLNKGSNLIVRRGKPEEVVASLIKQLGSVSTVAFHEEVTSEELDVEKRVKD 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKG 299
+ V WGSTLYH DDLPF + +P Y FR+ V+ +R + LK
Sbjct: 125 VCAQMKVNVHTCWGSTLYHRDDLPFHHISRLPDVYTQFRKAVESQCRVRPVFPPPEHLKP 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LP +E G I + DL + A + +A GGE++AL RLK + + A
Sbjct: 185 LPQ--GLEEGTILTAEDLEQKEPVADPR-------SAFPCSGGESQALARLKHYFWDTDA 235
Query: 360 QPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G ++S K SPWLA+GC+SPR ++ ++K+ + +A
Sbjct: 236 VAVYKETRNG----LIGVDYSTKFSPWLALGCISPRYIYHQIKQYESERTA--------- 282
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W++FELLWRD+FRF+ KY +
Sbjct: 283 ---NQSTYWVIFELLWRDYFRFVAVKYGT 308
>gi|238828068|pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex
Length = 525
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 179/324 (55%), Gaps = 30/324 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG R FL+E
Sbjct: 42 VTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 101
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +EV E + +
Sbjct: 102 CLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGL 161
Query: 244 KDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR + L
Sbjct: 162 KRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPT 221
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
PS D GD+P+L LG+ + GGE+ + R+ F ++
Sbjct: 222 PSVDDW--GDVPTLEKLGVEPQEVTRGM---------RFVGGESAGVGRV--FEYFWKKD 268
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K K+ + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 269 LLKVYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS-------- 319
Query: 421 SGAGSNWLMFELLWRDFFRFITKK 444
+ W++FEL+WRD+FRF++ K
Sbjct: 320 ----TYWVLFELIWRDYFRFLSIK 339
>gi|150261312|pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana
gi|150261313|pdb|2J4D|B Chain B, Cryptochrome 3 From Arabidopsis Thaliana
gi|28971609|dbj|BAC65244.1| cryptochrome dash [Arabidopsis thaliana]
Length = 525
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 179/324 (55%), Gaps = 30/324 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG R FL+E
Sbjct: 41 VTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 100
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +EV E + +
Sbjct: 101 CLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGL 160
Query: 244 KDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR + L
Sbjct: 161 KRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPT 220
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
PS D GD+P+L LG+ + GGE+ + R+ F ++
Sbjct: 221 PSVDDW--GDVPTLEKLGVEPQEVTRGM---------RFVGGESAGVGRV--FEYFWKKD 267
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K K+ + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 268 LLKVYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS-------- 318
Query: 421 SGAGSNWLMFELLWRDFFRFITKK 444
+ W++FEL+WRD+FRF++ K
Sbjct: 319 ----TYWVLFELIWRDYFRFLSIK 338
>gi|97047673|sp|Q84KJ5.2|CRYD_ARATH RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
Length = 569
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 179/324 (55%), Gaps = 30/324 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG R FL+E
Sbjct: 85 VTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 144
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +EV E + +
Sbjct: 145 CLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGL 204
Query: 244 KDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR + L
Sbjct: 205 KRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPT 264
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
PS D GD+P+L LG+ + GGE+ + R+ F ++
Sbjct: 265 PSVDDW--GDVPTLEKLGVEPQEVTRGM---------RFVGGESAGVGRV--FEYFWKKD 311
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K K+ + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 312 LLKVYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS-------- 362
Query: 421 SGAGSNWLMFELLWRDFFRFITKK 444
+ W++FEL+WRD+FRF++ K
Sbjct: 363 ----TYWVLFELIWRDYFRFLSIK 382
>gi|22327046|ref|NP_568461.2| cryptochrome DASH [Arabidopsis thaliana]
gi|119390180|pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis
Thaliana
gi|238828067|pdb|2VTB|A Chain A, Structure Of Cryptochrome 3 - Dna Complex
gi|238828069|pdb|2VTB|C Chain C, Structure Of Cryptochrome 3 - Dna Complex
gi|238828070|pdb|2VTB|D Chain D, Structure Of Cryptochrome 3 - Dna Complex
gi|238828071|pdb|2VTB|E Chain E, Structure Of Cryptochrome 3 - Dna Complex
gi|238828072|pdb|2VTB|F Chain F, Structure Of Cryptochrome 3 - Dna Complex
gi|18086429|gb|AAL57669.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|20857182|gb|AAM26705.1| AT5g24850/F6A4_60 [Arabidopsis thaliana]
gi|332005986|gb|AED93369.1| cryptochrome DASH [Arabidopsis thaliana]
Length = 526
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 179/324 (55%), Gaps = 30/324 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG R FL+E
Sbjct: 42 VTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 101
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +EV E + +
Sbjct: 102 CLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGL 161
Query: 244 KDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR + L
Sbjct: 162 KRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPT 221
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
PS D GD+P+L LG+ + GGE+ + R+ F ++
Sbjct: 222 PSVDDW--GDVPTLEKLGVEPQEVTRGM---------RFVGGESAGVGRV--FEYFWKKD 268
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K K+ + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 269 LLKVYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS-------- 319
Query: 421 SGAGSNWLMFELLWRDFFRFITKK 444
+ W++FEL+WRD+FRF++ K
Sbjct: 320 ----TYWVLFELIWRDYFRFLSIK 339
>gi|440712553|ref|ZP_20893169.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
gi|436442708|gb|ELP35819.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SWK14]
Length = 488
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 181/326 (55%), Gaps = 29/326 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIES+
Sbjct: 4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPGTEEADTAESVQQLCDQ 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
+GI +G TL H D+LPF++ + P + FR+++ K E R +E +++G LP
Sbjct: 123 QGIATHVAYGDTLIHPDELPFEISDTPELFTDFRKEIEKQCEARSPLEEPIRIQGALPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-AEYQAQPP 362
+V GDIP+L LGLS + N GG+ A QR++++ E + +
Sbjct: 182 -EVNAGDIPTLESLGLSTPPLDDR-------CLNQFTGGQNAAQQRMEEYIWNEDRLRVY 233
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++G + N S K SPWLA GCLSPR + D +++ E
Sbjct: 234 KETRNG----MLHQNDSSKFSPWLAQGCLSPRMIADHVRRYE------------EERVEN 277
Query: 423 AGSNWLMFELLWRDFFRFITKKYSSA 448
+ W++FELLWRD+FR+I++K+ +
Sbjct: 278 KSTYWMIFELLWRDYFRWISRKHGAT 303
>gi|390338240|ref|XP_783613.3| PREDICTED: cryptochrome DASH-like [Strongylocentrotus purpuratus]
Length = 417
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 173/331 (52%), Gaps = 29/331 (8%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRA 178
A + I RNDLR DNE L A+ + +V+P+YCFDPR Y G GF KTGP+R
Sbjct: 2 AGRMKIVICLLRNDLRYRDNEVLFWAHKNATNVIPLYCFDPRHYKGTHQFGFPKTGPHRL 61
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG---ADAVYAHREVSHDEVKS 235
FL+ESV DLR LQ+ GS LVVR G PE V+ +L + G AV E + +E+
Sbjct: 62 KFLLESVRDLRTTLQSVGSGLVVRSGNPEDVVPQLIQQFGEGEVAAVALQEEATREELDV 121
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEAL 294
E + + G++VK FWGSTLYH +D+PF +P Y FR+KV+ +R I
Sbjct: 122 EAGLHQSCSKLGVQVKKFWGSTLYHREDVPFSPQGVPNVYTEFRKKVENRSHVRPPINMP 181
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
LKGLP VE GDIP GL + S+ A +GGET L R++ +
Sbjct: 182 KPLKGLPQ--GVEEGDIPVFSSFGLKDPGSDSR-------TAFPFQGGETTGLARIEDY- 231
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ + + G+ +S K + WLA GC+SPR + E+K+
Sbjct: 232 --FWKSDCIAKYKETRNGLIGSEYSTKFAAWLAHGCVSPRQIHAEVKRYE---------- 279
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ + + W++FEL+WRD+F+F+ K+
Sbjct: 280 --KERTENQSTYWVIFELIWRDYFKFVALKF 308
>gi|75322263|sp|Q651U1.1|CRYD_ORYSJ RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
Flags: Precursor
gi|52075904|dbj|BAD45850.1| putative cryptochrome dash [Oryza sativa Japonica Group]
gi|52077386|dbj|BAD46426.1| putative cryptochrome dash [Oryza sativa Japonica Group]
Length = 582
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 189/356 (53%), Gaps = 68/356 (19%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
+IVWFRNDLRV DNE++ A S +VLPVYC DPR S+ GF KTG RA FLI
Sbjct: 85 VAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 144
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NL +G DL++R GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 145 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKG 204
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I +++ WG+TLYH+DDLPF + +P Y FR K VE +
Sbjct: 205 LEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESK 261
Query: 289 KTIE---------------ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGK 333
++ LD++ G G +P+L LGLS + A +
Sbjct: 262 SSVRNCSKLPPSLGPPPGSGLDEIGGW--------GTVPTLESLGLSMTKAEKGM----- 308
Query: 334 PAANSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 392
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LS
Sbjct: 309 ----HFVGGESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLS 360
Query: 393 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
PR + +E+K+ A ND + W++FEL+WRD+FRFI+ KY ++
Sbjct: 361 PRYICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFRFISAKYGNS 404
>gi|110825715|sp|Q38JU2.2|CRYD_SOLLC RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
AltName: Full=Cryptochrome-3; Flags: Precursor
gi|98467788|gb|ABB01166.2| cryptochrome 3 [Solanum lycopersicum]
Length = 577
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 185/338 (54%), Gaps = 44/338 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+L A S ++LPVYC DPR +G + G KTG RA F+IE
Sbjct: 79 VAIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIE 138
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL++NL RG DL+++ GKPE ++ LAKA A VYAH+E +EVK E+ + +
Sbjct: 139 CLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNL 198
Query: 244 K------------DEG----IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVE 286
+ D G +++ WGST+YH+DDLPF +P Y FR+ V+ +
Sbjct: 199 QKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSK 258
Query: 287 IRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEA 346
+R + P GD G +P + +LGL Q + + GGE+ A
Sbjct: 259 VRNCTKLPTSFGPPPEVGDW--GHVPQVSELGLQQEKVSKGM---------NFVGGESAA 307
Query: 347 LQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
L R+ + ++ K K+ + + GA++S K SPWLA G LSPR +++E+K+
Sbjct: 308 LGRVHDYF--WKKDLLKVYKE-TRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYE-- 362
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKK 444
+ S + W++FEL+WRD+FRF++ K
Sbjct: 363 ----------KERLSNDSTYWVLFELIWRDYFRFLSIK 390
>gi|32477278|ref|NP_870272.1| DNA photolyase [Rhodopirellula baltica SH 1]
gi|32447829|emb|CAD77347.1| DNA photolyase [Rhodopirellula baltica SH 1]
Length = 526
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 179/326 (54%), Gaps = 29/326 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIE++
Sbjct: 42 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENL 100
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 101 TDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCDQ 160
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
GI +G TL H D+LPF++ + P + FR+++ K E R +E ++ G LP
Sbjct: 161 HGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIRIHGTLPE- 219
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-AEYQAQPP 362
+V GDIP+L LGLS + N GG+ A QR++++ E + +
Sbjct: 220 -EVNAGDIPTLESLGLSTPPLDDR-------CLNQFTGGQNAAQQRMEEYIWNEDRLRVY 271
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++G + N S K SPWLA GCLSPR + D +++ E
Sbjct: 272 KETRNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRRYE------------EERVKN 315
Query: 423 AGSNWLMFELLWRDFFRFITKKYSSA 448
+ W++FELLWRD+FR+I++K+ +
Sbjct: 316 KSTYWMIFELLWRDYFRWISRKHGAT 341
>gi|218198696|gb|EEC81123.1| hypothetical protein OsI_24002 [Oryza sativa Indica Group]
Length = 547
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 189/356 (53%), Gaps = 68/356 (19%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
+IVWFRNDLRV DNE++ A S +VLPVYC DPR S+ GF KTG RA FLI
Sbjct: 50 VAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 109
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NL +G DL++R GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 110 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHQETCSEELLVEHLVRKG 169
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I +++ WG+TLYH+DDLPF + +P Y FR K VE +
Sbjct: 170 LEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESK 226
Query: 289 KTIE---------------ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGK 333
++ LD++ G G +P+L LGLS + A +
Sbjct: 227 SSVRNCSKLPPSLGPPPGSGLDEIGGW--------GTVPTLESLGLSMTKAEKGM----- 273
Query: 334 PAANSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 392
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LS
Sbjct: 274 ----HFVGGESAALGRVHEYFWKKDQLKVYKKTRNG----MLGPDYSTKFSPWLASGSLS 325
Query: 393 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
PR + +E+K+ A ND + W++FEL+WRD+FRFI+ KY ++
Sbjct: 326 PRYICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFRFISAKYGNS 369
>gi|115469358|ref|NP_001058278.1| Os06g0661800 [Oryza sativa Japonica Group]
gi|113596318|dbj|BAF20192.1| Os06g0661800 [Oryza sativa Japonica Group]
Length = 547
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 189/356 (53%), Gaps = 68/356 (19%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
+IVWFRNDLRV DNE++ A S +VLPVYC DPR S+ GF KTG RA FLI
Sbjct: 50 VAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 109
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NL +G DL++R GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 110 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKG 169
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I +++ WG+TLYH+DDLPF + +P Y FR K VE +
Sbjct: 170 LEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESK 226
Query: 289 KTIE---------------ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGK 333
++ LD++ G G +P+L LGLS + A +
Sbjct: 227 SSVRNCSKLPPSLGPPPGSGLDEIGGW--------GTVPTLESLGLSMTKAEKGM----- 273
Query: 334 PAANSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 392
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LS
Sbjct: 274 ----HFVGGESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLS 325
Query: 393 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
PR + +E+K+ A ND + W++FEL+WRD+FRFI+ KY ++
Sbjct: 326 PRYICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFRFISAKYGNS 369
>gi|97047983|sp|Q7UJB1.2|CRYD_RHOBA RecName: Full=Cryptochrome DASH
Length = 488
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 179/326 (54%), Gaps = 29/326 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIE++
Sbjct: 4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCDQ 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
GI +G TL H D+LPF++ + P + FR+++ K E R +E ++ G LP
Sbjct: 123 HGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIRIHGTLPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-AEYQAQPP 362
+V GDIP+L LGLS + N GG+ A QR++++ E + +
Sbjct: 182 -EVNAGDIPTLESLGLSTPPLDDR-------CLNQFTGGQNAAQQRMEEYIWNEDRLRVY 233
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++G + N S K SPWLA GCLSPR + D +++ E
Sbjct: 234 KETRNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRRYE------------EERVKN 277
Query: 423 AGSNWLMFELLWRDFFRFITKKYSSA 448
+ W++FELLWRD+FR+I++K+ +
Sbjct: 278 KSTYWMIFELLWRDYFRWISRKHGAT 303
>gi|449669082|ref|XP_002166544.2| PREDICTED: cryptochrome DASH-like [Hydra magnipapillata]
Length = 526
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 187/335 (55%), Gaps = 25/335 (7%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYR 177
G + R+ I W RNDLR+HDNE LN A + VLP+YCFDP Y + GF KTG +R
Sbjct: 3 GFSSRKTIIYWIRNDLRLHDNECLNFACRDGSHVLPLYCFDPDHYKLTHHFGFLKTGIHR 62
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKP----ETVLVELAKAIGADAVYAHREVSHDEV 233
A ++++VS LR +LQ +GS+LV+ +P E +++E + ++ +E++ +E
Sbjct: 63 AKLILDAVSGLRNSLQKKGSNLVISKHRPKEAIEKLILECEQTAPVTSIVFQKEITKEET 122
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
E + +GI+V FWGSTLYH++D+PF++ ++P Y FR+ V+ +RK
Sbjct: 123 DVEASVFKVCDSKGIQVLSFWGSTLYHIEDIPFQINQIPNTYTLFRKGVEKCPVRKLNPI 182
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF 353
D++ LP+ + G++P L +LG ++ V + G E +A++RL ++
Sbjct: 183 PDKISSLPNLKNFPLGEVPLLNELGFDKNEYEIDV-----RSVFPFNGSEVDAVKRLNEY 237
Query: 354 AAEYQA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
A K ++G + G ++S K SPWLA+G LSPR ++ ++K K
Sbjct: 238 LWGNSAILTYKETRNG----LLGKDYSTKFSPWLALGSLSPRMIYHKIK----DFEEQKK 289
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ +S + W++FEL+WRD+F+FI K+ +
Sbjct: 290 IKENDS------TYWVVFELIWRDYFKFICSKHGN 318
>gi|413955020|gb|AFW87669.1| hypothetical protein ZEAMMB73_818499 [Zea mays]
Length = 578
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 186/345 (53%), Gaps = 46/345 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
++VWFRNDLRV DNE+L A S +VLPVYC DPR + S+ GF K G RA FLI
Sbjct: 80 VAVVWFRNDLRVIDNEALLRAWAASEAVLPVYCVDPRVFAGSTHYFGFPKKGALRAQFLI 139
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL+++L+ +G DL+VR GKPE +L +AKA+ A +YAH+E +E+ E +
Sbjct: 140 ECLGDLKQSLRKKGLDLLVRHGKPEEILPSIAKAVSAHTIYAHKETCSEELLVERLVSKG 199
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I ++ WG+T+YH+DDLPF + +P Y FR+ V+
Sbjct: 200 LEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYTQFRKAVESKCSV 259
Query: 289 KTIEALDQLKGLPSRGDVEP----GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGET 344
+ L G P ++ G +P+L LG S + + + GGE+
Sbjct: 260 RNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLGPSVTKSEKGM---------HFIGGES 310
Query: 345 EALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKT 403
AL R+ + F + Q + K ++G + G ++S K SPWLA G LSPR + +E+K+
Sbjct: 311 AALGRVHEYFWKKDQLKDYKVTRNG----MLGPDYSTKFSPWLASGSLSPRYICEEVKRY 366
Query: 404 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
A ND + W++FEL+WRD+FRF++ KY +A
Sbjct: 367 EKQRVA----ND--------STYWVLFELIWRDYFRFLSAKYGNA 399
>gi|226508658|ref|NP_001146707.1| uncharacterized protein LOC100280309 [Zea mays]
gi|219888435|gb|ACL54592.1| unknown [Zea mays]
Length = 550
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 186/345 (53%), Gaps = 46/345 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
++VWFRNDLRV DNE+L A S +VLPVYC DPR + S+ GF K G RA FLI
Sbjct: 52 VAVVWFRNDLRVIDNEALLRAWAASEAVLPVYCVDPRVFAGSTHYFGFPKKGALRAQFLI 111
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL+++L+ +G DL+VR GKPE +L +AKA+ A +YAH+E +E+ E +
Sbjct: 112 ECLGDLKQSLRKKGLDLLVRHGKPEEILPSIAKAVSAHTIYAHKETCSEELLVERLVSKG 171
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I ++ WG+T+YH+DDLPF + +P Y FR+ V+
Sbjct: 172 LEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFPVSSLPDVYTQFRKAVESKCSV 231
Query: 289 KTIEALDQLKGLPSRGDVEP----GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGET 344
+ L G P ++ G +P+L LG S + + + GGE+
Sbjct: 232 RNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLGPSVTKSEKGM---------HFIGGES 282
Query: 345 EALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKT 403
AL R+ + F + Q + K ++G + G ++S K SPWLA G LSPR + +E+K+
Sbjct: 283 AALGRVHEYFWKKDQLKDYKVTRNG----MLGPDYSTKFSPWLASGSLSPRYICEEVKRY 338
Query: 404 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
A ND + W++FEL+WRD+FRF++ KY +A
Sbjct: 339 EKQRVA----ND--------STYWVLFELIWRDYFRFLSAKYGNA 371
>gi|421610747|ref|ZP_16051913.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
gi|408498531|gb|EKK03024.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica SH28]
Length = 488
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 180/326 (55%), Gaps = 29/326 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIES+
Sbjct: 4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VR G+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRAGRPETVLQHLLPSLAVDAVHFHHEPGTEEADTAESVQQLCDQ 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
+GI +G TL H D+LPF++ + P + FR+++ K E R +E +++G LP
Sbjct: 123 QGIATHVAYGDTLIHPDELPFEISDTPELFTDFRKEIEKQCEARSPLEEPIRIQGALPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-AEYQAQPP 362
+V GDIP+L LGLS + N GG+ A QR++++ E + +
Sbjct: 182 -EVNAGDIPTLESLGLSTPPLDDR-------CLNRFTGGQNAAQQRMEEYIWNEDRLRVY 233
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++G + N S K SPWLA GCLSPR + D +++ +
Sbjct: 234 KETRNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRRYE------------KERVEN 277
Query: 423 AGSNWLMFELLWRDFFRFITKKYSSA 448
+ W++FELLWRD+FR+I++K+ +
Sbjct: 278 KSTYWMIFELLWRDYFRWISRKHGAT 303
>gi|224121408|ref|XP_002330820.1| predicted protein [Populus trichocarpa]
gi|222872622|gb|EEF09753.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/358 (37%), Positives = 184/358 (51%), Gaps = 55/358 (15%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
A+IVWFRNDLRV DNE L A S SVLPVYC DPR + S+ GF KTG R F++
Sbjct: 36 AAIVWFRNDLRVLDNEVLFKAWVNSESVLPVYCVDPRLFQASTCYFGFPKTGGLRGQFIV 95
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL+KNL RG +L++R GKPE ++ LAK + VYA +E +EV E+ + A
Sbjct: 96 ECLVDLKKNLMKRGLNLLIRHGKPEEIIPALAKDFASHTVYAQKETCSEEVNVEKLVSKA 155
Query: 243 MKDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE 286
++ + ++ WG T+YHLDDLPF +P Y FR K VE
Sbjct: 156 LRRVHLPHSTGRSTSQGSANSPTLQLVWGGTMYHLDDLPFSTNSIPDVYTQFR---KSVE 212
Query: 287 IRKTIEALDQLK-GLPSRGDVEP-GDIPSLLDLGLS-QSAAMSQVWHGGKPAANSMKGGE 343
R +I + ++ L VE G +PS+ LGL Q A H K GGE
Sbjct: 213 ARCSIRSCAKISMSLGPAPRVEDWGCVPSIEQLGLQPQEAGFMFYLHVSK--GMRFLGGE 270
Query: 344 TEALQRLKKFAAEYQAQPPKGN-------------KDGNHDSIYGANFSCKISPWLAMGC 390
T AL R+ EY + GN + + G ++S K SPWLA G
Sbjct: 271 TAALSRV----YEYFWKKASGNCFLLSLCLDFLKIYKETRNGMLGPDYSTKFSPWLASGS 326
Query: 391 LSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
LSPR +++E+K+ A ND + W++FEL+WRD+FRFI+ KY ++
Sbjct: 327 LSPRFIYEEVKRYEKGRLA----ND--------STYWVLFELIWRDYFRFISFKYGNS 372
>gi|222636034|gb|EEE66166.1| hypothetical protein OsJ_22248 [Oryza sativa Japonica Group]
Length = 547
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/356 (36%), Positives = 188/356 (52%), Gaps = 68/356 (19%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
+IVWFRNDLRV DNE++ A S +V PVYC DPR S+ GF KTG RA FLI
Sbjct: 50 VAIVWFRNDLRVLDNEAVVRAWAASDAVFPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 109
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NL +G DL++R GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 110 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKG 169
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I +++ WG+TLYH+DDLPF + +P Y FR K VE +
Sbjct: 170 LEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESK 226
Query: 289 KTIE---------------ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGK 333
++ LD++ G G +P+L LGLS + A +
Sbjct: 227 SSVRNCSKLPPSLGPPPGSGLDEIGGW--------GTVPTLESLGLSMTKAEKGM----- 273
Query: 334 PAANSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 392
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LS
Sbjct: 274 ----HFVGGESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLS 325
Query: 393 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
PR + +E+K+ A ND + W++FEL+WRD+FRFI+ KY ++
Sbjct: 326 PRYICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFRFISAKYGNS 369
>gi|417302466|ref|ZP_12089566.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
gi|327541206|gb|EGF27750.1| deoxyribodipyrimidine photolyase [Rhodopirellula baltica WH47]
Length = 488
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 117/323 (36%), Positives = 178/323 (55%), Gaps = 29/323 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VW+RNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIES+
Sbjct: 4 ALVWYRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPGTEEADTAESVQQLCDQ 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
GI +G TL H D+LPF++ + P + FR+++ K E R +E +++G LP
Sbjct: 123 HGIATHVAYGDTLIHPDELPFEIADTPGLFTDFRKEIEKQCEARSPLEEPIRIQGALPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-AEYQAQPP 362
+V GDIP+L LGLS + N GG+ A QR++++ E + +
Sbjct: 182 -EVNAGDIPTLESLGLSTPPLDDR-------CLNQFTGGQNAAQQRMEEYIWNEDRLRVY 233
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++G + N S K SPWLA GCLSPR + D ++ E
Sbjct: 234 KETRNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRCYE------------EERVEN 277
Query: 423 AGSNWLMFELLWRDFFRFITKKY 445
+ W++FELLWRD+FR+I++K+
Sbjct: 278 KSTYWMIFELLWRDYFRWISRKH 300
>gi|167521638|ref|XP_001745157.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776115|gb|EDQ89735.1| predicted protein [Monosiga brevicollis MX1]
Length = 525
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 184/337 (54%), Gaps = 39/337 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYG-------KSSSGFDKTGP 175
R +VWFRNDLRVHDNE L A S + V+PVYCFD R Y + F K G
Sbjct: 8 RPVVVWFRNDLRVHDNEVLLQAAKASHNHVVPVYCFDIRQYSLVITHRSRRCGQFPKCGR 67
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
RA FLIESV DLR LQ GS LVVR G PE + +A +GA V+AH+EV +EV +
Sbjct: 68 PRARFLIESVDDLRTRLQELGSGLVVRTGLPEEEVARVAAQVGATQVFAHQEVCSEEVAA 127
Query: 236 EEKIEAAMKDEGIEVKYFWGS-TLYHLDDLPF--KLGEMPTNYGGFREKVKG-VEIRKTI 291
E +++ ++ + + WG+ TL HLDDL F + +P+ + FR++V+ + +R +
Sbjct: 128 EHRLKRQLE---VPLSLHWGAVTLCHLDDLDFGPRCKHLPSVFTQFRKRVEADMHVRPVV 184
Query: 292 EALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
A +L LPS D+E G IP++ DL Q + A KGGET A RL+
Sbjct: 185 AAPARLAPLPS--DLELGSIPTVEDLCPGQHEPDER-------AVLPFKGGETAARARLQ 235
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ +++ KD + + G ++S K SPWLA G L+ R ++ E+K+
Sbjct: 236 YYL--WESNLLASYKD-TRNGLVGGDYSSKFSPWLAHGNLTARWIYHEVKRYE------- 285
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ + + WL+FELLWRD+FRF+ ++ +A
Sbjct: 286 -----QERTENTSTYWLIFELLWRDYFRFVALQHGTA 317
>gi|381186840|ref|ZP_09894408.1| cryptochrome [Flavobacterium frigoris PS1]
gi|379651146|gb|EIA09713.1| cryptochrome [Flavobacterium frigoris PS1]
Length = 429
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 190/327 (58%), Gaps = 31/327 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +IVWF+ DLR++DNE+L A +S +LP+YCFD + + GF KTG YRA FL+E
Sbjct: 2 KTAIVWFKTDLRLYDNETLIKAIAQSEEILPIYCFDDSHFETTQYGFKKTGSYRAQFLLE 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ +L NL+ GS L++ GKPE + ++ V+A REV+ +E ++E+ ++ +
Sbjct: 62 SLKNLDANLRKLGSGLLIVKGKPEVEIPKIVAEYKVHKVFAEREVAFEEKRTEKLVQTEL 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
E++ F STLYH +DLPF ++P + FR+K+ + +R + L
Sbjct: 122 FKLRCELETFSTSTLYHAEDLPFAKKDIPDIFTVFRKKIEQETSVRSVFSS-----PLTI 176
Query: 303 RGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-Q 360
+ P ++P+L LGL S S+ AA + KGGET+A +RL + E ++
Sbjct: 177 ASPIIPKLNLPTLKKLGLELSKIDSR-------AAINFKGGETQAKKRLNHYFFETKSLS 229
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + G ++S K S WLA+GC+SPR+++ E+K+ + ++G+
Sbjct: 230 SYKETRNG----MVGEDYSSKFSAWLALGCISPRAIYFEIKRY-----------ENQNGA 274
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSS 447
+ + + WL+FELLWRDFFRF+ KK+ +
Sbjct: 275 NDS-TYWLVFELLWRDFFRFMFKKHQT 300
>gi|195657177|gb|ACG48056.1| hypothetical protein [Zea mays]
Length = 207
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 125/179 (69%), Gaps = 6/179 (3%)
Query: 288 RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS-MKGGETEA 346
+K +EA +++K +P + +EPGDIP+L +LGL+ AMSQ KPA S + GGETEA
Sbjct: 32 KKVLEAPEEVKCVPMKNVLEPGDIPTLAELGLTAPPAMSQ---DSKPAVGSTLIGGETEA 88
Query: 347 LQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
L+RLKKFAAE QP K +K DSIYGANFSCKISPWLA GCLSPR M++ELKK AT
Sbjct: 89 LERLKKFAAECSMQPNKVDKSNTQDSIYGANFSCKISPWLATGCLSPRFMYEELKKHATK 148
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
G+S AG+NWLMFELLWRDFFRFITKKYSS +K E AT CT A A
Sbjct: 149 AIPFGSTPKNNDGTSDAGTNWLMFELLWRDFFRFITKKYSSVQKTSEV--ATGCTPAPA 205
>gi|384248698|gb|EIE22181.1| cryptochrome [Coccomyxa subellipsoidea C-169]
Length = 566
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 190/340 (55%), Gaps = 27/340 (7%)
Query: 127 IVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++WFRNDLR+ DN ++ A ++ V+P+YCFDPR Y + G KTG + ASFL
Sbjct: 7 VLWFRNDLRLTDNAIVHQAAQLIQKKQASEVVPLYCFDPRQYIATPWGNPKTGAHHASFL 66
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++SV DL++ L+ GSDLV+ +GKPE + L + V A EV+ +E+ +E + A
Sbjct: 67 LQSVLDLKQRLRDIGSDLVIHMGKPEEAIQGLCREGQQLTVLAQMEVTKEELDVDEGVRA 126
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFK--LGEMPTNYGGFREKVKG-VEIRKTIEALDQLK 298
A+ G ++ WG+TLYH DDLPF+ + E+P + F++KV+ E+R + A +
Sbjct: 127 ALGSRG-RLQLLWGNTLYHKDDLPFRSDMSELPDVFTPFKQKVEARCEVRAPLPAPKE-G 184
Query: 299 GLPSRGDVEPG----------DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQ 348
LP D++P D+ +++ G + A++ + AA + +GGET AL+
Sbjct: 185 ALPLAADLDPARLSRKPSCVEDLNAVVPEGAPRLASLPR----HPNAAIAFEGGETAALR 240
Query: 349 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
RLK + + + + + GA++S K SPWLA GC+SP ++F E + T +
Sbjct: 241 RLKHYLWDTGCISTYFD---TRNGMLGADYSTKFSPWLARGCISPSTIFHEARAFLTLAA 297
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
A E S + W++FEL WRDFFR+ T K+ SA
Sbjct: 298 AEIVKRYEEQHGSNKSTYWVIFELTWRDFFRYFTIKHGSA 337
>gi|147866138|emb|CAN79842.1| hypothetical protein VITISV_014519 [Vitis vinifera]
Length = 584
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/350 (36%), Positives = 182/350 (52%), Gaps = 70/350 (20%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPY 176
NG+ + +IVWFRNDLRV DNE+L A S +VLPVYC DPR +G + GF KTG
Sbjct: 104 NGSGV---AIVWFRNDLRVLDNEALVKAWASSQAVLPVYCVDPRLFGTTHYFGFPKTGAL 160
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA FLIE ++DL++NL RG +L+++ GKPE +L LAK A VYAH+E +E+ E
Sbjct: 161 RAQFLIECLADLKRNLMNRGLNLLIQHGKPEEILPSLAKTFEAHTVYAHKETCSEELNVE 220
Query: 237 EKIEAAMKDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE 280
+ ++ + +++ WGST+YH++DLPF +P Y FR
Sbjct: 221 RLVRNGLRQVVLPPSPGQSTSLSSSNHPKLQLIWGSTMYHIEDLPFSTSSLPDVYTQFR- 279
Query: 281 KVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK 340
K VE + TI + R G P++ D G S S M +
Sbjct: 280 --KSVESKCTIR-------ICIRTPTLLGPPPNIEDWG-SVSRGMRFI------------ 317
Query: 341 GGETEALQR--LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 398
GGE AL R LK + A + + GA++S K SPWLA G LSPR ++
Sbjct: 318 GGEAAALSRDLLKVYKA-------------TRNGMLGADYSTKFSPWLASGSLSPRFIYQ 364
Query: 399 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
E+K+ A ND + W++FEL+WRD+FRF++ KY ++
Sbjct: 365 EVKRYEKERQA----ND--------STYWVLFELIWRDYFRFLSVKYRNS 402
>gi|449437082|ref|XP_004136321.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 185/345 (53%), Gaps = 48/345 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+LN A S +VLPVYC DPR +G + GF KTG RA F++E
Sbjct: 51 VAIVWFRNDLRVLDNEALNKAWISSEAVLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVE 110
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL++NL RG +L+++ GKPE +L LAKA+GA V+A E +E+ E+ + +
Sbjct: 111 CLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALGAHTVFAQMETCSEELYVEKMVSKGL 170
Query: 244 KDEGIE------------------VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG- 284
K + + WG+T+YH+DDLPF +P Y FR+ V+
Sbjct: 171 KTVVLSPTSEKSASAKSSAARSPTFQLVWGTTMYHIDDLPFDTNSLPDVYTQFRKSVEAK 230
Query: 285 VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGET 344
+IR I L PS D G +PSL LGL + + + GGE+
Sbjct: 231 CKIRDCIRLPALLGPAPSIDDW--GSVPSLDKLGLQPPSVVKGM---------RFIGGES 279
Query: 345 EALQRL-KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKT 403
AL R+ + F + + K ++G + G ++S K SPWLA G +SPR + +E+++
Sbjct: 280 AALSRIYEYFWKKDLLRIYKETRNG----MLGPDYSTKFSPWLASGSISPRLIHEEVRRY 335
Query: 404 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
A + W++FEL+WRD+FRF++ KY ++
Sbjct: 336 EREREA------------NQSTYWVLFELIWRDYFRFLSVKYGNS 368
>gi|449505505|ref|XP_004162492.1| PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like
[Cucumis sativus]
Length = 549
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 185/345 (53%), Gaps = 48/345 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+LN A S +VLPVYC DPR +G + GF KTG RA F++E
Sbjct: 51 VAIVWFRNDLRVLDNEALNKAWISSEAVLPVYCVDPRLFGSTCYFGFPKTGALRAQFIVE 110
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL++NL RG +L+++ GKPE +L LAKA+GA V+A E +E+ E+ + +
Sbjct: 111 CLADLKRNLTKRGLNLLIQHGKPEEILPSLAKALGAHTVFAQMETCSEELYVEKMVSKGL 170
Query: 244 KDEGIE------------------VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG- 284
K + + WG+T+YH+DDLPF +P Y FR+ V+
Sbjct: 171 KTVVLSPTSEKSASAKSSAARSPTFQLVWGTTMYHIDDLPFDTNSLPDVYTQFRKSVEAK 230
Query: 285 VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGET 344
+IR I L PS D G +PSL LGL + + + GGE+
Sbjct: 231 CKIRDCIRLPALLGPAPSIDDW--GSVPSLDKLGLQPPSVVKGM---------RFIGGES 279
Query: 345 EALQRL-KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKT 403
AL R+ + F + + K ++G + G ++S K SPWLA G +SPR + +E+++
Sbjct: 280 AALSRIYEYFWKKDLLRIYKETRNG----MLGPDYSTKFSPWLASGSISPRLIHEEVRRY 335
Query: 404 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
A + W++FEL+WRD+FRF++ KY ++
Sbjct: 336 EREREA------------NQSTYWVLFELIWRDYFRFLSVKYGNS 368
>gi|255574119|ref|XP_002527975.1| DNA photolyase, putative [Ricinus communis]
gi|223532601|gb|EEF34387.1| DNA photolyase, putative [Ricinus communis]
Length = 576
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 180/336 (53%), Gaps = 42/336 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIES 184
IVWFRNDLR+ DNESL A S S+LPVYC DPR + + F KTG RA FLIE
Sbjct: 85 CIVWFRNDLRILDNESLLQAWLSSDSLLPVYCVDPRLFHTTHHFAFPKTGALRAQFLIEC 144
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DL+ NL RG +L +R GKPE +L LA+A A VYA +E +E+ E + A++
Sbjct: 145 LADLKNNLMKRGLNLFIRHGKPEDILPSLARAFSAHTVYAQKETCSEELIVERLVSKALQ 204
Query: 245 DEGI-----------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+ +++ WGST+YH+DDLPF +P Y F + V IR ++
Sbjct: 205 RVNLPPSPDKFTSQPKLQLVWGSTMYHIDDLPFNANNIPDVYTQFPKCV----IRGCLKI 260
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLS-QSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
L P D G +PSL LGL Q A + GGET AL R+ +
Sbjct: 261 PVTLAPSPPVDDW--GCVPSLDQLGLQPQKARFIK--------GMRFLGGETAALSRVYE 310
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ ++ K K+ + + G ++S K SPWLA G LSPR +++++K+ A
Sbjct: 311 YF--WKKDLLKIYKE-TRNGMLGPDYSTKFSPWLASGSLSPRFIYEDVKRYENERQA--- 364
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
ND + W++FEL+WRD+FRF++ KY ++
Sbjct: 365 -ND--------STYWVLFELIWRDYFRFLSVKYGNS 391
>gi|449134940|ref|ZP_21770404.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
gi|448886419|gb|EMB16826.1| deoxyribodipyrimidine photolyase [Rhodopirellula europaea 6C]
Length = 488
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 178/326 (54%), Gaps = 29/326 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E L A+ V+C DPR + GF +TGP+RA FLIE +
Sbjct: 4 ALVWFRNDLRTIDHEPLLRASTAD-RCFAVHCIDPRQFETVELGFHRTGPFRARFLIECL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL +L ++ D+V+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQDLLPSLSIDSVHFHYEPGTEEASTAESVQQLCDR 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
G+ +G TL H DDLPF++ + P + FR+++ K E R ++ + G LP
Sbjct: 123 HGVSTHVAYGDTLIHPDDLPFEIADTPGLFTDFRKEIEKQCEARSPLDEPARFNGTLPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-AEYQAQPP 362
DV GDI +L LGLS + ++ N GG+ QR++ + E + +
Sbjct: 182 -DVSAGDILALESLGLSTPPSDAR-------CMNQFPGGQNAGQQRIEDYIWNEDRLRIY 233
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++G + N S K SPWLA GC+SPR + D++++ E
Sbjct: 234 KETRNG----MLEPNDSSKFSPWLAHGCVSPRMIADQVRRYE------------EERVEN 277
Query: 423 AGSNWLMFELLWRDFFRFITKKYSSA 448
+ W++FELLWRD+FR+I++K+ +
Sbjct: 278 KSTYWMIFELLWRDYFRWISRKHGAT 303
>gi|326799096|ref|YP_004316915.1| DASH family cryptochrome [Sphingobacterium sp. 21]
gi|326549860|gb|ADZ78245.1| cryptochrome, DASH family [Sphingobacterium sp. 21]
Length = 434
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 178/322 (55%), Gaps = 31/322 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLRV DNE L A ++ V+PVY FDPR + +G KTG RA F++ESV
Sbjct: 7 LVWFRNDLRVRDNEILWQALAKADRVVPVYVFDPRQFTPLKNGMHKTGVIRAKFILESVQ 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR +L++ G+DL+V G PE +L LA+ VY HREV+ +E +E A+ +
Sbjct: 67 DLRLSLRSLGADLLVVSGYPEEILPTLAERYQVKEVYHHREVAKEETHISTLVEEALWKK 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+ +++F G TLYH +DLPF + ++P + FR+K+ + IR ++E +++ +P +
Sbjct: 127 RLNLRHFIGHTLYHKEDLPFPIKDIPDAFATFRKKIERETTIRPSVETPVKIE-VPD--N 183
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+E +IPSL LG S G + KGGETE L+RL+ A G+
Sbjct: 184 LEASEIPSLASLGFSAGLI-------GIADQSPFKGGETEGLRRLETLLAGADTASLTGS 236
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
+G+ +SPW+AMGCLS +++ +K K+ D A +
Sbjct: 237 --------FGSEEGTVLSPWIAMGCLSVHTVYHAVK----------KYEDKSLPKKQAAA 278
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
++ LLWRD+FRF+ KK+ +
Sbjct: 279 --IITGLLWRDYFRFMFKKHGN 298
>gi|448546392|ref|ZP_21626556.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548379|ref|ZP_21627646.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557573|ref|ZP_21632762.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702845|gb|ELZ54785.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445714130|gb|ELZ65897.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714474|gb|ELZ66236.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 503
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 182/348 (52%), Gaps = 45/348 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+HDN + A V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLHDNAAFAAACGAD-RVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES++DLR +L+ RGSDLVVR G+PE+VL ELA A AD V H + +E + E +
Sbjct: 65 FRLESLADLRASLRDRGSDLVVREGRPESVLPELAAATDADFVTVHTRPTPEESRVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEAL--DQ 296
E ++ +G+E++ WG TL HLDDLP L ++P Y FR+ V+ E T +A D+
Sbjct: 125 ETELRGDGVELRRVWGHTLTHLDDLPMVLSDLPDTYTTFRKAVESAAEDAGTGDAAVGDE 184
Query: 297 LK------GLPSRGDVE----------PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK 340
G R DV G+ P+L DL + A +
Sbjct: 185 HASDGDPGGRDPRSDVTVPPLPDDAPVAGEFPALSDLVGTADANADRA--PDDRGVLPFD 242
Query: 341 GGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 399
GGET AL R++ + A + K ++G + GA++S K SPWL GCLSPR + E
Sbjct: 243 GGETAALDRVESYVWAGDHLREYKETRNG----LLGADYSSKFSPWLNEGCLSPRYVKAE 298
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ + A ND + WL+FEL WRDFF+F K+ S
Sbjct: 299 VDR----YEARRVEND--------STYWLVFELRWRDFFQFQFAKHGS 334
>gi|321475718|gb|EFX86680.1| hypothetical protein DAPPUDRAFT_307800 [Daphnia pulex]
Length = 520
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 182/330 (55%), Gaps = 33/330 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R +I FRNDLR HDNE + A+ + VLP+YCFDPR + G F KTG +R FL+
Sbjct: 10 RVAICLFRNDLRYHDNEVIALAHKSADFVLPLYCFDPRHFEGTHHYKFPKTGIFRTQFLL 69
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAV--YAHREVSHDEVKSEEKIE 240
ESV D R+ L RGS+L++ KPE L+++ K++ V EV+ +E E++++
Sbjct: 70 ESVEDFRQTLVKRGSNLMIVHSKPEEALLKIFKSLTGLKVTLILQTEVTKEETDVEKRLQ 129
Query: 241 AAMKDEGIEVKYF--WGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQL 297
++ I+ Y WGSTLYH DLPF++ +P +Y GFR+ V + + IR I D++
Sbjct: 130 KICQE--IKASYINCWGSTLYHKGDLPFQINHVPDSYTGFRKDVEEKLRIRPEISMPDKM 187
Query: 298 KGLPSRGDVEP-GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
K +P+ P G++P++ L ++ S +A GGET AL RLK + +
Sbjct: 188 KPVPTFAHEIPWGNLPTIEALNSTKPIPNSS-------SAFPFNGGETAALLRLKSYLWD 240
Query: 357 YQAQPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
A K ++G + G+++S K S WL+ GCLSPR + EL+K
Sbjct: 241 TNAVAQYKETRNG----LIGSDYSTKFSSWLSHGCLSPRRIHWELEKYEL---------- 286
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ + W+ FELLWRD+F+F++ KY
Sbjct: 287 --QRTKNQSTYWVRFELLWRDYFKFVSMKY 314
>gi|448611990|ref|ZP_21662420.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
gi|445742751|gb|ELZ94245.1| deoxyribodipyrimidine photolyase [Haloferax mucosum ATCC BAA-1512]
Length = 486
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 183/329 (55%), Gaps = 30/329 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+VWFR DLR+HDNE+L A + V+PVYCFDP DYG G F+KTG +RA
Sbjct: 6 SLVWFRRDLRLHDNEALVEAC-AADRVVPVYCFDPGDYGTRPFGGDDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ESV+DLR +L+ R SDL+VRVG+PE+V+ ++A A+ A +V H + +E++ E +
Sbjct: 65 FRLESVADLRSSLRDRDSDLLVRVGRPESVIPDVAAAVDAASVTMHTWPTAEEMQVEAAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLK 298
+ +D I+ + FWG TL HLDDLP ++P Y FR V + +R+ + + ++
Sbjct: 125 KREHRDADIDPRRFWGHTLTHLDDLPMAYDDVPDTYTTFRNAVERDATVREPLH-IPEIP 183
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
P+ +PG IPS+ DL + + GGET AL R++ + ++
Sbjct: 184 AFPADA-PDPGSIPSIADLDETLTTPRFD-----DRGVLRFDGGETAALDRVESYI--WE 235
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ K+ + + GA++S K SPWL GCLSPR + E+++ +
Sbjct: 236 GDHLREYKE-TRNRMLGADYSSKFSPWLNEGCLSPRYVQSEVERYE------------DV 282
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSS 447
S + WL FEL WRDFF+F K+ +
Sbjct: 283 RVSNDSTYWLTFELRWRDFFQFQFAKHGT 311
>gi|76802366|ref|YP_327374.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
gi|97047786|sp|Q3IPX9.1|CRYD_NATPD RecName: Full=Cryptochrome DASH
gi|76558231|emb|CAI49819.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
Length = 474
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 180/323 (55%), Gaps = 26/323 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR+DLRV DN +L A + +V+PVY FDP Y +S G KTG +RA F ++V
Sbjct: 4 AVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAV 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR +L+ RG DL+VR G+P TV+ ELA+ GADAVYA + + +E + + +A+ D
Sbjct: 64 ADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASALDD 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
GI ++ W TLYH DDLP ++ + +R++ + + + + +P+
Sbjct: 124 AGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPET--VPTPDG 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE-YQAQPPKG 364
+ PG +P++ LG+S+ + A +GGE+ +R++ + E + K
Sbjct: 182 LTPGPVPTVESLGVSEPPTDDR-------AVLEFEGGESAGKRRVESYIWEGDHLREYKT 234
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + GA++S K SPWLA GCLSPR + E+++ A
Sbjct: 235 TRNG----LLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERVANED------------ 278
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL WRDFF+F +KY +
Sbjct: 279 TYWLVFELAWRDFFQFQFEKYGA 301
>gi|255574121|ref|XP_002527976.1| DNA photolyase, putative [Ricinus communis]
gi|223532602|gb|EEF34388.1| DNA photolyase, putative [Ricinus communis]
Length = 578
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 184/352 (52%), Gaps = 51/352 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIES 184
+IVWFRNDLR+ DNE L A S +VLPVYC DPR + + GF KTG RA F+IE
Sbjct: 58 AIVWFRNDLRILDNEVLFKAWLSSEAVLPVYCVDPRLFQTTHYFGFPKTGALRAQFIIEC 117
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DL+KNL RG +L++R GKPE VL LA+A A VYAH+E +EV E+ + A+
Sbjct: 118 LADLKKNLMKRGLNLLIRHGKPEEVLPSLAQAFAAHTVYAHKETCSEEVHVEKLMNKALH 177
Query: 245 DEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK--------- 281
+ +++ WGST+YH+DDLPF + +P ++ FR+
Sbjct: 178 RVKLSPPPDSKASANTTPKLQLIWGSTMYHIDDLPFNITSLPDDFFDFRKARIIPFFMLL 237
Query: 282 -VKGVE----IRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAA 336
++ VE +R I+ L P+ D G +PS+ LGL + A + GG+ AA
Sbjct: 238 MLQIVEPKCAVRSCIKIPKSLAPPPTVEDW--GCVPSIHQLGLEEQKARGMRFLGGESAA 295
Query: 337 NS----MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 392
S + + L A+ K ++G + G ++S K SPWLA G LS
Sbjct: 296 ISRVYEYLWKKASGICLLNLHCCSDLAKTYKETRNG----LLGLDYSTKFSPWLAQGSLS 351
Query: 393 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKK 444
PR +++E+K+ A ND ++ ++F LLWRD FRF + K
Sbjct: 352 PRFIYEEVKRYERERLA----ND--------STHRVLFVLLWRDHFRFFSIK 391
>gi|307107980|gb|EFN56221.1| hypothetical protein CHLNCDRAFT_51884 [Chlorella variabilis]
Length = 1184
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/343 (34%), Positives = 194/343 (56%), Gaps = 39/343 (11%)
Query: 126 SIVWFR-NDLRVHDNESLNTANN-----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
+++WFR DLR+HDN ++ A + VLP++CFDPR + S+ G KTG +RA
Sbjct: 17 AVIWFRGTDLRLHDNAIVHEAARRVEAGQVAEVLPLFCFDPRYFQASAWGSPKTGQFRAR 76
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA---DAVYAHREVSHDEVKSE 236
FL+ESV DL+ L+A GSDL++ +G+PE VL L G+ V A EV+ +E+ E
Sbjct: 77 FLLESVRDLKARLRALGSDLLICMGRPEEVLPGLMAQRGSGLQTCVLAQSEVTSEELAIE 136
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG--EMPTNYGGFREKVKG-VEIRKTIE- 292
+K+++A+ G ++ +WGST+YHL+DLPF+ G +MP + F++K + ++RK
Sbjct: 137 KKVKSAVVAAGGKLDLYWGSTMYHLEDLPFREGLRDMPDVFTPFKQKCEDRCQVRKPFPA 196
Query: 293 ----ALDQLKGL-PSRGDVEPG---DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGET 344
AL GL +R EP D+ +++ G Q A+ + A +GGE+
Sbjct: 197 PAPGALPLPAGLEAARLAFEPQRVEDLNAVVPEGHPQLASPQR----DTRAVLDFEGGES 252
Query: 345 EALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTA 404
AL RL+ + + + + G ++S K++PWLA GCLSPRS++ ++K+
Sbjct: 253 AALARLRYYLFDSNL---VATYFDTRNGMLGGDYSTKLAPWLAHGCLSPRSVYYDIKRY- 308
Query: 405 TSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ ++G++ + W++FEL+WRDF+RF K+ S
Sbjct: 309 ----------ERQTGTANKSTYWVVFELIWRDFYRFFALKHGS 341
>gi|163754253|ref|ZP_02161376.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
algicida OT-1]
gi|161326467|gb|EDP97793.1| deoxyribodipyrimidine photolyase (photoreactivation) [Kordia
algicida OT-1]
Length = 432
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 172/326 (52%), Gaps = 29/326 (8%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + +VWFRNDLR+HD SL A E+ V+ VYCFDPR + K GF KTG YRA FL
Sbjct: 1 MTKTGLVWFRNDLRIHDQVSLVKAAKENSFVMAVYCFDPRHFEKDRFGFVKTGKYRAQFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
IE+VSDL+ L L V KPE V+ E K +VY+ +E + +EV ++
Sbjct: 61 IETVSDLQNQLNELNIPLFVHFEKPEKVVSEYVKIHKVTSVYSQKEWTSEEVAVSSAVKK 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
A+ +E V+ + L+H +D+P + ++P + FR+K E I L+ + +P
Sbjct: 121 ALSNEVNWVESY-DQFLFHPEDIPMTIDKIPQVFTVFRKK---CEKYAQIRELETISKMP 176
Query: 302 SRGDV-EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA- 359
+ V +P+L DLGL A Q A KGGET ALQRL+ +A +
Sbjct: 177 EKNRVTHLTKVPTLHDLGL---PAFEQ----DTRTAFPFKGGETAALQRLQDYAWNTKKL 229
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
K ++G + G +S K S WLA G LSPR ++ E+KK + I
Sbjct: 230 SYYKKTRNG----LVGTAYSSKFSAWLANGSLSPRMIYHEVKKYESEI------------ 273
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKY 445
+ W++FEL+WRDFF++I+ K+
Sbjct: 274 IKNQSTYWMIFELIWRDFFKYISLKH 299
>gi|448568178|ref|ZP_21637755.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
gi|445727128|gb|ELZ78742.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
Length = 503
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 184/348 (52%), Gaps = 45/348 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLH-DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES++DLR +L+ RGSDLVVR +PE+VL E+A A+ AD V H + +E + E +
Sbjct: 65 FRLESLADLRASLRDRGSDLVVRESRPESVLPEVAAAVDADFVTVHTRPTPEESRVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEAL--DQ 296
E ++D G+E++ FWG TL HLDDLP L ++P Y FR+ V+ E T +A D+
Sbjct: 125 ETELRDGGVELRRFWGHTLTHLDDLPMALSDLPDTYTTFRKAVESAAEDAGTGDAAAGDE 184
Query: 297 LKGLPSRGDVEP----------------GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK 340
G +P GD+P++ DL + A +
Sbjct: 185 HASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADRA--PDDRGVLPFD 242
Query: 341 GGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 399
GGET AL R++ + A + K ++G + GA++S K SPWL GCLSPR + E
Sbjct: 243 GGETAALDRVESYIWAGDHLREYKETRNG----LLGADYSSKFSPWLNEGCLSPRYVKAE 298
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ + A ND + WL+FEL WRDFF+F K+ S
Sbjct: 299 VDR----YEARRVEND--------STYWLVFELRWRDFFQFQFAKHGS 334
>gi|120437052|ref|YP_862738.1| cryptochrome-like DNA photolyase [Gramella forsetii KT0803]
gi|117579202|emb|CAL67671.1| cryptochrome-like DNA photolyase family protein [Gramella forsetii
KT0803]
Length = 438
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 179/323 (55%), Gaps = 29/323 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+ D+E+L TA N ++ +YCFDPR Y K GF KTG +R+ FLIE++
Sbjct: 15 LVWFRNDLRISDHEALTTACNSHEKIIGIYCFDPRHYLKDQFGFIKTGKFRSKFLIETIE 74
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+KNL+ +L+V KPE ++ E+ +VY +E + +E E+++ + D
Sbjct: 75 ELQKNLETLNIELLVFQEKPEDIIPEIISEYSVKSVYFQKEWTQEEHDVEKEVRRLVND- 133
Query: 247 GIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG-LPSRG 304
IE ++ L+H +D+PF ++P Y FR K E + L L LP+R
Sbjct: 134 -IEFNSYYQQFLFHPEDIPFSSFNDIPKVYTEFR---KSCEKYSKVRELVNLPSPLPARN 189
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
E IPS DLG + K +A KGGE +A +R++++ ++++
Sbjct: 190 LPEKAKIPSFKDLGHDD-------YEKDKRSAFPFKGGEDQAKKRIQEYF--WESKNLTR 240
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
K+ ++ I GAN+S K+S WLA G +S R ++ E+KK I +S
Sbjct: 241 YKETRNEMI-GANYSSKLSAWLANGSISARQVYHEVKKFEKEI------------TSNLS 287
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL+WRDFF++I+ K+++
Sbjct: 288 TYWLIFELIWRDFFKYISLKHAN 310
>gi|16330358|ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451814516|ref|YP_007450968.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780485|gb|AGF51454.1| DNA photolyase [Synechocystis sp. PCC 6803]
Length = 453
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 169/296 (57%), Gaps = 30/296 (10%)
Query: 155 VYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELA 214
+YC+DPR + ++ GF KTGP+R++FL +SV +L ++LQ G+ L+V G PE V+ ++A
Sbjct: 1 MYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIA 60
Query: 215 KAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN 274
K I A +Y HREV+ +E+ E + + GIE K +WGSTL H +DLPF + ++P
Sbjct: 61 KQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDL 120
Query: 275 YGGFREKV--KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSL-LDLGLSQSAAMSQVWHG 331
+ FR+ + K + IR A QL LPS P++ L+L Q+ +
Sbjct: 121 FTKFRKDIEKKKISIRPCFFAPSQL--LPS---------PNIKLELTAPPPEFFPQI-NF 168
Query: 332 GKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCL 391
+ + +GGET L RL+ + + K K+ + + GA++S K SPWLA+GCL
Sbjct: 169 DHRSVLAFQGGETAGLARLQDYF--WHGDRLKDYKE-TRNGMVGADYSSKFSPWLALGCL 225
Query: 392 SPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
SPR ++ E+K+ + S ++WL+FELLWRDFFRF+ +KY +
Sbjct: 226 SPRFIYQEVKRYE------------QERVSNDSTHWLIFELLWRDFFRFVAQKYGN 269
>gi|156354106|ref|XP_001623243.1| predicted protein [Nematostella vectensis]
gi|156209922|gb|EDO31143.1| predicted protein [Nematostella vectensis]
Length = 524
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 182/340 (53%), Gaps = 49/340 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--KTGPYRASF 180
++ I RNDLR HDNE+L A+ + VLP+YCFDP D+ K++ F KT YRA F
Sbjct: 7 QKTVICLLRNDLRYHDNEALLWAHKNADFVLPLYCFDP-DHYKTTWRFSLPKTAQYRAKF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKP---ETVLVELAKAIG-ADAVYAHREVSHDEVKSE 236
L+ESV+DLR LQ GS+L++R +P T L EL K + ++ +EV+++E+ E
Sbjct: 66 LLESVTDLRSTLQIHGSNLIIRQCQPLEAVTKLTELLKPVAPVTSIVFQQEVTYEELNVE 125
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE----IRKTIE 292
+ + K GI + WGSTL+H DD+P+K +P Y FR KGVE +R I+
Sbjct: 126 KALVEFCKKSGIHMHTIWGSTLFHKDDIPYKAKTVPDTYTQFR---KGVENQSTVRNLID 182
Query: 293 ALDQLKGL-PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
LK L P +G++ G IP L L S++ + +A GGE EAL RL
Sbjct: 183 MPKNLKPLPPVKGEL--GTIPDLKSL-----LNDSEIKEVDQRSAFPFMGGEQEALSRLG 235
Query: 352 KF------AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT 405
+ A+Y+ + + G N+S K+SPWLA G LSPR ++ +K+
Sbjct: 236 SYLWGTDSVAKYKE---------TRNGLLGENYSTKLSPWLANGSLSPRMVYHRIKQYE- 285
Query: 406 SISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E + + W++FEL+WRD+F+F+ KY
Sbjct: 286 -----------EERVANHSTYWVLFELIWRDYFKFVCLKY 314
>gi|428182576|gb|EKX51436.1| induced by DNA damage [Guillardia theta CCMP2712]
Length = 493
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 47/342 (13%)
Query: 127 IVWFRNDLRVHDNESLN------TANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
++WFRNDLR+ DN + A+N ++SVLPVYCFDPR + +S G KTG RA F
Sbjct: 7 VLWFRNDLRLTDNVLIAEASKRFLASNSALSVLPVYCFDPRFFAQSQYGPRKTGVLRAKF 66
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ESV+DL+K LQ GSDL+V GKPE ++ L ++ V A EV+ +E++ + ++
Sbjct: 67 LLESVADLKKRLQGVGSDLLVLSGKPEVIIPRLMQSGEDTTVLAQEEVTDEELRVDRAVK 126
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLG--EMPTNYGGFREKV-KGVEIRKTIEALDQL 297
A+ G ++ WG TL+H DDLP++ G +MP + F+E + ++RK
Sbjct: 127 RAIAPLGGKLHLLWGHTLFHRDDLPYRQGLTDMPDVFTPFKEACERKSKVRKCFP----- 181
Query: 298 KGLPSRGD--VEPGD-------IPSLLDLGLSQSAAMSQVWHGGKPAANSM---KGGETE 345
P +G+ V P D +PSL LG S +V KP S+ GGE+
Sbjct: 182 --YPVKGNLGVVPEDAKKLDEGLPSLESLGFS----AQEVEGAAKPDPRSVLQFVGGESA 235
Query: 346 ALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT 405
L R++ + + Q + + + GA++S K S WLA GC+SPR +++E+++ +
Sbjct: 236 GLDRIQHYIWK---QDCLKDYFETRNGMIGADYSSKFSAWLAHGCISPRFIYEEVQRYES 292
Query: 406 SISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL+WRDFFR+I K+ +
Sbjct: 293 ------------QRVKNKSTYWLIFELIWRDFFRYICMKHGN 322
>gi|448602354|ref|ZP_21656410.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445747869|gb|ELZ99323.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 507
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/356 (36%), Positives = 186/356 (52%), Gaps = 58/356 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLH-DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFVFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +E++SDLR +L+ RGSDL+VR G PE+VL E+A + AD V H + +E E +
Sbjct: 65 FRLEALSDLRASLRDRGSDLLVREGTPESVLPEVATTVDADVVTVHTRPTPEESSVESAV 124
Query: 240 EAA----MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL- 294
E+A ++D+G+E++ FWG TL H+DDLP L +P Y FR+ V+ +A
Sbjct: 125 ESAVETELRDDGVELRRFWGHTLTHVDDLPMALSALPDTYTTFRKAVESAAEDADADAET 184
Query: 295 ---DQLKGLPSRGD--VEP------------GDIPSLLDLGLSQSAAMSQVWHGGKPAAN 337
G P+ GD EP GD+P++ DL + A PA +
Sbjct: 185 GPGSARGGDPAGGDPLSEPTVPPLPRDAPDAGDLPAVSDLAGNSDAEFD-------PAPD 237
Query: 338 S-----MKGGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCL 391
GGET AL R++ + A + K ++G + GA++S K SPWL GCL
Sbjct: 238 DRGVLPFDGGETAALDRVESYVWAGDHLREYKETRNG----LLGADYSSKFSPWLNEGCL 293
Query: 392 SPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
SPR + E+ + A ND + WL+FEL WRDFF+F K+ S
Sbjct: 294 SPRYVKAEVDRYEDRRVA----ND--------STYWLVFELRWRDFFQFQFAKHGS 337
>gi|290975950|ref|XP_002670704.1| predicted protein [Naegleria gruberi]
gi|284084266|gb|EFC37960.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 189/356 (53%), Gaps = 47/356 (13%)
Query: 124 RASIVWFRNDLRVHDNESL-------NTANNES--VSVLPVYCFDPRDYGKSSSG-FDKT 173
+ +++WFRNDLR+HDNESL N++NN + V VLP+YCFDPR +G S G F K
Sbjct: 9 KKALLWFRNDLRLHDNESLIKTLRLANSSNNNTSKVGVLPLYCFDPRHFGFSRIGKFRKA 68
Query: 174 GPYRASFLIESVSDLRKNLQAR-GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE 232
R FL ESV +LRKNL G L++++G PE ++ L + V+A +EV+ +E
Sbjct: 69 NANRTRFLTESVDNLRKNLMNEWGLKLMIQIGHPEEIIPHLCSQYEIEQVFADKEVTSEE 128
Query: 233 VKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE 292
E+ +E I V Y +G ++ H++DLPFK+ +P + FR KV+ ++ +
Sbjct: 129 TSIEQVLEKQ-----INVNYSYGFSMVHVEDLPFKIENLPHVFTDFRRKVENPKL--IVR 181
Query: 293 ALDQL-----KGLPSR------GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKP-AANSMK 340
L QL K + SR + G P L LG + + + P + K
Sbjct: 182 PLLQLSPNEKKLISSRVVNLIQDENALGKTPDLKVLGYTDEEISEMMENLKDPRSVLHFK 241
Query: 341 GGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 399
GGE EAL RL + + + + K ++G + G +S K+SPWL++GC+SPR ++ E
Sbjct: 242 GGEDEALARLNDYLWTQDRLKTYKETRNG----LVGEAYSSKLSPWLSLGCISPRKIYHE 297
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAV 455
+K+ + + WL+FELLWRD+FRF +K+ + +++ V
Sbjct: 298 VKRYE------------KERVENDSTYWLIFELLWRDYFRFFAEKFGNHIFMLKGV 341
>gi|448600883|ref|ZP_21656262.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
gi|445734896|gb|ELZ86452.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
Length = 503
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/348 (36%), Positives = 182/348 (52%), Gaps = 45/348 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLH-DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES++DLR +L+ RGSDLVVR +PE+VL E+A A+ AD V H + +E + E +
Sbjct: 65 FRLESLADLRASLRDRGSDLVVRESRPESVLPEVAAAVDADFVTVHTRPTPEESRVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEAL---- 294
E ++D G+E++ FWG TL HLDDLP L ++P Y FR+ V+ E T +A
Sbjct: 125 ETELRDGGVELRRFWGHTLTHLDDLPMALSDLPDTYTTFRKAVESAAEDAGTGDAAAGDE 184
Query: 295 DQLKGLPSRGDVEP--------------GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK 340
G P D P GD+P++ DL + A +
Sbjct: 185 HASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADRA--PDDRGVLPFD 242
Query: 341 GGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 399
GGET AL R++ + A + K ++G + GA++S K SPWL GCLS R + E
Sbjct: 243 GGETAALDRVESYVWAGDHLREYKETRNG----LLGADYSSKFSPWLNEGCLSSRYVKAE 298
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ + A ND + WL+FEL WRDFF+F K+ S
Sbjct: 299 VDR----YEARRVEND--------STYWLVFELRWRDFFQFQFAKHGS 334
>gi|292656958|ref|YP_003536855.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293557|ref|ZP_21483662.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372215|gb|ADE04442.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445570418|gb|ELY24981.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 503
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/355 (35%), Positives = 182/355 (51%), Gaps = 59/355 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR D R+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDHRLH-DNAAFAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES++DLR +L+ RGSDLVVR G+PE+VL E+A A+ AD V H + +E + E +
Sbjct: 65 FRLESLADLRASLRDRGSDLVVREGRPESVLPEVAAAVDADFVTVHTRPTPEESRVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E ++D G+E++ FWG TL HLD LP L ++P Y FR+ V+ + A D G
Sbjct: 125 ETELRDGGVELRRFWGHTLTHLDGLPMALSDLPDTYTTFRKAVE-------LAAEDAGTG 177
Query: 300 LPSRGDV--------------EP------------GDIPSLLDLGLSQSAAMSQVWHGGK 333
+ GD EP GD+P++ DL + A +
Sbjct: 178 DAAAGDEHASDGDPGGRDPLPEPTVPPLPDDAPDAGDLPAVSDLVGTADANADRA--PDD 235
Query: 334 PAANSMKGGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 392
GGET AL R++ + A + K ++G + GA++S K SPWL GCLS
Sbjct: 236 RGVLPFDGGETAALDRVESYIWAGDHLREYKEARNG----LLGADYSSKFSPWLNEGCLS 291
Query: 393 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
PR + E+ + ND + WL+FEL WRDFF+F K+ S
Sbjct: 292 PRYVKAEVDRYEDRRVE----ND--------STYWLVFELRWRDFFQFQFAKHGS 334
>gi|390445350|ref|ZP_10233099.1| DASH family cryptochrome [Nitritalea halalkaliphila LW7]
gi|389662339|gb|EIM73907.1| DASH family cryptochrome [Nitritalea halalkaliphila LW7]
Length = 460
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 174/314 (55%), Gaps = 27/314 (8%)
Query: 136 VHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQAR 195
+HD+ L +A ++ V+PVYC DPR +G G KTG +RA FLIE++ DLR L
Sbjct: 1 MHDHAPLFSAYDKDAEVIPVYCVDPRQFGTMRLGLPKTGSFRAKFLIEALRDLRLRLIDL 60
Query: 196 GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255
G+ L + GKPE VL + +A+ ADA+Y E++ +EV E+ +EAA G+ + FW
Sbjct: 61 GAQLHILYGKPEEVLPDFLRAVEADALYFSEEITSEEVAVEKAVEAAAWKAGVATESFWQ 120
Query: 256 STLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSRGDVEPGDIPS 313
TL+H+ DLPF +G+ P + FR++ K +IR A D+L P DV GDIP+
Sbjct: 121 QTLFHISDLPFPVGQTPEVFTQFRKECEKFSKIRPAYPAPDELYYPFP---DVPKGDIPT 177
Query: 314 LLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSI 373
L LGL + + +GGE AL RL+ + E K K+ + +
Sbjct: 178 LAVLGLEEPEVSDR-------GVLVFEGGEGPALARLQTYFWENDCL--KVYKE-TRNGL 227
Query: 374 YGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 433
GA++S K SPWLA+GC+SPR +++E+ + + + WL+FEL+
Sbjct: 228 LGADYSSKFSPWLALGCISPRYIYEEVARYE------------KERKKNQSTYWLVFELI 275
Query: 434 WRDFFRFITKKYSS 447
WRD+F+FI KK+ +
Sbjct: 276 WRDYFKFIAKKHGN 289
>gi|257388282|ref|YP_003178055.1| DASH family cryptochrome [Halomicrobium mukohataei DSM 12286]
gi|257170589|gb|ACV48348.1| cryptochrome, DASH family [Halomicrobium mukohataei DSM 12286]
Length = 483
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 166/325 (51%), Gaps = 25/325 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFR DLR HDN +L A E+ +V+P+YC R G+ G D+ GP+RA FLIES++
Sbjct: 5 LVWFRRDLRCHDNATLRRAVAEADTVVPLYCLPDRLTGEGMFGLDRVGPHRAQFLIESLA 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR++L+ R +L VR G P TV+ E A+ ADAVY +E + A + D
Sbjct: 65 DLRESLRDRDGELYVRSGDPGTVVPEAAEEFDADAVYWQALPGPEERDEAGSVRAGLADA 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS---R 303
GI+ + FW TLYH DDLP E+ + ++++ + + + + P+ R
Sbjct: 125 GIDSETFWTHTLYHRDDLPRPPDEIEDTFTPWKDRTEAKATVRPPKPAPEWVHAPNGGRR 184
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-QPP 362
D+P+L D G + A GGET L R+ + E +
Sbjct: 185 ASSGADDLPTLADFGFGEDEATVD-----DRGVLDWTGGETAGLDRVATYVWERDCLREY 239
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+ ++G + GA++S K SPWL+ GCLSPR + E+++ T ND
Sbjct: 240 RETRNG----LVGADYSSKFSPWLSFGCLSPRQIHREVEQYETDRVE----ND------- 284
Query: 423 AGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL WRDFF++ KY +
Sbjct: 285 -STYWLVFELTWRDFFQYQLAKYGA 308
>gi|322368590|ref|ZP_08043158.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
DX253]
gi|320551874|gb|EFW93520.1| deoxyribodipyrimidine photolyase [Haladaptatus paucihalophilus
DX253]
Length = 520
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 183/351 (52%), Gaps = 51/351 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYG------KSSSGFDKTGPYR 177
+ ++VWFR DLRV DN +L A+ E+ + VYCFDPR++G K S ++KTG +R
Sbjct: 2 KTALVWFRTDLRVRDNRALAVAS-EAERLRCVYCFDPREFGSREYGGKDSFRYEKTGSHR 60
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE- 236
FL ESV LR +L+ RG++LVVR G+PE V+ LA I AD V H + +E E
Sbjct: 61 TRFLRESVEALRISLRERGNELVVRHGRPEEVVPSLAADIDADLVCFHALPTPEERAVER 120
Query: 237 ---EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTI 291
E++ D +V+ WG TLYH DD+P + E+ + FR+ V+ ++R T+
Sbjct: 121 AVTERLADPETDVDADVESIWGHTLYHPDDVPVPVAEIDDTFTTFRQTVERSDADVRPTV 180
Query: 292 EALDQLKGLPSR-------------GD-VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN 337
+ L +P GD ++PG IPS DLG+ +
Sbjct: 181 DTPTTLPPVPEEVTEAGKREGEGEDGDEIDPGTIPSFADLGVEPPTRDER-------RVL 233
Query: 338 SMKGGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 396
+GGE L+RL+++ + + K ++G + G+++S K+SPWL GCLSPR++
Sbjct: 234 DFEGGEPAGLERLERYVWTRDRLREYKETRNG----LLGSDYSSKLSPWLNAGCLSPRTV 289
Query: 397 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
F+ +++ + WL+FELLWRDFF+F K+ S
Sbjct: 290 FETVQRYE------------RERVENESTYWLVFELLWRDFFQFQFAKHGS 328
>gi|383622627|ref|ZP_09949033.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|448699507|ref|ZP_21699315.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
gi|445780215|gb|EMA31115.1| deoxyribodipyrimidine photolyase [Halobiforma lacisalsi AJ5]
Length = 474
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/324 (35%), Positives = 178/324 (54%), Gaps = 30/324 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR+DLR+ DN +L A + V+P+Y DPR G++ G +K G +RA F ES+
Sbjct: 4 AVVWFRDDLRITDNPTLADAVTAADEVVPLYVVDPRKRGETEYGTEKLGAHRARFRRESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+LR LQ RG DL VR G+PETVL E+A + ADAVYA + + +E+++E + + D
Sbjct: 64 LELRAGLQDRGGDLFVRRGRPETVLPEVAGRVDADAVYAQTKPATEELETEVGVRETLPD 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
+ + + W TLYH+ DLP M + +R+ V + +R + D +P+
Sbjct: 124 D-VSFERRWTHTLYHVSDLPTSYERMQDTFTPWRKAVERECSVRDLVAPPD---AVPT-P 178
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPK 363
D+ GD+P++ + GL + A +GGE+ +RL++ F E + + K
Sbjct: 179 DLPAGDVPTVSEYGLEAPTDDDR-------AVLRFEGGESAGKRRLEEYFWEEDRLREYK 231
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
++G + GA +S K SPWLA GCLSPR + +E+++ + S
Sbjct: 232 ETRNG----LLGAAYSSKFSPWLAAGCLSPRWIHEEVRRYE------------DERVSNE 275
Query: 424 GSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRDFF+F K+ S
Sbjct: 276 DTYWLVFELLWRDFFQFQFCKHGS 299
>gi|399576573|ref|ZP_10770328.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
gi|399238017|gb|EJN58946.1| deoxyribodipyrimidine photolyase [Halogranum salarium B-1]
Length = 492
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 172/328 (52%), Gaps = 39/328 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
+++WFR DLR+HDN L A + ++LPVYCFDPR+YG + G ++KTG +RA
Sbjct: 6 ALIWFRRDLRLHDNPVLVDAAR-AEALLPVYCFDPREYGTADFGGPDSFRYEKTGGHRAQ 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F ESV+DLR +L+A GSDL+V G+PETVL L ADAV+ + +E +E +
Sbjct: 65 FRRESVTDLRDSLRAAGSDLLVAHGRPETVLPALVSTTDADAVFFQTLPTSEERTTERAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
A +++EG+ V W TL HL DLP ++ + FR++V+ + + L
Sbjct: 125 TARLREEGVAVHRLWTHTLVHLADLPTPYTDIDDTFTPFRKRVESSSTARDPLDVPTLPP 184
Query: 300 LPS------RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF 353
LPS R E +PSL LG+ + + GGE+ RL +
Sbjct: 185 LPSATSSTKRATFET--LPSLSTLGVENPPVDER-------RSLDFDGGESAGRDRLAAY 235
Query: 354 AAEYQA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
++ + K ++G + GA++S K SPWL GCLSPR + E+ + A
Sbjct: 236 LWDHDCLRVYKETRNG----LLGADYSSKFSPWLNEGCLSPRFVNAEVDRYEAERVA--- 288
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRF 440
ND + WL+FELLWRDFF+F
Sbjct: 289 -ND--------STYWLLFELLWRDFFQF 307
>gi|381205367|ref|ZP_09912438.1| deoxyribodipyrimidine photolyase [SAR324 cluster bacterium JCVI-SC
AAA005]
Length = 516
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/322 (33%), Positives = 176/322 (54%), Gaps = 30/322 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R ++VW RNDLR+HD+ L A +S +L +YC + ++ GF K R FL +
Sbjct: 50 RTTLVWLRNDLRLHDHLPLQCALEKSDRLLLIYCLPDSWFQPTTYGFPKISNVRLEFLFQ 109
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++DLRK+ Q RG +L+ R G P V+ ELA+ D V+AHRE + +E + E+K+ +
Sbjct: 110 SLADLRKHAQERGGELIFRQGNPPKVIAELAEHYQVDGVFAHREHAPEEKREEDKLRETL 169
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
K + ++ + G++L +LPF L ++P + FR++V K V+I + I L P
Sbjct: 170 K---VPLRLYDGNSLLKETELPFSLVDLPKVFSNFRKQVEKEVQISRPIAVPKILPAQPQ 226
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-QP 361
+ PG IP+L D+G + + GGET AL R++ + + A +
Sbjct: 227 --NCLPGIIPNLEDMGFEPLIRDIR-------SVYRFVGGETAALSRVQHYLWKSHAIKT 277
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + + S K+SPWLA+GCLSP+ ++ E+++ + A ND
Sbjct: 278 YKKTRNG----MLKPDDSAKLSPWLALGCLSPKHVYQEVRRYENDVIA----ND------ 323
Query: 422 GAGSNWLMFELLWRDFFRFITK 443
+ WL+FE+ WR+FFR+IT+
Sbjct: 324 --STYWLIFEIWWREFFRWITR 343
>gi|443244150|ref|YP_007377375.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
gi|442801549|gb|AGC77354.1| deoxyribodipyrimidine photo-lyase [Nonlabens dokdonensis DSW-6]
Length = 444
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 180/338 (53%), Gaps = 41/338 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--------KTGPY 176
+++VWFRNDLRV DN SL A ++ V+ VYCFDP Y +S GFD KTG Y
Sbjct: 2 SNLVWFRNDLRVTDNHSLKAACDKEGDVIAVYCFDPAFYKESDFGFDLDFKLPFTKTGKY 61
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
RA F++E++ +L+ +L+ G L++ P V +L K ++ +E + DE++ E
Sbjct: 62 RAQFILEALENLKVDLEEHGIPLLIYHNAPAVVFPDLIKEHQIKKIFLQKEWTCDELQQE 121
Query: 237 EKIEAAMKDEGI--EVK--YFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKT 290
EK+ A++ G+ +VK + L+H DD+PF+ ++P + FR+K K EIR
Sbjct: 122 EKLGEALEQAGLKDQVKGHRVYDQFLFHPDDVPFESFNQIPRVFTEFRKKCEKQSEIRDL 181
Query: 291 IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL 350
+ D + LP VE D+PSL DLGL + + +A KGG T A +RL
Sbjct: 182 VNIDDYKQELPK---VEQTDLPSLKDLGLEEFEKDHR-------SAFPWKGGATAAWERL 231
Query: 351 KKFAAEYQA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
+ E + Q K ++G + G ++S K S WLA+G +S R ++ E+K +
Sbjct: 232 DHYFWETKKLQYYKKTRNG----LIGTDYSSKFSAWLAIGSISAREIYWEVKHFEKEV-- 285
Query: 410 ASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL+WRDFF++++ K+ S
Sbjct: 286 ----------KKNQDTYWLIFELIWRDFFKYVSLKHES 313
>gi|255533599|ref|YP_003093971.1| DASH family cryptochrome [Pedobacter heparinus DSM 2366]
gi|255346583|gb|ACU05909.1| cryptochrome, DASH family [Pedobacter heparinus DSM 2366]
Length = 430
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 45/332 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+HDNE L A +S S+LPVY FDPR + + G KTG RASFL+ES+
Sbjct: 7 LVWFRNDLRLHDNEMLVEAIAKSDSILPVYFFDPRYFENTRFGTAKTGIVRASFLLESIL 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
LRK Q G D+++ GKPE ++ +L + VY HREV +E + +E +
Sbjct: 67 SLRKAFQRFGGDILLVQGKPEDMIRDLVEQFDIAEVYHHREVGPEETEISGHVEDLLWTL 126
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK----TIEALDQLKGLPS 302
I +K+F G TLY+ +DLPF + ++P + F++K + I K T E +D ++
Sbjct: 127 KINLKHFIGHTLYNKEDLPFPIKDIPDVFAQFKKKTERDAIVKACFLTPEHIDFVE---- 182
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF----AAEYQ 358
+ + G +PSL DLG A G GGE LQ L + A Y
Sbjct: 183 --NADWGQLPSLKDLGFETVA--------GAMIEKYATGGEDSGLQHLAQLLEAGADIYL 232
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
Q K + FS ++S WL +GCLSPR ++ ++K+
Sbjct: 233 KQNTKHTPE-------KPGFSSRLSAWLTIGCLSPRMVYWKVKEA--------------E 271
Query: 419 GSSGAGSNW--LMFELLWRDFFRFITKKYSSA 448
G G +N+ + LLWRD+FRF+ KK+ A
Sbjct: 272 GVFGLNANFSQIFLGLLWRDYFRFMFKKHGIA 303
>gi|433461813|ref|ZP_20419414.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
gi|432189636|gb|ELK46722.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
Length = 481
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 170/329 (51%), Gaps = 38/329 (11%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++ ++VWFRNDLRVHD+ L+ A V+ +Y FDP Y + G KT +RA FL
Sbjct: 1 MQNGALVWFRNDLRVHDHHPLHQAVQSGKPVIGMYVFDPAAYERGEDGIRKTDRHRARFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
IES+ DLRKNL A G L+VR + + E+ + I DAVY H E+ +E EE +
Sbjct: 61 IESIHDLRKNLGALGIPLIVRCRRTTEAIHEIKEKIKIDAVYVHEEIGREEQTVEENVRQ 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIE--ALDQL 297
A+ D V++ G LY DDLPF + E+P + FR++++ G +RK I A +
Sbjct: 121 ALPDTAFHVEH--GHNLYLPDDLPFSIQELPDTFSQFRKRLEKSGTSVRKAIAPPAPEDQ 178
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-AE 356
LP V GDIP+L LG + A GG +EA +RL + +
Sbjct: 179 AELP----VPEGDIPTLETLGFDPAD-----------EAPRYPGGSSEARKRLIDYIFTK 223
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
+ + K ++G + + S K SP+LA GCLSPR ++++ I A + N
Sbjct: 224 DRLKIYKQTRNG----MLKEDDSSKFSPYLANGCLSPRVVYEQ-------IQAYERTN-- 270
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ + L FELLWRD+F + +KY
Sbjct: 271 ---GANESTYMLYFELLWRDYFHLVHRKY 296
>gi|356522420|ref|XP_003529844.1| PREDICTED: LOW QUALITY PROTEIN: blue-light photoreceptor PHR2-like
[Glycine max]
Length = 201
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 120/165 (72%), Gaps = 9/165 (5%)
Query: 52 QPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPH 111
QP+ S + QP+K+KVPTQAS+LTH+SLS +T + SK SFKST+S NPL +SL H
Sbjct: 25 QPRTSPSTTLQPSKLKVPTQASSLTHLSLS--TTPASSKTSFKSTISINPLX--MSLSSH 80
Query: 112 RPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD 171
R DP+N AA+ VWFRNDL + DNE L ANN+S+S+L VYCF+P DYGKS+S F+
Sbjct: 81 RLCDPSNIAAL-----VWFRNDLHLLDNECLTAANNDSLSILLVYCFNPSDYGKSASNFN 135
Query: 172 KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
KTGPYR +FLI+ V DL +NL S+L++ V KPET+L EL K
Sbjct: 136 KTGPYRVAFLIDFVFDLYRNLXVGSSNLIMHVEKPETMLTELVKT 180
>gi|227540558|ref|ZP_03970607.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227239640|gb|EEI89655.1| deoxyribodipyrimidine photolyase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 425
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 174/323 (53%), Gaps = 37/323 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +++WFRNDLR HDNE L ++S ++PVYCFDPR + K SSG KTG +RA F+++
Sbjct: 4 KVTLIWFRNDLRFHDNEILFETVSKSPIIIPVYCFDPRYFSKKSSGHRKTGVHRARFILD 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+V +L++ A G DL+ VG PE ++ LA + V+ HREV+ E E +E A+
Sbjct: 64 AVRELKEKFAAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
I +K+F G TLYH +DLPF + ++P ++ F++K+ + +R+ + + P
Sbjct: 124 WKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVRQPFPTPEVMVTHPH 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+E IP+L +LG + + P ++GGE EAL+++++ +
Sbjct: 184 ---LEKTTIPTLEELGYTAEEIQTA---NNNPI--HLRGGEDEALKKVEEVLS------- 228
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
G + D + +SP++A G LSP ++ ++K D + +
Sbjct: 229 -GQFNEQLDYM-------MLSPYIAAGALSPIYLYHKIK-------------DAKLVLNK 267
Query: 423 AGSNWLMFELLWRDFFRFITKKY 445
+ L +LLWRD+FRF+ KKY
Sbjct: 268 KRTEKLTAQLLWRDYFRFMLKKY 290
>gi|300771338|ref|ZP_07081214.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
gi|300762008|gb|EFK58828.1| cryptochrome DASH [Sphingobacterium spiritivorum ATCC 33861]
Length = 425
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 174/323 (53%), Gaps = 37/323 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +++WFRNDLR HDNE L ++S ++PVYCFDPR + K SSG KTG +RA F+++
Sbjct: 4 KVTLIWFRNDLRFHDNEILFETVSKSPIIIPVYCFDPRYFSKKSSGHRKTGVHRARFILD 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+V +L++ A G DL+ VG PE ++ LA + V+ HREV+ E E +E A+
Sbjct: 64 AVRELKEKFVAMGCDLMSFVGYPEEIIPRLAAKYEVNEVFHHREVASRETIISENVETAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
I +K+F G TLYH +DLPF + ++P ++ F++K+ + +R+ + + P
Sbjct: 124 WKLKINLKHFIGHTLYHKEDLPFPIRDIPNDFMVFKKKIERESTVRQPFPTPEVMVTHPH 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+E IP+L +LG + + P ++GGE EAL+++++ +
Sbjct: 184 ---LEKTTIPTLEELGYTTEEIQTA---NNNPI--HLRGGEDEALKKVEEVLS------- 228
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
G + D + +SP++A G LSP ++ ++K D + +
Sbjct: 229 -GQFNEQLDYM-------MLSPYIAAGALSPIYLYHKIK-------------DAKLVLNK 267
Query: 423 AGSNWLMFELLWRDFFRFITKKY 445
+ L +LLWRD+FRF+ KKY
Sbjct: 268 KRTEKLTAQLLWRDYFRFMLKKY 290
>gi|409098421|ref|ZP_11218445.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 424
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/322 (34%), Positives = 166/322 (51%), Gaps = 33/322 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+HDNE L A ++S S+LPVY DPR +G++ G KTG RA F++ESV
Sbjct: 6 LVWFRNDLRLHDNEMLVEAISKSDSILPVYILDPRSFGETKYGTLKTGNIRAQFILESVL 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
LR +L+ G +L++ G PE ++ L + VY HREV+ +E +E A+
Sbjct: 66 GLRASLKQIGGNLLIAEGNPEDIIPSLVQEYEITEVYHHREVAREETHVSTLVENALWKL 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK-TIEALDQLKGLPSRGD 305
+ +K+F G TLY+ +DLPF + ++P + F++K++ I K A D++
Sbjct: 126 RVNLKHFIGHTLYNKEDLPFPIKDIPDAFNQFKKKIERDSIIKPCFLAPDRINVAEV--- 182
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ G + SL +L LS + A GGE E L L+K Q N
Sbjct: 183 IDWGTLSSLEELHLSPQ-------QKDQRADFEFTGGEAEGLVHLQKVIVAMQQAATAKN 235
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+S WLAMG LSPR ++ E+KK + + +N
Sbjct: 236 ----------LILVSKLSAWLAMGSLSPRKVYWEIKKMEGVPNTKAMFNH---------- 275
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
++ LLWRD+FRF+ KKY +
Sbjct: 276 --ILLGLLWRDYFRFMFKKYGN 295
>gi|255083581|ref|XP_002508365.1| predicted protein [Micromonas sp. RCC299]
gi|226523642|gb|ACO69623.1| predicted protein [Micromonas sp. RCC299]
Length = 488
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 117/342 (34%), Positives = 181/342 (52%), Gaps = 46/342 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANN-----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+VWFRNDLR+ DN ++ A + VLP+Y FDPR + SS G K G +R F
Sbjct: 3 VVWFRNDLRLQDNYAVKQAESIATRTAGCDVLPLYVFDPRTFAPSSWGSPKCGGHRGRFQ 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVE-LAKAIGADAVYAHREVSHDEVKSEEKIE 240
+ESV +L++NL+A GSDL+V VGKPE V+ + L A GA + EV +E++ + K++
Sbjct: 63 LESVLNLKRNLRAIGSDLLVAVGKPEEVIPKYLLDAPGAK----NEEVCSEELRVDAKVK 118
Query: 241 AAMKDEG--IEVKYFWGSTLYHLDDLPFK--LGEMPTNYGGFREKVKG-VEIRKTIEALD 295
+A+K G + WGSTLYH DDLPF+ ++P + FR KV+ E R+ +
Sbjct: 119 SAVKSAGNLNRLDKIWGSTLYHKDDLPFRSDASDLPDVFTPFRNKVESKSEPREPVPP-- 176
Query: 296 QLKGLPSRGDVE-PGDI-------PSLLDLGLSQSAAMSQVWHGGKP-AANSMKGGETEA 346
P++G + P D+ P++ DL + + G P +GGE+ A
Sbjct: 177 -----PAKGALPVPSDMTEAFAFEPTVADLPFANEDERAIAAAGAHPDGVLPFEGGESAA 231
Query: 347 LQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
L R++ + E + + + G ++S K++PWLA GC+SPR + E++K +
Sbjct: 232 LARVRYYVWESEKI---ATYFETRNGMLGGDYSSKLAPWLAHGCVSPRQVVAEVRKFES- 287
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ WL+FEL+WRDFF+F K+ +A
Sbjct: 288 -----------QRVENKSTYWLIFELIWRDFFKFFALKHGNA 318
>gi|302844305|ref|XP_002953693.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
gi|300261102|gb|EFJ45317.1| hypothetical protein VOLCADRAFT_121192 [Volvox carteri f.
nagariensis]
Length = 1025
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 180/377 (47%), Gaps = 71/377 (18%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
A + ++WFRNDLR+HDN ++ A E+ VLPVYCFDPR YG + G KTG
Sbjct: 4 AGCGKRVVLWFRNDLRLHDNYIVHDAVQRVKRGEASEVLPVYCFDPRVYGTTPWGHFKTG 63
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAK-AIGADAVYAHREVSHDEV 233
+RA+FL+E V+DL+ L+ GSDL+V GKPE VL L + + G V EV+ +E
Sbjct: 64 AHRAAFLLECVTDLKSRLRDVGSDLLVAFGKPEEVLPGLLEGSSGPSLVLTAEEVTSEET 123
Query: 234 KSEEKIEAAMKDE----------------GIEVKYFWGSTLYHLDDL----------PFK 267
+++ + A+K + ++ FWG T+YH+DDL F
Sbjct: 124 RTDVAVARALKQQRRPQADAAAAAGGGSGSAKLLRFWGHTMYHIDDLTQPPEGGGKAAFA 183
Query: 268 LG--EMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAA 324
G +MP + FREKV K +RK + LP +GD+ +L + AA
Sbjct: 184 PGMKDMPDVFTPFREKVEKRCPVRKDLP-------LPQKGDLPLPPTEALPAAAAAALAA 236
Query: 325 MSQVWH--------------GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNH 370
W A KGGET AL RL+ + + +
Sbjct: 237 APPTWEQLPYPPAARPPPPTKHPKAVLDFKGGETAALARLRYYLWDSDLIASYFD---TR 293
Query: 371 DSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMF 430
+ + G ++S K +PWLA GC+SPR ++ E++K S + W++F
Sbjct: 294 NGMLGGDYSTKFAPWLAAGCISPRKIYHEIRKYEAQR------------QSNKSTYWVIF 341
Query: 431 ELLWRDFFRFITKKYSS 447
EL+WRD+FRF K+ +
Sbjct: 342 ELIWRDYFRFFALKHGN 358
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 120/291 (41%), Gaps = 65/291 (22%)
Query: 200 VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE------------- 246
V R G+P L + G V EV+ +E +++ + A+K +
Sbjct: 534 VSRHGRPHASSGLLEGSSGPSLVLTAEEVTSEETRTDVAVARALKQQRRPQADAAAAAGG 593
Query: 247 ---GIEVKYFWGSTLYHLDDL----------PFKLG--EMPTNYGGFREKV-KGVEIRKT 290
++ FWG T+YH+DDL F G +MP + FREKV K +RK
Sbjct: 594 GSGSAKLLRFWGHTMYHIDDLTQPPEGGGKAAFAPGMKDMPDVFTPFREKVEKRFPVRKD 653
Query: 291 IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWH--------------GGKPAA 336
+ LP +GD+ +L + AA W A
Sbjct: 654 LP-------LPQKGDLPLPPTEALPAAAAAALAAAPPTWEQLPYPPAARPPPPTKHPKAV 706
Query: 337 NSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 396
KGGET AL RL+ + + + + + G ++S K +PWLA GC+SPR +
Sbjct: 707 LDFKGGETAALARLRYYLWDSDLIASYFD---TRNGMLGGDYSTKFAPWLAAGCISPRKI 763
Query: 397 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ E++K S + W++FEL+WRD+FRF K+ +
Sbjct: 764 YHEIRKYEAQR------------QSNKSTYWVIFELIWRDYFRFFALKHGN 802
>gi|448622828|ref|ZP_21669477.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
gi|445753336|gb|EMA04753.1| deoxyribodipyrimidine photolyase [Haloferax denitrificans ATCC
35960]
Length = 518
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/366 (35%), Positives = 182/366 (49%), Gaps = 71/366 (19%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLH-DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES+SDLR +L+ RGSDL+VR G+PE+VL E+A A+ AD V H + +E E +
Sbjct: 65 FRLESLSDLRASLRDRGSDLLVREGRPESVLPEVAAAVDADVVTVHTRPTPEESSVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI---------RKT 290
E ++D+G+E++ FWG TL H+DDLP L +P Y FR+ V+ R +
Sbjct: 125 ETELRDDGVELRRFWGHTLTHVDDLPMALSALPDTYTTFRKAVESAAEDADADAATGRGS 184
Query: 291 IEALDQLKG-------------------------LPSRGDVEPGDIPSLLDLGLSQSAAM 325
D G LP R + GD+P++ DL A
Sbjct: 185 ARVGDSAVGDHVGRNSSGRNLAGRDPLSEPTVPPLP-RDAPDAGDLPAVSDLVGIPDAEF 243
Query: 326 SQVWHGGKPAANS-----MKGGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFS 379
PA + GGET AL R+ + A + K ++G + GA++S
Sbjct: 244 D-------PAPDDRGVLPFDGGETAALDRVASYIWAGDNLREYKETRNG----LLGADYS 292
Query: 380 CKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 439
K SPWL GCLSPR + E+ + A ND + WL+FEL WRDFF+
Sbjct: 293 SKFSPWLNEGCLSPRYVKAEVDRYEDRRVA----ND--------STYWLVFELRWRDFFQ 340
Query: 440 FITKKY 445
F K+
Sbjct: 341 FQFAKH 346
>gi|255038083|ref|YP_003088704.1| deoxyribodipyrimidine photo-lyase, partial [Dyadobacter fermentans
DSM 18053]
gi|254950839|gb|ACT95539.1| Deoxyribodipyrimidine photo-lyase [Dyadobacter fermentans DSM
18053]
Length = 396
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 158/285 (55%), Gaps = 30/285 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R I WFRNDLR+ DN++L+ A + ++PVY FDPR + K+ GF +TG RA FLIE
Sbjct: 3 RRIIYWFRNDLRLKDNQALSAAVGSADEIIPVYVFDPRQFEKTKLGFRRTGALRARFLIE 62
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV++LR+N++ +G DL++R G PE ++ +LA+ AD VY +E++ E + E + +
Sbjct: 63 SVAELRENIRQKGGDLIIRTGAPEAIVAQLAEDYNADYVYTSKEIAPQETRIESSLSKNL 122
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK----- 298
K +++K FW T+ + DLPF + ++P+ + F E++ + ++ DQ
Sbjct: 123 KTANVDIKLFWMDTMINATDLPFPVSKLPSGFAEF-ERL----LSNDLKIKDQFPTPASI 177
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS--MKGGETEALQRLKKFAAE 356
LP+ DVE G IP L +LG+ + PA + + GGE AL LK++ E
Sbjct: 178 TLPA--DVEAGAIPGLPELGIDPNEI---------PAGTTGPLAGGEARALAVLKEYVEE 226
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 401
Y KD + S ++S WL++GC+S ++ +K
Sbjct: 227 YV------KKDIAYPSAEPLT-DTRLSDWLSLGCVSASYIYRSVK 264
>gi|257053657|ref|YP_003131490.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
gi|256692420|gb|ACV12757.1| cryptochrome, DASH family [Halorhabdus utahensis DSM 12940]
Length = 478
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/332 (34%), Positives = 172/332 (51%), Gaps = 42/332 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
++VW R DLR DN +L A VLPVYCF+PR YG+ + G +D G RA
Sbjct: 5 AVVWLRRDLRTRDNATLAAACAAD-RVLPVYCFEPRRYGQRAFGGAASFEYDGVGAGRAQ 63
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F E+V DLR L+ GSDL VR G+P+ VL +L +A+ AD ++ +E E ++
Sbjct: 64 FEREAVGDLRDRLREIGSDLFVRHGRPDAVLPDLVEAVDADHLHYQTLPIPEERTREHQV 123
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLK 298
A+ E + V+ W TL+H++DLP EMP + +R+ V+ +R+ IEA +
Sbjct: 124 RRALP-EAVTVERHWTHTLHHVEDLPTPYDEMPDTFTPWRQSVEAESRVREPIEA-PAVP 181
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM----KGGETEALQRLKKFA 354
+P+ +PG IP L DLG+ G P + M +GGET +RL+++
Sbjct: 182 PVPADA-PQPGPIPELADLGVV----------GDVPDDDRMPLDFEGGETPGQRRLEQYV 230
Query: 355 AEYQA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
E + + K ++G + G ++S K SPW +GCLSPR ++ +K+
Sbjct: 231 WETDSLRAYKQTRNG----LVGRDYSSKFSPWQNVGCLSPRDVYQTVKEYE--------- 277
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
S + WL FEL WRDFF+F KY
Sbjct: 278 ---RERVSNDSTYWLNFELRWRDFFQFQFAKY 306
>gi|295135590|ref|YP_003586266.1| cryptochrome-like DNA photolyase [Zunongwangia profunda SM-A87]
gi|294983605|gb|ADF54070.1| cryptochrome-like DNA photolyase family protein [Zunongwangia
profunda SM-A87]
Length = 429
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 109/328 (33%), Positives = 178/328 (54%), Gaps = 36/328 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WF N+LRV DN++L A + V+ VYCFDPR + K+ GF KTG +RA FLIES+
Sbjct: 5 LIWFENNLRVKDNKALFEACEKHEQVIAVYCFDPRKFKKTKYGFPKTGKFRAKFLIESIK 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++NL L++ + KPE ++ E+A+ +A+Y E + + E++I AA+K +
Sbjct: 65 NLQENLNQLNISLLIFLQKPEEIIPEIARNHKIEAIYFQEEWTTE----EKQIIAALKKK 120
Query: 247 --GIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPS 302
I+ + F+ L+H +D+ + E+P Y FR+K + V++RK IE Q P
Sbjct: 121 LPTIDFQSFYTQFLFHPEDIAYGDFNEIPKVYTEFRKKCEQYVDVRKEIEIPKQ---KPE 177
Query: 303 RGDVE-PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK-KFAAEYQAQ 360
++ P+L +LGL S+ A S KGGE EA +R+ F +
Sbjct: 178 SNRIKNTSKTPNLKELGLEDYQQDSR-------TAFSFKGGEDEAWKRIDYYFWKTTKLS 230
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + G ++S K+S WLA G +S S+F ++KK I +
Sbjct: 231 EYKQTRNG----LLGKDYSSKLSAWLANGSISAVSIFHQVKKFEHEI------------T 274
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ WL+FEL+WRDFF++ + K+ ++
Sbjct: 275 KNQDTYWLIFELIWRDFFKYTSLKHGNS 302
>gi|159487721|ref|XP_001701871.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
gi|158281090|gb|EDP06846.1| cryptochrome DASH1 [Chlamydomonas reinhardtii]
Length = 469
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/335 (34%), Positives = 168/335 (50%), Gaps = 52/335 (15%)
Query: 127 IVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++WFRNDLR+HDN ++ A E+ VLPVY +DPR + + G KTG +RA F+
Sbjct: 11 VLWFRNDLRLHDNYIVHEAAQRVKRGEASEVLPVYVYDPRFFAATPWGALKTGAHRAKFI 70
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD-AVYAHREVSHDEVKSEEKIE 240
E V+DLR+ LQ GSDLVV VG+PE +L L + GA V EV+ +E + +
Sbjct: 71 QECVADLRQRLQGLGSDLVVAVGQPEQLLPALLEGGGAAPLVLTAEEVTSEEAAVDVAVA 130
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A+K G ++ +WG T+YH DDL ++P + F+EKV ++ L
Sbjct: 131 RAIKPAGGKLLRYWGHTMYHYDDL-----DLPDVFTPFKEKV------------EKRAAL 173
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKP--------AANSMKGGETEALQRLKK 352
P + P P L + AA W P A KGGET AL RLK
Sbjct: 174 P----LPPA--PRLGATAAAALAAPLPGWEQLPPAPPVTHPKAVLDFKGGETAALARLKY 227
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ + + + + G ++S K +PWLA GC+SPR +F E++K +
Sbjct: 228 YLWDSDLLSTYFD---TRNGMLGGDYSTKFAPWLAQGCISPRKIFHEIRKYES------- 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
S + W++FEL+WRDFFRF K+ +
Sbjct: 278 -----QRFSNKSTYWVIFELIWRDFFRFFALKHGN 307
>gi|89890451|ref|ZP_01201961.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
gi|89517366|gb|EAS20023.1| deoxyribodipyrimidine photo-lyase [Flavobacteria bacterium BBFL7]
Length = 442
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 113/334 (33%), Positives = 169/334 (50%), Gaps = 43/334 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--------KTGPYR 177
++VWFRNDLRV DN SL A + V+ +YCFDP Y S+ G D KTG +R
Sbjct: 3 NLVWFRNDLRVTDNHSLKKACDNDGKVIGIYCFDPIFYQNSNFGLDIDLELPFGKTGKFR 62
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
A F+IE++ DLRK L G L+V P V ++ K +Y +E + DEV+ E
Sbjct: 63 AQFIIEAIEDLRKQLDKHGIPLLVYHDSPVNVFPDIIKEYDITNIYLQKEWTRDEVEQEN 122
Query: 238 KIEAAMKDEGIEVK----YFWGSTLYHLDDLPF-KLGEMPTNYGGFREKV-KGVEIRKTI 291
+ A+K +EVK + LYH D+P+ E+PT + FR+K K IR +
Sbjct: 123 LLGTALK--LLEVKPKGHRTYDQFLYHPHDVPYSNFQEIPTVFTQFRKKCEKESHIRTLV 180
Query: 292 EALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
+ D + LPS V IP L DLGL + +A KGG A +RL
Sbjct: 181 DIKDYQQELPS---VVSTTIPQLEDLGLESFEKDHR-------SAFPWKGGAIAAWERLN 230
Query: 352 KFAAEY-QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+ + + Q K ++G + G ++S K+S WLA+GC+S R ++ E+++ +
Sbjct: 231 HYFWDTGKLQYYKKTRNG----LVGIDYSSKLSTWLAIGCISAREIYWEVQRFEKEV--- 283
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKK 444
+ WL+FEL+WRDFF++++ K
Sbjct: 284 ---------KKNQDTYWLIFELIWRDFFKYVSLK 308
>gi|390954368|ref|YP_006418126.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Aequorivita sublithincola DSM 14238]
gi|390420354|gb|AFL81111.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Aequorivita sublithincola DSM 14238]
Length = 434
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/327 (33%), Positives = 172/327 (52%), Gaps = 36/327 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWF DLRV DN SL+ A E+ V+ VY FDPR + + GF KT +RA FLIE+V
Sbjct: 11 LVWFTKDLRVGDNHSLSKALTENEKVIGVYFFDPRHFDTTVYGFKKTEKFRAKFLIETVE 70
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LRKNLQ L+V KPE + +L + ++Y RE + +EV + I+ D
Sbjct: 71 NLRKNLQKLNISLLVFHEKPEVIFPQLVEKYQIKSIYFQREWTSEEVAVSKNIQQKSPDC 130
Query: 247 GIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKG-VEIRKTI---EALDQLKGLP 301
+ Y L+H D+P+ E+P + FR+KV+ ++RK E Q+ +
Sbjct: 131 KLIKTY--DQFLFHSGDIPYSDFSEIPEVFTNFRKKVEANTKVRKCDGKPEIQSQINLVE 188
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ +IP+L DLGL S+ +A KGGE +RLK++ E ++
Sbjct: 189 NN-----TEIPTLSDLGLEDFETDSR-------SAFPFKGGEDAGEERLKEYFWETKSLA 236
Query: 362 P-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + G ++S K S WLA G LSPR +++E+K+ + I +
Sbjct: 237 KYKETRNG----LLGEDYSSKFSAWLANGSLSPRFIYEEVKRFESEI------------T 280
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRD+F++++ K+ S
Sbjct: 281 ENESTYWLIFELLWRDYFKYVSLKHGS 307
>gi|403349181|gb|EJY74032.1| putative bacterial cryptochrome [Oxytricha trifallax]
Length = 593
Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 165/339 (48%), Gaps = 45/339 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESV---SVLPVYCFDPRDYGKSSSGF--DKTGPYRASFL 181
I+WFRNDLR+HDN +N A S ++PV+C+DPR + K F K G R FL
Sbjct: 74 ILWFRNDLRLHDNAIINYAVKHSAPNKQIVPVFCYDPRFHAKKVQQFGTQKCGLVRQRFL 133
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
IE+V + R NL+ GS L+V + +PE + +L + + E+ +E+ E ++
Sbjct: 134 IETVENFRHNLEKMGSKLLVSMERPEEFIPKLIDQECDNTIVYQDEICSEEMAVERAVQK 193
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ K G VK FWGS++YH+DDL F++ +P Y FRE V +R P
Sbjct: 194 SCK--GANVKTFWGSSVYHVDDLGFEIDHLPQVYTKFREVCGRVPVRSLFPN-------P 244
Query: 302 SRGDV----EPGDI--------PSLLDLGLS-QSAAMSQVWHGGKPAANSMKGGETEALQ 348
GD+ P DI P L D G + + A+ + K + GGE AL+
Sbjct: 245 KNGDLPFIENPSDIMTKATIFSPQLEDFGFTKEQIALGK----DKRSVIEFIGGEDAALK 300
Query: 349 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
R K++ E QA + + + G N S + SPW+A G LSPR ++ ++K+ +
Sbjct: 301 RFKEYVYETQAVSHYAD---TRNELLGENVSSRFSPWMAHGSLSPRYIYHKVKEYESKNQ 357
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
K + L+ E+ WRD+ RF KY +
Sbjct: 358 LTEK-----------STKKLIDEVFWRDWCRFWALKYGN 385
>gi|326433957|gb|EGD79527.1| cryptochrome DASH [Salpingoeca sp. ATCC 50818]
Length = 552
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 118/335 (35%), Positives = 173/335 (51%), Gaps = 34/335 (10%)
Query: 124 RASIVWFR-NDLRVHDNESLNTANNESVS-VLPVYCFDPRDYG---KSSSG-FDKTGPYR 177
R ++VWFR +DLR+HD+E L A S V+PVYCFDPR G K+ G F K G R
Sbjct: 10 RPAVVWFRGSDLRIHDHEPLLEAAKASKGHVVPVYCFDPRQVGPAAKTRCGQFPKCGWQR 69
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
F++E V DLR+NLQ GS+LVVRVG+PE V+ ++ GA V+ +EV +E E
Sbjct: 70 TRFIVECVEDLRRNLQRLGSNLVVRVGEPEEVIPDIVSITGATEVFGQKEVCSEETGVEH 129
Query: 238 KIEAAMKDEGIEVKYFWGS-TLYHLDDLPFK--LGEMPTNYGGFREKVKG-VEIRKTIEA 293
++ K + + WG+ TL H DDLP++ ++P + FR+ + V IR
Sbjct: 130 RL---AKRLSVPLTLRWGAITLCHRDDLPYERSCSDLPGVFSQFRKAAEACVPIRPPRPP 186
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF 353
L+ LP +PG +P + L + A + + GGET A R+K +
Sbjct: 187 PPSLQPLPQPIAGDPGHVPPVTQLSPNAPAKADER------GVLTFVGGETVARTRVKHY 240
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
+ KD + + GA++S K SPWLA GC+S R + E+K+
Sbjct: 241 L--WDTDCIATYKD-TRNGLVGADYSSKFSPWLAHGCVSARWIHSEVKRYE--------- 288
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ WL+FELLWRD+FRF+ ++ +A
Sbjct: 289 ---RERVKNNSTYWLVFELLWRDYFRFVALQHGTA 320
>gi|303287382|ref|XP_003062980.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455616|gb|EEH52919.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 561
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/349 (32%), Positives = 183/349 (52%), Gaps = 32/349 (9%)
Query: 116 PNNGAAIRRASIVWFR-NDLRVHDNESLNTAN------NESVSVLPVYCFDPRDYGKSSS 168
P + AA R ++WFR DLR+ DN ++ A+ + V VLPV+CFDPR + S+
Sbjct: 2 PADDAASARV-LLWFRGTDLRLRDNLVVDAASALVASGSGDVDVLPVFCFDPRTFAASAW 60
Query: 169 GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREV 228
G KTG RA FL+ESV DL+++L+ GSDL+V VGKPE V+ G + V EV
Sbjct: 61 GTPKTGGRRARFLLESVLDLKRSLRDVGSDLLVAVGKPEDVIPRYLLEGGTNVVLTQEEV 120
Query: 229 SHDEVKSEEKIEAAMK--DEGIEVKYFWGSTLYHLDDLPFK--LGEMPTNYGGFREKVKG 284
+E + + I +A+K + ++ W ST+YH+DD+PF ++P + FR KV+
Sbjct: 121 HQEERRVDAAIASAVKIANPKNAMRTVWNSTMYHVDDIPFNADASDVPNGFTPFRNKVES 180
Query: 285 VEIRKTIEALDQLKGLP-SRGDVEPGDI---PSLLDLGLSQSAAMSQVWHGGKP-AANSM 339
+ + LP ++ ++ + PSL DL + ++ P A
Sbjct: 181 KATVRAPAPSPKPGALPLAKASIDASVLEYEPSLDDLPFATEDERARAKAPTHPNAVLPF 240
Query: 340 KGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 399
+GGET AL R++ + ++++ K + + + G ++S K+SPWLA GC+S R + E
Sbjct: 241 EGGETAALARVEYYV--WESEKIKTYFE-TRNGMLGGDYSSKLSPWLAHGCVSARHVHRE 297
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
++K + WL+FEL+WRDFF + KK+ +A
Sbjct: 298 VRKYE------------RERVENKSTYWLIFELIWRDFFIYFAKKHGNA 334
>gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus]
Length = 571
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 173/340 (50%), Gaps = 48/340 (14%)
Query: 127 IVWFR-NDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
IVWF+ +DLR+ D+E L A+ ES V V+C D R +G++ G K R FL+ESV
Sbjct: 26 IVWFKYSDLRLEDHEPLALAHRESAQVAHVFCIDDRWFGQTRRGTSKMSAARCRFLLESV 85
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE-------- 237
+DLR L+ RGSDL+VR G PE V+ LA +G +V +H +V SEE
Sbjct: 86 ADLRARLRERGSDLLVRRGHPEDVIPALAARLGGGSVAGVTLFAHTDVCSEEADVHAAVK 145
Query: 238 ------KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVK---GVEI 287
+ VK WG+TL+ + DLPF +P + FR+ V+ ++
Sbjct: 146 SALAAASSAGRGGGAAVAVKEAWGNTLHDVADLPFDFPSGVPEIFTQFRKSVESKYSCKM 205
Query: 288 RKTIEALDQLKGLP---SRGDVE---PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG 341
R + + +P ++ D E PG IP+ +LGL + + G
Sbjct: 206 RPPVPLPSPFRPVPTGTTQDDGEASAPGAIPTTEELGLGTAPERDAR------SVFPFNG 259
Query: 342 GETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL 400
GET L+R++ + E + + K ++G + G+ FS K SPWLA+GCLSPR++ E+
Sbjct: 260 GETAGLRRVQSYIWDEDRLREYKVTRNG----LLGSGFSSKFSPWLALGCLSPRTIVKEI 315
Query: 401 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
+K T A ND + WL+FELLWRDFFR+
Sbjct: 316 RKYETDRIA----ND--------STYWLIFELLWRDFFRY 343
>gi|88802284|ref|ZP_01117811.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
gi|88781142|gb|EAR12320.1| probable bacterial cryptochrome [Polaribacter irgensii 23-P]
Length = 436
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 169/323 (52%), Gaps = 29/323 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRN+LRV DN+SL A V+ VY FDP+ + S GF KT +R FLIE+++
Sbjct: 10 VIWFRNNLRVQDNQSLTKAIENHSKVIAVYFFDPKLFKIDSFGFQKTASFRTKFLIETIT 69
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL+KNL A L+ + PE + L +Y +E + +E+ ++ I++ + E
Sbjct: 70 DLKKNLAALNITLLTYMESPENKMHTLCDEFSVGTIYTQKEWTREEIATDNFIKSTLP-E 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
+ + LYH D + ++P + FR+KV K V + K + L R
Sbjct: 129 TVRFVADYDQFLYHPDAVSRDFSKIPDVFTIFRKKVEKTVAVEKEC----TVTKLSERNL 184
Query: 306 VEPGD-IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
+E IPS+ LG S + ++ A KGGET AL+RL+ + E +
Sbjct: 185 IETETAIPSMESLGFSDTKTHAK-------TAFPFKGGETAALERLQYYFFESKKVSFYK 237
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
N + + G ++S K SPWLA G LS ++++ ++K+ + E GS+ +
Sbjct: 238 N---TRNGLVGTDYSTKFSPWLANGSLSAKTIYWKIKEY-----------EAEFGSNQS- 282
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ W++FEL+WRD+F++I+ KY++
Sbjct: 283 TYWVIFELIWRDYFKYISLKYNA 305
>gi|412990437|emb|CCO19755.1| predicted protein [Bathycoccus prasinos]
Length = 558
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 122/369 (33%), Positives = 186/369 (50%), Gaps = 72/369 (19%)
Query: 123 RRASIVWFRNDLRVHDNESLNTA------NNESVSVLPVYCFDPRDYGKSSSGFD----- 171
++ I+W RNDLRVHDN +L A ++E ++P Y FDPR + S FD
Sbjct: 16 KKRVILWHRNDLRVHDNLTLKEALTFCSESSELCELVPTYIFDPR-WFLSDDAFDRSDQK 74
Query: 172 ----------KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA 221
K RA FL+ESV DL++ + GSDL++++GK E VL A+ AD
Sbjct: 75 RREKSLTNAPKCSQRRAEFLLESVLDLKERYKRLGSDLLIKIGKSENVL----DALDADV 130
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK--------LGEMPT 273
V REV DE E K++ K E+K W +TLYH +D+ F+ L ++PT
Sbjct: 131 VVCSREVCEDERALERKVKRKAKG---ELKLVWDNTLYHYEDV-FESGNCYQNGLNDLPT 186
Query: 274 NYGGFREKVKG-VEIRKTI----EALDQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAM 325
+ F+ KV+ V +RK I E D LK S +V E +P++ D+ LS A
Sbjct: 187 QFTQFKNKVESKVSVRKPILNDAELSDGLKKFSSPSNVSEEEMQFVPTIEDIPLSDDARQ 246
Query: 326 SQVWHGGKPAANSM------KGGETEALQRLKKFAAEYQAQPPK-GNKDGNHDSIYGANF 378
H P NS+ KGGE+EAL+R++++ E A ++G + +
Sbjct: 247 M---HAAIPKDNSITPVYSFKGGESEALKRVQRYLYETDAVATYFDTRNGMLEDLE---- 299
Query: 379 SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
S K++P+LA+GC+SPR + +E++K + + W++FEL WRDF+
Sbjct: 300 STKLAPYLALGCISPRFIENEIRKYE------------KERVENKSTYWVIFELTWRDFY 347
Query: 439 RFITKKYSS 447
RF ++ +
Sbjct: 348 RFFALRHGA 356
>gi|403375006|gb|EJY87472.1| hypothetical protein OXYTRI_02690 [Oxytricha trifallax]
Length = 579
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 168/336 (50%), Gaps = 40/336 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESV---SVLPVYCFDPRDYGKSSSGFD--KTGPYRASFL 181
I+WFRNDLR+HDN LN A ++ ++PVY FD R + +D K G R F+
Sbjct: 71 ILWFRNDLRLHDNAILNYAVSQKTKNKEIIPVYSFDQRFLNRKVKKYDTLKCGLVRTRFI 130
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELA-KAIGADAVYAHREVSHDEVKSEE-KI 239
+ES + R L+ GS L+V + KPE L +L K + VY DE+ SEE +
Sbjct: 131 LESAQNFRDRLEKIGSKLLVTMDKPEDFLPQLIDKDVDNTIVY------QDEICSEELAV 184
Query: 240 EAAMKD--EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
E A+K+ EG ++ WGST+YH+DDL F E+P YG FREK V+IR A +
Sbjct: 185 EKAVKESCEGQKIVNLWGSTVYHVDDLGFHPKELPHIYGKFREKTADVKIRPLF-AQPKS 243
Query: 298 KGLPSRGDVEP------GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
LP + P +P+L D G ++ K A GGE A++RL
Sbjct: 244 GQLPYAKEPSPLMEEASKFMPTLKDFGFTKEQIEKP---KDKRACYDFVGGEDNAVKRLN 300
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
++ G+ +++ GAN+S K SPWLA G LSP+ ++ ++K+
Sbjct: 301 EYIM---GTKSVGSYAITRNNLIGANYSSKFSPWLACGALSPKYIYYQVKEFE------- 350
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
++ S + + EL WRDF+RF KY +
Sbjct: 351 -----KTHKSNESTKVFLDELFWRDFYRFWAIKYGN 381
>gi|328857597|gb|EGG06713.1| hypothetical protein MELLADRAFT_48359 [Melampsora larici-populina
98AG31]
Length = 579
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 183/385 (47%), Gaps = 75/385 (19%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVS-------------VLPVYCFDPR--------DY 163
+I FRNDLRVHDN + A++ S LP+Y FD R Y
Sbjct: 5 VTIALFRNDLRVHDNPIIFHAHSSSQKGVDKTRVQRPSDYYLPIYVFDERMVELSGLPGY 64
Query: 164 GKSSS-------GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
+ S GF +TG +R FL ESV +L+ L+ RGSDLV+R G E V + + +A
Sbjct: 65 QREGSEARTGVCGFWRTGCHRLKFLCESVYELQHQLKQRGSDLVIRFGSIEKVTLSIIQA 124
Query: 217 -----IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK--YFWGSTLYHLDDLPFKLG 269
+ D + ++E + +E+++E KI+ A+K I V +F +L H +DLPF
Sbjct: 125 LQDTDVKVDQILINKEYASEEIETEVKIDEALKSFKISVPLLFFHTRSLVHPEDLPFLPS 184
Query: 270 EMPTNYGGFREKVKGVEIRKTIEAL----DQLKGLPSRGDVEPGD--------------- 310
+ P Y FR+ ++ + +K L D+L G+P ++ P
Sbjct: 185 KTPDVYTPFRKHIESLPEQKLCRPLLPCPDRLIGMPPLKEIAPQRGNSGSSYDTMKMDNI 244
Query: 311 IPSLL-------DLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
+ SL+ DL +S ++ +A KGGE+E L+R+ + P +
Sbjct: 245 LESLMKPLLQCPDLACPAFPKLSS-YNFDDRSAFPYKGGESEGLRRINDYFYTGNPAPVR 303
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
KD + + G ++S K SP+LA GCLSPR + EL++ A
Sbjct: 304 SYKD-TRNGLLGQSYSTKFSPFLAHGCLSPRKIILELREHEKKFGA------------NK 350
Query: 424 GSNWLMFELLWRDFFRFITKKYSSA 448
+ W++FELLWRD+F FIT+KY +A
Sbjct: 351 DTYWVLFELLWRDYFVFITQKYGTA 375
>gi|402493769|ref|ZP_10840518.1| DASH family cryptochrome [Aquimarina agarilytica ZC1]
Length = 432
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 163/324 (50%), Gaps = 28/324 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLR++D +SL + + V+ VYCFDPR + S GF KT +R FLIE+V+
Sbjct: 5 LIWFRNDLRINDQQSLALSTQKHHKVIGVYCFDPRQFSTSVFGFKKTEKFRTQFLIETVT 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ NL L V PET+L E+ +Y +E + +E++ ++ A+ +
Sbjct: 65 QLKLNLAKYNIPLFVYSATPETMLPEIVTTHNCTHIYCQKEWTAEELQVTTAVKKALIPK 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
I + L+H D +PF + + P + FR K +E + + + ++ + +
Sbjct: 125 LIAWVESYDQFLFHPDSIPFSVEKTPQIFTHFR---KSIEKQTLVLPIAKISSSFKQQPI 181
Query: 307 EPGD-IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-AEYQAQPPKG 364
E IP L DLG S H P KGGE AL RL + + K
Sbjct: 182 ENNSTIPKLTDLGFDNFETPS---HSAFP----FKGGENAALDRLHNYIWVSKKISYYKK 234
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + G+++S K S WLA G +S ++++ E+KK + ND
Sbjct: 235 TRNG----LLGSDYSSKFSAWLANGSISAKTIYFEIKKYEKEVQK----ND--------S 278
Query: 425 SNWLMFELLWRDFFRFITKKYSSA 448
+ WL+FEL+WRD+F++I+ K+ +A
Sbjct: 279 TYWLIFELIWRDYFKYISLKHQNA 302
>gi|86134106|ref|ZP_01052688.1| cryptochrome, DASH family [Polaribacter sp. MED152]
gi|85820969|gb|EAQ42116.1| cryptochrome, DASH family [Polaribacter sp. MED152]
Length = 436
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 167/320 (52%), Gaps = 27/320 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRN+LR DN S+ A V+ +Y FDP+ + + GF KT +RA FL+E+++
Sbjct: 10 LIWFRNNLRTQDNTSIQKAIQNHDKVIAIYFFDPKYFKEDEFGFQKTAKFRAQFLLETIT 69
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL++ L+ L+ PE L+ + + D +Y +E + +E+ + + + M D
Sbjct: 70 DLKQQLKDLNITLLTYFDAPENQLLNITETYKVDTIYTQKEWTKEELDTNKLVLKTMSDT 129
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGD 305
V+ + LYH + + +P + FR+K+ K V+I++ I +D K S
Sbjct: 130 VNFVEDY-DQFLYHPETVSNNFSNIPNVFTQFRKKLEKYVKIQEEI-LID--KHDDSNLI 185
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
P +IPSL +LG + K +A KGGET AL+RL + E G
Sbjct: 186 HNPTEIPSLKELGFNDFVM-------PKKSAFPFKGGETAALERLNYYLFE---SKKVGF 235
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
+ + G ++S K SPWLA G LS R+++ ++KK + E GS+ + +
Sbjct: 236 YKKTRNGLVGTDYSTKFSPWLANGSLSARTIYYQIKKY-----------EAEFGSNQS-T 283
Query: 426 NWLMFELLWRDFFRFITKKY 445
W++FEL+WRD+F++I+ KY
Sbjct: 284 YWVIFELIWRDYFKYISLKY 303
>gi|374596767|ref|ZP_09669771.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Gillisia limnaea DSM 15749]
gi|373871406|gb|EHQ03404.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Gillisia limnaea DSM 15749]
Length = 433
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 171/326 (52%), Gaps = 31/326 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SIVWFRNDLR+ DN+SL+ A S V+ VY DP + GF KTG +RA FL+ES+
Sbjct: 4 SIVWFRNDLRIADNKSLSVACKNSEMVIGVYFMDPEKFEIGEFGFKKTGKFRAKFLLESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L NL+ L++ KPE+ EL + ++Y +E + +E K+ + + + +
Sbjct: 64 QELWDNLRKLNISLLIIKDKPESKFTELVERFQITSLYLQKEWTPEETKTLKAVTSILP- 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSR 303
E + VK + LYH +D+PF ++P + FR+K K ++R I ++ LP+
Sbjct: 123 EAVNVKEHYNQFLYHPEDIPFDTFRDIPQVFTEFRKKCEKNGKVRPVIPIPEK---LPNE 179
Query: 304 GDV-EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ E ++P+L +LG + A KGGE +A RL+ + E +
Sbjct: 180 NLLSEIANLPTLKELGFENFETDPR-------TAFPFKGGEDQAKIRLEDYFWETKKLAV 232
Query: 363 -KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K S WLA GC+SP ++ E++K + +
Sbjct: 233 YKKTRNG----LLGKDYSSKFSSWLANGCISPTIVYREIRKFEDKV------------TK 276
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FELLWRDFF++I+ K+ +
Sbjct: 277 NEDTYWLIFELLWRDFFKYISLKHGN 302
>gi|363581247|ref|ZP_09314057.1| cryptochrome-like DNA photolyase [Flavobacteriaceae bacterium HQM9]
Length = 432
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 163/324 (50%), Gaps = 28/324 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFRNDLRV+D +SL A + SV+ VYCFDPR + GF KTG +R FLIE+V
Sbjct: 5 LIWFRNDLRVNDQKSLAEATRKHDSVIGVYCFDPRQFSTDPYGFIKTGKFRTQFLIETVE 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ NL L V KPE L E+ A +Y +E + +E+K ++ A+
Sbjct: 65 QLKLNLAKFNIPLFVYFNKPEDKLPEIISAHNCTHIYCQKEWTSEELKVTNAVKKALTKN 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ + LY D++ F + ++P + FR K VE +E L + + +
Sbjct: 125 LVAWIESYDQFLYQPDNIQFTIEKIPQVFTRFR---KSVEKYAKVEDLATIDPAYLQNPI 181
Query: 307 E-PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP-PKG 364
E I +L DLG + S H P KGGE AL+RL + E + K
Sbjct: 182 ENKTKILNLTDLGFTYFETPS---HTAFP----FKGGENSALERLNSYFWETKKLAYYKK 234
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + G ++S K S WLA G +S ++++ ++KK I ND
Sbjct: 235 TRNG----LLGTDYSSKFSAWLANGSISAKTIYIQVKKFEKEIKK----ND--------S 278
Query: 425 SNWLMFELLWRDFFRFITKKYSSA 448
+ WL+FELLWRD+F++I+ K+ ++
Sbjct: 279 TYWLIFELLWRDYFKYISLKHGNS 302
>gi|145341190|ref|XP_001415696.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575919|gb|ABO93988.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 551
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 170/353 (48%), Gaps = 47/353 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNT-----ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
R IVWFRNDLR+ DN + +++ V+PVY FD + S G + G R
Sbjct: 7 RTRVIVWFRNDLRLLDNAVVARAAALRGQSDAAEVVPVYVFDETFFKTSKRGLARFGAGR 66
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--AVYAHREVSHDEVKS 235
F IE V DL++ L+ GSDL+VR GK E V+ EL D V EV+ +E
Sbjct: 67 GKFTIECVDDLKRALRGVGSDLLVRCGKTEDVITELTLTGANDKTIVLTQTEVTSEETDM 126
Query: 236 EEKIEAAMKDEG------IEVKYFWGSTLYHLDDLPFK----LGEMPTNYGGFREKVKG- 284
+ +E A K+ ++ WGSTLYH DDLP+ L ++P + FR KV+
Sbjct: 127 DRAVERASKERARSGGASASMERLWGSTLYHADDLPYDFAGGLHDLPDVFTPFRNKVESK 186
Query: 285 VEIRKTIEA--LDQLKGLPSR-----GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN 337
+R + A + L +P+ EP D+P ++ A + W
Sbjct: 187 CSVRAVVPAPTANALGSVPASVAGLDWMPEPKDLP----FASAEIAPACEKWLKDGADER 242
Query: 338 SM---KGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR 394
S+ KGGE++AL R+K + + + + G ++S K++PWLA+GC+SPR
Sbjct: 243 SVLEFKGGESQALARVKYYLWDSDLLATYFE---TRNGMLGGDYSTKLAPWLALGCVSPR 299
Query: 395 SMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ E+++ + + + W++FEL+WRDFF+F K+ +
Sbjct: 300 YVVSEIRRYES------------ARVENKSTYWVIFELIWRDFFKFFALKHGN 340
>gi|313676689|ref|YP_004054685.1| cryptochrome, dash family [Marivirga tractuosa DSM 4126]
gi|312943387|gb|ADR22577.1| cryptochrome, DASH family [Marivirga tractuosa DSM 4126]
Length = 475
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 173/327 (52%), Gaps = 32/327 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R S++WFR +LR+ DN++L S L +Y FD R++ K+ G ++ + +FL +
Sbjct: 6 RKSLIWFRKNLRLKDNQALLEGVQNSEKYLLLYIFDEREWKKNPVGLKRSSDKKLNFLWQ 65
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV DL++N++A+G LV+ G E ++ L+ DA+YA +E +E + E+ +E
Sbjct: 66 SVLDLKQNIEAKGGQLVMLKGDAEDLIQRLSIENKFDALYAPKESGTEEFELEKSVEDFF 125
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR-EKVKGVEIRKTIEALDQLKG-LP 301
+V ++ +TL+H DD+P+ +G++P + FR E K +R E+ + L +P
Sbjct: 126 IKHRAKVDFYAQTTLFHEDDIPWPIGKLPDIFTQFRKENEKQTGVRDLFESPEDLSASIP 185
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY-QAQ 360
+ E D+ A+ + K N +GGET A +RL+ + + Q +
Sbjct: 186 VKEVFEFSDL------------AIGSISPEEKSVLN-FQGGETHAWERLEYYFWDSDQLK 232
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + G +S K SPWLA+GC+SP+S++ ++K+ +
Sbjct: 233 EYKNTRNG----LLGERYSSKFSPWLALGCISPKSIYYQVKQYE------------KERK 276
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W++FEL+WRD+F F+ KK+ +
Sbjct: 277 KNQSTYWMIFELIWRDYFHFVLKKFGA 303
>gi|448704049|ref|ZP_21700589.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
gi|445796665|gb|EMA47166.1| deoxyribodipyrimidine photolyase [Halobiforma nitratireducens JCM
10879]
Length = 475
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 163/321 (50%), Gaps = 28/321 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR+DLR+ DN +L+ A + ++PVY FDPR G++ K GP+RA F ESV
Sbjct: 4 AVVWFRDDLRLTDNPTLSRALEAAERIVPVYVFDPRRRGETQYDTPKLGPHRARFRRESV 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DLR L+ R DL+V G E V+ EL A AVYA + + +E E + A+
Sbjct: 64 LDLRTRLRERDGDLLVETGHVEDVIPELVDRYDAAAVYAQTKPATEERSRERAVRRALPG 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ ++++ W TL+H +DLP + + + +R +V+ + + P+
Sbjct: 124 D-VDLRSQWTHTLFHPEDLPTAVDRIDDTFTPWRHEVEAEATPRKPAPAPESVPTPA--- 179
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKG 364
V+ +P+L LG A + A +GGE+ +RL+ + E + K
Sbjct: 180 VDASTVPTLSALGFDDPPADHR-------AVLPFEGGESAGKRRLEAYVWERDCLRTYKQ 232
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + GA++S K+S WLA GCLSPR + E+++ A
Sbjct: 233 TRNG----LLGADYSSKLSAWLAAGCLSPRWVHREVQRYERERVA------------NED 276
Query: 425 SNWLMFELLWRDFFRFITKKY 445
+ WL+FELLWRDFF+F K+
Sbjct: 277 TYWLVFELLWRDFFQFQFAKH 297
>gi|126662376|ref|ZP_01733375.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
gi|126625755|gb|EAZ96444.1| probable bacterial cryptochrome [Flavobacteria bacterium BAL38]
Length = 440
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 175/326 (53%), Gaps = 31/326 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR DN SL A E+ +V+ +YC DPR + + GF KT +R+ FL+E+V+
Sbjct: 10 LVWFRNDLRTIDNHSLYNACRENDTVIGIYCLDPRHFEITPFGFKKTEKFRSQFLLETVT 69
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+KNL + L+V G PE ++ E+ ++Y+ E + +E + E++I +
Sbjct: 70 ELQKNLLEKNIRLLVYYGYPEILIPEIIAKYQIHSIYSQHEWTSEENEIEQEIRNLI--S 127
Query: 247 GIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
+ K + L+H DLPF+ ++P + FR+++ K + +R T+ + P
Sbjct: 128 AVNWKNHYDQFLFHPADLPFEDWKKIPEVFTDFRKQIEKKIRVRPTV----AISPKPLTN 183
Query: 305 DVEPGD-IPSLLDLGL-SQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+E IP+L DLG S+++ Q + A KGGE A +R+K + + +
Sbjct: 184 LIEETTPIPTLKDLGFDSEASDFKQ----PEKTAFPFKGGENHAKKRIKDYFWDTKKLAV 239
Query: 363 -KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G N+S K+S WLA G +S R+++ E++K +
Sbjct: 240 YKKTRNG----LIGKNYSSKLSAWLANGSVSARTIYWEVQKFEKKV------------IK 283
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL+WRD+F++I+ K+ +
Sbjct: 284 NEDTYWLIFELIWRDYFKYISLKHGN 309
>gi|298708263|emb|CBJ48326.1| cryptochrome 3 [Ectocarpus siliculosus]
Length = 549
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 115/350 (32%), Positives = 173/350 (49%), Gaps = 53/350 (15%)
Query: 127 IVWFR-NDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWF+ DLR+ D+E L A+ S V V+C D R +G S G + R FL+ESV
Sbjct: 25 VVWFKCTDLRLEDHEPLALAHRNSSHVAHVFCIDDRWFGHSRRGTRRMSAARCRFLLESV 84
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA----VYAHREVSHDEVKSEEKIEA 241
+DL+ L+A+GSDL++R G PE + +A +G+ A VYAH ++ +E +++
Sbjct: 85 ADLQTRLRAKGSDLLIRRGHPENAIPAVAARLGSGASAVTVYAHPDLCSEENDVHAAVKS 144
Query: 242 AMK-----------DEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVK-GVEIR 288
A+ G+ V WG+TL+ DLP+ +P + FR+ V+ +IR
Sbjct: 145 ALSLVGSAGGVGGDATGVSVTEVWGNTLHDPSDLPYDFPNGLPEVFTPFRKAVEPNCKIR 204
Query: 289 KTIEALDQLKGLPSRGDVEPGDIPSL---------LDLGLSQSAAMSQVWHGGKPAANSM 339
+ + LP+ G + P+L L LG + V H
Sbjct: 205 SPVPLPSPFRPLPA-GLHDNAVTPTLTVAIPTTEELGLGTAPERDARSVLH--------F 255
Query: 340 KGGETEALQRLKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 398
GGET L+R++ + E + K ++G + G FS K SPWLA+GCLSPR++
Sbjct: 256 IGGETAGLRRVQTYIWEEDHLREYKVTRNG----LLGGGFSSKFSPWLALGCLSPRTIVK 311
Query: 399 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
E++K T A ND + WL+FELL RDFFR+ KY +A
Sbjct: 312 EIRKYETDRIA----ND--------STYWLIFELLVRDFFRYSAVKYGNA 349
>gi|308799831|ref|XP_003074697.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
gi|116000867|emb|CAL50547.1| CRY DASH-like protein (ISS) [Ostreococcus tauri]
Length = 787
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 109/361 (30%), Positives = 177/361 (49%), Gaps = 48/361 (13%)
Query: 114 LDPNNGAAIRRASIV-WFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSS 167
L+P + + R +V WFRNDLR+ DN + A + V V+PVY FD + S
Sbjct: 234 LEPETTSGMGRTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSK 293
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--AVYAH 225
G + G R F +E V DL+ +L+A GSDL+VR GK V+ EL D +
Sbjct: 294 RGLARFGAGRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQ 353
Query: 226 REVSHDEVKSEEKIEAAMKDEG------IEVKYFWGSTLYHLDDLPFK----LGEMPTNY 275
EV+ +E + + +E A ++ ++ WGSTLYH+DD+PF L ++P +
Sbjct: 354 TEVTSEETEMDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVF 413
Query: 276 GGFREKVKG-VEIRKTIEA--LDQLKGLPSRGDVE-------PGDIP-SLLDLGLSQSAA 324
FR KV+ ++R I A ++L +P+ VE P D+P + ++ +
Sbjct: 414 TPFRNKVESKCKVRDVIPAPTANELGHVPA--SVEGFEWMPKPSDLPFASSEIAMDCDKR 471
Query: 325 MSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISP 384
+ + + KGGE+ AL R+K + E + + G ++S K++P
Sbjct: 472 IKDCLD--ERSVLDFKGGESNALARVKYYLWESDRLATYFE---TRNGMLGGDYSTKLAP 526
Query: 385 WLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKK 444
WLA+GC+SPR + E+++ + + W++FEL+WRDFF+F K
Sbjct: 527 WLALGCVSPRHVVSEIRRYES------------ERVENKSTYWVIFELIWRDFFKFFALK 574
Query: 445 Y 445
+
Sbjct: 575 H 575
>gi|456063890|ref|YP_007502860.1| Deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
gi|455441187|gb|AGG34125.1| Deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
Length = 418
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 164/321 (51%), Gaps = 40/321 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I WFRNDLR+ DN + A + +LPVY D ++ ++ GF++ GP+R +FL S+
Sbjct: 5 IYWFRNDLRLADNPAFTQACLNADYLLPVYVHDTKE-QETVYGFERQGPHRKAFLRASLD 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA--MK 244
DL+ LQA+GSDL+ GK VL+ L K ADA+Y +++++ E+IE ++
Sbjct: 64 DLKTRLQAQGSDLLEFSGKSAEVLLRLLKDSAADAIYC------EQIEAPEEIEQVRILQ 117
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
++G V +W S++ PF L MP + FR +V+ ++ K + ++ K +PS
Sbjct: 118 EQGANVDEYWQSSMLDPQHFPFDLETMPDVFTAFRREVERAQL-KFAQPINAPKKIPS-- 174
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
+P+ L G + V H + GG + A LK++ A K
Sbjct: 175 ------LPAALPQGSILPSRAQSVAH------PYLLGGASHAQAHLKQYLERRLADSYKE 222
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
+ + + G ++S K S WL++GC+S R + +L S A ND G
Sbjct: 223 TR----NQLIGMDYSSKFSAWLSLGCISARDIAAQLNDYENSYGA----ND--------G 266
Query: 425 SNWLMFELLWRDFFRFITKKY 445
+ WL FELLWRD+FRFI KY
Sbjct: 267 TYWLWFELLWRDYFRFIHFKY 287
>gi|75320690|sp|Q5IFN2.1|CRYD_OSTTA RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial;
Flags: Precursor
gi|51948350|gb|AAU14279.1| CRY DASH-like protein [Ostreococcus tauri]
Length = 546
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 171/351 (48%), Gaps = 43/351 (12%)
Query: 123 RRASIVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
R ++WFRNDLR+ DN + A + V V+PVY FD + S G + G R
Sbjct: 3 RTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGR 62
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--AVYAHREVSHDEVKS 235
F +E V DL+ +L+A GSDL+VR GK V+ EL D + EV+ +E +
Sbjct: 63 GKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEM 122
Query: 236 EEKIEAAMKDEG------IEVKYFWGSTLYHLDDLPFK----LGEMPTNYGGFREKVKG- 284
+ +E A ++ ++ WGSTLYH+DD+PF L ++P + FR KV+
Sbjct: 123 DVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESK 182
Query: 285 VEIRKTIEA--LDQLKGLPSRGDVEPGD-IPSLLDLGLSQSAAMSQVWHGGKPAAN---- 337
++R I A ++L +P+ VE + +P DL + S K +
Sbjct: 183 CKVRDVIPAPTANELGHVPA--SVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSV 240
Query: 338 -SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 396
KGGE+ AL R+K + E + + G ++S K++PWLA+GC+SPR +
Sbjct: 241 LDFKGGESNALARVKYYLWESDRLATYFE---TRNGMLGGDYSTKLAPWLALGCVSPRHV 297
Query: 397 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
E+++ + + W++FEL+WRDFF+F K+ +
Sbjct: 298 VSEIRRYES------------ERVENKSTYWVIFELIWRDFFKFFALKHGN 336
>gi|408491986|ref|YP_006868355.1| cryptochrome, DASH family Cry1-like protein [Psychroflexus torquis
ATCC 700755]
gi|408469261|gb|AFU69605.1| cryptochrome, DASH family Cry1-like protein [Psychroflexus torquis
ATCC 700755]
Length = 436
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 167/329 (50%), Gaps = 32/329 (9%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ +IVWFRNDLR D +SL A +VL VYCFDP + + GF KT YRA FLI
Sbjct: 5 QKITIVWFRNDLRTRDQKSLFDACQSENAVLGVYCFDPSHFETTRYGFKKTEKYRAKFLI 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
ESV L NLQ L + P V EL++ +V+ E + +E + E K+++A
Sbjct: 65 ESVEQLSDNLQDLNISLHIAHKHPSEVFKELSERYAITSVFYQTEWTREEKRVEAKVKSA 124
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGL 300
+ + Y L+H +DLP++ ++P Y FR+K K E+R+ + A +
Sbjct: 125 LPNADFIENY--DQFLFHPEDLPYESFQDIPEVYTNFRKKCEKQSEVRQKVPA---PQPR 179
Query: 301 PSRGDVEP-GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
P+ +E P+L DLGL + +A KGGE EA +R++ + + +
Sbjct: 180 PTHHLLEERNQAPNLSDLGLENFETDPR-------SAFPFKGGENEAWKRIEHYFWDTKK 232
Query: 360 -QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
Q K ++G + G ++S K S WLA G +S S++ E++ +
Sbjct: 233 LQYYKKTRNG----LLGTDYSSKFSAWLANGSISAVSIYHEVRAFEKQV----------- 277
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL+WRD+F++I+ K+ +
Sbjct: 278 -KKNQDTYWLIFELIWRDYFKYISLKHGN 305
>gi|332292004|ref|YP_004430613.1| DASH family cryptochrome [Krokinobacter sp. 4H-3-7-5]
gi|332170090|gb|AEE19345.1| cryptochrome, DASH family [Krokinobacter sp. 4H-3-7-5]
Length = 432
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 167/333 (50%), Gaps = 44/333 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VWFRN+LR DN SL A V+ +Y FDPR + GF KT YRA FLIE+
Sbjct: 3 TALVWFRNNLRTQDNSSLTHAIASGKRVIGLYSFDPRQFQIGDFGFKKTEKYRAQFLIET 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE----VKSEEKIE 240
V +L+KNL L+V PE + +L +Y+ +E + +E + EEKI
Sbjct: 63 VQNLKKNLNDLNITLIVTHEHPEVTIPDLIDQHDVSEIYSQKEWTREENEVTIAVEEKIN 122
Query: 241 AAMKDEGIEVKYF--WGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL-DQ 296
A K++ + L+H +D PF G++P + FR+K E T++ L ++
Sbjct: 123 NA--------KHYTHYDQFLFHPEDNPFNSFGDIPQVFTQFRKK---CEKESTVQRLQEK 171
Query: 297 LKGLPSRGDVEP-GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-FA 354
+K LPS+ ++ IP+L +LGL +A GGE EA RL F
Sbjct: 172 IKTLPSKNLLDKESSIPNLQELGLDTFTK-------DHRSAFPWNGGEDEAWNRLNNYFW 224
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ Q K ++G + G ++S K+S WLA G +S R ++ E+KK I
Sbjct: 225 NTKKLQYYKKTRNG----LVGEDYSSKLSAWLANGSISARQIYWEVKKFEKEI------- 273
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
S + WL+FEL+WRD+F++++ K+ +
Sbjct: 274 -----ISNQDTYWLIFELIWRDYFKYVSLKHGN 301
>gi|85818697|gb|EAQ39857.1| cryptochrome, DASH family [Dokdonia donghaensis MED134]
Length = 432
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 163/326 (50%), Gaps = 34/326 (10%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VWFRN+LRV DN SL A V+ VY FDPR Y + GF KT YRA FLIE+
Sbjct: 3 TALVWFRNNLRVQDNASLTAAIATGKRVVGVYYFDPRHYEEGDFGFKKTEKYRAKFLIET 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ +L+ NL R L+V KPE + + K+ ++++ +E + +EVK +E A+
Sbjct: 63 IENLKANLDKRNITLLVYNLKPEEHITSVVKSYKVTSLHSQKEWTAEEVKVTNAVERAIP 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ E+ Y L+H DD+PF + E+P + FR+K K ++R + L L
Sbjct: 123 EVSHELVY--DQFLFHPDDIPFNTITEVPKIFTQFRKKCEKESDVRPIFKELTALPQENI 180
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQV---WHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
V P I +L DLGL + W GG+ AA + Q+L +
Sbjct: 181 LTTVTP--ISTLEDLGLDTFVKDHRTAFPWEGGEDAAWARLNDYFWTTQKLAYY------ 232
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
K ++G + G +S K+S WLA G +S R ++ ++K+ +
Sbjct: 233 ---KKTRNG----LIGEGYSSKLSAWLANGSISARQIYWKVKRFEKEV------------ 273
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKY 445
+ WL+FEL+WRD+F++++ K+
Sbjct: 274 KKNQDTYWLIFELIWRDYFKYVSLKH 299
>gi|260063633|ref|YP_003196713.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
gi|88783078|gb|EAR14251.1| deoxyribodipyrimidine photolyase [Robiginitalea biformata HTCC2501]
Length = 515
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 170/346 (49%), Gaps = 35/346 (10%)
Query: 106 LSLGPHRP--LDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY 163
L P RP NG + A + WFRNDLRV DN L A + S VL V+CFDP D+
Sbjct: 26 LGSNPARPEGWQAKNGETMTTA-LYWFRNDLRVTDNPGLLAACS-SQRVLTVFCFDPADF 83
Query: 164 GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVY 223
+ G + GPYRA FL ESV LR+ LQ L + G P +L + K G ++
Sbjct: 84 REGDYGIRRMGPYRAGFLRESVLALREQLQGLNISLHIHFGPPGDILPGMIKKYGVTDLH 143
Query: 224 AHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV 282
RE + DE + + + + G+ V + L+H +DLP+ ++P + GFR+K
Sbjct: 144 LQREWTRDECLALDAVREGLP-PGVTVHEHYQQFLFHPEDLPYDSFDDIPDVFTGFRKKC 202
Query: 283 -KGVEIRKTIEALDQLKGL-PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK 340
K V +R + + + + GD G +P LG++ A S+ +A +
Sbjct: 203 EKHVSVRSPEDTPARREAVFAPAGD---GGLPGWEALGMAPPRADSR-------SAFPFR 252
Query: 341 GGETEALQRLKKFAAEYQ-AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 399
GGE A RL+++ E + K ++G + G +S K SPWLA G LS R ++ E
Sbjct: 253 GGEPAAWDRLQEYFWESRFLSTYKRTRNG----LVGTRYSTKFSPWLANGSLSARQIYRE 308
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+K+ + + WL+FEL+WRD+F++++ K+
Sbjct: 309 VKRYEQEVEKNRD------------TYWLVFELIWRDYFKYVSLKH 342
>gi|157325494|gb|ABF59870.2| cryptochrome dash [Karenia brevis]
Length = 512
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 169/334 (50%), Gaps = 46/334 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIE 183
A WFR DLR+ D +L+TA +++S+LP+Y FDP + + +G K+ RA FLIE
Sbjct: 9 ARAFWFRTDLRLDDQPALSTACEDALSLLPIYVFDPAKFIDLTLAGARKSSARRARFLIE 68
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ +LR+ L+ RGS L V +G P V+ +L + A A+Y + + +E + E ++E+ M
Sbjct: 69 SLVNLRRRLEDRGSGLAVAIGDPAVVIADLCAS--ASAIYVTQGICSEETQDEARVESKM 126
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPS 302
K + + WG +LY D+ + P + F++K + +IR+ + L +L LP
Sbjct: 127 KAPAL-LSRVWGGSLYFPDECGCNPTKAPLLFSNFKKKAEVFGKIREPLAELTKLPSLP- 184
Query: 303 RGDVEPGDI-------PSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
G V D+ P+L +LG +S ++ GGE AL RL+K+
Sbjct: 185 -GAVCEPDLSQALRFMPTLAELGF-ESEEINAAEFDDPRGVLPFSGGEDAALTRLQKWIW 242
Query: 356 EYQAQPPKGNKDGNH--------DSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
D +H + + G +S K SPWLA+GCLSPR ++ E+++
Sbjct: 243 -----------DDDHLREYWMIRNGMKGEGYSSKFSPWLALGCLSPRRVWKEVQRYE--- 288
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDFFRFI 441
+ + WL+FEL+WRDFF ++
Sbjct: 289 ---------KERVKNKSTYWLVFELMWRDFFVYM 313
>gi|336173299|ref|YP_004580437.1| DASH family cryptochrome [Lacinutrix sp. 5H-3-7-4]
gi|334727871|gb|AEH02009.1| cryptochrome, DASH family [Lacinutrix sp. 5H-3-7-4]
Length = 437
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 173/326 (53%), Gaps = 34/326 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ S+VWF+NDLR++DN +L A NES +V+ +YCFD R + K GF KT +RA FLIE
Sbjct: 7 KTSLVWFKNDLRINDNATLLNAVNESETVIAIYCFDNRYFKKDKFGFKKTEKFRARFLIE 66
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+++DL+ LQA L V E + L G DA+Y +E + +E + ++ +
Sbjct: 67 TITDLKFQLQALNIPLFVYCDYTENSIENLQNTHGFDALYLQKEWTTEENNILDLVKKKL 126
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ +++ + L+H +DL F + +P+ + FR+ + K + +R + + P+
Sbjct: 127 -NPNVKIHEEYNQFLFHPEDLNFNIESLPSVFTEFRKNLEKNILVRTLLPTAN-----PA 180
Query: 303 RGDVEPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-FAAEYQ 358
+ +P+L DLG S +Q +A KGGETEA +RL+ F E +
Sbjct: 181 NSSYTFKNETRVPTLKDLGFSDFKIHNQ-------SAFPFKGGETEAFKRLENYFFQEKK 233
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G ++S K+S WLA G +S ++++ ++K+ T
Sbjct: 234 LGFYKKTRNG----LIGTDYSSKLSAWLANGSISAKTIYWKVKEFET------------L 277
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKK 444
+ WL+FEL+WRD+F++++KK
Sbjct: 278 HFKNQSTYWLIFELIWRDYFKYVSKK 303
>gi|433419586|ref|ZP_20405291.1| DASH family cryptochrome, partial [Haloferax sp. BAB2207]
gi|432199407|gb|ELK55585.1| DASH family cryptochrome, partial [Haloferax sp. BAB2207]
Length = 202
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 107/164 (65%), Gaps = 7/164 (4%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+H + + A ++ V+PVYC DPR+YG G F+KTG +RA
Sbjct: 6 SLAWFRRDLRLH-DNAALAAACDADRVVPVYCVDPREYGDRPFGGPDSFDFEKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES++DLR +L+ RGSDLVVR G+PE+VL E+A + AD V H + +E + E +
Sbjct: 65 FRLESLADLRASLRDRGSDLVVREGRPESVLPEVAATVDADFVTVHTRPTPEESRVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283
E ++D G+E++ FWG TL HLDDLP L ++P Y FR+ V+
Sbjct: 125 ETELRDGGVELRRFWGHTLTHLDDLPMALSDLPDTYTTFRKAVE 168
>gi|397600433|gb|EJK57652.1| hypothetical protein THAOC_22277 [Thalassiosira oceanica]
Length = 667
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 115/358 (32%), Positives = 179/358 (50%), Gaps = 49/358 (13%)
Query: 122 IRRASIVWFRNDLRVHDN----ESLNTANNESVSVLPVYCFDP-RDYG----KSSSGFDK 172
+RR +I WFRNDLR+HDN + ++ E ++LP+Y FD R YG + SG K
Sbjct: 1 MRRLNIHWFRNDLRLHDNPVDLSRHDLSDGEESTLLPIYIFDTSRIYGSEIKSAVSGAIK 60
Query: 173 TGPYRASFLIESVSDLRKNLQAR-GSDLVVRVGKPETVLVELAKA----IGADA------ 221
G RA F IE+V DLR +L+ R G L+V G+PE VL+EL K G A
Sbjct: 61 CGASRAKFTIEAVEDLRLSLEKRLGVCLLVATGRPEDVLLELVKQNVQPRGEQAEQDTSV 120
Query: 222 -VYAHREVSHDEVKSEEKIEAAMK---DEGIEVKY--FWGSTLYHLDDLPFKLG--EMPT 273
+ RE+ H+E++ ++ +EA+++ +G + WGS LY DLPF+ G +PT
Sbjct: 121 NLVCQREICHEELEVDKAVEASLEGFISDGSRFNFEKIWGSLLYEPCDLPFEGGINGIPT 180
Query: 274 NYGGFREKVKG-VEIRKTIEALDQLK---GLPSRG-DVEPGDIPSLLDLGLS-QSAAMSQ 327
+ FR +V+ E+ +EA Q + +RG +P+L LG + Q ++
Sbjct: 181 TFNKFRREVEAKCEVPMPLEAPSQTELQTASVTRGRSYSATSMPTLSGLGYTDQQVESTR 240
Query: 328 VWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLA 387
H +GGET AL R +++ + + + + G ++S K SPWLA
Sbjct: 241 TVHPNSSLPKGYRGGETFALHRARQWIWDRDMLRTYFD---TRNGLIGEDYSTKFSPWLA 297
Query: 388 MGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
G LSPR + E ++ E+ + + W +FELL RD+FR+ ++
Sbjct: 298 CGSLSPRYVALECRRYE------------EARVANKSTYWCVFELLVRDYFRYFAARH 343
>gi|86140426|ref|ZP_01058985.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
MED217]
gi|85832368|gb|EAQ50817.1| probable bacterial cryptochrome [Leeuwenhoekiella blandensis
MED217]
Length = 432
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 165/324 (50%), Gaps = 32/324 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLRV DN SL A+ + + VYCFDPR + + GF KT +RA FLIE+V
Sbjct: 3 NLVWFRNDLRVKDNTSLFKASKNANLLAAVYCFDPRQFQEDQFGFKKTERFRAQFLIETV 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
++LR++L + V +PE +L +L + + D ++ E + +E + K++ +
Sbjct: 63 TELREHLAELNIPIFVYNEQPEDILPQLIERLQIDQLFFQEEWTSEEQEVTRKVKESC-S 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSR 303
++ + L H +DLP+K + +P + +R+K K + IRK + + P
Sbjct: 122 ASVKFTESYDQFLIHPEDLPYKSIEAIPNVFTQWRKKCEKNLNIRKEV----SITEFPQT 177
Query: 304 GDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-FAAEYQAQP 361
E IP+L DL L +A KGGE +AL R++ F +
Sbjct: 178 NFEENSTSIPTLQDLNLESFTP-------DHRSAFPFKGGEQQALNRIEDYFWQTRKLAV 230
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G N+S K+S WLA G +S R+++ ++K + +
Sbjct: 231 YKKTRNG----LTGKNYSSKLSAWLANGGISARTIYWKIKAFE------------QEETK 274
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
+ WL FEL+WRDFF++I+ KY
Sbjct: 275 NESTYWLFFELMWRDFFKYISLKY 298
>gi|331227925|ref|XP_003326630.1| hypothetical protein PGTG_07608 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305620|gb|EFP82211.1| hypothetical protein PGTG_07608 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 596
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 177/392 (45%), Gaps = 78/392 (19%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTA-------------NNESVSVLPVYCFDPRDYGK 165
G R +I FRNDLR+HDN L + N S VLP+Y FD R
Sbjct: 2 GVGPRSLTIALFRNDLRLHDNPILTHSHLATVKEGDAVRRNKVSEYVLPLYVFDERQIEL 61
Query: 166 SS---------------SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET-- 208
S GF +TG +R +FL +SV +L+ L+ GSDL+VR G E
Sbjct: 62 SGLEGYRQHGGPARTEVCGFWRTGSHRLNFLCQSVYELKHQLKKSGSDLLVRFGVVEATT 121
Query: 209 --VLVELAK-AIGADAVYAHREVSHDEVKSEEKIEAAMKD--EGIEVKYFWGSTLYHLDD 263
++ EL + D VY +EV+ +EV +E+++ + + + + F +L H DD
Sbjct: 122 LKIIEELQRNGFSVDHVYMAKEVAFEEVGTEKRLAKLLGELAHKVPLTLFHSRSLVHPDD 181
Query: 264 LPFKLGEMPTNYGGFREKVKGVEIRKTIEAL----DQLKGLPS------RGDVEPGDIPS 313
LPF + + P Y FR KV+ + + L ++L+ P+ + EPG S
Sbjct: 182 LPFTINKTPDVYTPFRSKVESLPADQLCRPLLPLPEKLQPFPALPETILKAAPEPGYSGS 241
Query: 314 LL--------------------DLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF 353
L D+ A +Q + +A +GGE+EAL+RL +
Sbjct: 242 LCEGQGFDEVFARLVKPLLSNPDIPHDPKEANTQDYKPDPRSAFPYQGGESEALRRLDDY 301
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
+ QPP + + + G +S K SP+LA GC+SPR + L W
Sbjct: 302 FFK-GNQPPVRSYKTTRNGLLGHQYSTKFSPFLAFGCISPRKIIHSL------------W 348
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ S + W++FE+LWRD+F FI++K+
Sbjct: 349 DHEAKFGSNKDTYWVLFEILWRDYFIFISQKF 380
>gi|449016857|dbj|BAM80259.1| probable cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 669
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 173/372 (46%), Gaps = 68/372 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSS-SGFDKTGPYRASFLIE 183
+++WFRNDLR+HDNE+L AN S+L VY FD R + GKS GF + G +RA FL E
Sbjct: 105 ALLWFRNDLRLHDNEALRLANRAE-SLLCVYVFDERYFFGKSRFGGFLRIGEHRAYFLRE 163
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE---KIE 240
+ DLR+ L++RG +L+V +G P V+ L + G + +EV+ +E+ +E +
Sbjct: 164 CIVDLRQALRSRGQELIVEIGSPVDVIPRLVQKFGVQHLIFSKEVTEEEIATENALVRTL 223
Query: 241 AAMKDEG-----IEVKYFWGSTLYHLDDLPFKL-------------------------GE 270
A + +G ++ W +TL H++DLP+
Sbjct: 224 AQVAAQGQISAPVQCHAVWNATLVHIEDLPYPFPGKAKDISRRAESPVPKTRGTPAVDRV 283
Query: 271 MPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVW 329
P + FR V + +R+T + + L LP I L + A +++
Sbjct: 284 FPDTFTTFRRLVERSWTVRETWQCPEVLTLLPDDAS-NFNTIDWSGALPIEYPAEATRI- 341
Query: 330 HGGKP-------------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGA 376
G +P A GGET AL RL+ + E Q+ + + + G
Sbjct: 342 -GAEPPKLLLMRPYPDPRACYDFHGGETVALSRLEDWIWETQSL---ASYKETRNGLEGP 397
Query: 377 NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRD 436
++S K S +LA GC+SPR +++ ++ + S + WL+FELLWRD
Sbjct: 398 DYSSKFSCFLAHGCISPRLIYNAVRDFERRV------------ESNESTYWLLFELLWRD 445
Query: 437 FFRFITKKYSSA 448
FFRF + +A
Sbjct: 446 FFRFTAVHHGNA 457
>gi|343427433|emb|CBQ70960.1| related to Deoxyribodipyrimidine photolyase [Sporisorium reilianum
SRZ2]
Length = 596
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 119/390 (30%), Positives = 184/390 (47%), Gaps = 77/390 (19%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNES----------VSVLPVYCFDPRDYGKS------ 166
R I RNDLR+HD+ L+ ++ S VLPVY +D R S
Sbjct: 3 RNILIAVLRNDLRLHDHPILHLCSDPSPASTPFKQPITHVLPVYVWDQRHVEISGFPSLT 62
Query: 167 ------------------SSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET 208
+ G +TG +RA F+ ESV DLR L+ GSDL + G PE+
Sbjct: 63 KATSSGGGGGATQLAKTRALGLWRTGVHRARFVNESVFDLRARLRGVGSDLAMYAGTPES 122
Query: 209 VLVELAKAIGA-----DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
V+ L I A +AVY RE++ +EV + +++ ++ G+++K G +L H D
Sbjct: 123 VVPALIHKIRAGGDSVEAVYLGREINTEEVNVQRRLQGVLEGMGVQMKMLEGKSLIHSRD 182
Query: 264 LPFKLGEMPTNYGGFREKVKG---------------------VEIRKTIEALDQLKGLPS 302
L F + ++P + FR++V+G V+ + + AL KGL +
Sbjct: 183 LGFAVSQLPDVFTHFRKQVEGDDMFRAPLPAPSRLKPFPRVDVDDAEGVYALSAAKGLDT 242
Query: 303 RGDVEPGDI-PSLLDLGLSQSAAMSQVWHGGKP----AANSMKGGETEALQRLKKFAAEY 357
+ VE + P L L +S+V G P +A KGGETEAL RL+ +
Sbjct: 243 KDAVEKCLLQPLLAHPVLGHKELLSKVLKGNTPEVPHSAFPYKGGETEALARLEHYFTGA 302
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
++ P K+ + + GA++S K + LA G LSPR + + AT + D
Sbjct: 303 KSSPGASYKE-TRNQMLGADYSTKFAAALAHGLLSPRL----IAQKATEL-------DAT 350
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+G++ G W++FELLWRD+F F+ K+ S
Sbjct: 351 TGTTKGGGYWILFELLWRDYFYFVGWKFGS 380
>gi|323454932|gb|EGB10801.1| hypothetical protein AURANDRAFT_77923 [Aureococcus anophagefferens]
Length = 526
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/330 (33%), Positives = 156/330 (47%), Gaps = 32/330 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKS----SSGFDKTGPYRASFL 181
+IVW R++LRVHDN L A VLPVY D R + + S G K G RA F
Sbjct: 12 TIVWLRDELRVHDNALLAEAAARGGPVLPVYVLDDRVFDAAATSESGGSRKCGAKRARFT 71
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+E++ DLR L ARGS LVV G+P VL L A+G DA + D SEE+ +
Sbjct: 72 LEALDDLRATLGARGSGLVVERGRPADVLAGLCAAVGGDATV----LCSDAACSEERKDE 127
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTI-EALDQLK 298
A + + W TLYH +DL + + +R KV+ G +R + L
Sbjct: 128 AAVAKVAPLAKVWEGTLYHPEDL--RGVAFHDLFTAWRTKVEKAGTRVRGDVFPKAATLP 185
Query: 299 GLPSRGDVE-PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
P+ D + +P+L LG + A G+ + GGET AL RL+K+ E
Sbjct: 186 APPAGVDAKLAAPLPTLDALGYDAADAACD----GRGDFFAPAGGETAALARLRKYVFEE 241
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
N D + G +S K++PWL+ GC+SPR +++ A +
Sbjct: 242 DRLKDYFN---TRDGMIGQGYSTKLAPWLSRGCVSPR-----------AVARACADYERT 287
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
G + W++FEL WRD+F F +KY S
Sbjct: 288 RGIKNKSTYWVVFELTWRDYFVFYAQKYGS 317
>gi|390955825|ref|YP_006419583.1| DASH family cryptochrome [Aequorivita sublithincola DSM 14238]
gi|390421811|gb|AFL82568.1| cryptochrome, DASH family [Aequorivita sublithincola DSM 14238]
Length = 474
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 163/322 (50%), Gaps = 27/322 (8%)
Query: 120 AAIRRAS-IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRA 178
AI++A+ ++WF+NDLR+HDNE+L A ++ V+ +YC D R + + GF K RA
Sbjct: 4 VAIKKATALMWFKNDLRLHDNEALCNAIACNLPVIYLYCIDSRIFKSLNLGFRKADANRA 63
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
FL +S+ DL+ L+ G L++ G PE ++ +YA E + +E++ +K
Sbjct: 64 IFLKQSLEDLQIKLEELGGHLIIEYGIPEDIIASYVTNYTVKQIYAEEEYAWEELQMMKK 123
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+E + D + FWG TLYH DD+PF++ ++P +R + E L +
Sbjct: 124 VEKLI-DGTASLTTFWGKTLYHKDDIPFEISKIPLTSKAYRIPTGNQSTVR--EPLKEPS 180
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
L + +V+ + P LG + + A + GGE+ + RL + ++
Sbjct: 181 NLNAYDEVKSTEFPEFKILGFNSLEILE--------ADPYVAGGESAGIDRLHYYT--FE 230
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ G + + S+ G ++S K SP+LA+GC+SPR ++ ++K E
Sbjct: 231 TEQLTGYRWSRNKSL-GMDYSSKFSPYLALGCVSPRFIYQQVKHYE------------EI 277
Query: 419 GSSGAGSNWLMFELLWRDFFRF 440
+ WL+FEL+WRD+F F
Sbjct: 278 VKKNQSTWWLVFELVWRDYFTF 299
>gi|372269296|ref|ZP_09505344.1| cryptochrome-like DNA photolyase [Alteromonas sp. S89]
Length = 434
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 168/346 (48%), Gaps = 33/346 (9%)
Query: 127 IVWFRNDLRVHDNESLNTA---NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+VWF ++LR HDN++L A N V+ +YCFDP+ + GF +TG +RA FL++
Sbjct: 3 LVWFLHNLRSHDNQALTQACASANGDTPVIALYCFDPQFFSTDPFGFPRTGKFRAQFLLQ 62
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ DL++ L L++R G P V+ EL ++ RE + DE ++AA
Sbjct: 63 SLEDLKQQLADLNIPLLIRQGAPAQVIPELVTEHAVTELFLQREWTRDERTVLTSLQAAP 122
Query: 244 KDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKV-KGVEIRKTI--EALDQLKG 299
+ + + + L H DDLPF ++ E+P + FR+ + + + IR + + K
Sbjct: 123 AMDAVHIHTDYDQFLIHPDDLPFAEVAELPEVFTQFRKVIEQQLPIRSPLPTPSPRAAKN 182
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-FAAEYQ 358
L + G IPS+ LGL Q A + +A GG + QR+++ F
Sbjct: 183 LTAAGG--SSSIPSIEGLGLEQPKADPR-------SAFPFSGGSSAGKQRIEEYFWNSEN 233
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G +S K+S WLA G LS R ++ ELK+ ++A
Sbjct: 234 ITRYKQTRNG----LIGTEYSSKLSAWLANGSLSAREVYAELKRFEREVTA--------- 280
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGAL 464
+ WL FELLWRD+F++I+ K+ + + A T L
Sbjct: 281 ---NEDTYWLQFELLWRDYFKYISLKHGDRLFALSGIRARKYTWQL 323
>gi|149279053|ref|ZP_01885187.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
sp. BAL39]
gi|149230332|gb|EDM35717.1| deoxyribodipyrimidine photolyase (photoreactivation) [Pedobacter
sp. BAL39]
Length = 410
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 160/311 (51%), Gaps = 35/311 (11%)
Query: 142 LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
L A ++S S+LPVY FDP + + KTG R FL+ESV+ LR + Q G DL+V
Sbjct: 2 LVEAISKSDSILPVYFFDPYYFDPTQFNTVKTGMSRTKFLLESVAALRASFQQLGGDLLV 61
Query: 202 RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL 261
GKPE ++ L VY HREV+ +E + K+E + I +++F G TLY+
Sbjct: 62 LYGKPEELMAGLVDQYEISEVYHHREVAPEETQISTKVEDLLWKLKINLRHFIGHTLYNK 121
Query: 262 DDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLS 320
+DLPF + ++P + F++K + ++ + D ++ + + + G +P L DLG
Sbjct: 122 EDLPFPIKDIPDVFAQFKKKTERDAMVKSCFLSPDHIEFVENE---DWGQLPGLKDLGFE 178
Query: 321 QSAAMSQVWHGGKPAANSMKGGETEALQRLKKF----AAEYQAQPPKGNKDGNHDSIYGA 376
+ + ++++GGE LQ L AA YQ K + +
Sbjct: 179 EETFPGE--------EDALRGGEEAGLQHLSDLLLEGAAVYQKYTAKQSAERE------- 223
Query: 377 NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRD 436
FS ++S WL++GCLSPR ++ +K+ A SK+ S A N ++ LLWRD
Sbjct: 224 AFSSRLSGWLSLGCLSPRMVYWMVKE------AESKF------GSNANFNQMLLGLLWRD 271
Query: 437 FFRFITKKYSS 447
++RF+ KK+ +
Sbjct: 272 YYRFMFKKHGT 282
>gi|298208129|ref|YP_003716308.1| cryptochrome [Croceibacter atlanticus HTCC2559]
gi|83848050|gb|EAP85920.1| probable bacterial cryptochrome [Croceibacter atlanticus HTCC2559]
Length = 421
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 162/324 (50%), Gaps = 44/324 (13%)
Query: 136 VHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQAR 195
++DN LN A + V+ VYCFDPR + ++ GF KTGPYRA FLIE++ +L++ L+ +
Sbjct: 1 MNDNAVLNHAVANNNPVIAVYCFDPRHFTTTTFGFKKTGPYRAQFLIETIKNLKETLKEK 60
Query: 196 GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255
LVV + KPE + L K AVY +E + +E + E ++ ++K + + ++
Sbjct: 61 NITLVVSLTKPEHCISTLVKNHNISAVYYQKEWTQEEQEVEHLVKESIKTSEVTLHSYYD 120
Query: 256 STLYHLDDLPF-KLGEMPTNYGGFREKVKGVEIRKTIEALDQLK-GLPSRGDV-EPGDIP 312
L+H D+PF + E+P Y FR K E + + L L+ LP + E IP
Sbjct: 121 QFLFHPKDIPFSSINEIPKIYTAFR---KACEKKAVVRPLVNLEINLPKTNLLNEDYAIP 177
Query: 313 SLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDS 372
L D GLS+ A KGGETE L+R+ ++ + D NH +
Sbjct: 178 KLKDFGLSEFTVHPN-------TAFPYKGGETEGLKRINEY-----------HWDTNHIA 219
Query: 373 IY--------GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
Y G+ +S K S WLA G +S R ++ ++K +
Sbjct: 220 SYKETRNGMIGSEYSSKYSAWLANGSISARQIYWDIKDYEKKV------------KKNQS 267
Query: 425 SNWLMFELLWRDFFRFITKKYSSA 448
+ W++FEL+WRD+F +I+ KY ++
Sbjct: 268 TYWMIFELIWRDYFMYISLKYGNS 291
>gi|219116188|ref|XP_002178889.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217409656|gb|EEC49587.1| cry-dash from the cryptochrome/photolyase family [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 610
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 161/354 (45%), Gaps = 59/354 (16%)
Query: 129 WFRN-DLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD------------KTGP 175
WFR+ DLR+ DN +L ++ + S +PV+CFD YG + D K GP
Sbjct: 55 WFRHGDLRLLDNPALIHSSKTAESCVPVFCFDDSVYGNDNRTPDTRAPHSNDRGQLKCGP 114
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI----GAD---------AV 222
RA F+++SV DLR++LQ+RGS L V GKP V L A AD +
Sbjct: 115 RRAQFVLDSVQDLRRSLQSRGSALYVAHGKPAQVFQRLVDAWPAVPAADTAAPNGSLLTI 174
Query: 223 YAHREVSHDEVKSEEKIEAAMKDE--GIEVKYFWGSTLYHLDDLPF--KLGEMPTNYGGF 278
REV +E + +++ ++ +V+ WGST+Y LDDLPF L MP + F
Sbjct: 175 VCQREVVREENDAVRAVQSVLRRRFPQAKVQQIWGSTMYELDDLPFATDLANMPDTFTPF 234
Query: 279 REKV-KGVEIRKTIEALDQL---KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKP 334
R KV K +I + QL + PS +P+L +LG + + H +
Sbjct: 235 RNKVEKNCQIGTPLPVPKQLSLPENFPSALKQGLEYLPTLKELGYTDAQIQQVETHDERG 294
Query: 335 AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR 394
+ M + ++ LK + + + G N+S K SPWLA G +SPR
Sbjct: 295 VLHFMVAKQPDSHDCLKDYFE-------------TRNGMLGPNYSTKFSPWLAHGNVSPR 341
Query: 395 SMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ + +K E + W++FELLWRDF +F K+ A
Sbjct: 342 YVAAQCRKYE------------EERVENKSTYWVVFELLWRDFCKFFATKHGDA 383
>gi|313200806|ref|YP_004039464.1| cryptochrome, dash family [Methylovorus sp. MP688]
gi|312440122|gb|ADQ84228.1| cryptochrome, DASH family [Methylovorus sp. MP688]
Length = 467
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 166/330 (50%), Gaps = 33/330 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSV----LPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
I WFR DLR+HD +L A ++ + LPV+ DP + G + GF + P+R ++L
Sbjct: 29 IFWFRRDLRLHDQVALTWAARQAAHIGSWLLPVFVHDPAESGLTRWGFARMAPHRRAWLT 88
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+V L L+A GSDLV G LV L +A+G + + E++ E E+ + AA
Sbjct: 89 SAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALG-NPLLVCEEIAAPE---EQAVVAA 144
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIEALDQLKGL 300
++ G++VK W S+L +++LPF +P + FR ++ V+ + + ++ QL L
Sbjct: 145 LRAAGVKVKTVWQSSLVAVENLPFDPQAVPDTFTTFRHALERGHVQAARPLPSIKQLPPL 204
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAA-----NSMKGGETEALQRLKKFAA 355
PS + IPS + + A S+ W +A + G E ALQ L+++
Sbjct: 205 PSHALLNA--IPSEVASDGTDHAMASEPWPDDARSAFPLGSSGFDGSEQAALQHLQQYCQ 262
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
K ++G + G ++S K SPWLA G LS R + AA + +
Sbjct: 263 RRLPHSYKSTRNG----LIGVDYSSKWSPWLATGALSARQAW-----------AAIQAFE 307
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E G++ + + WL FELLWRD FR++ K+
Sbjct: 308 AEHGANES-TYWLWFELLWRDHFRWLHFKH 336
>gi|358059279|dbj|GAA94967.1| hypothetical protein E5Q_01622 [Mixia osmundae IAM 14324]
Length = 594
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 171/368 (46%), Gaps = 59/368 (16%)
Query: 123 RRASIVWFRNDLRVHDNESLN------TANNESVSVLPVYCFDPR--------DYGKSS- 167
R +I R DLR+HDN + TA+N + VLP+Y FD R DY +
Sbjct: 4 RSIAIALLRCDLRIHDNAIFHATHYGPTASNIT-HVLPLYVFDERQIELSGLPDYKRKGP 62
Query: 168 ------SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI---- 217
GF ++G ++A FL E+V D++K L++ GSDL +R G PE + KA+
Sbjct: 63 PAKTRVCGFWRSGAFKAKFLTEAVFDVQKRLRSAGSDLAIRFGVPEDATISFIKALQKNG 122
Query: 218 -GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYG 276
+ +Y RE+ +E+ SE ++ G++V + L H DDLPFK+ + P +
Sbjct: 123 DTVEGIYLQRELCVEEIASENRLMKGASALGVKVHMYDTKALIHPDDLPFKVDKTPDVFT 182
Query: 277 GFREKVKGVE---IRKTIEALDQLKGLP-----------SRGDVEPGDIPSLLDLGLSQS 322
FR++V+G+ R ++ + K P D + ++ + + LS +
Sbjct: 183 PFRKRVEGLNDKMSRPILKTPNHFKPYPEPLPDSDAYGSQLTDRKREEVLAYILKPLSGT 242
Query: 323 AAMSQVWHGGK-----PAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN 377
+ K +A +GGET AL+RL + + A PP + + G +
Sbjct: 243 EQHQNIMAQKKDPSLIKSAFPYEGGETAALERLDYYFFQ-GAPPPAARYKQTRNQLLGHS 301
Query: 378 FSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 437
+S K+SP+L +G +SPR + + + W+ FELLWRD+
Sbjct: 302 YSTKLSPFLCIGSISPRLVMKAVDDHEAKFELTQD------------TYWVRFELLWRDY 349
Query: 438 FRFITKKY 445
F +I++KY
Sbjct: 350 FLYISRKY 357
>gi|409101128|ref|ZP_11221152.1| DASH family cryptochrome [Pedobacter agri PB92]
Length = 463
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 160/321 (49%), Gaps = 31/321 (9%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ +VWF+NDLR+HDNE+L A E ++ YC + + K + GF K R FL
Sbjct: 1 MKKRGLVWFKNDLRLHDNEALVMAQQECADLVFCYCIEKNGFEKLALGFRKADIIRFKFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++V DLRKNL + G+ L++ + EL K G VYA E + +E+ +
Sbjct: 61 KQAVLDLRKNLTSLGAHLIIGEASALKTIPELVKQYGITDVYAEEEYASEELNLLRSVTD 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGL 300
+ ++WG TLYH DD+PF + +P +R K RKT + L +
Sbjct: 121 VL--PATTFHFYWGKTLYHKDDIPFNIKNIPLTSKAYRIPASKESTPRKTFDIPTNLNAV 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
V+ P+ G S++ + KP + GGETEAL+RL+ + ++++
Sbjct: 179 KQ---VKTHRFPAYSMYGFSKNE-----YEKAKPF---VAGGETEALKRLEYYT--FKSE 225
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA-ASKWNDGESG 419
G + + S G ++S K SP+LA+GC+S R +++++ T + S W
Sbjct: 226 LLTGYRWSRNQSD-GLDYSSKFSPYLALGCISAREIYEKVMAYETKVKKNQSTW------ 278
Query: 420 SSGAGSNWLMFELLWRDFFRF 440
WL+FEL+WRD+F F
Sbjct: 279 -------WLVFELVWRDYFTF 292
>gi|357466479|ref|XP_003603524.1| Cryptochrome DASH [Medicago truncatula]
gi|355492572|gb|AES73775.1| Cryptochrome DASH [Medicago truncatula]
Length = 323
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 105/183 (57%), Gaps = 17/183 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+L A S ++LPVYC DPR + + GF KTG R FL+E
Sbjct: 97 TAIVWFRNDLRVLDNETLYKAWLSSQTLLPVYCIDPRLFATTYHFGFPKTGALRTQFLLE 156
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L+++ GKPE +L L KA GA VYA +E +E+ E + +
Sbjct: 157 CLDDLRKNLMKRGLNLLIQHGKPEDILPSLVKAYGAHTVYAQKETCSEELNVERSVNNRL 216
Query: 244 KDEGI----------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI 287
+ + ++++ WG+T+YH DDLPF + +P Y F + + ++
Sbjct: 217 QQVVVPSNGSAGAATTSNSHPKLQFVWGTTMYHHDDLPFDVPCLPDVYTQFLDFILFPKV 276
Query: 288 RKT 290
KT
Sbjct: 277 IKT 279
>gi|443895003|dbj|GAC72349.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 610
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 118/397 (29%), Positives = 182/397 (45%), Gaps = 88/397 (22%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNES----------VSVLPVYCFDPRD---------- 162
R I RNDLR+HD+ + + VLPVY +D R
Sbjct: 3 RNVLIAVLRNDLRLHDHPIFHLCAEPTPASAAFKKPVTHVLPVYVWDQRHVEVSGFPNLE 62
Query: 163 -------------YGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET 208
+ K+ G +TG +R F+ ESV DLR L+A GSDL + G PE+
Sbjct: 63 KAGKQGGGKGSSQFAKTRELGIWRTGIHRTKFINESVFDLRDRLRAVGSDLAMFAGTPES 122
Query: 209 VLVELAKAI-----GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
V+ L K+I +AVY RE++ +EV + +++A + D K G +L H D
Sbjct: 123 VVPSLIKSIRDKGDTVEAVYLGREINTEEVNVQRRLDAILADLQCPFKLLEGKSLIHSRD 182
Query: 264 LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLK----------------------GL 300
L F + ++P + FR++V+ ++ R+ + A D+LK GL
Sbjct: 183 LGFPVKQLPDVFTHFRKQVESPDMFREPVPAPDKLKPFAEVQVDDAPGCFGLSSKSAQGL 242
Query: 301 PSRGDVEPGDIPSLLD---LG-------LSQSAAMSQVWHGGKPAANSMKGGETEALQRL 350
+ VE + LLD LG ++ S A V H P +GGETEAL+RL
Sbjct: 243 DRKETVEKHLVQPLLDEPVLGHKELLSKVASSPATFDVPHSAFP----YRGGETEALKRL 298
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+ + ++ P K+ + + GA++S K + LA G LSPR + + A +
Sbjct: 299 EHYFGGAKSSPAAHYKE-TRNEMLGADYSTKFAAALAHGLLSPRL----IAQRAAEL--- 350
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
D +G++ G W++FELLWRD+F F+ K+ S
Sbjct: 351 ----DASTGNTKGGGYWILFELLWRDYFYFVGWKFGS 383
>gi|300778230|ref|ZP_07088088.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
gi|300503740|gb|EFK34880.1| possible deoxyribodipyrimidine photo-lyase [Chryseobacterium gleum
ATCC 35910]
Length = 432
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 152/327 (46%), Gaps = 39/327 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ +I+WF DLR D+ESL E + L V+ FD + + GF K G YRA FL+
Sbjct: 5 QKINILWFTKDLRTRDSESLYNIMQEDLPFLAVFVFDSDLFAQKQFGFRKIGKYRARFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
ES+ DL++ L + L+VR K E V E+AK ++ +E + +E + KI
Sbjct: 65 ESIEDLKQRLAKKNIPLLVRQNKTENVFEEIAKEFEIVKIFCQQEWTKEETDLQTKIRKT 124
Query: 243 MKDEGIEVKY-FWGSTLYHLDDLPF----KLGEMPTNYGGFREKV-KGVEIRKTIEALDQ 296
V Y FW + PF L ++P + FR K+ K + IR E +Q
Sbjct: 125 -------VPYAFWEKSYSQFLLHPFFVCKVLDKIPDLFTTFRNKIEKNLLIRPEFET-EQ 176
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
L S E I +L LG ++ +A GGETE L+RL + E
Sbjct: 177 LICYKSEIHFESDKI-TLRSLGFEDFDTDAR-------SAFPFPGGETEGLRRLHSYFPE 228
Query: 357 YQ-AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
Q K ++G + G +S K SPWL+ G LS +++ E+K+
Sbjct: 229 TQHLSRYKETRNG----LVGTEYSSKFSPWLSCGSLSAVTIYHEIKRFEKKF-------- 276
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFIT 442
S + WL FELLWRDFFR+++
Sbjct: 277 ----GSNESTYWLFFELLWRDFFRYVS 299
>gi|372222172|ref|ZP_09500593.1| cryptochrome-like DNA photolyase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 441
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 165/332 (49%), Gaps = 35/332 (10%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
+++ ++I+WFRN+LR DN++L A+ ++ VY P + K+ GF K G YRA F
Sbjct: 14 SLKDSAIIWFRNNLRTQDNKTLVEASKHK-QLIAVYTISPNLFKKNKYGFTKLGKYRAKF 72
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ES+ DL++ L+ L+ +V PE +L EL K + +Y E + +E ++
Sbjct: 73 LLESLRDLKEQLKTYNISLICKVALPEQLLPELIKKYKINTLYLQEEWTQEEEDELTEV- 131
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E +++ F LYH + +PFK ++P + FR+KV+ ++ L+
Sbjct: 132 VKKAPEHLQIVQFKDQFLYHPNAIPFKDYAQIPEVFTNFRKKVEKY------AQVNYLRA 185
Query: 300 LPSRGDVE----PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P+ D E IP L DLG + + +A KGG +A +RL +
Sbjct: 186 TPNTLDKENLIITNAIPELGDLGFDE-------FETDLRSAFPFKGGSKKAHERLHYYLW 238
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ A N + + G ++S K+S WLA G +S R +F E+KK
Sbjct: 239 DSNAI---ANYKETRNGLLGPDYSSKLSAWLANGSISAREVFWEVKKYE----------- 284
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ + + WL+FELLWRD+F++I+ K+ +
Sbjct: 285 -KERTKNQSTYWLIFELLWRDYFKYISLKHKN 315
>gi|71023669|ref|XP_762064.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
gi|46101498|gb|EAK86731.1| hypothetical protein UM05917.1 [Ustilago maydis 521]
Length = 623
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 178/393 (45%), Gaps = 74/393 (18%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVS----------VLPVYCFDPR----------- 161
R I RNDLR+HD+ L+ + + S VLPVY FD R
Sbjct: 3 RNILIALLRNDLRLHDHPILHVCSEPTPSTANFTQPITHVLPVYVFDQRHVEVSGFPRLE 62
Query: 162 ------------DYGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET 208
+Y K+ G +TG +R F+ ESV DLR L+ GSDL + G PE+
Sbjct: 63 KARKDGGGKGSGEYAKTRELGLWRTGIHRIKFINESVFDLRDRLRRLGSDLAMFAGTPES 122
Query: 209 VLVELAKAIGA-----DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
V+ L I A +AVY RE++ +EV +++++ + D + F +L H D
Sbjct: 123 VIASLIHQIRAHGDTVEAVYLSREINTEEVNIQKRLQRMLSDVQCRMHMFETKSLIHSRD 182
Query: 264 LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLK----------------------GL 300
L F + ++P + FR++V+ I R + + D+LK GL
Sbjct: 183 LGFPVSKLPDVFTHFRKQVERNRIWRAPLASPDRLKPFAEVPVEDAAGVYSLSANKQHGL 242
Query: 301 PSRGDVEPGDIPSLLD---LGLSQSAAMSQVWHGGKPAANS---MKGGETEALQRLKKFA 354
+ VE + LLD L ++ A G A+S +GGETEAL RL +
Sbjct: 243 DRKNAVEKCLLQPLLDNPVLAHNELLARVMCKRGQVDVAHSAFPYRGGETEALARLDHYF 302
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ P K + + G ++S K LA+G LSPR + + AT + A+ +
Sbjct: 303 DRSDSCPAASYKQ-TRNQMLGTDYSTKFGAALALGLLSPRL----IAQKATELDNATH-D 356
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ S+ G W++FELLWRD+F F+ K+ S
Sbjct: 357 ATHNASNKGGGYWIIFELLWRDYFYFVGWKFGS 389
>gi|333898405|ref|YP_004472278.1| DASH family cryptochrome [Pseudomonas fulva 12-X]
gi|333113670|gb|AEF20184.1| cryptochrome, DASH family [Pseudomonas fulva 12-X]
Length = 472
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 163/328 (49%), Gaps = 34/328 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WF+ DLR+ D+ +L A S +LP+Y DP G + G +RA FL+ES+
Sbjct: 3 ALLWFKQDLRLDDHPALQAAL-ASNCLLPLYVLDPALLQFDEFGSRRIGVHRARFLLESL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK-IEAAMK 244
+ L L+ RGS L+V GKPE V+ +L V ++ DE+ +E+ + A ++
Sbjct: 62 TALDSALRQRGSKLLVVSGKPEEVIAQLVGQFDMRQV-----ITLDEIAPQERAVIARVR 116
Query: 245 DE--GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE-IRKTIEALDQLKGLP 301
D + ++ + L+ +LP L ++PT Y FR + + + + A DQL LP
Sbjct: 117 DALGPVPLRTAQSNGLFSEAELPCPLDQLPTVYSQFRTLIDARQYVFQPQSAPDQLPPLP 176
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ-AQ 360
D+ +P+ LGL + ++ P+A GGET AL RL+ + + Q +
Sbjct: 177 EGLDINAYGLPTQSQLGLGDALSLV-------PSAFPFSGGETAALARLRDYLWDSQNVR 229
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + G+ +S K SPWLA G LSPR EL++ + A
Sbjct: 230 TYKQTRNG----MIGSEYSSKFSPWLANGSLSPRRAAAELRRHESLYGA----------- 274
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ WL ELLWR+FFR ++Y A
Sbjct: 275 -NESTYWLWAELLWREFFRCTLQRYGQA 301
>gi|365092849|ref|ZP_09329929.1| DNA photolyase, FAD-binding protein [Acidovorax sp. NO-1]
gi|363415035|gb|EHL22170.1| DNA photolyase, FAD-binding protein [Acidovorax sp. NO-1]
Length = 438
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 106/338 (31%), Positives = 163/338 (48%), Gaps = 47/338 (13%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WFRNDLR+HD +L+ A + + +LPV C D + GF + G +R + ++
Sbjct: 5 LFWFRNDLRLHDQPALHAALASGATHLLPVVCLPAAD-EPTPWGFARVGVHRRAVAAAAL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE-AAMK 244
L +L A G+ L++ P T L +LA+A+GA V V D E+ E AA++
Sbjct: 64 RGLSASLSALGNPLLICQAPPVTALPQLAQAVGATTV-----VCEDIAVPYEQAEVAALR 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G++V+ W S+L H D+P+ ++P + FR+KV+ I + LP
Sbjct: 119 AAGLQVRTVWHSSLLHPADMPWPASDLPGVFTSFRQKVERAGITPAAPLPAPTRLLP--- 175
Query: 305 DVEPGDIPS--LLDLGL------------SQSAAMSQVWHGGKPAANSMKGGETEALQRL 350
P D+P+ L +G SQ + + + G PA + G E AL L
Sbjct: 176 ---PPDVPAPVLQAVGAKEGAVRIQQPAPSQGSDVRSSFPYGTPACD---GSEAAALAHL 229
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
++ A K ++G + G ++S K SPWLA G LSPR ++ +LK A
Sbjct: 230 AQYLARKLPHSYKATRNG----LTGLDYSSKFSPWLATGALSPRQIYADLKTFECDHGA- 284
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
ND G+ WL FELLWRD+FR + +Y +A
Sbjct: 285 ---ND--------GTYWLWFELLWRDYFRLLHLQYGAA 311
>gi|383449827|ref|YP_005356548.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium indicum
GPTSA100-9]
gi|380501449|emb|CCG52491.1| Deoxyribodipyrimidine photolyase PhrB3 [Flavobacterium indicum
GPTSA100-9]
Length = 437
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 156/320 (48%), Gaps = 28/320 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFRN+LR HD N E V+ +YC +P +S G+ K +RA FL+E++
Sbjct: 10 IIWFRNNLRTHDAAFWNHIQKED-EVIALYCLEPEWLKPTSFGWKKMEVFRAQFLVETLR 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL+ L + E+ + D + E + +EV+ E K+ A +
Sbjct: 69 DLQLQLSKNNISFYFFQCQAVQAFEEIYTSFPFDTIITQNEWTQEEVEVENKVRTAFPNV 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
++ Y L LPF L ++P + +R+KV+ + E + + L + D+
Sbjct: 129 SLKTDY--DQFLIEPAQLPFSLNDLPNVFTSYRKKVE--QKWAVNEVIPKANYLFKKIDL 184
Query: 307 -EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+P++ +LG S + +A KGGE+EALQ LKK+ E+Q K
Sbjct: 185 PFSSAVPTVEELGYSSLQV-------DERSAFPFKGGESEALQHLKKYIWEHQQ--IKTY 235
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
KD ++ + G +S K++PWLA G LS R+++ E++K + ND +
Sbjct: 236 KDTRNELV-GIQYSTKLAPWLANGSLSVRTVYHEVRKFEQEVLE----NDS--------T 282
Query: 426 NWLMFELLWRDFFRFITKKY 445
W++FELLWRDFF+ ++ KY
Sbjct: 283 YWVLFELLWRDFFKCVSIKY 302
>gi|388854790|emb|CCF51683.1| related to Deoxyribodipyrimidine photolyase [Ustilago hordei]
Length = 599
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/389 (29%), Positives = 185/389 (47%), Gaps = 78/389 (20%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVS----------VLPVYCFDPRDY--------- 163
R I RNDLR+HD+ L+ ++ + S VLPVY FD R
Sbjct: 3 RNILIALLRNDLRLHDHPILHLCSDPTPSNAQFQQPVTHVLPVYVFDQRHIELSGFPSLI 62
Query: 164 -------GKSSSGFDKT--------GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET 208
GK S+ F KT G +R + +S+ DL+++L++ GSDL + G PE
Sbjct: 63 KADRASGGKGSTQFAKTRQLGLWRTGVHRTKLINQSLFDLKQSLRSIGSDLSIFAGTPEA 122
Query: 209 VLVELAKAI-----GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
V+ L K I +AVY REV+ +EV +++++ + +K F G +L H D
Sbjct: 123 VVPGLIKGIRDSGDTVEAVYLGREVNTEEVDVQKRLDTLLGQLQCPIKLFEGKSLIHSTD 182
Query: 264 LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLKGLPSRGDVEPGDIPSLLDL----- 317
LPF + ++P + FR++V+ ++ R+ ++A +LK P DV D + L
Sbjct: 183 LPFPVEQLPDVFTHFRKQVERPDMFREPVQAPSKLKPFPK--DVSIPDSAGVFSLSTKKE 240
Query: 318 ---------------GLSQSAAMSQVWHGGKPAANS------MKGGETEALQRLKKFAAE 356
L+ + +S+V++ N KGGETEAL++L + A
Sbjct: 241 EEVEKHLLKPLIEQPALAHNELLSKVFNQSTGQVNVAHSAFPYKGGETEALKQLDYYFAG 300
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
+ P K+ + + GA +S K + LA G LSPR + + A+ + A+ G
Sbjct: 301 GKRSPGASYKE-TRNQMLGAGYSTKFAAALAHGLLSPRL----IAQKASELDQAT----G 351
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ + G G W++FELLWRD+F F+ K+
Sbjct: 352 TANAKGGGY-WIIFELLWRDYFYFVGCKF 379
>gi|397601068|gb|EJK57807.1| hypothetical protein THAOC_22117 [Thalassiosira oceanica]
Length = 605
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 187/387 (48%), Gaps = 72/387 (18%)
Query: 123 RRASIVWFRN-DLRVHDNESLNTANNESV--------------------SVLPVYCFDP- 160
R +I WFR DLR+HDN +L + + S+ ++LPV+ FD
Sbjct: 11 RPVNIHWFRQTDLRLHDNPALRRSVDLSLGKSKNPVVGAAVSESPPHRGNILPVFVFDTS 70
Query: 161 RDYG---KSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI 217
R YG +S G K RA F++++VSDLR NL+ RGS L++ VGKPE V+ ELAK +
Sbjct: 71 RIYGSNTRSELGSLKCSARRAQFVLQAVSDLRSNLEKRGSGLIIGVGKPEDVIAELAKGV 130
Query: 218 ------GADA-VYAHREVSHDEVKSEE----KIEAAM-KDEGIEVKYFWGSTLYHLDDLP 265
GA + EV +E+ +E+ K+ AM K + + WG T+Y + LP
Sbjct: 131 LTQSSNGAKLNIVCQEEVCSEELATEKAMRSKLARAMNKGSKFDFETVWGGTMYDPETLP 190
Query: 266 FKLG--EMPTNYGGFREKV-KGVEIRKTIEA-LDQLKGLP---------SRGDVEPGDIP 312
F G +P + FR KV K I + D+ +P S+ +P
Sbjct: 191 FDGGVNGIPDTFTPFRNKVEKACAIGNPLPVPSDEELAMPKDAHTIVKESKCHASLDYMP 250
Query: 313 SLLDLGLS----QSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 368
+L DL S + A + + PA +GGET AL R+K + + KG D
Sbjct: 251 TLADLQYSKEDIEEAELVDI-RSALPAG--YRGGETFALARVKDYI--WDRDLLKGYFD- 304
Query: 369 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 428
+ + G+++S K +PWLA+G +SPR + E ++ E+ + + W+
Sbjct: 305 TRNGMIGSDYSTKFAPWLALGNVSPRYIARECRRYE------------ETRVANKSTYWV 352
Query: 429 MFELLWRDFFRFITKKYSSAKKVVEAV 455
+FELLWRD+F+ KK+ ++ +++
Sbjct: 353 VFELLWRDYFKMFAKKHGASIFMIDGT 379
>gi|449015358|dbj|BAM78760.1| cryptochrome DASH [Cyanidioschyzon merolae strain 10D]
Length = 598
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 175/368 (47%), Gaps = 67/368 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSS----SGFDKTGPYRASFL 181
+VWFRNDLRV D+E+L TA E ++PVY FD R G + F K RA FL
Sbjct: 5 LVWFRNDLRVRDHEALLTACLEHAGRIIPVYVFDKRQVGPHARTRLGQFSKCSTPRAQFL 64
Query: 182 IESVSDLRKNLQA--RGSDLVV-RVGKPETVLVELA------KAIGADAVYAHREVSHDE 232
+E+V DL L+ RG L+V + PE V+ +L K + AVY HREV +E
Sbjct: 65 VEAVQDLANTLRTHYRGMQLLVYKNALPENVIPKLIAELSTEKQVHVGAVYYHREVCSEE 124
Query: 233 VKSEEKIEAAM-----KDE--GIEVKYFWGS-TLYHLDDLP--FKLGEMPTNYGGFREKV 282
E+ + AA+ + E + ++ GS TLYH DDLP +G MP + +R+ V
Sbjct: 125 RAVEDALRAALCALNQRGELPAVTLRALDGSSTLYHADDLPSGASVGNMPPVFTSWRKLV 184
Query: 283 -KGVEIRKTIEALD--QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHG-------- 331
KG IR + D +++ LP +P IP+ + + +++ H
Sbjct: 185 EKGARIRAPLPMPDPAKVQPLPLSLGCDP--IPTCAREVIGDNCEQARLRHRVPWTLPDD 242
Query: 332 -----GKPAANSMKGGETEALQRLKKFA------AEYQAQPPKGNKDGNHDSIYGANFSC 380
A +GGE+ A +R++ + A Y+A + + G +S
Sbjct: 243 ATSRVDPRHACPFRGGESAAQERVQAYTFGTDAIARYKA---------TRNGLLGTEYST 293
Query: 381 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
K SP+LA+G ++PR ++ L++ T G + W++FEL WRDFFRF
Sbjct: 294 KWSPYLALGNVTPRQLYAVLRRYETE----------RPEKKGISTYWVLFELEWRDFFRF 343
Query: 441 ITKKYSSA 448
+Y +A
Sbjct: 344 TAMRYGNA 351
>gi|448565168|ref|ZP_21636139.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
gi|445715827|gb|ELZ67580.1| deoxyribodipyrimidine photolyase, partial [Haloferax prahovense DSM
18310]
Length = 151
Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats.
Identities = 70/140 (50%), Positives = 92/140 (65%), Gaps = 7/140 (5%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG------FDKTGPYRAS 179
S+ WFR DLR+HDNE+L A + VLPVYC DPR+YG G FDKTG +RA
Sbjct: 6 SLAWFRRDLRLHDNEALAAACDAD-GVLPVYCLDPREYGDRPFGGSDSFDFDKTGAHRAR 64
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F +ES+SDLR +L+ RGSDLVVR G PE+VL ELA + AD V H + +E E +
Sbjct: 65 FRLESLSDLRASLRDRGSDLVVREGTPESVLPELAATVDADFVTVHTRPTPEESSVESAV 124
Query: 240 EAAMKDEGIEVKYFWGSTLY 259
E ++D+G++++ FWG LY
Sbjct: 125 ERGLRDDGVDLRRFWGCLLY 144
>gi|338996753|ref|ZP_08635463.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
gi|338766394|gb|EGP21316.1| deoxyribodipyrimidine photolyase [Halomonas sp. TD01]
Length = 473
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 157/338 (46%), Gaps = 38/338 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--KTGPYRASFLIES 184
IVW +++LR+ DN L+ + +L +Y D R + SS+G D + GP R FL +S
Sbjct: 7 IVWLQDNLRIADNPLLHF-DAPPEQLLCLYVLDQRWFEPSSAGDDTPRLGPARLRFLWQS 65
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ +LR L RGSDL+VR+G P ++++E A + A V R +H + + I +
Sbjct: 66 LMELRGELLQRGSDLLVRIGDPASIVLETADMLSAREV---RVAAHSGYEESQHIARVAE 122
Query: 245 DEGIEVKYFWGSTLYHL--DDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG--- 299
++F + Y + DDLPF L E+P N+ FR +V+ K E L
Sbjct: 123 QLPPACQFFCADSGYLIAADDLPFALSELPPNFSAFRRRVE-----KHCEFLAPQPAPIT 177
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ- 358
LP + P P L S VW GGE+ A RL+++
Sbjct: 178 LPPWPESAPRGFPP-----LKAVCEESAVWQPDNRQGFVFVGGESAASDRLQQYLWRQNG 232
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
A+ K ++G + GANFS + SPWLA GCLS R E+K N
Sbjct: 233 AESYKKTRNG----LLGANFSTRFSPWLARGCLSARQACQEVK------------NWEAV 276
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVP 456
S S W++FELLWRD+F + + EA+P
Sbjct: 277 HGSCESSYWIIFELLWRDYFHRAAQLEGAVLFGREALP 314
>gi|309779656|ref|ZP_07674415.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
gi|349616586|ref|ZP_08895723.1| DASH family cryptochrome [Ralstonia sp. 5_2_56FAA]
gi|308921597|gb|EFP67235.1| deoxyribodipyrimidine photolyase [Ralstonia sp. 5_7_47FAA]
gi|348612231|gb|EGY61853.1| DASH family cryptochrome [Ralstonia sp. 5_2_56FAA]
Length = 476
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 111/340 (32%), Positives = 168/340 (49%), Gaps = 38/340 (11%)
Query: 118 NGAAIRRA---SIVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDY-GKSSSGFDK 172
G A R A + WFR+DLR+HD +L A S ++PVYC DY ++ GF +
Sbjct: 36 QGTAWRTALNTVLFWFRSDLRLHDQPALRAACETGASHLVPVYCHA--DYEAQTPWGFAR 93
Query: 173 TGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE 232
G +R + L ++ DL + L G+ LV G P VL LA+A+GA V V D
Sbjct: 94 VGVHRRAVLAAALRDLARQLADLGTRLVECCGPPGKVLPALARAVGASTV-----VCEDI 148
Query: 233 VKSEEKIEAA-MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT- 290
E+ E A ++ G++V+ W S+L LP+ + +P + FR+ ++ I +
Sbjct: 149 AAPYEQAEVAELRSAGLQVQTVWQSSLIDPLCLPWPVQSLPAVFTTFRQALERARIAPST 208
Query: 291 -IEALDQLKGLPSRGDVEPG-DIPSLL-DLGLSQSAAMSQVWHGGKPAANSMKGGETEAL 347
+ +L PS + PG P+ + + LS + S + G P GGET L
Sbjct: 209 PLSPPTRLPPWPSGVIIPPGLRAPAYVANQTLSTDSRASFPY--GTP---EFDGGETAGL 263
Query: 348 QRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
+ L ++ + Q P K +++ G +FS K SPWLA G LSPR + EL++ S
Sbjct: 264 RHLAQY---LERQLPHTYKR-TRNALAGVDFSSKWSPWLATGALSPRRVISELQQFEQS- 318
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
G+S GS WL FELLWRD+FRF+ ++ +
Sbjct: 319 -------HGQSD----GSYWLWFELLWRDYFRFLHLQHGA 347
>gi|383142798|gb|AFG52792.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
Length = 119
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/121 (57%), Positives = 88/121 (72%), Gaps = 6/121 (4%)
Query: 68 VPTQASTLTHISLSASSTLSPSKISFKST-LSANPLQSPLSLGPHRPLDPNNGAAIRRAS 126
+PTQAST H+ ++ P+ K+ +SA P L DP+N AA+R+A+
Sbjct: 4 LPTQASTALHVPVT-----PPAASHTKAAGVSAFPDYYRLRQSGRDAGDPSNAAAMRKAA 58
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFRNDLRVHDNE+L AN E++SVLPVYCFDPRDYGKSSSGFDKTGP+RA+FL+E V+
Sbjct: 59 IVWFRNDLRVHDNEALTNANKEALSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLECVA 118
Query: 187 D 187
+
Sbjct: 119 N 119
>gi|329909778|ref|ZP_08275122.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327546398|gb|EGF31408.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 439
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 159/332 (47%), Gaps = 49/332 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I WFRNDLR+ DN + A ES ++PV+C DP D + GF++ G +R +FL +++
Sbjct: 5 IYWFRNDLRLLDNPAFLLACRESSHIVPVFCHDPSDRALTHWGFERVGDHRRAFLAATLA 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL L ARGS+L+ G+P+ VL LA++IGA + + DE + + A++
Sbjct: 65 DLAAQLAARGSELIELAGRPQDVLPALARSIGATCIVGEAIAAPDEQDAVQ----ALRTA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+ + W S+L D LPF +P + FR V+ ++ +
Sbjct: 121 GLNIDLVWQSSLLEPDALPFSTRRLPDMFTLFRTAVEKADVAPPV--------------- 165
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPA-------------ANSMKGGETEALQRLKKF 353
P D P+L+ + + W PA + GG + L L ++
Sbjct: 166 -PEDYPALIPPLPVLPSPLPHRWQDSPPALPDTDVRSSFPYQSAVCAGGTSAGLAHLHQY 224
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
A K ++G + G ++S K SPWLA G LS R +I+AA +
Sbjct: 225 LERKLAHTYKDTRNG----LMGLDYSSKFSPWLATGALSAR-----------TINAAIEQ 269
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ + G++ + + WL FELLWRD+FRF+ KY
Sbjct: 270 FEDDFGANDS-TYWLWFELLWRDYFRFLHLKY 300
>gi|361066937|gb|AEW07780.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142788|gb|AFG52782.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142789|gb|AFG52783.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142790|gb|AFG52784.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142791|gb|AFG52785.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142792|gb|AFG52786.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142793|gb|AFG52787.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142794|gb|AFG52788.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142795|gb|AFG52789.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142796|gb|AFG52790.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142797|gb|AFG52791.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142799|gb|AFG52793.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142800|gb|AFG52794.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142801|gb|AFG52795.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142803|gb|AFG52797.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142804|gb|AFG52798.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
gi|383142805|gb|AFG52799.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
Length = 119
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 87/121 (71%), Gaps = 6/121 (4%)
Query: 68 VPTQASTLTHISLSASSTLSPSKISFKST-LSANPLQSPLSLGPHRPLDPNNGAAIRRAS 126
+PTQAST + ++ P+ K+ +SA P L DP+N AA+R+A+
Sbjct: 4 LPTQASTALQVPVT-----PPAASHTKAAGVSAFPDYYRLRQSGRDAGDPSNAAAMRKAA 58
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFRNDLRVHDNE+L AN E++SVLPVYCFDPRDYGKSSSGFDKTGP+RA+FL+E V+
Sbjct: 59 IVWFRNDLRVHDNEALTNANKEALSVLPVYCFDPRDYGKSSSGFDKTGPFRATFLLECVA 118
Query: 187 D 187
+
Sbjct: 119 N 119
>gi|409124205|ref|ZP_11223600.1| DASH family cryptochrome [Gillisia sp. CBA3202]
Length = 465
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 151/325 (46%), Gaps = 29/325 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VWF+NDLR+HDNE+L A + ++ YC + + GF K R FL E
Sbjct: 2 KRGLVWFKNDLRLHDNEALCEAISNCDELIFCYCLEEILFQNLDLGFRKADINRFKFLEE 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV++L+ L+ G L++ + + + A+Y E + +E+ +E +
Sbjct: 62 SVTNLQTKLEKLGGHLLISTKSAKDFIPRIVAEHNITAIYGEMEYAPEELALTGNVEKML 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
D + ++WG TLYH+DD+PF + ++P +R V E L L +
Sbjct: 122 PD--VTFNFYWGKTLYHIDDIPFSIADIPLTSKAYRIPVSQ-ESNPRASYLSP-SYLNAD 177
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
D+ P G ++ + A ++GGE L+RL + ++ +
Sbjct: 178 ADILSTKFPPYSLYGFTREEY--------EMANTFVEGGEDNGLKRLYHYT--FETELLT 227
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA-ASKWNDGESGSSG 422
G + + S+ G ++S K SP+LA+GC+SPR ++ +K + S W
Sbjct: 228 GYRWTRNRSL-GIDYSSKFSPYLALGCISPREIYRTVKHYEKVVKKNQSTW--------- 277
Query: 423 AGSNWLMFELLWRDFFRFITKKYSS 447
W++FEL+WRD+F F K+ S
Sbjct: 278 ----WIVFELVWRDYFTFKGMKFGS 298
>gi|383142802|gb|AFG52796.1| Pinus taeda anonymous locus 0_11459_02 genomic sequence
Length = 119
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 87/121 (71%), Gaps = 6/121 (4%)
Query: 68 VPTQASTLTHISLSASSTLSPSKISFKST-LSANPLQSPLSLGPHRPLDPNNGAAIRRAS 126
+PTQAST + ++ P+ K+ +SA P L DP+N AA+R+A+
Sbjct: 4 LPTQASTALQVPVT-----PPAASHTKAAGVSAFPDYYRLRQSGRDAGDPSNAAAMRKAA 58
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFRNDLRVHDNE+L AN E++S+LPVYCFDPRDYGKSSSGFDKTGP+RA+FL+E V+
Sbjct: 59 IVWFRNDLRVHDNEALTNANKEALSILPVYCFDPRDYGKSSSGFDKTGPFRATFLLECVA 118
Query: 187 D 187
+
Sbjct: 119 N 119
>gi|388851718|emb|CCF54714.1| related to Deoxyribodipyrimidine photo-lyase [Ustilago hordei]
Length = 896
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 179/422 (42%), Gaps = 109/422 (25%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTAN--------------------NESV------SVLP 154
A R I R DLR+HDN + A+ NE++ +LP
Sbjct: 25 ADRSVLICLLRLDLRIHDNPLFHYAHQTPKPILSTVEKTVDLSKLENEALLGSTADYLLP 84
Query: 155 VYCFDPRDYGKSS---------------SGFDKTGPYRASFLIESVSDLRKNLQARGSDL 199
V+ FD R+ S GF KTG +R F+ ESV D+R L+ GSDL
Sbjct: 85 VFVFDEREMELSGLPGFQRKGPEARTKVYGFWKTGGFRTRFISESVYDVRSRLRNVGSDL 144
Query: 200 VVRVGKPETVLVELAKAIGAD-----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254
++R G PE V+ L +A AD V+ +E+++ E+ E I ++ + ++ +
Sbjct: 145 LIRFGIPEDVIYNLVQAFQADGTHVEGVWMQKEMTYPEINVENAIVEKLQGSSVPFRFVY 204
Query: 255 GSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIE-------------------A 293
G TL H DLPF E P + FR+KV+ G + + ++ A
Sbjct: 205 GKTLIHPSDLPFDSSETPDVFTPFRKKVEALGPNMVRAVKQPPAKFKPFPPVVPKTSDYA 264
Query: 294 LD-----QLKGLPSR---------GDVEPGDIPSLL-----DLGLSQSAAMSQVWHGGKP 334
LD + GL R G+V DI L D L + S + P
Sbjct: 265 LDVSYEVDVDGLAPRASETKAKQEGEVSFHDILRFLLAPLNDSQLPPTLEASALLQQRHP 324
Query: 335 A-ANSMKGGETEALQRLKKFAAEYQAQ----------PPKGNKDGNHDSIYGANFSCKIS 383
A A ++GGE+ AL RL + ++ PP +++ G +S K+S
Sbjct: 325 ASAFPLRGGESSALDRLDWYFVRGKSADSSRWGKADPPPVARYKQTRNNLIGHAYSSKMS 384
Query: 384 PWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITK 443
P+LA G +SPR +++ L T GE + W+ FELLWRD+F F+ +
Sbjct: 385 PFLAYGSISPRQIWEALDDHETKF--------GED----QNTYWVRFELLWRDYFFFVAE 432
Query: 444 KY 445
K+
Sbjct: 433 KF 434
>gi|237654599|ref|YP_002890913.1| cryptochrome, DASH family [Thauera sp. MZ1T]
gi|237625846|gb|ACR02536.1| cryptochrome, DASH family [Thauera sp. MZ1T]
Length = 515
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 163/356 (45%), Gaps = 61/356 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I WFRNDLRV DN +L A + +LPVYC DP + GF + GP+R +FL ++
Sbjct: 7 IFWFRNDLRVGDNLALVEACASAGRLLPVYCHDPSADAPTRWGFVRRGPHRRAFLEAALG 66
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL L+ARGS L+ G P VL LA+A+GA V + +E E+++ AA++
Sbjct: 67 DLDAALRARGSALLQLNGAPRAVLPALAEAVGAAVVVCEAIAAPEE---EDEL-AALRAA 122
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV--------------------- 285
G++VK W STL LPF +P + FR+ V+
Sbjct: 123 GLKVKAIWQSTLLDPAALPFAAARLPKVFTAFRQAVESAGLQPPAPLPAPRTLPPWPPLD 182
Query: 286 -EIRKTIEALDQLKGL--------------PSRGDVEPGDIPSLLDLGLSQSAAMSQVWH 330
R++ + D G P EPG+ G S AA +
Sbjct: 183 RPTRRSDASRDLRAGRSPGVAGRDPCAGRSPGVERAEPGNRDLRRSYGGSCGAADALTVE 242
Query: 331 GGKPAA-----NSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPW 385
G+ A+ + GGE AL L ++ A + + K ++G + G +FS K SPW
Sbjct: 243 IGEQASFPWWQPAFAGGERAALAHLARYFAGDRPRHYKATRNG----LSGVDFSSKFSPW 298
Query: 386 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFI 441
LA G LS R L++ ++ E G S GS WL FELLWRD+FR +
Sbjct: 299 LAQGALSARVALAALRR-----------HEIEQGPSD-GSYWLWFELLWRDYFRLL 342
>gi|351729487|ref|ZP_08947178.1| DNA photolyase, FAD-binding protein [Acidovorax radicis N35]
Length = 440
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 109/335 (32%), Positives = 159/335 (47%), Gaps = 39/335 (11%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WFRNDLR+HD +L A + +LPV C P D + GF + GP+R +F+ ++
Sbjct: 5 VFWFRNDLRLHDQPALQAALTGGATHLLPVVCQPPAD-EVTPWGFARVGPHRQAFVAAAL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE-AAMK 244
DL + A G+ L V P T L LA+A+GA V V D E+ E AA++
Sbjct: 64 RDLGARMAALGNPLQVCHAAPATALPALARAVGAATV-----VCEDIAAPYEQAEVAALR 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI---RKTIEALDQLKGLP 301
G++V W S+L D+P+ + E+P + FR+ V+ +I + L
Sbjct: 119 AAGLQVHTVWHSSLLQPADMPWPVAELPAVFTPFRQAVERADIAPPAPLPPPVSLLPPPL 178
Query: 302 SRGDVEP--GDIPSLLDLGLSQSAAMSQVWHGGKPAAN------SMKGGETEALQRLKKF 353
DV G +P+ + Q AA + G P ++ + G ET AL L ++
Sbjct: 179 VSSDVWEALGAMPAWAE----QGAAATDNLAGRDPRSSFPYGTPACDGSETLALAHLVQY 234
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
A A K ++G + G ++S K SPWLA G LSPR + +LK A
Sbjct: 235 LARKLAHSYKATRNG----LTGLDYSSKFSPWLATGALSPRKIHADLKTFERDHGA---- 286
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
ND G WL FELLWRD+FR + +Y A
Sbjct: 287 ND--------GIYWLWFELLWRDYFRLLHLQYGMA 313
>gi|261856009|ref|YP_003263292.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
gi|261836478|gb|ACX96245.1| cryptochrome, DASH family [Halothiobacillus neapolitanus c2]
Length = 447
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 151/322 (46%), Gaps = 19/322 (5%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR DLR+ DN A +++ ++LPVY DP + GFD+ GP+R L +++
Sbjct: 5 LYWFRQDLRLRDNRCFIRACDQADALLPVYILDPAMEQPTRWGFDRIGPHRRVVLGQALR 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L + L+ RGS L + G+P L+ + + D V+ + E + ++ +++
Sbjct: 65 GLDRQLRQRGSGLCLLQGQPVDQLLAMVRQGAIDTVWVEDIAAPQERALVDALKQSLEPL 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIEALDQLKGLPSRG 304
G+ V W S+L DDLPF + +P ++ FR++V+ V I A D + P
Sbjct: 125 GVSVYTGWQSSLIAPDDLPFAIDRLPDSFTPFRKRVEQAAVCIEHPYPAPDAVPPWPESV 184
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN-SMKGGETEALQRLKKFAAEYQAQPPK 363
I + D S + P + E A + L ++ A K
Sbjct: 185 PYPTASIDAQFDALCGASTRPAVDARSAFPCDDPDCSVDEIGAQRHLDQYFARGLPHTYK 244
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
+ + + G ++S K SP+LA+G LS R ++ A++ + ++ +
Sbjct: 245 ATR----NQLIGKDYSSKWSPFLALGVLSARQVY------------AARQHFEQARGANE 288
Query: 424 GSNWLMFELLWRDFFRFITKKY 445
G+ WL FELLWRD+FRF+ KY
Sbjct: 289 GTYWLRFELLWRDYFRFLHLKY 310
>gi|407939958|ref|YP_006855599.1| DNA photolyase, FAD-binding protein [Acidovorax sp. KKS102]
gi|407897752|gb|AFU46961.1| DNA photolyase, FAD-binding protein [Acidovorax sp. KKS102]
Length = 438
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 166/351 (47%), Gaps = 51/351 (14%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WFR+DLR+HD +L A + + +LPV C D + GF + +R +F ++
Sbjct: 5 LFWFRSDLRLHDQPALRAALTSGATHLLPVVCLPAPD-ESTPWGFARVCAHRRAFTAAAL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE-AAMK 244
L + ++A G+ L++ P T L++LAKA+GA V V D E+ + AA++
Sbjct: 64 RGLHQRMRALGNPLLICQAPPATALLQLAKAVGATTV-----VCEDIAAPYEQAQVAALR 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G++V+ W S+L +P+ + ++P + FR+KV+ I + +
Sbjct: 119 AAGLQVRTVWQSSLLPPSRMPWPVDQLPGVFTSFRQKVERAGITPAVPLPAPAR------ 172
Query: 305 DVEPGDIP--SLLDLGLSQSAAMSQV------------WHGGKPAANSMKGGETEALQRL 350
+ P D+P L +G Q A Q+ + G P + G E AL L
Sbjct: 173 LLPPPDVPVSVLQAVGAEQGAEAIQLPAPPQGSDARSSFPYGTPGCD---GSEVAALGHL 229
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
++ A + P KD + + G ++S K SPWLA G LSPR + +LK A
Sbjct: 230 AQYLAR---KLPHSYKD-TRNGLTGLDYSSKFSPWLATGALSPRQIDADLKAFERDHGA- 284
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS----AKKVVEAVPA 457
ND G+ WL FELLWRD+FR + +Y + A+ + E PA
Sbjct: 285 ---ND--------GTYWLWFELLWRDYFRLLHLQYGAVLYRARGLSELPPA 324
>gi|71005224|ref|XP_757278.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
gi|46096457|gb|EAK81690.1| hypothetical protein UM01131.1 [Ustilago maydis 521]
Length = 881
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 178/420 (42%), Gaps = 109/420 (25%)
Query: 123 RRASIVWFRNDLRVHDNE--------------------SLNTANNESV------SVLPVY 156
R I R DLR+HDN L+ +E++ +LPV+
Sbjct: 26 RSVLICLLRLDLRIHDNPLFYYAHQTHKPIVTTAEKTVDLSKLEDEALLGSTADYLLPVF 85
Query: 157 CFDPRDYGKSS---------------SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
FD R+ S GF KTG +R F+ ESV D+R L++ GSDL +
Sbjct: 86 VFDEREVELSGLPGYQRKGPEARTKEYGFWKTGGFRTRFVSESVYDVRSRLRSVGSDLFI 145
Query: 202 RVGKPETVLVELAKAIGA-----DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256
R G PE V+ L KA A + V+ +E+++ E+ E I ++ G+ V++ G
Sbjct: 146 RFGIPEDVISNLVKAFQAEGTHVEGVWLQKEMTYPEINVENAIVEKLRGSGVPVQFVNGK 205
Query: 257 TLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRKTIE-------------------ALD 295
TL H DLPF+ E P + FR+KV+ G + + ++ ALD
Sbjct: 206 TLIHPADLPFESSETPDVFTPFRKKVEALGASMVRPVKHPPAKFKSFPPGVPSTPDYALD 265
Query: 296 -----QLKGLPSR---------GDVEPGDIPSLL-----DLGLSQSAAMSQVWHGGKPA- 335
+ GL R G V DI L D L + S + PA
Sbjct: 266 VSYEVDVDGLAPRALETKDKQEGQVSFHDILRFLLTPLNDSQLPPTLEASALLQQRHPAS 325
Query: 336 ANSMKGGETEALQRLKKFAAEYQAQ----------PPKGNKDGNHDSIYGANFSCKISPW 385
A ++GGE+ AL+RL + ++ PP +++ G +S K+SP+
Sbjct: 326 AFPLRGGESSALERLDWYFVRGKSADSSRWGKSDPPPVARYKQTRNNLIGHAYSTKMSPF 385
Query: 386 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
LA G +SPR +++ L GE + W+ FELLWRD+F F+ +K+
Sbjct: 386 LAYGSVSPRQIWEALDDHERKF--------GED----QNTYWVRFELLWRDYFFFVAEKF 433
>gi|443895299|dbj|GAC72645.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 876
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 159/365 (43%), Gaps = 83/365 (22%)
Query: 152 VLPVYCFDPRDYGKSS---------------SGFDKTGPYRASFLIESVSDLRKNLQARG 196
+LPV+ FD R+ S GF KTG +R F+ ESV D+R L+A G
Sbjct: 84 LLPVFVFDEREMELSGLPGYNRKGPEARTKEYGFWKTGGFRTRFISESVYDVRSRLRAAG 143
Query: 197 SDLVVRVGKPETVLVELAKAIGAD-----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251
SDL++R G PE V+ L A AD V+ +E+++ E+ E I ++ G+ V+
Sbjct: 144 SDLLIRFGIPEDVIANLVSAFQADGTHVEGVWLQKEMTYPEIDVENAIVEKLQGTGVPVQ 203
Query: 252 YFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE---------------------IRKT 290
+ G TL H DLPF+ E P + FR+KV+ + R T
Sbjct: 204 FVNGKTLIHPADLPFESSETPDVFTPFRKKVEALGPNMVRPVKPSPAKFKSFPPRVPRTT 263
Query: 291 IEALD-----QLKGLPSR---------GDVEPGDIPSLL-----DLGLSQSAAMSQVWHG 331
ALD + GL R G V DI L D L + S +
Sbjct: 264 DYALDVSYEVDVDGLAPRALEPKDKQEGQVSFHDILRFLLTPLNDSQLPPTLEASALLQQ 323
Query: 332 GKPA-ANSMKGGETEALQRLKKFAAEYQAQ----------PPKGNKDGNHDSIYGANFSC 380
PA A ++GGE+ AL RL + ++ PP +++ G +S
Sbjct: 324 RHPASAFPLRGGESSALDRLDWYFVRGKSADSTRWGKADPPPVARYKQTRNNLIGHAYST 383
Query: 381 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
K+SP+LA G +SPR +++ L GE + W+ FELLWRD+F F
Sbjct: 384 KMSPFLAYGSISPRQIWEALDDHEKKF--------GED----QNTYWVRFELLWRDYFFF 431
Query: 441 ITKKY 445
+ +K+
Sbjct: 432 VAEKF 436
>gi|119713707|gb|ABL97757.1| deoxyribodipyrimidine photolyase [uncultured marine bacterium
EB0_41B09]
Length = 424
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 155/329 (47%), Gaps = 33/329 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFRNDLRV DN SLN A S +L VY D + + + GF + GP+R +L + +
Sbjct: 3 SIYWFRNDLRVIDNLSLNEAIESSDEILFVYMQDVQSFKDTEWGFSRMGPHRKLYLSQGL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L++ L G L + L++L + D +Y SH+E+ E + ++
Sbjct: 63 NALQEKLSNYGHSLNYYLDDTVDGLLKLVEKFHIDRIYCESIDSHEELDQEIR----LRG 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL--DQLKGLPSR 303
+++ ++ S L+ D +PF L ++P + FR++++ E++ +L ++ + S
Sbjct: 119 HKVDLYSYYQSGLFLNDQIPFNLNDLPDVFTKFRKEIESREVKPIKPSLINQRINAIKSI 178
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
D E +I + MS + + GGE + L+ A + + P
Sbjct: 179 VDEESNEI---------EMEQMSYPKSSFPISEDRFFGGEEKGFTFLE---AYFSSNKPS 226
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
K + + G +FS K SPWLA G +S R ++D L ++
Sbjct: 227 TYKK-TRNELMGIDFSTKFSPWLASGYISARQVYDFLLSYELNV------------IKNE 273
Query: 424 GSNWLMFELLWRDFFRFITKKYSSAKKVV 452
+ W+ FELLWR++FR I KKY KK+
Sbjct: 274 STYWIFFELLWREYFRLIFKKY--GKKIF 300
>gi|443474143|ref|ZP_21064164.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
gi|442905078|gb|ELS29993.1| Cryptochrome [Pseudomonas pseudoalcaligenes KF707]
Length = 472
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 166/338 (49%), Gaps = 29/338 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +++W + DLR+ D+ +L+ A ++ +LP++ DP+ S G + G +RA FL+E
Sbjct: 2 RRALLWLKQDLRLDDHPALHAAI-QADRLLPLFVLDPQWLRPSPLGPRRLGVHRARFLLE 60
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L L+ GS L+V G E V+ L + + D V EV+ E+ ++ A+
Sbjct: 61 SLAALDAGLRQHGSRLLVVQGDAERVIPSLVERLDLDEVLTLEEVAPFELDEMRRVRHAL 120
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPS 302
G+ + + G++L+ ++LP L +P+ + FR+ V+ V + + L LP+
Sbjct: 121 ---GVPLTEWPGNSLFREEELPVPLQALPSVFNRFRDLVEARVHVFQPNPTPHALPPLPT 177
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPA-ANSMKGGETEALQRLKKFAAEYQAQP 361
+PSL LGL + G PA A GGE AL RL+ + E ++
Sbjct: 178 GAAALLTPLPSLSRLGLGEPL--------GVPATAFPFSGGEPAALARLRDYLWESRS-- 227
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ D + G+ +S K+SPWLA G LSPR + EL + + G S+
Sbjct: 228 -IRDYRIRSDGMIGSEYSSKLSPWLANGSLSPRRVAAELHRLES--------QHGRDDST 278
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATA 459
L +LLWR++FR+ ++ A + + ATA
Sbjct: 279 QQ----LWHQLLWREYFRWTMRRLGDALFRADGLKATA 312
>gi|352105175|ref|ZP_08960731.1| deoxyribodipyrimidine photolyase [Halomonas sp. HAL1]
gi|350598555|gb|EHA14670.1| deoxyribodipyrimidine photolyase [Halomonas sp. HAL1]
Length = 481
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 159/343 (46%), Gaps = 42/343 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFD-----PRDYGKSSSGFDKTGPYRASFL 181
IVW ++DLR+ DN + S +L ++ D P G+S+ + GP R FL
Sbjct: 7 IVWLQDDLRIADNPLFHFTARPSY-LLCLFVVDEQWLAPLIEGESTP---RIGPARLRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+S+ +LR L RGSDL+VR+GKP V++ELA ++ A V R H V I+A
Sbjct: 63 WQSLMELRGELLQRGSDLLVRIGKPSNVVIELAASLNARQV---RVAEHPGVDENTHIQA 119
Query: 242 AMKDEGIE--VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-EALDQLK 298
++ E V L+ LPF+ +P ++ FR + VE T+ E+
Sbjct: 120 VVESLPSETTVTCMESGRLFERHALPFEQAALPNSFSAFR---RSVEQACTVPESRCAPV 176
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
LP + G P L S W +GGE+ A RL + Q
Sbjct: 177 TLPPWPEAPRGFPP------LKAVCEQSATWQPDSRQGYVYRGGESAAHTRLNDYIWRQQ 230
Query: 359 -AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
A+ K ++G + GANFS ++SPWLA GCLS R ++ AA K + E
Sbjct: 231 GAETYKETRNG----LLGANFSTRVSPWLARGCLSARQVY-----------AAVKAWEAE 275
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATAC 460
GS+ + S W+ FELLWR++F + + AK PA C
Sbjct: 276 HGSTES-SYWITFELLWREYFIRVA-ELEGAKMFGSRQPAKLC 316
>gi|47223394|emb|CAG04255.1| unnamed protein product [Tetraodon nigroviridis]
Length = 726
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 105/177 (59%), Gaps = 6/177 (3%)
Query: 145 ANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203
A + ++P+YCFDPR Y G KTGP+R FL+ES+ DLRK L +GS+L+VR
Sbjct: 547 AQRNAEHIVPLYCFDPRHYAGTYHYSLPKTGPFRLRFLLESIRDLRKTLLNQGSNLIVRR 606
Query: 204 GKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262
GKPE V+ L K +G+ + A EV+ +E+ E++++ ++V WGSTLYH D
Sbjct: 607 GKPEEVVASLIKQLGSVSTVAFQEEVTSEELNVEKRVKDVCAQLKVKVHTCWGSTLYHRD 666
Query: 263 DLPF-KLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDL 317
DLPF + +P Y FR+ V+ +R + + ++LK LP +E G IP+ DL
Sbjct: 667 DLPFHHISRLPDVYTQFRKAVESQSRVRPVLPSPERLKPLPQ--GLEEGAIPTAEDL 721
>gi|254468682|ref|ZP_05082088.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
proteobacterium KB13]
gi|207087492|gb|EDZ64775.1| deoxyribodipyrimidine photolyase (photoreactivation) [beta
proteobacterium KB13]
Length = 416
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 149/321 (46%), Gaps = 38/321 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFRN+LR+HDN L +S S+ VY + + D ++ FLI+++
Sbjct: 4 NIFWFRNNLRIHDNYPLVQCIKDSTSISFVYIVN-----RHLRVLDGHENHKNKFLIDAL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L+ NL G +L + G+P + LAK + +Y + VS E E I
Sbjct: 59 NQLKINLSDLGHELYIIEGEPSDIFSSLAKQYQINKIYCEKIVSPYETDEELSITQT--- 115
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+V FW STL ++DDL F + ++P + FR+KV E++ L + LP
Sbjct: 116 ---DVLSFWDSTLLNIDDLDFDVIDLPDTFTTFRKKV---ELKPITATLYEGLTLP---- 165
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+P ++ ++ Q + G N E A + +K + ++ +A K
Sbjct: 166 -KPANLS---NINSYQLPNFDIKYRGSVDFLNHYTICENGAQKYVKDYFSDKKALEYKQT 221
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
++ + G +FS K S WLA G +S R +F LK N ES + +
Sbjct: 222 RN----ELMGNDFSTKFSVWLAHGLISARQIFTSLK------------NYEESNGANEST 265
Query: 426 NWLMFELLWRDFFRFITKKYS 446
W++FELLWRD+FR + KY+
Sbjct: 266 YWILFELLWRDYFRLLHFKYN 286
>gi|409195416|ref|ZP_11224079.1| DASH family cryptochrome [Marinilabilia salmonicolor JCM 21150]
Length = 433
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 145/330 (43%), Gaps = 50/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLIES 184
I WFRNDLR+HDN +L A +E V+P++ D + S F +TG +R FL ES
Sbjct: 14 IYWFRNDLRIHDNPALTMALSEGNPVIPIFIADNIWFETSHPELNFPRTGLFRKQFLAES 73
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DL K L+ L + G +L +L + + A RE++ +E E+++ +
Sbjct: 74 LADLDKTLKKFDRTLYIFKGDTAKILKKLVAHTKSSKIVAQREIADEEATIEQRVS---R 130
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI---------RKTIEALD 295
D +E+ WGS LY D + F + + P Y F+ KV +K ++ L
Sbjct: 131 DMHLELH--WGSMLYQPDQIDFPVEKSPFYYTRFKNKVLSQAFTPSPMHSPAKKELQLLS 188
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
++ P + P + W K GGET ALQR++
Sbjct: 189 KISLPPDLTKLNPDE------------------WLISKKGT-FFHGGETNALQRME---- 225
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
EY + + G NFS ++PWLA G LSPR + L+K S
Sbjct: 226 EYFNSGGAAHYSETRNQFEGTNFSSFLAPWLANGSLSPRIFYQHLQKAKKGHS------- 278
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ N L +L+WRD FRF+ +Y
Sbjct: 279 ----ENAESFNTLTEQLIWRDNFRFLFLRY 304
>gi|395760275|ref|ZP_10440944.1| cryptochrome, dash family protein [Janthinobacterium lividum PAMC
25724]
Length = 444
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 153/336 (45%), Gaps = 49/336 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--KTGPYRASFLIES 184
I WFRNDLR+ DN +L A + +L VYC ++ +D +T P+R FL
Sbjct: 14 IYWFRNDLRLDDNPALRQACQRAGHLLFVYCHRS---ASVATRWDVPRTSPHRQHFLRSG 70
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DL L + GS L+ G P VL+ LA +IGA ++ E++ E + E AA++
Sbjct: 71 LADLATQLASYGSQLLEVEGDPAHVLLALAHSIGATTIHC-EEIAAPEEQGE---LAALR 126
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G+ V+ W S+L LPF +P + FR V+ ++ +P+
Sbjct: 127 AAGLTVEALWQSSLLDPAALPFPCAALPEVFTNFRTLVERQQV------------VPTAP 174
Query: 305 DVEPGDIPSL------------LDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
P IP L Q A ++ A + GG T A + L++
Sbjct: 175 LARPTTIPPLPPAFAALAETWAAAPDALQDAHLATARSSFPYALPAFYGGPTAAAEHLRQ 234
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A A K +++G + G ++S K SPWLA G LS R + L++ + A
Sbjct: 235 YFAGELAHTYKLSRNG----LTGVDYSTKFSPWLACGALSARMVCAALRQFEAAHGA--- 287
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
A + W+ FEL+WRD+FRF+ ++ A
Sbjct: 288 ---------NASTYWIWFELMWRDYFRFLHLQHGVA 314
>gi|359785167|ref|ZP_09288322.1| deoxyribodipyrimidine photolyase [Halomonas sp. GFAJ-1]
gi|359297465|gb|EHK61698.1| deoxyribodipyrimidine photolyase [Halomonas sp. GFAJ-1]
Length = 483
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 152/321 (47%), Gaps = 41/321 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG--FDKTGPYRASFLIES 184
IVW +++LRV DN L ++ +L +Y D +G + GP R FL +S
Sbjct: 7 IVWLQDNLRVADNPLLQF-DSPPEQLLCLYVLDQNWLQPCVAGEPTPRLGPARLRFLWQS 65
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVY--AH---REVSHDEVKSEEKI 239
+ +LR L RGSDL+VR+G P V+V+LA ++ A V AH EV+H K +++
Sbjct: 66 LMELRGELLQRGSDLLVRIGDPAEVVVQLATSLNARQVRTAAHSGSEEVAHI-AKVSQQL 124
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLK 298
A+++ ++ Y L D LPF +P N+ FR V K I + A
Sbjct: 125 PASIQLACVDSGY-----LISADTLPFAAELLPANFSAFRRSVEKQCVIAPPMHA---PV 176
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
LPS D G P L S W + GGE A+ RLK + + +
Sbjct: 177 TLPSWPDAPRGFPP------LKSVCQDSDAWQPDDRQGFTFIGGEAAAVDRLKNYLWQQK 230
Query: 359 -AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
+ K ++G + GA+FS ++SPWLA GCLS R + E+K W E
Sbjct: 231 GGESYKKTRNG----LLGASFSTRLSPWLARGCLSARQVHQEVK----------AWE--E 274
Query: 418 SGSSGAGSNWLMFELLWRDFF 438
S S W++FELLWRD+F
Sbjct: 275 VNGSTESSYWIIFELLWRDYF 295
>gi|221068159|ref|ZP_03544264.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
gi|220713182|gb|EED68550.1| cryptochrome, DASH family [Comamonas testosteroni KF-1]
Length = 431
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 162/330 (49%), Gaps = 38/330 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++W RNDLR+HD L+ A +LPV C P ++ GF + GP+R ++L ++
Sbjct: 5 LLWLRNDLRLHDQPVLHAACRMGAQYILPVLCL-PDIQARTHWGFARIGPHRRAWLANTI 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA-AMK 244
+L ++ S L++ L LA+A+GA + V D +E+ E A++
Sbjct: 64 QNLAQSFHELRSQLLILDAPAAVALPALAQALGAGII-----VCEDIAAPDEQAEVQALR 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G++V W S+L H D LP+ + ++P + FR+ V+ ++ + L L+ LP
Sbjct: 119 AAGLQVHTVWHSSLLHPDQLPWPMRQLPDIFTPFRQAVEHAKL-QPYPPLPVLEALPR-- 175
Query: 305 DVEPGDIPS------LLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
P +IPS +L L +A+ S + A ++GGE+ AL L+++ A
Sbjct: 176 --VPPNIPSKYRQEQVLALDAFANASNSL---DARSAIALLQGGESAALAHLRQYLARGL 230
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G ++S K S WLA G LSPR + EL++ + A
Sbjct: 231 PHSYKRTRNG----LVGLDYSSKWSLWLATGALSPRQAYAELRQFEATRGATES------ 280
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
S WL FELLWRD+FRF+ ++ A
Sbjct: 281 ------SYWLWFELLWRDYFRFLHMQHGRA 304
>gi|253998728|ref|YP_003050791.1| DASH family cryptochrome [Methylovorus glucosetrophus SIP3-4]
gi|253985407|gb|ACT50264.1| cryptochrome, DASH family [Methylovorus glucosetrophus SIP3-4]
Length = 454
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/332 (30%), Positives = 162/332 (48%), Gaps = 37/332 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS----VLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
I WFR DLR+HD +L A + +LPV+ DP + G + GF + P+R ++L
Sbjct: 16 IFWFRRDLRLHDQFALAAAIQHAQQQGGWLLPVFVHDPAESGLTRWGFARMSPHRRAWLA 75
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS--EEKIE 240
+V L L+A GSDLV G LV L +A+G + DE+ + E+ +
Sbjct: 76 SAVDALAGQLRALGSDLVPLHGDSVDTLVRLVRALGNPLLVC------DEIAAPEEQAVV 129
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR--KTIEALDQLK 298
AA+ G+ V+ W S+L ++LPF +P + FR ++ ++ + + ++ QL
Sbjct: 130 AALLAAGVSVQTIWQSSLVAAENLPFDPQAVPDTFTTFRHALERAHVQAARPLPSIKQLP 189
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVW-HGGKPA----ANSMKGGETEALQRLKKF 353
LPS + IPS + + A + W + + A ++ G E ALQ L+++
Sbjct: 190 PLPSHALLNA--IPSEVASDGTDHAMACEPWPYDARSAFPLGSSGFDGSEQAALQHLQQY 247
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
K ++G + G ++S K SPWLA G LS R + AA +
Sbjct: 248 CQRRLPHSYKSTRNG----LIGVDYSSKWSPWLATGALSARQAW-----------AAIQA 292
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ E G++ + S WL FELLWRD FR++ K+
Sbjct: 293 FEAEHGANES-SYWLWFELLWRDHFRWLHFKH 323
>gi|393238519|gb|EJD46055.1| cryptochrome [Auricularia delicata TFB-10046 SS5]
Length = 469
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 157/356 (44%), Gaps = 63/356 (17%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY------GKSSS-------- 168
R I FRNDLR+HDN L A N + +LP+YCFDPR GK+
Sbjct: 3 RTIRIALFRNDLRIHDNPMLQAALNGADELLPLYCFDPRQVDLTALNGKTEELISGGPFD 62
Query: 169 -------GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI---- 217
G + ++ FL+ESV DL+ +L+ S+L+VR G P+ ++ +L + +
Sbjct: 63 AARTWHLGLPRNQKFKLKFLVESVLDLQHDLRRLKSELLVRFGAPDQIIDKLVEHLRQGA 122
Query: 218 --GADAVYAHREVSHDEVKSEE---KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMP 272
G ++ RE + +E + EE K + D GST+ H DLPF + P
Sbjct: 123 PDGNVELFCQREQTFEETRVEEALKKFNLTLTDG--------GSTMVHPGDLPFAPKDCP 174
Query: 273 TNYGGFREKVKG----VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQV 328
+ FR+KV+G V +R + D PS+L A+
Sbjct: 175 AVFTSFRKKVEGLRPMVRDLLPTPTSLPPLPSGARDFMLSHDAPSILRSIADLDASFD-- 232
Query: 329 WHGGKPAANSMKGGETEALQRLKKFAAEYQAQP-PKGNKDGNHDSIYGANFSCKISPWLA 387
+ + GG + ++RLK Y + P P +++ G + S SP+L+
Sbjct: 233 ----PRSTTAYCGGASSGIERLK----HYCSPPGPLFTYKKTRNALSGRDGSSHFSPFLS 284
Query: 388 MGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITK 443
+G LS R +F ++ D G S WL+FELLWRD+++F+ +
Sbjct: 285 VGALSARQIFWAVRDA----------EDTRDGGGNEDSYWLIFELLWRDYWKFLAR 330
>gi|118594165|ref|ZP_01551512.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
HTCC2181]
gi|118439943|gb|EAV46570.1| deoxyribodipyrimidine photolyase [Methylophilales bacterium
HTCC2181]
Length = 426
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 160/333 (48%), Gaps = 53/333 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFRNDLR+ DN +LN+A N S +L V+ D + + F + G +R F+ + +
Sbjct: 3 SIYWFRNDLRLEDNAALNSALNNSDHILFVHIDDDMNDAECEWQFSRRGQHRKIFMYQGL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L+ NL++ G L VGK + EL ++VY ++ E +++E++ +K+
Sbjct: 63 EELQLNLKSYGHHLNRFVGKTNLIFQELINRHHINSVYC-ESINAFEEQAQERL---IKE 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GV----------EIRKTIEA 293
G+ + ++ S++Y LPF + ++P + FR+ ++ G+ +I+ TI
Sbjct: 119 LGVNLYSYYQSSMYMPHQLPFDIKDLPDVFTHFRKNIETTGIVPEEPIALSGQIKNTIPI 178
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN-SMKGGETEALQRLKK 352
LD L L SQS+ P ++ KGGE A + +
Sbjct: 179 LDSKTNLTQE-----------LTEDYSQSSF---------PISDKKFKGGERTAQLHIDQ 218
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ +Q+ P K + +++ G S K SPWL++G +S ++ LK+
Sbjct: 219 Y---FQSDYPNSYK-YSRNNLMGIECSTKFSPWLSLGFISANQIYSALKRYE-------- 266
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ S+ + W+ FELLWRD+FRF+ KY
Sbjct: 267 ----QRNSANDSTYWIYFELLWRDYFRFLFMKY 295
>gi|343427008|emb|CBQ70536.1| related to Deoxyribodipyrimidine photo-lyase [Sporisorium reilianum
SRZ2]
Length = 881
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 111/420 (26%), Positives = 170/420 (40%), Gaps = 109/420 (25%)
Query: 123 RRASIVWFRNDLRVHDNE--------------------SLNTANNESV------SVLPVY 156
R I R DLR+HDN L+ +E++ +LPV+
Sbjct: 26 RSVLICLLRLDLRIHDNPLFYYAHQTPKPIVSTAEKTVDLSKLEDEALLGSTADYLLPVF 85
Query: 157 CFDPRDYGKSS---------------SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV 201
FD R+ S GF KTG +R F+ ESV D+R L++ GSDL++
Sbjct: 86 VFDEREMELSGLPGYQRKGPEARTKEYGFWKTGGFRTRFISESVYDVRPRLRSVGSDLLI 145
Query: 202 RVGKPETVLVELAKAIGA-----DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256
R G PE V+ L A A + V+ +E+++ E+ E I + G+ V++ G
Sbjct: 146 RFGTPEEVISNLVHAFQAQGTHVEGVWMQKEMTYPEIDVENAIVEKLHGSGVPVQFVHGK 205
Query: 257 TLYHLDDLPFKLGEMPTNYGGFREKVKGVE---IRKTIEALDQLKGLP------------ 301
TL H DLPF+ E P + FR+KV+ + +R + + K P
Sbjct: 206 TLIHPADLPFESSETPDVFTPFRKKVEALGPKMVRPVKHSPSKFKSFPPVVPSTPDYALD 265
Query: 302 --------------------SRGDVEPGDIPSLL-----DLGLSQSAAMSQVWHGGKPA- 335
G V DI L D L + S + PA
Sbjct: 266 VSYEVDVDGLAPRALETKDKQEGQVSFHDILHFLLTPLNDSQLPPTLEASALLQQRHPAS 325
Query: 336 ANSMKGGETEALQRLKKFAAEYQAQ----------PPKGNKDGNHDSIYGANFSCKISPW 385
A ++GGE+ AL RL + ++ PP +++ G +S K+ P+
Sbjct: 326 AFPLRGGESSALDRLDWYFVRGKSADSSRWGKADPPPVARYKQTRNNLIGHAYSTKMPPF 385
Query: 386 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
LA G +SPR +++ L GE + W+ FELLWRD+F F+ +K+
Sbjct: 386 LAYGSISPRQIWEALDDHEKKF--------GED----QNTYWVRFELLWRDYFFFVAEKF 433
>gi|269961334|ref|ZP_06175699.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833885|gb|EEZ87979.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 462
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 157/324 (48%), Gaps = 46/324 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRASFLIES 184
+ WF NDLR+HDN L A+ E ++ +YC+ P+ Y K + + G + FL ES
Sbjct: 19 LYWFTNDLRLHDNPLLLRASAEVDLLICIYCY-PKVSSYLKQYAQEPEFGFAKQQFLDES 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L +L A L V P + A +G +YA DE + I+A
Sbjct: 78 LHCLNLSLNALNQRLQVVDLHPYQAIKHAADKLGVTHLYADAVAGSDEQDVVDNIQAEAP 137
Query: 245 DEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ EV+ +L+ ++DLPF+L +P + FR+KV+ + + + +EA+ +L LP
Sbjct: 138 HLAVIQSEVR-----SLFCVEDLPFELEALPDTFTKFRKKVEKLALAEPVEAVTRLPALP 192
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
D +L L L++ +P+ GGE L+ +++ A A
Sbjct: 193 --------DGLALPTLSLTRDV---------QPSL--FTGGERAGLEHCRQYFASTLASE 233
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA GCLSP++++ LK+ AA+ ND
Sbjct: 234 YKQTRNG----LDGMDYSTKFSPWLAHGCLSPKTIYAMLKR----YEAANGAND------ 279
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + ++Y
Sbjct: 280 --STYWIYFELLWREYFYWYARRY 301
>gi|264678127|ref|YP_003278034.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
gi|262208640|gb|ACY32738.1| DNA photolyase, FAD-binding protein [Comamonas testosteroni CNB-2]
Length = 473
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 38/330 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++W RNDLR+HD L+ A +LPV C P ++ GF + G +R ++L +++
Sbjct: 47 LLWLRNDLRLHDQPVLHAACRMGAQYLLPVLCL-PDIQARTRWGFARIGQHRRTWLTKTI 105
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA-AMK 244
+L +N S L++ L LA+A+GAD + V D +E+ E A++
Sbjct: 106 QNLAENFHELRSQLLILNAPAAKALPALAQALGADII-----VCEDIAAPDEQAEVEALR 160
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G++V W S+L H D LP+ + ++P + FR+ V+ ++ + L + LP
Sbjct: 161 ASGLQVHTVWHSSLLHQDQLPWPVRQLPDVFTPFRQAVEHAKL-QPYPPLPVPEALPR-- 217
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS------MKGGETEALQRLKKFAAEYQ 358
P IP+ + Q A+S + G P+ ++ ++GGE+ AL L+++ A
Sbjct: 218 --VPPHIPN--EYLREQIPALSAL-AGPSPSLDTRSAIALLQGGESAALAHLRQYLARGL 272
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G ++S K S WLA G LSPR + EL++ + A
Sbjct: 273 PHSYKRTRNG----LVGLDYSSKWSLWLATGALSPRQAYAELRQFEATRGATES------ 322
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
S WL FELLWRD+FRF+ ++ A
Sbjct: 323 ------SYWLWFELLWRDYFRFLHMQHGRA 346
>gi|225010911|ref|ZP_03701378.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
gi|225004958|gb|EEG42913.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-3C]
Length = 427
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 164/328 (50%), Gaps = 36/328 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
SIVWF N+LRV DN L A N + V+ VYC +P K F K GP+RA F +ES
Sbjct: 3 SIVWFTNNLRVADNPLLTAACKNNANEVVGVYCLNPE---KLDGDFPKIGPFRAKFNVES 59
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL+++L+ + +G P L E +Y + +EV ++IEA +
Sbjct: 60 LLDLKRSLEELNIPFAILIGDPTKRLPEYINENNIGTLYFQKVWHEEEVLINKEIEAKI- 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
I++ + L + +PF+L ++P + FR+KV+ T+E L+ +P++
Sbjct: 119 SPNIQLVSLYDQFLLGPEIIPFELYKLPKVFTPFRKKVEA-----TLEVPAPLE-VPAK- 171
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS---MKGGETEALQRLKK--FAAEYQA 359
+ P L A++S+ K + S KGGE A +R+ F+ ++ A
Sbjct: 172 QTNTSNTPLFYSDAL--WASISKELLSIKIDSRSAFPFKGGEKAAQERIDHYFFSTDHVA 229
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
Q K ++G + G ++S K+S WLA GC+S R+++ +LK ++ A
Sbjct: 230 Q-YKETRNG----LIGLDYSTKLSAWLANGCISARTIYYQLKAYEKTVKA---------- 274
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W++FELLWR+FF+++ K+ +
Sbjct: 275 --NESTYWVLFELLWREFFKYVGLKHKN 300
>gi|359395694|ref|ZP_09188746.1| hypothetical protein KUC_2354 [Halomonas boliviensis LC1]
gi|357969959|gb|EHJ92406.1| hypothetical protein KUC_2354 [Halomonas boliviensis LC1]
Length = 481
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/319 (31%), Positives = 150/319 (47%), Gaps = 37/319 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD--KTGPYRASFLIES 184
IVW ++DLR+ DN L+ ++ +L +Y D + + G + GP R FL +S
Sbjct: 7 IVWLQDDLRIADNPLLHFVSS-PCYLLCLYVVDEQWFSPLFDGESTPRIGPARLRFLWQS 65
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ +LR L RGSDL+VR+GKP V++ELA + A V R H V+ I+A
Sbjct: 66 LMELRGELLRRGSDLLVRIGKPSDVVIELASTLNARQV---RVADHAGVEESAHIQAV-- 120
Query: 245 DEGI----EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
++G+ L LPF+ +P ++ FR +V+GV L
Sbjct: 121 EQGLPSHTAFDCLESGRLIDRQALPFEREALPASFSAFRRRVEGVCTVPVSRCAP--VTL 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ-A 359
P + G P L S W + GGE+ A RLK + + Q
Sbjct: 179 PPWPEAPRGFPP------LKAVCEQSANWQPDPRQGYAYWGGESAAHGRLKDYLWDQQGG 232
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
+ K ++G + GANFS ++SPWLA GCLS R + D +K + E+G
Sbjct: 233 ETYKKTRNG----LLGANFSTRVSPWLARGCLSARQVNDAVKAW-----------EAENG 277
Query: 420 SSGAGSNWLMFELLWRDFF 438
S+ + S W+ FELLWR++F
Sbjct: 278 SNES-SYWITFELLWREYF 295
>gi|448747406|ref|ZP_21729066.1| Cryptochrome, DASH [Halomonas titanicae BH1]
gi|445565098|gb|ELY21211.1| Cryptochrome, DASH [Halomonas titanicae BH1]
Length = 481
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 153/319 (47%), Gaps = 37/319 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-----GKSSSGFDKTGPYRASFL 181
IVW ++DLR+ DN L+ A+ S ++ +Y D R + G+S+ + GP R FL
Sbjct: 7 IVWLQDDLRIADNPLLHFASPPSY-LMCIYVLDERWFLPLFDGESTP---RIGPARLRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+S+ +LR L RGSDL+VR+GKP V++ELA + A V +E + +E
Sbjct: 63 WQSLMELRGELLKRGSDLLVRIGKPSDVVIELASKLNAREVRVADHAGVEEFAHIQAVEQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK-GL 300
+ + + L L LPF+ +P ++ FR + VE + A L
Sbjct: 123 GLPSQ-TALNCIESGRLIDLKALPFEREALPGSFSAFR---RSVESECAVPASRCAPITL 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ-A 359
P + G P L S W + +GGE+ A RLK + Q
Sbjct: 179 PPWPEAARGFPP------LKAVCEQSATWQPDPRQGYAYRGGESAAHGRLKDYLWRQQGG 232
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
+ K ++G + GANFS ++SPWLA GCLS R + DE A W + E+G
Sbjct: 233 ETYKKTRNG----LLGANFSTRVSPWLARGCLSARQV-DE---------AVKAW-EAENG 277
Query: 420 SSGAGSNWLMFELLWRDFF 438
S+ + S W+ FELLWR++F
Sbjct: 278 SNES-SYWISFELLWREYF 295
>gi|56459233|ref|YP_154514.1| deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
gi|81821701|sp|Q5QXE0.1|CRYD_IDILO RecName: Full=Cryptochrome DASH
gi|56178243|gb|AAV80965.1| Deoxyribodipyrimidine photolyase [Idiomarina loihiensis L2TR]
Length = 449
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 149/325 (45%), Gaps = 41/325 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R + FRNDLRV DN +L A S +++ +CF+P G G +R +FL +
Sbjct: 15 RLGLFVFRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQ 74
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ LR L+ RG L+V G + +L EL DA++ + + E+++ +
Sbjct: 75 SLKQLRTELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQHQGY-----YERLQLGL 129
Query: 244 KDEGIEVKYFW---GSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ F +TL+ +LPF+L ++P + FR+KV+ + +++ ++ L L
Sbjct: 130 LQQRFPFLPFHETPNNTLFSEQELPFELADLPETFSQFRKKVEPLSRNFSVQPVNALPSL 189
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
P + PG L+ + A++ +GGE AL L + + A
Sbjct: 190 P-KNISYPGFKAETLN----------------ELASDDFEGGERAALTHLTSYFSGESAG 232
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++ D + S K SPWLA GCLS R + L+ T GE+ S
Sbjct: 233 TYKQTRNALDD----FSSSTKFSPWLAQGCLSVRQIMAALRAYETEF--------GENES 280
Query: 421 SGAGSNWLMFELLWRDFFRFITKKY 445
S W+ FELLWR++F + K+
Sbjct: 281 ----SYWISFELLWREYFFWYALKH 301
>gi|254489917|ref|ZP_05103112.1| cryptochrome, DASH family [Methylophaga thiooxidans DMS010]
gi|224465002|gb|EEF81256.1| cryptochrome, DASH family [Methylophaga thiooxydans DMS010]
Length = 441
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 150/325 (46%), Gaps = 42/325 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKT--GPYRASFL 181
+ + WF NDLRVHDN +L A+ ++ ++C+D + +GF+ G R FL
Sbjct: 3 KTGLFWFNNDLRVHDNPALLEASLNCDRLICLFCYDT--FWDKPTGFNAKPLGDKRRQFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ES++DL+ L+ARG L+V G P ++ EL + VY V E + + + A
Sbjct: 61 LESLNDLQHTLEARGQQLIVMKGDPVAIISELLSKYHVNHVYRSYHVGVYENRQWQHLRA 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
++ +W +L+ LPF L +P + FR+ V+ + I K
Sbjct: 121 DFP--RVQFDSYWTHSLFQQRQLPFDLTSLPDTFSQFRKIVESLPIDK------------ 166
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK-KFAAEYQAQ 360
P +P L + +S+ + + + + GGE A++ ++ F+++Y AQ
Sbjct: 167 ------PVQMPKTLAVPVSELHEDTLPLPTYRNSQDHFTGGEKAAIEHMEAYFSSDYPAQ 220
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
D +H S S K S WLA G LS + + +L++ + +A
Sbjct: 221 YKLLRNDLDHWS-----HSTKFSAWLANGSLSVKRLLQQLRQFEKTHTA----------- 264
Query: 421 SGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F++ +Y
Sbjct: 265 -NESTYWIFFELLWREYFQWYAFRY 288
>gi|302838410|ref|XP_002950763.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
nagariensis]
gi|300263880|gb|EFJ48078.1| hypothetical protein VOLCADRAFT_37482 [Volvox carteri f.
nagariensis]
Length = 97
Score = 123 bits (308), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/96 (57%), Positives = 72/96 (75%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
A R+ +++WFRNDLR+HDN L+ A E SVLPVY DPRDYGK +GF +TGP RA
Sbjct: 1 GAARKPAVMWFRNDLRLHDNPVLDRACREGTSVLPVYVLDPRDYGKGPNGFGRTGPTRAQ 60
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAK 215
F++++V DLR L+A GSDL+VR+G PE V+ ELA+
Sbjct: 61 FIMDAVQDLRSRLRAAGSDLIVRMGHPEEVVPELAR 96
>gi|329894043|ref|ZP_08270028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
proteobacterium IMCC3088]
gi|328923215|gb|EGG30535.1| Deoxyribodipyrimidine photolyase, single-strand-specific [gamma
proteobacterium IMCC3088]
Length = 431
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 153/321 (47%), Gaps = 55/321 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFLIES 184
+++W +NDLR+ DN A+ S +L VYC+ PR + + G R FL E+
Sbjct: 3 TLLWLQNDLRLADNAGFQLASQAS-ELLIVYCWPKPRPWCNLTG----LGAQRTRFLSET 57
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ LR L G D+ V V PE VL + + +G + + R +++E S + ++ A+
Sbjct: 58 LEHLRHQLSELGQDVFVSVQHPEQVLPLMIEELGIEHLITSRPQAYNESNSLKALQDAL- 116
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
D + V G+TL+ DDL F L ++P ++ FR+K +E + E L K LP +
Sbjct: 117 DCNVSVTR--GNTLFDEDDLTFDLADLPKHFTPFRKK---MEAQPIAEPLATPKQLPPK- 170
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS-------MKGGETEALQRLKKFAAEY 357
+++V +G P+ N+ +GGE EAL+R+K + +
Sbjct: 171 --------------------ITEVRYGPTPSNNTRPHPTFPYRGGEQEALRRIKHWVFDR 210
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
QA +++ G + +SPWLA G +SPR++ +++ ++A
Sbjct: 211 QA---IATYKQTRNALDGLDNYSALSPWLATGAVSPRTILHHVQRFENEVTA-------- 259
Query: 418 SGSSGAGSNWLMFELLWRDFF 438
+ W+ FELLWR+FF
Sbjct: 260 ----NESTYWVFFELLWREFF 276
>gi|224003307|ref|XP_002291325.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
CCMP1335]
gi|220973101|gb|EED91432.1| Cryptochrome/Photolyase family 3 [Thalassiosira pseudonana
CCMP1335]
Length = 571
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 113/357 (31%), Positives = 170/357 (47%), Gaps = 60/357 (16%)
Query: 124 RASIVWFRN-DLRVHDNE--------SLNTANNESVS-----VLPVYCFDP-RDYG---K 165
+ +I FR DLR+HDN SL T+++++ S +LPV+ FD R YG K
Sbjct: 9 KLNIHLFRQTDLRLHDNPALCHTVDLSLGTSSSDAASTAPTGILPVFVFDTTRIYGSNAK 68
Query: 166 SSSGFD-KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA--- 221
S G + K GP RA F IE+V+DLR NL+ RGS LVV VG PE++L +A A +
Sbjct: 69 SRLGNNLKCGPRRARFAIEAVADLRSNLEKRGSGLVVAVGSPESILARIATAAVESSGDK 128
Query: 222 -----VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF-----WGSTLYHLDDLPFKLG-- 269
V EV +E+ ++ I +++ F WGST+Y + LPF G
Sbjct: 129 GALINVVCQEEVCSEELSVDKAIRSSLAKTMKSTSKFTFETVWGSTMYDPETLPFDGGVF 188
Query: 270 EMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVW 329
+P + F RK +EA Q+ + +P+L DLG + S
Sbjct: 189 GVPDIFSPF---------RKDVEAKCQIVN-DANNKCSLKYMPTLSDLGYNAEDIESVSS 238
Query: 330 HGGKPAA-NSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAM 388
+ A + +GGET AL+R+K + + K D + + G+++S K +PWLA+
Sbjct: 239 VDSRTALPVNYRGGETFALRRVKDYI--WDKDLLKLYFD-TRNGMIGSDYSTKFAPWLAL 295
Query: 389 GCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
G +SPR + E + E + W++ ELL RD F+F KK+
Sbjct: 296 GNVSPRYIARECSRYE------------EQRVQNKSTYWVVLELLIRDHFKFFAKKH 340
>gi|393216926|gb|EJD02416.1| cryptochrome, partial [Fomitiporia mediterranea MF3/22]
Length = 509
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 105/362 (29%), Positives = 170/362 (46%), Gaps = 58/362 (16%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDY----------------GKSS 167
I R+DLR+ DN + +T N ++P++ +P Y +S
Sbjct: 3 IYILRHDLRLADNPVFTAASTTNATFTHLIPLFILNPTQYEISGFLKPDEKSPFPEARSR 62
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI-GAD----A 221
G F + GPYRA FL ES+ DL+K+LQ GSDLV+R G+ V+ ++ K++ G D A
Sbjct: 63 LGQFWRCGPYRAKFLAESLFDLKKSLQCVGSDLVIRTGEAHDVIGKMIKSLNGGDSEVKA 122
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG-STLYHLDDLPFKLGEMPTNYGGFRE 280
V+ R+ + +E E KI + G+ + F STL +D+P+ ++P + F++
Sbjct: 123 VWMTRDFAAEEFDEERKIRKTLP-PGVSFRAFSDESTLISKNDVPYTAADLPDVFTSFKK 181
Query: 281 KVKGVEIRK--TIEALDQLKGLPSR--GDVEPGDIPSLLDLGLSQSAAMSQ--------- 327
V+ + I+ + + +P+ + P IP LD +S A+ Q
Sbjct: 182 SVEPLRSNAGMPIQNIPSIPPIPNDIPAQLHPFIIPKTLDDLIS---ALQQPLFNKPDIP 238
Query: 328 --VWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPW 385
+ G +A+ KGG T A RL + K ++G + G +FS K+S +
Sbjct: 239 LPAFPEGSFSAHPFKGGSTAARARLSHLISSDAVSTYKDTRNG----LIGWDFSTKLSAY 294
Query: 386 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
LA GC+S + LKK ++NDG+ G+ + FELLWRD+ R KY
Sbjct: 295 LAYGCISAGQVHAALKKW------EDEFNDGQENK---GTTAIRFELLWRDYMRLCLDKY 345
Query: 446 SS 447
+
Sbjct: 346 GT 347
>gi|384248771|gb|EIE22254.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Coccomyxa
subellipsoidea C-169]
Length = 482
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 152/325 (46%), Gaps = 47/325 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFR LR+HDN SL A + + PV+ DP D G R +FL+ES+
Sbjct: 10 SILWFRKGLRLHDNPSLLAAIKGATHLYPVFVLDPWFLKP-----DVVGVNRLNFLLESL 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR +LQARGS+L+V G P+ VL + K + + + + KI AA ++
Sbjct: 65 TDLRSSLQARGSNLLVLRGNPQDVLPRVWKDWNITRLCFEADTEDYAEERDTKITAAAQE 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP--- 301
GIEV TLY D+ K G+ P Y GF + + + K P
Sbjct: 125 AGIEVISCVSHTLYDTSDVVAKNGGKAPLTYKGFEKAITALGPPPAPVEDPPAKLPPLAA 184
Query: 302 -SRG-DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KKF 353
S+G D E +PSL +LG A+ +KGGETEAL RL K +
Sbjct: 185 DSKGTDSETTSVPSLRELGYPDE------------ASTDIKGGETEALARLAEQLSDKGW 232
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
A ++ PKG+ + + + +SP L GCLSPR ++ L++ +
Sbjct: 233 VAAFEK--PKGDP-----TAFIKPATTVLSPHLKFGCLSPRLFYEALQRV---------Y 276
Query: 414 NDGESGSSGAGSNWLMFELLWRDFF 438
+ + S S L+ +LLWR+F+
Sbjct: 277 KEKKEHSKPPVS--LLGQLLWREFY 299
>gi|335043044|ref|ZP_08536071.1| deoxyribodipyrimidine photolyase [Methylophaga aminisulfidivorans
MP]
gi|333789658|gb|EGL55540.1| deoxyribodipyrimidine photolyase [Methylophaga aminisulfidivorans
MP]
Length = 441
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 144/325 (44%), Gaps = 36/325 (11%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + + W ++DLR+HDN +L A+ ++ +YCFDP + +S G R FL
Sbjct: 1 MYKTGLYWIQHDLRIHDNAALLEASLNCEQLICLYCFDPTWFRQSRLNARSMGVVRRQFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+++ DL K L++RG L+V P + + L K DAVY V E + ++
Sbjct: 61 NKTLHDLGKELKSRGQRLIVMTADPVSAISVLIKNHDIDAVYRSHHVGVFETRQWHHLKV 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
W TL+ + LPF + ++P + F+E + + I K + A+ Q P
Sbjct: 121 DFPRTVFHS--VWTHTLFRPEQLPFSINDLPATFTDFKEFCETIAIDKPL-AMPQWLAPP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ +L L ++ G GGE AL L+++ + +
Sbjct: 178 ---------VKALTGLSHQTETDYGELIKGF--------GGEKTALDHLEQY---FSSDL 217
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
P N + + G S K+S WLA G LSPR + LK+ T +A
Sbjct: 218 P-ANYKTVRNELDGWENSTKMSAWLACGALSPRKLVARLKRYETEKTA------------ 264
Query: 422 GAGSNWLMFELLWRDFFRFITKKYS 446
+ W+ +ELLWR++F++ ++Y
Sbjct: 265 NESTYWIYYELLWREYFQWYAQRYQ 289
>gi|269965489|ref|ZP_06179607.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
gi|269829852|gb|EEZ84083.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
Length = 450
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 155/324 (47%), Gaps = 38/324 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRD-YGKSSSGFDKTGPYRASFL 181
++ + WF NDLR+HDN L +A+ E ++ +YC+ Y + G + FL
Sbjct: 3 KKIGLYWFTNDLRLHDNPLLKSASVEMDELICLYCYPSMTPYLHHFAQEASFGRAKLQFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+S+L ++L G L P+ + G +YA DE ++ +++
Sbjct: 63 DSSLSELNQSLNHLGQRLWAVELTPDQAIKYAVNRFGVTHIYADAFPGSDEQQALDRV-- 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
A +++K TL + LPF L +PT + FR++V+G++I + E++ L +P
Sbjct: 121 AEGASHVKIKQQAIRTLLREEQLPFDLSNLPTTFTQFRKQVEGLDISRPHESIRSLPPIP 180
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
++PS+ AA GGE+ L+ +++ A A
Sbjct: 181 L-----GVNLPSVTAYYFDAKAA--------------FHGGESRGLEHCRQYFASTLASE 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA GC+SP++++ LK+ + E+G++
Sbjct: 222 YKQTRNG----LDGMDYSTKFSPWLAHGCVSPKTIYAMLKRY-----------EAENGAN 266
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
+ + W+ FELLWR++F + +++
Sbjct: 267 DS-TYWIYFELLWREYFYWYARRH 289
>gi|376317003|emb|CCG00379.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteriia
bacterium]
gi|376317044|emb|CCG00419.1| deoxyribodipyrimidine photolyase [uncultured Flavobacteriia
bacterium]
Length = 415
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 146/311 (46%), Gaps = 32/311 (10%)
Query: 134 LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQ 193
+R+ DN SL+ A N S ++ DP+++ + GF KT YRA FL+E++SDL+ L
Sbjct: 1 MRIEDNISLSKAINNSDNIFAFINIDPKNFLLTKYGFKKTEKYRAKFLLETISDLKSQLD 60
Query: 194 ARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253
L++ + + E+ +Y E + DE+K E+ + DE +K F
Sbjct: 61 TLNISLIITHKDFDKSIKEIINNYEITNIYTQTEWTRDELKE----ESFIPDEINLIKDF 116
Query: 254 WGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIP 312
L+ +D+ +P + FR+K K + + T+ + L P + IP
Sbjct: 117 -DQFLFSPNDVKGLYDNIPRGFSNFRKKCEKYLSVNDTLSIPNSLN--PDNKILFDYSIP 173
Query: 313 SLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ-AQPPKGNKDGNHD 371
+L DLG K + KGGET A R+K + + + K ++G
Sbjct: 174 TLSDLGFEDFDV-------HKDSVFRFKGGETNAKDRIKNYFFDTRNVSRYKLTRNG--- 223
Query: 372 SIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFE 431
+ G ++S K SPWLA G +S + +F LK+ T + ND + WL FE
Sbjct: 224 -LIGEDYSSKFSPWLANGSVSVKYIFKLLKEYETKVEK----ND--------STYWLYFE 270
Query: 432 LLWRDFFRFIT 442
L+WRDFF++++
Sbjct: 271 LIWRDFFKYVS 281
>gi|225011847|ref|ZP_03702285.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
gi|225004350|gb|EEG42322.1| cryptochrome, DASH family [Flavobacteria bacterium MS024-2A]
Length = 433
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 147/329 (44%), Gaps = 32/329 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++VW RNDLR D S TA E V+ + F+P+DY K+ GF KTG +R FL+E
Sbjct: 2 KTALVWLRNDLRFEDQNSFFTACQEHERVVAYFSFEPKDYDKTMWGFTKTGKFRTHFLLE 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ L+ L+ + L+V T + + A A++ E + +E + + +
Sbjct: 62 TLRSLQTELENKNISLIVENRSAATGIPFWLDQLKATALFFQEEWTFEEKMISDAVVNQI 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
++ I V + LYH +D+ ++ +P + FR+K K IR A L S
Sbjct: 122 SND-INVYSHYDQFLYHPEDVSMEIQSIPKVFTEFRKKCEKFSNIRPCFSAPKVLN--KS 178
Query: 303 RGDVEPGDIPSLLDLGLS---QSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
E +P L D + A + + GG + N +RL Y
Sbjct: 179 SLLSETPAMPVLEDFEFTPFTHHANSAFPFKGGMVSGNDHLQNYFWNTKRLS-----YYK 233
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
Q G + G +S K SPWLA G LS R ++ E+ + +
Sbjct: 234 QTRNG--------LVGVGYSSKFSPWLANGSLSARVIYWEVMRYEKEVK----------- 274
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ WL+FELLWRD+F++I+ K+ ++
Sbjct: 275 -KNESTYWLIFELLWRDYFKYISLKHGNS 302
>gi|269104335|ref|ZP_06157031.1| deoxyribodipyrimidine photolyase single-strand-specific
[Photobacterium damselae subsp. damselae CIP 102761]
gi|268160975|gb|EEZ39472.1| deoxyribodipyrimidine photolyase single-strand-specific
[Photobacterium damselae subsp. damselae CIP 102761]
Length = 436
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 139/311 (44%), Gaps = 35/311 (11%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
F+NDLR+HDN +L A + +L VYC + G R FL++S+ L
Sbjct: 8 FQNDLRLHDNLALLNATTQCDRLLLVYCLPYHQANRYPYHIHNYGALRLQFLLQSLHQLH 67
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
+ LQ +L+V + P +L +L + + +V + E ++ + + + IE
Sbjct: 68 QQLQDLEQELLVFLEHPLHILPQLISQYDIHTIISSEQVGYYENQTWQTLN--QRYPYIE 125
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPG 309
K + TL H + LPF L ++P+ + FR +V+ +E+ + L P++
Sbjct: 126 FKQWPTHTLLHKEQLPFDLNKLPSTFSQFRRQVEHIELTPLTPYISHLPPSPNK----IA 181
Query: 310 DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 369
I S+LD +S P + GGE A+ L + +A K +
Sbjct: 182 HI-SILDSFISH------------PKPSDFIGGEATAISHLTAYFKSDKASRYKETR--- 225
Query: 370 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 429
+ + G ++S K SPWLA GCLS + + EL + + S W+
Sbjct: 226 -NDLDGWDYSTKFSPWLAQGCLSAKRVIYELNQYHHQVDET------------PSSQWIK 272
Query: 430 FELLWRDFFRF 440
FELLWR++F++
Sbjct: 273 FELLWREYFQW 283
>gi|388256896|ref|ZP_10134076.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
gi|387939100|gb|EIK45651.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
Length = 430
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 108/342 (31%), Positives = 158/342 (46%), Gaps = 44/342 (12%)
Query: 124 RASIVWFRNDLRVHDNESLN--TANNE---SVSVLPVYCFDPRDYGKSSSGFDKTGPYRA 178
R +I WFR DLR+HDN + ANN+ V VLP P Y + S G +R
Sbjct: 2 RKAIYWFRYDLRLHDNPGWSQLVANNDWVIGVYVLPDRWLRPLRYQQKSLGI-----HRQ 56
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
FL+ES+ LR+ L+ +GSDL+V VG P T L L + A+ DE + E+
Sbjct: 57 HFLLESLQQLRQQLRTQGSDLIVVVGDPATALTGLVERWNVSAMATGEYPGSDEQRDVER 116
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + I ++ TL+ +LPF L ++P + FR K VE R L +
Sbjct: 117 LRDMLD---IPLRCHENFTLFDRAELPFALADLPLIFSQFR---KLVEARPCSMPLPRAP 170
Query: 299 GLPSRGDVEPGDIPSLLD--LGLSQSAAMSQVWHGGKPAANS---MKGGETEALQRLKKF 353
L R V D P LD LG+ ++ + Q PA N GG T L +L+ F
Sbjct: 171 NL--RQPVVLEDSPCELDQWLGIMRAQQLVQ------PADNRRLPFHGGSTAGLAQLQYF 222
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
E++ N + + G +FS K+SPWLAMGCLS R +K
Sbjct: 223 LGEHKL---ISNYKNTRNGLDGWDFSSKLSPWLAMGCLSARQAVRAIKDYE--------- 270
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAV 455
++ + S WL FELLWR++F+++ ++ + V
Sbjct: 271 ---QAHGANESSYWLYFELLWREYFQWLAFRFGKQLFALRGV 309
>gi|345867345|ref|ZP_08819359.1| cryptochrome DASH [Bizionia argentinensis JUB59]
gi|344048275|gb|EGV43885.1| cryptochrome DASH [Bizionia argentinensis JUB59]
Length = 412
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 141/308 (45%), Gaps = 34/308 (11%)
Query: 152 VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLV 211
V+ +YCF+P+DY +S GF KT +RA F IESV DL+ L+ L KPE +
Sbjct: 11 VIAIYCFNPQDYENTSFGFKKTEKFRARFTIESVHDLKIQLETLNIPLFTVHEKPELAIS 70
Query: 212 ELAKAIGADAVYAHREVSHDE--VKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG 269
L + V+ +E + +E + K++ + EV + L+ DD +L
Sbjct: 71 SLCEKYHITDVFVQKEFTQEETNIIDAVKLKTSQNSNWHEV---YDQFLFQPDDGLRQLN 127
Query: 270 EMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQV 328
++P + FR+ + K +R I Q + + + E IP+L LG S+ +
Sbjct: 128 KIPKVFTNFRKILEKECSVRPLITPEKQ-ELFEIKNNTE---IPTLKTLGFSEFETHA-- 181
Query: 329 WHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAM 388
H P GGET A RL + E G + + G ++S K S WLA
Sbjct: 182 -HSAFP----FSGGETAAQNRLYNYVFE---TKKIGFYKKTRNGLLGVDYSSKFSAWLAN 233
Query: 389 GCLSPRSMFDELKKTATSISAASKWNDGESGS-SGAGSNWLMFELLWRDFFRFITKKYSS 447
GC+S R ++ ++ D E + WL+FEL+WRDFF++I ++ +
Sbjct: 234 GCISARQIYWAIQ-------------DFEKEHFKNQSTYWLIFELIWRDFFKYIAWQHGN 280
Query: 448 AKKVVEAV 455
A +E +
Sbjct: 281 AIFHLEGI 288
>gi|410861787|ref|YP_006977021.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii AltDE1]
gi|410819049|gb|AFV85666.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii AltDE1]
Length = 435
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 153/330 (46%), Gaps = 32/330 (9%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRA 178
G++ + + WFR+DLR+HD ++ V Y D + + ++ GF G +R
Sbjct: 10 GSSDVQRGVFWFRHDLRLHDQPAIAELCTAVSQVTFTYILDDKCFDDAAFGFSPMGKHRH 69
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
+FL++++SDL++ L RG +L++ G +V+L A G + + DE
Sbjct: 70 TFLLQTLSDLKQQLNQRGHELLILKGNTAECIVQLLNAGGYTHLGVSQHCGFDETAQLNT 129
Query: 239 IEAAMKD-EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
++ IE F L+ + LPF + MP + FR KV+ + + L+++
Sbjct: 130 VKRFFNTLRVIETPTF---GLFDAEVLPFDIEGMPDVFSPFRRKVE--KHCTPLPVLERI 184
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
LP G + D +LD+ LS KP+ +S GGE+ AL L+ + ++
Sbjct: 185 AQLPD-GFMPNIDKQYILDIELSLP----------KPSPSSFIGGESAALNHLETYLFDW 233
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
+A D+ S K+S WLA G LS R + ++++ +I ND
Sbjct: 234 KAAATYKETRNTLDTWKD---STKLSAWLANGSLSAREVIRQVQRFEQTIEK----ND-- 284
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR+FF ++ KY +
Sbjct: 285 ------STYWVYFELLWREFFHWLQCKYGA 308
>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 550
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/335 (28%), Positives = 161/335 (48%), Gaps = 41/335 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+I WFRN LR HDN L A +S S+LP+Y DP ++ + + + G RA+FL+ES
Sbjct: 11 VAIHWFRNGLRFHDNPCLLDACQKSESLLPIYVVDP-EFPFAQTAGCRAGTIRANFLLES 69
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE----VSHDEVKSEEKIE 240
++++ + L+ GS LVV +GK VL E+ A A++ +E V + ++ + I+
Sbjct: 70 INEVDEKLRKMGSQLVVVLGKSHEVLPEIVATTQAKALFYEQEAAAPVREQDAETIQAIK 129
Query: 241 AAMKDEG--IEVKY--FWGSTLYHLDDLPFKLGE--MPTNYGGFREKVKGVEIRKTIEAL 294
+K +G E K+ + TL+ ++ + + P+ YG F + + + K + +
Sbjct: 130 NRLKRDGKNYECKFEAYATHTLHPMERYLAQCKDHTAPSTYGSFTKIFNKMSVAKEVNEV 189
Query: 295 DQLKGLPSRGD-------VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEAL 347
++ LP++ E +P+L DLG +AA + + GK + GGE A+
Sbjct: 190 KEVPSLPNKSVKLLEKSFAEALRMPTLKDLGY--AAAADDMKNSGK-GGYAFAGGENAAI 246
Query: 348 QRLKKFAAEYQ-----AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 402
+ L K A Q +P D S + +SP++ GC+SPR + EL K
Sbjct: 247 ELLAKNMARSQWVATFEKPKTSPNDATRPS------TTALSPYVKHGCISPRRFYHELSK 300
Query: 403 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 437
SK+N E+ L +L+WRDF
Sbjct: 301 V------YSKYNSKETSKPPVS---LHGQLMWRDF 326
>gi|331006214|ref|ZP_08329536.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
gi|330419971|gb|EGG94315.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC1989]
Length = 477
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/339 (26%), Positives = 144/339 (42%), Gaps = 40/339 (11%)
Query: 125 ASIVWFRNDLRVHDNESL---NTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++WF +DLR+HDN L N NN +L +YC D + + G + +R +FL
Sbjct: 10 TTLLWFTHDLRIHDNALLFYANKINNNKHRLLCLYCIDEEWFEQDRFGLQRIATHRWNFL 69
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ S+ L LQA G LV+ G P ++ +L + V + V ++E ++I
Sbjct: 70 VGSLHALNTELQALGQQLVIAKGNPTEIISDLLSRYSINTVISSNTVGYNEQAYWQEISN 129
Query: 242 AMKDEG-IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
I+ + F TL+ LPF L +P N+ FR ++ + LD +K
Sbjct: 130 KYPHLAFIQQETF---TLFAESQLPFLLNNLPDNFSKFRRLIEST--KNHPHYLDAIK-- 182
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVW------------HGGKPAANSM--KGGETEA 346
S +P +P L + L + S W H NS+ GGE
Sbjct: 183 -SSLIGQPTKLPPKLHITLQEEHQFS--WPRTSTIPNGKNNHDINANKNSLGFYGGEASG 239
Query: 347 LQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
+ LK++ + K ++ S K SPWLA G LS R + L +
Sbjct: 240 ISHLKQYFSTNAPSHYKDTRNALGCEKEEWQLSSKFSPWLANGSLSARYIVQMLSRYE-- 297
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E + + W+MFELLWR++F++ +KY
Sbjct: 298 ----------EENGANDSTYWIMFELLWREYFQWYARKY 326
>gi|308049734|ref|YP_003913300.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
gi|307631924|gb|ADN76226.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Ferrimonas balearica DSM 9799]
Length = 435
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 149/319 (46%), Gaps = 40/319 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +++WFR+DLR+ DN +L A ++L +YC +PR + + + G + F+ E
Sbjct: 2 KRALLWFRHDLRLDDNPALLRAAQAKEALLCLYCIEPRWFVADNWQSRRVGDHPWRFISE 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ DL L+A G LV+R+G P T++ L + D + +E + ++ +
Sbjct: 62 SLLDLANRLEALGQQLVIRIGDPNTLIPGLMRNHWIDKLICTAPFGEEERRQYLALKQEV 121
Query: 244 KDEGIEVKYFWGS-TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ EV W S TL+ L+ LPF L E+P + FR +V+ +E R + +L
Sbjct: 122 GEHRCEV---WQSHTLFTLEQLPFALDELPPTFSQFRRRVQRLEWRPLYPPVTEL----- 173
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
P L L +S +GG+T A L + A P
Sbjct: 174 ---------PKPLALTSETPPPVSTP------PNPQYQGGQTAAEAHLAHYLA---GAAP 215
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K K +++ + S K+SPWLA GCLS R+ +L+ + + G++
Sbjct: 216 KHYKQ-TRNALDDWSSSTKLSPWLAQGCLSARTAVAQLEAY-----------EAQHGANE 263
Query: 423 AGSNWLMFELLWRDFFRFI 441
+ + W+ ELLWR++F+++
Sbjct: 264 S-TEWIQVELLWREYFQWL 281
>gi|359483005|ref|XP_002285327.2| PREDICTED: (6-4)DNA photolyase [Vitis vinifera]
Length = 564
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 155/342 (45%), Gaps = 42/342 (12%)
Query: 111 HRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKS 166
HRP PN A +S++WFR LR+HDN +L A ES V PV+ DP D
Sbjct: 18 HRPNSPNPSMASGSSSLMWFRKGLRIHDNPALQHAAKESNCVYPVFVIDPYFMEPDPNAF 77
Query: 167 SSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226
S G + G R FL+ES+ DL +L+ GS L+V G P V++ K +
Sbjct: 78 SPGSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEY 137
Query: 227 EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV 285
+ + K++ GIEV TL+ ++ K G P +Y F K+ G
Sbjct: 138 DTDPYYQALDIKVKNYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFL-KLAGQ 196
Query: 286 EIRKTIEALDQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGG 342
+ L L LP GDV E ++P++ +LG + G+ + KGG
Sbjct: 197 PSWASSPLLTTLSWLPPVGDVGTCEISNVPTVKELGYEEI---------GQDESTPFKGG 247
Query: 343 ETEALQRL------KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 396
E+EAL+RL K++ A ++ PKG+ S + + +SP+L GCLS R
Sbjct: 248 ESEALKRLRESIRDKEWVANFEK--PKGDP-----SAFLKPATTVLSPYLKFGCLSSRYF 300
Query: 397 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ L T + KW+ S L+ +LLWRDFF
Sbjct: 301 YQCL----TDVYKNMKWHTSPPVS-------LVGQLLWRDFF 331
>gi|410621443|ref|ZP_11332290.1| cryptochrome DASH [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410158958|dbj|GAC27664.1| cryptochrome DASH [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 439
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 150/332 (45%), Gaps = 48/332 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDK---TGPYRAS 179
++ + WFR DLR+ DN SL ++ ++ VY + P S + K G +R +
Sbjct: 3 KKVGLHWFRKDLRIQDNASLAELASQVDELVCVYVYQPEANQDSINELHKKESIGKHRLN 62
Query: 180 FLIESVSDLRKNLQARGSDLVV---RVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
F+ +++ DL L L+V P ++ L KA+ + A +E K
Sbjct: 63 FIHQTLHDLNSTLSDFNQRLIVLSTNKADPVEAILTLVKALNVTHLSAQWHCGFNERKEW 122
Query: 237 EK-----IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKT 290
++ IEA + E I+V STL+++ PF + MP + FR+KV K E++
Sbjct: 123 QQTQDLVIEAGLNIEFIQVN---SSTLFNVSQFPFSIENMPNTFSPFRKKVEKYCEVQAI 179
Query: 291 IEALDQLKGLPSRGDVE-PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQR 349
L+ L +P +E D+ SLL + ++ +S GGE +A Q+
Sbjct: 180 NPVLNALPSIPDLFTIENVMDLDSLL-VSVNHYQRLS--------------GGENDAHQQ 224
Query: 350 LKKFA-AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
L + + K ++G + G +FS K S WLA+GC+SPR ++ EL + +
Sbjct: 225 LTHYLWSTDHISRYKETRNG----LDGWDFSSKFSAWLALGCISPRQIYAELCRYES--- 277
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
+ WL FELLWR+FF +
Sbjct: 278 ---------ERVKNESTYWLFFELLWREFFHW 300
>gi|407683883|ref|YP_006799057.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245494|gb|AFT74680.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str.
'English Channel 673']
Length = 435
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 151/330 (45%), Gaps = 48/330 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR+DLR+HDN ++++ V +Y D + + ++ GF G +R +FL++++
Sbjct: 18 LYWFRHDLRLHDNAAISSLCEAVQQVTFLYILDDKAFTPTTYGFAPMGKHRHTFLLQTLV 77
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL++ L G DL++ G P LV+L K+ Y+H VS + +E+ +
Sbjct: 78 DLKRQLAKLGHDLLIVKGDPAECLVQLMKS----GQYSHLGVS-EHCGFDERAQLNT--- 129
Query: 247 GIEVKYFWGST---------LYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
VK F+ S L+ LPF + EMP + FR KV+
Sbjct: 130 ---VKRFFDSVTVIETPTFGLFDAQTLPFNIKEMPDVFSPFRRKVE-----------KHC 175
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
K L +E +PS L +S + P+ +S GGET AL L + ++
Sbjct: 176 KPLSVHPPME--SLPSPFTPQLDESFLFAIDTDLPSPSQSSFVGGETAALTHLNTYLFDW 233
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
+A + D+ S K+S WLA G LS R + ++++ ++ ND
Sbjct: 234 KAAATYKDTRNALDTWQD---STKLSAWLANGSLSAREVIRQVQQFEATVEK----ND-- 284
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR+FF ++ KY +
Sbjct: 285 ------STYWIYFELLWREFFHWLQCKYGA 308
>gi|297582918|ref|YP_003698698.1| DASH family cryptochrome [Bacillus selenitireducens MLS10]
gi|297141375|gb|ADH98132.1| cryptochrome, DASH family [Bacillus selenitireducens MLS10]
Length = 478
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 155/329 (47%), Gaps = 36/329 (10%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+R +++WFR+DLR+HD+E L A+ V+ D R K + G + G +R FL
Sbjct: 1 MRMVNVIWFRHDLRIHDHEPLRLAHWAKEETEAVFVRDARMDEKVTPGLKRAGEHRERFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ES+ L +L+A G V G +++ GA V+ H +E + E+++
Sbjct: 61 MESLVVLAGSLEAEGMPFTVLKGPVVKTMIDWLTERGATDVFLHEHPGFEERRDLEEVQR 120
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG---VEIRKTIEALDQLK 298
A+ V G T++ D LPF E P ++ FR++++ + +K + D
Sbjct: 121 ALPHIHWHVSE--GHTMFRRDQLPFSFSEFPMSFTMFRKRLEAHLRLPEKKRSFSYDSYD 178
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGK--PAANS---MKGGETEALQRLKKF 353
+ + EP + L +S + V G P A ++GGE EAL RL+ +
Sbjct: 179 TVT---EAEP------VFLSGKESGSFGAVRGSGDHIPHAGGQGIVRGGEQEALARLRSY 229
Query: 354 AAEY-QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ K +DG ++ + S K+S WLA G LSP+ ++ + + AA+
Sbjct: 230 VGNASRLFTYKETRDG----MFAFDDSSKLSFWLANGSLSPKRVY----RAILDMEAANG 281
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFI 441
N+ S WL FELLWR++F+++
Sbjct: 282 RNES--------SYWLFFELLWREYFQWL 302
>gi|406596892|ref|YP_006748022.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
gi|406374213|gb|AFS37468.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii ATCC 27126]
Length = 435
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 150/333 (45%), Gaps = 54/333 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR+DLR+HDN +++ V +Y D + + ++ GF G +R +FL++++
Sbjct: 18 LYWFRHDLRLHDNAAISALCEAVQQVTFLYILDDKAFTPTTYGFAPMGKHRHTFLLQTLV 77
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS-HDEVKSEEKIEAAMKD 245
DL++ L G DL++ G P LV+L K+ Y+H VS H ++ A
Sbjct: 78 DLKRQLAKLGHDLLIVKGDPAECLVQLMKS----GQYSHLGVSEHCGFDERAQLNA---- 129
Query: 246 EGIEVKYFWGST---------LYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ 296
VK F+ S L+ LPF + EMP + FR KV+ K + L
Sbjct: 130 ----VKRFFDSVTVIETPTFGLFDAQTLPFNIEEMPDVFSPFRRKVE-----KHCKPL-- 178
Query: 297 LKGLPSRGDVEP--GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
V P +PS L +S + P+ +S GGET AL L +
Sbjct: 179 --------SVHPPMDSLPSPFTPQLDESFLFAIDTDLPSPSQSSFVGGETAALTHLNTYL 230
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+++A + D+ S K+S WLA G LS R + ++++ ++ N
Sbjct: 231 FDWKAAATYKDTRNALDTWQD---STKLSAWLANGSLSAREVIRQVQQFEATVEK----N 283
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
D + W+ FELLWR+FF ++ KY +
Sbjct: 284 D--------STYWIYFELLWREFFHWLQCKYGA 308
>gi|224002573|ref|XP_002290958.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972734|gb|EED91065.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 420
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 141/292 (48%), Gaps = 39/292 (13%)
Query: 172 KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA--------VY 223
K GP R F +E+V+DLR NL+ RGS LVV VG PE +L +A + + V
Sbjct: 4 KCGPRRVQFALEAVADLRSNLEKRGSGLVVAVGNPEEILATIATSAVESSGDNGALINVV 63
Query: 224 AHREVSHDEVKSEEKIEA----AMKDEG-IEVKYFWGSTLYHLDDLPFKLG--EMPTNYG 276
EV +E+ ++ I + AMK + + WGST+Y + LPF G +P +
Sbjct: 64 CQEEVCSEELTVDKAIRSSLAKAMKTKSKFNFETVWGSTMYDPETLPFDGGVFGIPDTFT 123
Query: 277 GFREKVKGV-EIRKTIEA-LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKP 334
FR KV+ + EI ++ D+ LP +P+L DLG + S +
Sbjct: 124 PFRNKVEKICEIGAPLDCPKDEYLSLPKNY------MPTLFDLGYNAEDIESVSSVDSRT 177
Query: 335 AA-NSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSP 393
A + +GGET ALQR+K + + K D + + G+++S K +PWLA+G +SP
Sbjct: 178 ALPVNYRGGETFALQRVKDYI--WDKNLLKVYFD-TRNGMIGSDYSTKFAPWLALGNVSP 234
Query: 394 RSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
R + E + E + W++FELL RD F+F KK+
Sbjct: 235 RYIARECSRYE------------EQRVQNKSTYWVVFELLIRDHFKFFAKKH 274
>gi|441503036|ref|ZP_20985043.1| Cryptochrome [Photobacterium sp. AK15]
gi|441429252|gb|ELR66707.1| Cryptochrome [Photobacterium sp. AK15]
Length = 435
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 145/317 (45%), Gaps = 38/317 (11%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
F+NDLR+HDN +L A E ++ +YC + G R FL++S++DL
Sbjct: 8 FQNDLRLHDNPALALAAKEVNELICIYCLPQHKANMLPYSVTQLGTQRQQFLLQSLTDLN 67
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
+ L LV+ + P +L EL A+Y + E +S + ++ + ++
Sbjct: 68 RQLNQCRQHLVILLDHPLNILPELITQYNVSALYRSQHAGFYENQSWQILKK--RYPYLQ 125
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPG 309
TL+ +LPF + ++P + FR++V+ I+K + +L LPS + P
Sbjct: 126 FTTVASHTLFDQPELPFDIEDLPPTFSKFRKQVENHPIQKPMR---RLTSLPSPPNTLPK 182
Query: 310 -DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 368
D+ S L L+ ++ GGE L L + A K +
Sbjct: 183 FDVISPL---LTHHSS-------------EFTGGEEAGLSHLTAYFASRHPSHYKLTR-- 224
Query: 369 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 428
+++ G S K+SPWLA+GCLSPR++ + L+ + E SS + W+
Sbjct: 225 --NALDGWENSTKLSPWLALGCLSPRTLIERLEIYHQQV---------EQNSS---TEWI 270
Query: 429 MFELLWRDFFRFITKKY 445
FELLWR++F++ + +
Sbjct: 271 KFELLWREYFQWYSHNH 287
>gi|90415708|ref|ZP_01223642.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HTCC2207]
gi|90333031|gb|EAS48201.1| deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2207]
Length = 447
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 152/346 (43%), Gaps = 30/346 (8%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + WF +DLR+ DN +L A E ++ +YC D + G K P R FL
Sbjct: 1 MQKVGLFWFNHDLRMDDNAALVLAAAEVDKLICLYCADTTNTGPGWQQPAKLSPRRREFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ DL L G LVVR+ P + +L +Y+ V E +I
Sbjct: 61 FESLQDLETQLSQYGQKLVVRIQPPLEAIAQLITVHNVSHLYSANHVG----SYENRIWN 116
Query: 242 AMKDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA-LDQLK 298
++ +E TL+ LPF + ++P ++ FR ++ +++ I A LD +
Sbjct: 117 TLRKRYPMLEFNQSHTHTLFAPSQLPFTIDKLPASFSKFRRLIEKMDLDSVISAPLDAPE 176
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
LP P + + L + S + G + KGG + + LK + A+
Sbjct: 177 KLPP-----PASVADIAWQPLWRDHYSSNL--DGDDSPALFKGGASAGEEHLKGYFAKDL 229
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
A K ++G + G ++S K SPWLA G LSPR + +L++ A ND
Sbjct: 230 ASSYKQTRNG----LDGMDYSTKFSPWLANGTLSPRRIVQQLQEYEARAGA----ND--- 278
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGAL 464
+ W+ FELLWR++F++ ++ + +A T +
Sbjct: 279 -----STYWIFFELLWREYFQWYGHRHQQQLYAFTGIAQSAPTTSF 319
>gi|89075135|ref|ZP_01161571.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
gi|89049089|gb|EAR54655.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
Length = 443
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 143/317 (45%), Gaps = 36/317 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF NDLR+HDN L+ A S+L VY +P+ + G R FL++++
Sbjct: 5 ALYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPKKQQFNRYQLISVGEIRHRFLLQAL 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L+ NL G L+V P + L + G + +Y R E + ++
Sbjct: 65 QALQSNLATLGQRLLVMQADPMVSMPVLIEQYGINLIYRSRHCGWYEQQQWCYLKQCYPH 124
Query: 246 -EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSR 303
+EV TLY D LPF L +MP +Y FR+++ + V + I D LP +
Sbjct: 125 LRFVEVD---THTLYSQDQLPFPLLDMPKSYSKFRKQIEQNVTVSSPILVPDY---LPPQ 178
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
+V + + + +S + + WH GGE AL L+++ + ++ P
Sbjct: 179 PNVFCSEYLDIRHVHISDNDQVE--WH----------GGENAALMHLQQY---FSSRLPS 223
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
K+ ++I G N S K SPWLA G +S + + L+ + +
Sbjct: 224 SYKE-TRNAIEGWNNSTKFSPWLACGAISAKMIMARLQDYE------------KYKEKNS 270
Query: 424 GSNWLMFELLWRDFFRF 440
+ W+ FELLWR+FF++
Sbjct: 271 STYWIFFELLWREFFQW 287
>gi|424039979|ref|ZP_17778239.1| cryptochrome DASH [Vibrio cholerae HENC-02]
gi|408892368|gb|EKM29890.1| cryptochrome DASH [Vibrio cholerae HENC-02]
Length = 450
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 150/328 (45%), Gaps = 54/328 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR------DYGKSSSGFDKTGPYRASF 180
+ WF NDLR+HDN +L A E ++ +YC+ P+ Y ++S + G + F
Sbjct: 7 LYWFTNDLRLHDNPNLAKAAEEVDFLICLYCY-PKVSPFLAHYAQTS----ELGQPKRQF 61
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L ES+ L +L A L+V P L K +G +Y DE EKI+
Sbjct: 62 LDESLHCLNLSLNALEQRLLVVDLHPYQALKHALKNLGVTRLYVDAMPGCDEQSVIEKIK 121
Query: 241 AAMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
A + + EV+ +L+ L DLPF L +P + FR++V+ + I + I+ +
Sbjct: 122 AEERHVAVVQHEVR-----SLFRLADLPFSLNALPDTFTQFRKQVEKLSISQPIDRVSTF 176
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
LP +G SL L L++ KP GGE L+ +++
Sbjct: 177 PPLP-KG-------LSLPTLSLTRDL---------KPMP--FAGGEHAGLEHCRRYFDSP 217
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
A K ++G + G ++S K SPWLA GC+S + + D LK+ A ND
Sbjct: 218 LASEYKQTRNG----LDGMDYSTKFSPWLAHGCVSAKRIVDMLKRYEADYGA----ND-- 267
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + ++Y
Sbjct: 268 ------STYWIYFELLWREYFYWYARRY 289
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 146/315 (46%), Gaps = 42/315 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR DLR+ DN +L A + V+PV+ FD + TG R +FL+ES+
Sbjct: 6 LCWFRRDLRLDDNTALLAAYAAAEEVVPVFIFDDAILSRPD-----TGAVRVAFLLESLR 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L +NL+ARGS L++R G+PE VL +L A AVY +R+V + + ++ A ++
Sbjct: 61 NLDENLRARGSRLLLRRGRPEHVLAQLVTETAASAVYFNRDVEPFALARDARVRAHLEGR 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
V+ F L + + K G T + +R+ V I + A L+ + DV
Sbjct: 121 -CAVEGFDDGGLTAPEAVRTKAGTPYTVFTPYRQAVLAQPIPRPRLAPAMLR---TPADV 176
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
PSL DLG + S + GGET A RL+ F A +
Sbjct: 177 PSDPWPSLKDLGFATS-------------VSPPPGGETSAQARLQGFIQNGLA------R 217
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
+ A+ + ++SP+L GCLSPR + ++ GS G S
Sbjct: 218 YATERDVLSADGTSRLSPYLRFGCLSPRRAYWAAREAV------------PEGSPGMES- 264
Query: 427 WLMFELLWRDFFRFI 441
W+ EL+WRDF+R I
Sbjct: 265 WIA-ELIWRDFYRQI 278
>gi|302918988|ref|XP_003052768.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
77-13-4]
gi|256733708|gb|EEU47055.1| hypothetical protein NECHADRAFT_22205 [Nectria haematococca mpVI
77-13-4]
Length = 640
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 160/358 (44%), Gaps = 50/358 (13%)
Query: 130 FRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRD--------------YGKSSSG--- 169
R DLR DN L TA++ +LPVY P Y K+ S
Sbjct: 11 LRRDLRATDNPILHHLATADHGFTHLLPVYVLPPHQIEVSGFLTENQKSPYPKALSQVGR 70
Query: 170 FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----ADAVYA 224
F + GP+RA F ESV DL+ +L+ GS LV+R+G V+ +L +A+ DAV+
Sbjct: 71 FWRCGPHRAKFTAESVWDLKDSLEDLGSGLVLRIGSFSDVVRQLIQALNDNHHSVDAVWM 130
Query: 225 HREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG----FRE 280
+VS +EV ++ + A ++ + K W Y +DD P +L ++ T+Y RE
Sbjct: 131 TEDVSSEEVDDQDAVSAVCSEKSVGFK-LWRDDKYFIDDNPKELPDVFTSYRKTQEPLRE 189
Query: 281 KVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSL-----------LDLGLSQSAAMSQVW 329
+ + R +L L D P +P +D L+ + Q
Sbjct: 190 RPRRSLPRPQAGSLPPLPPWTPPQDA-PFQVPDTYEEFERRLLQPIDYMLANPPVLPQ-- 246
Query: 330 HGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMG 389
+A+ GGE+ A +RL+ + ++G + G ++S K+S +LA+G
Sbjct: 247 --DAKSAHPFDGGESFAWERLRHLIRTGGMCTYQETRNG----LLGKDYSTKLSGYLALG 300
Query: 390 CLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
C+S RS+ +EL K A G G+ + FELLWRD+ R TKK+ +
Sbjct: 301 CISARSIHEELLKLEDGTDQAYARARGFDRGENEGTKAVRFELLWRDYMRLCTKKFGA 358
>gi|387127435|ref|YP_006296040.1| Cryptochrome [Methylophaga sp. JAM1]
gi|386274497|gb|AFI84395.1| Cryptochrome [Methylophaga sp. JAM1]
Length = 437
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 145/322 (45%), Gaps = 41/322 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WF NDLR+ D +L +SV ++ V+C DP+ + + G R FL+ES+
Sbjct: 5 LFWFTNDLRLQDQPAL--WKMQSVDKLICVFCLDPQWFRPNGLNAKAMGERRFQFLVESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL++ LQ G L+++ P L EL D + + E + + ++ D
Sbjct: 63 KDLQQQLQHAGQVLIIKQQTPHLALTELINKYNVDIIARSQHAGVYENRHWKLLQQQFPD 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ TL+ DDL F+L ++PT++ FR++V+ + + + + + QL P
Sbjct: 123 RKFITEP--SHTLFSADDLSFQLNQLPTSFTQFRKQVEDLALPRPMSSPQQLPPPPGPIA 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ + P L +P+ GGET AL+ + +Y + N
Sbjct: 181 IDEINQPVL------------------EPS--KFTGGETAALKHIN----DYFSTDLPAN 216
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
+ + G S K SPWLA+GCLS R + LK N ++ S +
Sbjct: 217 YKTVRNELDGWTNSTKFSPWLALGCLSVRHLAARLK------------NYEQTNVSNDST 264
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
W+ FELLWR++F++ Y +
Sbjct: 265 YWIYFELLWREYFQWYAHCYGA 286
>gi|90578157|ref|ZP_01233968.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
gi|90441243|gb|EAS66423.1| deoxyribodipyrimidine photolyase [Photobacterium angustum S14]
Length = 443
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 142/316 (44%), Gaps = 36/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WF NDLR+HDN L+ A S+L VY +P+ + G R FL++++
Sbjct: 6 LYWFTNDLRLHDNPILHQAYEHCDSLLCVYFMEPQKQQFNRYQLVSVGEIRHRFLLQALQ 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD- 245
L+ NL G L+V P + L + G + +Y R E + ++
Sbjct: 66 ALQSNLATLGQRLLVMQADPMLSMPVLIEQYGINLIYRSRHCGWYEQQQWRYLKQCYPHL 125
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRG 304
+EV TLY D LPF L +MP +Y FR+++ + V + + D LP +
Sbjct: 126 RFVEVD---THTLYSQDQLPFPLSDMPKSYSKFRKQIEQNVTVSSPLLVPDY---LPPQP 179
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
+V D + + +S + + WH GGE AL L+++ + + P
Sbjct: 180 NVFCSDYLDIRHVHISDNDQVE--WH----------GGENAALMHLQQY---FSSSLPSN 224
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
K+ ++I G + S K SPWLA G LS K ++ K+ + S +
Sbjct: 225 YKE-TRNAIEGWDNSTKFSPWLACGALSA-------KMIMATLLDYEKYKEKNSSTY--- 273
Query: 425 SNWLMFELLWRDFFRF 440
W+ FELLWR+FF++
Sbjct: 274 --WIFFELLWREFFQW 287
>gi|407700131|ref|YP_006824918.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Black
Sea 11']
gi|407249278|gb|AFT78463.1| deoxyribodipyrimidine photolyase [Alteromonas macleodii str. 'Black
Sea 11']
Length = 435
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 142/327 (43%), Gaps = 32/327 (9%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + + WFR+DLR+HD ++ T + + VY D +++ + G G +R +FL
Sbjct: 13 LNQRGLFWFRHDLRLHDQAAIATLCKKVAQITFVYILDDKNFSPNEFGLSPMGQHRHTFL 72
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++ DL++ L G +L+V GK L L +A + + +DE ++
Sbjct: 73 LQTLEDLKRQLAGLGHELLVLKGKTVECLANLLQAGQYTHIGVSQHCGYDETAQLNAVKR 132
Query: 242 AMKD-EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+E F L+ + LPF + +MP + FR KV+ + + + D L L
Sbjct: 133 FSNSLTVVETPTF---GLFDVSTLPFSVEDMPDVFSPFRRKVE--KHSEPLPVHDALASL 187
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
P P D L L + A P+ S GGET AL L + ++Q+
Sbjct: 188 PD-AFTPPLDESFHLTLDIDLPA----------PSETSFIGGETAALSHLGTYLFDWQSA 236
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
DS S K S WLA G LS R E+ + A + ND
Sbjct: 237 SSYKETRNALDSWQD---STKFSAWLANGSLSAR----EVVRQVQLFEATVEKND----- 284
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR+FF ++ KY +
Sbjct: 285 ---STYWIYFELLWREFFHWLQYKYGA 308
>gi|452824798|gb|EME31798.1| cryptochrome, DASH family [Galdieria sulphuraria]
Length = 570
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 158/351 (45%), Gaps = 51/351 (14%)
Query: 111 HRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGF 170
HR + NG +I+WFRN+LR+ DN L+ AN +VLP+Y FD R ++
Sbjct: 64 HRVPESLNGGT----AILWFRNNLRLSDNSCLDLANTAE-AVLPLYVFDKRSLVRNRLKQ 118
Query: 171 DKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSH 230
+ GP+R SF+ ESV L+ NL+ SDL+V VG V+ EL + + A + +
Sbjct: 119 QRCGPFRYSFVKESVEQLQNNLRGLFSDLLVEVGTAAEVIRELCAKYSINHIVAPKMIKV 178
Query: 231 DEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT 290
+V +E + A + W TL D+L + E ++ F V + K
Sbjct: 179 SQVATELHLNAC---------FVWDCTLLSFDEL--IVNEYQHSFETFYNSVISKGLPKI 227
Query: 291 IEALDQ-----LKGLPSRGDVEPG---DIPSLL-DLGLSQSAAMSQVWHGGKP-AANSMK 340
E LD LK LP +P +P L+ DLG+ ++ W +P A +
Sbjct: 228 FE-LDNSQRPFLKPLPF--GYKPSFAIPLPHLVNDLGV-ENLCTPYEWPFPEPRAVYPFR 283
Query: 341 GGETEALQRLKKFAAE---YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
GGE A +RL + + Q N G DS S K+SPW+++GC+S R ++
Sbjct: 284 GGEDSAKERLTDYFVKKNGLQLIADLENYSGVMDS------STKLSPWISIGCVSVRQVY 337
Query: 398 DELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
E ++ ++ S + WL LWRDF + + SA
Sbjct: 338 WEGYRSYM-----------KNMDSQVANLWLK-RFLWRDFLYLLCLQEGSA 376
>gi|323493058|ref|ZP_08098192.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
gi|323312706|gb|EGA65836.1| deoxyribodipyrimidine photolyase [Vibrio brasiliensis LMG 20546]
Length = 449
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 144/320 (45%), Gaps = 38/320 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WF NDLRVHDN L+ A E ++ +YC+ Y S K + FL S+
Sbjct: 7 LYWFTNDLRVHDNPLLSKAAAEVDQLICLYCYPSVSPYLARYSQQAKWSEPKLQFLDASL 66
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L +L A L+V P + +L +G +Y DE + ++A
Sbjct: 67 HCLNLSLNALNQRLLVVDSHPYHAIKDLVYGLGVSHLYVDAVAGCDEQSIIDSLKAEF-- 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ ++V TL+ L+ LPF+L +P + FR++V+ + + I + +L LP
Sbjct: 125 DALDVAQKEVRTLFTLEQLPFELSALPDTFTQFRKQVEPLVVPLPISWVKRLPSLP---- 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
D SL + L+ HGG +GGE L +++ + + P
Sbjct: 181 ----DTLSLPGISLTH--------HGGSAL---FEGGEQAGLAHCRRY---FSSACPSEY 222
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
K+ +++ G ++S K SPWLA GCLS ++++ LK+ + +
Sbjct: 223 KE-TRNALDGLDYSTKFSPWLAHGCLSAKTIYAMLKRYE------------RLNGANEST 269
Query: 426 NWLMFELLWRDFFRFITKKY 445
W+ FELLWR++F + ++Y
Sbjct: 270 YWIYFELLWREYFYWYARRY 289
>gi|350532661|ref|ZP_08911602.1| deoxyribodipyrimidine photolyase [Vibrio rotiferianus DAT722]
Length = 444
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 40/321 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRASFLIES 184
+ WF NDLRVHDN +L A +E ++ +YC+ P+ Y + + G + FL ES
Sbjct: 5 LYWFTNDLRVHDNPNLTKATSEVDLLVCLYCY-PKISSYLAQYAQVSQFGVAKQQFLDES 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L +L L+V + P + + G +Y DE K++
Sbjct: 64 LFCLNSSLNTLKQRLLVVILHPYHAIKHAIENFGVTRLYVSAISGCDEQAVLAKLQVEYP 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
I V +L+ LPFK ++P + FR K VE+ E ++++ LP
Sbjct: 124 H--ISVVQQEAQSLFCSGQLPFKTDDLPDTFTKFR---KQVEVLLISEPVEKVSALPPAP 178
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
+ P + L L++ KPA S GGE L+ +++ + A K
Sbjct: 179 ETLP-----ISTLNLTRDL---------KPALFS--GGEQAGLEHCRQYFSSTLASEYKQ 222
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + G ++S K+SPWLA GCLSP+++ LK+ + E+G++ +
Sbjct: 223 TRNG----LDGMDYSTKLSPWLAHGCLSPKTICGMLKRY-----------EAENGANDS- 266
Query: 425 SNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + ++Y
Sbjct: 267 TYWIYFELLWREYFYWYARRY 287
>gi|109896483|ref|YP_659738.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas atlantica T6c]
gi|109698764|gb|ABG38684.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Pseudoalteromonas atlantica T6c]
Length = 445
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 155/335 (46%), Gaps = 48/335 (14%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
+A+ + I WFR+DLR+HDN +L + + +L V+ DPR + S G R +
Sbjct: 6 SALPKRGIFWFRHDLRLHDNPALVALSEQVDELLCVFIIDPRWFKSSHFQSAHMGDKRWA 65
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL +S+S+L+++LQ +G L V G+ VL L + D V + E + +++
Sbjct: 66 FLQQSLSELQRHLQEQGQQLFVLEGETLEVLDALIGSYTPDIVASGMHPGVYERQQWQRV 125
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI------RKTIEA 293
+ + + G +L+ LPF++ +P ++ FR++V+ +++ +
Sbjct: 126 KQGNPNTLFIQEN--GHSLFQPATLPFEIEYLPASFTPFRKRVEDLQVAVALPAPTALPP 183
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK-K 352
L L S+ +V P K + GGE AL +L+
Sbjct: 184 APDLAWLSSK-NVNPPK----------------------KAIGLAFTGGEDAALAQLEYT 220
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ + K ++G + G ++S K+SPWLA GCLS R +F EL++ +
Sbjct: 221 LFTSHNIKNYKQTRNG----LDGWDYSSKLSPWLANGCLSVRQVFTELRRYESEYEK--- 273
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
ND + WL FELLWR++F++ KY S
Sbjct: 274 -ND--------STYWLYFELLWREYFQWHLFKYQS 299
>gi|330447966|ref|ZP_08311614.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328492157|dbj|GAA06111.1| cryptochrome DASH [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 441
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 136/321 (42%), Gaps = 36/321 (11%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
A+R ++ W DLR+HDNE + + + ++L VY +P+ + G R F
Sbjct: 2 AVR--ALYWLTQDLRLHDNEIFHQVRDHADNLLCVYFIEPQWQTFNRYQLKSMGEIRHRF 59
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L++S+ L NL G LVV +P L L + + +Y R E + + I+
Sbjct: 60 LLQSLQTLHSNLTRFGQQLVVVQAEPLLSLPALIQQHRINVIYRSRHCGWYEQQQWQYIK 119
Query: 241 AAMKD-EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
+EV TLY LPF L +MP+ Y FR+ I + L
Sbjct: 120 QYFPHLRFVEVD---THTLYSQQQLPFHLSDMPSGYSKFRKL-----IERDTNVTKPLPQ 171
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
+ LD+G A S V +GGE AL LK++ +
Sbjct: 172 PEYLPPPPKMNSSDYLDIGRVYIADNSNV---------EWQGGENAALMHLKQY---FSC 219
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
P K+ +++ G S K SPWLA G LS +++ LK +++A S
Sbjct: 220 DAPANYKE-TRNALAGWELSTKFSPWLACGSLSAKTIMAALKDYEQNVTANS-------- 270
Query: 420 SSGAGSNWLMFELLWRDFFRF 440
+ W+ FELLWR+FF++
Sbjct: 271 ----STYWIFFELLWREFFQW 287
>gi|119476543|ref|ZP_01616894.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
gi|119450407|gb|EAW31642.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2143]
Length = 444
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 140/333 (42%), Gaps = 45/333 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + WF +DLR+ DN +L A E +++ +YC D G S + R FL
Sbjct: 1 MQKVGLFWFNHDLRIDDNATLLRAAAEVDTLICLYCADTAKTGPGSRQPAELSLRRREFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ DL L G LVVR+ P + +L +Y V E I
Sbjct: 61 FESLQDLEAQLNRHGQKLVVRIQPPLEAIAQLITVHNVSHIYRSNHVG----SYENTIWT 116
Query: 242 AMKDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
++ + TL+ LPF + ++P+++ FR V+ ++I
Sbjct: 117 ILRKRYGMLTFTQCHTHTLFEPSQLPFAIDQLPSSFSKFRRVVEKMDI------------ 164
Query: 300 LPSRGDVEPGDIP-SLLDLGLSQSAAMSQVWH------GGKPAANSMKGGETEALQRLKK 352
+ G EP P SL L A + WH PA +GG + + L+
Sbjct: 165 --NSGIAEPLPTPTSLPKPALVADLAWQKRWHEYFTQSSDSPAL--FRGGASAGRRHLEN 220
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ +A K ++G + G ++S K SPWLA G LS R + +L+
Sbjct: 221 YFGSRRASDYKATRNG----LDGMDYSTKFSPWLANGSLSTRHIVRQLQGYE-------- 268
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E + + W++FELLWR++F++ KY
Sbjct: 269 ----ERAGANDSTYWILFELLWREYFQWYGHKY 297
>gi|358451749|ref|ZP_09162182.1| DNA photolyase FAD-binding subunit [Marinobacter manganoxydans
MnI7-9]
gi|357224218|gb|EHJ02750.1| DNA photolyase FAD-binding subunit [Marinobacter manganoxydans
MnI7-9]
Length = 440
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 148/331 (44%), Gaps = 48/331 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF DLR+HDN SL A ++S +L +Y DPR + G +R FL +S+
Sbjct: 3 TLYWFTRDLRLHDNASL-LAASKSDMLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+ G L + G+PETV+ +LA A + V R E + I+ +
Sbjct: 62 MALERSLRTLGQRLHIAFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIKDRLPK 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR-------KTIEALDQLK 298
+ F +L+ LP LGE+P + FR++V+ R +T+ AL
Sbjct: 122 AVFQQ--FETLSLFTEGSLPMALGELPDTFSQFRKQVEKTGDRCSERLRIRTLTALPPPP 179
Query: 299 GLP--SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
G P +RGD P IP + GGE L RL++F
Sbjct: 180 GFPEDNRGDCPP--IPEPVH-------------------PLQFMGGEAAGLARLQEFL-- 216
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Y K+ +++ + S K SPWLA GCLS R E+ +T T A+ N+
Sbjct: 217 YDNHSIDRYKE-TRNALDTWDASSKFSPWLANGCLSVR----EVAETITEYEASETKNE- 270
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL FELLWR++F + K+ +
Sbjct: 271 -------STYWLWFELLWREYFYWYALKHGA 294
>gi|384501095|gb|EIE91586.1| hypothetical protein RO3G_16297 [Rhizopus delemar RA 99-880]
Length = 434
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 34/294 (11%)
Query: 171 DKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD-----AVYAH 225
++ YR F+IESV L K LQ R S+L++ GKPE +L EL++ + + ++ H
Sbjct: 26 ERCANYRTRFVIESVMALEKELQKRKSNLLILFGKPERLLKELSEFLKKNDCEIHQIHTH 85
Query: 226 REVSHDEVKSEEKIEAAMKDEGIE---------------VKYFWGSTLYHLDDLPFKLGE 270
+EVS +K + MK E + + +T+ H DD+ F +
Sbjct: 86 KEVSRTLMKRNTRKSHFMKKYAYEELVVEKELTKIWNKTIAFHHDTTMIHPDDVDFTFEQ 145
Query: 271 MPTNYGGFREKVKGVE--IRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQV 328
P Y FR +++ + +R ++ D+L P D+ S L + +
Sbjct: 146 TPKVYAHFRRRIEKMNQPVRPLLQIPDELPAFP---DIIWKFPQSEQGKDLLEELYEAFA 202
Query: 329 WHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAM 388
+ + +A GGE A +RL+ + + N + + G +S K S +L+
Sbjct: 203 FEKDERSAFPWPGGEDAARKRLENYLFKTDGAI---NYKQTRNGMIGTEYSTKFSAYLSH 259
Query: 389 GCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFIT 442
GCLSPR ++ EL + + ++G G W+ FELLWRDFFRF+
Sbjct: 260 GCLSPRLIWHELNRLQSQKKI------DKTGGDEDGIYWIRFELLWRDFFRFLV 307
>gi|254784878|ref|YP_003072306.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
gi|237684101|gb|ACR11365.1| deoxyribodipyrimidine photolyase [Teredinibacter turnerae T7901]
Length = 447
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 139/319 (43%), Gaps = 37/319 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R + WF NDLR+ DN +LN A +++ VY DPR Y + G GP R FL E
Sbjct: 9 RVGVFWFSNDLRITDNAALNYAAQSCETLICVYILDPRLYAPNRYGLRSMGPMRDRFLQE 68
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L +L A G L+V P + +L V R+ E K ++
Sbjct: 69 SLAQLSVDLNAVGQTLLVLRESPLQAMAQLIGKYDPGLVVRSRQAGFYEYKQWAMLQRRY 128
Query: 244 KDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLP 301
+ I K TL++ +D LPF L ++P + FR+KV+ + +IR + D LP
Sbjct: 129 R--LISFKDIATHTLFNDEDLLPFPLTDLPKTFSQFRKKVEPLADIRNLLPVCD----LP 182
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
D +L QS ++ KGG +Q+L+ + +
Sbjct: 183 PPPRGLKRDHTFRRELLKHQSRSI-------------FKGGAEAGIQQLQGY---FHTTA 226
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
P K +++ G S K+SPWLA GCLS + L + SA
Sbjct: 227 PSEYKT-VRNALDGWGNSTKLSPWLANGCLSVNQVLLALGEYEAQYSA------------ 273
Query: 422 GAGSNWLMFELLWRDFFRF 440
+ W+ FELLWR++F++
Sbjct: 274 NESTYWISFELLWREYFQW 292
>gi|424030869|ref|ZP_17770339.1| cryptochrome DASH [Vibrio cholerae HENC-01]
gi|408880647|gb|EKM19568.1| cryptochrome DASH [Vibrio cholerae HENC-01]
Length = 450
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 149/325 (45%), Gaps = 48/325 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR------DYGKSSSGFDKTGPYRASF 180
+ WF NDLR+HDN +L A E ++ +YC+ P+ Y ++S + G + F
Sbjct: 7 LYWFTNDLRLHDNPNLAKAAEEVDFLICLYCY-PKVSPFLAHYAQTS----EFGQPKRQF 61
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L ES+ L +L A L+V P L K +G +Y DE E+I+
Sbjct: 62 LDESLHCLNLSLNALEQRLLVVDLHPYQALKHAFKNLGVTRLYVDAMPGCDEQNVIEEIK 121
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A ++ + V +L+ L DLPF L +P + FR++V+ + I + + + L L
Sbjct: 122 A--EERHVTVVQHEVRSLFRLADLPFSLNALPDTFTQFRKQVEKLSISQPADRVSTLPPL 179
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
P +G SL L L++ KP GGE L+ +++ A
Sbjct: 180 P-KG-------LSLPTLSLTRDL---------KPMP--FAGGEHAGLEHCRRYFDSPLAS 220
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + G ++S K SPWLA GC+S + + D LK+ A ND
Sbjct: 221 EYKQTRNG----LDGMDYSTKFSPWLAHGCVSAKRIVDMLKRYEADYGA----ND----- 267
Query: 421 SGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + ++Y
Sbjct: 268 ---STYWIYFELLWREYFYWYARRY 289
>gi|407924950|gb|EKG17973.1| Cryptochrome/DNA photolyase class 1 [Macrophomina phaseolina MS6]
Length = 654
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 106/388 (27%), Positives = 167/388 (43%), Gaps = 75/388 (19%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVS-------VLPVYCF----------------DP 160
R I R DLR+ DN + + + S VLPVY P
Sbjct: 7 RILIYLLRRDLRLSDNPVFHHLSQQCGSNSSSFTHVLPVYVIPANQVEVSGFLRPGTQSP 66
Query: 161 RDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA 219
+S +GF + GP+RA FL ESV DL+ +L GSDL++RVG VL ++ G
Sbjct: 67 YPEARSQVAGFWRCGPHRAKFLAESVWDLKTSLGKIGSDLIIRVGMVGDVLQDMLSWYGK 126
Query: 220 D-----------------AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262
+ ++ E +E + E A G+E+K W Y +D
Sbjct: 127 NPDIPNGDTDGEGKGTIAGIWMTAEEGVEEQREERDARRAADASGVELK-LWADEKYFVD 185
Query: 263 --DLPF-KLGEMPTNYGGFREKVKGVEIR--------KTIEALDQLKGLPSRGD--VEPG 309
DLPF + ++P Y FR+ ++ + R K++ +L +P + P
Sbjct: 186 DRDLPFTDIKDLPDVYTTFRKSLEPLRERPRPTTSMPKSLPSLPPASSIPPQAGPFTSPE 245
Query: 310 DIPSLLD-----LGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
+ S++D + L+ + W G +A+ +GGET A R+ A K
Sbjct: 246 SLSSMIDSLHKPIDLAMAMENPPQWPSGAKSAHPFEGGETAAQNRVSHLIASGSMANYKE 305
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK-------KTATSISAASKWNDGE 417
++G + G ++S K+S WLA+GC++ R + L S AA + GE
Sbjct: 306 TRNG----LLGEDYSTKLSSWLALGCVTARQVHASLAAYEDGSPNAPDSWKAAPGYGQGE 361
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ AG+ + FELLWRD+ R T+K+
Sbjct: 362 N----AGTAAVRFELLWRDYMRLCTRKF 385
>gi|451971961|ref|ZP_21925175.1| Deoxyribodipyrimidine photolyase [Vibrio alginolyticus E0666]
gi|451932148|gb|EMD79828.1| Deoxyribodipyrimidine photolyase [Vibrio alginolyticus E0666]
Length = 444
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 144/325 (44%), Gaps = 40/325 (12%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLR+HDN L A E ++ +YC Y + + G + FL
Sbjct: 3 KKIGLYWFTNDLRLHDNPLLVDACAEMDELICLYCRPSVTPYLQHFAQETSLGRAKLQFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+++L ++L G L P L G +YA DE ++ +E
Sbjct: 63 EASLNELNQSLAKLGQRLWTVELTPYQALKYAISHFGITHIYADAFAGSDE---QQALER 119
Query: 242 AMKDE-GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A+K + +K TL + LPF+L ++P + FR++V G+++ + E++ L +
Sbjct: 120 AIKGTPHVNIKQQAIRTLLCEEQLPFELRQLPATFTKFRKQVAGLDLSQPYESVHVLPPV 179
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
PS G P D KPA GGE L+ +++ A A
Sbjct: 180 PS-GTNFPTATTYYFDT---------------KPA---FDGGELSGLEHCRRYFASSLAS 220
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + G +S K SPWLA GC+SP ++ LK+ A ND
Sbjct: 221 EYKQTRNG----LDGVEYSTKFSPWLAHGCVSPTIIYAMLKQYERKNGA----ND----- 267
Query: 421 SGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + +KY
Sbjct: 268 ---STYWIYFELLWREYFYWYARKY 289
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 148/325 (45%), Gaps = 36/325 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
I WFR DLR+HDN +L+TA+ S V+P++ D + +TG R +F+I ++
Sbjct: 4 IHWFRRDLRLHDNPALHTASIRSDGRVIPLFILD-----DAILHAPRTGAARIAFMIAAL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ARGS LV+R G+ V+ + + GA V +R+ + + + ++EAA++D
Sbjct: 59 RDLDANLRARGSRLVIRRGRTLDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRD 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG---LPS 302
+E + ++ DD+ G T Y +R + + + ++ E L ++ P+
Sbjct: 119 LNVETSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRRWRALTEQRRAEVLRAIEPPLLRPA 178
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
V +P DLG+ S + GGET RL F A
Sbjct: 179 PEAVADQTVPDHADLGIVVSQRIP-------------PGGETHGAARLAAFVDLAAAHSI 225
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND--GESGS 420
G +G + + ++SP+L GC++PR ++ AA + D G+
Sbjct: 226 AGYAEGR--DLLAEPATSRLSPYLRFGCVAPRQ----------ALRAALRLLDIVGDDHR 273
Query: 421 SGAGSNWLMFELLWRDFFRFITKKY 445
+ + EL WRDF+ I Y
Sbjct: 274 TVRSIETWIGELAWRDFYYQILWHY 298
>gi|410665733|ref|YP_006918104.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
gi|409028090|gb|AFV00375.1| Cryptochrome [Simiduia agarivorans SA1 = DSM 21679]
Length = 433
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 145/320 (45%), Gaps = 42/320 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
S+ WF NDLR+ DN +L A ++ +Y DPR + G R +FL++S
Sbjct: 4 VSLHWFINDLRLADNPALCRAAMAD-RLICLYVIDPRWFRPGRQQLPSMGEKRRTFLLQS 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++DL + L+A G L+V G PE+++ EL + + + + + +E ++ I+ A
Sbjct: 63 LADLDRRLRALGQQLLVLEGHPESLIPELVRRYRVNRLTVNEVCTVNEYRTLASIDNAC- 121
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+ V F G+ L L E P + FR++V+ +E R + A L P
Sbjct: 122 -HALVVDTFAGNQL--LSSRYRGHREFPLGFSQFRKQVEPLECRPIMAAPPSLPATP--- 175
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
L +Q +++ P + + GGET A +L K + P+
Sbjct: 176 ------------LPRTQPVSLA------SPGSGAFAGGETFAQVQLGKV---FDGMLPRR 214
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
K N D++ + S K+SPWLA+GC+SP ++ L W D
Sbjct: 215 YKS-NRDALDQWDGSTKLSPWLALGCISPVQVWWRLL----------HWQDTHGFCE--S 261
Query: 425 SNWLMFELLWRDFFRFITKK 444
S W+ FELLWR+FF + ++
Sbjct: 262 SYWVGFELLWREFFHHLARE 281
>gi|407726057|dbj|BAM46126.1| cryptochrome DASH [Lentinula edodes]
gi|407955603|dbj|BAM48913.1| cryptochrome dash [Lentinula edodes]
Length = 622
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 171/388 (44%), Gaps = 71/388 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANN--ESVSVLPVYCFDPRDY-----------------GKSS 167
I FR DLR+ DN + + +LP+Y P +S
Sbjct: 4 IYLFRRDLRISDNPIFHHLQKHPQFCHILPLYILPPNQIEVSGFLQDPKLESHYPQARSR 63
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAK------AIGAD 220
G F + GP+RA FL ES+ DL+++L+ RGSDL+VRVG+ E V+ ++ K +G
Sbjct: 64 LGKFWRCGPHRAKFLAESIWDLKESLKHRGSDLIVRVGRMEDVVGQILKRKEFQGKVG-- 121
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEG---IEVKYFWGSTLYHLDDLPFKL---GEMPTN 274
AV+ ++ + +EV E +IE A+K EG IE K + G + L+D F ++P
Sbjct: 122 AVWMTKDWASEEVNEELRIERAVKKEGDGKIEWKVWDGEEML-LNDNDFSTSDPAQVPDV 180
Query: 275 YGGFREKVKGVEIRKTIEALDQLKGLPSR-----GDVEPGDIPSLLDLGLSQSAAMSQVW 329
+ FR+ + + + LP P IP+ LD +S Q
Sbjct: 181 FTSFRKSFEPLRDNIRVPHCSTHSNLPPIPPKVPTQAAPFTIPTSLDDFISSLQKPVQDC 240
Query: 330 HGGKP--------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCK 381
G P A+ GGET A +R+ K ++G + G +FS K
Sbjct: 241 GLGPPILKPQGASTAHPFIGGETSAHERILHLLVSGSLSTYKDTRNG----LLGEDFSTK 296
Query: 382 ISPWLAMGCLSPRS------MFDELK---------KTATSISAASKWNDGESGSSGAGSN 426
+S +LA+GC++ R F++ K T +++ A + GE+ + A
Sbjct: 297 LSAYLALGCVTARQANAYMVAFEDGKDLPDFGIRLNTEVNLANAKGFGKGENKGTAA--- 353
Query: 427 WLMFELLWRDFFRFITKKYSSAKKVVEA 454
+ FELLWRD+ R +K+ S +E
Sbjct: 354 -VRFELLWRDYMRLCMRKFGSELFSIEG 380
>gi|323496729|ref|ZP_08101774.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
gi|323318154|gb|EGA71120.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
Length = 417
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 147/349 (42%), Gaps = 50/349 (14%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASF 180
+ + + WF NDLRV DN L A +E ++ VY + + SG + G +R F
Sbjct: 1 MHKTGLYWFTNDLRVADNPLLTEAASEVDQLICVYLYPQLTPFLAQFSGQQQLGAHRLRF 60
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+ +++ DL +L +G L V E L L + +Y +R DE K ++
Sbjct: 61 VDQALQDLNHSLAKQGQRLAVIHQTAEQTLPSLIEQYNVTHLYVNRCAGWDETKQMHTLK 120
Query: 241 AA---MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
+K + V ++L+ LPF L ++P + FR+ ++ V R + + +L
Sbjct: 121 QQFPYLKVVSLSV-----NSLFQESQLPFTLAQLPATFTRFRKCMEPVNTRDLL-PVSEL 174
Query: 298 KG--LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
LP +P H P + + GGET Q + + +
Sbjct: 175 PSTPLPPEERSQP---------------------HQADPRVDYL-GGETAGQQHCQWYFS 212
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
A K ++G + G ++S K SPWLA+GCLSP + +++ I A
Sbjct: 213 HDFASHYKQTRNG----LVGKSYSTKFSPWLALGCLSPAQLVAYIQRYEHEIGA------ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGAL 464
+ W++FELLWR++F + K+ + + A+ T L
Sbjct: 263 ------NESTYWIVFELLWREYFYWYAMKHGALLFARSGITASTVTKPL 305
>gi|260778085|ref|ZP_05886978.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
coralliilyticus ATCC BAA-450]
gi|260606098|gb|EEX32383.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
coralliilyticus ATCC BAA-450]
Length = 440
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 145/326 (44%), Gaps = 45/326 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRD-YGKSSSGFDKTGPYRASFL 181
++ + WF DLR+ DN L A+ E S+L VYC D Y S G R +FL
Sbjct: 3 QKVGLYWFTCDLRIQDNPLLWQASCEVDSLLCVYCLPQMDRYLVRYSQEQSLGSERLAFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+SV+ L ++L+ G L+V +P VL + G Y +E +++
Sbjct: 63 QQSVACLSQSLENMGQKLLVFDDRPLDVLNRFIQDYGVTHFYCDLFSGVNEQSVVDRLSQ 122
Query: 242 AMKD-EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ-LKG 299
D I+ +TL+ LPF LGE+P+ + FR++V+ + I +D L
Sbjct: 123 LHSDLTCIQEPV---NTLFSQRLLPFTLGELPSTFTQFRKQVEHLPI-----GVDSSLSA 174
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LP P + S L+ M +V + GGET L + A A
Sbjct: 175 LPE----PPAQVISTLN--------MEEV------SCQLFAGGETLGLAHCSGYFATSLA 216
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
K ++ + G +FS K SPWLA+GCLSP+ +F L++ A ND
Sbjct: 217 SHYKQTRN----ELDGFDFSTKFSPWLAVGCLSPKRIFVLLQEYEQREGA----ND---- 264
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + K +
Sbjct: 265 ----STYWIFFELLWREYFHWYGKLW 286
>gi|333906605|ref|YP_004480191.1| DASH family cryptochrome [Marinomonas posidonica IVIA-Po-181]
gi|333476611|gb|AEF53272.1| cryptochrome, DASH family [Marinomonas posidonica IVIA-Po-181]
Length = 439
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 147/339 (43%), Gaps = 41/339 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VWF NDLR D + L A E ++ +YC +P S R FL +
Sbjct: 2 KMGLVWFGNDLRCTDQQMLWRAAQEVDQLICLYCDEPEHTRPSRYATQGMSDNRRQFLYQ 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ L + L + G L V L L + +Y + +E +S + +
Sbjct: 62 GLDSLAQQLDSLGHPLFVSQLDAINSLTLLLNELPISHIYMNHRAGWNEQESLRHLTSQF 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
D + + G +L+ LPF + E+P + FR ++ + I
Sbjct: 122 SDVRFHIDH--GQSLFEAWRLPFNITELPDTFSKFRRQITSLNI---------------- 163
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQV--WHGGKPAANSM-KGGETEALQRLKKFAAEYQAQ 360
EP +PS+L L L +++Q+ W S+ GGE A Q+LK + + +
Sbjct: 164 --TEP--LPSILQLPLPVHCSLTQIQAWQIRPVTTESLFTGGEKAAQQQLKYY---FNSN 216
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
P+ K +++ G S K S WLA G LSP+ + I+A +K+ + E G+
Sbjct: 217 LPRHYKQVR-NALAGWENSTKFSAWLAQGSLSPKQV----------IAALTKY-EAEQGA 264
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATA 459
+ + ++W+ FELLWR++F + + A V + ATA
Sbjct: 265 NES-TDWIYFELLWREYFHWYATCHGRALFTVNGLTATA 302
>gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 149/328 (45%), Gaps = 42/328 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
+S++WFR LR+HDN +L A ES V PV+ DP D S G + G R F
Sbjct: 6 SSLMWFRKGLRIHDNPALQHAAKESNCVYPVFVIDPYFMEPDPNAFSPGSSRAGLNRIRF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ES+ DL +L+ GS L+V G P V++ K + + + K++
Sbjct: 66 LLESLVDLDSSLRQLGSRLLVLKGDPGEVIIRCLKEWEVKRLCFEYDTDPYYQALDIKVK 125
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
GIEV TL+ ++ K G P +Y F K+ G + L L
Sbjct: 126 NYASAAGIEVFSPVSHTLFDSAEIIQKNGGRPPLSYQSFL-KLAGQPSWASSPLLTTLSW 184
Query: 300 LPSRGDV---EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------ 350
LP GDV E ++P++ +LG + G+ + KGGE+EAL+RL
Sbjct: 185 LPPVGDVGTCEISNVPTVKELGYEEI---------GQDESTPFKGGESEALKRLRESIRD 235
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
K++ A ++ PKG+ S + + +SP+L GCLS R + L T +
Sbjct: 236 KEWVANFEK--PKGDP-----SAFLKPATTVLSPYLKFGCLSSRYFYQCL----TDVYKN 284
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
KW+ S L+ +LLWRDFF
Sbjct: 285 MKWHTSPPVS-------LVGQLLWRDFF 305
>gi|453088659|gb|EMF16699.1| cryptochrome [Mycosphaerella populorum SO2202]
Length = 626
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 164/384 (42%), Gaps = 77/384 (20%)
Query: 122 IRRASIVWFRNDLRVHDNESLN---TANNES----VSVLPVYCF---------------- 158
++R I R DLR+ DN N N +S VLP+Y F
Sbjct: 4 LQRVLIYLLRRDLRLADNPIFNELAQLNAQSQKPFTHVLPIYIFAAEQVEISGFLSSNQD 63
Query: 159 -DPRDYGKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
P +S G F + G +R F+ ESV DL+++L+ SDLV+RVG + + L
Sbjct: 64 KSPYKEARSRVGKFWRCGSHRVKFVAESVWDLKQDLRKIQSDLVIRVGSVKDAVQSL--- 120
Query: 217 IGADAVYAHREVSHDEVKS--------------EEKIEAAMKDEGIEVKYFWGSTLYHLD 262
V A+RE E+ E+ ++ +++ G E K W Y +D
Sbjct: 121 -----VDAYREREDAEIHGLWMTSEEGWEEQNEEKAVKTILEENGKEFK-LWTDEKYFID 174
Query: 263 D--LPFKL-GEMPTNYGGFREKVKGVEI--RKTIEALDQLKGLPSR--GDVEPGDIPSLL 315
D +PFK ++P + +R+ V+ + RK + DQ+ LP P IPS
Sbjct: 175 DRDVPFKNPRDLPDVFTTYRKMVEPLRDGPRKELAKPDQMLPLPDHIPAQARPFTIPSTY 234
Query: 316 DLGLSQSAAMS--------------QVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
D L AA++ QV K +A+ GG T +R++
Sbjct: 235 DEVL---AALTKPLGKQPIDVPEPPQVSQNAK-SAHPFVGGSTSGHERIRHLIDSGSMTS 290
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G +FS K+S WLAMGC+S R + +L A K +G
Sbjct: 291 YKDTRNG----LLGLDFSTKLSAWLAMGCISSRQVHWQLVDFEDGKGACGKSANGYGKGE 346
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GS + FELLWRD+ R T+K+
Sbjct: 347 SKGSAAVRFELLWRDYMRLCTRKF 370
>gi|384082237|ref|ZP_09993412.1| deoxyribodipyrimidine photo-lyase type I [gamma proteobacterium
HIMB30]
Length = 429
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 141/329 (42%), Gaps = 49/329 (14%)
Query: 127 IVWF-RNDLRVHDNESLN----TANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++W R+ RV DN +LN AN V+P+ C +PR + G +TG + A F
Sbjct: 6 VIWLVRDSCRVVDNPALNLATQIANERDAFVIPLACLEPRRWADQQFGMPRTGTHWARFR 65
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ LR +L ARGS L V +P L + ++ V R ++ +E +IEA
Sbjct: 66 SESLKALRADLIARGSGLWVSAEEPVYALNRINPSVNVIKVVCDRPLATEERLENARIEA 125
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR---EKVKGVEIRKTIEALDQLK 298
EG V L+ + LPF+L E+P + FR EK G+ +E + +L
Sbjct: 126 ----EGYPVVTHDVDDLFRFEQLPFELDELPATFSKFRKIVEKKPGLAPDPPVE-MHELT 180
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
+ +P + D LS A + GGET+A ++ Y
Sbjct: 181 PCMEQPWPDPVEWIETFDNQLSPRAEVETY------------GGETQA----QRHWNTYL 224
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ ++ G S +S WLA GCLS R + W+D +
Sbjct: 225 DAKALSHYKQTRNAFCGPMQSSHLSAWLAHGCLSARKI----------------WSDTLA 268
Query: 419 GSSGAGSN----WLMFELLWRDFFRFITK 443
+ G+N WL FELLWR++FR+ +
Sbjct: 269 YEAREGANESTYWLRFELLWREYFRWYAR 297
>gi|302422386|ref|XP_003009023.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
gi|261352169|gb|EEY14597.1| cryptochrome DASH [Verticillium albo-atrum VaMs.102]
Length = 703
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 162/363 (44%), Gaps = 49/363 (13%)
Query: 127 IVWFRNDLRVHDNESLN----TANNESVSVLPVYCF----------------DPRDYGKS 166
I R+DLRV DN L+ + ++ +LPVY F P +S
Sbjct: 9 IYLLRHDLRVSDNPILHHLATSKDHGFTHLLPVYVFPAHQIETSGFIRDGSKSPYPEARS 68
Query: 167 SSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD----- 220
G F + GP+RA F+ +SV +L+++ Q GS L +R G+ + VL L K +
Sbjct: 69 QVGSFWRCGPHRAKFIAQSVWNLQESFQGLGSGLCLRAGRFDDVLNGLLKGLTEKQQTIG 128
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL---GEMPTNYGG 277
AV+ E + +E + E+ + + + IE K W Y +DD +L ++P +
Sbjct: 129 AVWMTLEDAVEEKRDEKAVSSICSENNIEFK-LWQDEKYFVDDRDTELENAHDLPDIFTT 187
Query: 278 FREKVKGVEIRKTIE----ALDQLKGLPSRGDVEPGDIPSLLDLGLSQ--SAAMSQV--- 328
+R+ + + R + + L PS V + P + + + +A + V
Sbjct: 188 YRKTQEPLRERPRPTLPKPSNNSLPPYPSDDVVPVQERPFEMPVTYEELEAALLKPVEDV 247
Query: 329 ------WHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKI 382
+ + + +KGGE +ALQR+ K ++G + G +FS K+
Sbjct: 248 LDDAPEYPSNATSVHPLKGGELDALQRVNHLIKSCSMSNYKNTRNG----LLGVDFSTKL 303
Query: 383 SPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFIT 442
S +LA+GCL+ R + +E+ K K DG G+ + FELLWRD+ R T
Sbjct: 304 SGYLALGCLTARQVHEEMVKYEDGQGPQYKEIDGFGNGENEGTKAVRFELLWRDYMRLCT 363
Query: 443 KKY 445
+K+
Sbjct: 364 RKF 366
>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 149/331 (45%), Gaps = 39/331 (11%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGP 175
AA SI+WFR LR+HDN +L A+ S V PV+ DP D S G G
Sbjct: 2 AASGSGSIIWFRKGLRIHDNPALEYASKGSDFVYPVFVIDPHYMEPDPKAFSPGSRLAGL 61
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL+ES+ DL +L+ GS L++ G+P VL K G + +
Sbjct: 62 NRIRFLLESLVDLDTSLKKLGSRLLILRGEPGQVLTRCLKEWGVKKLCFEYDTDPHYQAL 121
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEAL 294
+ +++ GIEV TL++ D+ + G+ P Y F K+ G + L
Sbjct: 122 DIRVKEYASAAGIEVFSPVSHTLFNPADIIQRNGGKPPLTYQSFL-KLAGQPSWASSPLL 180
Query: 295 DQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
+ LP GDV E ++P++ DLG + Q W +GGE+EAL+RLK
Sbjct: 181 TSISSLPPVGDVGSCEISEVPTIKDLGYGD---IEQEW-------IPFRGGESEALKRLK 230
Query: 352 KFAAEYQA----QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
+ ++ + + PKGN S + + +SP+L GCLS R + L+ ++
Sbjct: 231 ESISDKEWVANFEKPKGNP-----SAFVKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNV 285
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ S AG +LLWRDFF
Sbjct: 286 QKHT-----SPPVSLAG------QLLWRDFF 305
>gi|385333757|ref|YP_005887708.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
gi|311696907|gb|ADP99780.1| deoxyribodipyrimidine photolyase [Marinobacter adhaerens HP15]
Length = 440
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 147/331 (44%), Gaps = 48/331 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF DLR+HDN SL A ++S +L +Y DPR + G +R FL +S+
Sbjct: 3 TLYWFTRDLRLHDNASL-LAASKSDMLLCLYVVDPRWFAPGPLQSKAMGDHRWRFLWQSL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+ G L + G+PETV+ +LA A + V R E + I+ +
Sbjct: 62 MALERSLRPLGQRLHIAFGEPETVIPQLAHAHSIERVVRSRLPGTQEAGQWQAIKDRLPK 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR-------KTIEALDQLK 298
+ F +L+ LP L E+P + FR++V+ R +T+ AL
Sbjct: 122 AVFQQ--FETLSLFTEGSLPMALEELPDTFSQFRKQVEKTGDRCSERLRIRTLTALPPPP 179
Query: 299 GLP--SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
G P +RGD P IP + GGE L RL++F
Sbjct: 180 GFPEDNRGDCPP--IPEPVH-------------------PLQFMGGEAAGLARLQEFL-- 216
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Y K+ +++ + S K SPWLA GCLS R E+ +T T A+ N+
Sbjct: 217 YGNHSIDRYKE-TRNALDTWDASSKFSPWLANGCLSVR----EVAETITEYEASETKNE- 270
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL FELLWR++F + K+ +
Sbjct: 271 -------STYWLWFELLWREYFYWYALKHGA 294
>gi|254506014|ref|ZP_05118159.1| cryptochrome dash [Vibrio parahaemolyticus 16]
gi|219551237|gb|EED28217.1| cryptochrome dash [Vibrio parahaemolyticus 16]
Length = 412
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 141/321 (43%), Gaps = 52/321 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFLIESV 185
+ WF NDLR +N L+ A NE ++ VYC +Y + SG G +R F+ +SV
Sbjct: 7 LYWFINDLRRLNNSLLDRAINEVDELVAVYCLPHVTEYLAAFSGEHNLGTHRERFIHQSV 66
Query: 186 SDLRKNLQARGSDL-VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
DL ++L A G +L +V G + V E+ + G +Y DE I+ K
Sbjct: 67 EDLSESLAALGVELNIVEQGTTKAV-AEIIEQRGVSHLYVSEVAGFDETVMINVIK--QK 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+EV +TL+H D LPF L E+P + FR++
Sbjct: 124 FPTLEVIQSDNTTLFHSDQLPFPLDELPATFTQFRKQ----------------------- 160
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
VEP + +L A+ ++ G + GGE A+Q + Y +QP
Sbjct: 161 -VEP-----IFELLYPSQDALYRL--GEIATPTGVVGGERAAIQHV----TWYFSQPFAS 208
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
+ + + G + S SPWLA+GC+SP + L++ + +
Sbjct: 209 SYKETRNHLEGESSSTHFSPWLALGCISPAQIVALLRQYE------------QRNGANQS 256
Query: 425 SNWLMFELLWRDFFRFITKKY 445
+ W++FELLWR++F + +K+
Sbjct: 257 TYWIIFELLWREYFYWYGRKH 277
>gi|392537198|ref|ZP_10284335.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas marina mano4]
Length = 436
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 150/328 (45%), Gaps = 64/328 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR++DN + + ++ V+ +P + ++ + G + +FL++S+
Sbjct: 6 LYWLQNDLRLNDNPIFSKLALQQCALDVVFVINPNWFKNTNYQQKQYGENKYTFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--------AVYAHREVSHDEVKSEE- 237
+L++ L ARG L V G+P +VL + K D VY RE++ + E
Sbjct: 66 ELQQALIARGQTLHVLEGEPVSVLKQRIKDQHIDEVVYSEQFGVYEQREINLLKAHCPEV 125
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI-----RKTIE 292
+ ++D TLY +DLPF L ++P ++ F++KV+ I T E
Sbjct: 126 QFTGTLQD-----------TLYQQNDLPFNLTDLPKSFTPFKKKVEAANIPITLSHITTE 174
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
L + L ++ +E +P K NSM GG T A +K
Sbjct: 175 LLPKPITLCAKNPIE---LP--------------------KAVNNSMHGGLTSA----QK 207
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+Y A +++ G + + K SPWLA GC+S + +++ +++ + +A
Sbjct: 208 HCEQYFAGELPSTYKITRNALDGFDNTTKFSPWLAFGCISAKQIYNAVEQYEQTYTA--- 264
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRF 440
ND + W+ FELLWR++F++
Sbjct: 265 -ND--------STYWIKFELLWREYFKW 283
>gi|395003805|ref|ZP_10387913.1| cryptochrome, DASH family [Acidovorax sp. CF316]
gi|394318288|gb|EJE54737.1| cryptochrome, DASH family [Acidovorax sp. CF316]
Length = 452
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 142/316 (44%), Gaps = 49/316 (15%)
Query: 152 VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLV 211
++PV+C P + GF + GP+R +F ++ DL + G+ L G P VL
Sbjct: 34 LVPVHC-QPVADETTPWGFARRGPHRRAFEGAALRDLAAGMAGLGNPLRQCQGLPAAVLP 92
Query: 212 ELAKAIGADAVYAHREVSHDEVKSEEKIE-AAMKDEGIEVKYFWGSTLYHLDDLPFKLGE 270
LA+A+GA V V + +E+ E AA++ G++V+ W S+L DLP+ +G
Sbjct: 93 VLARAVGATTV-----VCEEIAAPQEQAEVAALRAAGLQVQTVWHSSLLQPCDLPWPVGA 147
Query: 271 MPTNYGGFREKVKGVEI-----------------RKTIEALDQLKGLPSRGDVEPGDIPS 313
+P + FR+ V+ I T A ++ L + G V
Sbjct: 148 LPGVFTTFRQAVEQAGIQPPQPLPAPAALLPPPAALTDAAWQEV--LHTTGAVGAAQGQG 205
Query: 314 L----LDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 369
++ G + + G PA + GGET AL ++++ A Q K ++G
Sbjct: 206 GHGDGVEAGEGAGCDVRSSFPYGTPACD---GGETAALAHVQQYLASGQPHSYKATRNG- 261
Query: 370 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 429
+ G +S K SPWLA G LS R L++ AA N+ G+ WL
Sbjct: 262 ---LTGLGYSSKFSPWLATGALSARHAMAALRR----FEAAHGANE--------GTYWLW 306
Query: 430 FELLWRDFFRFITKKY 445
FELLWRD+FR + ++
Sbjct: 307 FELLWRDYFRLLHLQH 322
>gi|389746080|gb|EIM87260.1| cryptochrome [Stereum hirsutum FP-91666 SS1]
Length = 641
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 157/368 (42%), Gaps = 49/368 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSS----------- 168
R I R DLR+ DN L+ + + +LP+Y F S S
Sbjct: 5 RILIYMLRRDLRLADNPILHHISTSRSPQYTHLLPLYIFPHNQLEVSGSVKSPFPEARSQ 64
Query: 169 --GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD------ 220
GF + GP+RA FL ES+ D+++ L+ +GS LV+RVGK V+ L I +
Sbjct: 65 VAGFWRCGPHRAKFLAESLWDVKEGLEGKGSGLVIRVGKVGEVVRGLIDVIMENEAGHVV 124
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPF-KLGEMPTNYGG 277
V+ E +E + E ++ + G+E + W Y +DD LPF + ++P +
Sbjct: 125 GVWMTGEEGQEEQREESDVKKVCEGVGVEFQ-LWRDEKYLIDDRDLPFDNIKDLPDVFTS 183
Query: 278 FREKVKGV--EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKP- 334
FR+ V+ + R T+ + L LP + P P + LSQ KP
Sbjct: 184 FRKSVEPLNSRSRHTLPTPNSLPLLPPSSLIAPQAYPFTIPTSLSQLIEALYKPLIAKPD 243
Query: 335 ---------------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFS 379
+ + GG T R+K K ++G + G ++S
Sbjct: 244 HAMPDPTSTPPHPITSGHPFTGGATTGHSRIKHLITSSAMTNYKQTRNG----LLGEDYS 299
Query: 380 CKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 439
K+S WLA+GC++ R + + L K K G G+ W+ FELLWRD+ R
Sbjct: 300 TKLSAWLALGCITARQVHEYLVKLEEGSDELGKNAKGWGKGINEGTGWVRFELLWRDYMR 359
Query: 440 FITKKYSS 447
+K++S
Sbjct: 360 LCARKFNS 367
>gi|322694523|gb|EFY86350.1| Putative cryptochrome DASH [Metarhizium acridum CQMa 102]
Length = 702
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 160/365 (43%), Gaps = 53/365 (14%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVS-VLPVYCFD----------------PRDYGKS 166
+ R DLRV DN L TA++ + +LPVY F P KS
Sbjct: 8 VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFSAQQVELSGFLKDGEQSPYPPAKS 67
Query: 167 SSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----AD 220
G F + GP+RA F E+V +L+++L+ GS LV+R G + V+ L K +
Sbjct: 68 QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVVDHLVKELKDAVPCVS 127
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL------PFKLGEMPTN 274
+V+ E S +EV+ +E I + +GIE + W Y +DD P L ++ T
Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSQQGIEFE-LWKDEKYFVDDRDTGLESPADLPDVFTT 186
Query: 275 YGG----FREKVKGVEIR---KTIEALDQLKGLPSRGDVEPGDIP-SLLDLGLSQSAAMS 326
Y REK + V R ++ A + + +P++ P P SL DL +
Sbjct: 187 YRKSQEPLREKPRKVLPRPAKSSLPAFPEEESIPAQ--AHPFVSPVSLEDLQKRLVKPLE 244
Query: 327 QVWHG--GKPA----ANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSC 380
+ +P + GGET RL+ K ++G + G ++S
Sbjct: 245 HIMDNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNG----LVGVDYSL 300
Query: 381 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
K+S +L++GCL+ R + +EL K K G G+ + FELLWRD+ R
Sbjct: 301 KLSAYLSLGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLWRDYMRL 360
Query: 441 ITKKY 445
T K+
Sbjct: 361 CTAKF 365
>gi|346970183|gb|EGY13635.1| cryptochrome DASH [Verticillium dahliae VdLs.17]
Length = 700
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 159/372 (42%), Gaps = 67/372 (18%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVS-VLPVYCF----------------DPRDYGKS 166
I R+DLRV DN L T + + +LPVY F P +S
Sbjct: 9 IYLLRHDLRVSDNPILHHLATCKDHGFTHLLPVYVFPAHQIETSGFIRDGSKSPYPEARS 68
Query: 167 SSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----AD 220
G F + GP+RA F+ +SV +L+++ Q GS L +R G+ + VL L K +
Sbjct: 69 QVGSFWRCGPHRAKFIAQSVWNLQESFQGLGSGLCLRAGRFDDVLNGLLKGLSEKQQTVG 128
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL---GEMPTNYGG 277
AV+ E + +E + E+ + + + IE K W Y +DD +L ++P +
Sbjct: 129 AVWMTLEDAVEEKRDEKAVSSICSENNIEFK-LWQDEKYFVDDRDTELENAHDLPDIFTT 187
Query: 278 FREKVKGVEIRKTIEALDQLKG----LPSRGDVEP---GDIPSLLDLGLSQSAAMSQV-- 328
+R KT E L + PS G + P D+ + + A ++
Sbjct: 188 YR---------KTQEPLRERPRPTLPKPSNGSLPPYPSDDVVPVQEKPFEMPATYEELEA 238
Query: 329 ---------------WHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSI 373
+ + + +KGGE +ALQR+ K ++G +
Sbjct: 239 ALLKPVKDVLDDAPEYPSEATSVHPLKGGEVDALQRVDHLIKSCSMSNYKNTRNG----L 294
Query: 374 YGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 433
G +FS K+S +LA+GCL+ R + +E+ K K +G G+ + FELL
Sbjct: 295 LGVDFSTKLSGYLALGCLTARQVHEEMVKYEDGQGLEYKEIEGFGNGENEGTKAVRFELL 354
Query: 434 WRDFFRFITKKY 445
WRD+ R T+K+
Sbjct: 355 WRDYMRLCTRKF 366
>gi|254227923|ref|ZP_04921353.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|262396094|ref|YP_003287947.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
Ex25]
gi|151939419|gb|EDN58247.1| Deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|262339688|gb|ACY53482.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
Ex25]
Length = 444
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 147/325 (45%), Gaps = 40/325 (12%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLR+HDN L A E ++ +YC Y + + G + FL
Sbjct: 3 KKIGLYWFTNDLRLHDNPLLIDACAEMDELICLYCRPSVTPYLQHFAQETSLGRAKLQFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+++L ++L G L P + G +YA DE ++ +E
Sbjct: 63 EASLNELNQSLAKLGQRLWTVELTPYQAIKYAISHFGITHIYADAFAGSDE---QQALER 119
Query: 242 AMKDE-GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
A+K + +K TL + LPF+L ++P + FR++V+G+++ + E++ L +
Sbjct: 120 AIKGTPHVNIKQQAIRTLLREEQLPFELRQLPATFTKFRKQVEGLDLSQPYESVHALPPV 179
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
PS G++ A + + KP + GGE L+ +++ A A
Sbjct: 180 PS---------------GMNFPTATT-YYFDTKPVFD---GGELSGLEHCRRYFASSLAS 220
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K + + + G +S K SPWLA GC+SP ++ LK+ A ND
Sbjct: 221 EYKQTR----NELDGMEYSTKFSPWLAHGCVSPTIIYAMLKQYEQKNGA----ND----- 267
Query: 421 SGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + +KY
Sbjct: 268 ---STYWIYFELLWREYFYWYARKY 289
>gi|333893078|ref|YP_004466953.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2]
gi|332993096|gb|AEF03151.1| deoxyribodipyrimidine photolyase [Alteromonas sp. SN2]
Length = 437
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 148/330 (44%), Gaps = 31/330 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR+DLR HD +L++ + + +Y D + +S G G +R +FLI+++
Sbjct: 18 LFWFRHDLRFHDQVALSSLCQQVDELTLLYIIDDSWFVPNSYGIQPVGEHRFNFLIDTIE 77
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK-D 245
L + G ++ G+ +LV L + ++A H ++EA +
Sbjct: 78 ALNEKASTLGHSILTLRGQTPELLVSL---LSSNAFTHFGVTEHGGYNERREVEAVSRFF 134
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
IE+ S+L++ DDLPF L MP + F+ K++ K E + L LP
Sbjct: 135 PNIEIVTGESSSLFNQDDLPFNLEVMPDVFTPFKRKIESA--IKPREPMATLTALPR--S 190
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
P DI + L++ +Q A + GGE L L + E++ +
Sbjct: 191 YTP-DIDAECQYTLNRRPPRNQ-------AEGTFVGGEDAVLSHLNSYLFEWKV---AAS 239
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
+++ S K+SPWLA G LS R + E+KK ++ ND +
Sbjct: 240 YKETRNALDNWRDSTKLSPWLATGALSARYVIQEVKKYEQNVVK----ND--------ST 287
Query: 426 NWLMFELLWRDFFRFITKKYSSAKKVVEAV 455
W+ FELLWR++F ++ +K+ S +E +
Sbjct: 288 YWIYFELLWREYFYWLQQKFGSKWFQLEGI 317
>gi|410626719|ref|ZP_11337472.1| cryptochrome DASH [Glaciecola mesophila KMM 241]
gi|410153820|dbj|GAC24241.1| cryptochrome DASH [Glaciecola mesophila KMM 241]
Length = 433
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 149/325 (45%), Gaps = 36/325 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ + WFR+DLR+HDN +L + + +L V+ DPR + S G R +FL +
Sbjct: 10 KRGLFWFRHDLRLHDNPALVALSEQVDELLCVFIIDPRWFKSSHFQSAHMGDKRWAFLQQ 69
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+S+L+ NLQ +G L V G+ VL L + + V + E + ++++
Sbjct: 70 SLSNLQDNLQQQGHQLFVLEGETLEVLDALVGSYTPNIVASGMHPGVYERQQWQRLKQKQ 129
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
D + +L+ D LPF++ +P ++ FR++V+ + + A
Sbjct: 130 PDVHFIQEN--AHSLFQPDTLPFEIEFLPASFTPFRKRVEDQSVALALPA--------PT 179
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK-KFAAEYQAQPP 362
D+P L S++ +++ K GGE L +L+ + +
Sbjct: 180 ALPPAPDLPWL----SSKNMDLTK-----KATGLVFTGGEDAGLAQLEYTLFTSHNIKNY 230
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++G + G ++S K+SPWLA GCLS R + EL + + ND
Sbjct: 231 KQTRNG----LDGWDYSSKLSPWLANGCLSVRQVLTELTRYESEYEK----ND------- 275
Query: 423 AGSNWLMFELLWRDFFRFITKKYSS 447
+ WL FELLWR++F++ KY S
Sbjct: 276 -STYWLYFELLWREYFQWHLFKYQS 299
>gi|322709598|gb|EFZ01174.1| Putative cryptochrome DASH [Metarhizium anisopliae ARSEF 23]
Length = 695
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 150/371 (40%), Gaps = 65/371 (17%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVS-VLPVYCF----------------DPRDYGKS 166
+ R DLRV DN L TA++ + +LPVY F P +S
Sbjct: 8 VYLLRRDLRVADNPILHHLATASDHGFTHLLPVYVFPAQQVELSGFLKDGEQSPYPPARS 67
Query: 167 SSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----AD 220
G F + GP+RA F E+V +L+++L+ GS LV+R G + V L +
Sbjct: 68 QVGKFWRCGPHRAKFTAEAVWNLKRSLEELGSGLVIRCGSVKDVFDHLVNELKDAVPCVS 127
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDL------PFKLGEMPTN 274
+V+ E S +EV+ +E I + GIE K W Y +DD P L ++ T
Sbjct: 128 SVWMTEEPSWEEVQEQESISSLCSKRGIEFK-LWKDEKYFVDDRDTGLENPADLPDVFTT 186
Query: 275 YGG----FREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWH 330
Y REK + V R AL P G + P L + L
Sbjct: 187 YRKSQEPLREKPRKVLPRPAKSAL---PAFPQEGSIPAQAHPFLSPVSLEDLQKRLV--- 240
Query: 331 GGKPAANSMK----------------GGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIY 374
KP N M GGET RL+ K ++G +
Sbjct: 241 --KPVENIMDNPPKRPEDATDGHPFTGGETSGWARLRHLGKSSAMTSYKDTRNG----LV 294
Query: 375 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 434
G ++S K+S +L++GCL+ R + +EL K K G G+ + FELLW
Sbjct: 295 GVDYSLKLSGYLSLGCLTARQIHEELLKLEDGTDEQYKDAVGYGEGENDGTKGIRFELLW 354
Query: 435 RDFFRFITKKY 445
RD+ R T K+
Sbjct: 355 RDYMRLCTAKF 365
>gi|336465318|gb|EGO53558.1| hypothetical protein NEUTE1DRAFT_92963 [Neurospora tetrasperma FGSC
2508]
Length = 740
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 168/398 (42%), Gaps = 88/398 (22%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN-TANNES----VSVLPVYCF----------------D 159
A + I R +LR+ DN + AN ES +LPVY F +
Sbjct: 2 AQSKVVIYAMRRELRLSDNPIFHHLANPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSEN 61
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
P KS+ G+ + GPYRA FL ESV DL+ +LQ+ GSDL+VR G + V+ L + +
Sbjct: 62 PHPAPKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIKSLVEGLK 121
Query: 219 AD--AVYAHREVSHD--EVKSEEKIEAAM-KDEGIEVKYFWGSTLY----------HLDD 263
A V A SH+ E KS+EK A+ GI+ K W Y HL+D
Sbjct: 122 AKECQVGAVWMTSHEGSEEKSDEKTVASFCAKSGIDFK-LWDDEKYLIHDRDTGITHLND 180
Query: 264 LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ--LKGLPSRGDVEPGDIPSLLDLGL-- 319
LP ++ T Y RK IE L + K LP E G +P+ LD +
Sbjct: 181 LP----DVFTTY------------RKQIEPLREKARKTLPV---PEKGALPAYLDTDMIP 221
Query: 320 SQSAAMS-------QVWHGGKPAANSMK----------------GGETEALQRLKKFAAE 356
SQ A + V +P N +K GGET A +R+
Sbjct: 222 SQQAPFNIPGTCEELVDAVVRPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVMS 281
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
+ K +++G + G +FS K+S +LA GC++ R + L K DG
Sbjct: 282 GGMKSYKDSRNG----LLGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADG 337
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEA 454
G+ + ELLWRD+ R +KY VE
Sbjct: 338 FGEGDNQGTETVRMELLWRDYMRLCHQKYGDKLFRVEG 375
>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
Length = 633
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 148/342 (43%), Gaps = 66/342 (19%)
Query: 111 HRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKS 166
HRP PN A S++WFR LR+HDN +L A ES V PV+ DP D
Sbjct: 139 HRPNSPNPSMASGSGSLMWFRKGLRIHDNPALQHAAMESNCVYPVFVIDPYFMEPDPNAF 198
Query: 167 SSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226
S G + G R FL+ES+ DL +L+ GS L+V G P V+++ K A A
Sbjct: 199 SPGSSRAGLNRIRFLLESLVDLDSSLRQLGSRLLVLKGDPGEVIIQCLKKNYASAA---- 254
Query: 227 EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV 285
GIEV TL+ D+ K G P +Y F K+ G
Sbjct: 255 --------------------GIEVFSPVSHTLFDSADIIQKNGGRPPLSYQSFL-KLAGQ 293
Query: 286 EIRKTIEALDQLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGG 342
+ L LP GDV E ++P++ +LG + G+ KGG
Sbjct: 294 PSWASSPLSTTLSWLPPVGDVGTCEISNVPTVKELGYEEI---------GQDELTPFKGG 344
Query: 343 ETEALQRL------KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 396
E+EAL+RL K + A ++ PKG+ S + + +SP+L GCLS R
Sbjct: 345 ESEALKRLRESIRDKDWVANFEK--PKGDP-----SAFLKPATTVLSPYLKFGCLSSRYF 397
Query: 397 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ L ++ + +S S L+ +LLWRDFF
Sbjct: 398 YQCLTDVYKNV---------KRHTSPPVS--LVGQLLWRDFF 428
>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
Length = 600
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 131/284 (46%), Gaps = 28/284 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFR LR+HDN +L A S +V P++ DP KS+ +K G R FL+ES+
Sbjct: 51 SILWFRKGLRLHDNPALRDACTGSAAVFPIFIIDPYFLQKSN---NKVGVNRYQFLLESL 107
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
SDL +L + GS L+V G PE V+ + + + + + +++ ++
Sbjct: 108 SDLNSSLTSLGSQLLVLRGTPEEVIPRVLRDWSIKKLCYEIDTEPYAKARDARVDDMARE 167
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLK------ 298
G+EVK W TLY D L + G+ P F + V V T +
Sbjct: 168 AGVEVKKHWSHTLYDTDMLVRENKGKAPLTMQAFEKLVDRVGHPLTALPAPTARLPPVDV 227
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA--AE 356
LP D E G +P+ ++G ++ P A KGGETEAL+RL+ + +
Sbjct: 228 SLPGIKDAEVG-VPTWQEMGFKEA-----------PTA-IFKGGETEALKRLEHYMKDTK 274
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL 400
+ A K + D S + + +SP+L GCLS R L
Sbjct: 275 WXASFEKPSTD---PSAFTEPSTTALSPYLKFGCLSARFFHQRL 315
>gi|350295611|gb|EGZ76588.1| cryptochrome [Neurospora tetrasperma FGSC 2509]
Length = 740
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 168/398 (42%), Gaps = 88/398 (22%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN-TANNES----VSVLPVYCF----------------D 159
A + I R +LR+ DN + AN ES +LPVY F +
Sbjct: 2 AQSKVVIYAMRRELRLSDNPIFHHLANPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSEN 61
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
P KS+ G+ + GPYRA FL ESV DL+ +LQ+ GSDL+VR G + V+ L + +
Sbjct: 62 PHPAPKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIKSLVEGLK 121
Query: 219 AD--AVYAHREVSHD--EVKSEEKIEAAM-KDEGIEVKYFWGSTLY----------HLDD 263
A V A SH+ E KS+EK A+ GI+ K W Y HL+D
Sbjct: 122 AKECQVGAVWMTSHEGSEEKSDEKTVASFCAKSGIDFK-LWDDEKYLIHDRDTGITHLND 180
Query: 264 LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ--LKGLPSRGDVEPGDIPSLLDLGL-- 319
LP ++ T Y RK IE L + K LP E G +P+ LD +
Sbjct: 181 LP----DVFTTY------------RKQIEPLREKARKTLPV---PEKGALPAYLDTDMIP 221
Query: 320 SQSAAMS-------QVWHGGKPAANSMK----------------GGETEALQRLKKFAAE 356
SQ A + V +P N +K GGET A +R+
Sbjct: 222 SQQAPFNIPGTCEELVDAVVRPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVMS 281
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
+ K +++G + G +FS K+S +LA GC++ R + L K DG
Sbjct: 282 GGMKSYKDSRNG----LLGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADG 337
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEA 454
G+ + ELLWRD+ R +KY VE
Sbjct: 338 FGEGDNQGTETVRMELLWRDYMRLCHQKYGDKLFRVEG 375
>gi|120553261|ref|YP_957612.1| DNA photolyase FAD-binding subunit [Marinobacter aquaeolei VT8]
gi|120323110|gb|ABM17425.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Marinobacter aquaeolei VT8]
Length = 440
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 144/329 (43%), Gaps = 49/329 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF DLR+HDN +L A + +L V+ DPR + G +R FL +S+
Sbjct: 3 TLYWFTRDLRLHDNPALLAAARSDM-LLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQSL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+ G L + G+PE VL ELA+ G + R +E + ++ + +
Sbjct: 62 MALERSLRPMGQRLHIAWGEPEVVLPELAREHGVQRLIRSRLPGTEEAAQWQALKTRLPE 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE-----IR-KTIEALDQLKG 299
+ + F ++ LP +L E+P + FR++V+ E +R +T+ AL G
Sbjct: 122 --VTFQQFETLGMFAEGQLPMELAELPDTFSQFRKQVEKAEQPDHTLRIRTVSALPPPPG 179
Query: 300 LP--SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS-MKGGETEALQRLKKFAAE 356
P +RG P IP +P S GGE L +L+ F
Sbjct: 180 FPEDNRGQCPP--IP--------------------EPIHRSPFTGGEEAGLAQLQAFVF- 216
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q N +++ S K SPWLA GCLS R + +++ + ND
Sbjct: 217 --GQHRIANYKETRNALDDWGSSSKFSPWLANGCLSAREVVAAIEQYERQHTR----ND- 269
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ WL FELLWR++F + K+
Sbjct: 270 -------STYWLWFELLWREYFYWYALKH 291
>gi|163803660|ref|ZP_02197523.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
gi|159172532|gb|EDP57394.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
Length = 446
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 143/327 (43%), Gaps = 46/327 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRASFL 181
+ + WF N+LR+HDN L + ++ +YC+ P+ + + + G + FL
Sbjct: 4 KIGLYWFTNELRIHDNPLLAEVDKAVSELICIYCY-PKLPPFLTHFAQEAQFGQNKLRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ L +L AR L V P + + + +Y DE +KI +
Sbjct: 63 DESLHCLNLSLNARNQRLQVVDLLPYQAIKHAIEKLDVTHLYCDAFSGVDEQDVIDKIRS 122
Query: 242 AMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
I EV+ +L+ LDDLPF L +P + FR+ V+ + + K + + L
Sbjct: 123 DFPHLTICQREVR-----SLFALDDLPFSLENLPGTFTKFRKLVEKLPVSKPVATVSSLP 177
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
+P E +P+L +G +S + GGE L+ +++ +
Sbjct: 178 PIP-----EGLALPTLRLIGDGKSYLFN--------------GGEQAGLEHCQQYFSSIS 218
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
A K ++G + G +S K SPWLA GCLSP+ + L + A ND
Sbjct: 219 ASDYKQTRNG----LDGMEYSTKFSPWLAHGCLSPKVICAMLSRYEHVNGA----ND--- 267
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + +KY
Sbjct: 268 -----STYWIYFELLWREYFYWYARKY 289
>gi|326793764|ref|YP_004311584.1| DASH family cryptochrome [Marinomonas mediterranea MMB-1]
gi|326544528|gb|ADZ89748.1| cryptochrome, DASH family [Marinomonas mediterranea MMB-1]
Length = 458
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 141/333 (42%), Gaps = 48/333 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYG----------KSSSGFDKTG-- 174
I+WF +DLR++DN L A+ E ++ +YC P D + S FD T
Sbjct: 5 IIWFGDDLRINDNSLLYQASREVDRLICLYCSSPDDNNVDNSDPIRSSNTPSTFDNTSIK 64
Query: 175 --PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE 232
+R F DL +L+ + L V + L +Y H +E
Sbjct: 65 PSEHRTLFRHMGALDLDHSLRRLHNKLWVSSKNASATIEFLVSKYPITHIYRHHHAGINE 124
Query: 233 VKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE 292
+ K++A D +Y G TL+ LPF L E+P ++ FR+ V+ +++ KTI+
Sbjct: 125 ATTLTKLQARYTDIRWITEY--GLTLFSRHALPFSLNELPESFTKFRKLVETIDVPKTIK 182
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
A+D+L P ++ ++ + G P GGE+ A L
Sbjct: 183 AVDRLPP------------PVAINSPYVKTLPHTSFALDGSP----FVGGESYAHAHLAD 226
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ + A K ++ D + S K SPWLA G +SPR + + L + +
Sbjct: 227 YFSSGAASTYKETRNTMDDWMS----STKFSPWLAQGAISPRQVMNSLAFYESRM----- 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
S + W+ FELLWR++F++ + KY
Sbjct: 278 -------GSNDSTYWIYFELLWREYFQWYSMKY 303
>gi|413955018|gb|AFW87667.1| hypothetical protein ZEAMMB73_818499 [Zea mays]
Length = 404
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 118/246 (47%), Gaps = 44/246 (17%)
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGI--------------EVKYFWGSTLYHLDDLPFK 267
+YAH+E +E+ E + ++ I ++ WG+T+YH+DDLPF
Sbjct: 5 IYAHKETCSEELLVERLVSKGLEQVQIAQGGASVPKRPLNPRLQLIWGATMYHIDDLPFP 64
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP----GDIPSLLDLGLSQSA 323
+ +P Y FR+ V+ + L G P ++ G +P+L LG S +
Sbjct: 65 VSSLPDVYTQFRKAVESKCSVRNCAKLPTSLGPPPSSSIDEIGGWGTVPTLESLGPSVTK 124
Query: 324 AMSQVWHGGKPAANSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKI 382
+ + GGE+ AL R+ + F + Q + K ++G + G ++S K
Sbjct: 125 SEKGM---------HFIGGESAALGRVHEYFWKKDQLKDYKVTRNG----MLGPDYSTKF 171
Query: 383 SPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFIT 442
SPWLA G LSPR + +E+K+ A ND + W++FEL+WRD+FRF++
Sbjct: 172 SPWLASGSLSPRYICEEVKRYEKQRVA----ND--------STYWVLFELIWRDYFRFLS 219
Query: 443 KKYSSA 448
KY +A
Sbjct: 220 AKYGNA 225
>gi|126665353|ref|ZP_01736335.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
gi|126629981|gb|EBA00597.1| Deoxyribodipyrimidine photolyase [Marinobacter sp. ELB17]
Length = 441
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 141/326 (43%), Gaps = 38/326 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF DLR+HDN +L A ++S +L VY +PR + G +R FL +S+
Sbjct: 3 TLYWFTRDLRLHDNAAL-LAASKSDMLLCVYVVEPRWFKPGPLQCKTMGHHRWRFLWQSL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+A G L + G PETV+ LA + R+ E + ++ +
Sbjct: 62 IGLERSLRALGQRLHIAWGDPETVIPALAHGHVISRIVRSRQPGTREAVQWQTLQDKLPK 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV--KGVE--IRKTIEALDQLKGLP 301
I + L+ LP L ++PT + FR+ + KG R I L L P
Sbjct: 122 --IAFTQYETLGLFTESLLPMPLQDLPTTFSQFRKLIEKKGDRGPSRLRIPTLKMLPPAP 179
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
D G+ P++ Q Q + +GGE L RL+ F A A
Sbjct: 180 GLPDDNRGECPAI------QEPTQPQ----------AFRGGEQAGLARLQDFLAGTHA-- 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+++ N S K SPWLA GCLS R + D SIS + +S
Sbjct: 222 -IDTYKETRNALDDWNSSSKFSPWLAHGCLSAREVAD-------SISLYE-----QQHTS 268
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ WL FE+LWR++F + ++ S
Sbjct: 269 NESTYWLWFEVLWREYFYWYALRHGS 294
>gi|359447933|ref|ZP_09237491.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20480]
gi|358046252|dbj|GAA73740.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20480]
Length = 436
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 149/328 (45%), Gaps = 64/328 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR++DN + + ++ V+ +P + ++ + G + +FL++S+
Sbjct: 6 LYWLQNDLRLNDNPIFSKLALQQCALDVVFVINPNWFKNTNYQQKQYGENKYTFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--------AVYAHREVSHDEVKS-EE 237
+L++ L A G L V G+P +VL + K D VY RE++ + E
Sbjct: 66 ELQQALIACGQTLHVLEGEPVSVLKQRIKEQHIDEVVYSEQFGVYEQREINLLKAHCPET 125
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI-----RKTIE 292
+ ++D TLY +DLPF L ++P ++ F++KV+ I T E
Sbjct: 126 QFTGTLQD-----------TLYQQNDLPFNLTDLPKSFTPFKKKVEAANIPITLSHITTE 174
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
L + L ++ +E +P K NSM GG T A +K
Sbjct: 175 LLPKPITLCAKNPIE---LP--------------------KAVNNSMHGGLTSA----QK 207
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+Y A +++ G + + K SPWLA GC+S + +++ +++ + +A
Sbjct: 208 HCEQYFAGELPSTYKITRNALDGFDNTTKFSPWLAFGCISAKQIYNAVEQYEQTYTA--- 264
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRF 440
ND + W+ FELLWR++F++
Sbjct: 265 -ND--------STYWIKFELLWREYFKW 283
>gi|387812715|ref|YP_005428192.1| Deoxyribodipyrimidine photolyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381337722|emb|CCG93769.1| Deoxyribodipyrimidine photolyase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 440
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 146/329 (44%), Gaps = 49/329 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF DLR+HDN +L A + +L V+ DPR + G +R FL +S+
Sbjct: 3 TLYWFTRDLRLHDNPALLAAARSDM-LLCVFVVDPRWFTGDRFQCRALGDHRWRFLWQSL 61
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+ G + + G+PE VL ELA+ G + R +E + ++A + +
Sbjct: 62 MALERSLRPLGQRMHIAWGEPEIVLPELAREHGVQRLIRSRLPGTEEAAQWQALKARLPE 121
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVE-----IR-KTIEALDQLKG 299
+ + F ++ LP +L E+P + FR++V+ E +R +T+ AL G
Sbjct: 122 --VTFQQFETLGMFTEGQLPMELAELPDTFSQFRKQVEKAEQPDYTLRIRTVSALPPPPG 179
Query: 300 LP--SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS-MKGGETEALQRLKKFAAE 356
P +RG P IP +P S GGE L +L+ F
Sbjct: 180 FPEDNRGQCPP--IP--------------------EPIHRSPFTGGEEAGLAQLQAFVF- 216
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q + +++ + S K SPWLA GCLS R + +++ + ND
Sbjct: 217 --GQHRIADYKETRNALDDWDSSSKFSPWLANGCLSVREVVAAIEQYERQHTR----ND- 269
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ WL FELLWR++F + K+
Sbjct: 270 -------STYWLWFELLWREYFYWYALKH 291
>gi|359435159|ref|ZP_09225386.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20652]
gi|357918200|dbj|GAA61635.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20652]
Length = 439
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 141/314 (44%), Gaps = 33/314 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN L+ E ++ V+ +P + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRIDDNPILSELATEQCALDIVFVINPHWFKNNNYQQKPYGVHKQQFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ L RG L V G+P +VL + D V V E + +++A
Sbjct: 66 ALQQALIERGQTLHVLEGEPVSVLKQRIAEQHIDEVVCSELVGTYEQRQLARLKAHCPH- 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ K TL+ DLPF L E+P ++ FR+KV+ V I TI L KGL
Sbjct: 125 -VIFKTTQQDTLFKQSDLPFDLNELPKSFTPFRKKVEAVNIPITISTLP--KGL------ 175
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
+P + L + +++ H A M GG A LK++ + P K
Sbjct: 176 ----LPQPITLCAANPIELNE--HTNYNNA-IMHGGFKSAQTHLKQY---FSGLLPSTYK 225
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
+ + G N + K S WLA GC+S R ++ +++ S + +
Sbjct: 226 T-TRNELDGFNNTTKFSTWLAFGCVSARQVYKAVEQYE------------HSQITNESTY 272
Query: 427 WLMFELLWRDFFRF 440
W+ FELLWR++F++
Sbjct: 273 WIKFELLWREYFKW 286
>gi|119471065|ref|ZP_01613624.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
gi|119445905|gb|EAW27186.1| Deoxyribodipyrimidine photolyase [Alteromonadales bacterium TW-7]
Length = 436
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 151/328 (46%), Gaps = 64/328 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR++DN + + ++ V+ +P + ++ + G + +FL++S+
Sbjct: 6 LYWLKNDLRLNDNPIFSKLALQQCALDVVFVINPNWFKNTNYQQKQYGENKYTFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--------AVYAHREVSHDEVKSEE- 237
+L++ L ARG L V G+P +VL + K D VY RE++ + +
Sbjct: 66 ELQQALIARGQTLHVLEGEPVSVLKQRIKEQHIDEVVYSEQFGVYEQREINLLKAHCPQI 125
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI-----RKTIE 292
+ ++D TLY ++LPF L ++P ++ F++KV+ I T E
Sbjct: 126 QFTGTLQD-----------TLYQQNELPFNLTDLPKSFTPFKKKVEAANIPITLSHITTE 174
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
L + L ++ +E +P ++ NSM GG T A +K
Sbjct: 175 LLPKPITLCAKNPIE---LPKAIN--------------------NSMHGGLTSA----QK 207
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+Y A +++ G + + K SPWLA GC+S + +++ +++ + +A
Sbjct: 208 HCEQYFAGELPSTYKITRNALDGFDNTTKFSPWLAFGCISAKQIYNAVEQYEQTYTA--- 264
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRF 440
ND + W+ FELLWR++F++
Sbjct: 265 -ND--------STYWIKFELLWREYFKW 283
>gi|88704316|ref|ZP_01102030.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
gi|88701367|gb|EAQ98472.1| Deoxyribodipyrimidine photolyase [Congregibacter litoralis KT71]
Length = 434
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 144/313 (46%), Gaps = 40/313 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFRNDLR+HDN L A +L R + + G R F+ ES+
Sbjct: 3 AIYWFRNDLRLHDNPGLVEAAKADELLLLYLWPLQRAWCNTQG----LGEQRERFITESL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L+ +LQ G L+V G PE V+ +L + G DAV+A + E ++ + +
Sbjct: 59 KALQDDLQPLGQSLLVLQGSPELVIPDLVRDYGVDAVHASQCAGSYETRAVRVLRERLH- 117
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
I V G+TL+ D+ E+P ++ FR KV+ K +E L + LP
Sbjct: 118 --IPVTEHAGNTLFRRSDIKALCPELPRSFSPFRRKVE-----KNLEPLKPSRDLPQ--- 167
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
+ P P + AA+ P ++GG + +RLK+F + K
Sbjct: 168 LPP---PPAVTFHRIPDAAVK------PPVGLPLRGGSSAGQRRLKQFLHSGAIRSYKET 218
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
++ D + G S +SPWLA+G LS R ++AA ++ + G++ + +
Sbjct: 219 RN-CLDPLEG---SSTLSPWLALGSLSAR-----------EVAAAVHEHEAQEGANES-T 262
Query: 426 NWLMFELLWRDFF 438
WL+FELLWR++F
Sbjct: 263 YWLVFELLWREYF 275
>gi|348029288|ref|YP_004871974.1| deoxyribodipyrimidine photolyase [Glaciecola nitratireducens
FR1064]
gi|347946631|gb|AEP29981.1| Deoxyribodipyrimidine photolyase [Glaciecola nitratireducens
FR1064]
Length = 434
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 153/332 (46%), Gaps = 49/332 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDK---TGPYRAS 179
++ I WFR DLR+ DN SL + ++ ++ VY + + S + +K G +R +
Sbjct: 3 KKVGIHWFRKDLRIQDNASLASIASQVDELVCVYLYQGQTSPNSVAIDNKDEAIGKHRIN 62
Query: 180 FLIESVSDLRKNLQARGSDLVVR-VGKPETV--LVELAKAIGADAVYAHREVSHDEVKSE 236
F+ +S+ L+ L L++ V ++ L++L + A V A +E
Sbjct: 63 FINQSLIQLQDALNGLNQRLIILPVNGSSSLQQLLDLVDELNATHVSAEWHCGFNERLQW 122
Query: 237 EKIEAAMKDEGIEVKYFW--GSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEA 293
+ ++ +K+ V++ STLY + PF + MP + FR+K+ K E++ E
Sbjct: 123 QALQDTLKESAPNVQFIQENSSTLYDISQFPFSVENMPGTFSPFRKKLEKYCEVKSVAEK 182
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS----MKGGETEALQR 349
L L P + DL L +S S + AN+ + GGE A ++
Sbjct: 183 LHSL--------------PRMSDLTLEKSMCSSTL-----AVANNHYPKLAGGELSAHKQ 223
Query: 350 LKKFAAEY-QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
L+ + K ++G + G +FS K+S WL++GC+S R +F ELK S
Sbjct: 224 LEYYLWNTDHISKYKETRNG----LDGWDFSSKLSAWLSIGCVSARQVFAELKNYE---S 276
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
A K ND + WL FELLWR+FF +
Sbjct: 277 ARVK-ND--------STYWLFFELLWREFFHW 299
>gi|260220872|emb|CBA28873.1| hypothetical protein Csp_A09310 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 468
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 159/351 (45%), Gaps = 50/351 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESV 185
I WFR+D+R+ DN + A VL V F P + ++ G P R ++ +V
Sbjct: 24 IYWFRSDMRLQDNPAWTRACAMGRPVLAV-TFAPVLSAREAAWGIPGLSPSRKAWWAATV 82
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE-AAMK 244
+LR+ L A G L+V G LV L +A GA A+ V + E+ + ++++
Sbjct: 83 QELRRELDALGVSLLVLRGGSMEALVRLFEASGAVAL-----VCEEIAAPYERAQLSSLR 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI--RKTIEALDQLKGLPS 302
GI V W TL+ +DLPF + ++P + FR +V+ ++ R + A + G
Sbjct: 138 ASGIVVHSVWQGTLFKAEDLPFSVTDLPGVFTRFRNEVERAKVPFRTPLPAPVNVTGY-- 195
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQV--------WHGGKPAAN-------SMKGGETEAL 347
D+ D S + + +AA V W G AN + G
Sbjct: 196 --DLAC-DAVSFAEDFVDGAAAGKFVADPRSAFQWRSGSSGANDEVLHLDEVLAGSGGGH 252
Query: 348 QRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
L+ + + K ++G + G +S K SPWLA+G +S A +
Sbjct: 253 AYLQHYLESGRVAQYKATRNG----LTGMAYSSKWSPWLALGAVS-----------APEL 297
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA----KKVVEA 454
AA K ++ E G++ GS WL FELLWRD+FR++ +Y + K ++EA
Sbjct: 298 MAALKAHEREHGTTD-GSYWLWFELLWRDYFRWLHLQYGAGLYRPKGLLEA 347
>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 559
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 157/367 (42%), Gaps = 82/367 (22%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LRVHDN +L A ++ +V P++ DP S + G R FL++S+
Sbjct: 10 SIHWFRKGLRVHDNPALVDACADATAVQPIFVLDPWFLTPS-----RVGANRVRFLLQSL 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DL +L+ARGS L+V G P+ V+ +A G D + + + + A K
Sbjct: 65 TDLDASLRARGSSLLVLRGDPKAVVPAALRAWGCDRLTHEVDTEPYASARDAAVRDAAKR 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKL--GEMPTNYGGFREKVKG------------------- 284
G EVK F TLY ++ L K G PT+Y F K+ G
Sbjct: 125 VGAEVKTFASHTLYDMERLLSKCPKGAPPTSYASFL-KIAGSCGAVAKPAPPPPASMPGS 183
Query: 285 VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGET 344
+ + +E + ++ + S +V +P+L +LG + G PA +GGET
Sbjct: 184 PDGKSHVELVAMIEDVVSSAEV---GVPTLEELGYPELPDDE-----GFPA----RGGET 231
Query: 345 EALQRLKK------FAAEYQ----------------------AQPPKGNKDGNHDSIYGA 376
E L RL++ + AE+Q A P + + GA
Sbjct: 232 EGLDRLRRMLSRKTWIAEFQKPMTSPTSLWAVVGADGKTQKPANPFEAASKASKSKTVGA 291
Query: 377 NF-----SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFE 431
+ +SP+L GC+SPR+ + ELK ND + G A L +
Sbjct: 292 EAFLAPSTTALSPYLKFGCVSPRTFYHELKDVL---------NDAK-GKHSAPPVSLEGQ 341
Query: 432 LLWRDFF 438
LLWR+F+
Sbjct: 342 LLWREFY 348
>gi|417949759|ref|ZP_12592890.1| deoxyribodipyrimidine photolyase [Vibrio splendidus ATCC 33789]
gi|342807637|gb|EGU42819.1| deoxyribodipyrimidine photolyase [Vibrio splendidus ATCC 33789]
Length = 452
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 88/320 (27%), Positives = 140/320 (43%), Gaps = 39/320 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRAS 179
+++ + F NDLR++DN L A+ +SV L +PR Y S + G +R
Sbjct: 1 MKKIGLYLFTNDLRINDNTLLYKAS-QSVDELLCVAVEPRLSTYSVRLSQEQENGAHRHL 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ +++ DL +L G L V LV+L K+ +A +HDE +
Sbjct: 60 FIKQAIDDLALSLARLGQRLFVLERNTSEDLVQLVKSQQVTHFFASSHCAHDERQLVIDT 119
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
D I ++ +TL+ D PF+L ++P ++ FR +V+ +EI + L
Sbjct: 120 LTQCPDLFISQQH--HTTLFESDAFPFELTKLPRSFTKFRLQVEYLEIEIEESVITSLPP 177
Query: 300 LPSRG-DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
P + IP L D KP GGET L L+ + +
Sbjct: 178 APQTATECYRKPIPELND---------------SKPG--DYIGGETVGLIHLENYFSNDY 220
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
A G +++ G S K SPWLA+GC+SP++++ LK+ A ND
Sbjct: 221 A----GTYKQTRNALDGIENSTKFSPWLALGCVSPKTIYRHLKQFEAHRGA----ND--- 269
Query: 419 GSSGAGSNWLMFELLWRDFF 438
+ W+ FELLWR++F
Sbjct: 270 -----STYWIYFELLWREYF 284
>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
Length = 537
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 149/328 (45%), Gaps = 42/328 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
+S++WFR LRVHDN +L+ A+ S V PV+ DP D S G + G R F
Sbjct: 7 SSLMWFRKGLRVHDNPALDYASKGSKFVYPVFVIDPHYMEPDPNAFSPGSSRAGINRIRF 66
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ES+ DL +L+ GS L+V G+P VL+ K + + + + K++
Sbjct: 67 LLESLVDLDLSLKKLGSKLLVLRGEPSQVLIRCLKIWDVEKLCFEYDTDSYYQALDAKVK 126
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
IEV TL++ D+ K G+ P +Y F KV G + +
Sbjct: 127 EYASSARIEVFSPVSHTLFNPADIIQKNGGKPPLSYQSFL-KVAGQPSWASSPLPTTISS 185
Query: 300 LPSRGDV---EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------ 350
LP GDV E ++P+L +LG + +GGE+EAL+RL
Sbjct: 186 LPPVGDVGSCEISEVPTLEELGYGDVE---------QDEWAPFRGGESEALKRLREKITN 236
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
K++ A ++ PKG+ S + + +SP+L GCLS R + L+ ++
Sbjct: 237 KEWVANFEK--PKGDP-----SAFMKPATTVLSPYLKFGCLSSRYFYQCLQDVYKNV--- 286
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
G+ S L+ +LLWRDFF
Sbjct: 287 -----GKHTSPPVS---LLGQLLWRDFF 306
>gi|380473816|emb|CCF46101.1| DASH family cryptochrome [Colletotrichum higginsianum]
Length = 711
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 156/369 (42%), Gaps = 49/369 (13%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN----TANNESVSVLPVYCF----------------DP 160
A+ I R+DLR+ DN L+ TA + VLPVY F P
Sbjct: 2 AVPNILIYLLRHDLRIADNPVLHHLATTAEHGFTHVLPVYVFPAHQIEISGFLRENAKSP 61
Query: 161 RDYGKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG- 218
+S G F + G +R F+ ESV +L+++L+ GS L +R G+ V +L +
Sbjct: 62 YPEARSQIGKFWRCGHHRTKFVAESVWNLKESLEKVGSGLALRAGRFGDVAEDLLQGFAD 121
Query: 219 ----ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPFKL-GEM 271
A++ E + +E K EE + A K G+ K W Y +DD L FK E+
Sbjct: 122 KQQKVGAIWMTSEEAIEEKKDEEDVSTACKKHGVAFKT-WLDEKYFIDDRDLHFKSPDEL 180
Query: 272 PTNYGGFREKVKGVEIRKTIEALDQLKG-LPSRGDVE-------PGDIPSLLDL------ 317
+ FR+ + + + KG LP D + P DIPS D
Sbjct: 181 ADVFTAFRKTQEPLREKPRPTLPPPSKGSLPPYPDQDTLPPQRSPFDIPSTFDALESALL 240
Query: 318 -GLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGA 376
L+ + + + + +GGE ALQRL K ++G + G
Sbjct: 241 KPLTSPFSDEPEFPENAQSVHPFQGGEGVALQRLDHLVKTGAMSSYKDTRNG----LLGV 296
Query: 377 NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRD 436
+FS K+S +L+ GCL+ R + + + + K G G+ + FELLWRD
Sbjct: 297 DFSTKLSAYLSFGCLTSRQIHEAMVRFEDGQDDKFKGTPGYGKGENDGTKAVRFELLWRD 356
Query: 437 FFRFITKKY 445
+ R T+K+
Sbjct: 357 YMRLCTRKF 365
>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
Length = 527
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 161/337 (47%), Gaps = 48/337 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFL 181
+++WFR LR+HDN SL A + S +V PV+ DP D SS G + G R FL
Sbjct: 2 ALLWFRKGLRLHDNPSLEAACHGSRNVYPVFVLDPWFLAPDPRASSPGSARVGINRIQFL 61
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ES+ DL +NL +RGS L++ G P V+ EL + + + + KI+
Sbjct: 62 LESLQDLDRNLSSRGSKLLLVHGNPIQVIPELLDKWRIRKLCFEFDTEPYALDRDAKIKE 121
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
KD+GIE+ T+++ D L K G+ P + F + + + T + +
Sbjct: 122 HAKDKGIELHCPVSHTIFNPDLLIAKNGGKAPLTFQSFCKNL----VPATKPIGNGPSAI 177
Query: 301 PSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------K 351
P GD ++ +P+L +LG + +H + +GGET AL RL +
Sbjct: 178 PPTGDLHGIKVVPVPTLEELGYAD-------FHED---FSPFRGGETVALTRLEDSLANE 227
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
K+ E++ PKG+ + + + +SP+L GCLS R ++ +K+
Sbjct: 228 KWVCEFEK--PKGDP-----TAFIKPATTVLSPYLKFGCLSSRLVYSRVKEV-------- 272
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
++ +S +S S L +LLWR+F F T Y++A
Sbjct: 273 -YSRAKSFTSPPVS--LEAQLLWREF--FYTAAYATA 304
>gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
Length = 440
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 144/328 (43%), Gaps = 55/328 (16%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R ++V F DLRVHD+ +L A + V+P+Y DP K P R FL +
Sbjct: 4 RTAVVLFTRDLRVHDHPALAAACSAFDRVVPLYVLDP--------ALQKLSPNRTRFLHQ 55
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++DLR+ L+ RG DLV+R G P V+LA+ +GA+ V +VS + E ++ A
Sbjct: 56 SLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADVSRYAHRRERRLRAEC 115
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+ ++ F G T+ L G+ + + +GV R + A +++ LP
Sbjct: 116 DRHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQGVRWRDELAAPKRVR-LPD- 173
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
V+PG +P G S AA+ GGET A +RL + P
Sbjct: 174 -GVDPGRLPDPPK-GDSPDAAV---------------GGETVARRRLTAWL------PTL 210
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
D HD + G S ++SP+L GC+SP ++ A++ D +
Sbjct: 211 DRYDDIHDDMAGDETS-RLSPYLRFGCVSP-------------LAVANRAGDRDGP---- 252
Query: 424 GSNWLMFELLWRDFFRFITKKYSSAKKV 451
+ +L WRDF+ + + V
Sbjct: 253 ----FVRQLCWRDFYHQVVAGFPDLSTV 276
>gi|119502978|ref|ZP_01625063.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2080]
gi|119461324|gb|EAW42414.1| Deoxyribodipyrimidine photolyase [marine gamma proteobacterium
HTCC2080]
Length = 433
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 142/318 (44%), Gaps = 52/318 (16%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFLIESVSD 187
WFRNDLR+ DN ++ ++ + S+L VY PR + G R FL ES+ +
Sbjct: 6 WFRNDLRLRDNPAI-ASHTAADSLLCVYLMPKPRPW----CNLVGVGAQRERFLRESLQE 60
Query: 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV-KSEEKIEAAMKDE 246
L L +G L+V G PE VL +L A +A EVS S+E+ A D+
Sbjct: 61 LHLQLAEQGQALMVLEGSPELVLPDLV------ARFAITEVSTTFTPGSQERKTLAYLDQ 114
Query: 247 GIEV--KYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR- 303
+ V + G++L+ DLPF+L ++P + GFR V+ + +R + + L P+
Sbjct: 115 KLPVPLQVHRGNSLFEPSDLPFELQDLPKVFSGFRRAVEKLNVRGPSPSTEVLPPPPAAQ 174
Query: 304 -GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ P DI KP + GG + L+RL++F + ++
Sbjct: 175 FDAIPPADI--------------------SKPTMLPLPGGRSAGLRRLRQFVFDDRSITQ 214
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
D++ G S +SPWLA G LS R + E+ + S
Sbjct: 215 YKETRNCLDALDG---SSTLSPWLANGNLSVREVAHEVFRFE------------RENLSN 259
Query: 423 AGSNWLMFELLWRDFFRF 440
+ WL FELLWR+FF +
Sbjct: 260 ESTYWLFFELLWREFFHW 277
>gi|356526185|ref|XP_003531700.1| PREDICTED: (6-4)DNA photolyase-like [Glycine max]
Length = 535
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 145/325 (44%), Gaps = 39/325 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
S++WFR LR+HDN +L A+ + + PV+ DP D S+ G + G R F
Sbjct: 6 GSLLWFRKGLRIHDNPALEVASRGASHLYPVFVIDPHFMEPDPNSSAPGSSRAGLNRIKF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+E + DL NL+ GS L++ G P V++ K + + + + K++
Sbjct: 66 LLECLVDLDLNLKNLGSRLLILKGDPAEVVIRCLKELHVKKLCFEYDTEPYYQALDVKVK 125
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
GIEV TL++ D+ K G+ P +Y F K+ G L
Sbjct: 126 NFALAAGIEVFSPVSHTLFNPTDIIEKNGGKPPLSYQSF-VKLAGEPPSSLSTVYSSLPP 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KKF 353
+ + G + ++P++ DLG + + + KGGE+EAL+RL KK+
Sbjct: 185 VGNLGSCDISEVPTIRDLGYGDAE---------QDEFSPFKGGESEALKRLDECMKDKKW 235
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
A ++ PKGN S + + +SP+L GCLSPR + ++ S+ +
Sbjct: 236 VANFEK--PKGNP-----SAFLKPATTVLSPYLKFGCLSPRYFYQSIQDVYKSMPKHT-- 286
Query: 414 NDGESGSSGAGSNWLMFELLWRDFF 438
L+ +LLWR+FF
Sbjct: 287 ---------LPPVSLIGQLLWREFF 302
>gi|74696815|sp|Q7SI68.1|CRYD_NEUCR RecName: Full=Putative cryptochrome DASH, mitochondrial; Flags:
Precursor
gi|38567324|emb|CAE76612.1| related to deoxyribodipyrimidine photo-lyase [Neurospora crassa]
Length = 745
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 161/381 (42%), Gaps = 60/381 (15%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVS-----VLPVYCF----------------DPRD 162
+ I R +LR+ DN + +N +LPVY F +P
Sbjct: 5 KVVIYAMRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHP 64
Query: 163 YGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVEL-----AKA 216
KS+ G+ + GPYRA FL ESV DL+ +LQ+ GSDL+VR G + V+ L AK
Sbjct: 65 APKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKE 124
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLP---FKLGEMPT 273
AV+ +E E+ + + GI+ K W Y + D L ++P
Sbjct: 125 CQVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFK-LWDDEKYLIHDRDTGITHLNDLPD 183
Query: 274 NYGGFREKVKGV--EIRKTIEALDQLKGLPSRGDVE--PGDIPSLLDLGLSQSAAMSQVW 329
+ +R++++ + + RKT+ ++ LP+ D++ P P G + + V
Sbjct: 184 VFTTYRKQIEPLREKARKTLPVPEK-GALPAYPDIDMIPSQQPPFNIPGTCEELVDAVV- 241
Query: 330 HGGKPAANSMK----------------GGETEALQRLKKFAAEYQAQPPKGNKDGNHDSI 373
+P N +K GGET A +R+ + K +++G +
Sbjct: 242 ---RPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNG----L 294
Query: 374 YGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 433
G +FS K+S +LA GC++ R + L K DG G+ + ELL
Sbjct: 295 LGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELL 354
Query: 434 WRDFFRFITKKYSSAKKVVEA 454
WRD+ R +KY VE
Sbjct: 355 WRDYMRLCHQKYGDKLFRVEG 375
>gi|440640654|gb|ELR10573.1| hypothetical protein GMDG_04846 [Geomyces destructans 20631-21]
Length = 686
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 163/376 (43%), Gaps = 64/376 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS----VLPVYCF------------------DPRDYG 164
I R DLR+ DN +TA ++ +LPVY F P
Sbjct: 8 IYLLRRDLRLEDNPVFHTAATDAAKTYTHLLPVYAFPAQQIEVSGFIPKVSEEKSPYPEA 67
Query: 165 KSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVEL-------AKA 216
+SS S F + GP+RA F+ ESV +L++ L GS L VRVG VL +L K
Sbjct: 68 RSSISKFWRCGPHRAKFIAESVWELKETLGNVGSGLEVRVGMLSDVLKDLLAGFKFNGKG 127
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHL--DDLPFK-LGEMPT 273
+ AV+ E +E E+ + G++ K W Y + DD+P K + E+P
Sbjct: 128 VNIAAVWMTAEEGVEEKLDEKDCKTICDAAGVDFK-LWKDEKYFVDDDDVPLKDISELPD 186
Query: 274 NYGGFREKVKGV----EIRKTIEALDQLKGLPSRGDVEPGDIPSLL-----DLGLSQSAA 324
+ +R+ V+ + A L LP + P P ++ DL S +
Sbjct: 187 VFTTYRKLVEPLLNAPRALLPTPAKGTLPPLPPMSIIPPQSPPFVIPNSYEDLESSLLSP 246
Query: 325 MSQ-------VWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN 377
+SQ + P + ++ GG A RL ++ KD +D + GA+
Sbjct: 247 ISQSPLPTFPLRPSSMPPSPTLHGGSQAAKSRLLHL---LESGAITTYKDTRND-LMGAD 302
Query: 378 FSCKISPWLAMGCLSPRSMFDEL------KKTATSISAASKWNDGESGSSGAGSNWLMFE 431
+S ++S +L+ GC++ R + D L S ++ + GE+G + A + +E
Sbjct: 303 YSVRLSSYLSQGCITARQIHDSLVSFESGDSNLPSCASTPGFGKGETGGTSA----IRYE 358
Query: 432 LLWRDFFRFITKKYSS 447
LLWRD+ R T+KY +
Sbjct: 359 LLWRDYMRLCTRKYGA 374
>gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
Length = 440
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 143/328 (43%), Gaps = 55/328 (16%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R ++V F DLRVHD+ +L A + V+P+Y DP K P R FL +
Sbjct: 4 RTAVVLFTRDLRVHDHPALAAACSAFDRVVPLYVLDP--------ALQKLSPNRTRFLHQ 55
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++DLR+ L+ RG DLV+R G P V+LA+ +GA+ V +VS + E ++ A
Sbjct: 56 SLADLREALRKRGGDLVIRRGDPVAETVKLARKVGAEGVGLSADVSRYAHRRERRLRAEC 115
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+ ++ F G T+ L G+ + + +GV R + A +++ LP
Sbjct: 116 DRHRMFLRLFPGLTIVEPGALRPGGGDHYRVFSPYFRAWQGVRWRDELAAPKRVR-LPD- 173
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
V+PG +P G S AA+ GGE A +RL + P
Sbjct: 174 -GVDPGRLPDPPK-GDSPDAAV---------------GGEAVARRRLTAWL------PTL 210
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
D HD + G S ++SP+L GC+SP ++ A++ +G
Sbjct: 211 DRYDDIHDDMAGDETS-RLSPYLRFGCVSP-------------LAVATR--------AGG 248
Query: 424 GSNWLMFELLWRDFFRFITKKYSSAKKV 451
+ +L WRDF+ + + V
Sbjct: 249 WDGPFVRQLCWRDFYHQVVAGFPDLSTV 276
>gi|359441768|ref|ZP_09231654.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20429]
gi|358036270|dbj|GAA67903.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20429]
Length = 439
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 141/316 (44%), Gaps = 37/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN L+ E ++ V+ +P + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRIDDNPILSELATEQCALDIVFVINPHWFKNNNYQQKPYGVHKQQFLMQSLF 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ L RG L V G+P +VL + D V V E++ A +K
Sbjct: 66 ELQQALIERGQTLHVLEGEPVSVLKQRIAEQHIDEVVCSEHVG----TYEQRQLARLKAH 121
Query: 247 GIEV--KYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+ V K TL+ DLPF L E+P ++ F++KV+ + I TI AL KGL +
Sbjct: 122 CLHVIFKTTQQDTLFQQSDLPFDLDELPKSFTPFKKKVEAINIPITISALP--KGLLPQP 179
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
P L+ + + A V HGG +K +T A+Y +
Sbjct: 180 ITLCAANPIELNEHTNYNNA---VMHGG------LKSAQTH--------LAQYFSGLLPS 222
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
+ + G N + K S WLA GC+S R ++ +++ +
Sbjct: 223 TYKTTRNELDGFNNTTKFSTWLAFGCVSARQAYNVVEEYE------------HKHIANES 270
Query: 425 SNWLMFELLWRDFFRF 440
+ W+ FELLWR++F++
Sbjct: 271 TYWIKFELLWREYFKW 286
>gi|153837520|ref|ZP_01990187.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
gi|149749116|gb|EDM59921.1| cryptochrome dash [Vibrio parahaemolyticus AQ3810]
Length = 445
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 143/330 (43%), Gaps = 50/330 (15%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYC---FDPRDYGKSSSGFDKTGPYRAS 179
++ + WF DLR+HDN L A++ ++ +YC P + + G R
Sbjct: 3 KKIGLYWFTFDLRLHDNLLLVNASSFLDELVCLYCRPSVTPFLHHFAQEA--TLGRARQK 60
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ S+ +L L G L P L + +G +YA DE + I
Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLGVTHLYADAMAGSDE----QSI 116
Query: 240 EAAMKDE--GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
++DE + + +L+ LPF L ++P + FR+ V+G++I I+A
Sbjct: 117 LHKLQDEYPHLVIVQHAVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDA---- 172
Query: 298 KGLPSRGDVEPGD--IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
PSR P D +P+L +SA S GGE L +++ +
Sbjct: 173 ---PSRLPPTPKDAQLPTLSSFYFDESALFS--------------GGEWSGLAHCRRYFS 215
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
A K ++G + G +S K SPWLA+GC+SPR ++ LK+ + A ND
Sbjct: 216 SGLASSYKETRNG----LDGMAYSTKFSPWLALGCVSPRMIYAMLKQYEQTQGA----ND 267
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + + Y
Sbjct: 268 --------STYWIYFELLWREYFYWYARCY 289
>gi|153831636|ref|ZP_01984303.1| cryptochrome dash [Vibrio harveyi HY01]
gi|148872146|gb|EDL70963.1| cryptochrome dash [Vibrio harveyi HY01]
Length = 450
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 142/327 (43%), Gaps = 52/327 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR-----DYGKSSSGFDKTGPYRASFL 181
+ WF NDLR+HDN L A+ E +++ VYC+ P+ + S F G + FL
Sbjct: 7 LYWFTNDLRMHDNPLLTRASEEVDALICVYCY-PKLSPFLAHFAQESMF---GSAKQQFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ L +L A L V P + + +G +Y +E + I
Sbjct: 63 DESLHCLNLSLNAFDQRLQVVDLHPYQAIKHAVEKLGVTHLYCDAFSGSEEQDVVDHIRQ 122
Query: 242 AMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ I EV+ +L+ ++DLPF L ++P + FR+K + V + + + L
Sbjct: 123 ESEHLTICQQEVR-----SLFTVEDLPFALEDLPDTFTKFRKKAEKVSLAEPFVTVTALP 177
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
PS L L + V KP GGE L+ +++ +
Sbjct: 178 LTPS-------------GLALPTLRLIRDV----KPCL--FTGGEQAGLEHARRYFSSTL 218
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
A K ++G + G ++S K SPWLA GCLSP++++ LK+ A
Sbjct: 219 ASEYKQTRNG----LDGMDYSTKFSPWLANGCLSPKTIYAMLKRYERLKGA--------- 265
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + +++
Sbjct: 266 ---NESTYWIYFELLWREYFYWYARRH 289
>gi|343507695|ref|ZP_08745084.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
gi|342796945|gb|EGU32607.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
Length = 446
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 38/322 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKT-GPYRASFLIESV 185
+ WF DLR+ +N L + E +++ +YC + ++ G +A F+ +SV
Sbjct: 7 LYWFTQDLRIDENPLLQRVSQEVETLICLYCVPKMTRFLTHYAQERQFGAAKAQFVAQSV 66
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L ++L A L++ P L L K +Y V DE ++++
Sbjct: 67 HNLSESLSALRQRLLITTSDPHIALHGLIKRHAVTHLYCDHFVGSDERDVLQRLDEEFPS 126
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ LYH DLPF+L +P + FR K +E ++ ++ LP +
Sbjct: 127 LIVTQDNM--RNLYHEADLPFELEALPATFTQFR---KQIEAQQKPSTSTKVTHLPPPLE 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
++ D S L+ L P GGE + +++ + Q K
Sbjct: 182 LQFEDTFSALNDDL--------------PVL--FPGGEHAGIAHCQRYFSSSLPQHYKQT 225
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
++ + G ++S K+SPWLAMGCLSPR++ L + ++G+ G++ + +
Sbjct: 226 RN----ELDGMDYSTKLSPWLAMGCLSPRTVLAMLAE-----------HEGQYGANES-T 269
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
W+ FELLWR++F + K+ +
Sbjct: 270 YWIYFELLWREYFYWSALKHGA 291
>gi|308126141|ref|ZP_05908184.2| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
gi|308110402|gb|EFO47942.1| cryptochrome dash [Vibrio parahaemolyticus AQ4037]
Length = 445
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 143/328 (43%), Gaps = 46/328 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYC---FDPRDYGKSSSGFDKTGPYRAS 179
++ + WF DLR+HDN L A++ ++ +YC P + + G R
Sbjct: 3 KKIGLYWFTFDLRLHDNLLLVNASSFLDELVCLYCRPSVTPFLHHFAQEA--TLGRARQK 60
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ S+ +L L G L P L + +G +YA DE + I
Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPYQALRYAIQYLGVTHLYADAMAGSDE----QSI 116
Query: 240 EAAMKDE--GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
++DE + + +L+ LPF L ++P + FR+ V+G++I I+A +L
Sbjct: 117 LHKLQDEYPHLVIVQHAVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPSRL 176
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+P + +P+L +SA S GGE L +++ +
Sbjct: 177 PPMP-----KDAQLPTLSSFYFDESALFS--------------GGEWSGLAHCRRYFSSG 217
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
A K ++G + G +S K SPWLA+GC+SPR ++ LK+ + A ND
Sbjct: 218 LASSYKETRNG----LDGMAYSTKFSPWLALGCVSPRMIYAMLKQYEQTQGA----ND-- 267
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + + Y
Sbjct: 268 ------STYWIYFELLWREYFYWYARCY 289
>gi|444377559|ref|ZP_21176769.1| Cryptochrome [Enterovibrio sp. AK16]
gi|443678340|gb|ELT85011.1| Cryptochrome [Enterovibrio sp. AK16]
Length = 427
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 142/332 (42%), Gaps = 41/332 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR+DLR+ DN +L + L VY DP + + G +R FL +S+
Sbjct: 4 LLWFRHDLRLADNPALVALSRRCDQALMVYVIDPEWFRPAHFQSRHLGRFREEFLYQSLR 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L + L+ R LVV+VG P V+ +L K G D + H V +++ +
Sbjct: 64 ALERELKKRKQRLVVKVGNPLQVIPDLCKKHGIDLLAV---TDHPGVYERQQVAYLSRTL 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G EV +L+ L F P + FR+ V+ I LP
Sbjct: 121 GCEVSVSESFSLFLRSQLTFDKTTFPQTFSQFRKHVEKQNI------------LPCIPIS 168
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM---KGGETEALQRLKKFAAEYQAQPPK 363
P +P +D +W GG+ + GGE + +L +F ++ Q K
Sbjct: 169 APESLPKHID-------ERRDIW-GGQEFVYDLTPYHGGEDSGMVQLNQFF--WKTQGLK 218
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
K+ + + G FS ++S WLA G +SPR + EL ++ G S S+ +
Sbjct: 219 NYKE-TRNGLDGWQFSSRLSAWLANGSISPRIVAAELDNY--------EYRHGRSDSTES 269
Query: 424 GSNWLMFELLWRDFFRFITKKYSSAKKVVEAV 455
+ ELLWR++F+++ + ++ E +
Sbjct: 270 ----MYAELLWREYFQWMMHYHGASMFAFEGI 297
>gi|148980022|ref|ZP_01815843.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
gi|145961465|gb|EDK26769.1| deoxyribodipyrimidine photolyase [Vibrionales bacterium SWAT-3]
Length = 447
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 139/322 (43%), Gaps = 43/322 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRAS 179
+++ + F NDLR++DN L+ A+ + V L +P+ Y S G +R
Sbjct: 1 MKKIGLYLFTNDLRINDNTLLHRAS-QLVDELLCVAIEPKLSTYSVRLSQEQHNGAHRHL 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ ++++DL NL G L V LV+L K+ +A +HDE + +
Sbjct: 60 FIKQAINDLALNLARLGQRLFVLERNKSEDLVQLVKSQQVTHFFASSHCAHDERQLIKDT 119
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
D I ++ +TL+ D PF+L ++P ++ FR +V+ +EI + L
Sbjct: 120 LTQCPDLFISQQH--HTTLFESDAFPFELTKLPRSFTKFRLQVERLEINTNESVVAYLPP 177
Query: 300 LPSRGDV---EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P EP D+G GGET L L+ + +
Sbjct: 178 APQTATYPYREPILESEASDIG-------------------DYVGGETAGLIHLESYFSN 218
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
A G +++ G S K SPWLA+GC+SP++++ LK+ A ND
Sbjct: 219 DYA----GTYKQTRNALDGIENSTKFSPWLALGCVSPKTIYRHLKQFEAHRGA----ND- 269
Query: 417 ESGSSGAGSNWLMFELLWRDFF 438
+ W+ FELLWR++F
Sbjct: 270 -------STYWIYFELLWREYF 284
>gi|164428444|ref|XP_965722.2| hypothetical protein NCU00582 [Neurospora crassa OR74A]
gi|157072149|gb|EAA36486.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 722
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 160/375 (42%), Gaps = 60/375 (16%)
Query: 130 FRNDLRVHDNESLNTANNESVS-----VLPVYCF----------------DPRDYGKSS- 167
R +LR+ DN + +N +LPVY F +P KS+
Sbjct: 1 MRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHPAPKSAV 60
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD-----AV 222
G+ + GPYRA FL ESV DL+ +LQ+ GSDL+VR G + V+ L + + A AV
Sbjct: 61 GGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKECQVGAV 120
Query: 223 YAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLP---FKLGEMPTNYGGFR 279
+ +E E+ + + GI+ K W Y + D L ++P + +R
Sbjct: 121 WMTSHEGSEEKSEEKTVASFCAKSGIDFK-LWDDEKYLIHDRDTGITHLNDLPDVFTTYR 179
Query: 280 EKVKGV--EIRKTIEALDQLKGLPSRGDVE--PGDIPSLLDLGLSQSAAMSQVWHGGKPA 335
++++ + + RKT+ ++ LP+ D++ P P G + + V +P
Sbjct: 180 KQIEPLREKARKTLPVPEK-GALPAYPDIDMIPSQQPPFNIPGTCEELVDAVV----RPV 234
Query: 336 ANSMK----------------GGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFS 379
N +K GGET A +R+ + K +++G + G +FS
Sbjct: 235 KNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNG----LLGPDFS 290
Query: 380 CKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 439
K+S +LA GC++ R + L K DG G+ + ELLWRD+ R
Sbjct: 291 TKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELLWRDYMR 350
Query: 440 FITKKYSSAKKVVEA 454
+KY VE
Sbjct: 351 LCHQKYGDKLFRVEG 365
>gi|342875294|gb|EGU77092.1| hypothetical protein FOXB_12390 [Fusarium oxysporum Fo5176]
Length = 730
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 156/367 (42%), Gaps = 55/367 (14%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDY----------------GKSS 167
+ R DLR DN L T+++ +LP+Y P +S
Sbjct: 8 VYLLRRDLRAIDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVAEGQKSPYPEARSQ 67
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI-----GADA 221
G F + GP RA F ES+ D+++NL+ S ++VR+G + VL L K++ D
Sbjct: 68 VGRFWRCGPVRAKFQAESIWDVKQNLEDIHSGMLVRIGNFDNVLKHLIKSLHDEHQSVDT 127
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EMPTNYGGF 278
V+ EVS +EV + + + + I K W Y++DD L E+P + F
Sbjct: 128 VWMTEEVSKEEVDDQNAVASVCSENNINFK-LWQDEKYYIDDRDTGLDDPKELPDVFTTF 186
Query: 279 REKVKGVEIR-KTIEALDQLKGLP------SRGDVEPGDIP----SLLDLGLSQSAAMSQ 327
R+ + + R + Q LP + P IP L +M Q
Sbjct: 187 RKTQEPLRERPRASLPRPQAGSLPPFPSSWAPPQEPPFQIPDNYNDFEQRLLEPINSMVQ 246
Query: 328 ---VWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISP 384
+ +A+ KGGE A RL + ++G + G ++S K+S
Sbjct: 247 DPPAYPDDARSAHPFKGGENPAWDRLYHLIKSGSMTTYQETRNG----LLGTDYSTKLSA 302
Query: 385 WLAMGCLSPRSMFDELKK----TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
+LA+G +S RS+ +EL K S S A + GE+ G+ + FELLWRD+ R
Sbjct: 303 YLALGSISARSIHEELVKFENGQEQSYSRAIGFGQGEN----EGTKAVRFELLWRDYMRL 358
Query: 441 ITKKYSS 447
T K+ S
Sbjct: 359 CTMKFGS 365
>gi|310791128|gb|EFQ26657.1| DASH family cryptochrome [Glomerella graminicola M1.001]
Length = 705
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 158/368 (42%), Gaps = 55/368 (14%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVS-VLPVYCF----------------DPRDYGKS 166
I FR+DLR+ DN L+TA++ + VLP+Y F P +S
Sbjct: 8 IYLFRHDLRIADNPIIHHLSTASDHGFTHVLPIYVFPAHQIEISGFLREGSKSPYPEARS 67
Query: 167 SSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----AD 220
G F + GP+R F+ +SV +L+++L++ S L +R GK V+ +L ++
Sbjct: 68 QIGKFWRCGPHRTKFVAQSVWNLKESLESVHSGLALRAGKFGDVVDDLLRSFADKKQKVG 127
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL---GEMPTNYGG 277
AV+ E S +E + E+ + AA + G+ K W Y +DD E+ +
Sbjct: 128 AVWMTAEESVEEKRDEKAVSAACEKHGVAFKT-WTDEKYFIDDRDLHFESPSELADVFTA 186
Query: 278 FREKVKGVEIRKTIEALDQLKG-LPSRGDVE-------PGDIPSLLDLGLSQSAAMSQVW 329
FR+ + + + KG LP D P IPS D + AA+ +
Sbjct: 187 FRKTQEPLREKPRPTLPHPKKGSLPPYPDQSIIPPQRTPFQIPSTYD---ALEAALLKPL 243
Query: 330 HG----------GKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFS 379
+ + KGGE A++RL+ K ++ + G +FS
Sbjct: 244 KSPFNEEPKFPENAKSVHPFKGGEDFAIERLEHLVKTGSVSSYKDTRN----EMLGVDFS 299
Query: 380 CKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 439
K+S +LA+GCL+ R + + L K K G G+ + FELLWRD+ R
Sbjct: 300 TKLSAYLALGCLTSRQIHEALVKYEDGQDDRFKETPGYGKGENDGTKAVRFELLWRDYMR 359
Query: 440 FITKKYSS 447
T K+ +
Sbjct: 360 LCTMKFGA 367
>gi|221134513|ref|ZP_03560818.1| deoxyribodipyrimidine photolyase [Glaciecola sp. HTCC2999]
Length = 441
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 148/335 (44%), Gaps = 43/335 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYG----KSSSGFDK--TGPYRASF 180
+ WF +DLR+ DN L + + +Y F+ D+ K + F++ G +R F
Sbjct: 5 LYWFEHDLRLADNLPLQQTIAQIDQLHCIYIFNAADFSTTKKKGAGQFNQRHMGQHRYRF 64
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAV--YAHREVSHDEVKSEEK 238
+ +++ DL+ L G L + G+P ++ +L + + H V + S K
Sbjct: 65 IRQALDDLQSQLHTFGQQLHIYYGEPLDIIEQLNTQFNFTHIGKHFHTGVYERNLISALK 124
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQL 297
I+ K Y TLY +DDLP + +P + FR KV K E R AL
Sbjct: 125 IQYPNKTIINTNSY----TLYDIDDLPMSIENLPDVFSPFRRKVEKFCEARLPDNALP-- 178
Query: 298 KGLPSRGDVE---PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
P E P ++P++ A V + GGE +A +++ +
Sbjct: 179 VSFPPVVVAEQNMPDELPAIQVCDKKLLAKNETV--------QRLIGGELKAKEQMHHYT 230
Query: 355 AEYQA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
QA K ++G + G FS K+SPWLA GC+SPR ++AA
Sbjct: 231 YGTQALSEYKETRNG----LEGWEFSSKLSPWLAAGCISPR-----------QVAAAITE 275
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ + G++ + + WL FELLWR+FF++ K+ A
Sbjct: 276 YEAQHGANDS-TYWLFFELLWREFFQWQQLKHGKA 309
>gi|262275892|ref|ZP_06053701.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
hollisae CIP 101886]
gi|262219700|gb|EEY71016.1| deoxyribodipyrimidine photolyase single-strand-specific [Grimontia
hollisae CIP 101886]
Length = 427
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 140/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR+DLR+ DN +L T + L V+ +P + + G +R FL +S+
Sbjct: 4 LFWFRHDLRLADNPALITLSRRCSKALMVFVINPEWFRPAHYQSRHLGRFREEFLYQSLR 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L + L+ LVV+VG P V+ +L K G D V H V +++ +
Sbjct: 64 SLERELKKHKQRLVVKVGNPLLVIPDLCKKHGIDMVAM---TDHPGVYERQQVAYLSRTL 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
EV TL+ L F P + FR+ V+ I LP
Sbjct: 121 RSEVSVSESFTLFLRSQLAFDKTTYPATFSQFRKHVEKQNI------------LPCIPIS 168
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM---KGGETEALQRLKKFAAEYQAQPPK 363
P +P+++D +W GG+ + GGE + +L +F ++ Q K
Sbjct: 169 APDSLPTVID-------ERRDIW-GGQEFVYDLTPYHGGEDAGMVQLNQFF--WKTQGLK 218
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
K +D + G FS ++S WLA G +SPR++ EL ++ G S S+ +
Sbjct: 219 NYKQTRND-LDGWQFSSRLSAWLANGSISPRTVAAELDNY--------EYRHGRSDSTQS 269
Query: 424 GSNWLMFELLWRDFFRFITKKYSS 447
+ ELLWR++F+++ Y +
Sbjct: 270 ----MYAELLWREYFQWMMHYYGA 289
>gi|374686520|emb|CCF55053.1| DASH-cryptochrome [Fusarium fujikuroi]
Length = 714
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 154/367 (41%), Gaps = 55/367 (14%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDY--------GKSS-------- 167
+ R DLR DN L T+++ +LP+Y P GK S
Sbjct: 8 VYLLRRDLRAIDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVAEGKKSPYPEARSQ 67
Query: 168 -SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI-----GADA 221
F + GP RA F ES+ D+++NL+ S ++VRVG + VL L K++ D
Sbjct: 68 VGRFWRCGPVRAKFQAESIWDVKQNLEDISSGMLVRVGNFDNVLKHLIKSLHDEHQSVDT 127
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EMPTNYGGF 278
V+ EVS +EV + + + + I K W Y++DD L E+P + F
Sbjct: 128 VWMTEEVSKEEVDDQNAVASVCSENNINFK-LWQDEKYYIDDRDTGLDDPKELPDVFTTF 186
Query: 279 REKVKGVEIRKTIE----ALDQLKGLPSRGDV--EP--------GDIPSLLDLGLSQSAA 324
R+ + + R L PS + EP D L ++
Sbjct: 187 RKTQEPLRERPRASLPRPQAGSLPPFPSSWALPQEPPFQIPDNYNDFEQRLLEPINSMVP 246
Query: 325 MSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISP 384
V+ +A+ KGGE A RL + ++G + G ++S K+S
Sbjct: 247 DPPVYPEDARSAHPFKGGENPAWDRLYHLIKSGSMTTYQETRNG----LLGIDYSTKLSA 302
Query: 385 WLAMGCLSPRSMFDELKK----TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
+LA+G +S R + +EL K S S A + GE+ G+ + FELLWRD+ R
Sbjct: 303 YLALGSISARCIHEELVKFEDGQEQSYSKAIGFGQGEN----EGTKAVRFELLWRDYMRL 358
Query: 441 ITKKYSS 447
T K+ S
Sbjct: 359 CTMKFGS 365
>gi|312881360|ref|ZP_07741157.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
gi|309371000|gb|EFP98455.1| RNA-binding cryptochrome Cry1 [Vibrio caribbenthicus ATCC BAA-2122]
Length = 431
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 143/335 (42%), Gaps = 60/335 (17%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVY------CFDPRDYGKSSSGFDKTGPY 176
+R + WF NDLR+ DN L+ A+ E ++ +Y CF + S ++ G
Sbjct: 3 KRIGLYWFTNDLRLTDNPLLHKASKEVDQLICLYTRPQLTCFLQK-----YSCQERWGAA 57
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPET-VLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +S+ +L ++L G L V V +P L +L +Y ++ DE
Sbjct: 58 RTLFLNQSLRNLSESLDDVGQQLTV-VDEPTIGTLSDLVTKHEVSDLYCNQFAGFDEQSV 116
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALD 295
E++ D I + LY + LPF L +P + FR+ V+G+ +R+ +E
Sbjct: 117 IEQLGRNFSDLIIHQNS--SNHLYSEEQLPFALNGLPNTFTKFRKLVEGISLRELVEV-- 172
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK-----GGETEALQRL 350
P P + +G PA M+ GGE +
Sbjct: 173 ------------PRLPPPIKSVGRGVQI----------PAEKQMQSVEFLGGEVFGMDHC 210
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
++ + +A K ++G + G ++S K SPWLA GC+SPR + + L+
Sbjct: 211 LRYFSTKRASEYKLTRNG----LDGPSYSTKFSPWLAHGCISPRQVLEVLRDYE------ 260
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ + + W+ FELLWR+FF + +++
Sbjct: 261 ------QKNGANESTYWIFFELLWREFFYWYARRW 289
>gi|392555103|ref|ZP_10302240.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas undina NCIMB
2128]
Length = 436
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 46/324 (14%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + W +NDLR+ DN LN + + + V+ +P + ++ G ++ FL
Sbjct: 1 MKKRILYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNNYQQKTYGVHKQRFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ +L++++ G L + G P VL + + D V +++ V + +I A
Sbjct: 61 MQSLYELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQIG---VYEQRQISA 117
Query: 242 AM-KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
K + K TLY LPF+L +PT + FR+K++ EI A +
Sbjct: 118 LKSKCTTVVFKSVMQDTLYQQQQLPFELANLPTGFTPFRKKIEAAEISLATHAFSAAR-- 175
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK--GGETEALQRLKKFAAEYQ 358
+P + L Q KPA + + GG AL+ +++ +
Sbjct: 176 ----------LPPPIILCAKQPIE--------KPATGNTQLLGGHQAALEHCQQY---FS 214
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ P K + + G + S K S WLA GC+S + +F + D
Sbjct: 215 SALPSSYKI-TRNELDGFDNSTKFSSWLAFGCISAKQVFCAV--------------DAYE 259
Query: 419 GSSGAG--SNWLMFELLWRDFFRF 440
GA + W+ FELLWR++F++
Sbjct: 260 AQYGANESTYWIKFELLWREYFKW 283
>gi|408389293|gb|EKJ68755.1| hypothetical protein FPSE_11060 [Fusarium pseudograminearum CS3096]
Length = 703
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 106/384 (27%), Positives = 164/384 (42%), Gaps = 56/384 (14%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRD----------------YGKSS 167
+ R DLR DN L T+++ +LP+Y P KS
Sbjct: 8 VYLLRRDLRAIDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYPLAKSQ 67
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-----DA 221
G F + GP RA F E + D++KN + GS +++R+GK + VL L K++ D
Sbjct: 68 VGRFWRCGPLRAKFQAECIWDVKKNFEDIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDT 127
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EMPTNYGGF 278
V+ E S +E+ + + + EGI K W Y +DD L + P + +
Sbjct: 128 VWMTEEPSKEELDDQNAVASVCSKEGIGFK-LWHDEKYFIDDRDNGLKDPQDTPDVFTTY 186
Query: 279 RE-KVKGVEIRKTIEALDQLKGLPSR-----GDVEPGDIPSLLD------LGLSQSAAMS 326
R+ + E + Q LPS P IP+ D L ++ +S
Sbjct: 187 RKTQEPLRERPRPPLPRPQAGSLPSFPSWIPPQQAPFRIPNNYDEFERLLLEPVKAPIIS 246
Query: 327 Q--VWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISP 384
+ G +A+ KGGET A RL + ++G + G +S K+S
Sbjct: 247 DPPPFPEGAKSAHPFKGGETPAWDRLYHLIKSGAMTTYQETRNG----LLGTEYSTKLSA 302
Query: 385 WLAMGCLSPRSMFDELKK----TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
+LAMG ++ RS+ EL K + S S + GE+ GS + FELLWRD+ R
Sbjct: 303 FLAMGTITARSIHAELVKFEDGSEESYSTGFGFGKGEN----EGSRAVRFELLWRDYMRL 358
Query: 441 ITKKYSSAKKVVEAVP-ATACTGA 463
TKK+ + V+ A+ +GA
Sbjct: 359 CTKKFGARLFKVDGFKGASGASGA 382
>gi|449491122|ref|XP_004158807.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 544
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 155/350 (44%), Gaps = 47/350 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFL 181
S++WFR +R+HDN +L A + + PV+ DP D S G + G R FL
Sbjct: 7 SLMWFRKGIRIHDNPALEYAAKGAKFLYPVFVIDPHYMEPDPSAFSLGSSRAGLNRIRFL 66
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ES+ DL NL+ GS L+V G+P VL+ K + + + +++
Sbjct: 67 LESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDTDPYYQALDIRVQN 126
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
GIEV TL++ D+ K G P +Y F K+ G + L
Sbjct: 127 HASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFL-KLAGEPSWACAPLSTTVSSL 185
Query: 301 PSRGDV---EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
P GD E D+P++ DLG A K +GGETEAL+RLK+
Sbjct: 186 PPVGDTGRSEISDVPTIKDLGYEDMA---------KDDWTPFRGGETEALKRLKESMSNK 236
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A+++ PKG+ S + + +SP+L GCLS R + +++ ++
Sbjct: 237 DWVAKFEK--PKGDP-----SAFLKPATTVLSPYLKFGCLSSRYFYQCIQEIYKNVK--- 286
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFR---FITKKYSSAK--KVVEAVP 456
G + + L+ +LLWR+FF F T + K K+ + +P
Sbjct: 287 ----GHTSPPVS----LVGQLLWREFFYTAAFGTPNFDRMKDNKICKQIP 328
>gi|346326523|gb|EGX96119.1| cryptochrome DASH [Cordyceps militaris CM01]
Length = 657
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 93/370 (25%), Positives = 149/370 (40%), Gaps = 54/370 (14%)
Query: 124 RASIVWFRNDLRVHDNESLN----TANNESVSVLPVYCFDPRD----------------Y 163
R + R DLR+ DN + T+++ +LPV P
Sbjct: 5 RVLVYLLRRDLRISDNPVFHRLTSTSDHGFTHLLPVVVLPPDQIETSGFLNPAQTSPFPL 64
Query: 164 GKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI----- 217
KS G F + GP+RA FL E+V DL+ L +R S L+VR+G P ++ + + +
Sbjct: 65 AKSKVGNFWRCGPHRAKFLAEAVWDLKDTLVSRHSGLIVRIGTPADIVRGIIQHLQTSGN 124
Query: 218 -GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD-DLPFKLGEMPTNY 275
AV+ +V +E + + I I+ Y D DL E+P +
Sbjct: 125 AAVSAVWMTDDVPIEERQQQADISVVCDRANIDFTLIPDEKYYIDDRDLDIATQELPDVF 184
Query: 276 GGFREKVKGVEIRKTIEALDQ---LKGLPSRGDVEPGDIP-----------SLLDLGLSQ 321
+R+ + + + D L P + P IP L L+
Sbjct: 185 TTYRKAQEPLREKPRDVYPDSKSPLPPFPPEALIPPQSIPFQVPDNLDSFLKCLVKPLAF 244
Query: 322 SAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCK 381
+A+ GGE A+ RL+ A ++G + GA+FS K
Sbjct: 245 ELPNPPAPPPDAQSAHPFLGGEQSAMNRLQHLVKSGAASSYSDTRNG----LLGADFSTK 300
Query: 382 ISPWLAMGCLSPRSMFDELKK----TATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 437
+S +L +GCL+ R + EL K T + A+ + GE+ + A + ELLWRD+
Sbjct: 301 LSAFLCLGCLTARQVHGELVKFEDGTDSQYQEATGYGQGENNGTKA----IRLELLWRDY 356
Query: 438 FRFITKKYSS 447
R TKK+ +
Sbjct: 357 MRLCTKKFGA 366
>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
Length = 557
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 142/327 (43%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L+ A ++ SV VY DP + SSSG G R FL++S
Sbjct: 2 SSVHWFRKGLRLHDNPALSAALRDATSVRCVYILDPW-FAASSSG----GVNRWRFLLQS 56
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 57 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAK 116
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G P Y F+ + +E+ + T + ++
Sbjct: 117 EAGVEVIVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTRQQMEAC 176
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------K 351
+ R E +PSL +LG +W GGETEAL RL K
Sbjct: 177 RAEIKRNHDETYGVPSLDELGFHSEIKGPSIW----------PGGETEALARLDRHLERK 226
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + LK+ +
Sbjct: 227 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLKELYKKV---- 274
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 275 KKNSPPPLS-------LYGQLLWREFF 294
>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
Length = 1646
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 149/361 (41%), Gaps = 55/361 (15%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA + ++VWFR LRVHDN +L+ + + PV+ DP S + G R
Sbjct: 1095 AAAKGRTLVWFRKALRVHDNPALSRGTLHATACQPVFVLDPWFCQPS-----RVGANRMR 1149
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL++S+ DL L+ARGS L+V G+P VL K D+V ++ + +
Sbjct: 1150 FLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYAKIRDAAV 1209
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEI-RKTIEALDQL 297
A++ G+E G TLY +D++ K G PT Y GF + V + I+A++++
Sbjct: 1210 RGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAPIDAMEKM 1269
Query: 298 KGLPSRGDVEPG----------DIPSLLDLGL---------------SQSAAMSQVWHGG 332
G + D E IP+L DLG ++ ++
Sbjct: 1270 PGSFASSDEETKALVQGVADAYGIPTLEDLGYEPLGDDEGFPGVGGETEGLRRLRLMLAR 1329
Query: 333 KPAANSMKGGETEALQRLKKFAAEYQAQPPK-------GNKDGNHDSIYGANF-----SC 380
K + T R + + +P +KDG+ S GA +
Sbjct: 1330 KEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDA-STSGAEALMIPSTT 1388
Query: 381 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
+SP++ GC+SPR + EL + G LM +L+WR+F+
Sbjct: 1389 ALSPYMKFGCVSPRVFYHELTAVYKEL----------EGKHSKPPTSLMGQLMWREFYYL 1438
Query: 441 I 441
+
Sbjct: 1439 V 1439
>gi|307105812|gb|EFN54060.1| hypothetical protein CHLNCDRAFT_136148 [Chlorella variabilis]
Length = 661
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 114/429 (26%), Positives = 179/429 (41%), Gaps = 103/429 (24%)
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTA---------NNESVSVLPVYCFDPRDYGKSS 167
++G + A+++WFRNDLR+ D+E L++A +S +LP YC D R+ +
Sbjct: 28 DSGPTRKPAALIWFRNDLRLADHEPLHSAAADLQHCLSQGQSPLLLPFYCLDERELAPRA 87
Query: 168 S------GFD--KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVL---VELAKA 216
G D + GP+R L+E+ + LR L+ GSDL+ G+PE ++ V LA A
Sbjct: 88 GELPQEGGLDIPQLGPHRLRLLLEACASLRAALRRLGSDLLAAQGRPEALVGRLVALAAA 147
Query: 217 IGADAVYAHREVSHDEVKSE------EKIEAAMKDEGI--EVKYFWGSTLYHLDDLPFKL 268
G+ ++ H +S D ++ EAA G+ V +WG TLYH DDLPF L
Sbjct: 148 AGSSSMALHHHMSPDAASADLEDAVAAAFEAAAARHGLPCSVHRYWGCTLYHPDDLPFHL 207
Query: 269 GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP--------GDIPSLL----- 315
+ G R E Q +G SR V P G +P+ L
Sbjct: 208 WACGSASSGGRPGAA-AVAGPAAEQQQQQRGQCSR--VNPAAAEAGLLGPLPTDLASVYS 264
Query: 316 --------------DLGLSQSAAMSQVWHGGKPAANSM--KGGETEALQRLKKFAAEYQA 359
LG + AA++ G A +++ GE +A+QRL+ + ++
Sbjct: 265 AAGGAATAALACWEALGAVRCAALAPACSGRHDARSALPFGMGEEQAVQRLRYYLGLEES 324
Query: 360 ----------QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT---- 405
+ P +G + S K+S +L++GCLSPR+ E+ + A
Sbjct: 325 DGHSVRSVDQEAPIATYRETRMQPFGVDSSAKLSAFLSLGCLSPRTAHAEVARLAVLEQQ 384
Query: 406 --------------------------SISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 439
+ AA+ W + ++G + WL+ L RDFF
Sbjct: 385 QQQQQRRRRGQASSGDAAATAAVAAAAGEAAAAWREPQAGDT---WRWLLMHLAIRDFFV 441
Query: 440 FITKKYSSA 448
F K A
Sbjct: 442 FTAVKEGDA 450
>gi|18400841|ref|NP_566520.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|306756349|sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
defective 3
gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 556
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 153/338 (45%), Gaps = 40/338 (11%)
Query: 114 LDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSG 169
L+P A S++WFR LRVHDN +L A+ S + PV+ DP D S G
Sbjct: 14 LNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPG 73
Query: 170 FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS 229
+ G R FL+ES+ DL +L+ GS L+V G+P VLV + + +
Sbjct: 74 SSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTD 133
Query: 230 HDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIR 288
+ K++ G+EV TL++ + K G+ P +Y F KV G
Sbjct: 134 PYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFL-KVAGEPSC 192
Query: 289 KTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN--SMKGGETEA 346
E + LP GD+ +LG+S+ ++ ++ + A+ +GGE+EA
Sbjct: 193 AKSELVMSYSSLPPIGDIG--------NLGISEVPSLEELGYKDDEQADWTPFRGGESEA 244
Query: 347 LQRLKK------FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL 400
L+RL K + A ++ PKG+ S + + +SP+L GCLS R + L
Sbjct: 245 LKRLTKSISDKAWVANFEK--PKGDP-----SAFLKPATTVMSPYLKFGCLSSRYFYQCL 297
Query: 401 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ + D + +S S L+ +LLWR+FF
Sbjct: 298 QNI---------YKDVKKHTSPPVS--LLGQLLWREFF 324
>gi|359447492|ref|ZP_09237086.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20439]
gi|358038590|dbj|GAA73335.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20439]
Length = 436
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 140/324 (43%), Gaps = 46/324 (14%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + W +NDLR+ DN LN + + + V+ +P + +S G ++ FL
Sbjct: 1 MKKRILYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNSYQQKPYGVHKQRFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ +L++++ G L + G P VL + + D V +++ V + +I A
Sbjct: 61 MQSLYELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQIG---VYEQRQISA 117
Query: 242 AM-KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
K + K TLY LPF+L +PT + FR+K++ EI +
Sbjct: 118 LKSKCTTVVFKSVMQDTLYQQQQLPFELANLPTGFTPFRKKIEAAEISLATHTFSAAR-- 175
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK--GGETEALQRLKKFAAEYQ 358
+P + L Q KPA + + GG AL+ +++ +
Sbjct: 176 ----------LPPPIILCAKQPIE--------KPATGNTQLLGGHQAALEHCQQY---FS 214
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ P K + + G + S K S WLA GC+S + +F + D
Sbjct: 215 SALPSSYKI-TRNELDGFDNSTKFSSWLAFGCISAKQVFCAV--------------DAYE 259
Query: 419 GSSGAG--SNWLMFELLWRDFFRF 440
GA + W+ FELLWR++F++
Sbjct: 260 AQYGANESTYWIKFELLWREYFKW 283
>gi|359436511|ref|ZP_09226610.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20311]
gi|358028804|dbj|GAA62859.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20311]
Length = 436
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 139/322 (43%), Gaps = 42/322 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + W +NDLR+ DN LN + + + V+ +P + ++ G ++ FL
Sbjct: 1 MKKRILYWLQNDLRIDDNPILNDLSQQQCELDLVFVINPAWFKSNNYQQKPYGVHKQRFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ +L++++ G L + G P VL + + D V +++ V + +I A
Sbjct: 61 MQSLYELQESVLELGQTLHIIEGDPVEVLTQRINELSIDEVVYSQQIG---VYEQRQISA 117
Query: 242 AM-KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
K + K TLY LPF+L +PT + FR+K++ EI +
Sbjct: 118 LKSKCTTVVFKSVMQDTLYQQQQLPFELANLPTGFTPFRKKIEAAEISLATHTFSAAR-- 175
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK--GGETEALQRLKKFAAEYQ 358
+P + L Q KPA + + GG AL+ +++ +
Sbjct: 176 ----------LPPPIILCAKQPIE--------KPATGNTQLLGGHQAALEHCQQY---FS 214
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ P K + + G + S K S WLA GC+S + +F + T A
Sbjct: 215 SALPSSYKI-TRNELDGFDNSTKFSSWLAFGCISAKQIFCAVDAYETQYGA--------- 264
Query: 419 GSSGAGSNWLMFELLWRDFFRF 440
+ W+ FELLWR++F++
Sbjct: 265 ---NESTYWIKFELLWREYFKW 283
>gi|79313247|ref|NP_001030703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 445
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 150/332 (45%), Gaps = 28/332 (8%)
Query: 114 LDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSG 169
L+P A S++WFR LRVHDN +L A+ S + PV+ DP D S G
Sbjct: 14 LNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPG 73
Query: 170 FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS 229
+ G R FL+ES+ DL +L+ GS L+V G+P VLV + + +
Sbjct: 74 SSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTD 133
Query: 230 HDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIR 288
+ K++ G+EV TL++ + K G+ P +Y F KV G
Sbjct: 134 PYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFL-KVAGEPSC 192
Query: 289 KTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN--SMKGGETEA 346
E + LP GD+ +LG+S+ ++ ++ + A+ +GGE+EA
Sbjct: 193 AKSELVMSYSSLPPIGDIG--------NLGISEVPSLEELGYKDDEQADWTPFRGGESEA 244
Query: 347 LQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
L+RL K ++ +A K S + + +SP+L GCLS R + L+
Sbjct: 245 LKRLTKSISD-KAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNI--- 300
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ D + +S S L+ +LLWR+FF
Sbjct: 301 ------YKDVKKHTSPPVS--LLGQLLWREFF 324
>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 595
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 137/325 (42%), Gaps = 45/325 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFR LR+HDN +L A ++ V PV+ DP +SS K R +FL+ES+
Sbjct: 7 SIIWFRKGLRLHDNPALLEACKDAKHVYPVFVLDPHFLQQSSY---KVSVNRYNFLLESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAV-YAHREVSHDEVKSEEKIEAAMK 244
DL+++ QARGS L+V GKPE V + + G + + H + +V+ + +
Sbjct: 64 EDLQRSFQARGSRLLVLRGKPEEVFPRVFREWGVTQLCFEHDTEPYAKVR-DAAVRRLAA 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV------EIRKTIEALDQL 297
+ G+EV TLY D L + G P F + V V
Sbjct: 123 EAGVEVVTPISHTLYDTDMLVARNGGAAPLTMQSFTKLVDRVGDPPAPAPDPPAAMPPPA 182
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+ +PS G +P+ ++G + P KGGETEAL RL E
Sbjct: 183 EDMPSAAPAATG-VPTWQEVGFKE------------PPLTVFKGGETEALARL-----EA 224
Query: 358 QAQPPKG----NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
Q PK K S + + +SP+L GCLS R L + A S+
Sbjct: 225 AFQDPKWVAGFQKPDTDPSAWEKPATTVLSPYLKFGCLSARLFHARLLEVYRRHPAHSQP 284
Query: 414 NDGESGSSGAGSNWLMFELLWRDFF 438
G +LLWR+FF
Sbjct: 285 PVSLRG-----------QLLWREFF 298
>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
Length = 559
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 97/370 (26%), Positives = 152/370 (41%), Gaps = 73/370 (19%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AA + ++VWFR LRVHDN +L+ + + PV+ DP S + G R
Sbjct: 8 AAAKGRTLVWFRKALRVHDNPALSRGTLHATACQPVFVLDPWFCQPS-----RVGANRMR 62
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL++S+ DL L+ARGS L+V G+P VL K D+V ++ + +
Sbjct: 63 FLLQSLRDLDAQLRARGSSLLVLHGEPRVVLPRACKKWRVDSVTWEHDIEPYAKIRDAAV 122
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEI-RKTIEALDQL 297
A++ G+E G TLY +D++ K G PT Y GF + V + I+A++++
Sbjct: 123 RGALERAGVECHAASGHTLYDVDEMLEKCKGAPPTTYQGFFKIVDKMGAPNAPIDAMEKM 182
Query: 298 KGLPSRGDVEPG----------DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEA- 346
G + D E IP+L DLG G GGETE
Sbjct: 183 PGSFASSDEETKALVQGVADAYGIPTLEDLGYEPL---------GDDEGFPGVGGETEGL 233
Query: 347 -----LQRLKKFAAEYQ-----------------AQPPKG--------NKDGNHDSIYGA 376
+ K++ +++ PK +KDG+ S GA
Sbjct: 234 RRLRLMLARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSPFEIAAGRSKDGDA-STSGA 292
Query: 377 NF-----SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFE 431
+ +SP++ GC+SPR + EL + G LM +
Sbjct: 293 EALMIPSTTALSPYMKFGCVSPRVFYHELTAVYKEL----------EGKHSKPPTSLMGQ 342
Query: 432 LLWRDFFRFI 441
L+WR+F+ +
Sbjct: 343 LMWREFYYLV 352
>gi|121727641|ref|ZP_01680744.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
gi|121630028|gb|EAX62435.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V52]
Length = 462
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 143/326 (43%), Gaps = 37/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNTLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y V DE ++ +I
Sbjct: 63 NQTLADLNHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVVGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFPSVLIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G LLD+ +P ++ GGE L + + +
Sbjct: 179 P---IEQGWQLPLLDI-------------VAEPNHSAFIGGEQAGLTHCQNYFSSMLPSC 222
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 223 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 268
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 269 --STYWIFFELLWREYFYWYARRYGA 292
>gi|449436599|ref|XP_004136080.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 549
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 149/348 (42%), Gaps = 38/348 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFL 181
S++WFR +R+HDN +L A + + PV+ DP D S G + G R FL
Sbjct: 7 SLMWFRKGIRIHDNPALEYAAKGAKFLYPVFVIDPHYMEPDPSAFSLGSSRAGLNRIRFL 66
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ES+ DL NL+ GS L+V G+P VL+ K + + + +++
Sbjct: 67 LESLVDLDLNLKKLGSRLLVLHGEPGEVLIRCLKEWNVKKLCFEYDTDPYYQALDIRVQN 126
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
GIEV TL++ D+ K G P +Y F K+ G + L
Sbjct: 127 HASAAGIEVFSPVSHTLFNPADIIQKNGGSPPLSYQSFL-KLAGEPSWACAPLSTTVSSL 185
Query: 301 PSRGDV---EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----F 353
P GD E D+P++ DLG A K +GGETEAL+RLK+
Sbjct: 186 PPVGDTGRSEISDVPTIKDLGYEDMA---------KDDWTPFRGGETEALKRLKESMSFL 236
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
Q K K S + + +SP+L GCLS R + +++ ++
Sbjct: 237 IGSLQDWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYQCIQEIYKNVK----- 291
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFR---FITKKYSSAK--KVVEAVP 456
G + + L+ +LLWR+FF F T + K K+ + +P
Sbjct: 292 --GHTSPPVS----LVGQLLWREFFYTAAFGTPNFDRMKDNKICKQIP 333
>gi|419830295|ref|ZP_14353780.1| cryptochrome, DASH family protein [Vibrio cholerae HC-1A2]
gi|419833974|ref|ZP_14357429.1| cryptochrome, DASH family protein [Vibrio cholerae HC-61A2]
gi|422917675|ref|ZP_16951993.1| cryptochrome DASH [Vibrio cholerae HC-02A1]
gi|423822581|ref|ZP_17716591.1| cryptochrome, DASH family protein [Vibrio cholerae HC-55C2]
gi|423855972|ref|ZP_17720396.1| cryptochrome, DASH family protein [Vibrio cholerae HC-59A1]
gi|423882846|ref|ZP_17723983.1| cryptochrome, DASH family protein [Vibrio cholerae HC-60A1]
gi|423998105|ref|ZP_17741357.1| cryptochrome DASH [Vibrio cholerae HC-02C1]
gi|424016998|ref|ZP_17756828.1| cryptochrome DASH [Vibrio cholerae HC-55B2]
gi|424019923|ref|ZP_17759709.1| cryptochrome DASH [Vibrio cholerae HC-59B1]
gi|424625288|ref|ZP_18063749.1| cryptochrome DASH [Vibrio cholerae HC-50A1]
gi|424629771|ref|ZP_18068059.1| cryptochrome DASH [Vibrio cholerae HC-51A1]
gi|424633819|ref|ZP_18071919.1| cryptochrome DASH [Vibrio cholerae HC-52A1]
gi|424636898|ref|ZP_18074906.1| cryptochrome DASH [Vibrio cholerae HC-55A1]
gi|424640811|ref|ZP_18078694.1| cryptochrome DASH [Vibrio cholerae HC-56A1]
gi|424648878|ref|ZP_18086541.1| cryptochrome DASH [Vibrio cholerae HC-57A1]
gi|443527798|ref|ZP_21093847.1| cryptochrome DASH [Vibrio cholerae HC-78A1]
gi|341636557|gb|EGS61251.1| cryptochrome DASH [Vibrio cholerae HC-02A1]
gi|408012865|gb|EKG50630.1| cryptochrome DASH [Vibrio cholerae HC-50A1]
gi|408018351|gb|EKG55804.1| cryptochrome DASH [Vibrio cholerae HC-52A1]
gi|408023529|gb|EKG60690.1| cryptochrome DASH [Vibrio cholerae HC-56A1]
gi|408024255|gb|EKG61376.1| cryptochrome DASH [Vibrio cholerae HC-55A1]
gi|408033158|gb|EKG69716.1| cryptochrome DASH [Vibrio cholerae HC-57A1]
gi|408055493|gb|EKG90418.1| cryptochrome DASH [Vibrio cholerae HC-51A1]
gi|408620068|gb|EKK93080.1| cryptochrome, DASH family protein [Vibrio cholerae HC-1A2]
gi|408634557|gb|EKL06792.1| cryptochrome, DASH family protein [Vibrio cholerae HC-55C2]
gi|408640875|gb|EKL12657.1| cryptochrome, DASH family protein [Vibrio cholerae HC-59A1]
gi|408640970|gb|EKL12751.1| cryptochrome, DASH family protein [Vibrio cholerae HC-60A1]
gi|408648796|gb|EKL20113.1| cryptochrome, DASH family protein [Vibrio cholerae HC-61A2]
gi|408852460|gb|EKL92282.1| cryptochrome DASH [Vibrio cholerae HC-02C1]
gi|408860086|gb|EKL99737.1| cryptochrome DASH [Vibrio cholerae HC-55B2]
gi|408867017|gb|EKM06379.1| cryptochrome DASH [Vibrio cholerae HC-59B1]
gi|443453670|gb|ELT17488.1| cryptochrome DASH [Vibrio cholerae HC-78A1]
Length = 461
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 141/327 (43%), Gaps = 40/327 (12%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + G P
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETISLSAPM-------GYP 173
Query: 302 S-RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
+E G L+D+ G +P + GGE L + + +
Sbjct: 174 HVLPPIEQGWQLPLMDI-------------GTEPNHCAFVGGEQAGLTHCQNYFSSMLPS 220
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 221 RYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND----- 267
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 ---STYWIFFELLWREYFYWYARRYGA 291
>gi|152994374|ref|YP_001339209.1| cryptochrome DASH [Marinomonas sp. MWYL1]
gi|150835298|gb|ABR69274.1| Cryptochrome DASH [Marinomonas sp. MWYL1]
Length = 441
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 134/323 (41%), Gaps = 37/323 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VWF +DLR D L A E ++ +YC +P + S R L +
Sbjct: 2 KLGLVWFGDDLRCADQNMLWRAVQEVDYLICLYCDEPHNNHPSRYATQGMSANRRRLLNQ 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL LQA G L V T L L I +Y + DE ++ +IE+
Sbjct: 62 GLQDLALQLQALGQTLFVSSMDAATSLNLLLNEIPISHLYRNHHGGWDEQQTLNRIESRY 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
D I + + G +L+ LPF + ++P ++ FR V+ +++ + AL +L P+
Sbjct: 122 SDVRIHLDH--GLSLFTPSQLPFDIAQLPDSFSKFRRLVENLDVFTPLPALQKLPPAPT- 178
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM-KGGETEALQRLKKFAAEYQAQPP 362
D+ + + Q+ NSM GGE A+ +L + + P
Sbjct: 179 -----------FDIQCIRPWQLKQI------EDNSMFTGGERAAVDQLSDY---FSTNLP 218
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K+ + + G S K SPWLA G LS R + SI + +
Sbjct: 219 SHYKE-TRNELDGWENSTKFSPWLAQGSLSARQI-------KASIDVYER-----DHGAN 265
Query: 423 AGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + Y
Sbjct: 266 ESTYWIYFELLWREYFHWYATCY 288
>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/332 (29%), Positives = 148/332 (44%), Gaps = 41/332 (12%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPY 176
A R S++WFR LRVHDN +L A+ S + PV+ DP D S G + G
Sbjct: 2 ATRSGSLIWFRKGLRVHDNPALEFASKGSEFMFPVFVIDPHYMESDPSAFSPGSSRAGVN 61
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R FL+ES+ DL +L+ GS L+V G+P VL + + + +
Sbjct: 62 RIRFLLESLKDLDSSLKKLGSRLLVLKGEPGEVLFRCLQEWKVKRLCFEYDTDPYYKALD 121
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALD 295
K++ G+EV TL++ D+ K G+ P +Y F K+ G E +
Sbjct: 122 VKVKDYASSTGVEVFSPVSHTLFNPADVIEKNGGKPPLSYQSFL-KIAGEPSCAKSELVM 180
Query: 296 QLKGLPSRGDV---EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
LP GDV ++PSL +LG + W +GGE+EAL+RL K
Sbjct: 181 SYSSLPPVGDVGNLGISEVPSLEELGYRDDDEQAD-W-------TPFRGGESEALKRLTK 232
Query: 353 ------FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
+ A ++ PKG+ S + + +SP+L GCLS R + L+
Sbjct: 233 SISDKAWVANFEK--PKGDP-----SAFLKPATTVMSPYLKFGCLSSRYFYQCLQNI--- 282
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ D + +S S L+ +LLWR+FF
Sbjct: 283 ------YKDVKKHTSPPVS--LLGQLLWREFF 306
>gi|392535677|ref|ZP_10282814.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas arctica A
37-1-2]
Length = 439
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 33/314 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN L+ E ++ V+ + + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRIDDNPILSELATEQCALDIVFVINTHWFKNNNYQQKPYGVHKQQFLMQSLF 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ L RG L V G+P +VL + D V V E + +++A
Sbjct: 66 ELQQELIERGQTLHVLEGEPVSVLKQRIAEQHIDEVVCSEHVGTYEQRQLARLKAHCPH- 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ K TL+ DLPF L E+P ++ FR+KV+ + I T L KGL
Sbjct: 125 -VIFKTTQQDTLFQQSDLPFDLDELPKSFTPFRKKVEAMNIPITTSTLP--KGL------ 175
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
+P + L + +++ H A M GG A LK++ ++ K +
Sbjct: 176 ----LPQPITLCAANPIELNE--HTNYNNA-VMNGGLKSAQTHLKQYFSDLLPSTYKITR 228
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
+ G N + K S WLA GC+S R ++ ++ + + +
Sbjct: 229 ----NEFDGFNNTTKFSTWLAFGCVSARQVYKAVEAYE------------HNQITNESTY 272
Query: 427 WLMFELLWRDFFRF 440
W+ FELLWR++F++
Sbjct: 273 WIKFELLWREYFKW 286
>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
CCMP1335]
gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1, partial [Thalassiosira pseudonana
CCMP1335]
Length = 556
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/337 (29%), Positives = 142/337 (42%), Gaps = 46/337 (13%)
Query: 125 ASIVWFRNDLRVHDN----ESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
++ WFR LRVHDN +L + S + PVY DP Y K RA F
Sbjct: 14 VAMHWFRKGLRVHDNPALLHALAITKDTSGPIYPVYIVDPNCYQ-----LLKCSVLRARF 68
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHD--EVKSEEK 238
L+E +SDL K+L+ RGS L V G P VL EL K G V + + + V +E
Sbjct: 69 LLECISDLDKSLRERGSRLYVATGDPLEVLPELWKEWGVTHVTHEADETGEPYAVARDEG 128
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + K G++V F TL L ++P GG+ V G + + +
Sbjct: 129 VRSVAKKNGVQVMEFRSETLRPLGNVP----------GGYVANVGGA-VNSVPSTMSSFQ 177
Query: 299 GLPSRGDVEPGDIPSLLDL-------GLSQSAAMSQVWHGGKPA-------ANSMKGGET 344
GL G ++ G+IP LD LS ++ P+ +KGGET
Sbjct: 178 GL--LGRIDGGNIPLPLDAPTKEEFPQLSDDDDSNKYLPLEHPSDCEDASLTGIVKGGET 235
Query: 345 EALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTA 404
AL +L+ K + + +SP+L++GCLSPR + +
Sbjct: 236 LALAQLQSTVTARPDWTASFEKPKTSCTEVSTPSTTVLSPYLSLGCLSPRKAWHAVAD-- 293
Query: 405 TSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFI 441
+ A+SK N + S G +LLWRDF I
Sbjct: 294 ANRKASSKVNKTKPPVSLHG------QLLWRDFNNLI 324
>gi|156977901|ref|YP_001448807.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
gi|156529495|gb|ABU74580.1| hypothetical protein VIBHAR_06693 [Vibrio harveyi ATCC BAA-1116]
Length = 460
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 140/327 (42%), Gaps = 52/327 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR-----DYGKSSSGFDKTGPYRASFL 181
+ WF NDLR+HDN L A+ E +++ VYC+ P+ + S F G + FL
Sbjct: 17 LYWFTNDLRMHDNPLLARASEEVDALIFVYCY-PKLSPFLAHFAQESMF---GSAKQQFL 72
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
ES+ + L A L V P + + + +Y +E + I
Sbjct: 73 DESLHCVNLTLNAFDQRLQVVDLHPYQAIKHAVEKLCVTHLYCDTFPGSEERDVVDHIRQ 132
Query: 242 AMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
++ I EV+ +L ++DLPF L ++P + FR+K + V + + + L
Sbjct: 133 ELEHLTICQQEVR-----SLLTVEDLPFALEDLPDTFTKFRKKAENVSLEEPFATVTALP 187
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
PS L L + V KP GGE L+ +++ +
Sbjct: 188 PTPS-------------GLALPTLRLIRDV----KPCL--FTGGEQAGLEHARRYFSSTL 228
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
A K ++G + G ++S K SPWLA GCLSP++++ LK+ A
Sbjct: 229 ASEYKQTRNG----LDGMDYSTKFSPWLAHGCLSPKTIYAMLKRYERLKGA--------- 275
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + +++
Sbjct: 276 ---NESTYWIYFELLWREYFYWYARRH 299
>gi|424044342|ref|ZP_17781965.1| cryptochrome DASH [Vibrio cholerae HENC-03]
gi|408888871|gb|EKM27332.1| cryptochrome DASH [Vibrio cholerae HENC-03]
Length = 410
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 128/272 (47%), Gaps = 43/272 (15%)
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
+ FL ES+ L +L A L V P + A +G +Y DE
Sbjct: 18 KQQFLDESLHCLNLSLNALNQRLQVVDLHPYQAVKHAADKLGVTHLYVDAVAGSDEQDVV 77
Query: 237 EKIEAAMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+KI+A + EV+ +L+ ++DLPF+L +P + FR+KV+ + + + +EA
Sbjct: 78 DKIQAEAPHLAVIQSEVR-----SLFSVEDLPFELEALPDTFTKFRKKVEKLALAEPVEA 132
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF 353
+ L LP D +L L L++ +P+ GGE L+ +++
Sbjct: 133 VTTLPPLP--------DGLALPTLSLTRDI---------QPSL--FTGGERAGLEHCRQY 173
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
A A K ++G + G ++S K SPWLA GCLSP++++ LK+ AA+
Sbjct: 174 FASTLASEYKQTRNG----LDGMDYSTKFSPWLAHGCLSPKTIYAMLKR----YEAANGA 225
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
ND + W+ FELLWR++F + ++Y
Sbjct: 226 ND--------STYWIYFELLWREYFYWYARRY 249
>gi|429851356|gb|ELA26551.1| cryptochrome dash [Colletotrichum gloeosporioides Nara gc5]
Length = 690
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 157/367 (42%), Gaps = 57/367 (15%)
Query: 127 IVWFRNDLRVHDNESLN----TANNESVSVLPVYCFDP---------RDYGKSS------ 167
I R+DLR+ DN L+ ++++ VLPVY F RD KS
Sbjct: 8 IYLLRHDLRIADNPILHHLATSSDHGFTHVLPVYIFPAHQIEISGFLRDGSKSKYPEARS 67
Query: 168 --SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-----AD 220
F + GP+R F+ +SV +L+++L+ GSDL +R G V+ EL +
Sbjct: 68 EIGKFWRCGPHRTKFIAQSVWNLKESLEGVGSDLCLRAGMFGDVVDELLRGFSDSKYKVG 127
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EMPTNYGG 277
AV+ E + +E K E + AA G+ K W Y +DD L ++ +
Sbjct: 128 AVWMTAEEAVEEKKDEMAVAAACSKHGVNFKT-WLDEKYFIDDRDLGLKNPEDLDNVFTA 186
Query: 278 FREKVKGVEIRKTIEALDQLKG----------LPSRGDVEPGDIPSLLDLGLSQSAAMSQ 327
FR+ + + K L Q K LP++ P ++PS D +SA +
Sbjct: 187 FRKTQEPLR-EKPKPTLPQPKKSAIKPYPKDLLPTQS--SPYEVPS-DDYSKLESALLKP 242
Query: 328 VWH---------GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANF 378
+ + + GGE+EA RL K ++G + G +F
Sbjct: 243 LTSPFTDDPKIPDKAKSVHPFHGGESEARSRLHHLVKSGAMTEYKNTRNG----LLGVDF 298
Query: 379 SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
S K+S +L++GCL+ R + + L + + K G G+ + FELLWRD+
Sbjct: 299 STKLSAFLSLGCLTSRQIHEALVQFEDGTNEDFKETSGYGKGENDGTKAVRFELLWRDYM 358
Query: 439 RFITKKY 445
R T+K+
Sbjct: 359 RLCTRKF 365
>gi|416411248|ref|ZP_11688726.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260330|gb|EHJ09764.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 222
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 28/182 (15%)
Query: 268 LGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMS 326
+ ++P + FR+KV K + + + +L+ LP D+E G++PSL +L L + S
Sbjct: 1 MSKLPEVFTSFRKKVEKNSTVNPILISPRKLRSLP---DIEVGNVPSLEELELEKPKYDS 57
Query: 327 QVWHGGKPAANSMKGGETEALQRLKKFAAEYQA-QPPKGNKDGNHDSIYGANFSCKISPW 385
+ KGGETE +QRL + E + K ++G + GA++S K SPW
Sbjct: 58 R-------GVLEFKGGETEGIQRLNNYFWERNCLKEYKETRNG----MLGADYSSKFSPW 106
Query: 386 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
LA GCLSPR +++E++K E + WL+FELLWRD+FRFI+ K+
Sbjct: 107 LANGCLSPRYIYEEVQKYE------------EKRIKNNSTYWLIFELLWRDYFRFISAKH 154
Query: 446 SS 447
+
Sbjct: 155 GN 156
>gi|387015302|gb|AFJ49770.1| Cryptochrome-2-like [Crotalus adamanteus]
Length = 590
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 145/340 (42%), Gaps = 57/340 (16%)
Query: 116 PNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGP 175
P +G S+ WFR LR+HDN +L A E+ SV +Y DP S+ G +
Sbjct: 11 PRSGGGC--CSVHWFRRGLRLHDNPALQAAIREATSVRCIYILDPWFAASSAVGIN---- 64
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL++S+ DL +L+ S L V G+P V L K G H +D
Sbjct: 65 -RWRFLLQSLEDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGV----THLTFEYDSEPF 119
Query: 236 EEKIEAAM----KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK- 289
E+ +AA+ K+ G++V TLY LD + G P Y F+ + +++ K
Sbjct: 120 GEERDAAIVKLAKEAGVKVTTENSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMDLPKK 179
Query: 290 -----TIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGET 344
T + ++ + E +PSL +LG VW +GGET
Sbjct: 180 PVSTITSQQMEMCQTKIQENHDETYGVPSLEELGFFTEGLAPAVW----------QGGET 229
Query: 345 EALQRLKK------FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 398
EAL RL K + A Y+ P+ N + S G +SP+L GCLS R +
Sbjct: 230 EALTRLDKHLERKAWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYY 281
Query: 399 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
L + + + S+ S L +LLWR+FF
Sbjct: 282 RLWELYKKV---------KRNSTPPLS--LYGQLLWREFF 310
>gi|271963152|ref|YP_003337348.1| deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
gi|270506327|gb|ACZ84605.1| Deoxyribodipyrimidine photo-lyase [Streptosporangium roseum DSM
43021]
Length = 425
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 145/328 (44%), Gaps = 65/328 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IV F DLRVHD+ +L A ++ V+P++ DP G +RA FL ES+
Sbjct: 5 IVLFNRDLRVHDHPALAAACADAWRVVPLFVIDP----------GVPGGHRAGFLAESLD 54
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR +L+ RG DLVVR G P + LA+ + A AVY +VS + E ++ +
Sbjct: 55 DLRGSLRERGGDLVVRQGDPVAETLRLARELPAQAVYVSADVSALAQRRERRLAEECERH 114
Query: 247 GIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+E + F G T+ D L P G+ + + G R+ + A +++
Sbjct: 115 RMEFRAFPGVTIVPPDALRPSGGGDHYRVFTPYWRVWSGQRRREVLGAPAKVR------- 167
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK---KFAAEYQAQPP 362
IP L+ G A G +GGET A +R++ K+ E A
Sbjct: 168 -----IPEGLEAGPLPVA--------GHEPHGLFRGGETVARERMRQWLKYCVEDYA--- 211
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
DG HD + G N + K+SP+L GCLSP + S+S E+G
Sbjct: 212 ----DG-HDDLAG-NRTSKLSPYLRFGCLSPLEL--------ESLS--------ENGDD- 248
Query: 423 AGSNWLMFELLWRDFFRFITKKYSSAKK 450
+ +L WRDFF +T+ + +
Sbjct: 249 -----FVRQLCWRDFFHQVTRAFPRINR 271
>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
Length = 568
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 144/327 (44%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L +A + SV VY DP + SSSG G R FL++S
Sbjct: 8 SSVHWFRKGLRLHDNPALLSALRGANSVRCVYILDPW-FAASSSG----GVNRWRFLLQS 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 63 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAK 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G P Y F+ + +EI + T + ++
Sbjct: 123 EGGVEVVVENSHTLYDLDRIIELNGHSPPLTYKRFQAIISRMEIPRRPAPSVTRQQMEAC 182
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------K 351
+ R E +PSL +LG + S +W GGETEAL RL K
Sbjct: 183 RAEIKRNHDETYGVPSLEELGFHRENKGSAIW----------PGGETEALARLDRHLERK 232
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS + + L++ +
Sbjct: 233 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCKLFYYRLQELYRKV---- 280
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N+ S L +LLWR+FF
Sbjct: 281 KKNNPPPLS-------LFGQLLWREFF 300
>gi|343510119|ref|ZP_08747374.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
gi|342803146|gb|EGU38524.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
Length = 446
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 136/323 (42%), Gaps = 40/323 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD-KTGPYRASFLIESV 185
+ WF DLR+ +N L A E +++ +YC + + + + FL +S
Sbjct: 7 LYWFTQDLRIENNPLLQRAAQEVDTLICLYCVPKMTRFITHYAHEHRFSAAKIQFLSQSA 66
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L+K+L A G LVV P L + D +Y V DE + +++
Sbjct: 67 KCLQKSLTALGQQLVVTTSTPYAKLQRIIHDHSVDHLYCDAFVGTDEKQVLRQLKEQFPS 126
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ + +L+ DLPF+L +P+ + FR K +E LD+ P+R
Sbjct: 127 LIVTQDHV--RSLFRKSDLPFELNALPSTFTQFR---------KQVEELDK----PARNT 171
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM-KGGETEALQRLKKFAAEYQAQPPKG 364
P L + W P ++ +GGE L ++ Y + P
Sbjct: 172 TTTRLPPPL-------QIQFEETWPKLPPTQPALFEGGELAGLTHCQR----YFSSPLPQ 220
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
+ + + G ++S K+SPWLA+GCLSP T S+ A + G + S
Sbjct: 221 HYKQTRNELDGMDYSTKLSPWLAIGCLSP--------CTILSMLAEHEHQFGRNES---- 268
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + K+ +
Sbjct: 269 TYWISFELLWREYFYWSAMKHGA 291
>gi|432852920|ref|XP_004067451.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 521
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 139/323 (43%), Gaps = 41/323 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
I WFR LR+HDN +L A + + P++ DP Y ++ +G + R FLI S
Sbjct: 4 VCIHWFRKGLRLHDNPALMAALRDCKELYPLFILDPYLYDQNLAGIN-----RLRFLISS 58
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V GKPE VL +L + + ++ + +
Sbjct: 59 LQDLDCSLRKLNSRLFVVRGKPEEVLPKLFTKWNVTKLTYEYDTEPYSRSRDKNVTMLAE 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRK------TIEALDQL 297
++ I+V Y TLY +D + + G+ P Y R+ VK + K T+E + +
Sbjct: 119 EQRIQVIYKISHTLYDIDRIIEENNGKPPLTYNRLRDIVKALGSPKKPIPAPTVEDMKNI 178
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE- 356
+ E G IPSL +LGL S+ ++ GGE EAL+RL +
Sbjct: 179 APFSEKHKPEYG-IPSLEELGLDTSSLAEEI----------FPGGEQEALRRLDTYMQRP 227
Query: 357 -YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ K N N S + +SP++ GCLS R+ + L + K +D
Sbjct: 228 GWVCSFEKPNTSPNSLS----PSTTVLSPYVTFGCLSARTFWWRL----AEVYQGKKHSD 279
Query: 416 GESGSSGAGSNWLMFELLWRDFF 438
G +LLWR+FF
Sbjct: 280 PPVSLHG--------QLLWREFF 294
>gi|449018268|dbj|BAM81670.1| 6-4 photolyase [Cyanidioschyzon merolae strain 10D]
Length = 519
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 141/327 (43%), Gaps = 43/327 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTA--NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
+++ WFR LR+HDN +L A N + VLPV+C DP + G + R +FL+
Sbjct: 9 SAVHWFRKGLRLHDNPALLDAVQNPTTTYVLPVFCLDPIFLRPETVGVN-----RMNFLL 63
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL + L+ S L V G P L + + + + + ++
Sbjct: 64 ECLQDLDQQLRKLHSRLFVLRGNPLEQLPVFFRKYHTRLLTFEFDTEPYAKQRDTQVRRL 123
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPT--NYGGFREKVKGVEIRKTIEALDQLKGL 300
+ GIEV+ TLY +D+ +LG+ PT Y F V + + + ALD
Sbjct: 124 CAELGIEVRTRATHTLYDPEDIRRELGDRPTPLTYKSFYAFVTE-RLGQPMSALD--APA 180
Query: 301 PSRG------DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
P+ G D++ +PSL +L Q G +GGETEAL+R++ F
Sbjct: 181 PASGFQTPDVDLDTYTVPSLSELEAYQ----------GLEVETPFRGGETEALRRMENFL 230
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
E + K + + + ++SP+ GCLSPR +F E ++ +
Sbjct: 231 RERADEVRSFAKPATSPTAWPVASTTQLSPYFKFGCLSPR-LFVERVRSLRPLQ------ 283
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFI 441
+ S G W WR+FF ++
Sbjct: 284 --QPPVSLIGQIW------WREFFTYV 302
>gi|417821168|ref|ZP_12467782.1| cryptochrome DASH [Vibrio cholerae HE39]
gi|423956045|ref|ZP_17734884.1| cryptochrome, DASH family protein [Vibrio cholerae HE-40]
gi|423985115|ref|ZP_17738433.1| cryptochrome, DASH family protein [Vibrio cholerae HE-46]
gi|340038799|gb|EGQ99773.1| cryptochrome DASH [Vibrio cholerae HE39]
gi|408657960|gb|EKL29035.1| cryptochrome, DASH family protein [Vibrio cholerae HE-40]
gi|408664513|gb|EKL35347.1| cryptochrome, DASH family protein [Vibrio cholerae HE-46]
Length = 461
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 142/326 (43%), Gaps = 38/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE +S +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLSQVEVTDIYVDAMAGSDERQSIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 178 P---IEQGWQLPLMDI-------------VTEPNHSAFIGGEQAGLTHCQNYFSSMLPSR 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 222 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 267
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --STYWIFFELLWREYFYWYARRYGA 291
>gi|85711299|ref|ZP_01042358.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
gi|85694800|gb|EAQ32739.1| Deoxyribodipyrimidine photolyase [Idiomarina baltica OS145]
Length = 441
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 146/328 (44%), Gaps = 40/328 (12%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
A + +VWF DLR+ DN +L A + ++ + D + + G + R +
Sbjct: 3 AKHQTGLVWFNLDLRLIDNLTLIRAAEQCQQLVCCFVIDESWFKGNRYGLNGISQPRWRY 62
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+ ++++DL +LQ G L++R G+P T + L + DAVY + E + + +
Sbjct: 63 IQQAIADLAASLQQHGQQLIIRKGQPTTEISTLISTLEVDAVYCSDDPGVYERRRWDTL- 121
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ I + TL +L F L E+P Y FR++ + + E + +AL QLK
Sbjct: 122 -VKRFPYITFERVSNHTLLTERELDFPLEELPATYSAFRKRFEPLAETFPSGQALSQLKA 180
Query: 300 LP--SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
LP R + P + G ++GGE A + L ++ +
Sbjct: 181 LPPMPRRTIASEHTPFVEPSGY-------------------LQGGELAAHEHLTQY---F 218
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
++ P K+ +++ S K+S LA+G +SPR + D L+ N
Sbjct: 219 KSSAPSHYKE-TRNALDNFADSTKLSAALALGNISPRQVIDALR------------NYEA 265
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ + + W++FEL+WR++F + +++
Sbjct: 266 TQGANESTYWIVFELMWREYFHWYLRRF 293
>gi|229515204|ref|ZP_04404664.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TMA 21]
gi|229347909|gb|EEO12868.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TMA 21]
Length = 462
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 143/326 (43%), Gaps = 37/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V + P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTLLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF + +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFAIEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 179 P---IEQGWQLPLMDI-------------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSR 222
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 223 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 268
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 269 --STYWIFFELLWREYFYWYARRYGA 292
>gi|315123107|ref|YP_004065113.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
gi|315016867|gb|ADT70204.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas sp. SM9913]
Length = 436
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 140/320 (43%), Gaps = 38/320 (11%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ + W +NDLR+ DN LN + + + V+ +P + ++ G ++ FL
Sbjct: 1 MKKRILYWLQNDLRIDDNPILNDLSQQQCELDIVFVINPAWFKSNNYQQKPYGVHKQRFL 60
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ +L++++ G L + G P VL + +G D V ++ V + +I A
Sbjct: 61 MQSLYELQESVLGLGQTLHILEGDPVRVLTQRINELGIDEVVYSEQIG---VYEQRQITA 117
Query: 242 AM-KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
K + K TLY LPF+L ++PT + FR+K++ I L +
Sbjct: 118 LKSKCATVVFKSVMQDTLYQQQQLPFELADLPTGFTPFRKKIEATGIS--------LSSV 169
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
P P I +S+ + + GG K G LQ + +
Sbjct: 170 PFSAKRLPPPIILCAKQPISEPPTGNPLLQGGH------KAGLAHCLQY-------FSSA 216
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
P K + + G + S K S WLA GC+S + +F + A + GE+ S
Sbjct: 217 LPSSYKI-TRNELGGFDNSTKFSSWLAFGCISAKQIFCAVD--------AYEAQHGENES 267
Query: 421 SGAGSNWLMFELLWRDFFRF 440
+ W+ FELLWR++F++
Sbjct: 268 ----TYWIKFELLWREYFKW 283
>gi|153800458|ref|ZP_01955044.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
gi|124124084|gb|EAY42827.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-3]
Length = 462
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 37/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE +S I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEVTDIYVDAMAGSDERQSIAHIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 179 P---IEQGWQLPLMDI-------------VTEPNHSAFVGGEQAGLTHCQHYFSSMLPSR 222
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 223 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 268
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 269 --STYWIFFELLWREYFYWYARRYGA 292
>gi|343496946|ref|ZP_08735031.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
gi|342820399|gb|EGU55222.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
Length = 444
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 141/322 (43%), Gaps = 41/322 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF NDLR+ DN +L A ++ +YC DPR G R SFL++S+
Sbjct: 4 AVYWFTNDLRIEDNPALIRALQTENTLHCLYCLDPRSLKPGRYSTKPIGEKRLSFLLQSL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE---VKSEEKIEAA 242
++L + L+A G L V + P+ + L + Y+ R V H + +
Sbjct: 64 AELDETLRAFGQHLHVYLENPDDLFCRLYQQ------YSVRRVHHSVNAGLYEKAFFSRV 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ + + TL++ + LPF L ++P + FR+ V+ E R+ + + LP
Sbjct: 118 SQRSDVVLNASHSHTLFNPESLPFDLCDLPETFSKFRKLVEK-EKRRLVAPM-----LPP 171
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
EP L + S +Q+ + + GG AL+ L + + A
Sbjct: 172 TSWPEP--------LCANSSEWKTQL--ETNTGSEAFSGGCKSALRHLDSYFSTDNASRY 221
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++ D + S K SPWLA G LSP + LK+ ++ A ND
Sbjct: 222 KETRNALDD----WSSSTKFSPWLANGSLSPNLVLWLLKQYESTSGA----ND------- 266
Query: 423 AGSNWLMFELLWRDFFRFITKK 444
+ W+ FELLWR++F++ K
Sbjct: 267 -STYWIEFELLWREYFQWYAHK 287
>gi|153826234|ref|ZP_01978901.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
gi|417825035|ref|ZP_12471623.1| cryptochrome DASH [Vibrio cholerae HE48]
gi|149739999|gb|EDM54174.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae MZO-2]
gi|340046520|gb|EGR07450.1| cryptochrome DASH [Vibrio cholerae HE48]
Length = 461
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 142/326 (43%), Gaps = 38/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G LLD+ +P ++ GGE L + + +
Sbjct: 178 P---IEQGWQLPLLDI-------------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSR 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 222 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 267
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --STYWIFFELLWREYFYWYARRYGA 291
>gi|229529162|ref|ZP_04418552.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 12129(1)]
gi|229332936|gb|EEN98422.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 12129(1)]
Length = 461
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 142/326 (43%), Gaps = 38/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSCVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G LLD+ +P ++ GGE L + + +
Sbjct: 178 P---IEQGWQLPLLDI-------------VAEPNHSAFIGGEQAGLTHCQNYFSSMLPSC 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 222 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 267
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --STYWIFFELLWREYFYWYARRYGA 291
>gi|297579336|ref|ZP_06941264.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
gi|297536930|gb|EFH75763.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae RC385]
Length = 462
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 37/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLFPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 179 P---IEQGWQLPLMDI-------------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSR 222
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 223 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYTMLQRYEAVHGA----ND------ 268
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 269 --STYWIFFELLWREYFYWYARRYGA 292
>gi|406861424|gb|EKD14478.1| DASH family cryptochrome [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 660
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 169/385 (43%), Gaps = 89/385 (23%)
Query: 127 IVWFRNDLRVHDNESLN-----TANNESVSVLPVYCFDPRD---------------YGKS 166
I R DLR+ DN L+ T + +LP+Y F + Y ++
Sbjct: 8 IYLMRRDLRISDNPILHSLATTTKQHGFTHLLPLYVFSAQQLEVKGFIADSDIKSPYPEA 67
Query: 167 SS---GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA------I 217
S GF +TGP+R +FL E + D+++ L+ GS L +RVG V+ +L +
Sbjct: 68 RSPVGGFWRTGPHRVTFLAECIWDVKEGLEKLGSGLCIRVGTVGAVVDDLLSKFESKGEV 127
Query: 218 GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD--DLPF----KLGEM 271
AV+ E +E E +++ A ++ G++ + W Y +D DLP +L ++
Sbjct: 128 KVGAVWMVGEEGVEEAHEESQVKKACREAGVQFQ-LWTDEKYLIDDRDLPLPNIDELSDI 186
Query: 272 PTNYGGFREKVKGVEIRKTIEAL-----DQLKGLPSRGDV------------EPGDIPSL 314
T+Y RKT+E L D L +P++G + EP IP
Sbjct: 187 FTSY------------RKTVEPLRDHPRDALP-VPTKGALPPFPAESIPDQREPFTIPGS 233
Query: 315 LD---------LGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
LD L + G +A+ GGE++A RL+ KGN
Sbjct: 234 LDDLQKALLKPLNAEDLVRNPPPYPAGTTSAHPFLGGESQAQDRLEYLIT-------KGN 286
Query: 366 KDGNH---DSIYGANFSCKISPWLAMGCLSPRSMFDELK--KTATSISAASKWNDGESGS 420
H + + G +FS K+S +L++GC++ R + L + T+ + AS G+ +
Sbjct: 287 VVNYHSTRNGLLGHDFSTKLSAYLSLGCITSRQIHASLLAFENGTNAAYASVPEYGKGQN 346
Query: 421 SGAGSNWLMFELLWRDFFRFITKKY 445
G S + FELLWRD+ R T+K+
Sbjct: 347 DGTKS--IRFELLWRDYMRLCTRKF 369
>gi|381394100|ref|ZP_09919818.1| cryptochrome DASH [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379330372|dbj|GAB54951.1| cryptochrome DASH [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 435
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 138/329 (41%), Gaps = 50/329 (15%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FR+DLR+ DNE+L+ NE V+ Y FDP + +S G G +R +FL + + L
Sbjct: 13 FRHDLRIDDNEALHKLVNECDYVVAAYIFDPENLRRSKYGHCHLGKHRHTFLDQGLLALE 72
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
L DL + G P + EL D + H +E+K A ++ +
Sbjct: 73 AALNDANIDLHMFSGDPVRNISELINNNNIDCI----SFEHHYGFNEQKQIAQLRKLHPK 128
Query: 250 VKYFWGSTLYHL--DDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSRGDV 306
G + Y L D LPF + +MP + FR KV K + +RK ++
Sbjct: 129 THLIDGQSHYLLMHDALPFDMADMPDVFSPFRRKVEKNLTVRKHLQEY------------ 176
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKP----------AANSMKGGETEALQRLKKFAAE 356
+ + LSQ+ ++ + +P + N GGE A R+ +
Sbjct: 177 ----LKEEFNQKLSQTLSVHKPLLNTEPLVSYKPKHTSSKNGYTGGEENARARINDYFFN 232
Query: 357 YQA-QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ K ++G + G +FS + S +LA G +SP + +L T A ND
Sbjct: 233 TDSIASYKETRNG----LDGWDFSSRFSAYLAAGFVSPAYINQQL----TKYEAQRVKND 284
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKK 444
+ WL FELLWR+FF KK
Sbjct: 285 --------STYWLFFELLWREFFHLQAKK 305
>gi|15641816|ref|NP_231448.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121585836|ref|ZP_01675630.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
gi|147674040|ref|YP_001217353.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
gi|153817785|ref|ZP_01970452.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
gi|153821143|ref|ZP_01973810.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
gi|227081943|ref|YP_002810494.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|227118263|ref|YP_002820159.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|229508087|ref|ZP_04397592.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae BX 330286]
gi|229511674|ref|ZP_04401153.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae B33]
gi|229518813|ref|ZP_04408256.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC9]
gi|229607648|ref|YP_002878296.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae MJ-1236]
gi|254848903|ref|ZP_05238253.1| cryptochrome DASH [Vibrio cholerae MO10]
gi|255745421|ref|ZP_05419370.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholera CIRS 101]
gi|262169806|ref|ZP_06037497.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC27]
gi|360035700|ref|YP_004937463.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O1 str. 2010EL-1786]
gi|417813861|ref|ZP_12460514.1| cryptochrome DASH [Vibrio cholerae HC-49A2]
gi|417817599|ref|ZP_12464228.1| cryptochrome DASH [Vibrio cholerae HCUF01]
gi|418334835|ref|ZP_12943749.1| cryptochrome DASH [Vibrio cholerae HC-06A1]
gi|418338454|ref|ZP_12947348.1| cryptochrome DASH [Vibrio cholerae HC-23A1]
gi|418346371|ref|ZP_12951133.1| cryptochrome DASH [Vibrio cholerae HC-28A1]
gi|418350132|ref|ZP_12954863.1| cryptochrome DASH [Vibrio cholerae HC-43A1]
gi|418355774|ref|ZP_12958493.1| cryptochrome DASH [Vibrio cholerae HC-61A1]
gi|419826796|ref|ZP_14350295.1| cryptochrome, DASH family protein [Vibrio cholerae CP1033(6)]
gi|421317849|ref|ZP_15768417.1| cryptochrome DASH [Vibrio cholerae CP1032(5)]
gi|421321591|ref|ZP_15772144.1| cryptochrome DASH [Vibrio cholerae CP1038(11)]
gi|421325388|ref|ZP_15775912.1| cryptochrome DASH [Vibrio cholerae CP1041(14)]
gi|421329050|ref|ZP_15779560.1| cryptochrome DASH [Vibrio cholerae CP1042(15)]
gi|421336544|ref|ZP_15787005.1| cryptochrome DASH [Vibrio cholerae CP1048(21)]
gi|421339978|ref|ZP_15790410.1| cryptochrome DASH [Vibrio cholerae HC-20A2]
gi|421348128|ref|ZP_15798505.1| cryptochrome DASH [Vibrio cholerae HC-46A1]
gi|422896922|ref|ZP_16934375.1| cryptochrome DASH [Vibrio cholerae HC-40A1]
gi|422903121|ref|ZP_16938101.1| cryptochrome DASH [Vibrio cholerae HC-48A1]
gi|422907006|ref|ZP_16941813.1| cryptochrome DASH [Vibrio cholerae HC-70A1]
gi|422913856|ref|ZP_16948362.1| cryptochrome DASH [Vibrio cholerae HFU-02]
gi|422926062|ref|ZP_16959076.1| cryptochrome DASH [Vibrio cholerae HC-38A1]
gi|423145381|ref|ZP_17132975.1| cryptochrome DASH [Vibrio cholerae HC-19A1]
gi|423150057|ref|ZP_17137371.1| cryptochrome DASH [Vibrio cholerae HC-21A1]
gi|423153877|ref|ZP_17141058.1| cryptochrome DASH [Vibrio cholerae HC-22A1]
gi|423156960|ref|ZP_17144053.1| cryptochrome DASH [Vibrio cholerae HC-32A1]
gi|423160531|ref|ZP_17147471.1| cryptochrome DASH [Vibrio cholerae HC-33A2]
gi|423165349|ref|ZP_17152080.1| cryptochrome DASH [Vibrio cholerae HC-48B2]
gi|423731368|ref|ZP_17704671.1| cryptochrome, DASH family protein [Vibrio cholerae HC-17A1]
gi|423766383|ref|ZP_17712789.1| cryptochrome, DASH family protein [Vibrio cholerae HC-50A2]
gi|423895259|ref|ZP_17727006.1| cryptochrome, DASH family protein [Vibrio cholerae HC-62A1]
gi|423930697|ref|ZP_17731400.1| cryptochrome, DASH family protein [Vibrio cholerae HC-77A1]
gi|424002812|ref|ZP_17745887.1| cryptochrome DASH [Vibrio cholerae HC-17A2]
gi|424006601|ref|ZP_17749571.1| cryptochrome DASH [Vibrio cholerae HC-37A1]
gi|424024582|ref|ZP_17764233.1| cryptochrome DASH [Vibrio cholerae HC-62B1]
gi|424027467|ref|ZP_17767070.1| cryptochrome DASH [Vibrio cholerae HC-69A1]
gi|424586738|ref|ZP_18026317.1| cryptochrome DASH [Vibrio cholerae CP1030(3)]
gi|424595385|ref|ZP_18034706.1| cryptochrome DASH [Vibrio cholerae CP1040(13)]
gi|424606991|ref|ZP_18045935.1| cryptochrome DASH [Vibrio cholerae CP1050(23)]
gi|424610816|ref|ZP_18049655.1| cryptochrome DASH [Vibrio cholerae HC-39A1]
gi|424613626|ref|ZP_18052414.1| cryptochrome DASH [Vibrio cholerae HC-41A1]
gi|424617609|ref|ZP_18056281.1| cryptochrome DASH [Vibrio cholerae HC-42A1]
gi|424622387|ref|ZP_18060895.1| cryptochrome DASH [Vibrio cholerae HC-47A1]
gi|424645352|ref|ZP_18083088.1| cryptochrome DASH [Vibrio cholerae HC-56A2]
gi|424653119|ref|ZP_18090499.1| cryptochrome DASH [Vibrio cholerae HC-57A2]
gi|424656941|ref|ZP_18094226.1| cryptochrome DASH [Vibrio cholerae HC-81A2]
gi|440710021|ref|ZP_20890672.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 4260B]
gi|443504179|ref|ZP_21071137.1| cryptochrome DASH [Vibrio cholerae HC-64A1]
gi|443508076|ref|ZP_21074840.1| cryptochrome DASH [Vibrio cholerae HC-65A1]
gi|443511919|ref|ZP_21078557.1| cryptochrome DASH [Vibrio cholerae HC-67A1]
gi|443515477|ref|ZP_21081988.1| cryptochrome DASH [Vibrio cholerae HC-68A1]
gi|443519268|ref|ZP_21085665.1| cryptochrome DASH [Vibrio cholerae HC-71A1]
gi|443524161|ref|ZP_21090374.1| cryptochrome DASH [Vibrio cholerae HC-72A2]
gi|443531760|ref|ZP_21097774.1| cryptochrome DASH [Vibrio cholerae HC-7A1]
gi|443535556|ref|ZP_21101434.1| cryptochrome DASH [Vibrio cholerae HC-80A1]
gi|443539103|ref|ZP_21104957.1| cryptochrome DASH [Vibrio cholerae HC-81A1]
gi|449055752|ref|ZP_21734420.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae O1 str. Inaba G4222]
gi|81858080|sp|Q9KR33.1|CRYD_VIBCH RecName: Full=Cryptochrome DASH
gi|9656339|gb|AAF94962.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549974|gb|EAX59992.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 2740-80]
gi|126511605|gb|EAZ74199.1| cryptochrome, DASH family [Vibrio cholerae NCTC 8457]
gi|126521339|gb|EAZ78562.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae B33]
gi|146315923|gb|ABQ20462.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O395]
gi|227009831|gb|ACP06043.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|227013713|gb|ACP09923.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|229343502|gb|EEO08477.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC9]
gi|229351639|gb|EEO16580.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae B33]
gi|229355592|gb|EEO20513.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae BX 330286]
gi|229370303|gb|ACQ60726.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae MJ-1236]
gi|254844608|gb|EET23022.1| cryptochrome DASH [Vibrio cholerae MO10]
gi|255737251|gb|EET92647.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholera CIRS 101]
gi|262022040|gb|EEY40750.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae RC27]
gi|340036347|gb|EGQ97323.1| cryptochrome DASH [Vibrio cholerae HC-49A2]
gi|340037322|gb|EGQ98297.1| cryptochrome DASH [Vibrio cholerae HCUF01]
gi|341621681|gb|EGS47418.1| cryptochrome DASH [Vibrio cholerae HC-70A1]
gi|341621766|gb|EGS47499.1| cryptochrome DASH [Vibrio cholerae HC-48A1]
gi|341622516|gb|EGS48170.1| cryptochrome DASH [Vibrio cholerae HC-40A1]
gi|341637517|gb|EGS62195.1| cryptochrome DASH [Vibrio cholerae HFU-02]
gi|341646268|gb|EGS70382.1| cryptochrome DASH [Vibrio cholerae HC-38A1]
gi|356417544|gb|EHH71159.1| cryptochrome DASH [Vibrio cholerae HC-06A1]
gi|356418417|gb|EHH72014.1| cryptochrome DASH [Vibrio cholerae HC-21A1]
gi|356422991|gb|EHH76452.1| cryptochrome DASH [Vibrio cholerae HC-19A1]
gi|356428437|gb|EHH81663.1| cryptochrome DASH [Vibrio cholerae HC-22A1]
gi|356430096|gb|EHH83305.1| cryptochrome DASH [Vibrio cholerae HC-23A1]
gi|356433450|gb|EHH86639.1| cryptochrome DASH [Vibrio cholerae HC-28A1]
gi|356440047|gb|EHH93008.1| cryptochrome DASH [Vibrio cholerae HC-32A1]
gi|356444628|gb|EHH97437.1| cryptochrome DASH [Vibrio cholerae HC-43A1]
gi|356445628|gb|EHH98430.1| cryptochrome DASH [Vibrio cholerae HC-33A2]
gi|356451161|gb|EHI03862.1| cryptochrome DASH [Vibrio cholerae HC-48B2]
gi|356452272|gb|EHI04951.1| cryptochrome DASH [Vibrio cholerae HC-61A1]
gi|356646854|gb|AET26909.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae O1 str. 2010EL-1786]
gi|395916107|gb|EJH26937.1| cryptochrome DASH [Vibrio cholerae CP1032(5)]
gi|395917226|gb|EJH28054.1| cryptochrome DASH [Vibrio cholerae CP1041(14)]
gi|395918585|gb|EJH29409.1| cryptochrome DASH [Vibrio cholerae CP1038(11)]
gi|395927584|gb|EJH38347.1| cryptochrome DASH [Vibrio cholerae CP1042(15)]
gi|395931643|gb|EJH42387.1| cryptochrome DASH [Vibrio cholerae CP1048(21)]
gi|395939261|gb|EJH49943.1| cryptochrome DASH [Vibrio cholerae HC-20A2]
gi|395942707|gb|EJH53383.1| cryptochrome DASH [Vibrio cholerae HC-46A1]
gi|395959122|gb|EJH69569.1| cryptochrome DASH [Vibrio cholerae HC-56A2]
gi|395959778|gb|EJH70193.1| cryptochrome DASH [Vibrio cholerae HC-57A2]
gi|395962525|gb|EJH72821.1| cryptochrome DASH [Vibrio cholerae HC-42A1]
gi|395971040|gb|EJH80741.1| cryptochrome DASH [Vibrio cholerae HC-47A1]
gi|395973659|gb|EJH83213.1| cryptochrome DASH [Vibrio cholerae CP1030(3)]
gi|408007371|gb|EKG45449.1| cryptochrome DASH [Vibrio cholerae HC-39A1]
gi|408013336|gb|EKG51062.1| cryptochrome DASH [Vibrio cholerae HC-41A1]
gi|408032519|gb|EKG69101.1| cryptochrome DASH [Vibrio cholerae CP1040(13)]
gi|408043366|gb|EKG79364.1| cryptochrome DASH [Vibrio cholerae CP1050(23)]
gi|408053819|gb|EKG88818.1| cryptochrome DASH [Vibrio cholerae HC-81A2]
gi|408607586|gb|EKK80989.1| cryptochrome, DASH family protein [Vibrio cholerae CP1033(6)]
gi|408623990|gb|EKK96942.1| cryptochrome, DASH family protein [Vibrio cholerae HC-17A1]
gi|408634132|gb|EKL06401.1| cryptochrome, DASH family protein [Vibrio cholerae HC-50A2]
gi|408654129|gb|EKL25271.1| cryptochrome, DASH family protein [Vibrio cholerae HC-77A1]
gi|408655059|gb|EKL26184.1| cryptochrome, DASH family protein [Vibrio cholerae HC-62A1]
gi|408845209|gb|EKL85325.1| cryptochrome DASH [Vibrio cholerae HC-37A1]
gi|408845982|gb|EKL86094.1| cryptochrome DASH [Vibrio cholerae HC-17A2]
gi|408870230|gb|EKM09510.1| cryptochrome DASH [Vibrio cholerae HC-62B1]
gi|408878770|gb|EKM17763.1| cryptochrome DASH [Vibrio cholerae HC-69A1]
gi|439974244|gb|ELP50421.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae 4260B]
gi|443431124|gb|ELS73676.1| cryptochrome DASH [Vibrio cholerae HC-64A1]
gi|443435282|gb|ELS81425.1| cryptochrome DASH [Vibrio cholerae HC-65A1]
gi|443438902|gb|ELS88617.1| cryptochrome DASH [Vibrio cholerae HC-67A1]
gi|443442887|gb|ELS96189.1| cryptochrome DASH [Vibrio cholerae HC-68A1]
gi|443447064|gb|ELT03719.1| cryptochrome DASH [Vibrio cholerae HC-71A1]
gi|443449495|gb|ELT09786.1| cryptochrome DASH [Vibrio cholerae HC-72A2]
gi|443457150|gb|ELT24547.1| cryptochrome DASH [Vibrio cholerae HC-7A1]
gi|443461096|gb|ELT32169.1| cryptochrome DASH [Vibrio cholerae HC-80A1]
gi|443465203|gb|ELT39863.1| cryptochrome DASH [Vibrio cholerae HC-81A1]
gi|448264791|gb|EMB02028.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae O1 str. Inaba G4222]
Length = 461
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 141/327 (43%), Gaps = 40/327 (12%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + G P
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETISLSAPM-------GYP 173
Query: 302 S-RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
+E G L+D+ +P ++ GGE L + + +
Sbjct: 174 HVLPPIEQGWQLPLMDI-------------VTEPNHSAFVGGEQAGLTHCQNYFSSLLPS 220
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 221 RYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND----- 267
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 ---STYWIFFELLWREYFYWYARRYGA 291
>gi|422923119|ref|ZP_16956282.1| cryptochrome DASH [Vibrio cholerae BJG-01]
gi|341644424|gb|EGS68634.1| cryptochrome DASH [Vibrio cholerae BJG-01]
Length = 461
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 140/332 (42%), Gaps = 50/332 (15%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR------KTIEALD 295
I + +L LPF L +P+ + FR++V+ + + + + ++
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSAPMGYPRVLPPIE 180
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
Q LP G V +P ++ GGE L + + +
Sbjct: 181 QGWQLPLMGIVT-------------------------EPNHSAFVGGEQAGLTHCQNYFS 215
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 216 SMLPSRYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND 267
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --------STYWIFFELLWREYFYWYARRYGA 291
>gi|261211882|ref|ZP_05926169.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
RC341]
gi|260839232|gb|EEX65864.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio sp.
RC341]
Length = 461
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 140/332 (42%), Gaps = 50/332 (15%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR------KTIEALD 295
I + +L LPF L +P+ + FR++V+ + + + + ++
Sbjct: 123 DFSSVHIHQQAL--RSLLSEPQLPFALEALPSTFTQFRKQVETLSLSAPMGYPRVLPPIE 180
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
Q LP G V +P ++ GGE L + + +
Sbjct: 181 QGWQLPLMGIVT-------------------------EPNHSAFIGGEQAGLTHCQNYFS 215
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 216 SMLPSRYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND 267
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --------STYWIFFELLWREYFYWYARRYGA 291
>gi|403373370|gb|EJY86604.1| Cryptochrome 5 [Oxytricha trifallax]
Length = 570
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 154/328 (46%), Gaps = 42/328 (12%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
A ++ +I WFR LR+HDN+ L +++ ++LP++ DP + K+ +K G R
Sbjct: 3 ALSKKLNIYWFRKALRLHDNKGLIDSSSTCTNLLPIFILDPW-FVKNE---EKVGTNRMK 58
Query: 180 FLIESVSDLRKNLQAR-GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
FLI+S+ DL K+LQ S+LV+ G+P + +LA ++ +Y + + K
Sbjct: 59 FLIDSLIDLNKSLQKEYDSNLVILYGQPAEIFEKLAHE--SEKLYFELDTEPYAQDRDRK 116
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + G++V G TL L DL GE NYG F++ ++ +I ++ +L
Sbjct: 117 VVQICEKAGVQVHRNTGHTLLKLSDLA-DAGETCKNYGDFQKFMRDKKIESPLDKPKELP 175
Query: 299 GLPSRGD-------VE-PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL 350
LP+ + +E D+PS+ DL ++ K GGET+AL+ +
Sbjct: 176 QLPNNYEKLLKHLKIEYSNDVPSISDLDRNE-----------KDVTTHFIGGETKALEIM 224
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+++ + + + +S+ + + +SP+L GCLS R +++K S
Sbjct: 225 EEYIKDKRRVNSFSKPFTSPNSLKPS--TTALSPYLKFGCLSIRLFHEKVKSVLRSDCTQ 282
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ L+ ++ WR+FF
Sbjct: 283 PPVS-------------LIGQIYWREFF 297
>gi|153214304|ref|ZP_01949321.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
gi|124115452|gb|EAY34272.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 1587]
Length = 462
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 37/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 179 P---IEQGWQLPLMDI-------------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSR 222
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 223 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 268
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 269 --STYWIFFELLWREYFYWYARRYGA 292
>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
Length = 479
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 139/319 (43%), Gaps = 37/319 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +IVWFR+DLR+ D+ +L+ A ++ +Y D + G +L
Sbjct: 7 RPAIVWFRDDLRMADHPALHEAAASGWPLICLYILD-----DVTPALHPLGAAARWWLRG 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+++DLR+NL+ +G L+ G E +L +LAK A +V+ H + E + +I +
Sbjct: 62 ALADLRRNLEKQGGTLLTLSGSAEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTL 121
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+++ EV WG+ L D + K G G F + ++ + + +EA PSR
Sbjct: 122 EEQECEVHAQWGTVLVDPDTVQTKQGGFYKVCGSFWKALQTHAVPEPLEA-------PSR 174
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQV--WHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
L D L++ + Q W G + + GE E + L+ F A
Sbjct: 175 LSFHAIPASVLSDARLNEDSLCPQAPDWAAG--FRKTWEPGEAEGQEHLEDFLKNSVAGY 232
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
P+G + + ++SP+LA G +SPR ++ L+K G+
Sbjct: 233 PRGRDRVAEEG------TSRLSPYLASGAVSPRQVWAALQK---------------HGAH 271
Query: 422 GAGSNWLMFELLWRDFFRF 440
G + EL WR+F R+
Sbjct: 272 TDGPRIFLSELGWREFARY 290
>gi|392574250|gb|EIW67387.1| hypothetical protein TREMEDRAFT_33591 [Tremella mesenterica DSM
1558]
Length = 661
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 140/336 (41%), Gaps = 62/336 (18%)
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPET---VLVE-LAKAIGADAVY 223
+ F +T PYR FL+ES+ LR + G DL++ G+P+ VL+E L + + V+
Sbjct: 99 ANFHRTSPYRLRFLLESIFYLRDTYRRSGGDLLIGYGRPDRLLPVLIEKLKETSEIEGVW 158
Query: 224 AHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283
A EV+ +E + +E A++ G+++ TL + DLPF + P Y FR+ +
Sbjct: 159 AQDEVTVEEKDMLDNLEVALQKIGVKMNKVDSKTLVAIKDLPFDRRQTPDVYTAFRKNCE 218
Query: 284 ----------------------GVEIRKTIEALD-----QLKGLPSRGDVEPGD------ 310
++I + L + LP V D
Sbjct: 219 GLGLSLGGMLKQPLRTSHLSQGNIKIDIDGQRLKPAPQMEFSTLPEGCGVLGKDTSVVEI 278
Query: 311 ----IPSLLDL----GLSQSAAMSQ---VWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
+ LLD G SQ+A + V+H +A +GGE AL+RL +
Sbjct: 279 YTKLVKPLLDTPPVGGWSQAAKDNNALPVFH--PSSAVPFEGGEKAALERLDDYVGHEDG 336
Query: 360 QPPKG-----NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ G + + G FS K S WL++GCLS R + + +
Sbjct: 337 KGWTGGGKAKQYKATRNGMIGEGFSTKFSCWLSLGCLSAREI-------GWRVGGLLEKV 389
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
D + + W++FELLWRDFF+ KY + K
Sbjct: 390 DRKDKDTYNNVYWIIFELLWRDFFQSTVYKYFFSSK 425
>gi|402075234|gb|EJT70705.1| hypothetical protein GGTG_11728 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 849
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 158/370 (42%), Gaps = 58/370 (15%)
Query: 123 RRASIVWFRNDLRVHDNESLNT----ANNESVSVLPVYCFD------------------P 160
R+ I R DLRV DN L+ ++ +LPV+ F P
Sbjct: 4 RKILIYLLRKDLRVTDNPVLHHLASHKDHGFTHMLPVFVFPAHQMEISGFVKDGSKSPYP 63
Query: 161 RDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGK----PETVLVELAKA 216
G+ S + + GPYRA F+ ESV +L+ + ++ S L +R G E +L L K
Sbjct: 64 EARGRVSR-YRRCGPYRAKFIAESVWNLKSSFESLDSGLELRAGMLKDVAEGLLDGLEKR 122
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD--DLPFKLG-EMPT 273
AV+ EV +E E+ + A + G E + W Y +D DL FK E+P
Sbjct: 123 GDTGAVWMTAEVCPEETADEDAVAAVCQQHGFEFQR-WVDEKYFVDDRDLNFKEAHELPQ 181
Query: 274 NYGGFREKVKGV--EIRKTI--EALDQLKGLPSRGDV----EPGDIPSLLD-------LG 318
+ +R+ V+ + + RKT+ A L P G + P IP + L
Sbjct: 182 IFTDYRKSVEPLRQKPRKTLPRPAPGSLPAFPEAGSIPEQAAPFVIPETYEKLEPALLLP 241
Query: 319 LSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANF 378
L GG +A+ GGE A +RL + K ++G + GA+F
Sbjct: 242 LKGPFETMLTLPGGSISAHPFHGGEDAAQERLVYVVSSGIISKYKQRRNG----LVGADF 297
Query: 379 SCKISPWLAMGCLSPRSMFDEL----KKTATSISAASKWNDGESGSSGAGSNWLMFELLW 434
S K+S +LA GC++ R + + L T ++ A + GE+ A + EL+W
Sbjct: 298 STKLSAYLAQGCITARQVHEALVGLEDGTDPTLEGAEGFGKGETDDIKA----VREELMW 353
Query: 435 RDFFRFITKK 444
RD+ R +K
Sbjct: 354 RDYMRLYARK 363
>gi|254224954|ref|ZP_04918569.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
gi|125622642|gb|EAZ50961.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae V51]
Length = 461
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 38/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 178 P---IEQGWQLPLMDI-------------VTEPNHSAFIGGEQAGLTHCQHYFSSMLPSC 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 222 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 267
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --STYWIFFELLWREYFYWYARRYGA 291
>gi|424659531|ref|ZP_18096780.1| cryptochrome DASH [Vibrio cholerae HE-16]
gi|408052086|gb|EKG87145.1| cryptochrome DASH [Vibrio cholerae HE-16]
Length = 462
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 37/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 179 P---IEQGWQLPLMDI-------------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSR 222
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 223 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 268
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 269 --STYWIFFELLWREYFYWYARRYGA 292
>gi|378731024|gb|EHY57483.1| deoxyribodipyrimidine photo-lyase [Exophiala dermatitidis
NIH/UT8656]
Length = 669
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 157/371 (42%), Gaps = 53/371 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNES-------VSVLPVYCF------------DPRDY 163
+R + R DLR+ DN + S VLP+Y DP
Sbjct: 4 QRVLVYLLRRDLRLCDNPVFYEIHKLSKQASPPFTHVLPIYVIPAQQVETSGFLPDPESI 63
Query: 164 -----GKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVEL---- 213
+S G F + GP+RA FL ESV L+++L+ GS L++RVG+ + ++
Sbjct: 64 SPFPEARSEVGKFWRCGPHRAVFLAESVWSLKQDLERVGSGLLIRVGQLGQIAQDVFDQF 123
Query: 214 ---AKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPFKL 268
A AV+ E +E + E ++ A + G+E K W Y +DD +P K
Sbjct: 124 RTQASDAIVSAVWMTSEEGVEEKREEREVRKAAQKAGVEFK-LWLDEKYFIDDRDVPLKK 182
Query: 269 -GEMPTNYGGFREKVKGVEI--RKTIEALDQLKGLPSRGDVEPG--DIPS---------L 314
++P + +R+ + + RK + L LPS +P IP L
Sbjct: 183 PSDLPDVFTAYRKSAEPLREAPRKPVSTPPSLPALPSFLPSQPAPFAIPDSFEGMKSALL 242
Query: 315 LDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIY 374
L A + G +A+ +GG E L R++ + K ++G +
Sbjct: 243 KPLNNQPLLADPPAFPPGVKSAHPFRGGSQEGLHRIQHLLKQGVMTRYKDTRNG----LL 298
Query: 375 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 434
G +FS K+S WLA+GC++ R + L + +G AG+ + FELLW
Sbjct: 299 GTDFSTKLSAWLALGCITARQVHARLVDYEEGYDDQYQGTEGYGKGENAGTAAVRFELLW 358
Query: 435 RDFFRFITKKY 445
RD+ R T+K+
Sbjct: 359 RDYMRLCTRKF 369
>gi|262191004|ref|ZP_06049214.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae CT 5369-93]
gi|262033105|gb|EEY51633.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae CT 5369-93]
Length = 461
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 38/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQTIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 178 P---IEQGWQLPLMDI-------------VTEPNHSAFIGGEQAGLTHCQNYFSSMLPSR 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 222 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 267
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --STYWIFFELLWREYFYWYARRYGA 291
>gi|254285235|ref|ZP_04960200.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
gi|421351561|ref|ZP_15801926.1| cryptochrome DASH [Vibrio cholerae HE-25]
gi|150424507|gb|EDN16443.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae AM-19226]
gi|395952006|gb|EJH62620.1| cryptochrome DASH [Vibrio cholerae HE-25]
Length = 461
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 38/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 178 P---IEQGWQLPLMDI-------------VTEPNHSAFVGGEQAGLTHCQHYFSSMLPSR 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 222 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 267
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --STYWIFFELLWREYFYWYARRYGA 291
>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|448281497|ref|ZP_21472802.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|445578544|gb|ELY32948.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
Length = 468
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 136/317 (42%), Gaps = 43/317 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR DN SL+ A E+ SV+P + FDP + + P R +F++ES+S
Sbjct: 5 VHWHRRDLRATDNHSLSAAA-ETGSVIPAFIFDP-------AVLEFASPPRVAFMLESLS 56
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR + RG DLVV G P L +A+ GA+ V +R+ S K +E++ A+ D
Sbjct: 57 ELRAWYRERGGDLVVATGDPREELPRIAREHGAERVSWNRDYSGLASKRDEEVREALTDA 116
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GIE + L+ + + GE Y F +K + E + A D + GD
Sbjct: 117 GIEATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVSAPDGEQLASVSGD- 175
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
+PS LG P A G A +RL+ F A+ P
Sbjct: 176 ---SLPSQEALGFDD------------PEATIPDAGMEAARRRLETFCAD----PIYRYA 216
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
D D A+ + +SP L G + R++++ L + + E+ A +
Sbjct: 217 DQRDDP--AADATSGLSPHLKWGTIGIRTVYEALDRAKS-----------EAPDEAAADS 263
Query: 427 WLMFE--LLWRDFFRFI 441
FE L WR F+ +
Sbjct: 264 CEEFESQLAWRAFYAHV 280
>gi|414866985|tpg|DAA45542.1| TPA: hypothetical protein ZEAMMB73_014165 [Zea mays]
Length = 463
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 61/76 (80%)
Query: 253 FWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIP 312
F GSTLYH++DLPF+L ++P+NYGGF+E +KG++IRK +EA +++K +P + +EPGDIP
Sbjct: 376 FTGSTLYHVEDLPFRLDDIPSNYGGFKEAMKGLDIRKVLEAPEEVKCVPMKNVLEPGDIP 435
Query: 313 SLLDLGLSQSAAMSQV 328
+L +L L+ M+Q+
Sbjct: 436 TLAELSLTTPPGMAQM 451
>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
Length = 606
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 139/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN SL A + V VY DP SS G + R FL++S
Sbjct: 36 SSVHWFRKGLRLHDNPSLLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 90
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 91 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 150
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+ +
Sbjct: 151 EAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTSQQMESC 210
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 211 RAEIQDNHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 260
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 261 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 308
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 309 KRNSTPPLS-------LFGQLLWREFF 328
>gi|91224260|ref|ZP_01259523.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
gi|91191171|gb|EAS77437.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
Length = 422
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 130/273 (47%), Gaps = 39/273 (14%)
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G + FL S+S+L ++L G L P+ + G +YA DE
Sbjct: 27 GRAKLQFLDSSLSELNQSLNHLGQRLWAVELTPDQAIKYAVNRFGVTHIYADAFPGSDEQ 86
Query: 234 KSEEK-IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE 292
++ ++ +E A +++K TL + LPF L +PT + FR++V+G++I + E
Sbjct: 87 QALDRAVEGASH---VKIKQQAIRTLLREEQLPFDLSNLPTTFTQFRKQVEGLDISRPHE 143
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
++ L +P ++PS+ AA GGE+ L+ ++
Sbjct: 144 SIRSLPPIPL-----GVNLPSVTAYYFDAKAAF--------------HGGESRGLEHCRQ 184
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A A K ++G + G ++S K SPWLA GC+SP++++ LK+
Sbjct: 185 YFASTLASEYKQTRNG----LDGMDYSTKFSPWLAHGCVSPKTIYAMLKRY--------- 231
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ E+G++ + + W+ FELLWR++F + +++
Sbjct: 232 --EAENGANDS-TYWIYFELLWREYFYWYARRH 261
>gi|403254649|ref|XP_003920073.1| PREDICTED: cryptochrome-2 [Saimiri boliviensis boliviensis]
Length = 593
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + +D
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMDSC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>gi|361125657|gb|EHK97690.1| putative cryptochrome DASH, mitochondrial [Glarea lozoyensis 74030]
Length = 652
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 103/368 (27%), Positives = 156/368 (42%), Gaps = 60/368 (16%)
Query: 127 IVWFRNDLRVHDNESLNT-ANNES---VSVLPVYCFDPRDY--------GKSS------- 167
I R DLRV DN L+ A ++S +LP+Y F + G+++
Sbjct: 12 IYLLRKDLRVSDNPVLHALAKDQSHGFTHLLPLYVFQAQQIEVKGFIPEGEAAKSPFPEA 71
Query: 168 ----SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVL------VELAKAI 217
+GF +TGP+R F+ ESV D++KNLQ GSDL +R G + VL + I
Sbjct: 72 RSQVAGFWRTGPHRVKFVSESVWDMKKNLQQLGSDLCIRAGMADGVLRHVIDEINQKSGI 131
Query: 218 GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG 277
AV+ E +E + E I + + K F Y +DD P + P +
Sbjct: 132 KVGAVWMTAEEGVEEKREERAIRNLCDETDTDFKLFVDEK-YFIDDDP---QDAPNVFTE 187
Query: 278 FREKVKGVEIRKTIEAL------DQLKGLPSRGDVEPGDIP-SLLDLGLSQSAAMSQVWH 330
+R KV+ +R+ A+ D L P V + P ++ D AA+ +
Sbjct: 188 YRNKVE--PLREAPRAVLATPEKDSLPQYPEDSQVPAQESPFTIPDNAEGLLAALMKPLT 245
Query: 331 -----------GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFS 379
G +A+ KGGET A RL+ A A K +++G + G +FS
Sbjct: 246 DPLIKDPPKDPGDVQSAHPFKGGETAAQDRLEHIIASGSASSYKDSRNG----LLGLDFS 301
Query: 380 CKISPWLAMGCLSPRSMFDELKKTATSISAASKWN--DGESGSSGAGSNWLMFELLWRDF 437
K+S +L GC++ R + L KW G G+ + FELLWRD+
Sbjct: 302 TKLSSYLVYGCITSRQIHTALLAFEDGTDDG-KWKGVTGHGKGENPGTKSIRFELLWRDY 360
Query: 438 FRFITKKY 445
R K+
Sbjct: 361 MRLCNMKF 368
>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
Length = 537
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 149/327 (45%), Gaps = 40/327 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
S++WFR LRVHDN +L A+ S + PV+ DP D S G + G R F
Sbjct: 6 GSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ES+ DL +L+ GS L+V G+P VLV + + + + K++
Sbjct: 66 LLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVK 125
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
G+EV TL++ + K G+ P +Y F KV G E +
Sbjct: 126 DYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFL-KVAGEPSCAKSELVMSYSS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN--SMKGGETEALQRLKK----- 352
LP GD+ +LG+S+ ++ ++ + A+ +GGE+EAL+RL K
Sbjct: 185 LPPIGDIG--------NLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDK 236
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A ++ PKG+ S + + +SP+L GCLS R + L+
Sbjct: 237 AWVANFEK--PKGDP-----SAFLKPATTVMSPYLKFGCLSSRYFYQCLQNI-------- 281
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
+ D + +S S L+ +LLWR+FF
Sbjct: 282 -YKDVKKHTSPPVS--LLGQLLWREFF 305
>gi|153828573|ref|ZP_01981240.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
gi|148875968|gb|EDL74103.1| RNA-binding cryptochrome Cry1 [Vibrio cholerae 623-39]
Length = 461
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 38/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQAAQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 178 P---IEQGWQLPLMDIV-------------AEPNHSAFVGGEQAGLTHCQNYFSSMLPSR 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 222 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 267
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --STYWIFFELLWREYFYWYARRYGA 291
>gi|46129334|ref|XP_389028.1| hypothetical protein FG08852.1 [Gibberella zeae PH-1]
gi|97047717|sp|Q4I1Q6.1|CRYD_GIBZE RecName: Full=Putative cryptochrome DASH
Length = 678
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 143/362 (39%), Gaps = 64/362 (17%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRD----------------YGKSS 167
+ R DLR DN L T+++ +LP+Y P KS
Sbjct: 8 VYLLRRDLRATDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYPLAKSQ 67
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-----DA 221
G F + GP RA F E + D++KN + GS +++R+GK + VL L K++ D
Sbjct: 68 VGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDT 127
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--------------LPFK 267
V+ E S +E+ + + + EGI K W Y +D+ +
Sbjct: 128 VWMTEEPSKEELDDQTAVASVCSKEGIGFK-LWHDEKYFIDEKTQEPLRERPRPPLPRPQ 186
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV--EPGDIPSLLDLGLSQSAAM 325
G +P+ + I + ++L P + + +P P
Sbjct: 187 AGSLPSFPSWIPPQQAPFRIPDDYDEFERLLLEPVKAPIISDPPQFPE------------ 234
Query: 326 SQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPW 385
G +A+ KGGET A RL + ++G + G +S K+S +
Sbjct: 235 ------GAKSAHPFKGGETPAWDRLYHLIKSGAMTTYQETRNG----LLGTEYSTKLSAF 284
Query: 386 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
LAMG ++ RS+ EL K + G G+ + FELLWRD+ R T K+
Sbjct: 285 LAMGTITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLWRDYMRLCTFKF 344
Query: 446 SS 447
+
Sbjct: 345 RT 346
>gi|374619112|ref|ZP_09691646.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[gamma proteobacterium HIMB55]
gi|374302339|gb|EHQ56523.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[gamma proteobacterium HIMB55]
Length = 434
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 144/314 (45%), Gaps = 48/314 (15%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFR DLR++DN +L ++ + S+L +Y P+ K G R FL ES+ +L
Sbjct: 6 WFRTDLRLNDNPAL-ASHAAAESLLCLYLM-PKP--KPWCNLTGIGDQRDRFLRESLIEL 61
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
+++LQ G DL+V G PE V+ L + G + +E +S + + I
Sbjct: 62 KRDLQDLGQDLLVLEGSPELVIPHLVERYGITEISVSDHPGWEEKQSLSYLAGKLP---I 118
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
++ G++L+ DLP +L + P + FR K + + +R A ++L PS +
Sbjct: 119 PIQIHRGNSLFTETDLPMELEDFPKVFSPFRRKAEKLNVRGPRAAPERLPPPPS---AQF 175
Query: 309 GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 368
++P +M++ H G P + GG L+RLK+F + ++
Sbjct: 176 DEVP----------PSMNKP-HPGLP----IPGGRRAGLRRLKQFIWDDES---ITEYKQ 217
Query: 369 NHDSIYGANFSCKISPWLAMGCLSPR----SMFDELKKTATSISAASKWNDGESGSSGAG 424
+ + G + S SPWLA G LS R +FD K+ ++ S
Sbjct: 218 TRNCLDGFDGSSTFSPWLANGTLSVREVAHCIFDFEKQRVSNES---------------- 261
Query: 425 SNWLMFELLWRDFF 438
+ WL FELLWR+FF
Sbjct: 262 TYWLFFELLWREFF 275
>gi|384424820|ref|YP_005634178.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio
cholerae LMA3984-4]
gi|327484373|gb|AEA78780.1| Deoxyribodipyrimidine photolyase, single-strand- specific [Vibrio
cholerae LMA3984-4]
Length = 462
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 142/326 (43%), Gaps = 37/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 179 P---IEQGWQLPLMDI-------------VTEPNHSAFVGGEQAGLTHCQNYFSSMLPSR 222
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 223 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAILQRYEAVHGA----ND------ 268
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 269 --STYWIFFELLWREYFYWYARRYGA 292
>gi|429886464|ref|ZP_19368021.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae PS15]
gi|429226656|gb|EKY32741.1| Deoxyribodipyrimidine photolyase, single-strand-specific [Vibrio
cholerae PS15]
Length = 461
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 142/332 (42%), Gaps = 50/332 (15%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR------KTIEALD 295
I + +L LPF L +P+ + FR++V+ + + + + L+
Sbjct: 123 DFSSLHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSAPMGYPRVLPPLE 180
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
Q LP L+D+ +P ++ GGE L + + +
Sbjct: 181 QGWQLP------------LMDIV-------------TEPNHSAFVGGEQAGLTHCQNYFS 215
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 216 SLLPSRYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND 267
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --------STYWIFFELLWREYFYWYARRYGA 291
>gi|351696947|gb|EHA99865.1| Cryptochrome-2 [Heterocephalus glaber]
Length = 593
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 138/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 CSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+ +
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGAVSSQQMKSC 197
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
Length = 581
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 139/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 11 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 65
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 66 LEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 125
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + ++ +
Sbjct: 126 EAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 185
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R D++ +PSL +LG VW +GGETEAL RL K
Sbjct: 186 RADIQESHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 235
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 236 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 283
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 284 KRNSTPPLS-------LFGQLLWREFF 303
>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
Length = 580
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 139/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 11 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 65
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 66 LEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 125
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + ++ +
Sbjct: 126 EAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 185
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R D++ +PSL +LG VW +GGETEAL RL K
Sbjct: 186 RADIQESHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 235
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 236 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 283
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 284 KRNSTPPLS-------LFGQLLWREFF 303
>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
Length = 591
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 139/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN SL A + V VY DP SS G + R FL++S
Sbjct: 21 SSVHWFRKGLRLHDNPSLLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 75
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 76 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 135
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+ +
Sbjct: 136 EAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVVAVTSQQMESC 195
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 196 RAEIQDNHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 245
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 246 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 293
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 294 KRNSTPPLS-------LFGQLLWREFF 313
>gi|77460957|ref|YP_350464.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
Pf0-1]
gi|77384960|gb|ABA76473.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas fluorescens
Pf0-1]
Length = 488
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/329 (26%), Positives = 147/329 (44%), Gaps = 49/329 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR HDN +L A SV VY P+ + + P + F + ++
Sbjct: 10 LIWLRSDLRQHDNTALAAAAERGPSV-AVYLLSPQQWQEHDD-----APCKIDFWLRNLH 63
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L K+L L++R + VL+EL + + +AV+ + E +E + + + A
Sbjct: 64 KLSKSLGDLNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINESRRDAAVAKA 123
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALDQ 296
++ EGI + LD L FK G + T G + + KV + +++ +L Q
Sbjct: 124 LQAEGITFHSY-------LDQLLFKPGSVLTRTGTYFQVFSQFRKVCYEHLHRSMPSLKQ 176
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
G S ++ +P ++ + A++ +W PA GETEA +RL F A+
Sbjct: 177 APGKQSALNIASDPVPEAIEGFPTPGASLRALW----PA------GETEARRRLDTF-AD 225
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K +D + ++S +LA G +SPR + AA + N G
Sbjct: 226 AQIDYYKSERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQSNQG 270
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E S G+ + ELLWR+F++ I Y
Sbjct: 271 EFESGKVGAVTWINELLWREFYKHILVGY 299
>gi|348500170|ref|XP_003437646.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 522
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 140/327 (42%), Gaps = 48/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
I WFR LR+HDN +L A + + PV+ DP K+ G + R FLI +
Sbjct: 4 TCIHWFRKGLRLHDNPALMAALKDCKQLYPVFILDPYLQNKACVGIN-----RWRFLIGA 58
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V GKPE VL +L + + ++ + K+ + K
Sbjct: 59 LKDLDGSLRKLNSRLFVVRGKPEDVLPKLFTKWKVTRLAYEYDTEPYSLQRDSKVTSLAK 118
Query: 245 DEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV Y TLY++D + + G+ P Y + VK + K T++ + +
Sbjct: 119 EHGVEVIYKVSHTLYNIDRIIEENNGKPPLTYTKLQAIVKTIGPPKRPIPAPTMDDMKDV 178
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------K 351
K S + IP+L +LGL + + GGE EAL+RL
Sbjct: 179 KTPSSENHEKEYGIPTLEELGLDTAPL----------GEDLFPGGEQEALRRLDEHMKRT 228
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
K+ ++ N ++ +SP++ GCLS R+ + L T + +
Sbjct: 229 KWVCSFEKPQTSPNSLSPSTTV--------LSPYVTFGCLSVRTFWWRL----TEVYRGN 276
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K +D G +LLWR+FF
Sbjct: 277 KHSDPPVSLHG--------QLLWREFF 295
>gi|348558770|ref|XP_003465189.1| PREDICTED: cryptochrome-2 [Cavia porcellus]
Length = 593
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 138/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 CSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+ +
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGAVSSQQMESC 197
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>gi|422910818|ref|ZP_16945448.1| cryptochrome DASH [Vibrio cholerae HE-09]
gi|341632989|gb|EGS57838.1| cryptochrome DASH [Vibrio cholerae HE-09]
Length = 462
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 37/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQAAQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSSA--PIGYPRVLP 178
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G L+D+ +P ++ GGE L + + +
Sbjct: 179 P---IEQGWQLPLMDIV-------------TEPNHSAFVGGEQAGLTHCQNYFSSMLPSR 222
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 223 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 268
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 269 --STYWIFFELLWREYFYWYARRYGA 292
>gi|229520286|ref|ZP_04409712.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TM 11079-80]
gi|419837545|ref|ZP_14360983.1| cryptochrome DASH [Vibrio cholerae HC-46B1]
gi|421344689|ref|ZP_15795092.1| cryptochrome DASH [Vibrio cholerae HC-43B1]
gi|422307766|ref|ZP_16394921.1| cryptochrome, DASH family protein [Vibrio cholerae CP1035(8)]
gi|423735495|ref|ZP_17708692.1| cryptochrome, DASH family protein [Vibrio cholerae HC-41B1]
gi|424009837|ref|ZP_17752774.1| cryptochrome DASH [Vibrio cholerae HC-44C1]
gi|229342652|gb|EEO07644.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae TM 11079-80]
gi|395940769|gb|EJH51450.1| cryptochrome DASH [Vibrio cholerae HC-43B1]
gi|408618970|gb|EKK92017.1| cryptochrome, DASH family protein [Vibrio cholerae CP1035(8)]
gi|408629871|gb|EKL02530.1| cryptochrome, DASH family protein [Vibrio cholerae HC-41B1]
gi|408856093|gb|EKL95788.1| cryptochrome DASH [Vibrio cholerae HC-46B1]
gi|408863902|gb|EKM03373.1| cryptochrome DASH [Vibrio cholerae HC-44C1]
Length = 461
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 38/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + L
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRVL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVEAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G LLD+ +P ++ GGE L + + +
Sbjct: 178 P---IEQGWQLPLLDI-------------VAEPNHSAFIGGEQAGLTHCQNYFSSLLPSR 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 222 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 267
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --STYWIFFELLWREYFYWYARRYGA 291
>gi|400600754|gb|EJP68422.1| DASH family cryptochrome [Beauveria bassiana ARSEF 2860]
Length = 720
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 152/370 (41%), Gaps = 54/370 (14%)
Query: 124 RASIVWFRNDLRVHDNESLN----TANNESVSVLPVYCFDPRD----------------Y 163
R + R DLR+ DN + T+++ +LPV P
Sbjct: 5 RVLVYLLRRDLRLADNPVFHRLTSTSDHGFTHLLPVVVLPPDQIETSGFLKSDQTSPFPL 64
Query: 164 GKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI----- 217
KS G F + GP+RA F E+V DL+ L + S L++RVG P V+ + + +
Sbjct: 65 AKSRVGKFWRCGPHRAKFFAEAVWDLKNTLSSHQSGLIIRVGPPADVVRAIIQHLQCSGE 124
Query: 218 -GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG--EMPTN 274
AV+ +V +E + ++ I A ++ Y++DD + E+P
Sbjct: 125 AAVAAVWMTDDVPWEEKRQQDDISAVCNSANVDFTLI-PDEKYYIDDRDVDIATQELPDV 183
Query: 275 YGGFR-------EKVKGV--EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAM 325
+ +R EK + V ++ ++ L +P + P IP LD + +
Sbjct: 184 FTTYRKSQEPLREKPRAVYPNMKSSLPPLPPDTLIPPQ--AVPFQIPDDLDT-FQKYLSK 240
Query: 326 SQVWHGGKP--------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN 377
V+ P +A+ GGE A+ RL+ A ++G + G +
Sbjct: 241 PLVFDLPNPPVNPEDAKSAHPFLGGEQSAIDRLQHLVKSGAASSYSDTRNG----LLGVD 296
Query: 378 FSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 437
FS K+S +L +GCL+ R + EL K + G G+ + ELLWRD+
Sbjct: 297 FSTKLSAFLCLGCLTARQIHSELVKLEDGTDEKYQDAPGYGQGENNGTKSIRLELLWRDY 356
Query: 438 FRFITKKYSS 447
R TKK+ +
Sbjct: 357 MRLCTKKFGT 366
>gi|73983386|ref|XP_540761.2| PREDICTED: cryptochrome-2 [Canis lupus familiaris]
Length = 593
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 139/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + ++ +
Sbjct: 138 EAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 197
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R D++ +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RADIQDNHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>gi|452847838|gb|EME49770.1| hypothetical protein DOTSEDRAFT_144060, partial [Dothistroma
septosporum NZE10]
Length = 610
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 153/374 (40%), Gaps = 54/374 (14%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTA---NNES----VSVLPVYCF---------------- 158
++R I R DLR+ DN LN N S VLPVY F
Sbjct: 1 MQRVLIYLLRRDLRLADNPILNEISRLNQHSQRPFTHVLPVYVFPAQQVEVSGFLSPGEE 60
Query: 159 -DPRDYGKSSSG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
P +S++ F + G RA FL ESV DL+ +L+ S L +R+G + V+ +
Sbjct: 61 KSPYPEARSATARFWRCGKLRAKFLAESVFDLQNDLEKFSSGLTIRIGTVKDVVRSILDG 120
Query: 217 IG------ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPFKL 268
A++ E +E E + M E E K W Y +DD LP K
Sbjct: 121 YRQRDDAEVHALWMTGEDGWEEQIEENDVRDLMHSEKKEFK-LWNDEKYFVDDRDLPLKD 179
Query: 269 -GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD-----VEPGDIPSLLD---LGL 319
++ + FR+ V+ + E L ++K LP D +P +IP L GL
Sbjct: 180 PRDLNDVFTAFRKTVEPLRSAPRKE-LPEIKSLPPLPDFIPEQAKPFEIPQTLKDAIAGL 238
Query: 320 SQSAAMSQVWHG------GKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSI 373
S+ G G +A+ GG ++R+ K ++G +
Sbjct: 239 SKPLDKDDEIPGAPSLPVGASSAHPFIGGSKAGVERVNHLLESGSMTAYKDTRNG----L 294
Query: 374 YGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 433
G +FS K+S WLA+GC++ R + + K +G G+ + FELL
Sbjct: 295 LGLDFSTKLSAWLALGCITSRQVHWRMIDFENGKGETGKNANGYGKGENKGTAAVRFELL 354
Query: 434 WRDFFRFITKKYSS 447
WRD+ R T+K+ +
Sbjct: 355 WRDYMRLCTRKFGT 368
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 49/324 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A ES V+ ++CFD + D P R ++L+ +
Sbjct: 6 LFWHRKDLRISDNVGLAKARQESSKVVGIFCFDSNILER-----DDIAPARIAYLLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS+L+ G+P ++ +LA + A+AV+ + +V + +E++ A+K++
Sbjct: 61 ELQQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI+ + +W L++ ++ K GE Y F + + L+ L+GL ++ ++
Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLENLEGL-TQTEL 179
Query: 307 EPG------DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA----E 356
E D+P++ +LG + + GET A +RL F E
Sbjct: 180 EQAKTVKIIDLPTVKELGYRWDYPL------------ILSPGETAAAERLDYFCDAAINE 227
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD-ELKKTATSISAASKWND 415
YQ Q N +I G + ++SP L G + R+++ LK S S +
Sbjct: 228 YQEQ-------RNFPAIEGTS---QLSPALKFGVIGIRTVWQATLKAMENSRSDEVR--- 274
Query: 416 GESGSSGAGSNWLMFELLWRDFFR 439
ES + EL WR+F++
Sbjct: 275 -ESIVTWQK------ELAWREFYQ 291
>gi|344280774|ref|XP_003412157.1| PREDICTED: cryptochrome-2 [Loxodonta africana]
Length = 593
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 137/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L + +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
Length = 542
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 153/345 (44%), Gaps = 54/345 (15%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+SI WFR LR+HDN +L A N + S+ P++ D +S + GP R +FL+ES
Sbjct: 8 SSIHWFRKGLRLHDNRALLEACNGTASLYPLFVLD----SDPASPESRAGPLRTAFLLES 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL + L+A+GS L V GKPE VL +L + + + + ++ + K
Sbjct: 64 LQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAK 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPF----KLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ G++V STL +L + K G YG F K+ A D L
Sbjct: 124 EAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFL-KLHDNAGPVPDCAPDISGDL 182
Query: 301 PSRGDVEPGD-------IPSLLDLGLSQSAAMSQVWHGGKPAANSMK--GGETEALQRLK 351
P+ G P D IPSL DLG+ +P A ++K GGE EAL RL+
Sbjct: 183 PAPG-ASPDDAEYDRFSIPSLSDLGV-------------EPLAKALKFRGGEREALARLE 228
Query: 352 KFAAEY----QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
+ A + + PK + + S + +S +++ GCLS R + L K T
Sbjct: 229 RVMAREDWISKFEKPKTSPNSIEPS------TTVLSMYISHGCLSTRRFWHALCKVYTK- 281
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVV 452
+ GS S L +LLW++F F S K+V
Sbjct: 282 ---------KGGSKPPVS--LKGQLLWKEFNYFSGYSIPSFDKMV 315
>gi|424591481|ref|ZP_18030908.1| cryptochrome DASH [Vibrio cholerae CP1037(10)]
gi|408031556|gb|EKG68172.1| cryptochrome DASH [Vibrio cholerae CP1037(10)]
Length = 461
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/332 (22%), Positives = 138/332 (41%), Gaps = 50/332 (15%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITQFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + +
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA------------ 168
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWH------GGKPAANSMKGGETEALQRLKKFAA 355
P P +L M Q W +P ++ GGE L + + +
Sbjct: 169 ------PMGYPRVL-------PPMYQGWQLPLMDIVTEPNHSAFVGGEQAGLTHCQNYFS 215
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 216 SMLPSRYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND 267
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --------STYWIFFELLWREYFYWYARRYGA 291
>gi|421354490|ref|ZP_15804822.1| cryptochrome DASH [Vibrio cholerae HE-45]
gi|395953615|gb|EJH64228.1| cryptochrome DASH [Vibrio cholerae HE-45]
Length = 461
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 38/326 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + L
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRVL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVEAMAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + + LP
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYPRVLP 177
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+E G LLD+ +P ++ GGE L + + +
Sbjct: 178 P---IEQGWQLPLLDI-------------VAEPNHSAFIGGEQAGLTHCQNYFSSLLPSR 221
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 222 YKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND------ 267
Query: 422 GAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 --STYWIFFELLWREYFYWYARRYGA 291
>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
Length = 566
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 150/370 (40%), Gaps = 78/370 (21%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +I+WFR LRVHDN +L A + +V PV+ DP ++ G R FL+E
Sbjct: 4 KRTILWFRKGLRVHDNPALVKACEGASAVQPVFVLDPWFIKP-----ERVGANRLRFLLE 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++DL +L+ARGS L+V G P V+ +A D + + K + + A
Sbjct: 59 SLTDLDASLRARGSSLLVLHGDPARVIPAALEAWRCDRLCYEFDTEPYAQKRDASVNEAA 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL--GEMPTNYGGFREKVKGVEIRKTI---------- 291
+ G+EV TL+ LD L K GE PT Y F + GV +
Sbjct: 119 RALGVEVHAPVSHTLWDLDRLLAKCPRGEPPTAYASFLKIAHGVGPVPPVAPDVPSITPL 178
Query: 292 ---EALDQLKGLPS--RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEA 346
+AL K L R V IPSL LG A G PA +GGETE
Sbjct: 179 SDGDALSDGKDLVDALRDVVTGSGIPSLERLGYEPIKAGE-----GFPA----RGGETEG 229
Query: 347 LQRLKK------FAAEY---------------------QAQPP-----------KGNKDG 368
L RL+K + AE+ + PP K K
Sbjct: 230 LARLRKMLARTTYIAEFKKPQTNPTELWTPVLGKEGKVKGAPPANPFEAAKKSSKEPKST 289
Query: 369 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 428
+ A + +SP+L GC+SPR+ + EL + + K + G
Sbjct: 290 QLAEAFMAPATTALSPYLKFGCVSPRTFWHEL-RAVLDVELGGKHSKPPESLEG------ 342
Query: 429 MFELLWRDFF 438
+LLWR+F+
Sbjct: 343 --QLLWREFY 350
>gi|398974400|ref|ZP_10685027.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM25]
gi|398141602|gb|EJM30518.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM25]
Length = 488
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 147/329 (44%), Gaps = 49/329 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR HDN +L A +V VY P + + P + F + ++
Sbjct: 10 LIWLRSDLRQHDNTALAAAAERGPTV-AVYLLSPLQWQEHDDA-----PCKIDFWLRNLR 63
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L K+L A L++R + VL+EL + + +AV+ + E +E + +E + A
Sbjct: 64 ELSKSLGALNIPLLIRTAPHWDQAPAVLLELCRQLKIEAVHVNEEYGINESRRDEAVAEA 123
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALDQ 296
++ EGI + LD L FK G + T G + + KV + +++ +L Q
Sbjct: 124 LQAEGITFHSY-------LDQLLFKPGSVLTKTGTYFQVFSQFRKVCYERLHRSMPSLKQ 176
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
G S ++ +P ++ + ++ +W PA GE EA +RL F A+
Sbjct: 177 APGKQSALNIASDPVPEAIEGFPTPGESLRALW----PA------GEAEARRRLDTF-AD 225
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K +D + ++S +LA G +SPR + AA + N G
Sbjct: 226 AQIDYYKSERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQSNQG 270
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E S G+ + ELLWR+F++ I Y
Sbjct: 271 EFESGKVGAVTWINELLWREFYKHILVGY 299
>gi|254516979|ref|ZP_05129037.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
gi|219674484|gb|EED30852.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR5-3]
Length = 438
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 150/317 (47%), Gaps = 48/317 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFRNDLR+HD+ L A + +L VY + PR ++ G R F+ ES+
Sbjct: 7 AIYWFRNDLRLHDHPGL-VAAAAADELLLVYLW-PRQ--RAWCNTQGLGEQRERFICESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS----EEKIEA 241
++L K+LQ G L+V G PE V+ +L + G +A++ + E ++ E+++
Sbjct: 63 TELAKDLQPLGQKLLVLQGSPELVIPDLVRDYGVNAIHTSQCAGSYETRALRVLRERLDI 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + G G++L+ D+ E+ ++ FR KV+ + +E L LP
Sbjct: 123 PVLEHG-------GNSLFQEKDVAALCPELLDSFSPFRRKVE--KQLTAVEPSRNLPQLP 173
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ V+ IP A ++ P ++GG +RLK+F +
Sbjct: 174 APPAVQFHSIPP----------ARTK-----PPLGLPLRGGSHAGQRRLKQFLDSGAIRQ 218
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K ++ D + G S +SPWL++G +S R I+AA ++ E G++
Sbjct: 219 YKETRN-CLDPLEG---SSTLSPWLSLGSISAR-----------EIAAAIAQHEAEQGAN 263
Query: 422 GAGSNWLMFELLWRDFF 438
+ + WL FELLWR++F
Sbjct: 264 ES-TYWLYFELLWREYF 279
>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
Length = 517
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 138/302 (45%), Gaps = 30/302 (9%)
Query: 118 NGAAIRRASIVWFRND-LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
G +I ++ WFR D LR+HDN + A + V+ DP ++G + +
Sbjct: 14 QGQSIPDTTVHWFRLDALRLHDNPAFVDAVKTDGNFKAVFIIDPWFNANYNNGGPQVNVW 73
Query: 177 RASFLIESVSDLRKNLQAR--GSDLVVRVGKPETVLVELAKAIGADAV-YAHREVSHDEV 233
R FL+E++ DL LQ + + L V G+P +L EL K + + +VS + +
Sbjct: 74 R--FLLEALHDLDSRLQKKPYCARLNVLYGQPTMILPELYKKWNVKKITFQASQVSSESM 131
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYH-LDDLPFKLGEMPTNYGGFREKVKGV-----EI 287
K + I+ + + ++ ++ TLY + + G +P +Y FR + + I
Sbjct: 132 KHDGIIKILSEQQNVQAVSYFSHTLYDPANVIALNNGRVPLSYKEFRRLMPLMGKPASPI 191
Query: 288 RKTIEALDQLKGLPSRGDVEP-GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEA 346
+ +K PS EP G IP L DLGLS A+ NS GGETEA
Sbjct: 192 PEPHPMSLCMKAPPSELVPEPEGKIPKLQDLGLSDEFAL---------YTNSWVGGETEA 242
Query: 347 LQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
L RL F + A P ++ ++ +SP++ GCLS R +F +L + A++
Sbjct: 243 LSRLSSFCSRRAAIP--------NEPVHWLMSKDTLSPYIKFGCLSVRQLFSQLLQFAST 294
Query: 407 IS 408
S
Sbjct: 295 SS 296
>gi|28900058|ref|NP_799713.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|308094879|ref|ZP_05892988.2| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
gi|308095330|ref|ZP_05905084.2| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
gi|308125427|ref|ZP_05775230.2| cryptochrome dash [Vibrio parahaemolyticus K5030]
gi|81839701|sp|Q87JP5.1|CRYD_VIBPA RecName: Full=Cryptochrome DASH
gi|28808341|dbj|BAC61546.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|308086793|gb|EFO36488.1| cryptochrome dash [Vibrio parahaemolyticus Peru-466]
gi|308091994|gb|EFO41689.1| cryptochrome dash [Vibrio parahaemolyticus AN-5034]
gi|308115600|gb|EFO53140.1| cryptochrome dash [Vibrio parahaemolyticus K5030]
Length = 445
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 140/328 (42%), Gaps = 46/328 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYC---FDPRDYGKSSSGFDKTGPYRAS 179
++ + WF DLR+HDN L A++ ++ +YC P + + G R
Sbjct: 3 KKIGLYWFTFDLRLHDNSLLVDASSFLDELVCLYCRPSVTPFLHHFAQEV--TLGRARQK 60
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ S+ +L L G L P L + + +Y+ DE + I
Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLSVTHLYSDAMAGSDE----QSI 116
Query: 240 EAAMKDEGIEVKYFWGS--TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
++DE + S +L+ LPF L ++P + FR+ V+G++I I+A +L
Sbjct: 117 LHKLQDEYPHLVIVQHSVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPSRL 176
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+P + +P+L +SA S GGE L +++
Sbjct: 177 PPMP-----KGAQLPTLSSFYFDESALFS--------------GGEWSGLAHCRRYFFSG 217
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
A K ++G + G +S K SPWLA+GC+SPR + LK+ + A ND
Sbjct: 218 LASSYKETRNG----LDGMAYSTKFSPWLALGCVSPRMIHAMLKQYEQTQGA----ND-- 267
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + + Y
Sbjct: 268 ------STYWIYFELLWREYFYWYARCY 289
>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
Length = 589
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 19 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 73
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 74 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 133
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 134 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESC 193
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 194 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 243
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 244 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 291
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 292 KRNSTPPLS-------LFGQLLWREFF 311
>gi|307105009|gb|EFN53260.1| hypothetical protein CHLNCDRAFT_137186 [Chlorella variabilis]
Length = 204
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 101/218 (46%), Gaps = 61/218 (27%)
Query: 233 VKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE 292
VK E +I A G E+ +TL LD LPF L ++P N+ FR++++GV+ R+
Sbjct: 31 VKEERRI--AFAANGSELLLV--NTLCRLDCLPFSLDQLPQNFDKFRQRIEGVQQRR--- 83
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
G +P +GGE EAL++L++
Sbjct: 84 --------------------------------------GRQP-----QGGEGEALRQLQR 100
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
F A A + YG+NFS I+PWLA GCLSPR M ++ ++ + +AA
Sbjct: 101 FVAAASA----------LGAAYGSNFSSNIAPWLATGCLSPRRMLEDARRALAAPTAAGA 150
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
S A +W+ EL WRDFFR +++KYSS +
Sbjct: 151 -TPAASRQLQAPLDWVRCELYWRDFFRLLSRKYSSISR 187
>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
Length = 536
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 160/360 (44%), Gaps = 47/360 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
++++WFR LR+HDN +L A+ S V PV+ DP D S G + G R F
Sbjct: 6 STLMWFRKGLRIHDNPALEYASKGSNFVYPVFVIDPHYMKPDPNAFSPGSTRAGLNRIKF 65
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L+ES++DL +L+ GS L+V G+P VL+ K V + + K++
Sbjct: 66 LLESLADLDLSLKKLGSKLLVLKGEPSQVLISCLKEWDVKRVCFEYDTDPYYQALDVKVK 125
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
GIEV TL++ D+ K G+ P Y F KV G + +
Sbjct: 126 DFASSVGIEVFSPVSHTLFNPADIIQKNGGKPPLTYQSFL-KVAGEPSWASSPLSISISS 184
Query: 300 LPSRGDV---EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------ 350
LP GDV E ++P++ +LG + +GGE+EAL+ L
Sbjct: 185 LPPVGDVGSCEISEVPTVEELGYGDVE---------QDEWTPFRGGESEALKSLRESIKD 235
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
K++ A ++ PKG+ S + + +SP+L GCLS R F L+ ++
Sbjct: 236 KEWIANFEK--PKGDP-----SAFVKPATTVLSPYLKFGCLSSRYFFQCLQDVYRNV--- 285
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFR---FITKKYSSAK--KVVEAVPATACTGALA 465
+ +S S L+ +LLWRDFF F T + K ++ + +P T LA
Sbjct: 286 ------KKHTSPPVS--LVGQLLWRDFFYTVAFGTPNFDQMKDNRICKQIPWNEDTELLA 337
>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
Length = 616
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 142/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K+ +EI T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASTTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|118572252|sp|Q49AN0.2|CRY2_HUMAN RecName: Full=Cryptochrome-2
gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
Length = 593
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>gi|395815587|ref|XP_003781307.1| PREDICTED: cryptochrome-2 [Otolemur garnettii]
Length = 612
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 42 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 96
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 97 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 156
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 157 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 216
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 217 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 266
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 267 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 314
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 315 KRNSTPPLS-------LFGQLLWREFF 334
>gi|398404229|ref|XP_003853581.1| hypothetical protein MYCGRDRAFT_21368, partial [Zymoseptoria
tritici IPO323]
gi|339473463|gb|EGP88557.1| hypothetical protein MYCGRDRAFT_21368 [Zymoseptoria tritici IPO323]
Length = 570
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 154/372 (41%), Gaps = 56/372 (15%)
Query: 124 RASIVWFRNDLRVHDN---ESLNTANNES----VSVLPVYCF-----------------D 159
R I R DLR+ DN L N++S +LP+Y F
Sbjct: 1 RVLIYLLRRDLRLADNPIFTELAHLNSQSQKPFTHLLPLYVFPANQLEISGFLSSDSEKS 60
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGK-PETVLVELAKAI 217
P +S+ GF + G RA F+ ESV DL+++LQ SDL++RVG + V L
Sbjct: 61 PYPEARSAVGGFWRCGKLRAKFMAESVWDLKQDLQKDQSDLILRVGTVKDAVQAVLDGYR 120
Query: 218 GAD-----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLY----HLDDLPFKL 268
G D V+ E S +E E+ ++ ++ +G E + W Y H DLPFK
Sbjct: 121 GRDDAEVHGVWMTGEKSWEEQVEEQDVKKMVEKDGKEFQ-LWNDEKYFLTIHSRDLPFKD 179
Query: 269 G-EMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD-----VEPGDIP-SLLD----- 316
E+ + FR+ V+ + + L K LPS D +P IP SL D
Sbjct: 180 ARELNDVFTSFRKTVEPLR-EAPRQELPLAKKLPSLPDFIPEQAKPFAIPHSLKDTITAL 238
Query: 317 ---LGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSI 373
L Q + G +A+ GG L R+K K ++G +
Sbjct: 239 NKPLDADQQLKNAPTLPEGAESAHPFVGGSKPGLDRIKHLIESGAMTSYKDTRNG----L 294
Query: 374 YGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 433
G +FS K+S WLA+G ++ R + L K G G+ + FELL
Sbjct: 295 LGLDFSTKLSAWLALGSITARQVHWRLVDFEDGKGDVGKNAQGYGKGENKGTAAVRFELL 354
Query: 434 WRDFFRFITKKY 445
WRD+ R T K+
Sbjct: 355 WRDYMRLCTFKF 366
>gi|410973791|ref|XP_003993331.1| PREDICTED: cryptochrome-2, partial [Felis catus]
Length = 582
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 12 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 66
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 67 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 126
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 127 EAGVEVVTENSHTLYDLDRIIDLNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 186
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 187 RAEIQENHDEAYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 236
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 237 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 284
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 285 KRNSTPPLS-------LFGQLLWREFF 304
>gi|344247813|gb|EGW03917.1| Cryptochrome-2 [Cricetulus griseus]
Length = 577
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 139/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 7 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 61
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 62 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 121
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+ +
Sbjct: 122 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGAVTSQQMENC 181
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 182 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 231
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 232 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 279
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 280 KRNSTPPLS-------LFGQLLWREFF 299
>gi|431915736|gb|ELK16069.1| Cryptochrome-2 [Pteropus alecto]
Length = 593
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>gi|262147205|ref|ZP_06028009.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae INDRE 91/1]
gi|379741653|ref|YP_005333622.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|421332956|ref|ZP_15783433.1| cryptochrome DASH [Vibrio cholerae CP1046(19)]
gi|424599301|ref|ZP_18038482.1| cryptochrome DASH [Vibrio Cholerae CP1044(17)]
gi|424602022|ref|ZP_18041164.1| cryptochrome DASH [Vibrio cholerae CP1047(20)]
gi|262031362|gb|EEY49972.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae INDRE 91/1]
gi|378795163|gb|AFC58634.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|395928358|gb|EJH39111.1| cryptochrome DASH [Vibrio cholerae CP1046(19)]
gi|395976009|gb|EJH85473.1| cryptochrome DASH [Vibrio cholerae CP1047(20)]
gi|408042018|gb|EKG78093.1| cryptochrome DASH [Vibrio Cholerae CP1044(17)]
Length = 461
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/331 (22%), Positives = 141/331 (42%), Gaps = 48/331 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDP-----RDYGKSSSGFDKTGPYR 177
++ + WF NDLRV+DN L A+ + ++ +YC+ Y + + + +
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWSEA----K 58
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
FL ++++DL +L G L V P L L + +Y DE ++
Sbjct: 59 KRFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIA 118
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
+I I + +L LPF L +P+ + FR++V+ + + +
Sbjct: 119 RIHQDFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETISLSAPM------ 170
Query: 298 KGLPS-RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
G P +E G L+D+ +P ++ GGE L + + +
Sbjct: 171 -GYPHVLPPIEQGWQLPLMDI-------------VTEPNHSAFVGGEQAGLTHCQNYFSS 216
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 217 LLPSRYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND- 267
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 -------STYWIFFELLWREYFYWYARRYGA 291
>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
Length = 596
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 140/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 26 SSVHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 80
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL ++L+ S L V G+P V L K G + + + + I K
Sbjct: 81 LEDLDRSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 140
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEAL--DQLKGL 300
+ G+EV TLY LD + G+ P Y F+ + +E+ RK + ++ Q++G
Sbjct: 141 EAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGC 200
Query: 301 PS---RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 201 QAEIQESHDETYGVPSLEELGFPTEGLGPAVW----------RGGETEALARLDKHLERK 250
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N S G +SP+L GCLS R + L +
Sbjct: 251 AWVASYER--PRMNASSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYRKV---- 298
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 299 KRNSTPPLS-------LFGQLLWREFF 318
>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKRV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
Length = 616
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 142/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K+ +EI T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMDPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASTTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|380254429|dbj|BAL72539.1| cryptochrome3 [Siganus guttatus]
Length = 507
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 142/324 (43%), Gaps = 43/324 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + +V VY DP G ++ G + R FL+E++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGSANVGIN-----RWRFLLEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I ++
Sbjct: 60 EDLDNSLKKLNSRLFVVKGQPTDVFPRLLKEWKVTRLTFEYDPEPYGKERDGAIIKMAQE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEM-----PTNYGGFREKVKGVEIRK------TIEAL 294
G+E TLY+LD ++ EM P + F+ V+ +E+ + T + +
Sbjct: 120 FGVETIVRNSHTLYNLD----RIIEMNSNNPPLTFKRFQTIVRRLELPRRPLAPITQQQM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
D+ + + + IPSL +LG + VW +GGE+EAL RL K
Sbjct: 176 DKCRTKIADNHDQLYSIPSLEELGFRTEGLPAAVW----------RGGESEALDRLNKHL 225
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ + N S+Y + +SP+L GCLS R ++ L++ +
Sbjct: 226 DKKVWVANLEHPRVNTCSLYAS--PTGLSPYLRFGCLSCRVLYYNLRELYMKLC------ 277
Query: 415 DGESGSSGAGSNWLMFELLWRDFF 438
SS S L +LLWR+FF
Sbjct: 278 ---KHSSPPLS--LFGQLLWREFF 296
>gi|418939862|ref|ZP_13493247.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
gi|375053424|gb|EHS49818.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
Length = 480
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 144/321 (44%), Gaps = 53/321 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFR DLR+ DN +L TA +E V+PVY +P + +G G +A +L S++
Sbjct: 8 ILWFRKDLRLDDNAALATAADEGRRVIPVYIREP-----AEAGTGPLGAAQAWWLHHSLA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++L+ GS L +R G VL +L GA +VY +R + ++ I+A + ++
Sbjct: 63 ALARSLEEIGSRLTLRSGPAGQVLDQLIDETGAASVYWNRRYDPPGIAIDKAIKARLTED 122
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGD 305
G+ ++ F G L+ L G Y F + ++ E R+ A L PS D
Sbjct: 123 GLVIRTFAGQILHEPTRLTTGSGTNFRVYTPFWKALESSGEPREPAPAPASLNAPPSWPD 182
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA----AEYQAQ- 360
EP D +LL + +A S++W + GE AL+RL F A Y++
Sbjct: 183 SEPLDSWALLPTKPNWAAEFSEIW----------QPGEAGALERLDTFIENGLAGYRSLR 232
Query: 361 --PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
P + N + +SP LAMG +SP ++ + A
Sbjct: 233 DFPARPN-------------TSMLSPHLAMGEISPARIWHATRGLAGRF----------- 268
Query: 419 GSSGAGSNWLMF--ELLWRDF 437
A + + F E++WRDF
Sbjct: 269 ----ASEDIIHFRKEVVWRDF 285
>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 isoform 1 [Callithrix jacchus]
Length = 593
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>gi|426368087|ref|XP_004051044.1| PREDICTED: cryptochrome-2 isoform 1 [Gorilla gorilla gorilla]
Length = 614
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 44 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 98
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 159 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 218
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 219 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 268
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 269 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 316
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 317 KRNSTPPLS-------LFGQLLWREFF 336
>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
gi|397473567|ref|XP_003808279.1| PREDICTED: cryptochrome-2 isoform 1 [Pan paniscus]
Length = 614
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 44 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 98
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 159 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 218
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 219 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 268
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 269 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 316
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 317 KRNSTPPLS-------LFGQLLWREFF 336
>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
Length = 594
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 138/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 22 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 76
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 136
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+
Sbjct: 137 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENC 196
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 246
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 247 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYRKV---- 294
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 295 KRNSTPPLS-------LFGQLLWREFF 314
>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
Length = 541
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 133/324 (41%), Gaps = 36/324 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI W R LR+HDN +L A + VY D + S+ G + FL++++
Sbjct: 23 SIHWLRKGLRIHDNPALRDAVLNWGTFRVVYILDTKSVASSNIGLN-----LWRFLLQAL 77
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L + G + + + + I ++
Sbjct: 78 EDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLARE 137
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVE-----IRKTIEALDQLKG 299
G+EV TLYHL + + G P Y F ++G+ + + +L
Sbjct: 138 AGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQELGH 197
Query: 300 LP-SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
P S E +P++ +LGL S +VWHG GETEAL+RL +
Sbjct: 198 TPLSDNHDELYGVPTMEELGLETSKLFVEVWHG----------GETEALKRLDRHLERKA 247
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
G DS+ + +SP+L GCLSPR + L + G
Sbjct: 248 WIASFGKPKVTSDSLMAS--PSGVSPYLRFGCLSPRLFYYRLMDLYRKVKG------GPP 299
Query: 419 GSSGAGSNWLMFELLWRDFFRFIT 442
+S G +LLWR+FF ++
Sbjct: 300 PTSLYG------QLLWREFFFVVS 317
>gi|452989984|gb|EME89739.1| hypothetical protein MYCFIDRAFT_202046 [Pseudocercospora fijiensis
CIRAD86]
Length = 611
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 103/377 (27%), Positives = 160/377 (42%), Gaps = 60/377 (15%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNES-------VSVLPVYCF------------DPRD 162
++R I R DLR+ DN L+ + + VLP++ F PR+
Sbjct: 1 MQRVLIYLLRRDLRLADNPVLHELSRLNGQPQKPFTHVLPMFVFPAEQVEVSGFLKSPRE 60
Query: 163 ---YGKSSS---GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA 216
Y ++ S GF + G RA F ESV D++K+L SDL+VRVG + + + +
Sbjct: 61 KSPYPEARSRVGGFWRCGKRRAKFTAESVWDVKKDLNQLSSDLIVRVGSVKDAVQSILEG 120
Query: 217 I-GADAVYAH-----REVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPFKL 268
G D H E +E EE + + E E K W Y +DD +P K
Sbjct: 121 YRGRDDAEIHGLWMTAEEGWEEKNEEEAVRTLLTKENKEFK-LWTDEKYFVDDRDIPTKD 179
Query: 269 G-EMPTNYGGFREKVKGVEI--RKTIEALDQLKGLPSR--GDVEPGDIPSLLD------- 316
++P + FR+ V+ + RK A L LP P IP+ L+
Sbjct: 180 ARDLPDVFTSFRKTVEPLRDAPRKAHPAPSGLPPLPDHIPEQAAPFAIPNSLEEVIAALH 239
Query: 317 ------LGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNH 370
+G+S + Q G +A+ GG +R++ K ++G
Sbjct: 240 KPLDDSVGISDMPKLPQ----GAESAHPFTGGSKAGHERVQHLIESGSMTSYKDTRNG-- 293
Query: 371 DSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMF 430
+ G +FS K+S WLA+GC+S R + +L + K DG G+ + F
Sbjct: 294 --LLGLDFSTKLSAWLALGCVSARQVHWQLIDFEDGKGSVGKNADGYGKGENIGTAGVRF 351
Query: 431 ELLWRDFFRFITKKYSS 447
ELLWRD+ R T+K+ +
Sbjct: 352 ELLWRDYMRLCTRKFGT 368
>gi|229523842|ref|ZP_04413247.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae bv. albensis VL426]
gi|229337423|gb|EEO02440.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
cholerae bv. albensis VL426]
Length = 461
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/330 (23%), Positives = 142/330 (43%), Gaps = 46/330 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDP-----RDYGKSSSGFDKTGPYR 177
++ + WF NDLRV+DN L A+ + ++ +YC+ Y + + + +
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWSEA----K 58
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
FL ++++DL +L G L V P L L + +Y DE ++
Sbjct: 59 KWFLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAMAGSDERQAIA 118
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
+I I + +L LPF L +P+ + FR++V+ + + +
Sbjct: 119 RIHQDFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETLSLSA---PMGYP 173
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+ LP +E G L+D+ +P ++ GGE L + + +
Sbjct: 174 RVLPP---IEQGWQLPLMDI-------------VTEPNHSAFIGGEQAGLTHCQNYFSSL 217
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 218 LPSRYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND-- 267
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 ------STYWIFFELLWREYFYWYARRYGA 291
>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
Length = 614
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 44 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 98
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 159 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESC 218
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 219 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 268
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 269 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 316
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 317 KRNSTPPLS-------LFGQLLWREFF 336
>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
gi|81867613|sp|Q923I8.1|CRY2_RAT RecName: Full=Cryptochrome-2
gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
Length = 594
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 138/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 22 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 76
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 136
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+
Sbjct: 137 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENC 196
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALVRLDKHLERK 246
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 247 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYRKV---- 294
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 295 KRNSTPPLS-------LFGQLLWREFF 314
>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
Length = 463
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 133/324 (41%), Gaps = 36/324 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI W R LR+HDN +L A + VY D + S+ G + FL++++
Sbjct: 23 SIHWLRKGLRIHDNPALRDAVLNWGTFRVVYILDTKSVASSNIGLN-----LWRFLLQAL 77
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L + G + + + + I ++
Sbjct: 78 EDLDDSLRKLNSRLFVIRGQPADVFPRLFREWGITRLTFEEDSEPFGKERDSAICMLARE 137
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVE-----IRKTIEALDQLKG 299
G+EV TLYHL + + G P Y F ++G+ + + +L
Sbjct: 138 AGVEVASHRSHTLYHLQGIIDRNGGTPPLTYKKFLSVIEGIAPPDPPVPHIDPSAQKLGH 197
Query: 300 LP-SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
P S E +P++ +LGL S +VWHG GETEAL+RL +
Sbjct: 198 TPLSDNHDELYGVPTMEELGLETSKLFVEVWHG----------GETEALKRLDRHLERKA 247
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
G DS+ + +SP+L GCLSPR + L + G
Sbjct: 248 WIASFGKPKVTSDSLMAS--PSGVSPYLRFGCLSPRLFYYRLMDLYRKVKG------GPP 299
Query: 419 GSSGAGSNWLMFELLWRDFFRFIT 442
+S G +LLWR+FF ++
Sbjct: 300 PTSLYG------QLLWREFFFVVS 317
>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2 [Pongo abelii]
Length = 614
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 44 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 98
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 99 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 158
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 159 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 218
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 219 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 268
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 269 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 316
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 317 KRNSTPPLS-------LFGQLLWREFF 336
>gi|408373114|ref|ZP_11170812.1| DASH family cryptochrome [Alcanivorax hongdengensis A-11-3]
gi|407766952|gb|EKF75391.1| DASH family cryptochrome [Alcanivorax hongdengensis A-11-3]
Length = 505
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 138/341 (40%), Gaps = 34/341 (9%)
Query: 112 RPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD 171
R L GA + +++WFR DLRV D L A VL +Y R GFD
Sbjct: 23 RALPAGKGAGV--ITVIWFRQDLRVQDQPLLRRAAALGAPVLTLYVLPERWLAAGEEGFD 80
Query: 172 KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHD 231
+ GP ++ FL+ESV L L A G LV G P ++L V A
Sbjct: 81 RLGPAKSCFLLESVQALADGLNALGLTLVTACGGPASLLAHWQAQAPLQVVTA-----EA 135
Query: 232 EVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK--GVEIRK 289
+ E+ AA++ GI V TL D P + ++ FR +V+ G
Sbjct: 136 DAPEEQAGLAALRRAGIPVHEVASRTLLCGDTRP-GASSLCGSFSRFRRRVEADGGPPVA 194
Query: 290 TIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQR 349
E + + G +L L + W S+ GGE A +
Sbjct: 195 QPEGPPPALAAAAPLPLPAGTESALAPL-----QQRCRHWLRNHRDYFSLPGGEPVARRW 249
Query: 350 LKK--FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
L++ F+ + A + + + + G+ FS ++S LA GCLS R ++ + +
Sbjct: 250 LEQYLFSDRHIA-----HYNATRNQLIGSGFSSRLSAALAWGCLSVRRVWHAILEYERRH 304
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
A+ S WL FELLWR+FF + +++ +A
Sbjct: 305 GASEH------------SYWLRFELLWREFFHWSLREHGTA 333
>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
Length = 586
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 137/328 (41%), Gaps = 47/328 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R S+ WFR LR+HDN +L A + V +Y DP SS G + R FL++
Sbjct: 10 RCSVHWFRRGLRLHDNPALQAAIRDGGPVRCIYILDPWFAASSSVGIN-----RWRFLLQ 64
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ DL +L+ GS L V G+P V L K + + + + I
Sbjct: 65 SLEDLDNSLRKLGSRLFVVRGQPTDVFPRLFKEWRVTRLTFEYDSEPFGKERDAAIVKLA 124
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQ 296
K+ G+EV TLY LD + G P Y F+ + +++ K T + ++
Sbjct: 125 KEAGVEVITENSHTLYDLDRIIELNGHKPPLTYKRFQTIISRMDLPKKPVASITHQQMEM 184
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK---- 352
K E +PSL +LG + VW GGETEAL RL K
Sbjct: 185 CKTEIQDNHDETYGVPSLEELGFPTESLAPAVW----------LGGETEALTRLDKHLER 234
Query: 353 --FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+ A Y+ P+ N + S G +SP+L GCLS R + L + +
Sbjct: 235 KAWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV--- 283
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ S+ S L +LLWR+FF
Sbjct: 284 ------KRNSTPPLS--LYGQLLWREFF 303
>gi|118572251|sp|Q8QG60.2|CRY2_CHICK RecName: Full=Cryptochrome-2
Length = 582
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 140/326 (42%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A + S+ +Y DP S+ G + R FL++S+
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGIN-----RWRFLLQSL 68
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K G + + + + I K+
Sbjct: 69 EDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAKE 128
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLKGLPSR 303
G+EV TLY+LD + + P Y F+ + +E+ +K + ++ + +
Sbjct: 129 AGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188
Query: 304 GDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK------ 352
D++ +PSL +LG VW +GGETEAL RL K
Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVW----------QGGETEALARLDKHLERKA 238
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A Y+ P+ N + S G +SP+L GCLS R + L + + K
Sbjct: 239 WVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV----K 286
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 287 RNSTPPLS-------LYGQLLWREFF 305
>gi|428779785|ref|YP_007171571.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
gi|428694064|gb|AFZ50214.1| deoxyribodipyrimidine photolyase [Dactylococcopsis salina PCC 8305]
Length = 476
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 147/322 (45%), Gaps = 45/322 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A+ ++ VL V+CFDP+ K D+ P R +L+ +
Sbjct: 5 LFWHRRDLRLKDNIGLFQAHQKTAKVLGVFCFDPQLLKK-----DQVAPARIKYLLGCLQ 59
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++N + GSDL++ P T + LA+ + A V+ ++++ K + +++A++++
Sbjct: 60 ELQENYRRVGSDLLILNADPVTAISNLAQTLNATGVFWNQDIEPYSRKRDRAVQSALEEQ 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF---REKVKGVEIRKTIEALDQLKGLPSR 303
GI V+ FW L+ D+ K E Y F +K I++LD L R
Sbjct: 120 GITVQTFWDQLLHSPGDILTKSDEPYKVYTPFWKNWQKQDKATPTGEIKSLDGLTSEEHR 179
Query: 304 GDVEPGDI--PSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA----AEY 357
G I P L DLG S W P + GE+ A RL+ F +Y
Sbjct: 180 KADTVGVIPLPKLNDLGFS--------WENELP----LTPGESAARDRLQWFCDRAILDY 227
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
+++ N+ +I G + +S L G + R +++ AT+ + + +D
Sbjct: 228 -------DQNRNYPAIEGTSI---LSAALKFGAIGIREVWE-----ATNQAEENTRSDEA 272
Query: 418 SGSSGAGSNWLMFELLWRDFFR 439
+ A EL WR+F++
Sbjct: 273 RDNINAWRQ----ELAWREFYQ 290
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 139/321 (43%), Gaps = 49/321 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ W R DLR DN SL+ A E+ SV+P + FDP + + P R +F++ES+
Sbjct: 2 TVHWHRRDLRAADNRSLSAAA-ETGSVIPAFVFDP-------AVLEYASPPRVAFMLESL 53
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
S+LR + RGSDLVV G P L +A+ A++V +R+ S K +E + A+ D
Sbjct: 54 SELRAWYRERGSDLVVATGDPRDELPRIAREHDAESVSWNRDYSGLASKRDEAVREALTD 113
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLKGL 300
G+E + L+ + + GE Y F +K + E + E L + G
Sbjct: 114 AGLEATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVPAPNGEQLASVSGD 173
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
P +PS LG + P AN G A +RL+ F A+
Sbjct: 174 P---------LPSQEALGFDE------------PEANIPDTGMEAARRRLETFCAD---- 208
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
P D D A+ + +SP L G + R++++ +++ + + + E
Sbjct: 209 PIYRYADQRDDP--AADATSGLSPHLKWGTIGIRTVYEAVERAKSEAPDDATADSCEEFE 266
Query: 421 SGAGSNWLMFELLWRDFFRFI 441
S +L WR F+ +
Sbjct: 267 S---------QLAWRAFYAHV 278
>gi|372269942|ref|ZP_09505990.1| DASH family cryptochrome [Marinobacterium stanieri S30]
Length = 440
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 130/319 (40%), Gaps = 34/319 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WF D+R+ DN +L A + +L VY D R + + G R FL E ++
Sbjct: 5 LFWFTQDIRLDDNPALQQAARQCDQLLLVYVHDSRLERAGNFNAARMGRARRDFLFEGLA 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL + L A G L++ G P VL EL D ++ R E + +++
Sbjct: 65 DLGQQLDACGQQLLMFTGDPIEVLSELVSRYRIDRLFCTRSSGVYEQRQLSSLQSRFPHL 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
++ G TL+ L + P ++ FR +V+ +ALD + L D+
Sbjct: 125 NASIRD--GYTLFDQSQLTEIVDPFPVSFSAFRRRVE--------KALDIPEPLSPVLDL 174
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
P LS SA G GGE A L+++ + + P K
Sbjct: 175 PPALKIEARGEQLSTSA--------GYHNDTWFAGGEQAAQSHLERY---FSSLLPSTYK 223
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
++ + G + SPWLA G LSPR + +LK+ A +
Sbjct: 224 QVRNE-LDGLENGTRFSPWLAQGSLSPRRIMQQLKQYEARQGA------------NESTY 270
Query: 427 WLMFELLWRDFFRFITKKY 445
W+ FELLWR++F++ +
Sbjct: 271 WIFFELLWREYFQWYAHHH 289
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 48/324 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I W R DLR++DN L A V+ V+C DP + D P R +L+ +
Sbjct: 3 IFWHRRDLRINDNIGLAKAYTRDKKVIGVFCLDPNILNR-----DDIAPARVKYLLGCLE 57
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ Q GSDL++ PE ++ LA+ + ADAVY + +V ++ + A+K++
Sbjct: 58 ALKTKYQKLGSDLLIFHNTPEEIIPSLAEKLKADAVYWNLDVEPFSRHRDKNVSQALKEK 117
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
IE + FW L+ ++ K + T Y F + +++ QL GL D
Sbjct: 118 SIETQTFWDQLLHSPGEILSKSNQTAYTVYTPFWRNWEAQPKSSPVDSPQQLTGL---ND 174
Query: 306 VEPG--------DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+E +IPSL DLG W P + GE AL+RL+ F
Sbjct: 175 LEKTIVKELGTINIPSLNDLGFP--------WDADLP----LSPGEESALERLEYFC--- 219
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
Q+ D N+ + G + ++S L G +S R+++ KK+ ++ +
Sbjct: 220 QSLIYNYECDRNYPFLDGTS---QLSAALKFGAISVRTIW---KKSQAELTNCN------ 267
Query: 418 SGSSGAGSNWLMF--ELLWRDFFR 439
S A N + + E+ WR+F++
Sbjct: 268 --SDEARENIIAWQKEIAWREFYQ 289
>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 540
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 144/337 (42%), Gaps = 51/337 (15%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
+G A+ SI WFR LR+HDN +L A + V PV+ DP + K + G R
Sbjct: 2 SGGAV---SIHWFRKGLRLHDNAALLAALKGAKQVYPVFVLDPH-FAKP----EFVGVVR 53
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS-HDEVKSE 236
+FL+ES+ DL K+L+ GS L V GKP L E K + R+ + +++
Sbjct: 54 YNFLLESLRDLDKSLRTLGSRLYVLKGKPLQALEEKFKEWEVTRLTFERDTEPYAKLRDT 113
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLG---EMPTNYGGFRE------KVKGVEI 287
+ E A K GIEV G TL+ + K G ++P Y F KV
Sbjct: 114 QARELAEK-HGIEVITTVGHTLHDPEQYIAKAGGADKIPLTYSSFGTLFRRLGKVPAALS 172
Query: 288 RKTIEALDQLKGLPSRG--DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETE 345
T E Q L D D+PSL D+G + +V GGETE
Sbjct: 173 APTKEDFPQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEV---------RFPGGETE 223
Query: 346 ALQRLKKF----AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 401
AL+R+++ A + PK + + S G +SP+L GCLSPR + EL
Sbjct: 224 ALERMRRHLQRKAWIAHFEKPKTSPNTLEPSTTG------LSPYLKFGCLSPRLFYHELA 277
Query: 402 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ +K G +LLWR+FF
Sbjct: 278 RVYAEYRDHAKPPVSLHG-----------QLLWREFF 303
>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
Length = 584
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 138/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 14 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 68
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 69 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 128
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K A+ +
Sbjct: 129 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESC 188
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 189 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 238
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 239 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 286
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 287 KRNSTPPLS-------LFGQLLWREFF 306
>gi|440907719|gb|ELR57829.1| Cryptochrome-1 [Bos grunniens mutus]
Length = 589
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 146/323 (45%), Gaps = 47/323 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S V+ ++CFD ++ P R ++LI +
Sbjct: 6 LFWHRKDLRISDNIGLAKARQKSSKVVGIFCFDSNILEQND-----IAPVRIAYLIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS+L+ G+P ++ +LA + A+AV+ + +V + +E++ A+K++
Sbjct: 61 ELQQTYQKLGSNLLFIQGEPSHIIPQLAAVLDAEAVFWNLDVEPYSQRRDEQVIQALKEQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR--- 303
GI+ + +W L++ ++ K GE Y F + + L+ L+GL
Sbjct: 121 GIKTQTYWDQLLHYPGEIVTKSGEPYKVYTPFWKNWELQSKDSITNNLESLEGLTQTELQ 180
Query: 304 --GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA----AEY 357
+V D+P++ +LG + + GET A +RL F EY
Sbjct: 181 QAKNVNIIDLPTVQELGYRWDYPL------------ILSPGETAAAERLDYFCDAAINEY 228
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD-ELKKTATSISAASKWNDG 416
Q Q N +I G + ++SP L G + R+++ LK S S +
Sbjct: 229 QEQ-------RNFPAIEG---TSQLSPALKFGVIGIRTVWQATLKAMENSRSDEVR---- 274
Query: 417 ESGSSGAGSNWLMFELLWRDFFR 439
ES + EL WR+F++
Sbjct: 275 ESIVTWQK------ELAWREFYQ 291
>gi|380797951|gb|AFE70851.1| cryptochrome-2 isoform 1, partial [Macaca mulatta]
Length = 579
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 9 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 64 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 123
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY L+ + G+ P Y F+ + +E+ K T + ++
Sbjct: 124 EAGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 183
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 184 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 233
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 234 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 281
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 282 KRNSTPPLS-------LFGQLLWREFF 301
>gi|81864807|sp|Q70AD6.1|CRY1_SPAJD RecName: Full=Cryptochrome-1
gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
Length = 587
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 145/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L+V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-- 352
++ S E +PSL +LG S VW GGETEAL RL++
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 353 ----FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERRAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
Length = 472
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 137/313 (43%), Gaps = 42/313 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR DLR+ D+E+L A + V+PV+ +D + G L SV+
Sbjct: 7 LMWFRRDLRLGDHEALTAACDADRPVIPVFIYDELT--------ESMGAAPKMRLGLSVA 58
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL +L +GS L++R GK VL EL K GAD VY R D + ++AA+KD+
Sbjct: 59 DLAASLNEKGSKLILRRGKALDVLRELIKDTGADTVYWSRLYDPDGKTRDTDVKAALKDD 118
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI + F G L F+ + T GGF + + K++ D LP+ G +
Sbjct: 119 GITAESFKGHVL-------FEPWTVETKIGGFYKVY--TPMWKSVRGNDVPAALPTPGTI 169
Query: 307 E-PGDIPSLLDLGLSQ-SAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
P P D+ Q AAM + G + GE A RL F A + A K
Sbjct: 170 PVPDSWPKSDDIADWQMDAAMHR---GADTLKSHCTVGEAAASHRLGAFIANHVANYVK- 225
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
N+D + + + +S L G +SPR + S NDG+ +
Sbjct: 226 NRD-----LPAVDGTSGLSENLTYGEISPRKCWH---------SGWQALNDGKGDAET-- 269
Query: 425 SNWLMFELLWRDF 437
+ EL+WR+F
Sbjct: 270 ---FLKELVWREF 279
>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
Length = 582
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 139/326 (42%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A + S+ +Y DP S+ G + R FL++S+
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGIN-----RWRFLLQSL 68
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K G + + + + I K+
Sbjct: 69 EDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKE 128
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLKGLPSR 303
G+EV TLY LD + + P Y F+ + +E+ +K + ++ + +
Sbjct: 129 AGVEVVIENSHTLYDLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188
Query: 304 GDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK------ 352
D++ +PSL +LG VW +GGETEAL RL K
Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVW----------QGGETEALARLDKHLERKA 238
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A Y+ P+ N + S G +SP+L GCLS R + L + + K
Sbjct: 239 WVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV----K 286
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 287 RNSTPPLS-------LYGQLLWREFF 305
>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
gi|81882058|sp|Q9R194.1|CRY2_MOUSE RecName: Full=Cryptochrome-2
gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
Length = 592
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 138/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 22 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 76
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 136
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K A+ +
Sbjct: 137 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESC 196
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 246
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 247 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 294
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 295 KRNSTPPLS-------LFGQLLWREFF 314
>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
Length = 570
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 141/327 (43%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + SV VY DP + SSSG G R FL++S
Sbjct: 8 SSVHWFRKGLRLHDNPALLAALRGANSVRCVYILDPW-FAASSSG----GVNRWRFLLQS 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V +L K G + + + + I K
Sbjct: 63 LEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAK 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G P Y F+ + +E+ + T + ++
Sbjct: 123 EAGVEVIVENSHTLYDLDRVIELNGHSPPLTYKRFQAIISRMELPRRPAPSVTRQQMEAC 182
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------K 351
+ R E +PSL +LG +W GGETEAL RL K
Sbjct: 183 RAEIKRNHDETYGVPSLEELGFHSENKGHAIW----------PGGETEALARLDRHLERK 232
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ + + S G +SP+L GCLS R + L++ +
Sbjct: 233 AWVANYER--PRMSANSLLASPTG------LSPYLRFGCLSCRLFYYRLQELYQKV---- 280
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 281 KKNSPPPLS-------LYGQLLWREFF 300
>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
gi|402893708|ref|XP_003910033.1| PREDICTED: cryptochrome-2 [Papio anubis]
gi|355566579|gb|EHH22958.1| Cryptochrome-2 [Macaca mulatta]
gi|355752191|gb|EHH56311.1| Cryptochrome-2 [Macaca fascicularis]
Length = 593
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY L+ + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLERIIELNGQKPPLTYKRFQAIISRMELPKKPVGSVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>gi|75048080|sp|Q8WP19.1|CRY1_MACFA RecName: Full=Cryptochrome-1
gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
Length = 586
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKRNSSPPLS-------LYGQLLWREFF 296
>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
gi|82104700|sp|Q8QG61.1|CRY1_CHICK RecName: Full=Cryptochrome-1
gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
Length = 621
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 141/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWSIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 QKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 144/317 (45%), Gaps = 38/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILER-----DDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPTTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
D E ++P+L +LG + W P + GE A RL++F Q
Sbjct: 179 DKLTETINLPTLENLGFT--------WQNPLP----LTPGEKAAHSRLEEFC---QGVIN 223
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+D N + G + ++S L G + R+++ + + A +
Sbjct: 224 NYQEDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAEE--------AKN 272
Query: 423 AGSNWLMFELLWRDFFR 439
+ W EL WR+F++
Sbjct: 273 SIITWQQ-ELAWREFYQ 288
>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2 isoform 1 [Sus scrofa]
Length = 594
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 24 SSVHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 78
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L + G + + + + I K
Sbjct: 79 LEDLDTSLRKLNSRLFVVRGQPADVFPALFQEWGVTRLTFEYDSEPFGKERDAAIMKMAK 138
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 139 EAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQALISRMELPKKPVGSVTSQQMESC 198
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 199 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 248
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 249 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 296
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 297 KRNSTPPLS-------LFGQLLWREFF 316
>gi|149375532|ref|ZP_01893302.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
gi|149360237|gb|EDM48691.1| Deoxyribodipyrimidine photolyase [Marinobacter algicola DG893]
Length = 440
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 138/329 (41%), Gaps = 40/329 (12%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
S+ WF DLR+HDN +L A ++S +L VY DPR + G +R FL +S
Sbjct: 2 VSLYWFTRDLRLHDNAAL-LAASKSDMLLCVYVVDPRWFVPGPFQCRALGAHRWRFLWQS 60
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L ++L+ G L + GKPE V+ +L + V R E + + +
Sbjct: 61 LISLERDLRPLGQRLHIAFGKPEQVIPDLVHDHNINRVIRSRLPGTREAVQWKSLRDKLP 120
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT----IEALDQLKGL 300
+ F +L+ LP L +P + FR++V+ R + I L L
Sbjct: 121 QTVFQQ--FETLSLFTEGSLPMDLSHLPDTFSQFRKQVEKTGNRNSERLRIRTLTALPPA 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
P G+ P++ + P +GGE+ L+RL +
Sbjct: 179 PGYPQDNRGECPAIAE--------------PRHPIG--FRGGESAGLERLNDYLF---VN 219
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
+ +++ A+ S ++SPWLA G LS R + D + +D E+
Sbjct: 220 HRIAHYKETRNALDEADASSRLSPWLANGALSAREVADTI-------------SDYENQH 266
Query: 421 -SGAGSNWLMFELLWRDFFRFITKKYSSA 448
+ WL FELLWR++F + K+ ++
Sbjct: 267 VKNESTYWLWFELLWREYFYWYALKHGAS 295
>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 480
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 142/334 (42%), Gaps = 54/334 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP D P R S++I S++
Sbjct: 7 LFWHRRDLRIRDNLGLAAARKRTPKVVGVFCLDP-----GILNGDDIAPARVSYMIGSLA 61
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++N Q+ GS+L++ GKPE + LA A+GA AVY +R+V + + + +A+KD
Sbjct: 62 ELQENYQSAGSELLILKGKPEEAIPNLASALGAAAVYWNRDVEPYARERDPNVASALKDR 121
Query: 247 GIEVK-YFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR-- 303
IE +W L D L GE Y F K E + GL
Sbjct: 122 DIESSTQYWDQLLLPPDALKTGAGEPYKVYTPFWRKWIRQEKQPPASTFAAATGLSPHEK 181
Query: 304 ------GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA--- 354
G++ D+P+ LG + ++ GE AL +L+KF
Sbjct: 182 SLANKAGNI---DLPTAKALGYEWENEL------------LLQPGEAAALAQLEKFCDDR 226
Query: 355 ---AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
AEY Q ++ SI G + +S L G L R++++ +A+
Sbjct: 227 RVIAEYDQQ-------RDYPSIAG---TSTLSAALKFGTLGIRTVWE---------AASD 267
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
++ S + EL WR+F++ + +
Sbjct: 268 AYSRARSEETHRNIRTWQQELAWREFYQSVMYTF 301
>gi|431905253|gb|ELK10298.1| Cryptochrome-1 [Pteropus alecto]
Length = 513
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 138/317 (43%), Gaps = 50/317 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNI----AKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI- 407
K + A ++ P+ N + S G +SP+L GCLS R + +L I
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKLTDLYKKIP 277
Query: 408 -----SAASKWNDGESG 419
A +KW +G +G
Sbjct: 278 WDKNPEALAKWAEGRTG 294
>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
Length = 589
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALREVIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
gi|402887532|ref|XP_003907145.1| PREDICTED: cryptochrome-1 [Papio anubis]
gi|355564646|gb|EHH21146.1| hypothetical protein EGK_04148 [Macaca mulatta]
gi|355786488|gb|EHH66671.1| hypothetical protein EGM_03711 [Macaca fascicularis]
gi|380809804|gb|AFE76777.1| cryptochrome-1 [Macaca mulatta]
gi|383415927|gb|AFH31177.1| cryptochrome-1 [Macaca mulatta]
gi|384945408|gb|AFI36309.1| cryptochrome-1 [Macaca mulatta]
Length = 586
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
gi|74735764|sp|Q16526.1|CRY1_HUMAN RecName: Full=Cryptochrome-1
gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
Length = 586
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
Length = 586
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
gi|397525251|ref|XP_003832588.1| PREDICTED: cryptochrome-1 [Pan paniscus]
gi|410216796|gb|JAA05617.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410256668|gb|JAA16301.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410295158|gb|JAA26179.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410354849|gb|JAA44028.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
Length = 586
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
Length = 625
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 150/349 (42%), Gaps = 65/349 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDK-----TGPYRAS- 179
+I WFR LR+HDN SL + + SV VY DP G S+ G ++ P S
Sbjct: 5 TIHWFRKGLRLHDNPSLKDSLLGADSVRCVYILDPWFAGSSNVGINRWRICLRSPLTVSQ 64
Query: 180 ------FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
FL++S+ DL +L+ S L V G+P V L KA AVY +E + +
Sbjct: 65 EQEALRFLLQSLEDLDSSLRKLNSRLFVIRGQPTDVFPRLFKAHPTVAVYVPQEWNISRL 124
Query: 234 KSE-------EKIEAAMK----DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR-- 279
E ++ +AA+K + G+EV TLY LD + G+ P Y F+
Sbjct: 125 SYEYDSEPFGKERDAAIKKLASEAGVEVTVCISHTLYDLDKIIELNGGQSPLTYKRFQTL 184
Query: 280 -EKVKGVEI---RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPA 335
++ VE+ T E + + S + +PSL +LG S VW
Sbjct: 185 ISRMDPVEVPAESITAEIMGKCTTPLSDDHDDKYGVPSLEELGFDTEVLSSAVW------ 238
Query: 336 ANSMKGGETEALQRL------KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMG 389
GGETEAL RL K + A ++ P+ N + S G +SP+L G
Sbjct: 239 ----PGGETEALTRLERHLERKAWVANFER--PRMNANSLLASPTG------LSPYLRFG 286
Query: 390 CLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
CLS R + +L T + K N S L +LLWR+FF
Sbjct: 287 CLSCRLFYFKL----TDLYRKVKKNSSPPLS-------LYGQLLWREFF 324
>gi|403275987|ref|XP_003929699.1| PREDICTED: cryptochrome-1 [Saimiri boliviensis boliviensis]
Length = 586
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
Length = 587
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIIRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|42523667|ref|NP_969047.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
gi|39575874|emb|CAE80040.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus HD100]
Length = 435
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + ++ WFR DLR+ DN L A E +VLP++ FD + D R +F+
Sbjct: 1 MSKVTLFWFRRDLRLDDNAGLYHALKERSAVLPLFIFD----SEILENLDDPADARVTFI 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
E + D+++ L A+ SDL+VR GKP VL L+ + +A+YA+ + K +EK+ A
Sbjct: 57 YEQIQDMKQQLNAKKSDLIVRHGKPLEVLKTLSDEMAVEAIYANHDYEPAARKRDEKVAA 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV 282
GIE F L+ D++ + T Y +R KV
Sbjct: 117 WAAKAGIEFLTFKDQCLFEKDEILTDARKPYTVYTPYRNKV 157
>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1 [Sus scrofa]
Length = 588
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|417403044|gb|JAA48347.1| Putative deoxyribodipyrimidine photolyase/cryptochrome [Desmodus
rotundus]
Length = 587
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|432959668|ref|XP_004086356.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 653
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 138/326 (42%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + +V VY DP G S+ G + R FL++ +
Sbjct: 5 SIHWFRKGLRLHDNPALREAVRGAGTVRCVYFLDPWFAGSSNVGVN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKT-IEAL-DQLKGLP- 301
G+EV TLY LD + G+ P Y F+ + ++ + +E L D L G
Sbjct: 120 AGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLISRLDPPEMPVETLSDTLMGCCV 179
Query: 302 ---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S E +PSL +LG S VW GGETEAL R+ K
Sbjct: 180 TPVSEDHGEKYGVPSLEELGFDTEGLPSAVW----------PGGETEALTRIERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 278 KNSSPPLS-------LYGQLLWREFF 296
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 146/317 (46%), Gaps = 38/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A + S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARDRSPKIIGVFCLDPAILER-----DDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIICGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPKTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ E ++P+L +LG + W P A GE A RL++F Q
Sbjct: 179 EKLAETINLPTLENLGFT--------WQNPLPLA----PGEKAARSRLEEFC---QGVIN 223
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+D N + G + ++S L G + R+++ + + A +
Sbjct: 224 NYQEDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAEE--------AKD 272
Query: 423 AGSNWLMFELLWRDFFR 439
+ W EL WR+F++
Sbjct: 273 SIITWQQ-ELAWREFYQ 288
>gi|152989300|ref|YP_001350641.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
gi|150964458|gb|ABR86483.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PA7]
Length = 477
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 149/342 (43%), Gaps = 62/342 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 2 NLVWFRCDLRTSDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 55
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+L++ L A L+VR + TVL L +G AV+ ++E +E + ++ +
Sbjct: 56 SELQRQLAALNIPLLVRDCEHWRQAPTVLGRLCSELGIGAVHVNQEYGANEQRRDQAVAR 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALD 295
++++G+ HLD L F G + T GG+ + +V + + + A+
Sbjct: 116 HLREQGVAFHE-------HLDQLFFAPGSVLTRGGGYFQVFSQFRRVCHERLYQALPAVQ 168
Query: 296 QLKGLPSRGDVEPGD-IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ PGD +P + + A + +W PA GET A QRL+ FA
Sbjct: 169 PRPQPQPPHRLLPGDPLPDAVPGFAAPGAGLRALW----PA------GETAAQQRLRDFA 218
Query: 355 AEYQAQPPKGNKDGNHDSIYGANF-----SCKISPWLAMGCLSPRSMFDELKKTATSISA 409
++ D H+ +F + ++SP+LA G LSPR D A
Sbjct: 219 EQH--------LDDYHEQ---RDFPALPGTSQLSPYLAAGVLSPRQCLD----------A 257
Query: 410 ASKWNDGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
A N GE SG + W+ ELLWR+F++ I Y +
Sbjct: 258 ALVANRGEFSGGRQGAATWIN-ELLWREFYKHILVGYPRVSR 298
>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
Length = 621
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALREVIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYELDKIIELNGGQPPLTYKRFQTLISRMEPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 SKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
Length = 587
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|414342179|ref|YP_006983700.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
gi|411027514|gb|AFW00769.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
Length = 502
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 148/360 (41%), Gaps = 50/360 (13%)
Query: 81 SASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNE 140
+A TLSPS S + +SA Q+ S P+ IVWFR DLR D+
Sbjct: 4 TACQTLSPSYHSNEDQMSAQGHQTSAS-----PV------------IVWFREDLRFSDHP 46
Query: 141 SLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLV 200
+L A ++ VY D + G +L ++SDLR L L+
Sbjct: 47 ALQAATATGHPLICVYVLD-----DETPALHALGGASRWWLHGALSDLRSTLSRHHGTLL 101
Query: 201 VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYH 260
G E ++ +LAK A VY H + E + +E+I +A+ +G+ + WG+ L
Sbjct: 102 TLKGSAEKLIPQLAKETDAQGVYWHHRLHQKEREQDEQIASALDKQGVSSEASWGTVLLD 161
Query: 261 LDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLS 320
+ K G + F + + ++ ++ L P P D+ S L +
Sbjct: 162 PTQVQTKEGRFYQVFTAFWKAFQSQDVPVPLDPPAHLSFHPL-----PDDLLSKYRLDET 216
Query: 321 QSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSC 380
W G A + + GE EA + L+ F A+ KG + G +
Sbjct: 217 TLLPTHPDWAAGLRA--TWEPGEREAHEHLEDFLRHDCARYGKGRDE------MGREGTS 268
Query: 381 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
++SP+LA G +SPR +++ ++K G+ G+ + E+ WR+F ++
Sbjct: 269 RLSPYLASGAISPRQVWEAIQK---------------KGAHDEGARIFLSEIGWREFAKY 313
>gi|432094365|gb|ELK25942.1| Cryptochrome-1 [Myotis davidii]
Length = 535
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIRGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDSNLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVQISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
Length = 587
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
Length = 587
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNI----AKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|296487421|tpg|DAA29534.1| TPA: cryptochrome 1 (photolyase-like) [Bos taurus]
Length = 543
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|443316924|ref|ZP_21046350.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
gi|442783454|gb|ELR93368.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 6406]
Length = 478
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 142/323 (43%), Gaps = 40/323 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+HDN L A S V V+C DP + D P R ++L+ ++
Sbjct: 6 LFWHRRDLRLHDNLGLAAARARSPQVTGVFCLDPGILHR-----DDVAPVRVAYLMNCLA 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ A G +L++ G P VL LA+ I A+Y +R+V + + AA K++
Sbjct: 61 ALQGRYAAAGGELLILQGSPAQVLPNLAQVIAVTALYWNRDVEPYARDRDTHVAAACKEQ 120
Query: 247 GIEVK-YFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPSRG 304
GIE+K FW L + G T YG F R + +E + +GL S
Sbjct: 121 GIEIKTTFWDQLLCAPGAVLTGTGSPYTVYGPFWRNWCTQAKAPPELEPTN-FEGL-SPA 178
Query: 305 DVEPGD------IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
+ E + +PS DLG S W P ++ GE ALQ+L+ F ++ Q
Sbjct: 179 ERERANAAGAMPLPSTTDLGFS--------WDQPLP----VEPGEGAALQQLEAFCSQDQ 226
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
A G D + + S ++S L G + R+++ A + A + E+
Sbjct: 227 A---IGAYDEQRNFPFALGTS-RLSAALKFGVIGIRTVW------AAAAEAMERCRSDET 276
Query: 419 GSSGAGSNWLMFELLWRDFFRFI 441
S + W EL WR+F++ +
Sbjct: 277 RQS--VTTWQQ-ELAWREFYQHV 296
>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
Length = 569
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 136/325 (41%), Gaps = 47/325 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN +L A + V VY DP SS G + R FL++S+
Sbjct: 1 VHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQSLE 55
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL +L+ S L V G+P V L K G + + + + I K+
Sbjct: 56 DLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEA 115
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPSRG 304
G+EV TLY LD + G+ P Y F+ + +E+ +K A+ + R
Sbjct: 116 GVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSSRMESCRA 175
Query: 305 DVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK------F 353
+++ +PSL +LG VW +GGETEAL RL K +
Sbjct: 176 EIQKNHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERKAW 225
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
A Y+ P+ N + S G +SP+L GCLS R + L + K
Sbjct: 226 VANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KR 273
Query: 414 NDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 274 NSTPPLS-------LFGQLLWREFF 291
>gi|357032216|ref|ZP_09094156.1| deoxyribodipyrimidine photolyase [Gluconobacter morbifer G707]
gi|356414443|gb|EHH68090.1| deoxyribodipyrimidine photolyase [Gluconobacter morbifer G707]
Length = 481
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 144/330 (43%), Gaps = 41/330 (12%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
+++ R IV FR+DLR+ D+ +L+ A VL VY D +S G
Sbjct: 5 SSLSRPVIVCFRDDLRMADHPALHEAAASGAPVLCVYVLD-----DETSDLPPPGAASRW 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
+L +++DLR L+ RG L+ G E +L LA+ A +Y H + E + +E++
Sbjct: 60 WLHGTLADLRGALEKRGGTLLTLGGPLEKILPRLAEETNARCIYWHHRLHEKERQQDERL 119
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
+ +G+EV+ WGS L + + K G Y F + ++G + E LD
Sbjct: 120 IRTLNHKGVEVRAQWGSVLLDPERIRTKEGGFYRVYTSFWKALQGQAV---PEPLD---- 172
Query: 300 LPSRGDVEPGDI-PSLLDLGLSQSAAM---SQVWHGGKPAANSMKGGETEALQRLKKFAA 355
LPS D + PSL+ AA+ W GG ++ + GE EA + L F
Sbjct: 173 LPS--DFPFFRVAPSLMKTDRLDEAALLPRHPDWAGG--LRSTWEPGEREAHEHLTDFLH 228
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ + G + + ++SP+LA G +SPR ++ +
Sbjct: 229 H------EVDHYGRGRDLMAEEGTSRLSPYLASGAISPRQVWATV--------------- 267
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE G +G + E+ WR+F R+ +
Sbjct: 268 GEHGLNGEDARIFRSEIGWREFARYTLYHF 297
>gi|82091801|sp|Q6ZZY0.1|CRY1_SYLBO RecName: Full=Cryptochrome-1
gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
Length = 620
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 141/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWNIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|73969270|ref|XP_862753.1| PREDICTED: cryptochrome-1 isoform 2 [Canis lupus familiaris]
Length = 587
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVV 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|426374041|ref|XP_004053891.1| PREDICTED: cryptochrome-1 [Gorilla gorilla gorilla]
Length = 583
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 141/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLETPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|348553110|ref|XP_003462370.1| PREDICTED: cryptochrome-1-like [Cavia porcellus]
Length = 675
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIRGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVV 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCVTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|348529122|ref|XP_003452063.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 630
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/326 (29%), Positives = 138/326 (42%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN SL + + +V VY DP G S+ G + R FL++S+
Sbjct: 5 TIHWFRKGLRLHDNPSLKESLLGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDSSLRKLNSRLFVIRGQPTDVFPRLFKEWKITRLSYEYDSEPFGKERDAAIKKLASE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQLK 298
G+EV TLY LD + G+ P Y F+ ++ VE+ T E + +
Sbjct: 120 AGVEVTVRTSHTLYELDKIIELNGGQSPLTYKRFQTLISRMDPVEVPAESITAEIMGKCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S E +PSL +LG S VW GGETEAL RL K
Sbjct: 180 TPLSEDHDEKFGVPSLEELGFDTEGLSSAVW----------PGGETEALTRLERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 278 KNSSPPLS-------LYGQLLWREFF 296
>gi|348517126|ref|XP_003446086.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 800
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 140/328 (42%), Gaps = 51/328 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + +V VY DP G S+ G + R FL++ +
Sbjct: 5 SIHWFRKGLRLHDNPALREAVQGAATVRCVYFLDPWFAGSSNVGVN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKT-IEAL-DQLKG--- 299
G+EV TLY LD + G+ P Y F+ + ++ + +E L D L G
Sbjct: 120 AGVEVIVKISHTLYDLDKIIELNGGQPPLTYKRFQTLISRLDPPEMPVEMLTDTLMGRCV 179
Query: 300 LPSRGDVEPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------ 350
P D GD +PSL +LG S VW GGETEAL R+
Sbjct: 180 TPVSED--HGDKYGVPSLEELGFDTEGLPSAVW----------PGGETEALTRIERHLER 227
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 228 KAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRK 275
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 276 VKKNSSPPLS-------LYGQLLWREFF 296
>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome-1 [Equus caballus]
Length = 587
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 142/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPAG------LSPYLRFGCLSCRLFYFRL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 RKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 562
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 149/361 (41%), Gaps = 63/361 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S++WFR LRVHDN +L + S PV+ DP + K S + G R FL++S+
Sbjct: 13 SLIWFRKALRVHDNPALAAGIARAKSAQPVFVLDPW-FCKPS----RVGANRMRFLLQSL 67
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL L+ RGS L+V G+P VL K D V ++ + + A++
Sbjct: 68 RDLDATLRERGSSLLVLHGEPRVVLPRACKTWKVDLVTWEHDIEPYAKMRDTAVRGALER 127
Query: 246 EGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS-- 302
G+E G TLY ++++ K G+ PT Y F + V ++ ALD K +P+
Sbjct: 128 AGVECASSSGHTLYDVEEMLAKCHGKPPTTYSQFLKIVD--KMGAPAAALDAPKAMPAPF 185
Query: 303 -----------RGDVEPGDIPSLLDLG---LSQSAAMSQVWHGGKP---AANSMKGGETE 345
G + IP+L +LG + + GG+ + TE
Sbjct: 186 TGTAEETKELVAGVADAYGIPTLEELGYEAMHDDEGFQAI--GGETEGLRRLRRQLSRTE 243
Query: 346 ALQRLKK--------FAAEYQAQP-PKG----------------NKDGNHDSIYGANFSC 380
+ +K F A +P PK N N D + + +
Sbjct: 244 WVHTFQKPDTNPTTLFHALGAKKPKPKSPFEIAARDAGSKNDATNTAANSDMLMTPS-TT 302
Query: 381 KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
+SP++ GC+SPR + EL +G+ S + LM +L+WR+F+
Sbjct: 303 ALSPYMKFGCVSPRVFYHELNAVLAKF-------EGKGQPSQPPVS-LMGQLMWREFYYL 354
Query: 441 I 441
+
Sbjct: 355 V 355
>gi|404312667|ref|NP_001017311.2| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis]
gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
Length = 618
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 142/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWKITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASTTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|449298498|gb|EMC94513.1| hypothetical protein BAUCODRAFT_53277, partial [Baudoinia
compniacensis UAMH 10762]
Length = 579
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/376 (26%), Positives = 154/376 (40%), Gaps = 66/376 (17%)
Query: 124 RASIVWFRNDLRVHDN-------ESLNTANNESVSVLPVYCF------------------ 158
R I R DLR+ DN + ++ VLP+Y F
Sbjct: 1 RILIYLVRRDLRLADNPVFHEIGRLFSQSHQPFTHVLPIYIFPAEQIEVSGFLSPGVTRS 60
Query: 159 ---DPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAK 215
+ R Y GF + G RA F+ ESV DL+++L++ GS L +RVG V+ +
Sbjct: 61 PYPEARSY---VGGFWRCGRLRAQFIAESVWDLKRDLESTGSGLQIRVGSVRDVVQSILD 117
Query: 216 A------IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPFK 267
++ +E + +E + EE++ M EG E K W Y +DD LPF+
Sbjct: 118 GYRERHDCEVHGLWMTKEDAWEEYEEEERVGDLMTAEGKEFK-IWTDEKYLVDDRDLPFQ 176
Query: 268 LG-EMPTNYGGFREKVKGVEI--RKTIEALDQLKGLPSRG--DVEPGDIPSLLD------ 316
E+ + FR+ V+ + RK + ++L LP P IP LD
Sbjct: 177 DARELSDVFTSFRKTVEPLREAPRKELPRPEKLPPLPDFVPPQAPPFTIPDSLDGTIAAL 236
Query: 317 -------LGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGN 369
L ++ M G +A+ GG +R+ K ++G
Sbjct: 237 FEPLDENLEITDMPTMPP----GTQSAHPFVGGSQPGRERIHHLIESGSMTAYKDTRNG- 291
Query: 370 HDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 429
+ G +FS K+S WLA+GC++ R + L + + K G G+ +
Sbjct: 292 ---LLGLDFSTKLSAWLALGCITARQVHWRLVEFEDGTTDLGKDAPGYGKGENKGTAAVR 348
Query: 430 FELLWRDFFRFITKKY 445
FELLWRD+ R T+K+
Sbjct: 349 FELLWRDYMRLCTRKF 364
>gi|88859578|ref|ZP_01134218.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
gi|88818595|gb|EAR28410.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas tunicata D2]
Length = 437
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 146/328 (44%), Gaps = 45/328 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRA--S 179
+++ + F +DLRV DN +L + +++ +Y P+D S F +T P A
Sbjct: 1 MKKIGLFIFDHDLRVLDNPALKVLADSVDTLICLYVHVPQD--AFSQQFSQTQPSAAKLG 58
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL + + +L +NL+ LV+ G +V+ K G + +E + +
Sbjct: 59 FLQQHLVELDENLRLLNQFLVIEHGSVPSVVSNYIKHYGITDIGRTIHAGFNEQHHWQYL 118
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
+A ++ GS+L+ L DLPF+L ++P ++ R+ + + + +EAL L
Sbjct: 119 QATFP--AVKFCAHSGSSLFRLADLPFELADLPKSFTPCRKLFEQLTVPAPLEALTYLP- 175
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAA--NSMKGGETEALQRLKKFAAEY 357
P LL + H KP+A GGE A L + +
Sbjct: 176 ------------PPLLSTEHKK--------HDLKPSAFNRYYNGGEITAHAYLHHY---F 212
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
++ P K+ +++ G +FS K+S +LA G LSPR + LK+ ++ A
Sbjct: 213 SSKAPSIYKE-TRNALMGDDFSTKLSGFLAHGALSPRQIMAALKRYESTQGA-------- 263
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + +K+
Sbjct: 264 ----NESTYWIYFELLWREYFYWYARKH 287
>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
Length = 598
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + +V VY DP G ++ G + R FL+ES+
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGSANVGVN-----RWRFLLESL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I ++
Sbjct: 60 EDLDTSLRKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEM-----PTNYGGFREKVKGVEI-RKTIEALDQLKG 299
G+E TLY+ P ++ EM P + F+ V +E+ RK + + Q +
Sbjct: 120 YGVETVVRNTHTLYN----PDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQM 175
Query: 300 LPSRGDV-----EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-- 352
R + E +PSL +LG VW KGGETEAL+RL K
Sbjct: 176 ARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVW----------KGGETEALERLNKHL 225
Query: 353 ----FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
+ A ++ P+ + S G +SP+L GCLS R + L+ +
Sbjct: 226 DRKAWVANFER--PRISGQSLFPSPTG------LSPYLRFGCLSCRVFYYNLRDLFMKL- 276
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
SS S L +LLWR+FF
Sbjct: 277 --------RRRSSPPLS--LFGQLLWREFF 296
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 147/318 (46%), Gaps = 30/318 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
I WFR DLR+ DN +L+ A S V+P++ D + +TG R +F+I ++
Sbjct: 4 IHWFRRDLRLRDNPALSGAAARSGGRVIPLFILD-----DAILHAPRTGMARVAFMIAAL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ARGS LVVR G+P VL +L A GA V +R+ + + ++ IEA ++D
Sbjct: 59 RDLDASLRARGSRLVVRRGRPSDVLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRD 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRK--TIEALDQLKGLPS 302
+ + + DD+ G T Y +R + + VE R+ + A + P
Sbjct: 119 LNVATFIAADAVIMEPDDVRTDDGRPYTVYTPYRRRWRALVEQRRDDVLRAYEPPVLQPV 178
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
V IP DL +S + ++ PA GGET RL F
Sbjct: 179 PDGVADLPIPDNPDLDVS---VIQRI-----PA-----GGETTGAARLAAFLDPRATHGI 225
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
G DG ++ + ++SP+L GC++PR+ L+ + A + D E ++
Sbjct: 226 AGYADGR--NLLAEPATSRLSPYLRFGCVAPRA---ALRAALNLLDRAGEEQDAECAATL 280
Query: 423 AGS--NWLMFELLWRDFF 438
S W+ EL WRDF+
Sbjct: 281 TRSIETWIG-ELAWRDFY 297
>gi|410965445|ref|XP_003989258.1| PREDICTED: cryptochrome-1 [Felis catus]
Length = 587
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSELI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
Length = 433
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 58/338 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFL 181
+++WFR LR+HDN SL A + S +V PV+ DP D S G + G R FL
Sbjct: 2 ALLWFRKGLRLHDNPSLEAACHGSRNVYPVFVLDPWFLAPDPSAPSPGSARVGINRIQFL 61
Query: 182 IESVSDLRKNLQARGSDLVVRVGKP-ETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+ES+ DL +NL +RGS L++ G P + + +L + R+ KI+
Sbjct: 62 LESLQDLDRNLSSRGSKLLLVHGNPIQWRIRKLCFEFDTEPYALDRDA---------KIK 112
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
KD+GIE+ T+++ D L K G+ P + F + + + T +
Sbjct: 113 EHAKDKGIELHCSVSHTIFNPDLLIAKNGGKAPLTFQSFCKNL----VPATKPIGNGPSS 168
Query: 300 LPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------ 350
+P GD ++ +P+L +LG + + +GGET L RL
Sbjct: 169 IPPTGDLHGIKVVPVPTLEELGYTDFHE----------DFSPFRGGETVGLTRLEDSLAN 218
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+K+ E++ PKG+ + + + +SP+L GCLS R + +K+ +
Sbjct: 219 EKWVCEFEK--PKGDP-----TAFIKPATTVLSPYLKFGCLSSRLFYSRVKEVYSR---- 267
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
+S +S S L +LLWR+F F T Y++A
Sbjct: 268 -----AKSFTSPPVS--LEAQLLWREF--FYTAAYATA 296
>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
Length = 605
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 140/327 (42%), Gaps = 55/327 (16%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ + DL
Sbjct: 1 WFRKGLRLHDNPALRECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCLEDL 55
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK---- 244
NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 56 DANLRKLNSRLFVIRGQPADVFPRLFKEWKITKL----SIEYDSEPFGKERDAAIKKLAS 111
Query: 245 DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +++
Sbjct: 112 EAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVMEKC 171
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------K 351
E +PSL +LG S VW GGETEAL RL K
Sbjct: 172 TTPVLDDHDEKYGVPSLEELGFDTEGLPSAVW----------PGGETEALTRLERHLERK 221
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 222 AWVANFER--PRMNANSLLASTTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 269
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 270 KKNSSPPLS-------LYGQLLWREFF 289
>gi|407072254|ref|ZP_11103092.1| deoxyribodipyrimidine photolyase [Vibrio cyclitrophicus ZF14]
Length = 495
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 143/333 (42%), Gaps = 43/333 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTAN---NESVSVL--PVYCFDPRDYGKSSSGFDKTGPY 176
+++ + F NDLR DNE L A+ +E + V+ P R + K + G
Sbjct: 1 MKKIGLYLFTNDLRADDNELLGKASRLVDELICVVIEPNLSVFSRKFAKEQ----QYGAE 56
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPET--------VLVELAKAIGADAVYAHREV 228
RA F+ +S++DL L G +L+V T L E+ K+ A ++
Sbjct: 57 RAKFISQSITDLESRLANLGQELIVLRSSTLTDEEMSRDFALSEIIKSQQATHLFVSHHC 116
Query: 229 SHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
DE + I+ + ++ STL L+ LPF+L ++P ++ FR+ V+ + I
Sbjct: 117 GFDERHLVQSIQFNFPKLILMQQH--HSTLLELEQLPFELSKLPRSFTKFRKLVEHLPID 174
Query: 289 KTIEALDQLKGLP---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETE 345
++ L +P S + + L+ S H S GGE
Sbjct: 175 TQSLSITTLPPMPKALSHCHSKQASNSKFDEHCLNISNTNVNGLHNS-----SFIGGEQA 229
Query: 346 ALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT 405
L L +Y + P ++ G S K SPWLA+GC+SP++++ L +
Sbjct: 230 GLAHLH----DYFSHPYAHQYKQTRNAFDGKENSTKFSPWLALGCVSPKTIYRNLVQF-- 283
Query: 406 SISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ + GS+ + + W+ FELLWR++F
Sbjct: 284 ---------EAKHGSNDS-TYWIFFELLWREYF 306
>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
Length = 587
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T + +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPVSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 140/316 (44%), Gaps = 36/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDPAILER-----DDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIR--KTIEALDQLKGLPSR 303
GIEV+ FW L H L + P T Y F + + KT+E L L+
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQLAKASPKTLENLQGLEENEGE 179
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
E ++P+L +LG + W P A GE A RL++F Q
Sbjct: 180 KLTETINLPTLENLGFT--------WQNPLPLA----PGEKAAHSRLEEFC---QGVINN 224
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
+D N + G + ++S L G + R+++ + + A + +
Sbjct: 225 YQEDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCCAQE--------AKDS 273
Query: 424 GSNWLMFELLWRDFFR 439
W EL WR+F++
Sbjct: 274 IITWQQ-ELAWREFYQ 288
>gi|427711391|ref|YP_007060015.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
gi|427375520|gb|AFY59472.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 6312]
Length = 486
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 142/324 (43%), Gaps = 37/324 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR+ D+ L A ++ V+ ++CFDP+ G + R ++L+ +
Sbjct: 17 LLWHRRDLRIQDHLGLAAAREKTAKVVGLFCFDPKILGG-----EDIAAVRVAYLVGCLE 71
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL + GS L++ G+P TV+ +LA+A+ A A+Y H +V ++ + A+
Sbjct: 72 DLAQQYHQAGSQLLILQGEPTTVIPKLAQALKAQALYWHCDVEPYAQARDKAVAQALAKA 131
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG-D 305
GI V+ FW L + + G + T Y F + + + + L Q +GL S+ D
Sbjct: 132 GISVQTFWDQLLVAPEAIRTGSGAIYTVYSPFWKNWQQHPKAQPVPTLHQAQGLTSQELD 191
Query: 306 VEPGD----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ + +P+ DLG + + V G P A + RL+ F Q
Sbjct: 192 IAQQNGMILLPTTQDLGFTWDQEL--VLAPGVPPAQA----------RLEDFC---QRAI 236
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
D N I G + +S L G L R ++ A S A ++ ES +
Sbjct: 237 NSYEPDRNFPGIAG---TSGLSAALKFGVLGIREIW------AASREAQAQARSEESLT- 286
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
A W EL WR+F++ + +
Sbjct: 287 -AIRTWQQ-ELAWREFYQHVMYAF 308
>gi|387015300|gb|AFJ49769.1| Cryptochrome-1-like [Crotalus adamanteus]
Length = 622
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 139/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 SVHWFRKGLRLHDNPALREVIEGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNISKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LATEAGLEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 STCITPVSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|452822749|gb|EME29765.1| deoxyribodipyrimidine photo-lyase [Galdieria sulphuraria]
Length = 545
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 135/306 (44%), Gaps = 27/306 (8%)
Query: 117 NNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
+ G I+ +IVWFR LR+HDN +L A + + P++ DP DK G
Sbjct: 46 DTGTHIKGPTIVWFRKSLRLHDNPTLQRAVQLASELFPLFILDPYYINP-----DKIGFQ 100
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R F++E + DL +L+ S L+V G+P VL K + ++ +
Sbjct: 101 RFRFMLECMKDLDHSLRKYQSKLLVIYGEPVNVLENCCKTWKCSYLCFEKDSDIYSRNRD 160
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMP----TNYGGFREKV----KGVEI 287
EK+ MK G++ G TLY LD L KL G P T++ F E++ K +E
Sbjct: 161 EKVLQRMKGLGVQCFVESGHTLYDLDMLVAKLNGNSPPTQMTSFLKFIEQIGPPPKPIET 220
Query: 288 RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEAL 347
+ I L K L S + +P + ++ + +P +GGE++AL
Sbjct: 221 VRNIPPLR--KELLS--SISISKVPEIEEIPGYELIT--------EPTPCPFQGGESKAL 268
Query: 348 QRLKKFAAEYQAQ-PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
+R+++ Q + + +K + +SP++ G LS R F ELK+ S
Sbjct: 269 ERMQQALNREQGKWIVRFSKPHTSPVSLDPPSTTVLSPYIKCGALSVRLFFWELKRVEDS 328
Query: 407 ISAASK 412
S +K
Sbjct: 329 FSVKTK 334
>gi|194332801|ref|NP_001123706.1| uncharacterized protein LOC100170456 [Xenopus (Silurana)
tropicalis]
gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
Length = 557
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 143/322 (44%), Gaps = 48/322 (14%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FR LR+HDN +L TA S V PVY D R++ SSS G R +F ++S+ DL
Sbjct: 9 FRKGLRLHDNPTLVTALETSDVVYPVYILD-RNFMTSSSVI---GSKRWNFFLQSIEDLH 64
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
NLQ S L V G E VL E + V E+ +E+I A ++ G E
Sbjct: 65 CNLQKLNSCLFVIQGDYERVLREHVEKWNITQVTFDLEIEPYYKGLDERIRAMGQELGFE 124
Query: 250 VKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV----EIRKTIEALDQLKGL-PSR 303
V TLY + L G+ P Y F + + + + I + D +K + P++
Sbjct: 125 VVSMVAHTLYDIKKILALNCGKPPLTYKNFLRVLSMLGNPDKPARQITSEDFIKCITPTK 184
Query: 304 GDVEP-GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK------FAAE 356
E IP DLG+S+ + + GGE+EAL RL++ + A
Sbjct: 185 LAAEEYYRIPKPEDLGISKDCPTNWI------------GGESEALSRLEQHLEKQGWVAN 232
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
++ P+ + S G +SP+ ++GCLS R F L ++I A SK N
Sbjct: 233 FKK--PQTIPNSLLPSTTG------LSPYFSLGCLSVRVFFHRL----SNIYAQSK-NHS 279
Query: 417 ESGSSGAGSNWLMFELLWRDFF 438
S G +LLWR+FF
Sbjct: 280 LPPVSLQG------QLLWREFF 295
>gi|84385647|ref|ZP_00988678.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
gi|84379627|gb|EAP96479.1| deoxyribodipyrimidine photolyase [Vibrio splendidus 12B01]
Length = 462
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 149/329 (45%), Gaps = 43/329 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRAS 179
+++ + F NDLR++DN+ L A +SV L +P + + +R +
Sbjct: 1 MKKIGLYLFTNDLRINDNQLLYYAA-QSVDKLICVIVEPTLVRFSADLAQEQSYSAHRQA 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVG---KPETVLVELAKAIGADAV---YAHREVSHDEV 233
F+ +S+++L NL G LVV +P+T L+ I + V +A+ +DE
Sbjct: 60 FVSQSIANLESNLVKLGQQLVVIRSNHLEPDTAEKTLSHIIVSQHVTHFFANAHCGYDER 119
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+ I+ + + + + STL+ +LPF+L ++P+++ FR+ V+ +++ +
Sbjct: 120 QLIRSIQRQSPNLVMCLPH--HSTLFDSHELPFELSKVPSSFTKFRKLVEHLDVNRNETV 177
Query: 294 LDQLKGLP--SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
+ LP R + SL +S +S W GGE L L+
Sbjct: 178 I---SALPPAVRLALTSTSTISLFSSPNDESVVISDYW-----------GGEGAGLAHLE 223
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ + A K ++ G S K SPWLA+GC+SP++++ LK+ A
Sbjct: 224 NYFSHDYAFNYKQTRN----VFDGIENSTKFSPWLALGCVSPKTIYCHLKQ----FEADH 275
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRF 440
ND + W+ FELLWR++F +
Sbjct: 276 GIND--------STYWIYFELLWREYFYW 296
>gi|348519202|ref|XP_003447120.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 570
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 137/326 (42%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN SL + S ++ +Y DP G S+ G + R FL++ +
Sbjct: 5 TIHWFRKGLRLHDNPSLKDSIRGSDTLRCIYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQINRLSYEYDSEPFGKERDAAIQKLANE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQLK 298
G+EV TLY+LD + + P Y F+ ++ VE+ T E L
Sbjct: 120 AGVEVMVRISHTLYNLDKIIELNGNQPPLTYKRFQAVINRMDAVEMPAETITFEVLKNCV 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S E +PSL +LG + VW GGETEAL RL K
Sbjct: 180 TPISEDHDEKFGVPSLEELGFETEGLTTAVW----------PGGETEALMRLERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 278 KNHTPPLS-------LYGQLLWREFF 296
>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
Length = 598
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + +V VY DP G ++ G + R FL+ES+
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGSANVGVN-----RWRFLLESL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I ++
Sbjct: 60 EDLDTSLRKLNSRLSVVRGQPTDVFPRLFKEWNVTRLTFEYDSEPYGKERDAAIIKMAQE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEM-----PTNYGGFREKVKGVEI-RKTIEALDQLKG 299
G+E TLY+ P ++ EM P + F+ V +E+ RK + + Q +
Sbjct: 120 YGVETVVRNSHTLYN----PDRIIEMNNHSPPLTFKRFQAIVNRLELPRKPLPTITQEQM 175
Query: 300 LPSRGDV-----EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-- 352
R + E +PSL +LG VW KGGETEAL+RL K
Sbjct: 176 ARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVW----------KGGETEALERLNKHL 225
Query: 353 ----FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
+ A ++ P+ + S G +SP+L GCLS R + L+ +
Sbjct: 226 DRKAWVANFER--PRISGQSLFPSPTG------LSPYLRFGCLSCRVFYYNLRDLFMKL- 276
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
SS S L +LLWR+FF
Sbjct: 277 --------RRRSSPPLS--LFGQLLWREFF 296
>gi|392547623|ref|ZP_10294760.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas rubra ATCC
29570]
Length = 454
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 142/325 (43%), Gaps = 30/325 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WF DLR+ DN +L+ A S +L VY +PR +++ G +A+F+ +
Sbjct: 2 KKTLYWFTQDLRLDDNLALDFATQNSDHILFVYVINPRYRIQTNYHCKLLGDRQATFIAD 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ L L + G L+V G+P VL L D V +V E KS +KI +
Sbjct: 62 SLLTLSSQLDSCGHSLLVVEGEPHQVLPHLVSKYEIDQVICAEQVGLYERKSVQKIRKEL 121
Query: 244 KDEGIEVKYFWGSTLY---HLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ + FW TL+ + + LG N+ FR++V+ + + + +
Sbjct: 122 G--AVPLHSFWQHTLFEHTQIQTVSRDLG----NFTQFRKRVE----KAPLSVVTLCRFD 171
Query: 301 PSRGDVEPGDIPSLLDLG-LSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
PSR + S +LG L Q A Q GE A L+ +
Sbjct: 172 PSRLPAPLITVSSANELGILHQWHAQRQDRLTETRVPLDFPAGEEAAQAHLRDYFDSGVV 231
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
+ K + +++ G S K+SP+LA+G LSPR ++ + + A
Sbjct: 232 RRYKETR----NALDGWLNSTKMSPYLALGNLSPRQVWWATEAFEKQVVA---------- 277
Query: 420 SSGAGSNWLMFELLWRDFFRFITKK 444
+ W+ FELLWR++F+++ K
Sbjct: 278 --NESTYWIKFELLWREYFQWLCLK 300
>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
gi|357623166|gb|EHJ74426.1| cryptochrome 2 [Danaus plexippus]
Length = 742
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 134/327 (40%), Gaps = 36/327 (11%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRA 178
G + ++ WFR LR+HDN +L ++ + V+ DP S+ G +K
Sbjct: 24 GVPKEKHTVHWFRKGLRLHDNPALREGLVDATTFRCVFIIDPWFASSSNVGINK-----W 78
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
FL++ + DL KNL+ S L V G+P L +L + G A+ + +
Sbjct: 79 RFLLQCLEDLDKNLRKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHN 138
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV------EIRKTI 291
I ++ GI+V TLY LDD+ K G+ P Y F+ + + E ++
Sbjct: 139 IMTKCREVGIQVTSRVSHTLYKLDDIIEKNGGKAPLTYHQFQALIASMPPPPSAEPTISL 198
Query: 292 EALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
E L++ S E +P+L +LG +W GGE EAL RL+
Sbjct: 199 ETLNRAVTPISDNHDERFGVPTLEELGFDTEGLKPPIW----------IGGENEALLRLE 248
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ G +S+ + +SP+L GCLS R + +L + I
Sbjct: 249 RHLERKAWVASFGRPKMTPESLLSS--QTGLSPYLRFGCLSTRLFYYQLSELYKRIKQE- 305
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
S G ++LWR+FF
Sbjct: 306 -----RPPLSLHG------QILWREFF 321
>gi|432943720|ref|XP_004083252.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 624
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN SL + + +V VY DP G S+ G + R FL++S+
Sbjct: 5 TIHWFRKGLRLHDNPSLKESLLGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL +L+ S L V G+P V L K + A +D ++ +AA+K
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFK----EWKIARLSYEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ ++ VE+ T E +
Sbjct: 116 LASEAGVEVTVRVSHTLYDLDQIIELNGGQSPLTYKRFQTLISRMDPVEMPVESITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 GKCTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 RKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|358055721|dbj|GAA98066.1| hypothetical protein E5Q_04748 [Mixia osmundae IAM 14324]
Length = 601
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 153/363 (42%), Gaps = 88/363 (24%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVL-PVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
I WFR DLR+HD+ +L A + VL P +CFDPR + + GP R FL+ES+
Sbjct: 5 IYWFRTDLRLHDSPALQAALDLKPDVLFPTWCFDPRYVYEQ-----RVGPNRWKFLLESM 59
Query: 186 SDLRKNLQARG--SDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SD + S L V G P T+L L + + ++ ++ ++ +E
Sbjct: 60 SDTSAAITKVNPKSQLFVLRGHPTTILPALLRKWKISDIVWEKDDDPYTMERDKAVEKLA 119
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGV----------------- 285
KD G++V G TLY + + K P +YG F + ++G+
Sbjct: 120 KDAGVKVHVVHGHTLYDAEAIEAKTKGKPYVSYGPFVKILEGLPQPPRPIDAPSSLPNPG 179
Query: 286 -----EIRKTIEALDQLKGLPSRGDVEPGD---------------IPSLLDLGLSQSAAM 325
+++++ ++D K + + G+ +P++ +LG++++ +
Sbjct: 180 PTDLADLKRSEHSVDTWKKNDNNAENRDGEDKIYASFTGPDGKFSVPTMEELGMAKATGI 239
Query: 326 SQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA----QPPKGNKDGNHDSIYGANFSCK 381
GGETEAL+RL+ + + +A + PK N + +
Sbjct: 240 HP-------------GGETEALKRLEAYMKDKEAIINFEKPKTNP-----GAFDPAATTV 281
Query: 382 ISPWLAMGCLSPRSMF----DELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 437
+SP+L G LS R+ + D +K T + S L+ + LWR+F
Sbjct: 282 LSPYLKFGALSVRTFYWRLQDVVKGTKHTQPPVS----------------LIGQCLWREF 325
Query: 438 FRF 440
F +
Sbjct: 326 FHY 328
>gi|229918425|ref|YP_002887071.1| DASH family cryptochrome [Exiguobacterium sp. AT1b]
gi|229469854|gb|ACQ71626.1| cryptochrome, DASH family [Exiguobacterium sp. AT1b]
Length = 404
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 137/319 (42%), Gaps = 52/319 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I+W++NDLRV D+ L A + + + P + ++ G G R FL ES+
Sbjct: 3 TIIWYQNDLRVDDHLPLEEALHHDDPIEGHFFISPNQFIENRYGVIPLGNERLRFLKESL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
D+ +L A G V VG P L +D + R V ++E + E ++ MK
Sbjct: 63 EDVSGSLDALGIPFYVHVGHP------LETLDPSDRLLFQRAVGYNERRRENEV---MKR 113
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
K F G TL+ +D PF+ +MP + E RK +E D
Sbjct: 114 WKGTYKTFEGFTLFEKEDNPFE--KMPFLF---------TEFRKAVEY-----------D 151
Query: 306 VEPGDIPSLLDLGLSQSAAMS---QVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
V P ++ S ++ Q A KGGE A +RL +Y + P
Sbjct: 152 VRPRELISRKATAATREVTFPFSIQEVKQDPRTAFPFKGGELAAKRRLN----DYLSVPI 207
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+ K+ + +G + S K+S +LA G LSPR +F EL+ +
Sbjct: 208 RTYKETRNG--FGVDDSTKLSAYLANGSLSPRRVFFELEAHERTHGV------------N 253
Query: 423 AGSNWLMFELLWRDFFRFI 441
+ WL FELLWR+FF+++
Sbjct: 254 ESTYWLYFELLWREFFQWV 272
>gi|344266586|ref|XP_003405361.1| PREDICTED: cryptochrome-1-like [Loxodonta africana]
Length = 583
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 142/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWDITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|425901487|ref|ZP_18878078.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397883811|gb|EJL00298.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 481
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 145/338 (42%), Gaps = 57/338 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +LN A +V +Y PR + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALNVATQRGPTV-ALYLLSPRQWQAHDD-----APCKVDFWLRNLE 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L +L L++R + VL++L + + +A++ + E E + + + +
Sbjct: 57 QLSGDLARLNIPLLIRQAPSWEQAPQVLLQLCRELAIEALHVNEEYGIHESRRDTAVASL 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K +G+ + LD L F+ G + T GG+ + + + V + AL
Sbjct: 117 LKSQGVGFHSY-------LDQLLFRPGSVLTRSGGYFQVFSQFRKVCYNRLHSALPPQLA 169
Query: 300 LP---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA- 355
P + ++ +P ++ + + +W PA GET A QRL +FA
Sbjct: 170 APRAQAALRIKADALPQQVEGFPTPGPHLQTLW----PA------GETAAQQRLARFAEA 219
Query: 356 ---EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
YQA+ + G + ++SP+LA G LSPR + AA +
Sbjct: 220 QLDHYQAERDLPARPG----------TSQLSPYLAAGVLSPRQ----------CLHAALQ 259
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
N GE S G+ + ELLWR+F++ I Y +
Sbjct: 260 NNRGEFASGSPGAVTWINELLWREFYKHILVGYPRVSR 297
>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
Length = 587
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 139/328 (42%), Gaps = 51/328 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNI----AKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF- 353
+ E +PSL +LG S VW GGETEAL RL++
Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 354 ---AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
A+ + P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKASVANFERPRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKK 275
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 276 VKKNSSPPLS-------LYGQLLWREFF 296
>gi|86147737|ref|ZP_01066045.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
gi|85834518|gb|EAQ52668.1| deoxyribodipyrimidine photolyase [Vibrio sp. MED222]
Length = 466
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 153/330 (46%), Gaps = 41/330 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRAS 179
+++ + F NDLR++DN+ L+ A +SV L +P + + G +R +
Sbjct: 1 MKKIGLYLFTNDLRINDNQLLHYAV-QSVGKLICVIVEPTLVRFSADLAQEQSYGAHRQT 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVG---KPETVLVELAKAIGADAV---YAHREVSHDEV 233
F+ +S+++L NL G LVV +P+ L++ I V +A+ +DE
Sbjct: 60 FVSQSITNLESNLVKFGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAHCGYDER 119
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK---T 290
+ +++ + + + STL+ +L F+L ++P+++ FR+ V+ +++ +
Sbjct: 120 QLIHSLQSRHPNLITCLPH--HSTLFDQHELSFELSKVPSSFTKFRKLVEHLDVNRNETV 177
Query: 291 IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL 350
I AL L SL +SA +S W GGE L L
Sbjct: 178 ISALPPAVRLALTSTSTSTSTISLFSSPNDESAVISDYW-----------GGEDAGLAHL 226
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+ + + A K ++ + G S K SPWLA+GC+SP++++ LK+
Sbjct: 227 ENYFSHDYAFNYKQTRN----AFDGIENSTKFSPWLALGCVSPKTIYCHLKQF------- 275
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
+ + GS+ + + W+ FELLWR++F +
Sbjct: 276 ----EADHGSNDS-TYWIYFELLWREYFYW 300
>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
gi|108871687|gb|EAT35912.1| AAEL011967-PA [Aedes aegypti]
Length = 820
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 129/319 (40%), Gaps = 36/319 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN +L ++VS V+ DP G S+ G +K +R FL++ +
Sbjct: 47 VHWFRKGLRLHDNPALREGLKDAVSFRCVFVIDPWFAGSSNVGINK---WR--FLLQCLE 101
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL +NL+ S L V G+P L +L K G + + + I K+
Sbjct: 102 DLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEMCKEL 161
Query: 247 GIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
GIEV TLY L+ + K G P Y F+ + ++ E L + +
Sbjct: 162 GIEVISAVSHTLYKLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEPAITLDTIANATT 221
Query: 306 VEPGD------IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
+ D +P+L +LG +W GGETEAL RL++
Sbjct: 222 PQYEDHDDKYGVPTLEELGFETEGLKPPIW----------VGGETEALARLERHLERKAW 271
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
G S+ + +SP+L GCLS R + +L I A
Sbjct: 272 VASFGRPKMTPQSLLAS--QTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKACP------- 322
Query: 420 SSGAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 323 -----PLSLHGQLLWREFF 336
>gi|260772745|ref|ZP_05881661.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
metschnikovii CIP 69.14]
gi|260611884|gb|EEX37087.1| deoxyribodipyrimidine photolyase single-strand-specific [Vibrio
metschnikovii CIP 69.14]
Length = 451
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 138/327 (42%), Gaps = 38/327 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYC------FDPRDYGKSSSGFDKTGPYRAS 179
S+ WF NDLR+ DN L A S + Y D R +S+G K
Sbjct: 5 SLYWFTNDLRISDNPLLTQAAQNSHQLTCCYLIPSLTPLDQRFQVVASNGLAKQ-----R 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL+ES++DL LQ G L + G+ + L + + A+ +Y V D +
Sbjct: 60 FLLESLADLDAKLQTLGQSLQIATGEAVSQLCQFIELTEANHLYVSESV--DFAIHQTLR 117
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
E ++ + V L+ +LPF L +P ++ FR++V+ +E R + ++
Sbjct: 118 EVRLRYPQLTVVSLNTHRLFEQAELPFSLAALPDSFSVFRKQVESLEGRYSSQSARW--- 174
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
D+ L S A+ + + ++ +GGE+ AL+ L+ + + +
Sbjct: 175 ---NSDITALPPSVLPSSSSWLSTAIRSI-NLELRSSPLWRGGESAALEHLEDYFSSDAS 230
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
K ++ + S K SPWLA GCLS + L ND E+
Sbjct: 231 LIYKQTRNALDE----WESSTKFSPWLANGCLSIGRLLARL-------------NDYETQ 273
Query: 420 SSGAGSN-WLMFELLWRDFFRFITKKY 445
S W+ FELLWR++F++ KY
Sbjct: 274 RGANESTYWIYFELLWREYFQWYALKY 300
>gi|425452606|ref|ZP_18832423.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
gi|389765542|emb|CCI08602.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
Length = 474
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 140/316 (44%), Gaps = 36/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS LV+ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIR--KTIEALDQLKGLPSR 303
GIEV+ FW L + L + P T Y F + + KT+E L L
Sbjct: 121 GIEVETFWDQLLQAPGQV-LTLSKSPYTVYTPFWKNWSQLAKARPKTLENLQGLDENEGE 179
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
E ++P+L +LG + W P + GE AL RL++F Q
Sbjct: 180 KLTETINLPTLENLGFT--------WQNPLP----LTPGEKAALSRLEEFC---QGVINN 224
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
+D N + G + ++S L G + R+++ + + A + +
Sbjct: 225 YQEDRNFPAFDG---TSRLSAALKFGTIGIRTIWTATLELLENCRAEE--------AKNS 273
Query: 424 GSNWLMFELLWRDFFR 439
W EL WR+F++
Sbjct: 274 IITWQQ-ELAWREFYQ 288
>gi|390979651|ref|NP_001070765.2| cryptochrome 1a [Danio rerio]
gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 135/326 (41%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + SV VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEALDQLK 298
G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S E +PSL +LG S VW GGETEAL RL K
Sbjct: 180 TPLSDDHDEKFGVPSLEELGFDTEGLSSAVW----------PGGETEALTRLERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 278 KNSSPPLS-------LYGQLLWREFF 296
>gi|432863953|ref|XP_004070204.1| PREDICTED: cryptochrome-2-like [Oryzias latipes]
Length = 667
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 138/322 (42%), Gaps = 39/322 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + +V VY DP G ++ G + R FL+E++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADTVRCVYILDPWFAGAANVGIN-----RWRFLLEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I ++
Sbjct: 60 EDLDCSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDPEPYGKERDGAIIKMAQE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLKGLPSR 303
G+E TLY+LD + P + F+ V +E+ R+ + A+ Q + +
Sbjct: 120 FGVETVVRNSHTLYNLDRIIELNNNSPPLTFKRFQTIVSRLELPRRPLPAITQQQMDSCQ 179
Query: 304 GDVEPGD-------IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
+ GD IPSL +LG VW +GGE+EAL RL K +
Sbjct: 180 RQI--GDNHDQLYSIPSLEELGFRTERLPPAVW----------RGGESEALDRLSKHLDK 227
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
+ N S+Y + +SP+L GCLS R ++ L++ +
Sbjct: 228 KVWVASVEHTRVNKCSLYAS--PTGLSPYLRFGCLSCRVLYYNLRELYMKL--------- 276
Query: 417 ESGSSGAGSNWLMFELLWRDFF 438
S S L +LLWR+FF
Sbjct: 277 RKRCSPPLS--LFGQLLWREFF 296
>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
gi|118572250|sp|Q32Q86.1|CRY1_RAT RecName: Full=Cryptochrome-1
gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 588
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|118572249|sp|Q5IZC5.2|CRY1_ERIRU RecName: Full=Cryptochrome-1
gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
Length = 620
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 140/328 (42%), Gaps = 51/328 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWNIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF- 353
+ E +PSL +LG S VW GGETEAL RL++
Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 354 ---AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
A+ + P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKASVANFERPRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKK 275
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 276 VKKNSSPPLS-------LYGQLLWREFF 296
>gi|389686026|ref|ZP_10177349.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis O6]
gi|388550368|gb|EIM13638.1| deoxyribodipyrimidine photolyase [Pseudomonas chlororaphis O6]
Length = 481
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 145/338 (42%), Gaps = 57/338 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A +V+ +Y PR + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAATQRGPTVV-LYLLSPRQWQAHDD-----APCKVDFWLRNLE 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L +L L++R + VL++L + + +A++ + E E + + + +
Sbjct: 57 QLSSDLTRLNIPLLIRQAPSWEQAPQVLLQLCRELAVEALHVNEEYGIHESRRDAAVASL 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K +G+ + LD L F+ G + T GG+ + + + V + AL
Sbjct: 117 LKSQGVSFHSY-------LDQLLFRPGSVLTKSGGYFQVFSQFRKVCYNRLHSALPPQLA 169
Query: 300 LP---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-- 354
P + ++ +P ++ + + +W PA GET A QRL FA
Sbjct: 170 APRAQAALRIKADALPRQVEGFPTPGPHLQALW----PA------GETAAQQRLAHFAET 219
Query: 355 --AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
YQA+ K G + ++SP+LA G LSPR + AA +
Sbjct: 220 QLVHYQAERDLPAKPG----------TSQLSPYLAAGVLSPRQ----------CLHAALQ 259
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
N GE S G+ + ELLWR+F++ I Y +
Sbjct: 260 NNRGEFASGSPGAVTWINELLWREFYKHILVGYPRVSR 297
>gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 135/326 (41%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + SV VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEALDQLK 298
G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGPCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S E +PSL +LG S VW GGETEAL RL K
Sbjct: 180 TPLSDDHDEKFGVPSLEELGFDTEGLSSAVW----------PGGETEALTRLERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 278 KNSSPPLS-------LYGQLLWREFF 296
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 145/324 (44%), Gaps = 54/324 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIES 184
+IVWFR DLR+HD+ L A V+PV+ DP G+ +SG R +F+++
Sbjct: 6 AIVWFRRDLRLHDHPPLVRALAAHARVVPVFVLDPAIVRGRFASG------ARTAFMLDC 59
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ +L +L+ RGS LVVR G+PE L LA+ IGA AV+ + + + + ++ +A+
Sbjct: 60 LRELDADLRERGSGLVVREGRPERELPALAREIGAAAVHWASDATPYAIARDRRVRSALA 119
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG-------FREKVKGVEIRKTIEALDQL 297
V G + D +G T GG F + +E R L
Sbjct: 120 AAQPAVAAVPGPGNFVAD-----VGRPRTRAGGPYTVFTPFHRAWQQLERRTVHRTPAVL 174
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
LP+ + G +PSL LGL+ + P A +++ GE A + +++ +
Sbjct: 175 PPLPA--GLRRGALPSLAALGLTDELS---------PTARAVEPGERAARRAAERWLDGH 223
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
G+ +HD + G + +SP+L GCLS R E ++ A
Sbjct: 224 L-----GDYARDHDRLAGG--TSALSPYLHHGCLSAR----ECEQRAVR----------- 261
Query: 418 SGSSGAGSNWLMFELLWRDFFRFI 441
G G+ + +L WRDF+ +
Sbjct: 262 --RGGEGAEAFVRQLAWRDFYAHV 283
>gi|390437938|ref|ZP_10226447.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
gi|389838649|emb|CCI30571.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
Length = 474
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 144/317 (45%), Gaps = 38/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLASNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPKTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ E ++P+L +LG + W P + GE A RL++F Q
Sbjct: 179 EKLAETINLPTLENLGFT--------WQNPLP----LTPGEKAATSRLEEFC---QGVIN 223
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+D N + G + ++S L G + R+++ + + A N +
Sbjct: 224 NYQEDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITWQQ- 279
Query: 423 AGSNWLMFELLWRDFFR 439
EL WR+F++
Sbjct: 280 --------ELAWREFYQ 288
>gi|398876027|ref|ZP_10631187.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM67]
gi|398205319|gb|EJM92103.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM67]
Length = 481
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 147/323 (45%), Gaps = 37/323 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A + SV VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAASRGPSV-AVYLLSPEQWREHDD-----APCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R + VL++L + + DAV+ + E E + + + A
Sbjct: 57 ELNRALGELNIPLLIRTASRWDEAPKVLLDLCQQLKIDAVHVNEEYGIHESRRDAAVADA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+K +G++ + L+ + K G + FR KV + +++ +L + + S
Sbjct: 117 LKTKGVDFYSYLDQLLFSPGTVLTKTGTYFQVFSQFR-KVCYDRLHRSLPSLVRAPAVQS 175
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ +++ +IPS + + S + +W PA GE EA +RL F A+ Q
Sbjct: 176 KLNIDSDEIPSSVAGFDTPSDTLRALW----PA------GEAEARRRLDTF-ADAQIDYY 224
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K +D + ++S +LA G +SPR + AA + N GE S
Sbjct: 225 KSERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQSNQGEFESGK 269
Query: 423 AGSNWLMFELLWRDFFRFITKKY 445
G+ + ELLWR+F++ I Y
Sbjct: 270 VGAVTWINELLWREFYKHILVGY 292
>gi|398882406|ref|ZP_10637374.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM60]
gi|398198948|gb|EJM85898.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM60]
Length = 481
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 146/323 (45%), Gaps = 37/323 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A + SV VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAASRGPSV-AVYLLSPEQWREHDD-----APCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R + VL++L + + DAV+ + E E + + + A
Sbjct: 57 ELSRALGELNIPLLIRTASRWDEAPKVLLDLCQQLKIDAVHVNEEYGIHESRRDAAVAEA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+K G++ + L+ + K G + FR KV + +++ +L + L S
Sbjct: 117 LKTIGVDFYSYLDQLLFSPGTVLTKTGTYFQVFSQFR-KVCYDRLHRSLPSLVRAPALQS 175
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ +++ +IPS + + S + +W PA GE EA +RL F A+ Q
Sbjct: 176 KLNIDSDEIPSSVAGFDTPSDTLRALW----PA------GEAEARRRLDTF-ADAQIDYY 224
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K +D + ++S +LA G +SPR + AA + N GE S
Sbjct: 225 KSERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQSNQGEFESGK 269
Query: 423 AGSNWLMFELLWRDFFRFITKKY 445
G+ + ELLWR+F++ I Y
Sbjct: 270 VGAVTWINELLWREFYKHILVGY 292
>gi|37520353|ref|NP_923730.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
gi|35211346|dbj|BAC88725.1| DNA photolyase [Gloeobacter violaceus PCC 7421]
Length = 479
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 139/318 (43%), Gaps = 41/318 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVW R DLRVHDN +L A+ VL V+ DP + D T P R FL ESV
Sbjct: 5 AIVWHRRDLRVHDNPALWQASRTGGQVLAVFIVDPTIVER-----DDTAPARIYFLRESV 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L+K + G L VRVG+P LV LA+A+GA AVY + ++ + + + A++
Sbjct: 60 LELQKAYRTIGGRLAVRVGEPVQQLVALAQAVGAGAVYFNDDIEPYARERDARAAEALRA 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
GI V L+ ++ G P T Y F + K ++L+ P+
Sbjct: 120 AGITVHACAEILLHPAGEVLTAAGGKPYTVYTPFWRQWSAKPKPKPFPTPERLEA-PT-- 176
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM--KGGETEALQRLKKFAAEYQAQPP 362
VE P L L G+P A + GE L++L+ FA E
Sbjct: 177 -VEEQSFPELAQL--------------GRPFAGELLVSPGEQSGLEQLEAFARE------ 215
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+ G + G + + ++S L G + R+++ A ++ A W E
Sbjct: 216 GLYRYGERRDLPGCDGTSRLSAHLKFGTVGIRAVW------ARTMDA---WKQAEHDRDR 266
Query: 423 AGSNWLMFELLWRDFFRF 440
AG EL WR+F+++
Sbjct: 267 AGLAVWQQELGWREFYKY 284
>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
Length = 501
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 51/328 (15%)
Query: 125 ASIV-WFRNDLRVHDNESLNTANNESVS----VLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
AS++ WFR DLR+HDN +L A NE+ + + P+Y DP ++ G R
Sbjct: 5 ASVIHWFRLDLRLHDNLALRNAINEAENRKQILRPIYVIDP-------DIKNRVGCNRLR 57
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL +S+ +L +L+ + L V GK L +L + ++ D VK +E I
Sbjct: 58 FLFQSLKNLDTSLRKINTRLYVIKGKAIECLPKLFDEWHVKFLTLQVDIDADLVKQDEVI 117
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIE----AL 294
E + I V T+Y + + K G +P Y F V V+++ I+
Sbjct: 118 EEFCEANNIFVVKRMQHTVYDFNSVVKKNNGSIPLTYQKFLSLVSDVQVKDIIQISKGVS 177
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
D+ K S D + DIPSL + G+++S + GGE+E L+RL +
Sbjct: 178 DECKA--SDYDSQGYDIPSLEEFGVNESEL----------SECKYPGGESEGLKRLDVYM 225
Query: 355 AEYQ----AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
A+ Q + PK + + S + +SP+++ GCLS + + +LK+
Sbjct: 226 AKKQWVCNFEKPKSSPNSIEPS------TTVLSPYISHGCLSAKLFYHKLKQV------- 272
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
+G + S LM +L+WR+F+
Sbjct: 273 ---ENGSKHTLPPVS--LMGQLMWREFY 295
>gi|171684045|ref|XP_001906964.1| hypothetical protein [Podospora anserina S mat+]
gi|170941983|emb|CAP67635.1| unnamed protein product [Podospora anserina S mat+]
Length = 813
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 151/367 (41%), Gaps = 62/367 (16%)
Query: 130 FRNDLRVHDN---ESLNTANNESV--SVLPVYCFDPRD---------------YGKSSS- 168
R DLR DN + TA +E + LPVY FD + YG S
Sbjct: 35 IRRDLRTSDNPLFHAAATAPDEEKFDAYLPVYVFDAQQIDVSGFIQSAGATNPYGSPRSQ 94
Query: 169 --GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGK----PETVLVELAK---AIGA 219
G+ + GP+RA FL E+V DL + L+ S L +RVG+ ET++ ELAK IGA
Sbjct: 95 VAGYHRCGPHRAKFLGEAVWDLSETLKELKSGLFIRVGRIPDVVETLVSELAKKDAKIGA 154
Query: 220 DAVYAHREVSHDEVKSEEKIEAAM-KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF 278
+ +H E K++EK A++ K G + K W Y +DD ++ T
Sbjct: 155 VWMTSH---EGSEEKADEKAVASLCKKVGAKWK-LWVDEKYFIDDC--RVSSQSTKRSSC 208
Query: 279 ---REKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKP- 334
R V+ + + + P IP LD + A + + KP
Sbjct: 209 PCARSLVRFFRLSRRVHCRLSFDAALVAPQSSPFHIPDSLDRLVEFLVAPVKDFLPNKPE 268
Query: 335 ------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAM 388
+A+ +GGE ALQRLK + A D + + G FS K+S +LA
Sbjct: 269 YPKGAESAHPYQGGEHAALQRLKDLISSGAAT----TYDTTRNGLLGTEFSTKLSAFLAQ 324
Query: 389 GCLSPRSMFDELKKTATSISAASKWNDG-----------ESGSSGAGSNWLMFELLWRDF 437
GC++ R + + A K +G E + G + ELLWRD+
Sbjct: 325 GCITARQVHAAMDSFERGTDPAFKDVEGFGALTKEEGMSEDEAQNTGMESIRTELLWRDY 384
Query: 438 FRFITKK 444
R +K
Sbjct: 385 MRLCHQK 391
>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
gi|81882230|sp|P97784.1|CRY1_MOUSE RecName: Full=Cryptochrome-1
gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
Length = 606
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 GKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|254281574|ref|ZP_04956542.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219677777|gb|EED34126.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 439
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 136/312 (43%), Gaps = 40/312 (12%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WF+ DLR+ DN +L +++ + ++L VY + +G GP R FL ES+ L
Sbjct: 12 WFQRDLRLADNPAL-SSHVAADTLLCVYLMPKTGPWCNVTGM---GPQRDRFLRESLQAL 67
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
R L G DL+V G PE VL +L V A + E + E+++ + G+
Sbjct: 68 RDELNRLGQDLLVLEGSPELVLPDLVSRFDITEVSACTAPGYYERLTYERLQRRL---GV 124
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEP 308
+ G+TL+ D LP L + P + FR++V+ + I EP
Sbjct: 125 PFELHRGNTLFTEDQLPTGLADFPATFTPFRKQVEPLTITPPA--------------AEP 170
Query: 309 GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 368
+P +Q A+ PA + GG L+R+++F + + +
Sbjct: 171 VTLPPP---PAAQFDAIPPAQALPSPAL-PIPGGRAAGLRRVRQFIFDERR---IVSYKE 223
Query: 369 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 428
+ + G + S +SPWLA G LS R + E+ + A + WL
Sbjct: 224 TRNCLDGLDGSSSLSPWLANGNLSAREVAHEIFRFEREQLA------------NESTYWL 271
Query: 429 MFELLWRDFFRF 440
FELLWR+FF++
Sbjct: 272 FFELLWREFFQW 283
>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
Length = 543
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 149/334 (44%), Gaps = 59/334 (17%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP + SSS +R FL++S
Sbjct: 7 SSVHWFRKGLRLHDNPALLAALRGARCVRCVYILDPW-FAASSSSSGGVNRWR--FLLQS 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM- 243
+ DL +L+ GS L V G+P V L K G + + E +E+ A M
Sbjct: 64 LEDLDSSLRKLGSRLFVGRGQPADVFPRLFKEWGVTRLTFQ---YYSEPFGKERDAAIMK 120
Query: 244 --KDEGIEVKYFWGSTLYHLDDLPFKLGEM-----PTNYGGFREKVKGVEI-RKTIEALD 295
K+ G+EV TLY LD K+ E+ P Y F+ V +E+ R+ + ++
Sbjct: 121 LAKEAGVEVIVESSHTLYDLD----KIIELNGNSPPLTYKRFQAIVSRMELPRRPVPSIT 176
Query: 296 QLKGLPSRGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL 350
+ + R +++ +PSL +LG + + VW GGETEAL RL
Sbjct: 177 RQQMEKCRAEIKSTHDDTYGVPSLEELGFPRDNPGAAVW----------PGGETEALARL 226
Query: 351 ------KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTA 404
K + A Y+ P+ N + S G +SP+L GCLS R + L++
Sbjct: 227 DRHLERKAWVAHYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLRELY 278
Query: 405 TSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ K N S L +LLWR+FF
Sbjct: 279 QKV----KKNSPPPLS-------LFGQLLWREFF 301
>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1 [Pongo abelii]
Length = 586
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL +L+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|397603437|gb|EJK58421.1| hypothetical protein THAOC_21454 [Thalassiosira oceanica]
Length = 564
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 149/356 (41%), Gaps = 77/356 (21%)
Query: 125 ASIVWFRNDLRVHDNESLNTA---NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++ WFR LR+HDN +L A S+ PVY DP Y K RA FL
Sbjct: 9 VAMHWFRKGLRLHDNPALLHALSLTKNGGSIFPVYVVDPNSYQ-----LLKCSVNRARFL 63
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE------VKS 235
+E DL ++L+ GS L V G P VL E+ K G H DE ++
Sbjct: 64 LECCQDLDESLKRCGSRLYVATGDPVEVLPEMWKKFGV----THMTHESDETGEPYALQR 119
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALD 295
+ + A KD G+EV F TL L + + G N GG V T+ +
Sbjct: 120 DTAVAAVAKDAGVEVIDFTSETLRPLGN---REGGYVANCGGDASSVPA-----TMTSFQ 171
Query: 296 QLKGLPSRGDV-EPGDIPSLLDLGLS-----------------------QSAAMSQVWH- 330
+L +G++ EP D P D +S + + +W+
Sbjct: 172 KLFSRIDKGNIPEPLDAPKKEDFPISADEYENDYLTLKHPCDIPWPRGQNRSQIGPIWNR 231
Query: 331 --GGKPAANSMKGGETEALQRLKK-------FAAEYQAQPPKGNKDGNHDSIYGANFSCK 381
K ++ GGE+ AL RL+K + A+Y+ PK + D +
Sbjct: 232 ADANKVTSHIANGGESYALDRLQKTITARPNWTAQYEK--PKTSCTEVSDPS-----TTV 284
Query: 382 ISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 437
+SP+L++GC+SPR+++ ++ + + +K N + S G +LLWRDF
Sbjct: 285 LSPYLSIGCISPRTVWHAIE----TANKQAKTNRTQPPVSLHG------QLLWRDF 330
>gi|395819912|ref|XP_003783322.1| PREDICTED: cryptochrome-1 [Otolemur garnettii]
Length = 587
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 142/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITRL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEII 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLFDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2050
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 142/325 (43%), Gaps = 45/325 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
ASI WFR LR+HDN +L A + + PV+ DP + KS G R FLI +
Sbjct: 4 ASIHWFRKGLRLHDNPALMAALRDCKELYPVFILDPHLHNKS------VGINRCRFLIGA 57
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V GKPE V +L + + + + + +
Sbjct: 58 LRDLDLSLRNLNSRLFVVRGKPEEVFPKLFSQWKVTKLTYEYDTEPYSLSRDRTVTTLAE 117
Query: 245 DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV-EIRKTIEA--LDQLKGL 300
+ G++V Y TLY + L G+ P Y + VK + ++ I A +D LKG+
Sbjct: 118 ESGVQVVYRVSHTLYDTERVLEENNGKPPLTYNSMQAIVKKLGPPKRPISAPSMDDLKGV 177
Query: 301 --PSRGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL----KKF 353
P D E IP+L DLG + G P GGE EAL+RL KK
Sbjct: 178 STPCLEDHEKKYGIPTLEDLGHDPA---------GLP-EEKFPGGEQEALRRLEDQMKKT 227
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
+ + P+ + + S + +SP++ GCLS R+ + L S
Sbjct: 228 SWVCNFEKPQTSPNSLSPS------TTVLSPYVTFGCLSARTFWWRL----------SDV 271
Query: 414 NDGESGSSGAGSNWLMFELLWRDFF 438
G+ S+ S L +LLWR+FF
Sbjct: 272 YSGKKHSAPPVS--LHGQLLWREFF 294
>gi|443288138|ref|ZP_21027232.1| Deoxyribodipyrimidine photo-lyase [Micromonospora lupini str. Lupac
08]
gi|385881715|emb|CCH22325.1| Deoxyribodipyrimidine photo-lyase [Micromonospora lupini str. Lupac
08]
Length = 441
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 139/324 (42%), Gaps = 62/324 (19%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IV F DLRVHD+ +L T V+P+Y DP G S++ R FL +++
Sbjct: 6 AIVLFTRDLRVHDHPALATTCAAFDRVVPLYVLDPALAGLSAN--------RTRFLHQAL 57
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L+ RG DLVVR G P + LA +GA AV +VS+ + E ++ A +
Sbjct: 58 ADLRDALRERGGDLVVRRGDPVAETIRLAGEVGATAVALSADVSNHARRRERRLRAECER 117
Query: 246 EGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+ ++ F G T+ L P G+ + + R + A ++ LP
Sbjct: 118 HRLRLRLFPGLTVVEPGALRPGGGGDHYRVFSPYHRAWAAARWRDELAAPRRI-ALPD-- 174
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANS---MKGGETEALQRLKKFAAEYQAQP 361
V G +P+ PA S GGE A QRL + E
Sbjct: 175 GVRVGRVPA-------------------PPAGESPDAATGGERIARQRLTDWLPEL---- 211
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
G D HD + G + S ++SP+L GC+SP +S A++ +
Sbjct: 212 --GRYDDQHDDMAGDDTS-RLSPYLRFGCVSP-------------LSVANR--------A 247
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
G S + ++ WRDF+ +T +
Sbjct: 248 GDRSGPFVRQVCWRDFYYQVTAAF 271
>gi|425471493|ref|ZP_18850353.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
gi|389882607|emb|CCI36943.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
Length = 474
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 144/317 (45%), Gaps = 38/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQKK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPTTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
D E ++P+L +LG + W P + GE A RL++F Q
Sbjct: 179 DKLTETINLPTLENLGFT--------WQNPLP----LTPGEKAAHSRLEEFC---QGVIN 223
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+D N + G + ++S L G + R+++ + + A +
Sbjct: 224 NYQEDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAEE--------AKD 272
Query: 423 AGSNWLMFELLWRDFFR 439
+ W EL WR+F++
Sbjct: 273 SIITWQQ-ELAWREFYQ 288
>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
Length = 570
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 140/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + SV VY DP + SSSG G R FL++S
Sbjct: 8 SSVHWFRKGLRLHDNPALLAALRGANSVRCVYILDPW-FAASSSG----GVNRWRFLLQS 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V +L K G + + + + I K
Sbjct: 63 LEDLDSSLRKLNSRLFVVRGQPADVFPKLFKEWGVSRLTFEYDSEPFGKERDAVIMKLAK 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY D + G P Y F+ + +E+ + T + ++
Sbjct: 123 EAGVEVIVENSHTLYDSDRVIELNGHSPPLTYKRFQAIISRMELPRRLAPSVTRQQMEAC 182
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------K 351
+ R E +PSL +LG +W GGETEAL RL K
Sbjct: 183 RAEIKRNHDETYGVPSLEELGFHSENKGPAIW----------PGGETEALARLDRHLERK 232
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ + + S G +SP+L GCLS R + L++ +
Sbjct: 233 AWVANYER--PRMSANSLLASPTG------LSPYLRFGCLSCRLFYYRLQELYQKV---- 280
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 281 KKNSPPPLS-------LYGQLLWREFF 300
>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
Length = 588
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRWVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|399002467|ref|ZP_10705153.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM18]
gi|398124907|gb|EJM14403.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM18]
Length = 480
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 145/346 (41%), Gaps = 57/346 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A V VY P+ + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAAVRGPCV-AVYLLSPQQWLAHDD-----APCKVDFWLRNLG 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+LR+ L A L++R + VL+EL + + DAV+ + E E + + A
Sbjct: 57 ELRRALDALNIPLLIRQASRWDEAPKVLLELCQQLKIDAVHVNEEYGIHETHRDAAVAQA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALDQ 296
+K GI+ HLD L FK G + T G + + KV + ++ L
Sbjct: 117 LKARGIDFH-------SHLDHLLFKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPGLVA 169
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
L + + + PS ++ S ++ +W PA GETEA +RL F
Sbjct: 170 APALQAPLHISSDEPPSRVEGFDSPHDSLRALW----PA------GETEARRRLDAFVDA 219
Query: 357 ----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
Y ++ K G + ++S +LA G +SPR + AA +
Sbjct: 220 RIDYYHSERDFPAKPG----------TSQLSAYLAAGVISPRQ----------CLHAALR 259
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPAT 458
N GE S G+ + ELLWR+F++ I Y + P T
Sbjct: 260 SNQGEFESGKVGAVTWINELLWREFYKHILVGYPRVSRHRAFRPET 305
>gi|88798414|ref|ZP_01113999.1| Deoxyribodipyrimidine photolyase [Reinekea blandensis MED297]
gi|88778854|gb|EAR10044.1| Deoxyribodipyrimidine photolyase [Reinekea sp. MED297]
Length = 433
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 145/322 (45%), Gaps = 47/322 (14%)
Query: 128 VWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSD 187
+WF D R+ DN +L A E+ +L V+ + + + + GP+R FL S+S+
Sbjct: 1 MWFTQDQRLDDNPALRLAA-EADEMLCVFVVEQGWFQSRRYQYPQMGPHRWVFLQLSLSE 59
Query: 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM-KDE 246
L + LQ G L+V G+ E + L + + V R DE++ +E+ + E
Sbjct: 60 LNQRLQLHGQRLLVVYGQAEVEIGRLVERYDINRVVRARSPGTDELRQWRWLESQFPETE 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ +TL+ D + P ++ FR + R + A+ + LP+
Sbjct: 120 WCQAD---AATLFEDDQVAGLSRSWPMSFSAFRRLAE----RWVVPAVTAMPQLPN---- 168
Query: 307 EPGDIPSLLDLGLSQSAAMSQV----WHGGKPAANSM-KGGETEALQRLKKFAAEYQAQP 361
+ + +SQ+ W A++SM GGE+EAL+ L + A Q
Sbjct: 169 -------------TITQQISQLTLPDWLPNARASHSMFDGGESEALRHLDCYLASDYPQT 215
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
K +++ D + S K+SPWL G LS R + +L + D + G+S
Sbjct: 216 YKRDRNAIDD----WDSSSKMSPWLNAGNLSARRLKQKLDEY-----------DQQHGAS 260
Query: 422 GAGSNWLMFELLWRDFFRFITK 443
G++WL ELLWR++F+++ +
Sbjct: 261 D-GTHWLFVELLWREYFQWLAQ 281
>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 555
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 36/240 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+TA S V+ ++C DP K D P R ++LI +
Sbjct: 6 LFWHRRDLRISDNIGLSTARQRSPHVVGIFCLDPDILEK-----DDVAPARVTYLIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++N Q GS L++ GKP + LA+++ A AV+ + +V +E++ A++++
Sbjct: 61 ELQQNYQQAGSQLLILKGKPSQAIPILAESLKAQAVFWNLDVEPYAQTRDEQVSNALQEK 120
Query: 247 GIEVKYFWGSTLY------HLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
GI + FW L+ L P+K+ Y F + ++AL+ ++GL
Sbjct: 121 GIATEKFWDQLLHAPGKILTLSKEPYKV------YTPFWRNWSQELKKSPVQALEDVQGL 174
Query: 301 PSRG---DVEPG--DIPSLLDLG-LSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ E G D+P+ DLG L ++ M + GET A +RL++F
Sbjct: 175 NQQQISLAKEAGIIDLPTAKDLGYLWENPLM-------------LNPGETAAKERLQEFC 221
>gi|348523572|ref|XP_003449297.1| PREDICTED: cryptochrome-2-like [Oreochromis niloticus]
Length = 672
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 138/324 (42%), Gaps = 43/324 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + +V VY DP G ++ G + R FL+E++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADAVRCVYILDPFFAGAANVGIN-----RWRFLLEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I ++
Sbjct: 60 EDLDSSLKKLNSRLFVVRGQPTDVFPRLFKEWNVTRLTFEYDPEPYGKERDGAIIKMAQE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEM-----PTNYGGFREKVKGVEIRK------TIEAL 294
G+E TLY+LD ++ EM P + F+ V +E+ + T + +
Sbjct: 120 FGVETIVRNSHTLYNLD----RIIEMNNNSPPLTFKRFQTIVSRLELPRRPLPPITQQQM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
D+ + IPSL +LG + VW +GGE++AL RL K
Sbjct: 176 DKCHTKIGDNHDQLYSIPSLEELGFRTAGLPPAVW----------RGGESQALDRLSKHL 225
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ + N S+Y + +SP+L GCLS R ++ L++ +
Sbjct: 226 DKKVWVTSLEHPRVNTCSLYAS--PTGLSPYLRFGCLSCRVLYYNLRELYMKV------- 276
Query: 415 DGESGSSGAGSNWLMFELLWRDFF 438
S S L +LLWR+FF
Sbjct: 277 --RKRCSPPLS--LFGQLLWREFF 296
>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
Length = 484
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 138/317 (43%), Gaps = 46/317 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR+ DN +L A V+ VY D D G +SG G R +L S+
Sbjct: 14 TLLWFRRDLRLADNPALTAAVRRGRPVVAVYILDDEDAGDWASG----GASR-WWLHHSL 68
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L+ RGS L++R G VL L GA+AVY +R ++ I+A+++
Sbjct: 69 ERLAESLRGRGSRLILRRGAAAAVLDRLISETGAEAVYWNRCYEPWATARDQAIKASLRL 128
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV----EIRKTIEALDQLKGLP 301
G EV+ F S L ++ K+G + F + ++ + ++ T + + L+ P
Sbjct: 129 RGHEVRSFNASLLREPWEIASKVGGPYRVFTPFWKALRAMGDPGDLLPTPDRIPTLEVAP 188
Query: 302 SRGDVEPGDI-PSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
+ D++ + PS D AA K GE A QRL+ F
Sbjct: 189 ASDDIDAWALTPSKPDWAFGLRAA--------------WKPGEAAARQRLEAF---LDGA 231
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
P+ K N G N + ++SP L G + PR + W+
Sbjct: 232 APEYAKRRN---FPGTNGTSRLSPHLHFGEIGPRQI----------------WHAASFHH 272
Query: 421 SGAGSNWLMFELLWRDF 437
+G ++ + E+ WR+F
Sbjct: 273 TGMATDQFLSEIAWREF 289
>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
Length = 490
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 138/315 (43%), Gaps = 29/315 (9%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+VWFR LR+HDN +L A ++ + P++ DP G + R FL+ES+
Sbjct: 4 SLVWFRKGLRLHDNPALLDAARDAARLYPLFIVDPWFVNPERVGVN-----RMRFLLESL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
++ NL+ GS L+V G+P+ VL + + R+ + +E I + +
Sbjct: 59 GEIDGNLRRLGSRLIVLQGRPQEVLERVLSRWQIGRLCFERDTEPYARRRDEAIRSMAER 118
Query: 246 EGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPSR 303
G+ V TLY D+L G++PT YG F R K E + + L P
Sbjct: 119 VGVRVISPTAHTLYDPDELIELGRGKVPTTYGAFGRLAAKLGEPDAPVASPSHLPP-PGE 177
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
D + G IP+L +LG S+ G P GGE E L+RL + ++ Q
Sbjct: 178 LDADYG-IPTLAELGYPDPECPSR---GIIPP-----GGEGEGLRRLHVYLSDRQRSAGF 228
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
D + + + + + L GCLS R+ + E++K E G
Sbjct: 229 AKPDTD-PTAFDPPSTTALGAHLKFGCLSARTFYAEVQKVYR-----------EVGEHTE 276
Query: 424 GSNWLMFELLWRDFF 438
L+ ++LWR+FF
Sbjct: 277 PPMSLIGQILWREFF 291
>gi|428774053|ref|YP_007165841.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
gi|428688332|gb|AFZ48192.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium stanieri
PCC 7202]
Length = 476
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 137/314 (43%), Gaps = 28/314 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ +C DP + D P R ++++ +
Sbjct: 6 LFWHRKDLRITDNLGLHEAYQNSKKIIGFFCLDPDILSR-----DDIAPARVTYMLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LRK Q RG +V P+ ++++LA + A+++Y +++V + ++ +K++
Sbjct: 61 ELRKKYQERGGTFLVFKDSPQNIILKLAHNLKANSIYWNKDVEPYSRNRDRELAKTLKEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
I FW ++ D+ K P T YG F + +E + L S +
Sbjct: 121 NINYHAFWDQLMHPPGDVLTKSNNTPYTVYGPFWRSWEKLE---KVAPFPAPSSLISLDE 177
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
E + L + L ++ + W G A GE AL+RL+ F ++ +
Sbjct: 178 NEQKIVDQLGAINLPKAENLGYEWQGDLILA----PGEKSALERLEYFCSDLLLY---YD 230
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
+ N +I G + +S L G ++PR+++ + +W + +S +
Sbjct: 231 DNRNFPAIDGTSL---LSAALKFGAIAPRTIWQK---------TVEEWENCQSDEARENI 278
Query: 426 NWLMFELLWRDFFR 439
EL WR+F++
Sbjct: 279 TAWRKELAWREFYQ 292
>gi|172058092|ref|YP_001814552.1| DASH family cryptochrome [Exiguobacterium sibiricum 255-15]
gi|171990613|gb|ACB61535.1| cryptochrome, DASH family [Exiguobacterium sibiricum 255-15]
Length = 400
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 135/322 (41%), Gaps = 61/322 (18%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A +VW+R DLRV D+E+L A E V V+ D G + +F E+
Sbjct: 2 AGVVWYRKDLRVDDHEALTRACEEEKIVRAVFV---------RQTADGRGKQQMTFEEET 52
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L ++L G +L + G+ L + D VY HR E + E++++
Sbjct: 53 LQSLNEHLVQLGIELTILQGETVEQLTSFIQP--EDVVYFHRMTGEYEARQEQEVQKRFN 110
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPSR 303
E + TL+ DD+ E+ + FR++V + + IEA
Sbjct: 111 TRMYETQ-----TLHLRDDIG--SDELKRVFTAFRKRVEQDGRFAEPIEA---------- 153
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKP-AANSMKGGETEALQRLKKFAAEYQAQPP 362
PG+I Q + Q G P A GGE RL A Y QP
Sbjct: 154 ----PGNI---------QYIELPQTRGGYDPRTAFPFIGGEAAGRNRL----AAYLEQPI 196
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K+ + + + S K+S WLA G LSPR + EL++T + E G++
Sbjct: 197 FTYKETRNG--FNVDDSSKLSAWLANGSLSPRRVMAELQRT-----------EQEHGANE 243
Query: 423 AGSNWLMFELLWRDFFRFITKK 444
+ + WL FELLWRDFF ++
Sbjct: 244 S-TYWLYFELLWRDFFHLTMRE 264
>gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
Length = 556
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 134/326 (41%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + SV VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSILGAHSVRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNINRLSYEYDSEPFGKERDAAIKKLANE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI------RKTIEALDQLK 298
G+EV TLY LD + G+ P Y F+ + +E T E +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVVTPAETITAEVMGPCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S E +PSL +LG S VW GGETEAL RL K
Sbjct: 180 TPLSDDHDEKFGVPSLEELGFDTEGLSSAVW----------PGGETEALTRLERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 278 KNSSPPLS-------LYGQLLWREFF 296
>gi|359456434|ref|ZP_09245595.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20495]
gi|358046549|dbj|GAA81844.1| cryptochrome DASH [Pseudoalteromonas sp. BSi20495]
Length = 436
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 134/318 (42%), Gaps = 44/318 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN L+ ++ V+ +P + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRIDDNPILSELATGQCALDIVFVINPHWFKNNNYQQKPYGVHKHQFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ L RG L V G+P ++L V + E + ++A ++
Sbjct: 66 ELQQTLIERGQTLHVLEGEPVSLLKARINEQNIHEVVYSEQFGLYEQRQINLLKAHCQN- 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
IE TL+ DLPF L E+P ++ FR+K + I T+ L +
Sbjct: 125 -IEFTGVLQDTLFKQSDLPFDLNELPKSFTPFRKKSEAANIPITLSMLPE---------- 173
Query: 307 EPGDIPSLLDLGLSQSAAMSQ----VWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
G +P + L ++ ++ + HGG +A + A + P
Sbjct: 174 --GLLPQPITLCAAKPIELTDDNNAIMHGGFKSAQA-------------HLAQYFSGLLP 218
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K + + G N + K S WLA GC+S R ++ +++ +
Sbjct: 219 STYKT-TRNELDGFNNTTKFSTWLAFGCVSARQVYKAVEEYE------------HKHIAN 265
Query: 423 AGSNWLMFELLWRDFFRF 440
+ W+ FELLWR++F++
Sbjct: 266 ESTYWIKFELLWREYFKW 283
>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
Length = 623
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 134/326 (41%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + +V VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIQGAHTVRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWNITRLSYEYDSEPFGKERDAAIKKLANE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEALDQLK 298
G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 120 AGVEVIVRISHTLYDLDKIIELNGGQSPLTYKRFQTLISRMEAVETPAETITAEVMGTCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S E +PSL +LG S VW GGETEAL RL K
Sbjct: 180 TPVSDDHDEKFGVPSLEELGFDTEGLSSAVW----------PGGETEALTRLERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ N + S G +SP+L GCLS + + +L T + K
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCQLFYFKL----TDLYRKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 278 KNSSPPLS-------LYGQLLWREFF 296
>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
Length = 579
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 145/336 (43%), Gaps = 60/336 (17%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
A+ +I FR LR+HDN SL A S ++ PVY D R + + G G R F
Sbjct: 21 AMSHRTIHLFRKGLRLHDNPSLLGALASSSTLYPVYVLD-RVFLQ---GAMHMGALRWRF 76
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L++S+ DL L+A GS L V G +L EL G + EV + ++ I+
Sbjct: 77 LLQSLEDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQ 136
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGV---EIRKTIEALDQ 296
++ G++ TLY + + G P Y F + + E +++
Sbjct: 137 TVAQENGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIED 196
Query: 297 LKGLPSRGDVE-PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
+ + DV+ +PSL DLGL A + +W GGE+ ALQRL+K
Sbjct: 197 FQRCVTPVDVDRVYAVPSLADLGLQVEAEV--LW----------PGGESHALQRLEK--- 241
Query: 356 EYQAQPPKGNKDGNHDSIYGANFS-------------CKISPWLAMGCLSPRSMFDELKK 402
+Q+Q + ANFS +SP+L++GCLS R+ + L
Sbjct: 242 HFQSQG------------WVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLN- 288
Query: 403 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
SI A SK N S G ++LWR+FF
Sbjct: 289 ---SIYAQSK-NHSLPPVSLQG------QVLWREFF 314
>gi|383322123|ref|YP_005382976.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325292|ref|YP_005386145.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491176|ref|YP_005408852.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436443|ref|YP_005651167.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|339273475|dbj|BAK49962.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|359271442|dbj|BAL28961.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274612|dbj|BAL32130.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277782|dbj|BAL35299.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803 substr.
PCC-P]
Length = 479
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 142/322 (44%), Gaps = 45/322 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR++D+ +L A ++ ++ V+C D + + P R ++L+ +
Sbjct: 11 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQA-----EDMAPARVAYLLGCLQ 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ + Q GS+L+V P +L +LA +GA V + K + + A+++
Sbjct: 66 SLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRER 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL-PSRGD 305
G+ + W ++H ++ + G T Y F + + + L+GL P+ +
Sbjct: 126 GLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKDLQGLTPAEKE 185
Query: 306 ----VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA----EY 357
+EP IP L DLG +W P + GE A QRL F A EY
Sbjct: 186 KLAPLEPLAIPQLADLGF--------IWDQPLP----LTPGEEAAEQRLDWFVAHGLEEY 233
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
Q ++ N ++ G + ++S L G +SPR+++ T++ A W
Sbjct: 234 Q-------QNRNFPALDG---TSQLSAALKFGVISPRTLWQ------TTLEA---WEQSR 274
Query: 418 SGSSGAGSNWLMFELLWRDFFR 439
S + A EL WR+F++
Sbjct: 275 SEEARASIETWQQELAWREFYQ 296
>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
Length = 533
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 142/339 (41%), Gaps = 59/339 (17%)
Query: 123 RRASIV-WFRNDLRVHDNESLN------TANNESVSVLPVYCFDPRDYGKSSSGFDKTGP 175
+ A++V WFR LRVHDN +L A E V P++ DP + + G
Sbjct: 4 KHATLVHWFRKGLRVHDNPALTQIFSAANAAPEKFHVRPIFILDP-----GILDWMQVGA 58
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL + L+ S L V GKP V + K+ + + ++ ++
Sbjct: 59 NRWRFLQQTLHDLDQQLRKLNSRLFVVRGKPVDVFPRVFKSWRVELLTFETDIEPYALQR 118
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EGI+V T+Y+ + + K +G+ P Y F V +++ K +E
Sbjct: 119 DAAVQKLAKAEGIKVDTHCSHTIYNPELVIAKNMGKAPITYQKFLSVVDQLKVPKVLELP 178
Query: 295 DQL--KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
++L K LP + +VE D + L Q + N GGETE L+R+
Sbjct: 179 EKLAKKALPPKDEVEQQDDNAYDCPTLEQLVKRPE-----DLGPNKFPGGETEGLRRM-- 231
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDE 399
K+ D ++ A F + +SP+L GCLS R +
Sbjct: 232 -------------KESLRDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFHQQ 278
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
LK S S + S G +LLWR+F+
Sbjct: 279 LKAILKRQSKHS-----QPPVSLIG------QLLWREFY 306
>gi|260431373|ref|ZP_05785344.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415201|gb|EEX08460.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 541
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 125/283 (44%), Gaps = 57/283 (20%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWF+ DLRV D+ +L A+ E VLP+Y +P + + + + +F+ E++
Sbjct: 39 QVVWFKRDLRVSDHPALAQAS-EVGPVLPLYVVEPELWQQPDASARQW-----NFVAETI 92
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHD-EVKSEEKIEAAMK 244
++LR +L G L+VRVG+ E VL EL D +++H E +D + + ++ A +
Sbjct: 93 AELRSDLGELGQPLIVRVGEIEAVLSELLNRGLIDVLWSHEETGNDWTYQRDRQVAAWCR 152
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK-TIEALDQLKGLPSR 303
D G+ + N+G FR G++ R E D+ LP
Sbjct: 153 DHGVRWREV-------------------QNHGVFR----GLKCRDGWAERWDRFMALPVS 189
Query: 304 G-------DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
D EPG IP+ DLGL + G+ A GG L RL F
Sbjct: 190 SPVALKHIDTEPGYIPTGRDLGLRDDQCV------GRQA-----GGRAAGLDRLNSFLTR 238
Query: 357 YQAQPPKGNKDGNHDS--IYGANFSCKISPWLAMGCLSPRSMF 397
+G + S + GA ++SP+LA G LS R ++
Sbjct: 239 ------RGERYQREMSSPLEGAVACSRLSPYLAWGALSMREVW 275
>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
Length = 961
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 136/336 (40%), Gaps = 36/336 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN +L + + V+ DP G S+ G +K +R FL++
Sbjct: 4 KHTVHWFRKGLRLHDNPALREGLRGARTFRCVFIIDPWFAGSSNVGINK---WR--FLLQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +NL+ S L V G+P L +L K G + + + I
Sbjct: 59 CLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
K+ GIEV TLY+L+ + K G P Y F+ + ++ EA L + +
Sbjct: 119 KELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGN 178
Query: 303 RGDVEPGD------IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
+ D +P+L +LG A VW GGETEAL RL++
Sbjct: 179 ANTPQYDDHDDKYGVPTLEELGFETEALRPPVW----------IGGETEALARLERHLER 228
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
G S+ + +SP+L GCLS R + +L I A
Sbjct: 229 KAWVASFGRPKMTPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKACP---- 282
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVV 452
L +LLWR+FF K + K+
Sbjct: 283 --------PLSLHGQLLWREFFYCAATKNPTFDKMA 310
>gi|407958302|dbj|BAM51542.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 482
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 142/322 (44%), Gaps = 45/322 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR++D+ +L A ++ ++ V+C D + + P R ++L+ +
Sbjct: 14 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQA-----EDMAPARVAYLLGCLQ 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ + Q GS+L+V P +L +LA +GA V + K + + A+++
Sbjct: 69 SLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRER 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL-PSRGD 305
G+ + W ++H ++ + G T Y F + + + L+GL P+ +
Sbjct: 129 GLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKDLQGLTPAEKE 188
Query: 306 ----VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA----EY 357
+EP IP L DLG +W P + GE A QRL F A EY
Sbjct: 189 KLAPLEPLAIPQLADLGF--------IWDQPLP----LTPGEEAAEQRLDWFVAHGLEEY 236
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
Q ++ N ++ G + ++S L G +SPR+++ T++ A W
Sbjct: 237 Q-------QNRNFPALDG---TSQLSAALKFGVISPRTLWQ------TTLEA---WEQSR 277
Query: 418 SGSSGAGSNWLMFELLWRDFFR 439
S + A EL WR+F++
Sbjct: 278 SEEARASIETWQQELAWREFYQ 299
>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
Length = 474
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 144/317 (45%), Gaps = 38/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYHQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLL-HAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPKTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ E ++P+L +LG + W P + GE A RL++F Q
Sbjct: 179 EKLTETINLPTLENLGFT--------WQNPLP----LTPGEKAAHSRLEEFC---QGVIN 223
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+D N + G + ++S L G + R+++ + + A +
Sbjct: 224 NYQEDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCCAQE--------AKD 272
Query: 423 AGSNWLMFELLWRDFFR 439
+ W EL WR+F++
Sbjct: 273 SIITWQQ-ELAWREFYQ 288
>gi|16330382|ref|NP_441110.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|451814540|ref|YP_007450992.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|2499552|sp|Q55081.1|PHR_SYNY3 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|1652872|dbj|BAA17790.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
gi|1771978|gb|AAB81109.1| DNA photolyase [Synechocystis sp. PCC 6803]
gi|451780509|gb|AGF51478.1| deoxyribopyrimidine photolyase [Synechocystis sp. PCC 6803]
Length = 488
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 142/322 (44%), Gaps = 45/322 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR++D+ +L A ++ ++ V+C D + + P R ++L+ +
Sbjct: 20 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQA-----EDMAPARVAYLLGCLQ 74
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ + Q GS+L+V P +L +LA +GA V + K + + A+++
Sbjct: 75 SLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRER 134
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL-PSRGD 305
G+ + W ++H ++ + G T Y F + + + L+GL P+ +
Sbjct: 135 GLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKDLQGLTPAEKE 194
Query: 306 ----VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA----EY 357
+EP IP L DLG +W P + GE A QRL F A EY
Sbjct: 195 KLAPLEPLAIPQLADLGF--------IWDQPLP----LTPGEEAAEQRLDWFVAHGLEEY 242
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
Q ++ N ++ G + ++S L G +SPR+++ T++ A W
Sbjct: 243 Q-------QNRNFPALDG---TSQLSAALKFGVISPRTLWQ------TTLEA---WEQSR 283
Query: 418 SGSSGAGSNWLMFELLWRDFFR 439
S + A EL WR+F++
Sbjct: 284 SEEARASIETWQQELAWREFYQ 305
>gi|392310270|ref|ZP_10272804.1| deoxyribodipyrimidine photolyase single-strand-specific
[Pseudoalteromonas citrea NCIMB 1889]
Length = 449
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 144/330 (43%), Gaps = 38/330 (11%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS-- 179
++R + F D RV DN++L + +++ +YC P+ + F +T A
Sbjct: 1 MKRIGLYLFTQDCRVQDNDALYLLASSVDTLICLYCVAPQT--RYDKQFSQTTASEAQKG 58
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
+L ++ L+ +L G L V G V+ + V + V+++E + +
Sbjct: 59 YLKSTLQGLQNSLAQLGQTLNVEYGDRRGVIADYISRFEITHVASSIPVAYNESHMWQWL 118
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLK 298
++ + S +Y+ LPF L E+P ++ FR+ + + + +T +
Sbjct: 119 KSTFSHVNFQTAN--NSQIYYRTQLPFDLAELPKSFSSFRKFIERDAQCERT-------E 169
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
+P R P L+ L + +Q N GGE A + L+ + +
Sbjct: 170 TIPQRPCFHLPPPPCLMQFKLPKYLINTQ--------NNDYYGGEENAQKHLRGY---FN 218
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ G K ++++G +FS SP+LA G LSP+ + L + + +
Sbjct: 219 SDAASGYKQ-TRNALHGNHFSTLFSPYLAHGALSPQQVLRALNEY-----------ENQH 266
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
GS+ + + W+ FELLWR++F + ++ + SA
Sbjct: 267 GSNES-TYWIYFELLWREYFHWYSQLHQSA 295
>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
Length = 730
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 141/345 (40%), Gaps = 40/345 (11%)
Query: 105 PLSLGPHRPLDPNNGAAIRRA----SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDP 160
P S H P P + +A RR ++ WFR LR+HDN +L ++V+ V+ DP
Sbjct: 10 PPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDP 69
Query: 161 RDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD 220
S+ G +K FL++ + DL K+L+ S L V G+P L +L + G
Sbjct: 70 WFASSSNVGINK-----WRFLLQCLEDLDKSLKKLNSRLFVVRGQPADALPKLFREWGTT 124
Query: 221 AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFR 279
A+ + + I + ++ GI V TLY LD + + G+ P Y F+
Sbjct: 125 ALTFEEDPEPYGRVRDHNIISKCREVGITVTSRVSHTLYKLDKIIERNGGKAPLTYHQFQ 184
Query: 280 EKVKGV------EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGK 333
+ + E+ T + L+ + + +P+L +LG +W
Sbjct: 185 ALIASMPPPPPAEVTITPQMLNGATTPITDNHDDRFGVPTLEELGFETEGLKPPIW---- 240
Query: 334 PAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSP 393
GGE+EAL RL++ G S+ + +SP+L GCLS
Sbjct: 241 ------IGGESEALARLERHLERKAWVASFGRPKMTPQSLLAS--QTGLSPYLRFGCLST 292
Query: 394 RSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
R + +L + + S G ++LWR+FF
Sbjct: 293 RLFYYQLTELYKRVKRV------RPPLSLHG------QILWREFF 325
>gi|119945273|ref|YP_942953.1| DNA photolyase FAD-binding subunit [Psychromonas ingrahamii 37]
gi|119863877|gb|ABM03354.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Psychromonas ingrahamii 37]
Length = 448
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 148/331 (44%), Gaps = 49/331 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ W DLR++DN +LN A+ +S +L VY D + + ++ G R FL
Sbjct: 2 KRTLYWVNKDLRINDNAALNLAS-KSDRLLCVYVVDKQSFEANNFQSKPLGDIRWQFLQG 60
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ D ++L G + + G + L+ L ++ V + E + ++ +
Sbjct: 61 CLEDFNESLSKLGQAMHIVYGDTLSTLMRLCESYQITDVITTKLPGTYENRLITQLNERL 120
Query: 244 KDEGI-EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL----K 298
+ I +V F TL+ LPF+L E+P +Y FR+K+ V I + + + L
Sbjct: 121 PELTIDQVDQF---TLFTKKSLPFELDELPISYSKFRKKMAEVIIPEPVSTVQSLPSMFD 177
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA---- 354
LP+ +P +P++ + Q +GGE + L+ L+++
Sbjct: 178 TLPAPTRFKPEWLPTVSAIKAKQGF--------------EFEGGEQQGLKHLRQYFSSNS 223
Query: 355 -AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
AEY+ + N DG + S K+SPWL GC+S R + + L A +
Sbjct: 224 PAEYKQ--VRNNLDGWKN-------SSKLSPWLNSGCISVRQVMNNL--------AEFEQ 266
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKK 444
G++ S+ L ELLWR++++++ K
Sbjct: 267 QHGKNSSTEC----LYLELLWREYYQWVHYK 293
>gi|453328412|dbj|GAC89303.1| deoxyribodipyrimidine photolyase [Gluconobacter thailandicus NBRC
3255]
Length = 483
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/314 (24%), Positives = 131/314 (41%), Gaps = 33/314 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR DLR D+ +L A ++ VY D + G +L ++S
Sbjct: 14 IVWFREDLRFSDHPALQAATATGHPLICVYVLD-----DETPALHALGGASRWWLHGALS 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR L L+ G E ++ +LAK A VY H + E + +E+I +A+ +
Sbjct: 69 DLRSTLSRHHGTLLTLKGSAEKLIPQLAKETDAQGVYWHHRLHQKEREQDEQIASALDKQ 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+ + WG+ L + K G + F + + ++ ++ L P
Sbjct: 129 GVSSEASWGTVLLDPKQVQTKEGRFYQVFTAFWKAFQSQDVPVPLDPPAHLSFHPL---- 184
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
P D+ S L + W G A + + GE EA + L+ F A+ KG
Sbjct: 185 -PDDLLSKYRLDETTLLPTHPDWAAGLRA--TWEPGEREAHEHLEDFLRHDCARYGKGRD 241
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
+ G + ++SP+LA G +SPR +++ ++K G+ G+
Sbjct: 242 E------MGREGTSRLSPYLASGAISPRQVWEAIQK---------------KGAHDEGAR 280
Query: 427 WLMFELLWRDFFRF 440
+ E+ WR+F ++
Sbjct: 281 IFLSEIGWREFAKY 294
>gi|425456019|ref|ZP_18835730.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
gi|389802953|emb|CCI18036.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
Length = 474
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 145/317 (45%), Gaps = 38/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + L+ L+GL + G
Sbjct: 121 GIEVETFW-DQLLHAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPTTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ E ++P+L +LG + W P + GE A RL++F Q
Sbjct: 179 EKLTETINLPTLENLGFT--------WQNPLP----LTPGEKAANSRLEEFC---QGVIN 223
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+D N ++ G + ++S L G + R+++ + + A +
Sbjct: 224 NYQEDRNFPAVDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAQE--------AKD 272
Query: 423 AGSNWLMFELLWRDFFR 439
+ W EL WR+F++
Sbjct: 273 SIITWQQ-ELAWREFYQ 288
>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 140/329 (42%), Gaps = 41/329 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFLI 182
+VWFR LRVHDN +L+ A + V PV+ DPR D S G G R FL+
Sbjct: 16 LVWFRKGLRVHDNPALDAARRSAARVYPVFVLDPRYLRPDPAAPSPGSAHAGVARVRFLL 75
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
ES+ DL L+ GS L+V + + + K + + + ++++
Sbjct: 76 ESLLDLDARLRCLGSRLLVLRARDDVSDAVCAALKDWNIGKLCFESDTEPYALARDKRVT 135
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
GIEV TL+ ++ K G P Y F G + +E L
Sbjct: 136 DFAAASGIEVFSPVSHTLFDPAEIIEKNGGRPPLTYQSF-VATAGEPPKPVMEEYSVLPP 194
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KKF 353
+ G E +P L +LG +SQ + +GGETEAL+R+ K++
Sbjct: 195 IGDTGGYELLPVPKLEELGYGD---LSQEY------IPPFRGGETEALKRMRESLQDKEW 245
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
A+++ PKG+ S + + +SP+L GCLS R + ++ S +K
Sbjct: 246 VAKFEK--PKGDP-----SAFVKPATTVLSPYLKFGCLSVRYFYHCIQDVYRSAKTHTK- 297
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFIT 442
S AG +LLWRDFF ++
Sbjct: 298 ----PPVSLAG------QLLWRDFFYTVS 316
>gi|347971574|ref|XP_313179.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|347971576|ref|XP_003436763.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|347971578|ref|XP_003436764.1| AGAP004261-PC [Anopheles gambiae str. PEST]
gi|333468729|gb|EAA44753.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|333468730|gb|EGK97037.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|333468731|gb|EGK97038.1| AGAP004261-PC [Anopheles gambiae str. PEST]
Length = 1056
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 136/336 (40%), Gaps = 36/336 (10%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN +L + + V+ DP G S+ G +K +R FL++
Sbjct: 99 KHTVHWFRKGLRLHDNPALREGLRGARTFRCVFIIDPWFAGSSNVGINK---WR--FLLQ 153
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +NL+ S L V G+P L +L K G + + + I
Sbjct: 154 CLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMC 213
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
K+ GIEV TLY+L+ + K G P Y F+ + ++ EA L + +
Sbjct: 214 KELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPEAAITLDVIGN 273
Query: 303 RGDVEPGD------IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
+ D +P+L +LG A VW GGETEAL RL++
Sbjct: 274 ANTPQYDDHDDKYGVPTLEELGFETEALRPPVW----------IGGETEALARLERHLER 323
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
G S+ + +SP+L GCLS R + +L I A
Sbjct: 324 KAWVASFGRPKMTPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKACP---- 377
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVV 452
L +LLWR+FF K + K+
Sbjct: 378 --------PLSLHGQLLWREFFYCAATKNPTFDKMA 405
>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
Length = 553
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 128/322 (39%), Gaps = 36/322 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ + WFR LR+HDN SL + ++ DP G S+ +K FL+E
Sbjct: 11 KQVVHWFRKGLRLHDNPSLKDGLKGCSTYRCIFILDPWFAGSSNVDINK-----WRFLLE 65
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ DL +NL+ S L V G+P VL +L K + + ++ I
Sbjct: 66 SLEDLDQNLRKLNSRLFVIRGQPAGVLPKLFKEWETTCLTFEEDPEPFGRVRDQNIITMC 125
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV------EIRKTIEALDQ 296
KD IEV TLYH + K G+ P Y F+ + V E T E++ +
Sbjct: 126 KDFNIEVITRASHTLYHPQKIIEKNGGKAPLTYRQFQNIIASVDAPPPPESDITFESIGR 185
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
+ +P+L +LG M VWH GGETEAL RL++
Sbjct: 186 GYTPMDESMDDRFSVPTLEELGFDTDGLMPAVWH----------GGETEALTRLERHLER 235
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
G S+ + +SP+L GCLS R +L I A
Sbjct: 236 KAWVASFGRPKMTPQSLLAS--QTGLSPYLRFGCLSVRLFHQQLTNLYKKIKKA------ 287
Query: 417 ESGSSGAGSNWLMFELLWRDFF 438
+ S G ++LWR+FF
Sbjct: 288 QPPLSLHG------QVLWREFF 303
>gi|260436423|ref|ZP_05790393.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
gi|260414297|gb|EEX07593.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. WH 8109]
Length = 477
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 138/322 (42%), Gaps = 42/322 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + S +V VY DP+ + P R FLIES+
Sbjct: 7 LFWHRRDLRLADNLGLVAATDISPAVTGVYVLDPQLINPTEH-LPPMAPARLWFLIESLV 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ + GS L+V G P VL +LA+ IGA+AV R+V + + ++ ++ +
Sbjct: 66 ELQQRWREAGSRLLVVKGDPVAVLPQLAQQIGAEAVVWSRDVEPYARERDRQVAKKLQAD 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G +V W L + L G+ YG F +G + K + GL D+
Sbjct: 126 GRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVLAKQPSTVAAPTGLV---DL 182
Query: 307 EPGDIPSLLDL-GLSQSAAMSQVWHGGKPAANS-MKGGETEALQRLKKFA-AEYQAQPPK 363
+P +P+L L L +S HG K A + GE AL +L F A P
Sbjct: 183 DPAQLPALESLEALRES-------HGFKGAEICPCRPGEAAALAQLNSFCDGPLLAYEPD 235
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF------DELKKTATSISAASKWNDGE 417
N G + Y +S L++G LSPR + E ++ + A + W
Sbjct: 236 RNFPGTAGTSY-------LSAALSVGTLSPRQAWCAAQDSREQARSEEHLQAIAVWEQ-- 286
Query: 418 SGSSGAGSNWLMFELLWRDFFR 439
EL WR+F++
Sbjct: 287 -------------ELGWREFYQ 295
>gi|384252420|gb|EIE25896.1| cryptochrome [Coccomyxa subellipsoidea C-169]
Length = 524
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 158/382 (41%), Gaps = 102/382 (26%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANN--ESVSVLPVYCF-----DPRDYGKSSSGFDKTG 174
I++A+IVW R+D+R+ D+ L +A + ++ VLPVYC PR +G G
Sbjct: 6 IKKAAIVWIRSDIRLADHAPLVSACSLPQTCFVLPVYCLSPALLQPRCNIPGLNGIPVLG 65
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA----VYAHREVSH 230
P+R FL+E++ L++ L ARGS L V +P + L + + +Y + ++
Sbjct: 66 PHRGRFLLEALQALQQQLAARGSKLHFAVSRPAEEIPALVRGLAGQVSHVDLYHYLQIGR 125
Query: 231 DEVKSEEKI----EAAMKDEGI--EVKYFWGSTLYHLDDLPFKL--------GEMPTNYG 276
V+ E+ + AA K+ + EV +FWG TLYH + L ++
Sbjct: 126 HSVEEEDAVADAFHAACKESQLTSEVHHFWGHTLYHPHNALAALKPPARDSNSQLAVESH 185
Query: 277 GFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAA 336
GF +R+ + A DQ+ P IPS L P
Sbjct: 186 GF--------VREPLPAPDQIPPFPD-------SIPSAAPL----------------PKK 214
Query: 337 NSMKGGETEALQRLKKFAAEYQAQPPK--------GNKDGNH------DSIY-------G 375
S + +A+ L + + P + G DGN DS G
Sbjct: 215 ASTDRTDADAIAALPSISVAQEGMPGEASVSRNDSGAADGNLSAPAPIDSFKDTRMLAGG 274
Query: 376 ANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFEL--- 432
+ S K+S +LA GCLSPR ++ E++K A + G+SG S WL+ L
Sbjct: 275 VDNSAKLSAYLAAGCLSPRMVYAEIQK-------ARNQSGGDSGHS-----WLIMHLIIR 322
Query: 433 ----------LWRDFFRFITKK 444
L RDFF F K
Sbjct: 323 QAPPLQASISLPRDFFLFTALK 344
>gi|428201469|ref|YP_007080058.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
gi|427978901|gb|AFY76501.1| deoxyribodipyrimidine photolyase [Pleurocapsa sp. PCC 7327]
Length = 477
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 145/325 (44%), Gaps = 51/325 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S V+ V+C D R+ K D P R +++I +
Sbjct: 6 LFWHRRDLRISDNIGLAAARQKSSRVVGVFCLD-RNLLKR----DDIAPARITYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ GS L++ G P + LA+A+ AV+ + ++ + +EK++ A+K++
Sbjct: 61 ELQQKYLQLGSQLLIVQGDPNQAITALAEALKVQAVFFNLDIEPYAKQRDEKVKEALKEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR--- 303
GI V+ FW L + + G + T Y F + + L+ +KGL +
Sbjct: 121 GIAVETFWDQLLEAPGKIVTQSGNLYTVYSPFWRNWSQQSKQSPAQDLENVKGLTDQEIA 180
Query: 304 -----GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA---- 354
G +E +P+ DLG +W P + GET A +RL +F
Sbjct: 181 IAKKAGTIE---LPTAKDLGF--------IWDN--PLL--LAPGETAAQERLAEFCDRAI 225
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
EY+ Q N +I G + ++S L G + R+++ AT + + +
Sbjct: 226 YEYKEQR-------NFPAIDG---TSRLSAALKFGAIGIRTVWQ-----ATIEAGENSRS 270
Query: 415 DGESGSSGAGSNWLMFELLWRDFFR 439
D S S A EL WR+F++
Sbjct: 271 DEASDSIQAWQQ----ELAWREFYQ 291
>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
Length = 558
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 143/331 (43%), Gaps = 60/331 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I FR LR+HDN SL A S ++ PVY D R + + G G R FL++S+
Sbjct: 5 TIHLFRKGLRLHDNPSLLGALASSSTLYPVYVLD-RVFLQ---GAMHMGALRWRFLLQSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL L+A GS L V G +L EL G + EV + ++ I+ ++
Sbjct: 61 EDLDTRLRAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQE 120
Query: 246 EGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGV---EIRKTIEALDQLKGLP 301
G++ TLY + + G P Y F + + E +++ +
Sbjct: 121 NGLQTYTCISHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQRCV 180
Query: 302 SRGDVE-PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
+ DV+ +PSL DLGL A + +W GGE+ ALQRL+K +Q+Q
Sbjct: 181 TPVDVDRVYAVPSLADLGLQVEAEV--LW----------PGGESHALQRLEK---HFQSQ 225
Query: 361 PPKGNKDGNHDSIYGANFS-------------CKISPWLAMGCLSPRSMFDELKKTATSI 407
+ ANFS +SP+L++GCLS R+ + L SI
Sbjct: 226 G------------WVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLN----SI 269
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
A SK N S G ++LWR+FF
Sbjct: 270 YAQSK-NHSLPPVSLQG------QVLWREFF 293
>gi|75910490|ref|YP_324786.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
gi|75704215|gb|ABA23891.1| deoxyribodipyrimidine photo-lyase type I [Anabaena variabilis ATCC
29413]
Length = 479
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 141/325 (43%), Gaps = 50/325 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L TA S V+ V+C DP + D P R +++I S+
Sbjct: 6 LFWHRRDLRITDNIGLATARQHSSKVVGVFCLDPNILER-----DDVAPVRVTYMIGSLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ GS L++ G P + LA+A+ A AV+ + +V + I A +KD+
Sbjct: 61 ELQQRYVQAGSQLLILRGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDK 120
Query: 247 GIE-VKYFWGSTLYHLDDLPFKLGEMPTNYGGF------REKVKGVEIRKTIEALDQL-K 298
GI+ + + W L+ D++ T Y F + K K VE +E L + +
Sbjct: 121 GIQCLTHNWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLHNVEGLTEAEQ 180
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA--- 355
L + V+ +P+ DLG A + + GE A +L +F A
Sbjct: 181 ELAQKAGVKA--LPTAKDLGFFWDADL------------IIAPGEAAAQAKLAEFTAKAI 226
Query: 356 -EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
EYQ Q + G N + ++S L G + R+++ T++ A N
Sbjct: 227 TEYQEQ----------RNFPGVNGTSQLSAALKFGVIGIRTVWQ------TTLEALE--N 268
Query: 415 DGESGSSGAGSNWLMFELLWRDFFR 439
++ + W EL WR+F++
Sbjct: 269 SRSEETTTSIRTWQQ-ELAWREFYQ 292
>gi|393764280|ref|ZP_10352892.1| deoxyribodipyrimidine photolyase [Alishewanella agri BL06]
gi|392604910|gb|EIW87809.1| deoxyribodipyrimidine photolyase [Alishewanella agri BL06]
Length = 452
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 152/325 (46%), Gaps = 38/325 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+V LRV DN L+ A ++ +++ + D + Y G ++ R ++++
Sbjct: 3 SLVLLNGCLRVDDNPLLSQARGKAAALVII---DQQAYFGRQYGLFRSNLLRLRAHLQAI 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L + L R L++R G + L ELA +GA+ + A + DE ++ + + A++K
Sbjct: 60 QHLAQQLAQRQIGLIIRFGDTHSQLCELALKLGAEQLLASEPTAPDEYRALQHLPASVKL 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ I+ G++L P L + + FR+K++ + + E + +
Sbjct: 120 QLID-----GNSLLSQQLRP-DLATLSDRFTSFRKKLEPLLLVTAAEP----EHTRAANW 169
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGG---ETEALQRLKKFAAEYQAQPP 362
+ P + GLSQ + + Q W G+ AA S + G E A RL F +Q Q
Sbjct: 170 LSPDQVA-----GLSQQSVLQQ-WL-GQTAATSWREGCWDEGSAHARLHYFI--WQGQHI 220
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
KD + +++ G +++ S L++G LS R + ++++ + A ND
Sbjct: 221 LHYKD-SRNALCGTDYASFFSTPLSLGTLSVRRCWQQIEQFEQQVKA----ND------- 268
Query: 423 AGSNWLMFELLWRDFFRFITKKYSS 447
+ WL FELLWR+FFR+ +KY +
Sbjct: 269 -STYWLKFELLWREFFRWQMRKYQA 292
>gi|374851431|dbj|BAL54391.1| deoxyribodipyrimidine photo-lyase [uncultured gamma
proteobacterium]
Length = 491
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 141/330 (42%), Gaps = 73/330 (22%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A++VWFR DLR+ DN +L A V+PVY P + G +L +S
Sbjct: 6 AALVWFRRDLRLTDNPALIAALTSHADVVPVYLHAPEEEAPWQPGAASRW-----WLHQS 60
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+S L ++L+ RGS L++R+G L+ L + GA AVY +R V + + +I A++
Sbjct: 61 LSQLEQSLRERGSRLIIRLGPTLESLLALCQETGAAAVYWNRLVDPAVRRRDAQIVRALE 120
Query: 245 DEGIEVKYFWGSTLYH------LDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
GI F G L+ D PF+ + F LK
Sbjct: 121 SCGIRPLVFEGGLLFDPARLKTSQDRPFR------RFTPFYRACL-------------LK 161
Query: 299 GLPSRGDVEPGD------IPSLLDLGLSQSAAMSQV-WHGGKPAANSMKGGETEALQRLK 351
GLP+ DV+P P + + L+ M ++ W+ G A + + GE AL RL+
Sbjct: 162 GLPT--DVQPAPPRLPKVPPGIATVPLAALELMPRIGWYRG--LAQTWRPGEAGALARLE 217
Query: 352 KF----AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
F AEY + + + + ++SP L G +SP K+ A SI
Sbjct: 218 AFRSGPLAEYASLRDRPDLPA----------TSRLSPHLHFGEISP-------KQVAASI 260
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDF 437
A SG SG + EL+WR+F
Sbjct: 261 LA--------SGHSGEA---FLRELIWREF 279
>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
Length = 377
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 141/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN +L S ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AIHWFRKGLRLHDNPALKECIQGSDTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWKISRLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ +EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LASEAAVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 GKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASTTG------LSPYLRFGCLSCCLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KMVKKNSSPPLS-------LYGQLLWREFF 296
>gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas protegens Pf-5]
gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas protegens Pf-5]
Length = 481
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 153/348 (43%), Gaps = 61/348 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A +V VY P + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAAQRGAAVA-VYLLSPEQWLAHDD-----APCKIDFWLRNLQ 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L L L++R + VL+EL + + ++ ++E E + + + A
Sbjct: 57 SLSTALGRLNIPLLIRSAATWEQAPQVLLELCRQLQVQMLHFNQEYGIHESRRDAAVTRA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALDQ 296
++ GI V+ HLD L F+ G + T GG+ + KV + + AL +
Sbjct: 117 LQHAGISVQ-------GHLDQLLFQPGSVLTKSGGYFQVFSQFRKVCYSRLHTALPALVK 169
Query: 297 LKG--LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
G LP + +P +P ++ S + A+ ++W PA G+ EA +RL+KF+
Sbjct: 170 APGAQLPLSINADP--LPQRVEGFPSPTQALRELW----PA------GDDEAQRRLEKFS 217
Query: 355 AE----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
E YQ++ K G + ++SP+LA G +SPR + AA
Sbjct: 218 DEQIHYYQSERDFPAKPG----------TSQLSPYLAAGVISPRQ----------CLHAA 257
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPAT 458
+ N GE S G+ + ELLWR+F++ I Y + P T
Sbjct: 258 LRGNQGEFESGSPGAVTWINELLWREFYKHILVGYPRVSRHRAFRPET 305
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S ++ ++C DP+ + P R ++L +
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSAD-----MAPARVAYLQGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS L++ G P+ ++ +LA+ + A+AVY ++++ + ++ AA+K
Sbjct: 61 ELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI W L+ D + G + YG F + + + +L D+
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELV------DL 174
Query: 307 EPGDIPSLLDLGLSQSAAMSQV---WHGGKPAANSMKGGETEALQRLKKFA 354
P + ++ L LS+ + Q+ W GG P ++ GET A+ RL++F
Sbjct: 175 SPEQLTAIAPLLLSELPTLKQLGFDWDGGFP----VEPGETAAIARLQEFC 221
>gi|421506155|ref|ZP_15953086.1| deoxyribodipyrimidine photolyase [Pseudomonas mendocina DLHK]
gi|400343105|gb|EJO91484.1| deoxyribodipyrimidine photolyase [Pseudomonas mendocina DLHK]
Length = 477
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 144/334 (43%), Gaps = 49/334 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR+DLR+ DN +LN A + S + +Y P + + P + F + +++
Sbjct: 4 LMWFRSDLRIDDNTALNQAMSRG-STIALYLVTPGQWQRHDD-----APCKVDFWLRNLA 57
Query: 187 DLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L + L A L++R + V+ E+ AV+A+ E +E + + A
Sbjct: 58 QLSRALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINENLRDRCVAAY 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ + I W S HLD L FK G + T GG+ + + + V AL L
Sbjct: 118 LAQQDIA----WHS---HLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPGLVA 170
Query: 300 LPSRGDVEP---GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P P IP +D S + +W PA GE A QRL++FA E
Sbjct: 171 RPVAQAPTPLASDAIPHAVDGFAMPSEQLRSLW----PA------GEEAARQRLERFADE 220
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K +D ++ G + ++SP+LA G LSPR + AA N G
Sbjct: 221 -QIGYYKDERD--FPALPG---TSQLSPYLAAGVLSPRQ----------CLHAALAANRG 264
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
E S AG + ELLWR+F++ I Y +
Sbjct: 265 EFDSGNAGVVTWVNELLWREFYKHILVGYPRVSR 298
>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
gi|118595452|sp|P05327.4|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
Length = 484
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S ++ ++C DP+ + P R ++L +
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSAD-----MAPARVAYLQGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS L++ G P+ ++ +LA+ + A+AVY ++++ + ++ AA+K
Sbjct: 61 ELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI W L+ D + G + YG F + + + +L D+
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELV------DL 174
Query: 307 EPGDIPSLLDLGLSQSAAMSQV---WHGGKPAANSMKGGETEALQRLKKFA 354
P + ++ L LS+ + Q+ W GG P ++ GET A+ RL++F
Sbjct: 175 SPEQLTAIAPLLLSELPTLKQLGFDWDGGFP----VEPGETAAIARLQEFC 221
>gi|425443748|ref|ZP_18823817.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
gi|389735029|emb|CCI01399.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
Length = 474
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 144/317 (45%), Gaps = 38/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L H L + P T Y F + + + + L+ L+GL + G
Sbjct: 121 GIEVETFW-DQLLHAPGQVLTLSKSPYTVYTPFWKNWSQL-AKASPTTLETLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ E ++P+L +LG + W P + GE A RL++F Q
Sbjct: 179 EKLTETINLPTLENLGFT--------WQNPLP----LTPGEKAASSRLEEFC---QGVIN 223
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+D N + G + ++S L G + R+++ + + A +
Sbjct: 224 NYQEDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAQE--------AKD 272
Query: 423 AGSNWLMFELLWRDFFR 439
+ W EL WR+F++
Sbjct: 273 SIITWQQ-ELAWREFYQ 288
>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
Length = 606
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 136/326 (41%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + ++ VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGADNLRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + I +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQLK 298
G+EV TLY LD + F G+ P Y F+ ++ VE+ T E + +
Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITAEIMGKCS 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S + +PSL +LG + VW GGETEAL RL K
Sbjct: 180 TPVSDDHDDKFGVPSLEELGFETEGLSTAVW----------PGGETEALTRLERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S S L +LLWR+FF
Sbjct: 278 KNSTPSLS-------LYGQLLWREFF 296
>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S ++ ++C DP+ + P R ++L +
Sbjct: 5 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSAD-----MAPARVAYLQGCLQ 59
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS L++ G P+ ++ +LA+ + A+AVY ++++ + ++ AA+K
Sbjct: 60 ELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI W L+ D + G + YG F + + + +L D+
Sbjct: 120 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELV------DL 173
Query: 307 EPGDIPSLLDLGLSQSAAMSQV---WHGGKPAANSMKGGETEALQRLKKFA 354
P + ++ L LS+ + Q+ W GG P ++ GET A+ RL++F
Sbjct: 174 SPEQLTAIAPLLLSELPTLKQLGFDWDGGFP----VEPGETAAIARLQEFC 220
>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
Length = 545
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 129/323 (39%), Gaps = 44/323 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN +L + + ++ DP G S+ G +K FL++ +
Sbjct: 10 VHWFRKGLRLHDNPTLKAGLKGATTFRGIFIIDPWFAGSSNVGINK-----WRFLLQCLE 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL L+ L V G+P VL +L K G + ++ + I ++
Sbjct: 65 DLDTTLRKLNGRLFVVRGQPAHVLPQLFKTWGTTCLTFEKDPEPFGKVRDANITHIAREM 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVE----------IRKTIEALD 295
GI+V TLY L+ + K G++P Y F+ + +E +R +A
Sbjct: 125 GIQVIIKTSHTLYKLEKIISKNGGKLPLTYKTFQNVLSTMEPPPLPASPVTVRDVGDAFT 184
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
+ E +P+L +LG +W KGGE+EAL RL+
Sbjct: 185 PI----DEDHDEKYGVPTLEELGFETENLAPSIW----------KGGESEALARLEHHLE 230
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
G S+Y + +SP+L GCLS R F EL I +
Sbjct: 231 RKAWVASFGRPKMTPQSLYPSRTG--LSPYLRFGCLSARRFFAELNDLYRKIKKSP---- 284
Query: 416 GESGSSGAGSNWLMFELLWRDFF 438
+ S G +LLWR+F+
Sbjct: 285 --APLSLHG------QLLWREFY 299
>gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 466
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 141/315 (44%), Gaps = 36/315 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R ++VWFR+DLR+ DN +L+ A V+ +Y +D + S G G +L
Sbjct: 9 RPAVVWFRDDLRLADNPALHAAAESGRPVICLYVWD-----EDSPGLRSPGEAARWWLHH 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L +++ GS L +R G E VL E+ + A AV+ +R E + +E++++A
Sbjct: 64 SLTSLEESIGRAGSALAIRTGPAERVLAEVLAEVDAGAVFWNRRYGEGERRVDERVKSAA 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPS 302
+D G+ F + L+ + G + Y F R + E R+ + AL +L+ PS
Sbjct: 124 RDTGLVANSFGANLLFEPWTVRTGSGTAFSVYTPFWRACLARPEPRRPLPALRRLRPGPS 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+E ++ LL + + + + W K GE A + L F E A+
Sbjct: 184 LPSLELDEL-KLLPVHPDWADGLRETW----------KPGERAAHRELSAFLGEGLAR-Y 231
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+ +D + G + ++SP L G LSP F TA + S+
Sbjct: 232 RAERD-----VPGIAATSRLSPRLRWGELSP---FQVWHATAAA----------RDRSTA 273
Query: 423 AGSNWLMFELLWRDF 437
G+ + EL WR+F
Sbjct: 274 EGAATFLSELGWREF 288
>gi|425438323|ref|ZP_18818728.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440755927|ref|ZP_20935128.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
gi|389676549|emb|CCH94466.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440173149|gb|ELP52607.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
Length = 474
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 141/316 (44%), Gaps = 36/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS LV+ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLVIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGV-EIR-KTIEALDQLKGLPSR 303
GIEV+ FW L + L + P T Y F + + + R KT+E L L
Sbjct: 121 GIEVETFWDQLLQAPGQV-LTLSKSPYTVYTPFWKNWSQLAKARPKTLENLQGLDENEGE 179
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
E ++P+L +LG + W P + GE A RL++F Q
Sbjct: 180 KLTETINLPTLENLGFT--------WQNPLP----LTPGEKAADSRLEEFC---QGVINN 224
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
+D N + G + ++S L G + R+++ + + A + +
Sbjct: 225 YQEDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAEE--------AKNS 273
Query: 424 GSNWLMFELLWRDFFR 439
W EL WR+F++
Sbjct: 274 IITWQQ-ELAWREFYQ 288
>gi|414071199|ref|ZP_11407172.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas sp. Bsw20308]
gi|410806377|gb|EKS12370.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas sp. Bsw20308]
Length = 435
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 43/317 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN + ++ + V+ +P + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRLTDNAIFSDLVSQQCVLDIVFVINPHWFKNNNYQQKPYGVHKQQFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ L RG L V G+P ++L D V V ++ E+ + +
Sbjct: 66 ELQQELIDRGQTLHVLEGEPVSLLKARINEQNIDEV-----VYSEQFGVYEQRQINLLKS 120
Query: 247 GIEVKYFWGS---TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
F G+ TLY DLPF L E+P ++ FR+KV+ + L LP+
Sbjct: 121 HCPSTKFTGTQQDTLYKQSDLPFDLSELPKHFTPFRKKVEAA------TSPISLSTLPN- 173
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
G +P + L + ++ + G M GG A LK++ + P
Sbjct: 174 -----GLLPQ--PITLCAKKPLERIANNG-----VMHGGFKSAQTHLKQY---FSGLLPS 218
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
K + + G N + K S WLA GC+S R +++ ++ + +
Sbjct: 219 TYKI-TRNELDGFNNTTKFSTWLAFGCVSARQVYNAVEAYE------------HNQITNE 265
Query: 424 GSNWLMFELLWRDFFRF 440
+ W+ FELLWR++F++
Sbjct: 266 STYWIKFELLWREYFKW 282
>gi|426404142|ref|YP_007023113.1| deoxyribodipyrimidine photo-lyase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860810|gb|AFY01846.1| deoxyribodipyrimidine photolyase-class I [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 435
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + ++ WFR DLR+ DN L A E +VLP++ FD K D R +F+
Sbjct: 1 MSKVTVFWFRRDLRLDDNAGLYHALKERSAVLPLFIFDSEILEKLEDPADA----RVTFI 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ + D+++ L+ + SDL+VR GKP VL L+ + +A+YA+ + K +EK+ A
Sbjct: 57 YDQIQDIKQQLKTKKSDLLVRHGKPLEVLKALSTEMEIEAIYANHDYEPAACKRDEKVAA 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV 282
GIE F L+ D++ + + T Y ++ KV
Sbjct: 117 WAAKAGIEFLTFKDQCLFEKDEILTEARKPYTVYTPYKNKV 157
>gi|399220399|gb|AFP33463.1| cryptochrome 2 [Dicentrarchus labrax]
Length = 668
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 137/326 (42%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + +V VY DP G SS G + R FL++ +
Sbjct: 5 SIHWFRKGLRLHDNPALQEAIRGAGTVRCVYFLDPWFAGSSSVGVN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKT-IEAL-DQLKGLP- 301
G+EV TLY LD + + P Y F+ + ++ + +E L D L G
Sbjct: 120 AGVEVIVKTSHTLYDLDKIIELNGAQPPLTYKRFQTLISRLDPPEMPVETLSDTLMGRCV 179
Query: 302 ---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S + +PSL +LG + VW GGETEAL R+ K
Sbjct: 180 TPISEDHGDKYGVPSLEELGFDIEGLPTAVW----------PGGETEALTRIERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ N + S G +SP+L GCLS R + +L T + K
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 278 KNSSPPLS-------LYGQLLWREFF 296
>gi|399008562|ref|ZP_10711032.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM17]
gi|398115998|gb|EJM05769.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM17]
Length = 481
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 146/350 (41%), Gaps = 65/350 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A +V +Y PR + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAATQRGPTV-ALYLLSPRQWQAHDD-----APCKVDFWLRNLE 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L +L L++R + VL++L + + +A++ + E E + + + +
Sbjct: 57 QLSGDLARLNIPLLIRQAPSWEQAPQVLLQLCRELAIEALHVNEEYGIHESRRDMAVASL 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEAL-DQL- 297
+K +G+ + LD L F+ G + T GG+ + + + V + AL QL
Sbjct: 117 LKSQGVGFHSY-------LDQLLFRPGSVLTRSGGYFQVFSQFRKVCYNRLHSALPPQLA 169
Query: 298 -----KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
L + D P + G + +W PA GET A QRL +
Sbjct: 170 APRAQAALRIKADALPWQVEGFPTPG----PHLQALW----PA------GETAAQQRLAR 215
Query: 353 FAA----EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
FA YQA+ + G + ++SP+LA G LSPR +
Sbjct: 216 FAETQLDHYQAERDLPARPG----------TSQLSPYLAAGVLSPRQ----------CLH 255
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPAT 458
AA + N GE S G+ + ELLWR+F++ I Y + P T
Sbjct: 256 AALQNNRGEFASGSPGAVTWINELLWREFYKHILVGYPRVSRHRAFRPET 305
>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
Length = 506
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 142/339 (41%), Gaps = 40/339 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL SV+ V+ DP G S+ G +K FL++
Sbjct: 11 KHTVHWFRKGLRLHDNPSLREGIKNSVTFRCVFVIDPWFAGSSNVGINK-----WRFLLQ 65
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL ++L+ S L V G+P L +L K G + + + I A
Sbjct: 66 CLEDLDRSLRKLNSRLFVIRGQPADTLPKLFKEWGTTNLTFEEDPEPFGRVRDLNIMAMC 125
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV----EIRKTIEALDQLK 298
K+ GI V TLY L+ + K G P Y F+ + + E +T+ A + L+
Sbjct: 126 KELGISVVSKSSHTLYKLEHIIEKNGGNPPLTYHQFQTIIANIGPPPEPEETVTA-NLLE 184
Query: 299 G----LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
G L D + G +P+L +LG VW GGE+EAL RL++
Sbjct: 185 GSQTPLSDDHDNKYG-VPTLEELGFETDKLKPTVW----------SGGESEALARLERHL 233
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
G+ S+ + +SP+L GCLS R + +L + I A
Sbjct: 234 ERKAWVASFGHPKMTPQSLLASQ--TGLSPYLRFGCLSTRLFYYQLVELYKKIKKAM--- 288
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVE 453
S G +LLWR+FF K + K+ E
Sbjct: 289 ---PPLSLHG------QLLWREFFYCAATKNPNFDKMNE 318
>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
Length = 655
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 142/333 (42%), Gaps = 61/333 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + +V VY DP G S+ G + R FL++ +
Sbjct: 5 SIHWFRKGLRLHDNPALQEAVRGADTVRCVYFLDPWFAGSSNLGVN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ S L V G+P V L K + + + + I+ +
Sbjct: 60 DDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKT-IEAL-DQLKGLPS 302
G+EV TLY+LD + G+ P Y F+ + ++ + +E L + + G
Sbjct: 120 AGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGCCV 179
Query: 303 RGDVEP-GD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
E GD +PSL +LG S VW GGETEAL R+ K
Sbjct: 180 TPVAEDHGDKYGVPSLEELGFDIEGLPSAVW----------PGGETEALTRIERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR-------SMFDELKKTAT 405
+ A ++ P+ N + S G +SP+L GCLS R ++ ++KKT+T
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKLTDLYRKVKKTST 281
Query: 406 SISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ L +LLWR+FF
Sbjct: 282 PPLS------------------LYGQLLWREFF 296
>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
Length = 540
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 145/339 (42%), Gaps = 56/339 (16%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTG 174
A R + WFR LRVHDN +L+ +A N + V P++ DP + + G
Sbjct: 3 AQRSTLVHWFRKGLRVHDNPALSQIFSAANAAPGKYFVRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +++ DL L+ S L V GKP V + K+ + + ++ +
Sbjct: 58 ANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPADVFPRIFKSWRVEILSFETDIEPYSMT 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ K EG++V+ + T+Y+ + + K LG+ P Y F V+ +++ K + +
Sbjct: 118 RDAAVQKLAKTEGVKVETYCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGS 177
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ-VWHGGKPAANSMKGGETEALQRLKK 352
++L + S P D DL M Q V + N GGETEAL+R+
Sbjct: 178 PEKLTNITS----PPKDEVEQEDLAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRM-- 231
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDE 399
+D D I+ A F + +SP+L GCLS R + +
Sbjct: 232 -------------EDSLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFYQK 278
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
L + S S + S L+ +L+WR+F+
Sbjct: 279 LTEIIKRQSKHS-----QPPVS------LIGQLMWREFY 306
>gi|411117128|ref|ZP_11389615.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713231|gb|EKQ70732.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 493
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 143/325 (44%), Gaps = 51/325 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A S V+ V+C DP + D P R S+++ +
Sbjct: 6 LFWHRRDLRLADNVGLAAARQRSSKVVGVFCLDPTILQR-----DDVAPVRVSYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ GS L++ P+ +V LA + A AV+ +++V + + AA++++
Sbjct: 61 SLQEGYAKVGSQLLIVKTLPQKGIVNLATTLNARAVFWNQDVEPYSRARDRTVAAALREQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR--- 303
GIE FW L+ D+ G+ T Y F E + ++ L Q+ GL ++
Sbjct: 121 GIEACPFWDQLLHAPKDITTGSGQPYTVYTPFWRNWSSKEKSQPLDTLAQVTGLTAKEQE 180
Query: 304 -----GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA---- 354
G +E +P+ DLG +W A ++ GE A +L++F
Sbjct: 181 LASQAGAIE---LPTAPDLGF--------IW----TAPFVIEPGEAGASVKLEEFCNRAI 225
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
AEYQ Q N + G + ++S L G + R+++ A +++A +
Sbjct: 226 AEYQEQ-------RNFPAYPG---TSQLSAALKFGAIGIRTVW------AATLAAMEQSR 269
Query: 415 DGESGSSGAGSNWLMFELLWRDFFR 439
E+ S W EL WR+F++
Sbjct: 270 SNEARDS--IRTWQQ-ELAWREFYQ 291
>gi|404399161|ref|ZP_10990745.1| deoxyribodipyrimidine photolyase [Pseudomonas fuscovaginae UPB0736]
Length = 481
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 149/354 (42%), Gaps = 73/354 (20%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+HDN +L+ A +V V+ P + P + F + ++
Sbjct: 3 LFWLRTDLRLHDNTALSAAARSGPTV-AVFLLTPGQWLAHDDA-----PCKIDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R + VL++L + + DAV+ + E E + ++ + A
Sbjct: 57 ELSQALAELNIPLLIRHADTWDQAPAVLLDLCQPLAIDAVHVNEEYGVHETRRDQAVAKA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG--- 299
++ GI+ HLD L F+ G + T GG+ + + RK + +L G
Sbjct: 117 LESHGIDFHS-------HLDQLFFRPGSVLTRTGGYFQVFS--QFRKVCYS--RLHGALP 165
Query: 300 -----------LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQ 348
LP D IPS +D S + ++ +W PA GE EA +
Sbjct: 166 ALVAAPATQAPLPLSSD----PIPSAVDGFASPAQSLRDLW----PA------GEKEARR 211
Query: 349 RLKKFAAE----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTA 404
RL+ FA + YQ++ K G + ++S +LA G +SPR
Sbjct: 212 RLESFADQQIDYYQSERDFPAKPG----------TSQLSTYLAAGVVSPRQ--------- 252
Query: 405 TSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPAT 458
+ AA + N GE S G+ + ELLWR+F++ I Y + P T
Sbjct: 253 -CLHAALQSNQGEFDSGNVGAVTWINELLWREFYKHILVGYPRVSRHRAFRPET 305
>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
Length = 1043
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 137/337 (40%), Gaps = 38/337 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN +L + S V+ DP G S+ G +K +R FL++
Sbjct: 106 KHTVHWFRKGLRLHDNPALREGVRGATSFRCVFVIDPWFAGSSNVGINK---WR--FLLQ 160
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +NL+ S L V G+P L +L K + + + I
Sbjct: 161 CLDDLDRNLRKLNSRLFVIRGQPADALPKLFKEWSTTCLTFEEDPEPFGRVRDHNISEMC 220
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV------EIRKTIEALDQ 296
K+ GIEV TLY+L+ + K G P Y F+ + + E T+EA+
Sbjct: 221 KELGIEVISAASHTLYNLERIIEKNGGRAPLTYHQFQAIIASMDAPPQPETTITLEAIGG 280
Query: 297 LKG-LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
L D + G +P+L +LG A VW GGETEAL RL++
Sbjct: 281 ATTPLYDDHDDKYG-VPTLEELGFETEALRPPVW----------IGGETEALARLERHLE 329
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
G S+ + +SP+L GCLS R + +L I A
Sbjct: 330 RKAWVASFGRPKMTPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKACP--- 384
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVV 452
L +LLWR+FF K + K+
Sbjct: 385 ---------PLSLHGQLLWREFFYCAATKNPTFDKMA 412
>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 140/328 (42%), Gaps = 51/328 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + ++ VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGADNLRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + I +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI-RKTIEALDQLKGL 300
G+EV TLY LD + F G+ P Y F+ ++ VE+ +TI A ++ G
Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITA--EIMGK 177
Query: 301 PSRGDVEPGD----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------ 350
S + D +PSL +LG + VW GGETEAL RL
Sbjct: 178 CSTPVSDDHDNKFGVPSLEELGFETEGLSTAVW----------PGGETEALTRLERHLER 227
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 228 KAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRK 275
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S S L +LLWR+FF
Sbjct: 276 VKKNSTPSLS-------LYGQLLWREFF 296
>gi|452824468|gb|EME31471.1| photolyase/blue-light receptor (PHR2) [Galdieria sulphuraria]
Length = 362
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 144/336 (42%), Gaps = 72/336 (21%)
Query: 119 GAAIRRASIVWFRNDLRVHDNESLNTA-NNESVS---VLPVYCFDPRDYGKSSSGFDKTG 174
G A RR +VWF DLRV DNE+L A N SV VLP+ +
Sbjct: 87 GGAPRRI-LVWFFADLRVQDNEALIKAVQNGSVPGGLVLPLV------------ALHQEM 133
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
P A V +L+ LQ RGSDL V ++E+ G +A+Y + D+++
Sbjct: 134 PRSA------VVELKTELQRRGSDLCVLPKFSTESVLEVCHKYGIEAIYYNHAELPDQIQ 187
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLP-FKLGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ ++ +GI+V+ FW +TL D ++ +M + F ++ K V++ + +
Sbjct: 188 LQTEMITDLESKGIQVEGFWSNTLVSPDQFANLEISDM--GFRKFSQEAKNVKVSQPLSV 245
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF 353
++L +P DIP LLD + V G A S E Q+
Sbjct: 246 PNKLPHVPE-------DIPRLLD---------NSVGTYGFSIAESTAWSLLETHQK---- 285
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
N D GA F ++ P+L GC+SPR++FD +K+
Sbjct: 286 -----------NSCKESD---GA-FIFRLKPYLDHGCISPRNLFDSMKEM---------- 320
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAK 449
N+ + SG L ELLWR + FI+ + K
Sbjct: 321 NNKHTIPSGM-FQILYAELLWRSYVTFISHQRIKVK 355
>gi|425462955|ref|ZP_18842418.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
gi|389823910|emb|CCI27577.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
Length = 474
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 145/317 (45%), Gaps = 38/317 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ G P LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGNPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGL-PSRG 304
GIEV+ FW L + L + P T Y F + + + + + L+ L+GL + G
Sbjct: 121 GIEVETFWDQLLQAPGQV-LTLSKSPYTVYTPFWKNWSQL-AKASPKTLENLQGLDENEG 178
Query: 305 D--VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ E ++P+L +LG + W P A GE A RL++F Q
Sbjct: 179 EKLAETINLPTLENLGFT--------WQNPLPLA----PGEKAARSRLEEFC---QGVIN 223
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+D N + G + ++S L G + R+++ + + A +
Sbjct: 224 NYQEDRNFPAFDG---TSRLSAALKFGAIGIRTIWTATLELLENCRAQE--------AKD 272
Query: 423 AGSNWLMFELLWRDFFR 439
+ W EL WR+F++
Sbjct: 273 SIITWQQ-ELAWREFYQ 288
>gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
Length = 474
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 93/318 (29%), Positives = 144/318 (45%), Gaps = 45/318 (14%)
Query: 124 RASIVWF-RNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
RA ++W+ R DLR+ DN +L A VLPVY D +D ++ + G
Sbjct: 4 RAPVIWWIRRDLRLCDNPALTAAAESGAPVLPVYILDEQDEALGAAPKFRLGL------- 56
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+ + L GS L++R GK VL +L + GA AV+ R ++ + +I+
Sbjct: 57 -GLDHFGQELAKAGSCLILRRGKALRVLQDLIEETGAGAVHWSRLYDPQAIRRDSEIKQT 115
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+K++G+ VK G L+ + K G M Y F + V+ ++ D L LP+
Sbjct: 116 LKEQGVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSRDV-------DSL--LPA 166
Query: 303 RGDV-EPGDIPSLLDLG-LSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
G + P + P+ DL +AAM + G A + GET AL+RL+ F E
Sbjct: 167 PGKIAAPDNWPASEDLADWRMAAAMRR---GADVVARYCRVGETAALERLETF-LEDSVD 222
Query: 361 PPKGNKDGNHDSIYGA-NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
K +D Y A + + +S LA G +SP M+ + SAA E G
Sbjct: 223 AYKARRD------YPAEDATSGLSENLAWGEISPHRMWHQ-------GSAAM-----ERG 264
Query: 420 SSGAGSNWLMFELLWRDF 437
S GA + E++WR+F
Sbjct: 265 SQGAEH--FLKEIVWREF 280
>gi|440229885|ref|YP_007343678.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
gi|440051590|gb|AGB81493.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
Length = 476
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 145/321 (45%), Gaps = 43/321 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L A + V+ ++ P+ + + + P +A+F+ ++
Sbjct: 5 LVWLRNDLRITDNKALYAACRDPQAQVVALFIATPQQWRRH-----EMAPRQAAFIYANL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
LR L RG LVV+ L + +A G DA++ +R+ +E + + ++E+
Sbjct: 60 LQLRSQLAQRGIPLVVQQCDDFAAAARWLTDYCRATGVDALFYNRQYELNERRRDRQVES 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
A+ E + F + L + GEM + FR+ L +L +
Sbjct: 120 ALA-ETLTCHAFDDALLLPPGSVQTGSGEMYQVFTPFRKAF-----------LQRLLSV- 166
Query: 302 SRGDVEPGDIPSLLDLG-LSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
DV PS+ G +++ AA + + GE AL+RL+ F E Q +
Sbjct: 167 ---DVHSLPAPSVRAGGAIAEPAAPEPFAYPDAEWDAAFPPGEEHALRRLRAFCRE-QVE 222
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
+ +D + + +SP+LA+G LSPR F+ L+ T + ESG+
Sbjct: 223 DYRQQRD-----FPALDATSGLSPYLALGVLSPRQCFNRLRLTCPDLL-----TQPESGA 272
Query: 421 SGAGSNWLMFELLWRDFFRFI 441
WL EL+WR+F+R +
Sbjct: 273 ----FTWLN-ELIWREFYRHL 288
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 144/325 (44%), Gaps = 51/325 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN LN A S ++ V+CFDP+ D+ P R +L+ +
Sbjct: 6 LFWHRRDLRLDDNIGLNEAQQHSNKIVGVFCFDPKLLQS-----DQVAPARIKYLLGCLK 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L + GS+L+ P T + +LA+ + A AV+ + +V K + +++A++ +
Sbjct: 61 ELAAGYKKAGSELLFLQADPVTAIPKLAETLNASAVFWNHDVEPYGRKRDRAVQSALEAK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
I V W L+ ++ K GE P Y + K + + E + Q++ L D
Sbjct: 121 NIPVHTVWDQLLHAPGEILTK-GEDP--YKVYTPFWKNWQKQPKAEPVGQIRHLTGLTDS 177
Query: 307 EPG--------DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA---- 354
E +P+L DLGL+ W P + GET A +RL++F
Sbjct: 178 EQAKSATVGKISLPTLNDLGLT--------WDNDLP----LLPGETAARERLEQFCDRAI 225
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+Y +++ N+ +I G + +S L G +S R E+ +T ++ W
Sbjct: 226 LDY-------DQNRNYPAIDGTSV---LSAALKFGAISIR----EIWQTTVTL-----WE 266
Query: 415 DGESGSSGAGSNWLMFELLWRDFFR 439
D S + EL WR+F++
Sbjct: 267 DTRSDEARDNITAWRQELAWREFYQ 291
>gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 508
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 142/330 (43%), Gaps = 39/330 (11%)
Query: 116 PNNGAAIRRA-------SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS 168
P++G+A R SIVW R+DLRV DN +L+ A ++ +Y D + S
Sbjct: 7 PDHGSADREGAEEAHGPSIVWLRDDLRVADNPALHAAVERGEPIVVLYVLD-----EESD 61
Query: 169 GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREV 228
G G +L S+S L ++L+ GSDLV+R GK V+ +L + IGA AV +R
Sbjct: 62 GIRPLGGAARWWLHMSLSRLAESLRELGSDLVLRRGKAADVVDDLVREIGAGAVLWNRRY 121
Query: 229 SHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI- 287
E+ + I+ + D G++V+ F GS L + K GE Y F + + E
Sbjct: 122 GGAEIAVDTAIKKDLGDRGLDVRSFQGSLLVEPWTVTNKQGEPFRVYTPFWKAAQEREEP 181
Query: 288 RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEAL 347
RK + A +L P + P DL W G S GE L
Sbjct: 182 RKPLPAPKELDA--------PREAPRSDDLDGWGLLPTKPDWAAG--LRESCDPGEAAGL 231
Query: 348 QRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
QRL+ F ++ + +D A + ++S +L G +SP ++ +++T
Sbjct: 232 QRLEDF-VHHELEDYAAQRDEP-----AAMTTSRLSAYLRWGEVSPFQVWHRIQRTRGK- 284
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDF 437
+ G + + EL WR+F
Sbjct: 285 ---------KVGGDEVNATKFLSELGWREF 305
>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
Length = 658
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 141/333 (42%), Gaps = 61/333 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + +V VY DP G S+ G + R FL++ +
Sbjct: 5 SIHWFRKGLRLHDNPALQEAVRGADTVRCVYFLDPWFAGSSNLGVN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL NL+ S L V G+P V L K + + + + I+ +
Sbjct: 60 DDLDSNLRKLNSRLFVVRGQPANVFPRLFKEWKISRLTFEYDSEPFGKERDAAIKKLAME 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKT-IEALDQ--LKGLP 301
G+EV TLY+LD + G+ P Y F+ + ++ + +E L +
Sbjct: 120 AGVEVIVKTSHTLYNLDKIIELNGGQPPLTYKRFQTLISRMDPPEMPVETLSNSIMGCCV 179
Query: 302 SRGDVEPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
+ + GD +PSL +LG S VW GGETEAL R+ K
Sbjct: 180 TPVSEDHGDKYGVPSLEELGFDIEGLPSAVW----------PGGETEALTRIERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR-------SMFDELKKTAT 405
+ A ++ P+ N + S G +SP+L GCLS R ++ ++KKT+T
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKLTDLYRKVKKTST 281
Query: 406 SISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ L +LLWR+FF
Sbjct: 282 PPLS------------------LYGQLLWREFF 296
>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 140/328 (42%), Gaps = 51/328 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN SL + + ++ VY DP G S+ G R FL++ +
Sbjct: 5 TVHWFRKGLRLHDNPSLRDSIKGADNLRCVYILDPWFAGSSNVGIS-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + I +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWKISRLSYEYDSEPFGKDRDAAIRKLATE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI-RKTIEALDQLKGL 300
G+EV TLY LD + F G+ P Y F+ ++ VE+ +TI A ++ G
Sbjct: 120 AGVEVFVRISHTLYDLDKIIEFNGGQSPLTYKRFQTLISRMDPVEMPAETITA--EIMGK 177
Query: 301 PSRGDVEPGD----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------ 350
S + D +PSL +LG + VW GGETEAL RL
Sbjct: 178 CSTPVSDDHDNKFGVPSLEELGFETEGLSTAVW----------PGGETEALTRLERHLER 227
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 228 KAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYRK 275
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S S L +LLWR+FF
Sbjct: 276 VKKNSTPSLS-------LYGQLLWREFF 296
>gi|237799740|ref|ZP_04588201.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331022595|gb|EGI02652.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 482
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 142/323 (43%), Gaps = 49/323 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + K F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAALQRGPTLAVYLLSPAQWHSHDDADCKV-----DFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L K L L++R K VL L K + + V+ ++E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDKAPEVLSTLCKELKVEGVHLNQEYGVNETRRDQAVQQT 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ +GI V ++ LD L FK G + T G + + + K V + EA+ +L
Sbjct: 117 LEKDGIHVTHY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRLVR 169
Query: 300 LPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P V+ IP + + S A+ +W PA GE EA +R+ FA E
Sbjct: 170 TPPAQQPLSVKSDAIPEQVKGFATPSKALRDLW----PA------GEAEASRRMAAFADE 219
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K ++D + ++S +LA G +SPR + AA N G
Sbjct: 220 -QISYYKTDRD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALASNQG 263
Query: 417 ESGSSGAGSNWLMFELLWRDFFR 439
E + G+ + ELLWR+F++
Sbjct: 264 EFETGDVGTVTWINELLWREFYK 286
>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340782929|ref|YP_004749536.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340557080|gb|AEK58834.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
Length = 476
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 139/319 (43%), Gaps = 51/319 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRD-YGKSSSGFDKTGPYRASFLIES 184
+IV FRNDLR+ D+ +L A VLPVY D YG + + ES
Sbjct: 6 TIVLFRNDLRLADHPALWYAAQRG-PVLPVYLRHAADSYGSAWRWWHG----------ES 54
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L+ L RG L++R G + VL E+ +A GADAVY +R D + ++++++ K
Sbjct: 55 LLKLQAALAQRGLPLLLRSGTAKAVLPEIVRASGADAVYWNRRYDRDGIAEDQELKSLFK 114
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-EALDQLKGLPSR 303
+ G+E + F G+ L P++ Y F K + R + L + + +
Sbjct: 115 ELGVEARSFPGNLLVE----PWEHLREGQPYRVFTPFWKAMLARHRFPQPLAEPESYRA- 169
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKP-----AANSMKGGETEALQRLKKFAAEYQ 358
P IP+ DL WH P A + GE A +RL+ F E
Sbjct: 170 ----PTAIPASEDLA-------RWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGL 218
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
A +G ++ G F ++SP+LA G +SPR ++ L + A E
Sbjct: 219 AHYAEGR------NLPGKPFVSRLSPYLAHGEISPRQIWWHLSRLAE-----------EQ 261
Query: 419 GSSGAGSNWLMFELLWRDF 437
G+ + + EL WR+F
Sbjct: 262 GAWRRNVDAFLRELGWREF 280
>gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
Length = 481
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 139/326 (42%), Gaps = 65/326 (19%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFD-------PRDYGKSSSGFDKTGPYRA 178
S+VWFR DLR +D+ +L A +S V+ + FD PRD D+ R
Sbjct: 4 SLVWFRRDLRDYDHAALYHALKDSEQVVCAFVFDTDILDGLPRD--------DR----RV 51
Query: 179 SFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
F+ ESV +L+ LQ RG DL+VR GK + LA +G + VY +R+ VK ++
Sbjct: 52 EFIWESVRELKLALQERGGDLLVRHGKATEEIPALASVLGVECVYCNRDYEPAAVKRDDT 111
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + +GI K F ++ D++ K G T + F K +RK + LK
Sbjct: 112 VSQQLGTQGIAFKSFKDQVIFERDEIMTKSG---TPFSVF-TPYKNACLRKLDDF--HLK 165
Query: 299 GLPSRGDVE------PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
P + P +PSL L ++S + Q+ M GG
Sbjct: 166 AYPVDRYIHHLAQSAPQPMPSLESLAFARS-NLKQL-----RLPTGMSGGMA-------- 211
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
++ + P+ + ++ G ++ +S L G +S R + A +
Sbjct: 212 LFEDFSERMPRYRDARDFPALKGPSY---LSVHLRFGTVSIRHL------------ARTA 256
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
W G GAG+ + ELLWRDF+
Sbjct: 257 WQQG-----GAGAETWLNELLWRDFY 277
>gi|365887145|ref|ZP_09426019.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
gi|365337300|emb|CCD98550.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 140/318 (44%), Gaps = 36/318 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR LR+ D+ +L A V+ Y +D + SSG G +L +S+
Sbjct: 6 TIVWFRESLRLSDHPALYAAAKSGGPVVCSYIYD-----QESSGLRHLGAATRWWLAQSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L+ +L+ G+DL++R G+ VLVELA+ A AVY + + +EA + +
Sbjct: 61 RALQADLKTLGADLIIRRGRAAQVLVELARETRASAVYWNDVAQAGPRRVASSVEAGLGE 120
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G+ + F L + K G P + F ++V + D K LP+ G
Sbjct: 121 IGVASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLALG--------DPPKPLPTPGR 172
Query: 306 VEPGDIPSLLDLGLSQSAA--MSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
+ +P+++ L + + W GG A + + GE A QRL F +
Sbjct: 173 L--AAVPNVVSLTVDELMLEPTRPDWAGGLRA--TWQAGERAAQQRLGSF-----LESAV 223
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
G+ G+ D + + ++SP L G +SPR ++ + A A +K
Sbjct: 224 GSYAGDRDRP-DIDATSRLSPHLRFGEISPRQIWYAARFAAEERPALAK----------- 271
Query: 424 GSNWLMFELLWRDFFRFI 441
G + + E+ WR+F R +
Sbjct: 272 GIDKFLSEIGWREFSRHL 289
>gi|330811712|ref|YP_004356174.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|423699267|ref|ZP_17673757.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q8r1-96]
gi|327379820|gb|AEA71170.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|387996309|gb|EIK57639.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q8r1-96]
Length = 483
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 145/335 (43%), Gaps = 51/335 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L A + V VY P + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALAAAAAQGPCV-AVYLTSPEQWRAHDDA-----PCKIDFWLRNLG 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L L L++R + VL++L + + AV+ + E +E + + ++
Sbjct: 57 ALSATLAELNIPLLIRAAAHWHQAPQVLLKLCRELNVGAVHVNEEYGLNETRRDAEVARV 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ D+G+E HLD L FK G + T G + + + + V + +L L
Sbjct: 117 LNDQGVEFHS-------HLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPSLVA 169
Query: 300 LPSR---GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P+R + +P+ +D S A+ +W PA GETEA +RL F +
Sbjct: 170 TPARQALTGIARDPVPTQVDGFAPPSEALRALW----PA------GETEARRRLDTFVDQ 219
Query: 357 YQAQPPKGNKDGNHDSIYGAN-FSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ +G +D Y A + ++S +L G +SPR + AA + N
Sbjct: 220 H-IDDYQGERD------YPARPGTSQLSAYLVAGVVSPRQ----------CLHAALQANQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE S AG+ + ELLWR+F++ I Y +
Sbjct: 263 GEFESGSAGAVTWINELLWREFYKHILVGYPRVSR 297
>gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
NK-01]
gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
NK-01]
Length = 478
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 149/346 (43%), Gaps = 55/346 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR+DLRV DN +L+ A N ++ +Y P + + P + F + ++
Sbjct: 4 LMWFRSDLRVQDNTALSQAMNRGATI-ALYLITPDQWQRHDD-----APCKVDFWLRNLR 57
Query: 187 DLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L K L L+VR G + ++ + AV+ + E +E + ++ A
Sbjct: 58 ELSKALAELNVPLLVRQCHDWGDVPVQVADVCQEHTICAVHVNEEYGINESLRDRRVSAY 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ + I W S HLD + FK G + T GG+ + + + V + AL L
Sbjct: 118 LSQQAIA----WHS---HLDQILFKPGSVLTRSGGYFQVYSQFRKVCYERLHSALPALVT 170
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P DV+ IP + + S ++ +W PA GE ALQRL++FA E
Sbjct: 171 QPKAQTPMDVKSDIIPDSVKGFATPSESLRLLW----PA------GEQAALQRLERFADE 220
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K +D + ++S +LA G LSPR + AA N G
Sbjct: 221 -QVAFYKDERD-----FPAKPGTSQLSAYLAAGILSPRQ----------CLHAALSANRG 264
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFI------TKKYSSAKKVVEAVP 456
E S G + ELLWR+F++ I ++ + + EAVP
Sbjct: 265 EFDSGNQGVITWINELLWREFYKHILVGYPRVSRHRAFRPETEAVP 310
>gi|443646532|ref|ZP_21129464.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
gi|159027902|emb|CAO89709.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335725|gb|ELS50187.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa
DIANCHI905]
Length = 474
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L+ A S ++ V+C DP + D P R ++L+ +
Sbjct: 6 LFWHRRDLRLSDNIGLSKARERSPKIIGVFCLDP-----AILEGDDIAPARVAYLLGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L KN + +GS L++ GKP LV LA + A AV+ + ++ + ++++ AA++ +
Sbjct: 61 ELEKNYRQKGSQLLIIRGKPSQTLVNLAGNLSAKAVFFNLDIEPYARQRDQQVIAALQTK 120
Query: 247 GIEVKYFWGSTL 258
GIEV+ FW L
Sbjct: 121 GIEVETFWDQLL 132
>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
Length = 489
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 135/316 (42%), Gaps = 39/316 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFR DLR+ DN +L+ A V+PV+ D + G+ G R +L S++
Sbjct: 7 LVWFRQDLRLADNPALSDAARSGRPVVPVFVLD----DDTPGGWRPGGASR-WWLHHSLA 61
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++L GS LV+R G+ + + EL + GA V +R + + +++A ++
Sbjct: 62 SLSRSLATAGSPLVLRRGRADVAIGELVRETGAGTVLWNRCYEPWATERDSRLKADLRAA 121
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGD 305
G+EVK F GS L + GE + F V + + + A D+L+ P+
Sbjct: 122 GVEVKSFNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDWPEPLAAPDRLEAPPTAPA 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF----AAEYQAQP 361
+P + LL + + Q W + GE RL+ F AA+Y
Sbjct: 182 SDPLESWGLLPTTPDWAGGLRQAW----------QPGEAAVAARLRAFLEGAAADYAEGR 231
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ DG + ++SP+L G +SPR ++ + S + ES
Sbjct: 232 DRPGSDG----------TSRLSPYLHFGEISPRQVWAATRDAMLSGNPPEHRRHAES--- 278
Query: 422 GAGSNWLMFELLWRDF 437
+ EL WR+F
Sbjct: 279 ------FLRELGWREF 288
>gi|406507547|gb|AFS34617.1| cryptochrome 2 [Clunio marinus]
Length = 657
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 135/344 (39%), Gaps = 50/344 (14%)
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
DPN + + WFR LR+HDN +L + + V+ DP G S+ G +K
Sbjct: 3 DPNQLPKKEKHIVHWFRKGLRLHDNPALREGLKNATTFRAVFFVDPWFAGSSNVGINK-- 60
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
FL++ + DL +NL+ S L V G+P L L K + +
Sbjct: 61 ---WRFLLQCLEDLDQNLRRLNSRLFVIRGQPAEKLPMLFKKWNTTCLTFEEDPEPFSKV 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ I K+ IEV TLY L+ + K G+ P Y F+ + +E EA
Sbjct: 118 RDNNITEMCKELNIEVISAVSHTLYKLEKIIEKNNGKAPLTYHQFQAIIASMEPPPPAEA 177
Query: 294 L---DQLKGLPSRGDVEPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEAL 347
D + + D + D +P+L +LG +W GGETEAL
Sbjct: 178 TIAEDIIGNTRTPIDDDHDDRYGVPTLEELGFDTEGLKPPIW----------IGGETEAL 227
Query: 348 QRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPR-------SMFDEL 400
RL++ G + S+ + +SP+L GCLS R ++ ++
Sbjct: 228 ARLERHLERKAWVASFGRPKMSPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTDLYKKI 285
Query: 401 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKK 444
KKT +S L +LLWR+FF K
Sbjct: 286 KKTCPPLS-------------------LHGQLLWREFFYCCATK 310
>gi|407846250|gb|EKG02478.1| DNA photolyase, putative,cryptochrome, putative [Trypanosoma cruzi]
Length = 871
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 181/426 (42%), Gaps = 79/426 (18%)
Query: 50 FIQPKISTLFSHQPNKVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLG 109
+QP+ + S + + T T S S + ++ S S+ S A L +P L
Sbjct: 148 LLQPERPEMESQYERGLSKTEEVDTETPASASWVTKMN-SSCSYLSRQDALYLAAPTPLD 206
Query: 110 PHRPL--DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNES-----VSVLPVYCFDPRD 162
P+ P + + + +V+ ND+RVHDN +L A + + V+ V D R
Sbjct: 207 ARMPVVSTPASSSCV---MVVFAANDMRVHDNYTLALAAVRAEAAGGLPVIAVAVIDYRT 263
Query: 163 YGKSSS--GFDKTGPYRASFLIESVSDLRKNLQAR-GSDLVVRVGKPETVLVELAKAIGA 219
+ + S+ G+ + P RA F +ES++ LR L+ L++R G+PE + LA GA
Sbjct: 264 FAQPSAVGGYFRQSPMRARFFLESLAKLRAKLEEELNVPLLIRCGRPEEHVPRLAVECGA 323
Query: 220 DAVYA------HREVSHDE-VKSEEKIEAAMKD--EGIEVKY------------------ 252
V+ H + HD V+S ++ + +D G+++K
Sbjct: 324 TDVFMTTQYAPHEKNVHDTIVESIKRRKWVSRDVASGLKLKTHDAAVSHPYGNCDGDREA 383
Query: 253 -----------FWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI---EALDQLK 298
W +TL H+DDLP + M + + V IR T + ++
Sbjct: 384 VTAAVSPVPHSVWQTTLVHIDDLPVPVAAMAEGERWYHDDVTVASIRPTAPYDRYIARIS 443
Query: 299 GLPSRGDVEP---------------GDIPSLLDLGL--SQSAAMSQVWHGGKPAANSMKG 341
LP+R ++ P G IP+L LG ++ A+ +V +S
Sbjct: 444 SLPTRHELLPTAAERSGLAHPPLYRGSIPTLDQLGYGNQEAFAVEEV----IATQSSHPP 499
Query: 342 GETEALQRLKKFAA--EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 399
GE A++R++ + A + G + + +Y S ++SP+L+ G LSPR ++
Sbjct: 500 GEHAAIERVEDWLAGGGVTSLLRHGREHRTNVKMYSQRLS-RVSPYLSNGSLSPRRFYEM 558
Query: 400 LKKTAT 405
L+ AT
Sbjct: 559 LRCYAT 564
>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 616
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 102/410 (24%), Positives = 179/410 (43%), Gaps = 60/410 (14%)
Query: 69 PTQASTLTHISLSASSTLSPSKISFKST-LSANP---LQSPLSLGPHRPLDPNNGAAIR- 123
P+Q++ + ++ S + T P + ST +P + L G RPL + R
Sbjct: 8 PSQSAVESDLNPSLTMTQHPIREGIPSTRFPTSPPKFYEDTLQTGEQRPLSTSQCEKTRL 67
Query: 124 ----RASIVWFRNDLRVHDNESLNT---ANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY 176
R ++WFR DLR+HDN +L+ A + + PVY R K K G
Sbjct: 68 YHKRRRILLWFRRDLRLHDNGALHAAIQATDSDTVLFPVYILH-RPENK------KCGAV 120
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKS 235
R FL+E + D+ +L+ + S L+V G+ + L L +A D ++ ++ + +K
Sbjct: 121 RFQFLLECLEDIDTSLRQKQSRLLVFCGEAISFLTVLMQAWKITDLIFEKFQLPY-AIKR 179
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGV-EIRKTIEA 293
+EKI + + I V G+TL+ ++ ++P ++ F + V + + R +
Sbjct: 180 DEKIMSMAQTLHINVTTVSGATLHDPKEIVTLNHNQVPLDFQNFLDIVSDMPQPRLPLLT 239
Query: 294 LDQLKGLPSRGDVEP-----------------GDIPSLLDLGLSQSAAM-----SQVWHG 331
QL S VE + L+D + ++ + V+
Sbjct: 240 PSQLPSFESVISVETLCECFQAEYLSQSLLNITEAQLLIDTIIGKAYGLLTIPALDVFGY 299
Query: 332 GKPAANS-MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGAN--FSCKISPWLAM 388
P+ +S + GGE+ AL+RL+ F + + G + S N + +SP+LA
Sbjct: 300 LTPSQHSFLYGGESVALERLEVFCS---IEERVGCFEKPKTSPVQMNPPSTTALSPYLAF 356
Query: 389 GCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
GCLS R++F + + S+ SK G +S G +L+WR+FF
Sbjct: 357 GCLSVRALFYRIMFIQLNFSSVSK---GSPATSLDG------QLMWREFF 397
>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
Length = 524
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 42/322 (13%)
Query: 127 IVWFRNDLRVHDNESLNTA----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
I WFR LR+HDN +L A + PV+ DP + K++ K GP R FL+
Sbjct: 8 IHWFRKGLRLHDNPALLNALEKVGESHYELRPVFILDPW-FVKNA----KVGPNRWRFLV 62
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+S+ DL NL+ GS L + G P ++ K + ++ +E+I+
Sbjct: 63 QSLQDLDDNLKKIGSRLFILKGSPTETFKKVFKEWNVKKLTFEVDIEPYAKTRDEEIKKL 122
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKL--GEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ V T+Y L+ + FK + P Y F+ V + +AL+ L
Sbjct: 123 ADHHSVTVVAKVSHTIYDLEKV-FKANGNKAPLTYVKFQSVV--AKFGTPEKALNAPGKL 179
Query: 301 PSRGDV----EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P + + ++P L ++ + + +++ +GGETEAL R++K+ ++
Sbjct: 180 PKQCQTLLLSDKYNVPLLEEMQVDLTGLGKELY----------RGGETEALARMEKYMSQ 229
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
D + +SI + + +SP+L GCLSPR M+ L + DG
Sbjct: 230 QDWVCKFSKPDTSPNSIEPS--TTVLSPYLKFGCLSPRLMYHRLHEII----------DG 277
Query: 417 ESGSSGAGSNWLMFELLWRDFF 438
+S S L ++LWR+F+
Sbjct: 278 RKHTSPPTS--LTGQMLWREFY 297
>gi|358394234|gb|EHK43635.1| photolyase [Trichoderma atroviride IMI 206040]
Length = 953
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 146/373 (39%), Gaps = 67/373 (17%)
Query: 130 FRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRDYGKSSSGFD-KTGPY--------- 176
R DLR DN L+TA + +LPVY P S D KT PY
Sbjct: 11 MRRDLRTSDNPILHRLSTAEHGFTHLLPVYILPPDQMEVSGLVKDGKTSPYPPARFHLSQ 70
Query: 177 -------RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD-------AV 222
RA F+ ES+ DL+ NL+ GS LV+RVG + VL + + A+ AV
Sbjct: 71 RWKCGHLRAKFIAESLWDLKGNLENLGSGLVIRVGAFDGVLSGIIQHYAANQHGPQVTAV 130
Query: 223 YAHREVSHDEVKSEEKIEAAMKDEGIE------VKYFWGSTLYHLDDLPFKLGEMPTNYG 276
+ + S D+ EE + A IE VKY L ++ + +P ++
Sbjct: 131 WMTEDYSPDQQGEEEAVSAICDAHAIEFLRLYDVKYLLHDI--QLPEIETGIDRLPDSFD 188
Query: 277 GFREKVKG----------VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLS---QSA 323
F +K + R ++ + LP + P +IP L+ GL QS
Sbjct: 189 LFWRALKTKAENPLDPVPLVTRSSLPSFPDHASLPPQES--PFEIPDTLE-GLIQKLQSP 245
Query: 324 AMSQVWHGGKP------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNH---DSIY 374
+ H +P ++ GGET QR++ KG H D ++
Sbjct: 246 VQLPMVHLDRPELRDAAMPQALLGGETRGQQRVRYIIK-------KGIASSYHLLLDDVH 298
Query: 375 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 434
+ + P+LA+GC++ R + EL K G AG+ + + LL
Sbjct: 299 VGDGDHGLQPYLALGCITARQVHQELLKLECGTDPGLAQTMGFGRGRSAGTRSIRYHLLV 358
Query: 435 RDFFRFITKKYSS 447
+F R K+ S
Sbjct: 359 LNFIRLSIIKHGS 371
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 134/321 (41%), Gaps = 31/321 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
S+ WFR DLR+ DN +L+ A S V+P Y + K+ + TGP R FL +
Sbjct: 7 VSLHWFRRDLRLTDNTALHAAQTASTQVIPFYVLS--SWKKAHAW---TGPNRQHFLCGN 61
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L KNL+A GS L++R G+ + + L + GA A+Y +R+ E + A
Sbjct: 62 LESLAKNLEAIGSRLIIRSGETVSEIERLIRETGATALYTNRDPDPYGQTIETHVIALCN 121
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G+ + L+ ++ + N G +R + ++ L + + G
Sbjct: 122 KLGVAFHTCKDAVLHQPQEV------LTGNGGPYRVFTPYSKNWLSLPKAQPLSKVRTLG 175
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
D I SL WH +P A GE A R+K F + P+
Sbjct: 176 DAPSPKIKSL-------PLPTVVHWHLPEPTATLPTPGEKAARDRMKTFVDSVRL--PRY 226
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
+ N S+ G + ++SP L G +S R ++ ++ G ++ +G
Sbjct: 227 EETRNFPSVPG---TSQLSPDLRYGLISIRELYHRCQQALA--------QAGGQPAAQSG 275
Query: 425 SNWLMFELLWRDFFRFITKKY 445
N + EL WR+F+ + Y
Sbjct: 276 INTYIKELAWREFYMAVLHFY 296
>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 694
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 137/328 (41%), Gaps = 71/328 (21%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTA----------NNESVSVLPVYCFDPRDYGKSS 167
N A +R +IVWFR DLR+HDN +L+ A +E +++LP+Y
Sbjct: 91 NVALPKRRAIVWFRRDLRIHDNLALDAAMRAQMQLQKAGDEEMALLPIYIL-------HR 143
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE 227
+ GP R FL+E++ DL +++ L+V G E VL + A G ++
Sbjct: 144 PKRQRCGPVRFQFLLEAIEDLARSIAKLDGRLLVLSGDAEEVLRTVIAAWGVTDLFFEAG 203
Query: 228 VSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVE 286
V+H V + ++ A K + V G TLY+ + + G+ PT+Y E + +
Sbjct: 204 VAHYAVDRDNRVRAIAKSLDVNVTTIRGVTLYNPHEIIRLNSGQAPTDYERLLEITEKMP 263
Query: 287 ------------IRKTIEALDQLKGL--------PSRGDV---EPGDI----------PS 313
+ + D+L L PS DV GD+ P
Sbjct: 264 QPTQPIPAPVKLLNAACFSTDKLFSLLEDVCQQNPSEADVIAGVAGDVKKTESELFVAPP 323
Query: 314 LLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY----QAQPPKGNKDGN 369
L GL+ P A + GGE+ A++RL F + Q + PK +
Sbjct: 324 LTAFGLTPPT----------PHA-PLIGGESAAMKRLDDFCEDERRVGQFEKPKTSP--- 369
Query: 370 HDSIYGANFSCKISPWLAMGCLSPRSMF 397
SI G + + +S +L+ GCLS R F
Sbjct: 370 -VSIDGPS-TTTLSAYLSFGCLSAREFF 395
>gi|383775319|ref|YP_005459885.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
gi|381368551|dbj|BAL85369.1| putative deoxyribodipyrimidine photolyase [Actinoplanes
missouriensis 431]
Length = 443
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 142/322 (44%), Gaps = 52/322 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++V F DLRVHDN +L A + V+P+Y DP G S + R+ FL + +
Sbjct: 4 AVVLFTRDLRVHDNPALAEACAGAERVIPLYVLDPTLAGLSGN--------RSRFLHQCL 55
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR+ L+ RG DLVVR G P + +A+ A ++ +VS + E ++ +
Sbjct: 56 ADLREQLRERGGDLVVRTGDPVAEAIRVAREHDAATIHLAADVSGYARRRERRLTDEGER 115
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEA-LDQLKGLPSR 303
I V+ G T+ +D + G Y F + + R EA + Q LP
Sbjct: 116 HRIAVRLHPGVTV--VDPGVLRPGGGGDCYKVFTPYFRIWSQTRWRAEAPVPQRVTLPD- 172
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
+ G +P++ D G P ++ +GGET +RL + +
Sbjct: 173 -GIAAGHLPAIPD--------------GDSP--HAAEGGETVGRRRLTAWLSSIDGYGID 215
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
D HD + A+ + ++SP+L GCLSP +++ A++ D E+
Sbjct: 216 AYPD-VHDDL-PADRTSRLSPYLRWGCLSP-----------LALAEAARTRDAEA----- 257
Query: 424 GSNWLMFELLWRDFFRFITKKY 445
+ +L WRDF+ + + +
Sbjct: 258 ----FVRQLCWRDFYYQVARVF 275
>gi|349805341|gb|AEQ18143.1| putative cryptochrome dash [Hymenochirus curtipes]
Length = 168
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 65/106 (61%), Gaps = 17/106 (16%)
Query: 341 GGETEALQRLKKFAAEYQAQPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE 399
GGET+ALQRL + + PP K ++G + G ++S K++PWLA+GC+SPR ++++
Sbjct: 41 GGETQALQRLHHYFWDTNLVPPYKDTRNG----LIGLDYSTKLAPWLALGCVSPRFIYEQ 96
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+KK + ++ + W++FELLWRD+FRF+ KY
Sbjct: 97 IKKYE------------QERTANQSTYWVIFELLWRDYFRFVALKY 130
>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
Length = 471
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 147/343 (42%), Gaps = 71/343 (20%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFD-------PRDYGKSSSGFDKTGPY 176
R ++VW R DLR+ D+ + A S +VLPV+ FD PRD D+
Sbjct: 6 RTALVWLRRDLRLDDHAAFYHALKHSEAVLPVFVFDASILAALPRD--------DR---- 53
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R F+ +S + L+ L G DL++R G P+ + LA +GA+AV+ +R+ +
Sbjct: 54 RVDFIWQSAAALKAELNQLGGDLLIRHGLPQHEIPRLAAELGAEAVFCNRDYEPAARARD 113
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---------KVKGVEI 287
++ + ++G+ + ++ D++ G+ + + ++ ++ +
Sbjct: 114 AEVAQRLAEQGVAFRDSKDQVIFETDEVLTGAGKPFSVFTPYKNAWLKKLTPFHLQAYPV 173
Query: 288 RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEAL 347
R+ ++AL +P EP +PSL D+G S S G A ++ +
Sbjct: 174 RRYLDAL-----MPR----EPQSMPSLADIGFLPSDLASLPVKAGAAGAEALFADFAGRI 224
Query: 348 QRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
+R Y+AQ + + G ++ +S L G LS R +
Sbjct: 225 ER-------YKAQ-------RDFPGVKGVSY---LSVHLRFGTLSIRRL----------- 256
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
AA W+DG G+ WL EL+WRDF++ + A K
Sbjct: 257 -AAYAWHDGGEGA----MTWLS-ELIWRDFYQQVLWHRPDAAK 293
>gi|433460771|ref|ZP_20418395.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432191119|gb|ELK48100.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 497
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 134/294 (45%), Gaps = 50/294 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESV 185
+VWF+ DLR+HD+ L A VLP+Y +P + G+ S F+ ES+
Sbjct: 4 VVWFKRDLRLHDHAPLYNAVQSGDMVLPLYVAEPSIWQGQELSA------RHYQFVKESL 57
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS-EEKIEAAMK 244
DL+K L+ RG L V VG+ ETVL E+ + G +++AH E S ++++ + MK
Sbjct: 58 HDLQKELKQRGGRLFVAVGEMETVLEEIYETYGPFSLHAHEENGTPVTFSRDQRVRSWMK 117
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+G+ +K +D PF + + GF E+ + +++ +P +
Sbjct: 118 QKGLTMK----------EDQPFGVFRGLNSRDGFSERWEQFMKHPVFPVPEKIPCVPEK- 166
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF-------AAEY 357
S+L L L Q + ++ GG KGG EA + L F + +
Sbjct: 167 -------ESVLTLNLDQ---LDSLYVGGSTLDKGQKGGVEEAHRTLDSFLRVRFHSYSYH 216
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
++P K + G+ ++SP+LA G +S R + +++T I A S
Sbjct: 217 ISKPLKSARSGS-----------RLSPYLAWGNISLRFV---VQQTWMKIRACS 256
>gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
Length = 499
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 143/331 (43%), Gaps = 49/331 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIES 184
+VWFR DLR+HDN +L A ++ + DP + P RAS +L S
Sbjct: 11 LVWFRRDLRLHDNPALWAAVRSGRPLVCAFIDDP-------DAVAQLAPGRASRWWLHHS 63
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++ L ++++ RG LV+R G + LV L G+ V+ +R + + + A +
Sbjct: 64 LAALSRSIRQRGGQLVLRRGDTTSELVRLCGETGSSEVFWNRGDNPTRDSGDTALAARLA 123
Query: 245 DEGIEVKYFWGSTLY----HLD--DLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
D G++ + F TL+ HL+ P+++ T + ++ ++ E + A D+L
Sbjct: 124 DRGVKARGFASGTLFNPATHLNGSGKPYRVF---TPF--WKACLRAPEPSAALPAPDRLP 178
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
G D SL ++ SQ W + GE AL RL+ F A
Sbjct: 179 GAAVTASDNLEDW-SLRPQAPDWASGFSQDW----------EPGEDGALNRLEAFLANEL 227
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
A P+ + D + ++SP LA G +SPR+++ ++ A E
Sbjct: 228 ADYPQSRDRPDEDG------TSRLSPHLAWGEISPRTIWHTVRDHA------------ER 269
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSSAK 449
G S G + EL WRDF ++ + S +
Sbjct: 270 GGSFQGGEKFLSELGWRDFAIYLAHHFGSLR 300
>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
Length = 558
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 141/331 (42%), Gaps = 60/331 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I FR LR+HDN SL A S ++ PVY D R + + G G R FL++S+
Sbjct: 5 TIHLFRKGLRLHDNPSLLGALASSSALYPVYVLD-RVFLQ---GAMHMGALRWRFLLQSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL LQA GS L V G +L EL G + EV + ++ I+ ++
Sbjct: 61 EDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQE 120
Query: 246 EGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGV---EIRKTIEALDQLKGLP 301
G++ TLY + + G P Y F + + E +++ +
Sbjct: 121 NGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQRCV 180
Query: 302 SRGDVE-PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
+ DV+ +PSL LGL A + +W GGE+ ALQRL+K +Q+Q
Sbjct: 181 TPVDVDRVYAVPSLAHLGLQVEAEV--LW----------PGGESHALQRLEK---HFQSQ 225
Query: 361 PPKGNKDGNHDSIYGANFS-------------CKISPWLAMGCLSPRSMFDELKKTATSI 407
+ ANFS +SP+L++GCLS R+ + L I
Sbjct: 226 G------------WVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRLN----CI 269
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
A SK N S G ++LWR+FF
Sbjct: 270 YAQSK-NHSLPPVSLQG------QVLWREFF 293
>gi|86196738|gb|EAQ71376.1| hypothetical protein MGCH7_ch7g783 [Magnaporthe oryzae 70-15]
Length = 793
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 157/380 (41%), Gaps = 52/380 (13%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNES----VSVLPVYCF-----------------D 159
A R I FR DLRV DN L+ + +LPVY F
Sbjct: 2 APRNVLIYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKS 61
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
P +S +G+ + GPYRA F+ ++V D++ +L++ S L++R+G + VL L +
Sbjct: 62 PYPEARSKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLK 121
Query: 219 AD----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGE---M 271
A +V+ E +E++ E I + G + + Y +DD E +
Sbjct: 122 ARGDTCSVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEK-YFIDDRDLNFAEPQEL 180
Query: 272 PTNYGGFREKVKGVE--IRKTIEA--LDQLKGLPSRGDV----EPGDIPSLLDLGLSQSA 323
P + +R+ V+ + RK++ D L P + P IP + G +
Sbjct: 181 PGIFTDYRKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYE-GFETAL 239
Query: 324 AMSQVWHGGKP---------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIY 374
G P A+ KGGET +RL+ + + K +++G +
Sbjct: 240 LKPVKDFSGAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNG----LI 295
Query: 375 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 434
G +FS K+S +LA GC++ R + + L +A + +G + + EL+W
Sbjct: 296 GPDFSTKLSAYLAQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMW 355
Query: 435 RDFFRFITKKYSSAKKVVEA 454
RD+ R +K VE
Sbjct: 356 RDYMRLYARKIKEKLYSVEG 375
>gi|398866188|ref|ZP_10621688.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM78]
gi|398241525|gb|EJN27175.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM78]
Length = 488
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 143/338 (42%), Gaps = 57/338 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L+ A +V VY P + + P + F + ++
Sbjct: 10 LIWLRSDLRVHDNTALSAAAACGPTV-AVYLLSPEQWREHDDA-----PCKVDFWLRNLQ 63
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L L L++R VL+EL + + DAV+ + E E + + +
Sbjct: 64 VLSGALGQLNIPLLIRNAPRWDDAPNVLLELCRQLQIDAVHFNEEYGIHETRRDAAVAQT 123
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-EALDQ-LKGL 300
++ EGIEV+ + LD L FK G + T G + + + RK E L L GL
Sbjct: 124 LEAEGIEVRRY-------LDQLLFKPGSVLTKTGSYFQVFS--QFRKVCHERLHHSLPGL 174
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK----GGETEALQRLKKFAA- 355
+ L ++ A ++V G P +S++ GE EA +RL F
Sbjct: 175 VRTPAAQAA-------LNIASDAIATRV-EGFDPPPDSLRELWPAGEDEARRRLDSFTEM 226
Query: 356 ---EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
YQ++ K G + ++S +LA G +SPR + AA +
Sbjct: 227 QIDYYQSERDFPAKPG----------TSQLSAYLAAGVISPRQ----------CLHAAMQ 266
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
N GE S G+ + ELLWR+F++ I Y +
Sbjct: 267 SNQGEIESGKVGAVTWINELLWREFYKHILVGYPRVSR 304
>gi|410089563|ref|ZP_11286177.1| deoxyribodipyrimidine photolyase [Pseudomonas viridiflava
UASWS0038]
gi|409763098|gb|EKN48083.1| deoxyribodipyrimidine photolyase [Pseudomonas viridiflava
UASWS0038]
Length = 482
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 143/329 (43%), Gaps = 49/329 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLRVHDN +L+ A E L VY + +S D + F + ++
Sbjct: 3 LLWLRTDLRVHDNTALSAA-MERGPTLAVYLISSAQW-QSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L K L L++R K VL +L K +AV+A+ E +E + +E ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDKAPEVLSKLCKQFKIEAVHANEEYGINETRRDEAVQKT 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++D G+ + HLD L FK G + T G + + + K V + EA+ +
Sbjct: 117 LEDAGVHFQ-------SHLDQLLFKPGSVLTKTGNYFQVFSQFKKVCYSRLHEAMPRTVR 169
Query: 300 LPSRGDVEPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P D P IP + + S A+ +W PA GE EA +RL +F +
Sbjct: 170 TPKPQDSLPTKSDAIPEAVKGFSAPSEALRNLW----PA------GEDEAHRRLSEFTDD 219
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K +D + + ++S +LA G +SPR + AA N G
Sbjct: 220 -QIHYYKTERD-----LPAKPGTSQLSAYLAAGVVSPRQ----------CLHAALTSNHG 263
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E + GS + ELLWR+F++ Y
Sbjct: 264 EFETGSEGSVTWINELLWREFYKHTLVGY 292
>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 472
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 130/279 (46%), Gaps = 28/279 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR DLR+ DN +L+ A VLPVY FD G S G +L S++
Sbjct: 8 IVWFRRDLRLADNPALSEALASGEPVLPVYVFDEEGEGDSPDGAASKW-----WLHHSLA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++L+ GS LV+ G ++ LVEL + +GA AV+ +R V+ + +I+ ++ D
Sbjct: 63 SLDESLKGLGSRLVLLRGSSKSALVELCREMGARAVFWNRRYEPAVVERDTEIKKSLVDC 122
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI---EALDQLKGLPSR 303
G++ + F GS + + K G + F + ++ + R + +AL K LP
Sbjct: 123 GVQARSFNGSLMQSPLSVANKSGTPFKVFTPFWKHIQNLSTRTPLAKPDALTTPKSLPKG 182
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
+E ++ LS + ++ W G+ KG E K AA+Y
Sbjct: 183 ESLESFELLPR----LSWADGFNEEWIPGE------KGAEKALSLFAKGGAAKYA----- 227
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 402
KD + S+ G + ++SP L G +SP ++ L +
Sbjct: 228 --KDRDTPSVRGVS---RLSPHLHFGEISPNQIWHALDR 261
>gi|389646117|ref|XP_003720690.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
gi|351638082|gb|EHA45947.1| hypothetical protein MGG_03002 [Magnaporthe oryzae 70-15]
Length = 826
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 157/380 (41%), Gaps = 52/380 (13%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNES----VSVLPVYCF-----------------D 159
A R I FR DLRV DN L+ + +LPVY F
Sbjct: 58 APRNVLIYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKS 117
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
P +S +G+ + GPYRA F+ ++V D++ +L++ S L++R+G + VL L +
Sbjct: 118 PYPEARSKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLK 177
Query: 219 AD----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGE---M 271
A +V+ E +E++ E I + G + + Y +DD E +
Sbjct: 178 ARGDTCSVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEK-YFIDDRDLNFAEPQEL 236
Query: 272 PTNYGGFREKVKGVE--IRKTIEA--LDQLKGLPSRGDV----EPGDIPSLLDLGLSQSA 323
P + +R+ V+ + RK++ D L P + P IP + G +
Sbjct: 237 PGIFTDYRKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYE-GFETAL 295
Query: 324 AMSQVWHGGKP---------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIY 374
G P A+ KGGET +RL+ + + K +++G +
Sbjct: 296 LKPVKDFSGAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNG----LI 351
Query: 375 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 434
G +FS K+S +LA GC++ R + + L +A + +G + + EL+W
Sbjct: 352 GPDFSTKLSAYLAQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMW 411
Query: 435 RDFFRFITKKYSSAKKVVEA 454
RD+ R +K VE
Sbjct: 412 RDYMRLYARKIKEKLYSVEG 431
>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
Length = 477
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 141/317 (44%), Gaps = 39/317 (12%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
W R DLR+ DN +L A +S V+ ++C DP K + P R +L+ +++L
Sbjct: 8 WHRRDLRLQDNVALAEARQQSAKVVGIFCLDPAILEK-----EDVAPARVKYLLACLAEL 62
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
+N Q GS L++ G P VL ++A+++ VY + +V + + ++ A++ G
Sbjct: 63 AENYQKAGSQLLIFQGNPLEVLPKVAESLKVHTVYWNLDVEPYAQQRDHQMAIALRQVGA 122
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTN-YGGFREKVKGVEIRKTIEALDQLKGLPS----- 302
+++ FW L H F + P + Y F + + AL +GL
Sbjct: 123 KIETFWDQLL-HAPGKVFTQSKKPYSVYSPFWKNWSQKSKAAPVTALRDCQGLSDAEQKL 181
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
D+ +P+L DLG S KP ++ GET +L +L +F +
Sbjct: 182 AKDLGAIALPTLADLGFSWD----------KPF--TVPVGETASLGQLDRFTENF---IE 226
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K + D N + G + ++S L G + R+++ + T T++ N S +
Sbjct: 227 KYDGDRNFPATDG---TSRLSAALKFGAIGIRTVW---QATETAL------NHCRSKEAE 274
Query: 423 AGSNWLMFELLWRDFFR 439
AG EL WR+F++
Sbjct: 275 AGVITWQQELAWREFYQ 291
>gi|410944062|ref|ZP_11375803.1| deoxyribodipyrimidine photolyase [Gluconobacter frateurii NBRC
101659]
Length = 483
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 136/316 (43%), Gaps = 37/316 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR DLR+ D+ +L A ++ +Y D + G +L +++
Sbjct: 14 IVWFREDLRLSDHLALQAALATGQPLICLYVLD-----DETPALHSLGGASRWWLHGALA 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DLR+ L L++ G E ++ +LA+ GA +VY H + E + +E+I A+K +
Sbjct: 69 DLRRTLGRHQGTLLMLKGSAEKLVPQLARETGAQSVYWHHRLHQKEREQDERIAIALKTQ 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G + WG+ L + K G + F + + ++ + + G P+
Sbjct: 129 GAAAEGSWGTVLLDPAQVQTKEGRFYQVFTTFWKAFQAQDVPEPL-------GSPANLSF 181
Query: 307 EPGDIPSLLDLGLSQSAAMSQV--WHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
P L L +S + W G A S + GE EA + L+ F ++ KG
Sbjct: 182 YPLSDSLLAQYWLDESTLLPTHPDWAAGLRA--SWEPGEKEAHEHLEDFVRHDCSRYGKG 239
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
+ + + + ++SP+LA G +SPR ++ L+K G+ G
Sbjct: 240 RDELSREG------TSRLSPYLASGAISPRQIWAALQK---------------KGAHDEG 278
Query: 425 SNWLMFELLWRDFFRF 440
+ + E+ WR+F ++
Sbjct: 279 ARIFLSEIGWREFAKY 294
>gi|440472686|gb|ELQ41536.1| cryptochrome DASH [Magnaporthe oryzae Y34]
gi|440482685|gb|ELQ63153.1| cryptochrome DASH [Magnaporthe oryzae P131]
Length = 770
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 157/380 (41%), Gaps = 52/380 (13%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTANNES----VSVLPVYCF-----------------D 159
A R I FR DLRV DN L+ + +LPVY F
Sbjct: 2 APRNVLIYLFRKDLRVSDNPILHGLATQKDHGFTHLLPVYIFPANHIEISGFISDQSEKS 61
Query: 160 PRDYGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218
P +S +G+ + GPYRA F+ ++V D++ +L++ S L++R+G + VL L +
Sbjct: 62 PYPEARSKVAGYWRCGPYRAKFISQAVWDVKNSLESINSGLLLRLGSFQDVLEGLLDGLK 121
Query: 219 AD----AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGE---M 271
A +V+ E +E++ E I + G + + Y +DD E +
Sbjct: 122 ARGDTCSVWMVGEEGLEEIQDEISISNVCRTRGYDFEKLVDEK-YFIDDRDLNFAEPQEL 180
Query: 272 PTNYGGFREKVKGVE--IRKTIEA--LDQLKGLPSRGDV----EPGDIPSLLDLGLSQSA 323
P + +R+ V+ + RK++ D L P + P IP + G +
Sbjct: 181 PGIFTDYRKSVEPLRERPRKSLPTPEKDSLPPFPEPDTIAEQSRPFSIPDTYE-GFETAL 239
Query: 324 AMSQVWHGGKP---------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIY 374
G P A+ KGGET +RL+ + + K +++G +
Sbjct: 240 LKPVKDFSGAPFPEHAENATTAHPFKGGETAGQERLQYVMSSGIIKDYKTSRNG----LI 295
Query: 375 GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLW 434
G +FS K+S +LA GC++ R + + L +A + +G + + EL+W
Sbjct: 296 GPDFSTKLSAYLAQGCITARQIHESLLAYEDGSAAELEEIEGYGQGENINTKSVREELMW 355
Query: 435 RDFFRFITKKYSSAKKVVEA 454
RD+ R +K VE
Sbjct: 356 RDYMRLYARKIKEKLYSVEG 375
>gi|359782589|ref|ZP_09285809.1| deoxyribodipyrimidine photolyase [Pseudomonas psychrotolerans L19]
gi|359369409|gb|EHK69980.1| deoxyribodipyrimidine photolyase [Pseudomonas psychrotolerans L19]
Length = 473
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 153/336 (45%), Gaps = 59/336 (17%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+ +VWFR DLR D+ +L+ A E V+ V+ P + + K F + +
Sbjct: 2 SQLVWFRTDLRTLDHPALHAAT-EQGPVVAVFLLSPAQWQEHDEAAVKV-----DFWLRN 55
Query: 185 VSDLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+++L K L + G L+VR + VL+ELA+ +G + ++ + E +E ++ +
Sbjct: 56 LAELGKTLGSLGIPLLVRSAERWEQAPQVLLELARELGVEHLHFNDEYGVNEAARDDAVA 115
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA-----LD 295
A + G+ +T +LD F G + T GG+ KV G + RKT A L
Sbjct: 116 EAFEAAGL-------TTHRYLDQTLFAPGTVLTKSGGYF-KVFG-QFRKTCLARLETSLP 166
Query: 296 QLKGLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
L P++ V+ D+P+ + + A + Q+W PA GE ALQRL+
Sbjct: 167 TLLPAPNKQKKNLVQADDLPTSVAGFAAIPAEVKQLW----PA------GEEAALQRLQA 216
Query: 353 FAAEYQAQPPKGNKDGNHDS--IYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
F + + + H + I + ++S +L G L+PR + AA
Sbjct: 217 FIHD--------DLEDYHQARDIPSEPGTSQLSAYLNAGVLTPRQ----------CLQAA 258
Query: 411 SKWNDGE-SGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ NDG SG S + W+ ELLWR+F+R + Y
Sbjct: 259 VRANDGLLSGGSQGAATWIT-ELLWREFYRHVLVGY 293
>gi|332534683|ref|ZP_08410514.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas haloplanktis ANT/505]
gi|332035895|gb|EGI72377.1| deoxyribodipyrimidine photolyase, single-strand-specific
[Pseudoalteromonas haloplanktis ANT/505]
Length = 435
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 136/314 (43%), Gaps = 37/314 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W +NDLR+ DN + ++ ++ V+ +P + ++ G ++ FL++S+
Sbjct: 6 LYWLQNDLRLTDNAIFSDLASQQCALDIVFVINPHWFKNNNYQQKSYGVHKQQFLMQSLY 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ L RG L V G+P +VL D V + E + ++A +
Sbjct: 66 ELQQALIERGQTLHVLEGEPVSVLKARINEQNIDEVVYSEQFGLYEQRQINLLKAHCPN- 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
+ TL+ DLPF L E+P ++ FR+KV+ + L LP+
Sbjct: 125 -VRFTGAQQDTLFKQSDLPFDLSELPKHFTPFRKKVEAA------TSPISLSTLPN---- 173
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
G +P + L + ++ + G M GG A L+++ + P K
Sbjct: 174 --GLLPQ--PITLCAKKPLERIANNG-----VMHGGFKSAQTHLEQY---FSGLLPSTYK 221
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
+ + G N + K S WLA GC+S R ++ ++ + + +
Sbjct: 222 I-TRNELDGFNNTTKFSTWLAFGCVSARQVYKAVEAYE------------HNQITNESTY 268
Query: 427 WLMFELLWRDFFRF 440
W+ FELLWR++F++
Sbjct: 269 WIKFELLWREYFKW 282
>gi|333926094|ref|YP_004499673.1| deoxyribodipyrimidine photo-lyase [Serratia sp. AS12]
gi|333931047|ref|YP_004504625.1| deoxyribodipyrimidine photo-lyase [Serratia plymuthica AS9]
gi|386327917|ref|YP_006024087.1| deoxyribodipyrimidine photo-lyase [Serratia sp. AS13]
gi|333472654|gb|AEF44364.1| Deoxyribodipyrimidine photo-lyase [Serratia plymuthica AS9]
gi|333490154|gb|AEF49316.1| Deoxyribodipyrimidine photo-lyase [Serratia sp. AS12]
gi|333960250|gb|AEG27023.1| Deoxyribodipyrimidine photo-lyase [Serratia sp. AS13]
Length = 476
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 149/324 (45%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A + + VL V+ P + + + P +A+F+ ++
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQH-----EMAPRQAAFIHANL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEA 241
+++ L RG LV + V+ A A DA++ +R+ +E+K +++ +
Sbjct: 60 LQVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVDALFYNRQYEFNELKRDQQAQR 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + GEM Y FR+ I++ E+ ++ LP
Sbjct: 120 RLSGQVI-CQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAF----IQRLTES--DVRSLP 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ E G +P SA + + GE ALQRL+ F E Q Q
Sbjct: 173 APKLREGGVLPV--------SAVPAAFDYPQAEVGVDFPAGEDAALQRLRAFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+D +I G + +SP+LA+G LSPR F+ L+ + + +SG+
Sbjct: 224 YLQQRD--FPAIAGTS---SLSPYLAIGVLSPRQCFNRLRAECPQVL-----ENSDSGAF 273
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
G WL EL+WR+F+R + Y
Sbjct: 274 G----WLN-ELIWREFYRHLMVAY 292
>gi|421782185|ref|ZP_16218644.1| deoxyribodipyrimidine photolyase [Serratia plymuthica A30]
gi|407755741|gb|EKF65865.1| deoxyribodipyrimidine photolyase [Serratia plymuthica A30]
Length = 476
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 150/324 (46%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A + + VL V+ P + + + P +A+F+ ++
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQH-----EMAPCQAAFIHANL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEA 241
+++ L RG LV + V+ A A +A++ +R+ +E+K +++ +
Sbjct: 60 LQVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQR 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + GEM Y FR+ I++ E+ ++ LP
Sbjct: 120 RLSGQVI-CQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAF----IQRLTES--DVRSLP 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ E G +P S A + + A GE ALQRL+ F E Q Q
Sbjct: 173 APKRREGGALPV--------SVAPAAFDYPQVEAGADFPAGEDAALQRLRAFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+D +I G + +SP+LA+G LSPR F+ L+ + + +SG+
Sbjct: 224 YLQQRD--FPAIAGTS---SLSPYLAIGVLSPRQCFNRLRAECPQVL-----ENSDSGAF 273
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
G WL EL+WR+F+R + Y
Sbjct: 274 G----WLN-ELIWREFYRHLMVAY 292
>gi|372281898|ref|ZP_09517934.1| deoxyribodipyrimidine photo-lyase [Oceanicola sp. S124]
Length = 472
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 138/324 (42%), Gaps = 64/324 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR D+E+L A V+PV+ D S +G R + + +
Sbjct: 6 LLWIRRDLRTTDHEALAAACKRGGPVIPVFIRD-----DSVTGLGAAPALRLDLGLAAFA 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ +GS L++R G P VL +LAK GA AVY R +K + +++ A++++
Sbjct: 61 ---ARLKEKGSRLILRSGNPLEVLRDLAKETGAGAVYWQRLYDPAAIKRDSRVKTALRED 117
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G++ + F G L+ + G Y F + V+G ++ + A
Sbjct: 118 GLDAESFAGHLLFEPWTVETGQGGFYKVYSPFWKAVRGRDVGPALSA------------- 164
Query: 307 EPGDIP---------SLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA--- 354
P DIP +L D L SA M + G A + GE A Q+L FA
Sbjct: 165 -PSDIPAPDAWPDSEALADWQL--SAPMRR---GRAVVAAHVTPGEQAAQQQLALFARDR 218
Query: 355 -AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
A+Y+ Q +++G D +S L +G +SPR + + W
Sbjct: 219 IADYKDQRDFPDREGTSD----------LSHHLTVGEISPRQCWH------------AGW 256
Query: 414 NDGESGSSGAGSNWLMFELLWRDF 437
E G GA + + E++WR+F
Sbjct: 257 RALEEGKPGAET--FLKEVVWREF 278
>gi|335436625|ref|ZP_08559418.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
gi|334897588|gb|EGM35719.1| deoxyribodipyrimidine photo-lyase [Halorhabdus tiamatea SARL4B]
Length = 470
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 136/316 (43%), Gaps = 43/316 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS--VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
I W R DLRV DN L N E+ VLP + FDP + GP R + L+E+
Sbjct: 3 IHWHRRDLRVADNRGLAGDNIEAGEGPVLPAFVFDP-------AVLAHAGPPRVAALLEA 55
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
VS+LR + RGSDLVV G P+TVL LA GA+ V +R+ + K + + A+
Sbjct: 56 VSELRDAYRERGSDLVVARGDPQTVLPTLADEFGAERVTWNRDYTRLGRKRDAAVREALD 115
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
D G+E + L+ + G+ + F +K + E ++A
Sbjct: 116 DAGVERAAVHDAVLHEPGTIRTNDGDPYQVFTYFWKKWRDREKSPAVDAPAPAALADVED 175
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE--YQAQPP 362
D +P+L DL + + PAA+ T A +RL F AE Y+ +
Sbjct: 176 DTP---VPTLADLSVDE------------PAASLPTVTSTAARERLADFCAEDIYRYE-- 218
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+D D + ++S LA G + R +++ AT + A +D E S
Sbjct: 219 -DRRDYPADGC-----TSRLSQHLAYGTIGIREVYE-----ATEEAYARSDSDAERESVR 267
Query: 423 AGSNWLMFELLWRDFF 438
+L WR+F+
Sbjct: 268 E----FQSQLAWREFY 279
>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
Length = 621
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 135/322 (41%), Gaps = 47/322 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFR LR+HDN +L A + V PV+ DP +SS K G R +FL+ES+
Sbjct: 7 SILWFRKGLRLHDNPALLEACRGAAHVYPVFILDPFFLQQSSY---KVGVNRYNFLLESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL + ++RGS L+V GKPE V + + + + + +I+ +
Sbjct: 64 RDLDASFRSRGSRLLVLRGKPEEVFPRVFREWRITQLCFEVDTEPYARVRDARIQGLADE 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG---FREKVKGVEIRKTIEALDQLKGLPS 302
G+ V TLY G GG ++EK R+ + PS
Sbjct: 124 AGVAVWTAVSHTLYVGLFCSCTAGRHGPVLGGCWLWKEKAPAPGGRRG----PACENAPS 179
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KKFAAE 356
D +P+ ++G +++ KGGETEAL+RL K+ A+
Sbjct: 180 -TDAATTAVPTWQEVGFTEA------------PTTIFKGGETEALKRLSASLADSKWVAD 226
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
++ K + + + +SP++ GCLSPR L + + G
Sbjct: 227 FK-------KPDTDPAAFERPATTVLSPYVKFGCLSPRLFHARLLEVYRR-------HRG 272
Query: 417 ESGSSGAGSNWLMFELLWRDFF 438
S + L +LLWR+FF
Sbjct: 273 HSQPPVS----LRGQLLWREFF 290
>gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
Length = 469
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 140/333 (42%), Gaps = 61/333 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VW RNDLR+ D +L A E SVL V+C R + + R FL+ ++
Sbjct: 2 NLVWLRNDLRISDQRALGAAAAEGGSVLAVFCLCQRQWQRH-----HMAAVRRDFLLRNL 56
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
LR LQA G L V PE L++LA+ GA ++ + E + DE + + +E
Sbjct: 57 ECLRLQLQAVGIPLFVLDCHDFAAVPEA-LLKLARTTGARRLFFNEEYAIDEWRRDMAVE 115
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEAL------ 294
++ G+EV+ + L GE + F++ + + AL
Sbjct: 116 RCFRENGMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENP--ALLAPAPI 173
Query: 295 --DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
Q P G P DIP P A+ GE EA +RL+
Sbjct: 174 VNTQPHPFPGDGAALPTDIP--------------------HPLAHLWPAGEAEAQRRLQA 213
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
F + + D + +I G + +SP+LA G LS R +SAA +
Sbjct: 214 F---LDGPIRRYHLDRDFPAIEGTS---ALSPYLACGVLSIRQ----------CVSAALE 257
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+G GS GA WL EL+WR+FF+ I + +
Sbjct: 258 LANG--GSEGA-RVWLS-ELIWREFFQHILRAF 286
>gi|354568677|ref|ZP_08987840.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
gi|353539931|gb|EHC09411.1| deoxyribodipyrimidine photo-lyase, 8-HDF type [Fischerella sp.
JSC-11]
Length = 480
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 136/326 (41%), Gaps = 52/326 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L TA S V+ V+C DP + D P R +++I +
Sbjct: 6 LFWHRRDLRISDNTGLATARQRSAKVVGVFCLDPNILER-----DDVAPVRVTYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+K GS L++ P + LA A+GA AV+ + +V + + I +A+K++
Sbjct: 61 ALQKRYAQAGSQLLILHAHPTQAIPALAVALGAKAVFWNWDVEPYSQERDRTIISALKEK 120
Query: 247 GIE-VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR-- 303
GIE ++ W L+ +D+ + T Y F + + + L+ +GL +
Sbjct: 121 GIEFLENNWDQVLHAPEDIRTGSNQPYTVYTPFWKNWISKPKAEPVATLENAEGLTEKEK 180
Query: 304 ------GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA--- 354
G + +PS DLG VW G A GE A +RL++F
Sbjct: 181 EIAKSAGVIA---LPSAKDLGF--------VWDGELIIA----PGEQAAQERLEEFCDRA 225
Query: 355 -AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
EYQ Q DG + ++S L G + R ++ ++ W
Sbjct: 226 INEYQEQRNFPAVDG----------TSRLSAALKFGAIGIRRVWQATQQV---------W 266
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFR 439
+ S + + EL WR+F++
Sbjct: 267 ENSRSEETQSNIRTWQQELAWREFYQ 292
>gi|426411468|ref|YP_007031567.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. UW4]
gi|426269685|gb|AFY21762.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. UW4]
Length = 480
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 145/342 (42%), Gaps = 49/342 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+TA V VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSTAAARGPCV-AVYLLSPEQWLEHDD-----APCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R +VL+ L + DA++ + E E + + +
Sbjct: 57 ELSRELGQLNIPLLIRQAPRWDDAPSVLLNLCRQWQVDALHLNDEYGIHESRRDAAVVRT 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ EGIEV + LD L FK G + T G + + + + V + AL L
Sbjct: 117 LQAEGIEVHRY-------LDQLLFKPGSVLTRTGTYFQVFSQFRKVCYERLHHALPSLVR 169
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P + ++ IP ++ + + +W PA GETEA +RL F +E
Sbjct: 170 APYKQAPLNIASDAIPLSVEGFATPGDHLRSLW----PA------GETEARRRLDNF-SE 218
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q + + +D + ++S +LA G +SPR + AA N G
Sbjct: 219 AQIEHYQNERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALNSNQG 263
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPAT 458
E S G+ + ELLWR+F++ I Y + P T
Sbjct: 264 EFESGNTGAVTWINELLWREFYKHILVGYPRVSRHRAFRPET 305
>gi|156055622|ref|XP_001593735.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980]
gi|154702947|gb|EDO02686.1| hypothetical protein SS1G_05163 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 651
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 160/379 (42%), Gaps = 77/379 (20%)
Query: 127 IVWFRNDLRVHDNESLNT----ANNESVSVLPVYCFD----------PRDYGKSS----- 167
I R DLRV DN L++ ++ +LP+Y F P D GKS
Sbjct: 8 IYLMRRDLRVADNPILHSLIHNKDHGFTHLLPLYVFAAQQIEVSGFIPEDGGKSPYPEAR 67
Query: 168 ---SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI--GA--- 219
F + GP+RA FL +SV DL+ + GS L +RVG + ++ L + GA
Sbjct: 68 SQLGAFWRCGPHRAKFLAQSVWDLKDGFEKIGSGLSIRVGMVDEIVKGLIERFEEGAGSK 127
Query: 220 -DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD--DLPFK----LGEMP 272
AV+ E +E + E + G++ K W Y +D DLPF+ L ++
Sbjct: 128 VSAVWMTSEEGVEEKREERSTKKICDKAGVDFK-LWQDEKYFVDDRDLPFEDPKDLSDIY 186
Query: 273 TNYGGFREKVKGVEIRKTIEALD----------QLKGLPSR-GDVEPGDIPSLLDLGLSQ 321
T Y RK++E L ++ LP DV P P ++ +
Sbjct: 187 TTY------------RKSVEPLRNAPRPDLPKPEMNSLPPFPTDVPPQHSPFVIPTKYEE 234
Query: 322 SAAM------SQVWHGGKP-------AANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 368
A SQ P + + GGE+ A +RL+ K +++G
Sbjct: 235 IEAALLKPINSQPLVKNPPKCPENTLSVHPFTGGESHAQERLEHLITSGSITGYKSSRNG 294
Query: 369 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG--AGSN 426
+ G +FS K+S +LA+G ++ R + + ++ ++ D E +G G+
Sbjct: 295 ----LMGTDFSTKLSAYLALGSITSRQIHASMSVFENGSTSDDRYKDLEGYGNGENEGTY 350
Query: 427 WLMFELLWRDFFRFITKKY 445
+ FELLWRD+ R T+K+
Sbjct: 351 AVRFELLWRDYMRLCTRKF 369
>gi|146306105|ref|YP_001186570.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
ymp]
gi|145574306|gb|ABP83838.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
ymp]
Length = 477
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 144/334 (43%), Gaps = 49/334 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR+DLR+ DN +L+ A + S + +Y P + + P + F + +++
Sbjct: 4 LMWFRSDLRIDDNTALSQAMSRG-STIALYLVTPGQWQRHDDA-----PCKVDFWLRNLA 57
Query: 187 DLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L + L A L++R + V+ E+ AV+A+ E +E + + A
Sbjct: 58 HLSRALAALNVPLLIRQCEDWNQAPAVIAEVCHQHNVCAVHANEEYGINENLRDRCVAAY 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ + I W S HLD L FK G + T GG+ + + + V AL L
Sbjct: 118 LAQQDIA----WHS---HLDQLLFKPGSILTRSGGYFQVYSQFRKVCYEHLHMALPGLVA 170
Query: 300 LPSRGDVEP---GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P P IP +D S + +W PA GE A QRL++FA E
Sbjct: 171 RPVAQAPTPLASDAIPHAVDGFAMPSEQLRSLW----PA------GEEAARQRLERFADE 220
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K +D ++ G + ++SP+LA G LSPR + AA N G
Sbjct: 221 -QIGYYKDERD--FPALPG---TSQLSPYLAAGVLSPRQ----------CLHAALAANRG 264
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
E S AG + ELLWR+F++ I Y +
Sbjct: 265 EFDSGNAGVVTWVNELLWREFYKHILVGYPRVSR 298
>gi|410615191|ref|ZP_11326217.1| cryptochrome DASH [Glaciecola psychrophila 170]
gi|410165275|dbj|GAC40106.1| cryptochrome DASH [Glaciecola psychrophila 170]
Length = 421
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 148/337 (43%), Gaps = 71/337 (21%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSG---FDKTGPYRASFLIE 183
+ WFR+DLR+ DN + N E V VL C + Y K G T + +F +
Sbjct: 9 LYWFRHDLRLIDNPTFNQLC-EQVDVLI--CVYVQGYTKELQGSFCVGNTSKLKETFEHQ 65
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKA-----IGAD---AVYAHREVSHDEVKS 235
SV L +L+ + L+ + L +L G+D VY
Sbjct: 66 SVLALDADLRHKNQYLLFLDTPSHSALYDLVHKYKVTHFGSDWHPGVY------------ 113
Query: 236 EEKIEAAMKDEGIEVKYF--WGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEA 293
E+K A+ ++ +VK+ G +L+ DLPF+L ++P ++ FR++V+ + I +EA
Sbjct: 114 EQKSLQALHNDCPQVKFISETGYSLFSRTDLPFELEDLPKSFTPFRKQVESLTIDAPVEA 173
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK- 352
L LK LPS + P LL G+ + GGE A +L K
Sbjct: 174 L--LK-LPSAIEPSPEVPQQLLTKGV-------------------VTGGEKAATAQLNKY 211
Query: 353 -FAAEYQAQPPKG-NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
F + Q + N + DS S K+S WLA GCLS R+++ +K+ A
Sbjct: 212 LFGTDLIRQYKQTRNALDDWDS------SSKLSLWLANGCLSVRTVYHTIKQYEVQRGA- 264
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
ND + WL FELLWR++F++ K+ +
Sbjct: 265 ---ND--------STYWLYFELLWREYFQWYLAKHQA 290
>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
Length = 541
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 142/329 (43%), Gaps = 34/329 (10%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANN------ESVSVLPVYCFDPRDYGKSSSGFDKT 173
+A RR + WFR LRVHDN +L+ N E V P++ DP + +
Sbjct: 2 SAKRRTLVHWFRKGLRVHDNPALSQIFNDARASPEKFYVRPIFILDP-----GILDWMQV 56
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G R FL +S+ DL K L+ S L + GKP V EL + + ++ +
Sbjct: 57 GANRWRFLQQSLVDLDKKLKELNSRLYIVRGKPVDVFPELFERWNVQLLTFESDIEPYAL 116
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIE 292
+ + ++ + G++V T+Y+ + + K LG+ P Y F V +++ K +
Sbjct: 117 QRDTTVQKIASEHGVKVDTHCSHTIYNPELVIAKNLGKAPVTYQKFLGIVDKLKLPKVLA 176
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ-VWHGGKPAANSMKGGETEALQRLK 351
+ GLP G D +D + + Q V + N GGETEAL+R++
Sbjct: 177 VPE---GLPD-GIKPIADEFEAVDSCVYDCPTLDQLVKRPQELGVNKFPGGETEALRRME 232
Query: 352 K--FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
+ A K N N S+ + + +SP+L GCLS R + + LK+
Sbjct: 233 ASLIDENWVAAFEKPNTAPN--SLEPS--TTVLSPYLKFGCLSARLLHERLKEILVRKPK 288
Query: 410 ASKWNDGESGSSGAGSNWLMFELLWRDFF 438
SK S G +LLWR+F+
Sbjct: 289 HSK-----PPVSLVG------QLLWREFY 306
>gi|119484468|ref|ZP_01619085.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
gi|119457942|gb|EAW39065.1| deoxyribopyrimidine photolyase [Lyngbya sp. PCC 8106]
Length = 479
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 143/327 (43%), Gaps = 53/327 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ D++ L A +S V+ V+C DP + D P R +++I +
Sbjct: 6 LFWHRRDLRISDHKGLAAAREKSSQVVGVFCLDPNILDQ-----DDVAPARVTYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+K + GS L++ G+P + + +LAKA+ A AVY + +V ++++ A+K+
Sbjct: 61 ELQKQYEKVGSQLLILQGQPSSAIPKLAKALEAKAVYWNLDVEPYAKDRDQQVSEALKEV 120
Query: 247 GIEVKYFWGSTLYHLDDL-------PFKLGEMPTNYGGFREKVKGVEI---RKTIEALDQ 296
I V+ W L+ D++ P+K+ N R+K K + T Q
Sbjct: 121 NIGVETVWDQLLHTPDEIRTKSANEPYKVYTPYWNNWSKRKKQKPIHTFSENPTGLTEKQ 180
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA- 355
LK G + D+P DLG VW ++ GE A RL++F
Sbjct: 181 LKIAKENGII---DLPLAEDLGF--------VWEN----ELILEPGEEAAQNRLEEFCDR 225
Query: 356 ---EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
EY Q DG + ++S L G +S R+++ A ++ A
Sbjct: 226 ALFEYDEQRNFPANDG----------TSQLSAALKFGVISIRTVW------AKTVEAMEN 269
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFR 439
E+ ++ W EL WR+F++
Sbjct: 270 TRSDEARNNIKA--WQQ-ELAWREFYQ 293
>gi|410926431|ref|XP_003976682.1| PREDICTED: cryptochrome-2-like [Takifugu rubripes]
Length = 718
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 135/320 (42%), Gaps = 35/320 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + S+ +Y DP G ++ G + R FL+E++
Sbjct: 5 SVHWFRKGLRLHDNPALQEALNGADSLRCIYILDPWFAGAANVGIN-----RWRFLLEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L+V G+P V L K + + + + I +
Sbjct: 60 EDLDCSLRKLSSRLLVVRGQPTDVFPRLLKDWKVTRLTFEFDPEPYGKERDGAIIKLAQQ 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEALDQLK 298
G+E TLY+LD + P + F+ V +E+ + T + +
Sbjct: 120 FGVETIVRNSHTLYNLDRIIEVNNNSPPLTFKRFQTIVSRLELPRRPLPTVTQHQIHKCG 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
+ + IPSL +LG VW +GGE+EAL+RL K +
Sbjct: 180 AKMADSQEQLYSIPSLEELGFRTEGLPPAVW----------RGGESEALERLHKHLDKKV 229
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ + S+Y + +SP+L GCLS R ++ L++ +
Sbjct: 230 WVANLEHSRVSTCSLYAS--PAGLSPYLRFGCLSCRVLYYNLRELYVKL---------RK 278
Query: 419 GSSGAGSNWLMFELLWRDFF 438
G S S L +LLWR+FF
Sbjct: 279 GCSPPPS--LFGQLLWREFF 296
>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
Length = 558
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 133/327 (40%), Gaps = 44/327 (13%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
R+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL+
Sbjct: 53 RKHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNVGINK-----WRFLL 107
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+ + DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 108 QCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISAL 167
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVE-----IRKTIEALDQ 296
K+ GI V TLY LD++ K G+ P Y F+ V +E + A
Sbjct: 168 CKELGISVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVASMEPPEPPVLTVTSACIG 227
Query: 297 LKGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P + D + +P+L +LG + VW GGE+EAL RL++
Sbjct: 228 SAYTPLKDDHDDHYGVPTLEELGFDTEGLLPPVW----------VGGESEALARLERHLE 277
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAAS 411
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 278 RKAWVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAMPPLS 335
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 336 ----------------LHGQLLWREFF 346
>gi|440895552|gb|ELR47705.1| Cryptochrome-2, partial [Bos grunniens mutus]
Length = 564
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/318 (28%), Positives = 134/318 (42%), Gaps = 47/318 (14%)
Query: 134 LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQ 193
LR+HDN +L A + V VY DP SS G + R FL++S+ DL ++L+
Sbjct: 3 LRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGIN-----RWRFLLQSLEDLDRSLR 57
Query: 194 ARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253
S L V G+P V L + G + + + + I K+ G+EV
Sbjct: 58 KLNSRLFVVRGQPADVFPRLFQEWGVTRLTFEYDSEPFGKERDTAIMKMAKEAGVEVVTE 117
Query: 254 WGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPSRGDV----- 306
TLY LD + G+ P Y F+ + +E+ RK + ++ + R ++
Sbjct: 118 NSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEGCRAEIQESHD 177
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK------FAAEYQAQ 360
E +PSL +LG VW +GGETEAL RL K + A Y+
Sbjct: 178 ETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERKAWVANYER- 226
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
P+ N + S G +SP+L GCLS R + L + K N S
Sbjct: 227 -PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRNSTPPLS 275
Query: 421 SGAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 276 -------LFGQLLWREFF 286
>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
Length = 512
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 142/329 (43%), Gaps = 49/329 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + ++ DP G S+ G +K FL++
Sbjct: 4 KHTVHWFRKGLRIHDNPSLREGLINAKTFRCIFILDPWFAGASNVGINK-----WRFLLQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+SDL +L+ S L V G+P L +L + G + ++ I+
Sbjct: 59 CLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLP-FKLGEMPTNYGGFREKVKGVE-IRKTIEALD-QLKG- 299
+ GI V TLY LD + G+ P Y F++ ++ ++ + + ++D + G
Sbjct: 119 SEMGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQKLLECIDPPERAVPSIDKEFLGN 178
Query: 300 --LPSRGDV-EPGDIPSLLDLGLSQSAAMSQ-VWHGGKPAANSMKGGETEALQRL----- 350
P + D E +P+L +LG + +++ VW GGETEAL RL
Sbjct: 179 AFTPIKYDHDEIFGVPTLEELGFKEINNITRHVW----------VGGETEALIRLQCHLE 228
Query: 351 -KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
K F A + PK S G ++P+L GCLS R F EL + I
Sbjct: 229 RKAFIASFGK--PKMTPQSLVASPTG------LAPYLKFGCLSTRLFFSELNELYKKIRK 280
Query: 410 ASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ + S G +LLWRDFF
Sbjct: 281 S------QPPLSLHG------QLLWRDFF 297
>gi|218709609|ref|YP_002417230.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
gi|218322628|emb|CAV18793.1| deoxyribodipyrimidine photolyase [Vibrio splendidus LGP32]
Length = 470
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 148/331 (44%), Gaps = 43/331 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR--DYGKSSSGFDKTGPYRAS 179
+++ + F +DLR++DN+ L+ A +SV L +P + + G +R +
Sbjct: 1 MKKIGLYLFTSDLRINDNQLLHCAA-QSVDKLIFVIVEPTLVRFSADLAQEQSYGAHRQT 59
Query: 180 FLIESVSDLRKNLQA--RGSDLVVRVG---KPETVLVELAKAIGADAV---YAHREVSHD 231
F+ +S+ +L NL G LVV +P+ L++ I V +A+ +D
Sbjct: 60 FVSQSIDNLELNLNLVRLGQQLVVIHSNHLEPDAAEQTLSQIIATQHVTHFFANAHCGYD 119
Query: 232 EVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR--K 289
E + +++ D + + STL+ ++PF+L ++P+++ FR+ V+ +++ +
Sbjct: 120 ERQLIHSLQSRHPDLITCLPH--HSTLFDSHEMPFELSKVPSSFTKFRKLVEHLDVNGGE 177
Query: 290 TIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQR 349
T+ A P+ IP + + N GGE L
Sbjct: 178 TVIAHLPPPVTPTLTPAHTTAIPIFSSPNVE------------RAVTNDYLGGEDAGLAH 225
Query: 350 LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
L + A A K ++ + G S K SPWLA+GC+SP+++ LK+
Sbjct: 226 LDNYFAHDYALNYKQTRN----AFDGIENSTKFSPWLALGCVSPKTICRHLKQFEI---- 277
Query: 410 ASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
E GS+ + + W+ FELLWR++F +
Sbjct: 278 -------EHGSNDS-TYWIYFELLWREYFYW 300
>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
Length = 533
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 146/338 (43%), Gaps = 42/338 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFRN LR+HDN +L A S +V P+Y DP D K+ + G R F++ES+
Sbjct: 9 TVHWFRNGLRLHDNPALKEAFETSQTVRPLYVLDP-DVLKNGN----IGVVRWRFILESL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DL NL+ S L V G+P V +L K + + + K + ++
Sbjct: 64 ADLDNNLKKLNSRLFVVRGRPSEVFPKLFKEWKISKLTFEVDTTEPARKQDAEVLKIANK 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV--------EIRKTIEALDQ 296
G++++ TLY LD + K G P Y F+ V + I K + A
Sbjct: 124 LGVDIEQRVSHTLYDLDRIVNKNGGTAPLTYKKFQSIVSSLGPPAAPLPAIDKKMVAGCN 183
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA- 355
+ + +P+L ++G +V + GGETEAL+RL+ +
Sbjct: 184 TPTTANHDKIY--GVPTLEEIGQEVPEESREVLY---------PGGETEALERLEVYMKK 232
Query: 356 -EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ + K N N SI + + +SP++ GCLS R + L I A K +
Sbjct: 233 EDWVCKFEKPNTAPN--SIEPS--TTVLSPYMTYGCLSARLFYTRL----AEIYAKKKKH 284
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVV 452
S L +LLWR+FF K + K+V
Sbjct: 285 SQPPVS-------LHGQLLWREFFTTAAYKTPNFNKMV 315
>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|442628599|ref|NP_001260632.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|442628601|ref|NP_001260633.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
gi|440213996|gb|AGB93167.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|440213997|gb|AGB93168.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
Length = 540
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 145/338 (42%), Gaps = 57/338 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 4 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDP-----GILDWMQVGA 58
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 59 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 118
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 119 DAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 178
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ-VWHGGKPAANSMKGGETEALQRLKKF 353
++LK +P+ P D D M Q V + N GGETEAL+R+
Sbjct: 179 EKLKNMPT----PPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRM--- 231
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDEL 400
++ D I+ A F + +SP+L GCLS R +L
Sbjct: 232 ------------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 279
Query: 401 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K+ S + S L+ +L+WR+F+
Sbjct: 280 KEIIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|398889396|ref|ZP_10643239.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM55]
gi|398189518|gb|EJM76792.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM55]
Length = 485
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 140/333 (42%), Gaps = 57/333 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A V VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAATRGPCV-AVYLLSPEQWLEHDD-----APCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L+VR VL++L + DAVY + E E + + +
Sbjct: 57 ELSRELGQLNIPLLVRWAPRWEDAPAVLLDLCRQWQIDAVYLNEEYGIHETRRDAAVART 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ EGI+V + LD L FK G + T G + + + V + +L L
Sbjct: 117 LGAEGIKVHRY-------LDQLLFKPGSVLTRTGTCFQVFSQFRKVCYERLHHSLPGLVR 169
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-- 354
P + ++ +P+ ++ + + + Q+W PA GETEA +RL F
Sbjct: 170 APRKQAPLNIASDAVPTSIEGFATPADNLRQLW----PA------GETEARRRLNSFTDA 219
Query: 355 --AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
YQ + K G + ++S +LA G +SPR + AA
Sbjct: 220 QIDHYQNERDFPAKPG----------TSQLSAYLAAGVISPRQ----------CLHAALN 259
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
N GE S G+ + ELLWR+F++ I Y
Sbjct: 260 NNQGEFESGKTGAVTWINELLWREFYKHILVGY 292
>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 144/338 (42%), Gaps = 57/338 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 27 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDP-----GILDWMQVGA 81
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 82 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 141
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 142 DAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 201
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ-VWHGGKPAANSMKGGETEALQRLKKF 353
++LK +P+ P D D M Q V + N GGETEAL+R+
Sbjct: 202 EKLKNMPT----PPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRM--- 254
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDEL 400
++ D I+ A F + +SP+L GCLS R +L
Sbjct: 255 ------------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 302
Query: 401 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K+ S + S G +L+WR+F+
Sbjct: 303 KEIIKRQPKHS-----QPPVSLIG------QLMWREFY 329
>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 144/338 (42%), Gaps = 57/338 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 27 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDP-----GILDWMQVGA 81
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 82 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 141
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 142 DAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 201
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ-VWHGGKPAANSMKGGETEALQRLKKF 353
++LK +P+ P D D M Q V + N GGETEAL+R+
Sbjct: 202 EKLKNMPT----PPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRM--- 254
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDEL 400
++ D I+ A F + +SP+L GCLS R +L
Sbjct: 255 ------------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 302
Query: 401 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K+ S + S G +L+WR+F+
Sbjct: 303 KEIIKRQPKHS-----QPPVSLIG------QLMWREFY 329
>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
Length = 540
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 145/338 (42%), Gaps = 57/338 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 4 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDP-----GILDWMQVGA 58
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 59 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 118
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 119 DAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 178
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ-VWHGGKPAANSMKGGETEALQRLKKF 353
++LK +P+ P D D M Q V + N GGETEAL+R+
Sbjct: 179 EKLKNMPT----PPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRM--- 231
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDEL 400
++ D I+ A F + +SP+L GCLS R +L
Sbjct: 232 ------------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 279
Query: 401 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K+ S + S L+ +L+WR+F+
Sbjct: 280 KEIIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|390339199|ref|XP_788938.2| PREDICTED: cryptochrome-2-like [Strongylocentrotus purpuratus]
Length = 524
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 142/327 (43%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++I WFR LR+HDN +L TA + P++ DP + +S +K G R FL+E+
Sbjct: 5 STIHWFRKGLRIHDNPALLTAIQGTKVFRPIFILDPH-FIES----EKVGINRWRFLLET 59
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS-HDEVKSEEKIEAAM 243
+ DL + +A G+ L V G P TV E+ K + + + + +E IE A
Sbjct: 60 LQDLDYSFRALGTRLFVVRGNPTTVFPEIFKKWNVTRLTFEVDTEPYARRRDQEVIELAK 119
Query: 244 KDEGIEVKYFWGSTLYHLD-DLPFKLGEMPTNYG---GFREKVKGVEIRKTIEALDQLKG 299
K++ +EV TLY + + + P Y G ++ I + + G
Sbjct: 120 KND-VEVITKVSHTLYDTERTIKANKYKPPMTYQRMVGLLSEIGAPAIPELPPLMANFTG 178
Query: 300 LPS----RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
+ + D E G +PSL DLGL +++ GGETE LQR+ A
Sbjct: 179 VATPVKPDHDNEYG-VPSLEDLGLDLEGLGPRLY----------PGGETEGLQRMDLHLA 227
Query: 356 EYQA----QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ PK + + S + +SP+L GCLSPR + +K+ + +
Sbjct: 228 RKSWVCGFEKPKTSPNSLEPS------TTVLSPYLKWGCLSPRKFYYAIKEVYAQQTNCT 281
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K LM +L+WR+FF
Sbjct: 282 K-----------PPVSLMGQLIWREFF 297
>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
Length = 618
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 137/330 (41%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ W R LR+ DN +L + + VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWVRQGLRLPDNRALREVIQGADTARCVYILDPSFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITAEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 SKCTTPVSDDHDEKCGVPSLEELGFDTGGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>gi|398842541|ref|ZP_10599720.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM102]
gi|398105638|gb|EJL95725.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM102]
Length = 482
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 148/333 (44%), Gaps = 57/333 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A SV VY P+ + K F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAAARGPSV-AVYLLSPQQWLAHDDASCKV-----DFWLRNLI 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+LR+ L A L++R + VL+EL + + DAV+A+ E E + + + A
Sbjct: 57 ELRQALGALNIPLLIRKASLWEEAPKVLLELCQQLKIDAVHANEEYGIHETRRDAAVAQA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K +GI+ + LD L FK G + T G + + + + V + +L +L
Sbjct: 117 LKAQGIDFYRY-------LDQLLFKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPRLVT 169
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P+ + + PS ++ + S ++ +W PA GE+EA +RL+ F
Sbjct: 170 APAIQAPLGIASDEPPSRVEGFDTPSDSLRALW----PA------GESEARRRLETFTDT 219
Query: 357 ----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
Y ++ K G + ++S +L G +SPR + AA +
Sbjct: 220 QIDYYHSERDFPAKPG----------TSQLSAYLTAGVISPRQ----------CLHAALQ 259
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
N GE S G+ + ELLWR+F++ I Y
Sbjct: 260 SNQGEFESGKVGAVTWINELLWREFYKHILVGY 292
>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 144/338 (42%), Gaps = 57/338 (16%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 27 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDP-----GILDWMQVGA 81
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 82 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 141
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 142 DAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 201
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ-VWHGGKPAANSMKGGETEALQRLKKF 353
++LK +P+ P D D M Q V + N GGETEAL+R+
Sbjct: 202 EKLKNMPT----PPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRM--- 254
Query: 354 AAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDEL 400
++ D I+ A F + +SP+L GCLS R +L
Sbjct: 255 ------------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKL 302
Query: 401 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K+ S + S G +L+WR+F+
Sbjct: 303 KEIIKRQPKHS-----QPPVSLIG------QLMWREFY 329
>gi|220905687|ref|YP_002480998.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
gi|219862298|gb|ACL42637.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7425]
Length = 475
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 138/320 (43%), Gaps = 41/320 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP + D P R +++I S+
Sbjct: 6 LFWHRRDLRIADNVGLAAARQRTAKVVGVFCLDPNLLER-----DDVAPARVAYMIGSLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ GS L++ +P + +LA A+ A AV+ + +V + + ++ A++
Sbjct: 61 HLQQQYVQSGSQLLILHQQPTIAIPQLATALQAKAVFWNWDVEPYSQERDRTVQTALETV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP----- 301
GIEV+ FW L+ + GE T + F + +L GL
Sbjct: 121 GIEVQNFWDQLLHPPAAIKTGSGEAYTVFSPFWRNWSRQPKEPPVPSLATATGLTPTEQQ 180
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA--AEYQA 359
+ V +P+ DLG +W P ++ GET A +RL++F A Y
Sbjct: 181 AADQVGAIALPTAKDLGF--------IWDTPLP----LEPGETAAQERLEQFCQRAIYAY 228
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
Q ++ N + G + ++S L G L R+++ AT+ SA E+
Sbjct: 229 Q-----QERNFPATTG---TSQLSAALKFGVLGIRTVW------ATTQSALESSRSQEAE 274
Query: 420 SSGAGSNWLMFELLWRDFFR 439
S W EL WR+F++
Sbjct: 275 DS--IQTWQQ-ELAWREFYQ 291
>gi|420691989|ref|ZP_15175191.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
gi|391568598|gb|EIS16299.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
Length = 467
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ P + S L Q + SQ+ GE ALQRL++F E Q Q
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQL----------FPAGEDAALQRLRRFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ +D ++ G SC +SP+L +G LSPR F+ L + + E+ S
Sbjct: 224 YRQYRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADS 270
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GA + WL EL+WR+F+R + Y
Sbjct: 271 GAFT-WLN-ELIWREFYRHLLVAY 292
>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
Length = 540
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 148/339 (43%), Gaps = 59/339 (17%)
Query: 123 RRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTGP 175
+R+++V WFR LR+HDN +L+ TA N + V P++ DP + + G
Sbjct: 4 QRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGKYFVRPIFILDP-----GILDWMQVGA 58
Query: 176 YRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
R FL +++ DL L+ S L V GKP V + K+ + + ++ V
Sbjct: 59 NRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTR 118
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEAL 294
+ ++ K EG+ V+ T+Y+ + + K LG+ P Y F V+ +++ K +
Sbjct: 119 DAAVQKLAKAEGVRVETHCSHTIYNPELVKAKNLGKAPITYQKFLGIVEQLKVPKVLGVP 178
Query: 295 DQLKGLPS--RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
++LK +P+ + +VE D + + Q + + N GGETEAL+R+
Sbjct: 179 EKLKKMPTPPKDEVEQKDSAAYDCPTIKQLVKRPE-----ELGPNKFPGGETEALRRM-- 231
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDE 399
++ D I+ A F + +SP+L GCLS R +
Sbjct: 232 -------------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQK 278
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
LK+ S + S L+ +L+WR+F+
Sbjct: 279 LKEIIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|398969087|ref|ZP_10682700.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM30]
gi|398142781|gb|EJM31672.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM30]
Length = 481
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 149/334 (44%), Gaps = 59/334 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR HDN +L A +V VY P+ + + K F + ++
Sbjct: 3 LIWLRSDLRQHDNTALAAAAARGPTV-AVYLSSPQQWLEHDDAACKV-----DFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L +L A L++R + VL+EL + + +AV+ + E DE + + + A
Sbjct: 57 ELSASLGALNIPLLLRTADHWDQAPAVLLELCRQLNIEAVHVNEEYGVDESRRDAAVAVA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN-------YGGFREKVKGVEIRKTIEALD 295
+K +GI + LD L FK G + T + FR KV + +++ AL
Sbjct: 117 LKSKGIAFHSY-------LDQLLFKPGTVLTKTETYFQVFSQFR-KVCYERLHRSMPALV 168
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
+ G ++ +++ +P+ + + S ++ +W PA GE EA +RL FA
Sbjct: 169 KAPGKQAKLNIDSDPVPASVPGFATPSESLRALW----PA------GEQEAQRRLDTFAD 218
Query: 356 E----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
YQ++ K G + ++S +LA G +SPR + AA
Sbjct: 219 AQIDYYQSERDFPAKPG----------TSQLSAYLAAGVISPRQ----------CLQAAL 258
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ N GE S G+ + ELLWR+F++ I Y
Sbjct: 259 QSNQGEFDSGKVGAVTWINELLWREFYKHILVGY 292
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 145/317 (45%), Gaps = 48/317 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESV-SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
I WFR DLR+ DN +L A + S +V+PV+ FD + G P R FL++S+
Sbjct: 3 IHWFRRDLRLRDNTALLAAADASGGAVIPVFIFD-----DAILGGRFASPARTQFLLDSL 57
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L L++ G LV+R G+P T L+ L + GA V +R+ + V+ + I+ ++
Sbjct: 58 TALDGELRSLGLHLVLRRGEPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELRA 117
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF----REKVKGVEIRKTIEALDQLKGLP 301
G + + + ++ ++++ G+ T Y + R +++ +R ++ + +L +P
Sbjct: 118 AGYRAESYKDAVIFEMNEVVTAAGQPYTVYTPYAKRWRARLESEPVR--VQGVPELTAIP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+P +P+L DL + ++ + GET A L+ F A
Sbjct: 176 LPAS-DP--LPALNDLLPTAPTSVPR-----------FATGETAARAALEHFIHNAIA-- 219
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
N D + A + ++SP+L G LSPR + AA + S
Sbjct: 220 ---NYATARDLVAIAG-TSRLSPYLRFGVLSPRQ----------CVVAA------RAAPS 259
Query: 422 GAGSNWLMFELLWRDFF 438
G G + EL+WR+F+
Sbjct: 260 GPGPESWIGELIWREFY 276
>gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM10+]
gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus
str. 91001]
gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516]
gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1]
gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|384122926|ref|YP_005505546.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|384126809|ref|YP_005509423.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|384139466|ref|YP_005522168.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|384415591|ref|YP_005624953.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420553020|ref|ZP_15050328.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|420558580|ref|ZP_15055192.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|420564034|ref|ZP_15060048.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|420569077|ref|ZP_15064628.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|420574726|ref|ZP_15069742.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|420580056|ref|ZP_15074582.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|420585384|ref|ZP_15079413.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|420590518|ref|ZP_15084031.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|420595913|ref|ZP_15088884.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|420601535|ref|ZP_15093889.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|420606977|ref|ZP_15098798.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|420612394|ref|ZP_15103667.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|420617756|ref|ZP_15108361.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|420623037|ref|ZP_15113090.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|420628142|ref|ZP_15117725.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|420633265|ref|ZP_15122327.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|420638464|ref|ZP_15126998.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|420643927|ref|ZP_15131964.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|420649220|ref|ZP_15136767.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|420654878|ref|ZP_15141852.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|420660347|ref|ZP_15146762.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|420665638|ref|ZP_15151502.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|420670533|ref|ZP_15155959.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|420675883|ref|ZP_15160827.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|420681492|ref|ZP_15165902.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|420686803|ref|ZP_15170634.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|420697804|ref|ZP_15180306.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|420703521|ref|ZP_15184921.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|420708992|ref|ZP_15189669.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|420714448|ref|ZP_15194540.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|420719947|ref|ZP_15199279.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|420725437|ref|ZP_15204083.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|420731042|ref|ZP_15209109.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|420736060|ref|ZP_15213644.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|420741538|ref|ZP_15218567.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|420747183|ref|ZP_15223377.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|420752691|ref|ZP_15228251.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|420758346|ref|ZP_15232871.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|420763706|ref|ZP_15237496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|420768947|ref|ZP_15242208.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|420773944|ref|ZP_15246722.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|420779527|ref|ZP_15251652.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|420785120|ref|ZP_15256548.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|420790313|ref|ZP_15261192.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|420795823|ref|ZP_15266149.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|420800878|ref|ZP_15270687.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|420806252|ref|ZP_15275550.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|420811580|ref|ZP_15280347.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|420817125|ref|ZP_15285344.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|420827514|ref|ZP_15294673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|420833231|ref|ZP_15299841.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|420838075|ref|ZP_15304220.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|420843257|ref|ZP_15308919.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|420848911|ref|ZP_15314004.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|420854494|ref|ZP_15318773.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|420859777|ref|ZP_15323386.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|421764191|ref|ZP_16200983.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia
pestis KIM10+]
gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Microtus str. 91001]
gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516]
gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342854595|gb|AEL73148.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|391425862|gb|EIQ88096.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|391426528|gb|EIQ88704.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|391439765|gb|EIR00390.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|391441270|gb|EIR01775.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|391444732|gb|EIR04924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|391456609|gb|EIR15620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|391457600|gb|EIR16526.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|391459970|gb|EIR18708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|391472759|gb|EIR30190.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|391474551|gb|EIR31831.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|391475170|gb|EIR32394.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|391488956|gb|EIR44747.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|391490139|gb|EIR45813.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|391491571|gb|EIR47119.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|391504403|gb|EIR58496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|391505077|gb|EIR59114.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|391509951|gb|EIR63528.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|391520393|gb|EIR72946.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|391522601|gb|EIR74982.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|391523660|gb|EIR75952.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|391535615|gb|EIR86673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|391538245|gb|EIR89065.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|391540465|gb|EIR91089.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|391553518|gb|EIS02837.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|391553991|gb|EIS03271.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|391554886|gb|EIS04092.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|391569662|gb|EIS17221.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|391575381|gb|EIS22105.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|391582438|gb|EIS28195.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|391585186|gb|EIS30620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|391595896|gb|EIS39892.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|391598485|gb|EIS42198.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|391599985|gb|EIS43553.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|391612885|gb|EIS54907.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|391613474|gb|EIS55439.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|391617393|gb|EIS58941.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|391625715|gb|EIS66174.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|391632048|gb|EIS71614.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|391636532|gb|EIS75549.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|391638938|gb|EIS77685.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|391648656|gb|EIS86143.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|391652615|gb|EIS89658.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|391657171|gb|EIS93708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|391661578|gb|EIS97608.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|391669556|gb|EIT04679.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|391678828|gb|EIT13013.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|391679816|gb|EIT13915.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|391680593|gb|EIT14621.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|391692750|gb|EIT25559.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|391697437|gb|EIT29832.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|391708633|gb|EIT39878.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|391713085|gb|EIT43895.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|391713730|gb|EIT44474.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|391725197|gb|EIT54686.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|391726962|gb|EIT56244.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|391729089|gb|EIT58115.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|411175505|gb|EKS45531.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
Length = 487
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ P + S L Q + SQ+ GE ALQRL++F E Q Q
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQL----------FPAGEDAALQRLRRFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ +D ++ G SC +SP+L +G LSPR F+ L + + E+ S
Sbjct: 224 YRQYRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADS 270
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GA + WL EL+WR+F+R + Y
Sbjct: 271 GAFT-WLN-ELIWREFYRHLLVAY 292
>gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
Length = 487
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHV-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ P + S L Q + SQ+ GE ALQRL++F E Q Q
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQL----------FPAGEDAALQRLRRFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ +D ++ G SC +SP+L +G LSPR F+ L + + E+ S
Sbjct: 224 YRQYRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADS 270
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GA + WL EL+WR+F+R + Y
Sbjct: 271 GAFT-WLN-ELIWREFYRHLLVAY 292
>gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F]
gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides
F]
Length = 487
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ P + S L Q + SQ+ GE ALQRL++F E Q Q
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQL----------FPAGEDAALQRLRRFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ +D ++ G SC +SP+L +G LSPR F+ L + + E+ S
Sbjct: 224 YRQYRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADS 270
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GA + WL EL+WR+F+R + Y
Sbjct: 271 GAFT-WLN-ELIWREFYRHLLVAY 292
>gi|420822431|ref|ZP_15290112.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
gi|391695682|gb|EIT28232.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
Length = 480
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ P + S L Q + SQ+ GE ALQRL++F E Q Q
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQL----------FPAGEDAALQRLRRFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ +D ++ G SC +SP+L +G LSPR F+ L + + E+ S
Sbjct: 224 YRQYRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADS 270
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GA + WL EL+WR+F+R + Y
Sbjct: 271 GAFT-WLN-ELIWREFYRHLLVAY 292
>gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
PB1/+]
gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+]
Length = 487
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 140/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
P + S L Q + SQ+ GE ALQRL++F E Q Q
Sbjct: 176 KTRHAPPV-LLSPLPFDYPQQSVDSQL----------FPAGEDAALQRLRRFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ +D ++ G SC +SP+L +G LSPR F+ L + + ES S
Sbjct: 224 YRQYRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ESADS 270
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GA + WL EL+WR+F+R + Y
Sbjct: 271 GAFT-WLN-ELIWREFYRHLLVAY 292
>gi|427420013|ref|ZP_18910196.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
gi|425762726|gb|EKV03579.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
Length = 482
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 141/318 (44%), Gaps = 35/318 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A S V+ +C DP G + D P R ++++ V+
Sbjct: 6 LFWHRRDLRISDNLGLAAARERSPKVVGFFCLDP---GILEA--DDVAPARVAYMLGCVA 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ QA GS+L++ G P + + A +GA AVY +R+V + + + AA+ ++
Sbjct: 61 QLQERYQAVGSELLILKGNPVEQIPQTASTLGAMAVYWNRDVEPYSRQRDNAVAAALTEK 120
Query: 247 GIEVKY-FWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL--PSR 303
GIE++ W L+ D+ G+ T YG F + + L GL R
Sbjct: 121 GIEMRTKTWDQLLHAPGDVLTGAGKPYTVYGPFWRNWQNLVKLPPAATLQGAVGLSDAER 180
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
G V+ +PS LG + +A + ++ GE A +L+ F
Sbjct: 181 GLVDEIALPSAKALGFTWAAPL------------PLEPGERAARAQLEFFG---HKAIEA 225
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
++ N ++ G + +S L G + R E+ +TA + A ++G +
Sbjct: 226 YDEQRNFPAVTGTSL---LSAALKFGAVGMR----EVWQTAMTAYDACNSDEGRTNV--- 275
Query: 424 GSNWLMFELLWRDFFRFI 441
W M EL WR+F++ +
Sbjct: 276 -QTW-MKELAWREFYQHV 291
>gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua]
gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua]
gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. UG05-0454]
Length = 485
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ P + S L Q + SQ+ GE ALQRL++F E Q Q
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQL----------FPAGEDAALQRLRRFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ +D ++ G SC +SP+L +G LSPR F+ L + + E+ S
Sbjct: 224 YRQYRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADS 270
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GA + WL EL+WR+F+R + Y
Sbjct: 271 GAFT-WLN-ELIWREFYRHLLVAY 292
>gi|398992808|ref|ZP_10695769.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM21]
gi|398136264|gb|EJM25356.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM21]
Length = 487
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 146/329 (44%), Gaps = 49/329 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR++DN +L+ +V VY P + + P + F + ++S
Sbjct: 10 LIWLRSDLRLNDNTALSAGAARGQAV-AVYLLSPEQWLEHDDA-----PCKVDFWLRNLS 63
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R + TVL++L + + DAV+ + E E + + + A
Sbjct: 64 ELSRALGELNIPLLIRKASRWDEAPTVLLDLCQQLKIDAVHVNEEYGIHESRRDAAVAQA 123
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALDQ 296
+K GI+ +LD L FK G + T G + + KV + ++
Sbjct: 124 LKANGIDF-------CSYLDQLLFKPGTVLTRTGTYFQVFSQFRKVCYERLHRSTPERVC 176
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
G+ + + +PS ++ + S ++ ++W PA GETEA +RL FA +
Sbjct: 177 APGVQAPLAISSDTLPSSVEGFATPSDSLRKLW----PA------GETEARRRLDTFA-D 225
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K +D + ++S +LA G +SPR + AA + N G
Sbjct: 226 AQIDYYKDERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQSNQG 270
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E S G+ + ELLWR+F++ I Y
Sbjct: 271 EFESGNVGAVTWINELLWREFYKHILVGY 299
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 146/323 (45%), Gaps = 47/323 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S ++ ++C DP ++ P R ++++ +
Sbjct: 6 LFWHRRDLRISDNMGLAAARKQSSKIVGLFCLDPNILNS-----NEVAPARVTYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+++ GS L++ G+P + +LA A+ V+ H++ + + K+E + +
Sbjct: 61 ELKESYSKIGSQLLIVRGEPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS---R 303
GI V +W L+ +D+ + G+ T Y F + + E LD+++GL + +
Sbjct: 121 GIAVTNYWDQLLHPPEDILTQSGKPYTVYTPFWKNWSQKPKLEVAEKLDRIQGLTAEEIK 180
Query: 304 GDVEPG--DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA----AEY 357
E G +P+ DLG W G + GET A ++L++F+ A+Y
Sbjct: 181 IAQETGVVSLPTGKDLGY--------YWDG----ELILTPGETAAREQLEEFSERAIAQY 228
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD-ELKKTATSISAASKWNDG 416
Q Q N ++ G + +SP L G + R+++ L+ T S S + N
Sbjct: 229 QEQ-------RNFPAVEGTSL---LSPALRFGVIGIRTVWQATLEATKNSYSEEVRANI- 277
Query: 417 ESGSSGAGSNWLMFELLWRDFFR 439
W EL WR+F++
Sbjct: 278 --------ETWQK-ELAWREFYQ 291
>gi|398952323|ref|ZP_10674712.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM33]
gi|398155251|gb|EJM43701.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM33]
Length = 480
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 146/340 (42%), Gaps = 45/340 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A V VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAAARGPCV-AVYLLSPEQWLEHDD-----APCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R +VL+ L + DA++ + E E + + + A
Sbjct: 57 ELSRELGHLNIPLLIRQAPRWDDAPSVLLNLCRQWQVDALHLNDEYGIHESRRDAAVARA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ EGIEV + LD L FK G + T G + + + + V + +L L
Sbjct: 117 LQAEGIEVHRY-------LDQLLFKPGSVLTRTGTYFQVFSQFRKVCYERLHHSLPGLVR 169
Query: 300 LPSRGDVEPGDIPS-LLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
P + P +I S + L + A G P ++ GETEA +RL F+ +
Sbjct: 170 APHKQ--APLNIASDAVPLSVEGFAT------PGDPLSSLWPAGETEARRRLDSFS---E 218
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
AQ + + + G + ++S +LA G +SPR + AA N GE
Sbjct: 219 AQIDHYQNERDFPAKPG---TSQLSAYLAAGVISPRQ----------CLHAALNSNQGEF 265
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPAT 458
S G+ + ELLWR+F++ I Y + P T
Sbjct: 266 ESGNTGAVTWINELLWREFYKHILVGYPRVSRHRAFRPET 305
>gi|420547711|ref|ZP_15045581.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
gi|391424563|gb|EIQ86924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
Length = 487
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 142/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSERAIPCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ P + S L Q + SQ+ GE ALQRL++F E Q Q
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQL----------FPAGEDAALQRLRRFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ +D ++ G SC +SP+L +G LSPR F+ L + + E+ S
Sbjct: 224 YRQYRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADS 270
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GA + WL EL+WR+F+R + Y
Sbjct: 271 GAFT-WLN-ELIWREFYRHLLVAY 292
>gi|398904477|ref|ZP_10652320.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM50]
gi|398175856|gb|EJM63596.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM50]
Length = 482
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 148/329 (44%), Gaps = 49/329 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A SV VY P+ + K F + ++S
Sbjct: 3 LIWLRSDLRLHDNTALSAAAARGPSV-AVYLLSPQQWLAHDDASCKV-----DFWLRNLS 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+LR L A L++R + VL+EL + + DAV+ + E E + + + A
Sbjct: 57 ELRHALGALNIPLLIRKASRWDEAPKVLLELCQQLKIDAVHVNEEYGIHETRRDAAVAQA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K +GI+ + LD L FK G + T G + + + + V + +L +L
Sbjct: 117 LKAQGIDFYRY-------LDQLLFKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPRLVT 169
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P+ + + PS ++ + S ++ +W PA GE EA +RL+ F
Sbjct: 170 APAIQAPLGIASDEPPSRVEGFDTPSDSLRALW----PA------GEAEARRRLETFT-- 217
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
AQ + + + + G + ++S ++ G +SPR + AA + N G
Sbjct: 218 -DAQIDYYHSERDFPAKPG---TSQLSAYITAGVISPRQ----------CLHAALQSNQG 263
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E S G+ + ELLWR+F++ I Y
Sbjct: 264 EFESGKVGAVTWINELLWREFYKHILVGY 292
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 126/281 (44%), Gaps = 40/281 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS---FLIE 183
++WFR DLR+ DN +L +A S ++PVY +P G + GP + +L
Sbjct: 12 LLWFRKDLRLDDNHALQSAATSSRPLIPVYIREP--------GVTERGPLGGAQEWWLHY 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L+ L A GS L++R G+ TVL +L K GA+AV +R V+ + +I+ A+
Sbjct: 64 SLAALQIALDAVGSKLILRHGEALTVLEKLVKETGAEAVVWNRRYDPAGVEVDTQIKKAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPS 302
+ +GIE F G L+ L G Y F R + E IEA +L
Sbjct: 124 RSKGIEANSFAGQLLHEPTRLRTGTGNHYKTYTPFWRAFEQSGEPPFPIEAPRRLLAPGR 183
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ D SLL + ++ + +W GE AL +LK F
Sbjct: 184 WPQSDSLDAWSLLPAKPNWASEFADIW----------TPGEAAALDKLKDFV-------- 225
Query: 363 KGNKDGN-HDSIYGANFSCK-----ISPWLAMGCLSPRSMF 397
DG +D G +F K +SP LA+G +SP M+
Sbjct: 226 ----DGALNDYAIGRDFPDKPATSLLSPHLALGEISPARMW 262
>gi|254431842|ref|ZP_05045545.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
gi|197626295|gb|EDY38854.1| deoxyribodipyrimidine photolyase [Cyanobium sp. PCC 7001]
Length = 554
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 127/278 (45%), Gaps = 39/278 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +VWFR DLR+ D+ +L+ A +E +VLP++ DP + +TG R L++
Sbjct: 2 RLQVVWFRRDLRLGDHPALHQAASEG-AVLPLFILDP-----ALLQHPETGVARVGVLLD 55
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS---EEKIE 240
+++ L L+ S L+VR G+P L+ + KA ADAV AH V + + + +++
Sbjct: 56 NLAALDHELKQLASRLLVRWGEPAACLLSVVKAYRADAVLAH--VDSERIVGRVRDARVQ 113
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQ-LKG 299
++ G+ +++ + P L E+ Y +R GV + + A + L
Sbjct: 114 GQLQQAGVPLRWI---------EPPGGLEEL-VPYPAYRRFWHGVMAAEPLPAPGRLLTP 163
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
P+ G+ +PSL LG+ GKP GG ALQRL+ F + +
Sbjct: 164 PPAAGESTAAAVPSLEALGMVDD---------GKPRP---PGGSAAALQRLQAFCRQEVS 211
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
++ S A S ISP+L G LS R
Sbjct: 212 -----SRYYWQLSYPAARASSGISPYLKFGVLSHRQCL 244
>gi|440731048|ref|ZP_20911095.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
gi|440375449|gb|ELQ12158.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
Length = 473
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR DLR+HD+ +L+ A + +PVY P D G S+G S+L ++
Sbjct: 4 AIVWFRRDLRLHDHPALHAALAAGHTPVPVYVHSPGDEGAWSAGAASL-----SWLQRAL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L LQARGS L++R G ETVL EL +A GA AVY +R + K++ +++
Sbjct: 59 AALDAQLQARGSRLILRQGPAETVLRELIQACGAVAVYWNRRYEPATQPRDAKLKRELRE 118
Query: 246 EGIEVKYF 253
+G++V +
Sbjct: 119 QGLDVHSY 126
>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
Length = 532
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 146/332 (43%), Gaps = 40/332 (12%)
Query: 120 AAIRRASIVWFRNDLRVHDNESLNTANNES------VSVLPVYCFDPRDYGKSSSGFDKT 173
A RR I WFR LRVHDN +L N++ SV P++ DP + K
Sbjct: 2 AVERRTLIHWFRKGLRVHDNPALIQIFNKAGASPDKFSVRPIFVLDP-----GILDWMKV 56
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G R FL +S+ DL KNL+ S L + GKP + L + + ++ V
Sbjct: 57 GANRWRFLQQSLLDLDKNLKELNSRLYIVRGKPVDIFPNLFDRWNVELLTFETDIEPYAV 116
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIE 292
K ++ ++ G++V T+Y+ + + K G P Y F V+ +++ K
Sbjct: 117 KRDKAVQDIAAAHGVKVDTHCSHTIYNPEIVIAKNFGRAPITYQKFLSVVEKLKLPKV-- 174
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLS---QSAAMSQ-VWHGGKPAANSMKGGETEALQ 348
LD+ + LP+ V+P I L++G S + + Q V + N GGE EAL+
Sbjct: 175 -LDKPQRLPN--GVQP--IADELEMGQSDVYECPTLDQLVKRPQELGINKFPGGEREALR 229
Query: 349 RLKKFAAE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
RL ++ + A K N N S+ + + +SP+L GCLS R + L +
Sbjct: 230 RLDTSLSDEHWVASFEKPNTAPN--SLEPS--TTVLSPYLKFGCLSARLVHQRLHEILKR 285
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
SK S G +LLWR+F+
Sbjct: 286 HPKHSK-----PPVSLVG------QLLWREFY 306
>gi|405975335|gb|EKC39908.1| Cryptochrome-1 [Crassostrea gigas]
Length = 510
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 141/326 (43%), Gaps = 39/326 (11%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
++ +I WFR LR+HDN +L A + V PV+ DP ++ G + R FL
Sbjct: 1 MKTCAIHWFRKGLRLHDNPALQAACKVADDVKPVFILDPWFANNANVGVN-----RWRFL 55
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++ +L +NL+ S L + GKP V +L K G + ++ + + +I+
Sbjct: 56 LQTLQNLDENLKKINSRLYIIKGKPADVFPKLFKNWGVSHLTFEEDIEPYALTRDSEIKK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ ++V TL+ + K G+ P Y + + + K +++ + K
Sbjct: 116 LADEHNVKVTSCVSHTLFDPQRIISKNGGKAPLTYQRLQTVLSSLGSPPKPVDSPSECKT 175
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
+ +PSL DLG S+ + GGETEAL+RL+ +
Sbjct: 176 KTESDHDKKYGVPSLEDLGKSEKECGPLL----------FPGGETEALRRLESMMGKKNW 225
Query: 360 ----QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ PK + S + +SP+L GCLSPR + +L++ +N
Sbjct: 226 VCTFEKPKTAPNSLEPS------TTVLSPYLKFGCLSPRMFYYKLQEV---------YNK 270
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFI 441
+ S L+ +LLWR+F+ +
Sbjct: 271 AKHTSPPVS---LLGQLLWREFYYCV 293
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
N +++ + I W R DLRV DN L+ A S ++ ++C D + D P R
Sbjct: 39 NLSSMTNSVIFWHRRDLRVSDNIGLSKAYQHSSKLVGLFCLDTDILNQ-----DNVAPAR 93
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
++++ + DLR++ Q G L++ G P ++ ++A A+ D V+ + +V K +
Sbjct: 94 ITYMLGCLQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDN 153
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN-YGGFREKVKGVEIRKTIEALDQ 296
++ A+++ GI + +W L+ D+ K P Y F E +AL +
Sbjct: 154 QVIEALQERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGK 213
Query: 297 LKGLPSR-----GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
L+ L ++ D+P+ DLG S A + ++ GET A ++L
Sbjct: 214 LESLSEEEINTVKNLGIIDLPTAKDLGYSWDAPL------------ILEPGETAAKEQLN 261
Query: 352 KFAAE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
F Y Q + G N + +SP G + R ++ +
Sbjct: 262 YFCDSLIYNYQEQRNYP--------GINGTSTLSPAFKFGVIGIREVWQ---------AT 304
Query: 410 ASKWNDGESGSSGAGSNWLMFELLWRDFFR 439
S + + S + E+ WR+F++
Sbjct: 305 LSAYENTYSDEARENIQTWQQEIAWREFYQ 334
>gi|290997872|ref|XP_002681505.1| predicted protein [Naegleria gruberi]
gi|284095129|gb|EFC48761.1| predicted protein [Naegleria gruberi]
Length = 528
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 144/349 (41%), Gaps = 102/349 (29%)
Query: 128 VWFRNDLRVHDNESLNTA----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+WFRNDLR+HDNE+L A E+ +LP+Y FD KS S P+ S +
Sbjct: 34 IWFRNDLRIHDNEALYYAIKKAKKENKKLLPIYIFD-----KSQSQL--PSPFSISKIPN 86
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S + +N E++IE
Sbjct: 87 SFTLFEQNF-------------------------------------------EKEIENIC 103
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL--GEMPTNYGGFREKV------KGVEIR-KTIEAL 294
I W STL H +DLP+ ++P + FR+K+ K +EI IE
Sbjct: 104 NRNNINFIKKWSSTLIHKNDLPYTDLPNQIPKVFSAFRKKIEKAIDEKDIEIECYEIEKE 163
Query: 295 D---------QLKGLPSRGDVEPGDIPSLLDLG----------LSQSAAMSQVWHGGKPA 335
D ++ + S+ I L ++ + ++ +++ + +
Sbjct: 164 DYEELLLSEEEINKIHSQFSKNSNLITKLENVNEFMKEYLYPDMEKTQFDNEIKYDQRSV 223
Query: 336 ANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRS 395
+ GGE +AL+R K F E + + ++GN ++S K+SPWLA GC+S R
Sbjct: 224 VKFI-GGEDKALKRCK-FYIENKLKNYSTTRNGN-----IGDYSTKLSPWLANGCISSRY 276
Query: 396 MFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKK 444
++ E++K + S +S +N L+ ELLWRDF++++ K
Sbjct: 277 IYTEIQKNSNEKSKSS-------------ANILVSELLWRDFYKYLAWK 312
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 137/330 (41%), Gaps = 42/330 (12%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
N +++ + I W R DLRV DN L+ A S ++ ++C D + D P R
Sbjct: 39 NLSSMTNSVIFWHRRDLRVSDNIGLSKAYQHSSKLVGLFCLDTDILNQ-----DNVAPAR 93
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
++++ + DLR++ Q G L++ G P ++ ++A A+ D V+ + +V K +
Sbjct: 94 ITYMLGCLQDLRESYQQLGGQLLIFQGNPTQIIPQVADALKVDCVFWNNDVEPYSKKRDN 153
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN-YGGFREKVKGVEIRKTIEALDQ 296
++ A+++ GI + +W L+ D+ K P Y F E +AL +
Sbjct: 154 QVIEALQERGIHSQTYWDQLLHAPGDILTKSNNAPYKVYTPFWRSWLKEEKANIAQALGK 213
Query: 297 LKGLPSR-----GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
L+ L ++ D+P+ DLG S A + ++ GET A ++L
Sbjct: 214 LESLSEEEINTVKNLGIIDLPTAKDLGYSWDAPL------------ILEPGETAAKEQLN 261
Query: 352 KFAAE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
F Y Q + G N + +SP G + R ++ +
Sbjct: 262 YFCDSLIYNYQEQRNYP--------GINGTSTLSPAFKFGVIGIREVWQ---------AT 304
Query: 410 ASKWNDGESGSSGAGSNWLMFELLWRDFFR 439
S + + S + E+ WR+F++
Sbjct: 305 LSAYENTYSDEARENIQTWQQEIAWREFYQ 334
>gi|408380523|ref|ZP_11178107.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
gi|407745736|gb|EKF57268.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
Length = 492
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 137/316 (43%), Gaps = 43/316 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPY---RASFLIE 183
I+WFR DLR+ D+ +L TA +E ++P+Y +P G TGP +A +L
Sbjct: 20 ILWFRKDLRISDHAALATAVDEGFRIVPLYIREPEHAG--------TGPLGAAQAWWLHH 71
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ L +L A G+ LV+R G + L +L GA AV+ +R + ++ ++A +
Sbjct: 72 SLEALSASLDALGASLVLRSGAADAALSDLITETGASAVFWNRRYDPSGISVDKALKAKL 131
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+GIEV+ F G L+ L G Y F + + G + E + K LP+
Sbjct: 132 IADGIEVRTFAGQILHEPTKLKTGAGGHFRVYTPFWKALDGSG--EPPEPIPAPKALPA- 188
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
P P L W G + + GE A +RL A++ A K
Sbjct: 189 ----PEHWPKSEKLSDWDLLPTKPNWAKG--FESEWQPGEDGARKRL----ADFIASGLK 238
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
G + G +SP LA+G +SP S++ + + S S+
Sbjct: 239 GYR--TRRDFPGEAHVSMLSPHLALGEISPASVWHATRGLSDSYSS-------------- 282
Query: 424 GSNWLMF--ELLWRDF 437
+++ F EL+WRDF
Sbjct: 283 -EDYIHFRKELVWRDF 297
>gi|399220401|gb|AFP33464.1| cryptochrome 1 [Dicentrarchus labrax]
Length = 567
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 142/347 (40%), Gaps = 48/347 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN SL + + S+ VY DP G S+ G + R FL+ +
Sbjct: 5 TIHWFRKGLRLHDNPSLRDSIRGADSLRCVYILDPWFAGSSNVGIN-----RWRFLLHCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + I+ +
Sbjct: 60 EDLDNSLRKLNSRLYVIRGQPTDVFPRLFKEWQINRLSYEYDSEPFGKERDAAIQKLACE 119
Query: 246 EGIEVKYFWGSTLYHL-DDLPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQLK 298
+EV TLY+L + G P Y F+ ++ VE+ T+E +
Sbjct: 120 AEVEVMVQVSHTLYNLVKIIELNDGHPPLTYKRFQALINRMDAVELPAETITLEVIRNCA 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S + +PSL +LG + +W GGETEAL RL K
Sbjct: 180 TPISEDHDDKFGVPSLEELGFETEGLTTAIW----------PGGETEALMRLERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ N + S G +SP+L GCLS R + L T + K
Sbjct: 230 WVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFRL----TDLYRKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATA 459
N+ S L +LLWR+FF + T +S +E P
Sbjct: 278 KNNSPPLS-------LYGQLLWREFF-YTTATNNSCFDKMEGNPVCV 316
>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
Length = 540
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 142/339 (41%), Gaps = 56/339 (16%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTG 174
A R + WFR LRVHDN +L+ TA N + V P++ DP + + G
Sbjct: 3 AQRSTLVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +++ DL L+ S L V GKP V + K+ + + ++ +
Sbjct: 58 ANRWRFLQQTLEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSLT 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ K EG++V+ T+Y+ + + K LG+ P Y F V +++ K +
Sbjct: 118 RDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGV 177
Query: 294 LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQ-VWHGGKPAANSMKGGETEALQRLKK 352
++LK +P+ P D D M Q V + N GGETEAL+R+
Sbjct: 178 PEKLKKMPT----PPKDEVEQKDSAAYDCPTMEQLVKRPEELGPNKFPGGETEALRRM-- 231
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDE 399
++ D I+ A F + +SP+L GCLS R +
Sbjct: 232 -------------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQK 278
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
LK+ S + S L+ +L+WR+F+
Sbjct: 279 LKEIIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
Length = 828
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 126/323 (39%), Gaps = 56/323 (17%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ ++ WFR LR+HDN +L ++ S+ V+ DP G S+ G +K FL+
Sbjct: 47 KKHTVHWFRKGLRLHDNPALREGLKDAASLRCVFVIDPWFAGSSNVGINKW-----RFLL 101
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+ + DL +NL+ S L V G+P L +L K G + + + I
Sbjct: 102 QCLEDLDRNLRQLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGKVRDHNISEM 161
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
K+ I+V TLY L+ + K G P Y F+ + ++ E L +
Sbjct: 162 CKELNIDVISAVSHTLYKLERIIEKNNGRAPLTYNQFQAIIASMDAPPQPEPAITLAAIG 221
Query: 302 SRGDVEPGD------IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
+ D +P+L +LG +W GGETEAL RL++
Sbjct: 222 RAVTPQCDDHDDKYGVPTLEELGFETEGLKPPIW----------VGGETEALARLERHL- 270
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
G + G +SP+L GCLS R + +L I A
Sbjct: 271 --------GTQTG-------------LSPYLRFGCLSTRLFYYQLTDLYKKIKKAYP--- 306
Query: 416 GESGSSGAGSNWLMFELLWRDFF 438
L +L WR+FF
Sbjct: 307 ---------PLSLHGQLFWREFF 320
>gi|340720203|ref|XP_003398531.1| PREDICTED: cryptochrome-1-like [Bombus terrestris]
Length = 574
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 132/326 (40%), Gaps = 44/326 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLTGATTFRCVFVLDPWFAGSTNVGINK-----WRFLLQ 75
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 76 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALC 135
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVE-----IRKTIEALDQL 297
K+ GI V TLY LD++ + G+ P Y F+ V ++ + A
Sbjct: 136 KELGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASMDPPEPSVSTVTSACIGS 195
Query: 298 KGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P + D + +P+L +LG + VW GGE+EAL RL++
Sbjct: 196 AYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVW----------VGGESEALARLERHLER 245
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASK 412
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 246 KAWVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS- 302
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 303 ---------------LHGQLLWREFF 313
>gi|345483304|ref|XP_001606405.2| PREDICTED: cryptochrome-1 [Nasonia vitripennis]
Length = 627
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 138/337 (40%), Gaps = 48/337 (14%)
Query: 117 NNGAAI----RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDK 172
++G AI ++ ++ WFR LR+HDN SL + + V+ DP G ++ +K
Sbjct: 52 SDGLAIQGDGKKHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSANVSINK 111
Query: 173 TGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDE 232
FL++ + DL ++L S L V G+P L +L + G ++ +
Sbjct: 112 -----WRFLLQCLEDLDRSLHQLNSRLFVIRGQPADALPKLFREWGTTSLTFEEDPEPYG 166
Query: 233 VKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVE----- 286
+E I K+ GI V TLY LD++ K G+ P Y F+ + ++
Sbjct: 167 RVRDENITTLCKELGITVVQRVSHTLYKLDEIIEKNGGKPPLTYHQFQNVIARMDPPEYP 226
Query: 287 IRKTIEALDQLKGLPSRGDVEP-GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETE 345
A P + D + +P+L +LG M+ VW GGETE
Sbjct: 227 AAAVTAACIGSAYTPLKDDHDDFFGVPTLEELGFDTEGLMAPVW----------VGGETE 276
Query: 346 ALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----K 401
AL RL++ G S+ + +SP+L GCLS R + +L K
Sbjct: 277 ALARLERHLERKAWVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLADLYK 334
Query: 402 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K +I S L +LLWR+FF
Sbjct: 335 KIKKTIPPLS----------------LHGQLLWREFF 355
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 126/287 (43%), Gaps = 25/287 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR+ DN +L A ++ +Y D S+G + G +L S+
Sbjct: 5 AVVWFRNDLRLADNPALTAAARSGAPIIALYVLD-----DESAGEWRMGSASRWWLHHSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L +L G L +R G+ E VL + GA AVY +R ++ + +I++ ++
Sbjct: 60 TALAHDLARLGVTLTLRRGRAEFVLENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQLRA 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT-IEALDQLKGLPSRG 304
G+ V+ F GS L+ L K GE + F E + A +L P
Sbjct: 120 RGVMVESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLAAEAPDAPLPAPKKLTAAP--- 176
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
P +L D L + W GG + + GE AL+RL +FA K
Sbjct: 177 ---PPASDALADWRLLPT---KPDWAGG--LRETWRAGEHAALERLAEFAK-------KR 221
Query: 365 NKDGNHDSIYGANFSC-KISPWLAMGCLSPRSMFDELKKTATSISAA 410
+D D + A ++SP L G +SPR ++ E+ + A AA
Sbjct: 222 VRDYKIDRDFMAREGVSRMSPHLHFGEVSPRRIWAEITEAAGDAGAA 268
>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
Length = 538
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 132/324 (40%), Gaps = 40/324 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL N + + ++ DP S+ G +K FL++
Sbjct: 4 KHTVHWFRKGLRLHDNPSLRHGLNGAKTFRCIFILDPWFANASNVGINK-----WRFLLQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL ++L S L V G+P +L +L K G + + ++ I A
Sbjct: 59 CLEDLDRSLMKLNSRLFVIRGQPADILPKLLKEWGTTCLTFEEDPEPFGRVRDQNIMAMC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVE--------IRKTIEAL 294
+ I V TLY L+ + + G P Y F+ V +E + T+
Sbjct: 119 RGMNITVISLVAHTLYKLECIIERNGGRAPLTYHQFQSVVASMESPPLPVPPVTSTVVG- 177
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
D + + D + G +P+L +LG + VW +GGE+EAL RL++
Sbjct: 178 DAVSPISDDHDEKYG-VPTLEELGFDTEGLLPGVW----------QGGESEALSRLERHL 226
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
G S+ + +SP+L GCLS R + +L I A
Sbjct: 227 ERKAWVASFGKPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLNDLYRKIKKAV--- 281
Query: 415 DGESGSSGAGSNWLMFELLWRDFF 438
S G ++LWR+FF
Sbjct: 282 ---PPLSLHG------QVLWREFF 296
>gi|333899133|ref|YP_004473006.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
gi|333114398|gb|AEF20912.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
Length = 483
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 148/334 (44%), Gaps = 59/334 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR DLRV DN +L A +V V+ P + + P + F + ++
Sbjct: 4 LMWFRTDLRVTDNSALAAAMQAGPTV-AVFLLSPGQWQQHDD-----APCKVDFWLRNLV 57
Query: 187 DLRKNLQARGSDLVVRVGKPET----VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L+ L++R + V+ LA+ + A AV+ + E +E + +E + AA
Sbjct: 58 ELSRELKRLNVPLLIREADQWSAAPKVIGTLAQELQASAVHVNEEYGVNESRRDEAVSAA 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ + G+ HLD L FK G + T G + + + +GV ++ AL +L
Sbjct: 118 LDELGVNFH-------SHLDRLLFKPGSVLTRTGTYFKVYSQFRGVCYQRLHTALPKLVA 170
Query: 300 LP---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P ++ ++ IP + + S A+ W PA GE A +RL++FA E
Sbjct: 171 PPKAQAKLEMAADPIPEQVAGFDTPSQALRDAW----PA------GEDAARERLQRFADE 220
Query: 357 YQAQPPKGNKDGNHDSIYGANF-----SCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ + HD+ +F + ++S +LA G LSPR + AA
Sbjct: 221 W--------IEDYHDN---RDFPIRPGTSQLSAYLAAGVLSPRQ----------CLHAAL 259
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
N GE + G+ + EL+WR+F+ I Y
Sbjct: 260 NANGGEFENGNQGAVTWINELIWREFYAHILVGY 293
>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
Length = 538
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 139/330 (42%), Gaps = 44/330 (13%)
Query: 121 AIRRASIVWFRNDLRVHDNESL------NTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
A RR + WFR LRVHDN +L A E V P++ DP + + G
Sbjct: 3 AQRRTLVHWFRKGLRVHDNPALFQIFEVARAAPEKFYVRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +S+SDL + L+A + L V GKP + L + + ++ V
Sbjct: 58 ANRWRFLQQSLSDLDQQLRALNTRLFVVRGKPVDIFPGLFERWQVQLLTYETDIEPYAVL 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ +G++V T+Y+ + + + LG+ P Y F V+ +++ K +
Sbjct: 118 RDAAVQQLAASQGVKVDTHCSHTIYNPELVIVRNLGKPPITYQKFLGIVEKLKLPKVLNK 177
Query: 294 LDQL-KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
+L G+ D + D P+L L V N GGE+EAL+R++
Sbjct: 178 PKKLPDGMQPLADSDIYDYPTLEQL----------VKRPEDLGINKFPGGESEALRRMEA 227
Query: 353 FAAEYQA----QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
A+ Q + PK + S + +SP+L GCLS R + L++
Sbjct: 228 SLADEQWVAKFEKPKTAPNSLEPS------TTVLSPYLKFGCLSARLFHERLQEILARQP 281
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
SK S G +LLWR+F+
Sbjct: 282 KHSK-----PPVSLVG------QLLWREFY 300
>gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
Length = 476
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A + + VL V+ P + + + P +A+F+ ++
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQH-----EMAPRQAAFIHANL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEA 241
+++ L RG LV + V+ A A +A++ +R+ +E+K +++ +
Sbjct: 60 LQVQQALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQR 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + GEM Y FR+ I++ E+ ++ LP
Sbjct: 120 RLSGQVI-CQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAF----IQRLTES--DVRSLP 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ E G +P S A + + A GE AL+RL+ F E Q Q
Sbjct: 173 APKRREGGALPV--------SVAPAAFDYPQVEAGADFPAGEDAALKRLRAFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+D +I G + +SP+LA+G LSPR F+ L+ + + +SG+
Sbjct: 224 YLQQRD--FPAIAGTS---SLSPYLAIGVLSPRQCFNRLRAECPQVL-----ENSDSGAF 273
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
G WL EL+WR+F+R + Y
Sbjct: 274 G----WLN-ELIWREFYRHLMVAY 292
>gi|302035591|ref|YP_003795913.1| deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
gi|300603655|emb|CBK39986.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrospira defluvii]
Length = 481
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 142/327 (43%), Gaps = 48/327 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFR DLR+ DN +L+ A E ++P++ FD + G G F++ +
Sbjct: 4 LVWFRRDLRLSDNPALSAACQECREIVPLFVFDEPLLRSHAFGSACVG-----FMLGCLE 58
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+LR++L G L R+G P +++ A DAVY +R+ ++ + +++ + +
Sbjct: 59 ELRRSLALHGVSLAWRMGDPVESVLQAADDFKVDAVYWNRDYEPAALERDREVQQRLAQQ 118
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G V+ F ++ +++ G+ Y +R++ + R L + P G
Sbjct: 119 GRTVRTFKDHVVFEAEEVRGLSGDPFQRYSAYRDRW-WTKWRAAAPPLLGIPSFPPAGKA 177
Query: 307 EPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
D PS+ DLG +S M W ++ GE A RL+ F
Sbjct: 178 STPDSRKWPSVTDLGY-ESVPM---W---------IEPGEQAAHARLQWFL--------- 215
Query: 364 GNKDGNHDSIYGANF-----SCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ H + G N + K+SP L G +S R++ +++A +K G +
Sbjct: 216 --RGPVHQYVTGRNLPAIDGTSKLSPHLRFGTVSARTL------VHAALNALAK---GGA 264
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKY 445
S W+ EL+WR+FF+ + +
Sbjct: 265 VSRADVFTWVD-ELVWREFFQQVLAAF 290
>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 474
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/330 (22%), Positives = 148/330 (44%), Gaps = 50/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A+ E +V+ ++C D + D R +++I +
Sbjct: 6 LFWHRRDLRISDNVGLTQASQEGQTVVGIFCLDENILKR-----DDIASARVTYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+K + GS L++ GKP + +LA + A AVY + +V K + +++ ++
Sbjct: 61 HLQKRYKQIGSQLLIMSGKPIEAIPKLATFLEAKAVYWNLDVEPYSRKRDRQVKENLEAA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK-----TIEAL--DQLKG 299
I+VK FW L+ +++ + + Y F + +G + ++ L DQL+
Sbjct: 121 NIQVKTFWEQLLHSPEEIFTSTKKPYSVYTPFWKNWQGKKKSNPLNTPVLKGLTEDQLQY 180
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA----A 355
G + D+P+ LG + + ++ GET AL++L+KF+ +
Sbjct: 181 TKKIGVI---DLPTAKQLGFNWDNKL------------ILEPGETAALEKLEKFSNGAIS 225
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
YQ Q + DG + ++S L G + R+++ + ++ + ++ + +
Sbjct: 226 SYQEQRNFPSLDG----------TSQLSVALKFGTIGIRTVWAKTQELIENCYSSEVFEN 275
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E+ E+ WR+F++++ Y
Sbjct: 276 IETWQK---------EIAWREFYQYVMYHY 296
>gi|422604194|ref|ZP_16676211.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
str. 301020]
gi|330887853|gb|EGH20514.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. mori
str. 301020]
Length = 482
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 146/330 (44%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQLKVEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKAGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP ++ + S A+ +W PA GE EA +R+ F A
Sbjct: 169 RTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLW----PA------GEAEARRRMATF-A 217
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ Q K +D + ++S +LA G +SPR + AA N
Sbjct: 218 DAQISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
Length = 556
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 137/322 (42%), Gaps = 48/322 (14%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
FR LR+HDN +L A S + PVY D +++ SSS G R +FL++S+ DL
Sbjct: 9 FRKGLRLHDNPTLVAALETSDIIYPVYILD-KNFMTSSS---VIGSKRWNFLLQSIEDLH 64
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
NLQ S L V G ++VL E + V E+ +E+I A ++ G +
Sbjct: 65 CNLQKLNSCLFVIQGDYQSVLREHVQKWHITQVTFDLEIEPYYKGMDERIRAMGQELGFD 124
Query: 250 VKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV------EIRKTIEALDQLKGLPS 302
V TLY + L G+ P Y F + + + T+E +
Sbjct: 125 VVSKVAHTLYDVKSILALNYGKPPLTYKNFLRVLSVLGDPDKPARQITLEDFIKCTTPTE 184
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK------FAAE 356
E IP DLG+ + A + KGGE+EAL RL++ + A
Sbjct: 185 FAAEEYYRIPKPEDLGICRD------------CAPNWKGGESEALCRLEQHLEKQGWVAN 232
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
+Q P+ + S G +SP+ + GCLS R + L ++I A SK N
Sbjct: 233 FQK--PQTVPNSLLPSTTG------LSPYFSFGCLSARVFYHRL----SNIYAQSK-NHS 279
Query: 417 ESGSSGAGSNWLMFELLWRDFF 438
S G +LLWR+FF
Sbjct: 280 LPPVSLQG------QLLWREFF 295
>gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
Length = 481
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 135/329 (41%), Gaps = 49/329 (14%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFR+DLR+ DN +L+ A +E V+ V+ P+ + P +A+FL +++
Sbjct: 5 LVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPKQWAAHD-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDL----VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L RG L L + + DA++ +++ +E++ +E
Sbjct: 60 HLLQAALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ I F S L + EM + FR + ++ K
Sbjct: 120 QLNRRSIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQ 179
Query: 302 SRGDV-----EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
+ G + EP D P Q + SQ+ GE ALQRL+ F E
Sbjct: 180 NAGAITLTPLEPFDYP--------QQSVDSQL----------FPAGEEAALQRLRSFCRE 221
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q Q +D + + +SP+LA+G LSPR F+ L+ +
Sbjct: 222 -QVQDYLQQRD-----LPAVAGTSGLSPYLALGILSPRQCFNRLRAECPDLL-------- 267
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
ES SGA + WL EL+WR+F+R + Y
Sbjct: 268 ESSDSGAFT-WLN-ELIWREFYRHLLVAY 294
>gi|350420124|ref|XP_003492407.1| PREDICTED: cryptochrome-1 [Bombus impatiens]
gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
Length = 574
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 132/326 (40%), Gaps = 44/326 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLTGATTFRCVFVLDPWFAGSTNVGINK-----WRFLLQ 75
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 76 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALC 135
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVE-----IRKTIEALDQL 297
K+ GI V TLY LD++ + G+ P Y F+ V ++ + A
Sbjct: 136 KELGISVVQKVSHTLYKLDEIIERNGGKPPLTYHQFQNVVASMDPPEPSVPTVTSACIGS 195
Query: 298 KGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P + D + +P+L +LG + VW GGE+EAL RL++
Sbjct: 196 AYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVW----------VGGESEALARLERHLER 245
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASK 412
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 246 KAWVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS- 302
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 303 ---------------LHGQLLWREFF 313
>gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
YPIII]
gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis
YPIII]
Length = 487
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 141/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWATHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ P + S L Q + SQ+ GE ALQRL++F E Q Q
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQL----------FPAGEDAALQRLRRFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ +D ++ G SC +SP+L +G LSPR F+ L + + E+ S
Sbjct: 224 YRQYRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADS 270
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GA + WL EL+WR+F+R + Y
Sbjct: 271 GAFT-WLN-ELIWREFYRHLLVAY 292
>gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
32953]
gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia
pseudotuberculosis IP 32953]
Length = 487
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 141/324 (43%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFRNDLRV DN +L+ A + SV+ V+ P + P +A+FL +++
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHG-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L ARG L T LV+ + D+++ ++ +E ++ +
Sbjct: 60 QHLQAALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAV 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ I + F S L + EM + FR I++ + + + P
Sbjct: 120 QLSGRAITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAF----IQRLLMSDNHCVPAP 175
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ P + S L Q + SQ+ GE ALQRL++F E Q Q
Sbjct: 176 -KARHAPPVLLSPLPFDYPQQSVDSQL----------FPAGEDAALQRLRRFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+ +D ++ G SC +SP+L +G LSPR F+ L + + E+ S
Sbjct: 224 YRQYRDL--PAVPGT--SC-LSPYLVLGVLSPRQCFNRLWAESPEML--------ENADS 270
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
GA + WL EL+WR+F+R + Y
Sbjct: 271 GAFT-WLN-ELIWREFYRHLLVAY 292
>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1, partial [Passer domesticus]
Length = 361
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 135/318 (42%), Gaps = 47/318 (14%)
Query: 134 LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQ 193
LR+HDN +L A ++ S+ +Y DP S+ G + R FL++S+ DL +L+
Sbjct: 3 LRLHDNPALQEALRDATSLRCIYILDPWFAASSAVGIN-----RWRFLLQSLEDLDNSLR 57
Query: 194 ARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253
S L V G+P V L K G + + + + I K+ G+EV
Sbjct: 58 KLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIE 117
Query: 254 WGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPSRGDVEPGD- 310
TLY LD + G P Y F+ + +E+ +K + + + + D++
Sbjct: 118 NSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHD 177
Query: 311 ----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK------FAAEYQAQ 360
+PSL +LG VW +GGETEAL RL K + A Y+
Sbjct: 178 DVYGVPSLEELGFPTDGLAPAVW----------QGGETEALARLDKHLERKAWVANYER- 226
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
P+ N + S G +SP+L GCLS R + L + + + S
Sbjct: 227 -PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV---------KRNS 270
Query: 421 SGAGSNWLMFELLWRDFF 438
+ S L +LLWR+FF
Sbjct: 271 TPPLS--LYGQLLWREFF 286
>gi|11991490|emb|CAC19669.1| putative lectin [Hordeum vulgare subsp. vulgare]
Length = 63
Score = 81.3 bits (199), Expect = 9e-13, Method: Composition-based stats.
Identities = 34/59 (57%), Positives = 48/59 (81%)
Query: 254 WGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIP 312
WG TLYHLDDLPF+L +MP++YGGFRE VKG+E+RK ++A +++K +P + +EPG P
Sbjct: 3 WGGTLYHLDDLPFRLNDMPSSYGGFREAVKGLEVRKVLDAPEEVKCVPMKNVLEPGPAP 61
>gi|71733434|ref|YP_273281.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71553987|gb|AAZ33198.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 482
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 146/330 (44%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQLKIEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP ++ + S A+ +W PA GE EA +R+ F A
Sbjct: 169 RTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLW----PA------GEAEARRRMATF-A 217
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ Q K +D + ++S +LA G +SPR + AA N
Sbjct: 218 DAQISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
Length = 529
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 137/327 (41%), Gaps = 43/327 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+R +I FR LR+HDN +L A S V PVY D R + SS G R FL
Sbjct: 1 MRHRTIHLFRKGLRLHDNPALLAALQSSEVVYPVYILD-RAFMTSSM---HIGALRWHFL 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ DLR +L+ GS L+V G+ E+V+ + + V E+ + E I
Sbjct: 57 LQSLEDLRSSLRQLGSCLLVIQGEYESVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRG 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVK-----GVEIRKTIEALD 295
++ G +V G +LY+ L G P Y F + V +R
Sbjct: 117 LGEELGFQVLSLMGHSLYNTQRILELNGGTPPLTYKRFLRILSLLGDPEVPVRNPTAEDF 176
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
Q P G E +P DL + + + +GGE+E LQRL++ A
Sbjct: 177 QRCSPPELGLAECYGVPLPTDLKIPPE------------SISPWRGGESEGLQRLEQHLA 224
Query: 356 EY----QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ PK + S G +SP+ + GCLS RS F L ++I A +
Sbjct: 225 DQGWVASFTKPKTVPNSLLPSTTG------LSPYFSTGCLSVRSFFYRL----SNIYAQA 274
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K + S L +LLWR+FF
Sbjct: 275 KHHSLPPVS-------LQGQLLWREFF 294
>gi|386824611|ref|ZP_10111744.1| deoxyribodipyrimidine photolyase [Serratia plymuthica PRI-2C]
gi|386378568|gb|EIJ19372.1| deoxyribodipyrimidine photolyase [Serratia plymuthica PRI-2C]
Length = 476
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 87/324 (26%), Positives = 147/324 (45%), Gaps = 41/324 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A + + VL V+ P + + + P +A+F+ ++
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPTARVLAVFIATPGQWRQH-----QMAPRQAAFIHANL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEA 241
+++ L RG LV ++ A A DA++ +R+ +E++ + + E
Sbjct: 60 LQVQQALADRGIPLVCHQCDDFAAAIDWLVAYCAQERVDALFYNRQHEINELRRDRQAER 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + GEM Y FR+ I++ E ++ LP
Sbjct: 120 RLSGQVI-CQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAF----IQRLSEF--DVRSLP 172
Query: 302 SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ E G +P SAA + + GE ALQRL+ F E Q Q
Sbjct: 173 APKPREGGALPV--------SAAPAAFDYPSAGVGADFPAGEEAALQRLRVFCRE-QVQD 223
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
+D +I G + +SP+LA+G LSPR F+ L+ + + +SG+
Sbjct: 224 YLQQRD--FPAIAGTS---SLSPYLAIGVLSPRQCFNRLRAECPQVL-----ENSDSGAF 273
Query: 422 GAGSNWLMFELLWRDFFRFITKKY 445
G WL EL+WR+F+R + Y
Sbjct: 274 G----WLN-ELIWREFYRHLMVAY 292
>gi|416014635|ref|ZP_11562385.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. B076]
gi|416029112|ref|ZP_11572001.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422406636|ref|ZP_16483660.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|320325702|gb|EFW81763.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327379|gb|EFW83393.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881872|gb|EGH16021.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 482
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 146/330 (44%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQLKIEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP ++ + S A+ +W PA GE EA +R+ F A
Sbjct: 169 RTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLW----PA------GEAEARRRMATF-A 217
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ Q K +D + ++S +LA G +SPR + AA N
Sbjct: 218 DAQISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
Length = 546
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 139/339 (41%), Gaps = 68/339 (20%)
Query: 127 IVWFRNDLRVHDNESL------NTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASF 180
I WFR LRVHDN +L A + V P++ DP + + G R F
Sbjct: 10 IHWFRKGLRVHDNPALMQIFTTAQAAPKKFYVRPIFILDP-----GILDWMQVGANRWRF 64
Query: 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
L +++ DL K L+ S L V GKP V L K+ + + ++ + ++
Sbjct: 65 LQQTLDDLDKQLRQLNSRLYVVRGKPIEVFPRLFKSWNVELLTFESDIEPYAQTRDAAVQ 124
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
K GI+V+ T+Y+ + + K LG+ P Y F V+ +++ K ++ ++L
Sbjct: 125 KIAKAAGIKVETHCSHTIYNPELVIAKNLGKAPITYQKFLALVEKLKLAKVLDKPEKLDA 184
Query: 300 L--PSRGDVEPG-----DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
L PSR ++E D PS L V + N GGETE L+R+
Sbjct: 185 LTQPSRDELEQENDKVYDCPSQEQL----------VKKPNELGPNIFPGGETEGLRRM-- 232
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDE 399
+D +D ++ A F + +SP+L GCLS R +
Sbjct: 233 -------------EDSLNDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFYQR 279
Query: 400 LKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
LK+ S + S G ++LWR+F+
Sbjct: 280 LKEILAKHPKHS-----QPPVSLVG------QVLWREFY 307
>gi|149635020|ref|XP_001507425.1| PREDICTED: cryptochrome-2 [Ornithorhynchus anatinus]
Length = 582
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 133/317 (41%), Gaps = 47/317 (14%)
Query: 135 RVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQA 194
R+HDN +L A + SV VY DP SS G + R FL++S+ DL +L+
Sbjct: 20 RLHDNPALQAALRGARSVRCVYILDPWFAASSSVGIN-----RWRFLLQSLEDLDTSLRK 74
Query: 195 RGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254
S L V G+P V L K G + + + + I K+ G+EV
Sbjct: 75 LNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIVKMAKEAGVEVVTEN 134
Query: 255 GSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEAL--DQLKGLPSRGDVEPGD 310
TLY LD + G+ P Y F+ + +E+ +K + + Q++G + D
Sbjct: 135 SHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVSCVTSQQMEGCKAEIQDNHDD 194
Query: 311 ---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK------FAAEYQAQP 361
+PSL +LG VW +GGETEAL RL K + A Y+
Sbjct: 195 TYGVPSLEELGFPTDGLGPAVW----------QGGETEALARLDKHLERKAWVANYER-- 242
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421
P+ N + S G +SP+L GCLS R + L + K N S
Sbjct: 243 PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV----KRNSTPPLS- 291
Query: 422 GAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 292 ------LYGQLLWREFF 302
>gi|430003702|emb|CCF19491.1| Deoxyribodipyrimidine photo-lyase [Rhizobium sp.]
Length = 476
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 137/312 (43%), Gaps = 38/312 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR DLR+ DN +L+ A V+ ++ + S+ G G +A +L S+
Sbjct: 9 IVWFRRDLRLADNAALSAAVETGAPVIALFIRE-----GSAGGGMPFGAAQAWWLHHSLL 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
LR+ L RG DL+ G+ TVLV++A+ GA+ +Y +R D+ + I +K E
Sbjct: 64 ALRQALHDRGGDLLFFTGEAATVLVQVAQQTGANQIYLNRSYERDD--QDRDIARRLKAE 121
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGD 305
GI V F G L+ + G+ + F + ++ + E R+ + A D ++G S
Sbjct: 122 GIAVHAFHGQLLHDPSHIRTGGGKPFRVFTPFWKALQALGEPREPLAAPDAMRGASSTPP 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
E + LL +A + W GE A RL+ F E+ + K
Sbjct: 182 SEQLEDWGLLPTKPDWAAGFGETW----------TPGEAGARFRLEDF-VEHGLREYKSV 230
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
+D + + +SP LA G ++P A + AAS ++G+ A
Sbjct: 231 RD-----FPARDLTSHLSPHLAHGEVTP----------AQAWHAASGLDNGDP----AQI 271
Query: 426 NWLMFELLWRDF 437
EL WRDF
Sbjct: 272 THFRRELAWRDF 283
>gi|424924871|ref|ZP_18348232.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens R124]
gi|404306031|gb|EJZ59993.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens R124]
Length = 481
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 144/334 (43%), Gaps = 59/334 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR HDN +L A +V VY P+ + + K F + ++
Sbjct: 3 LIWLRSDLRQHDNTALAAAAARGPTV-AVYLLSPQQWLEHDDAACKV-----DFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L L L++R + VL+EL + AV+ + E E + + + A
Sbjct: 57 ELTSRLGELNIPLLLRTADHWDQAPAVLLELCVQLNVQAVHVNEEYGIHESQRDAAVAVA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTN-------YGGFREKVKGVEIRKTIEALD 295
+K +GI + LD L FK G + T + FR KV + +++ AL
Sbjct: 117 LKTKGIAFHSY-------LDQLLFKPGTVLTKTDTYFQVFSQFR-KVCYERLHRSMPALV 168
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
+ G ++ +++ +P+ + + S ++ +W PA GE EA RL FA
Sbjct: 169 KTPGKQAKLNIDSDPVPAAVAGFATPSESLRALW----PA------GEQEARHRLDTFAD 218
Query: 356 E----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
YQ++ K G + ++SP+LA G +SPR + AA
Sbjct: 219 AQIDYYQSERDFPAKPG----------TSQLSPYLAAGVISPRQ----------CLQAAL 258
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ N GE S G+ + ELLWR+F++ I Y
Sbjct: 259 QSNQGEFDSGKVGAVTWINELLWREFYKHILVGY 292
>gi|257482020|ref|ZP_05636061.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|422598313|ref|ZP_16672576.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330988593|gb|EGH86696.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 482
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 145/330 (43%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQFKVEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP ++ + S A+ +W PA GE EA +R+ F A
Sbjct: 169 RTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLW----PA------GEAEARRRMATF-A 217
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ Q K +D + ++S +LA G +SPR + AA N
Sbjct: 218 DAQISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|311748125|ref|ZP_07721910.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
gi|126576610|gb|EAZ80858.1| deoxyribodipyrimidine photolyase [Algoriphagus sp. PR1]
Length = 432
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 11/157 (7%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+++ S+ WFR DLR+ DN L A + VLP++ FD DKT R SF+
Sbjct: 1 MKKLSVFWFRRDLRLEDNTGLYYALQQETDVLPLFIFDRTILDDLE---DKTDA-RVSFI 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ + +L++ L+ +GS L+V+ G PE V EL K A+Y +R+ K + IE
Sbjct: 57 HDQIQNLKEELEKKGSTLLVKYGTPEEVYQELIKKFEIQAIYTNRDYEPYAKKRDRAIEK 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF 278
+++GI S L D + F+ GE+ G F
Sbjct: 117 LAEEKGI-------SFLTFKDQVIFEPGEILNGSGEF 146
>gi|422297090|ref|ZP_16384734.1| deoxyribodipyrimidine photolyase [Pseudomonas avellanae BPIC 631]
gi|407991591|gb|EKG33413.1| deoxyribodipyrimidine photolyase [Pseudomonas avellanae BPIC 631]
Length = 482
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 141/330 (42%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAALQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L L++R PE VL L K + + ++ + E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDQAPE-VLSSLCKQLNVEGLHLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
AM+ +G+ HLD L FK G + T G + + + K V + EA+ +
Sbjct: 116 AMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP + + S ++ +W PA GE EA +R++ FA
Sbjct: 169 HTPEAQQPLSIKSDAIPDQVKGFTTPSKSLRDLW----PA------GEVEASRRIEAFAD 218
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
E Q K +D + ++S +LA G +SPR + AA N
Sbjct: 219 E-QISYYKDERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALASNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|378952815|ref|YP_005210303.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens F113]
gi|359762829|gb|AEV64908.1| Deoxyribodipyrimidine photolyase [Pseudomonas fluorescens F113]
Length = 483
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 143/346 (41%), Gaps = 57/346 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L A + V VY P + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALAAAAAQGPCV-AVYLTSPEQWRTHDDA-----PCKIDFWLRNLG 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L L L++R + VL++L + + AV+ + E +E + + + A
Sbjct: 57 ALSVALDELNIPLLIRDAAHWQQAPHVLLKLCRELNIGAVHINEEYGLNETRRDAEAARA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+ D+GIE HLD L FK G + T G + + + + V + +L L
Sbjct: 117 LNDQGIEFHS-------HLDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHFSLPSLAA 169
Query: 300 LPSR---GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P R + +P+ +D S A+ +W PA GETEA +RL F +
Sbjct: 170 TPVRQAPTGITRDPVPTQVDGFAPPSEALRALW----PA------GETEARRRLDTFVDQ 219
Query: 357 ----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
YQ + K G + ++S +L G +SPR + AA +
Sbjct: 220 HIDDYQGERDFPAKPG----------TSQLSAYLVAGVVSPRQ----------CLHAALQ 259
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVPAT 458
N GE S AG + ELLWR+F++ I Y + P T
Sbjct: 260 ANQGEFESGSAGVVTWINELLWREFYKHILVGYPRVSRHRAFRPET 305
>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
Length = 535
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 133/333 (39%), Gaps = 36/333 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN SL + + V+ DP G S+ G +K FL++ +
Sbjct: 20 VHWFRRGLRLHDNPSLREGLKGARTFRCVFVLDPWFAGSSNVGINKW-----RFLLQCLE 74
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL ++L+ S L V G+P L +L K G A+ + + + ++
Sbjct: 75 DLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTALTFEEDPEPFGGVRDHNLTTLCQEL 134
Query: 247 GIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV------EIRKTIEALDQLKG 299
GI V TLYHL D+ + G P Y F + + E T +L+
Sbjct: 135 GISVVQKVSHTLYHLQDIIDRNGGRAPLTYHQFLAIIACMGPPPQPEPPVTFNSLNGAHT 194
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
+ E +P+L +LG + VW +GGE+EAL RL++
Sbjct: 195 PLTDDHDEKYGVPTLEELGFDTEGRLPPVW----------QGGESEALARLERHLERKAW 244
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
G S+ + +SP+L GCLS R + +L I A
Sbjct: 245 VASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAF------PP 296
Query: 420 SSGAGSNWLMFELLWRDFFRFITKKYSSAKKVV 452
S G +LLWR+FF K + K++
Sbjct: 297 LSLHG------QLLWREFFYCAATKNPNFDKMI 323
>gi|148241324|ref|YP_001226481.1| deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
gi|147849634|emb|CAK27128.1| Deoxyribodipyrimidine photolyase [Synechococcus sp. RCC307]
Length = 467
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 138/317 (43%), Gaps = 40/317 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L + + V+ V+ DP + + P R FL+ES+
Sbjct: 5 LFWHRRDLRLADNLGLAAVSAITPEVMGVFVLDPAELEHPT-----MAPARRWFLLESLR 59
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ + GS L++ G P +L LA+ +GA V +R+V + + ++ AA+K
Sbjct: 60 ELQQRWRQAGSQLLLLEGNPVELLPRLAQQLGAAGVAWNRDVEPLVRQRDRELAAALKAI 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+ V W L + L G+ YG + ++ E + K +P+
Sbjct: 120 GVRVAADWDQLLVPPEQLKTGGGDPYRVYGPY---------WRSWEKQPKAKPVPA---- 166
Query: 307 EPGDIPSLLDLGLSQSAAMSQV----WHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
P ++ +LL LS +++V W G + GET AL++L+ FAA
Sbjct: 167 -PSELKALLKPDLSGLPVLNEVPVEPWEGAD--LCPCRPGETAALEQLEHFAARAMEHYC 223
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+G ++ G + +S L G LSPR+ + A S+ W+ S
Sbjct: 224 EGR------NLPGDEGTSTLSAALRAGSLSPRTAW------AASLDV---WSHCRSDEQR 268
Query: 423 AGSNWLMFELLWRDFFR 439
EL WR+F++
Sbjct: 269 QSVTVWQQELAWREFYQ 285
>gi|340376121|ref|XP_003386582.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 544
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 129/293 (44%), Gaps = 33/293 (11%)
Query: 129 WFRND-LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSD 187
WFR D LR+ DN + + A + + V DP + SG +R FL+ES+ D
Sbjct: 50 WFRLDSLRLSDNPAFHHAVSSGKRLKAVVILDPWFNSNNKSG-PSANVWR--FLLESLHD 106
Query: 188 LRKNLQAR--GSDLVVRVGKPETVLVEL-AKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
L LQ R + L + +G+P VL L K ++ + + S + K +E I+ A
Sbjct: 107 LDSRLQKRPYNTRLNIYLGQPTVVLSALFHKWNVSELTFQASQTSLESKKHDELIKFAAD 166
Query: 245 DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGL-- 300
+ ++ F+ TLY+ +D L G P +Y R + V R+ D + L
Sbjct: 167 SQNVKTTSFYSHTLYNPEDILRANNGRFPHSYKELRRLLPLVGRPREPFPEPDPVLVLLR 226
Query: 301 ---PSRGDVEPGD--IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P D+E + IPSL DLG + NS GGETE L RL F +
Sbjct: 227 QNSPEDQDLEEPENRIPSLQDLGFGLEETL---------YTNSWVGGETEGLSRLSNFCS 277
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
QP ++ I + P++ GCLS R +F +L++ A++ S
Sbjct: 278 RRSTQP--------NEPITWLISKDSLGPYIRFGCLSVRQLFSQLRQYASTSS 322
>gi|429544803|gb|AGA01579.1| cryptochrome 2 [Rhyparobia maderae]
Length = 586
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 131/324 (40%), Gaps = 40/324 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G S+ G +K FL++
Sbjct: 8 KHTVHWFRKGLRLHDNPSLREGLKCAKTFRCVFILDPWFAGSSNVGINKW-----RFLLQ 62
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL ++L+ S L V G+P L +L K G + + ++ I A
Sbjct: 63 CLEDLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDQNIMAMC 122
Query: 244 KDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
K+ GI V TLY L++ + G+ P Y F+ + + E K +
Sbjct: 123 KELGISVITRVSHTLYRLENIIENNGGKAPLTYHQFQTVIASMGPPPPAEPNISPKFM-- 180
Query: 303 RGDVEP-GD-------IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
G P GD +P+L +LG + VW GG+P EAL RL++
Sbjct: 181 NGAYTPIGDDHDDKYGVPTLEELGFDIEGLLPPVWQGGEP----------EALARLERHL 230
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
G S+ + +SP+L GCLS R + +L I A
Sbjct: 231 ERKAWVASFGRPKMTPQSLLASQTG--LSPYLRFGCLSTRLFYYQLTDLYEKIKKAC--- 285
Query: 415 DGESGSSGAGSNWLMFELLWRDFF 438
S G +LLWR+FF
Sbjct: 286 ---PPLSLHG------QLLWREFF 300
>gi|434387598|ref|YP_007098209.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
gi|428018588|gb|AFY94682.1| deoxyribodipyrimidine photolyase [Chamaesiphon minutus PCC 6605]
Length = 478
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 135/323 (41%), Gaps = 47/323 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLRV D+ L A N + V+ V+CFD ++ D P R ++L+ +
Sbjct: 6 LFWHRRDLRVSDSIGLAQACNTNARVIGVFCFD-----RAILTNDSVAPARVTYLVGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L K+ + GS L+ G P + LA + A AVY H ++ +E I +K +
Sbjct: 61 SLAKDYRRAGSQLLFVEGNPVVKIPLLATTLKAQAVYWHLDIEPYSQTRDESIATTLKSD 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF------REKVKGVEIRKTIEALDQLKGL 300
GIEV W L+ ++ + T Y F R K VE++ LD + L
Sbjct: 121 GIEVHTNWDQLLHAPSEIITGNKQPYTVYTPFWRNWNSRSKPAPVEVKLPPCQLDATE-L 179
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA----AE 356
V D+P+ DLG + + ++ G + A + L +F E
Sbjct: 180 TDLAQVPTIDLPTAKDLGFTWENPL------------KLEPGTSAAARELAEFCDRSICE 227
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Y Q N+ ++ G + +S L G + R+++ A +I A ++
Sbjct: 228 YDEQ-------RNYPALTGTS---GLSAALKFGVIGIRTVW------AATIEAMAQ---T 268
Query: 417 ESGSSGAGSNWLMFELLWRDFFR 439
S + AG EL WR+F++
Sbjct: 269 SSDEARAGITTWQQELAWREFYQ 291
>gi|422679531|ref|ZP_16737804.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|331008878|gb|EGH88934.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 482
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 145/330 (43%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQFKVEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP ++ + S A+ +W PA GE EA +R+ F A
Sbjct: 169 RTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLW----PA------GEAEARRRMATF-A 217
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ Q K +D + ++S +LA G +SPR + AA N
Sbjct: 218 DAQISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|289624749|ref|ZP_06457703.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289648378|ref|ZP_06479721.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 2250]
gi|422584088|ref|ZP_16659203.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330868910|gb|EGH03619.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 482
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 145/330 (43%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQFKVEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP ++ + S A+ +W PA GE EA +R+ F A
Sbjct: 169 RTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLW----PA------GEAEARRRMATF-A 217
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ Q K +D + ++S +LA G +SPR + AA N
Sbjct: 218 DAQISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
Length = 540
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 149/340 (43%), Gaps = 59/340 (17%)
Query: 122 IRRASIV-WFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTG 174
++R+++V WFR LRVHDN +L+ +A N + V P++ DP + + G
Sbjct: 3 VKRSTLVHWFRKGLRVHDNPALSHIFSAANAAPGKYFVRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +++ DL L+ GS L V GKP V + K+ + + ++ +
Sbjct: 58 ANRWRFLQQALEDLDNQLRKLGSRLFVVRGKPAEVFPRIFKSWRVEILTFETDIEPYSLS 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ K G++V+ T+Y+ + + K LG+ P Y F V+ +++ K + A
Sbjct: 118 RDASVQKLAKAAGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEQLKLPKVLGA 177
Query: 294 LDQLKGL--PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
++L+ + P +VE D + + Q + + N GGETEAL+R+
Sbjct: 178 PEKLQNITTPPNDEVEQEDSAAYDCPTMEQLVKRPE-----ELGPNKFPGGETEALRRM- 231
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFD 398
+D D ++ A F + +SP+L GCLS R
Sbjct: 232 --------------EDSLKDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQ 277
Query: 399 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+LK+ S + S L+ +L+WR+F+
Sbjct: 278 KLKEIIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 147/321 (45%), Gaps = 42/321 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I W R DLRV DN L+ A +S ++ ++C D + D P R ++++ +
Sbjct: 6 IFWHRRDLRVSDNIGLSQAYQKSSKLVGLFCLDSNLLNR-----DDIAPARVNYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+K+ Q GS L++ G+P ++ ++A A+ D V+ + +V + +++++ A++++
Sbjct: 61 HLQKSYQKLGSQLLIFQGEPTKIIPKVADALNVDCVFWNNDVEPYSKERDKQVKEALEEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTN-YGGF-REKVK--GVEIRKTIEALDQL--KGL 300
I+ K +W L+ ++ K P Y F R VK +I ++IE L+ L + +
Sbjct: 121 SIQSKTYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEEKADIVESIEKLESLSDEEI 180
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA--AEYQ 358
+ D+ D+P+ DLG S A + ++ GET A ++L F+ A Y
Sbjct: 181 NTVKDLGLIDLPTAKDLGYSWDAPL------------LLEPGETAAKEQLNYFSDNAIYS 228
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
Q + ++ + + K+SP G + R ++ + + + S
Sbjct: 229 YQEQR--------NLPAIDATSKLSPAFKFGIIGIREVWQ---------ATVEAYENTRS 271
Query: 419 GSSGAGSNWLMFELLWRDFFR 439
+ E+ WR+F++
Sbjct: 272 DEARENIQTWQQEIAWREFYQ 292
>gi|333028704|ref|ZP_08456768.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
gi|332748556|gb|EGJ78997.1| putative deoxyribodipyrimidine photo-lyase [Streptomyces sp.
Tu6071]
Length = 481
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 142/341 (41%), Gaps = 75/341 (21%)
Query: 112 RPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD 171
RP+ P A++ ASIV + +DLR+HD+ L A E+ V+P++ DP G GF
Sbjct: 17 RPVRPPAEPAVK-ASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDP---GIKKVGFH 72
Query: 172 KTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHD 231
RA+FL + + DL L+ RG LVVR G+P V+ EL + GA+ V+ VS
Sbjct: 73 AAN--RAAFLADCLGDLDAGLRERGGRLVVRAGEPAQVVRELVGSTGAERVHVAAGVSAY 130
Query: 232 EVKSEEKIEAAMKDEGIE-VKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT 290
+++ AA++ G E V++ T ++ + + + + +R+
Sbjct: 131 ARNRADRLRAALEGTGAELVEHEAVITALPPGEVVPGSKDHFAVFTPYHRQWSAQHLREP 190
Query: 291 IEALDQL--------KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGG 342
+ A +L G+P R DVE G+S A +GG
Sbjct: 191 LGAPRKLSVPSKVRSDGVPRREDVE----------GVSPGLA---------------RGG 225
Query: 343 ETEALQRLKKFAAEYQAQPPKGNKDGN------HDSIYGANFSCKISPWLAMGCLSPRSM 396
E E RL + +DG HD + G + + ++SP+L G LS
Sbjct: 226 EREGRARLADW-----------RRDGISRYEDLHDDLAG-DGTSRLSPYLHFGALSAAEC 273
Query: 397 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 437
+ GAG++ + +L WRDF
Sbjct: 274 VHRARAV-----------------GGAGADAFVRQLCWRDF 297
>gi|432862559|ref|XP_004069915.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 562
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 134/326 (41%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + S ++ +Y DP G S+ G + R FL+ +
Sbjct: 5 TVHWFRKGLRLHDNPALRDSIRGSDTLRCIYILDPWFAGSSNVGIN-----RWRFLLHCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + I+ +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEYDSEPFGKERDAAIQKLASE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEALDQLK 298
+EV TLY LD + G P Y F+ ++ VE+ R T+E +
Sbjct: 120 AAVEVVVRISHTLYDLDRIIELNGGPPPLTYKRFQALINRMDAVELPAERITLETMQSCV 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
S + + SL +LG + VW GGETEAL RL K
Sbjct: 180 TPVSENHDDKFGVLSLEELGFETEGLPTAVW----------PGGETEALLRLERHLERKA 229
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A Y+ P+ N + + G +SP+L GCLS R + +L T + K
Sbjct: 230 WVANYER--PRMNANSLLATPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKVK 277
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 278 KNSSPPLS-------LYGQLLWREFF 296
>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
Length = 530
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 136/328 (41%), Gaps = 44/328 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+R +I FR LR+HDN +L A S V PVY D R + SS G R FL
Sbjct: 1 MRHRTIHLFRKGLRLHDNPALLAALQSSEVVYPVYILD-RAFMTSSM---HIGALRWHFL 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++S+ DLR +L GS L+V G+ + V+ + + V E+ + E I A
Sbjct: 57 LQSLEDLRSSLCQLGSCLLVIQGEYDAVVRDHVQKWNITQVTLDAEMEPFYKEMEANIRA 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVK-----GVEIRKTIEALD 295
++ G EV G +LY+ L G P Y F + + IR
Sbjct: 117 LGEELGFEVLSLMGHSLYNTQRILELNGGTPPLTYKRFLHILSLLGDPEMPIRNLTAEDF 176
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
Q P E +P DL + + + +GGE+E LQRL++ A
Sbjct: 177 QRCSPPELCLAECYRVPLPTDLKIPPE------------SISPWRGGESEGLQRLEQHLA 224
Query: 356 EYQA-----QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+ PK + S G +SP+ +MGCLS RS F L ++I A
Sbjct: 225 DRSGWVASFTKPKTVPNSLLPSTTG------LSPYFSMGCLSVRSFFYRL----SNIYAQ 274
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
+K + S L +LLWR+FF
Sbjct: 275 AKHHSLPPVS-------LQGQLLWREFF 295
>gi|423097276|ref|ZP_17085072.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q2-87]
gi|397885561|gb|EJL02044.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens Q2-87]
Length = 483
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/337 (25%), Positives = 141/337 (41%), Gaps = 65/337 (19%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+ DN +L A + V VY P + P + F + +++
Sbjct: 3 LIWLRSDLRLRDNTALAAAAAQGPCV-AVYLISPEQWRAHDDA-----PCKIDFWLRNLA 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L LQ L++R + VL+ L + + AV+ + E H+E + + ++ A
Sbjct: 57 SLNVALQELNIALLIREAPHWRQAPQVLLTLCRELNISAVHVNEEYGHNESRRDAEVAQA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K +G+ + LD L FK G + T G + + + + V + +L L
Sbjct: 117 LKSQGVGFHSY-------LDQLLFKPGSVLTKTGNYFQVFSQFRKVCYSRLHYSLPSLVA 169
Query: 300 LPSR-------GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
P R D PG I S A+ +W PA GETEA +RL
Sbjct: 170 TPKRQAPTGLVSDPVPGQIKGF----APPSQALRDLW----PA------GETEARRRLDT 215
Query: 353 FAAE----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
F + YQ++ + G + ++S +LA G +SPR +
Sbjct: 216 FVDQHIDAYQSERDFPARPG----------TSQLSAYLAAGVVSPRQ----------CLH 255
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
AA + N GE S G+ + ELLWR+F++ I Y
Sbjct: 256 AALQANQGEFESGCVGTVTWVNELLWREFYKHILVGY 292
>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
Length = 519
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 144/324 (44%), Gaps = 44/324 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN +L A + + P++ DP + K++ + G R FLIE++
Sbjct: 5 TIHWFRKGLRLHDNPALIAALKDCRHIYPLFLLDPW-FPKNT----RIGINRWRFLIEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G P VL +L K + + ++++ K+
Sbjct: 60 KDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAKE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEAL--DQLKGLP 301
G+EV TLY++D + + G+ P Y + VK + +K I A + ++G+
Sbjct: 120 YGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDMRGVS 179
Query: 302 ---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE-- 356
S E IP+L DLGL S+ + GGE EAL+RL +
Sbjct: 180 TPLSDDHEEKFGIPTLEDLGLDTSSL----------GPHLFPGGEQEALRRLDEHMERTN 229
Query: 357 --YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ + PK + + S + +SP++ GCLS R+ + L
Sbjct: 230 WVCKFEKPKTSPNSLIPS------TTVLSPYVRFGCLSARTFWWRLADVYR--------- 274
Query: 415 DGESGSSGAGSNWLMFELLWRDFF 438
G++ S S L +LLWR+FF
Sbjct: 275 -GKTHSDPPVS--LHGQLLWREFF 295
>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
Length = 671
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 135/327 (41%), Gaps = 46/327 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 23 KHTVHWFRKGLRLHDNPSLKEGLAGASTFRCVFVLDPWFAGSTNVGINK-----WRFLLQ 77
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEAA 242
+ DL +L+ S L V G+P L +L K G D + V+ + I A
Sbjct: 78 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTDLTFEEDPEPFGRVR-DHNISAL 136
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVE-----IRKTIEALDQ 296
K+ GI V TLY LD++ + G+ P Y F+ V G++ A
Sbjct: 137 CKELGISVVQRVSHTLYRLDEIIERNSGKPPLTYHQFQNVVAGMDPPEPPAPTVTAACIG 196
Query: 297 LKGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P + D + +P+L +LG + + VW GGE+EAL RL++
Sbjct: 197 SAYTPLKDDHDDHYGVPTLEELGFDTESLLPPVW----------VGGESEALARLERHLE 246
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAAS 411
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 247 RKAWVASFGRPKMTPQSLLPSQ--TGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS 304
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 305 ----------------LHGQLLWREFF 315
>gi|149188415|ref|ZP_01866708.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
gi|148837633|gb|EDL54577.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
Length = 472
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/377 (22%), Positives = 158/377 (41%), Gaps = 67/377 (17%)
Query: 86 LSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTA 145
++ S +S++ + + ++LG NG + RR I WF +DLR+HDN+ L A
Sbjct: 1 MTNSLLSYQGCYCVSDVWEKMTLG--------NGMSKRRG-IYWFNHDLRLHDNKLLQKA 51
Query: 146 NNESVSVLPVYCFDPRD--YGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDL---- 199
+ E V L FD Y + + + F ++++ +L ++L G L
Sbjct: 52 S-EHVDRLHCVYFDELKTMYDRRFLPVEIDDSAKREFKMQALGELNQSLMQLGQVLHQVS 110
Query: 200 VVRVGKPETVLVELAKAIGADAVYAHREVSH--DEVKSEEKIEAAMKDEGIEVKYFWGST 257
V + + + L ++ +Y S D V ++ A +K I + +
Sbjct: 111 VTSLDEAVSQLEQMFDYYSITDLYVANSASWYIDYVVTK----ALLKRTDIVLHRDDTES 166
Query: 258 LYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL-------KGLPSRGDVEPGD 310
L+H LPF L ++P ++ F+ K++ + + + QL GLP+ EP
Sbjct: 167 LFHQTLLPFDLEDLPHSFTRFKNKMESIVVPSPSQTTTQLPRPMNNRDGLPASYGCEPSS 226
Query: 311 IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNH 370
+ +S++GGE L ++ + A A K ++
Sbjct: 227 LK----------------------LHSSVRGGELAGLGHVRDYFATQAALSYKSTRN--- 261
Query: 371 DSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMF 430
+ + S K S WLA G +SPR++ ++L + + S + W++F
Sbjct: 262 -ELDNWSSSTKFSLWLANGNVSPRAVVNQLHRFE------------QKHGSNESTYWILF 308
Query: 431 ELLWRDFFRFITKKYSS 447
ELLWR++F + + KY +
Sbjct: 309 ELLWREYFHWYSHKYGA 325
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 118/270 (43%), Gaps = 22/270 (8%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A+IVWFRNDLR+ D+ +L A V+ ++ D +++G K G +L +S
Sbjct: 8 ATIVWFRNDLRLCDHPALTAAVKRGGPVIALFVLD-----DAAAGCWKLGGASRWWLAKS 62
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L ++ RG+ L++R G E++L L GA AVY R EEK+ +
Sbjct: 63 LEALSHDIAQRGARLILRRGDTESILKRLVDESGATAVYVTRGYEPWAKGLEEKLHKSFG 122
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPSR 303
G+ K F G L +DL G + F R K K + A L +P
Sbjct: 123 GSGVVFKRFGGRLLREPEDLRTSSGAAYQVFTPFWRVFRKEFSAPKALAAPRHLGPVP-- 180
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
D + D+ + A W GG A + + GE A RLK F +E +
Sbjct: 181 ------DAIASDDISDWKLAPTKPDWSGG--LAEAWRPGERGAQLRLKNFVSEGLS---- 228
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSP 393
N D D + A + ++SP LA G +SP
Sbjct: 229 -NYDDGRDRL-NAEGTSRLSPHLAFGEISP 256
>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
Length = 512
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 142/329 (43%), Gaps = 49/329 (14%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + ++ DP G S+ G +K FL++
Sbjct: 4 KHTVHWFRKGLRIHDNPSLREGLINAKTFRCIFILDPWFAGASNVGINK-----WRFLLQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+SDL +L+ S L V G+P L +L + G + ++ I+
Sbjct: 59 CLSDLDNSLKKLNSRLFVIKGQPAEALPKLFRQWGTTNFTFEEDPEPFGRVRDQNIKVMC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLP-FKLGEMPTNYGGFREKVKGVE-IRKTIEALD-QLKG- 299
+ GI V TLY LD + G+ P Y F+ ++ ++ + + ++D + G
Sbjct: 119 SELGISVITRCSHTLYQLDKIINVNGGKAPLTYHLFQNILECIDPPERAVPSIDKEFLGN 178
Query: 300 --LPSRGDVEP-GDIPSLLDLGLSQSAAMSQ-VWHGGKPAANSMKGGETEALQRL----- 350
P++ D + +P++ +LG + +++ VW GGETEAL RL
Sbjct: 179 AFTPTKYDHDKIFGVPTVEELGFEEINNIARHVW----------VGGETEALIRLQCHLE 228
Query: 351 -KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
K F A + PK S G ++P+L GCLS R F EL + I
Sbjct: 229 RKAFIASFGK--PKMTPQSLLASPTG------LAPYLKFGCLSTRLYFSELNELYKKIRK 280
Query: 410 ASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ + S G +LLWRDFF
Sbjct: 281 S------QPPLSLHG------QLLWRDFF 297
>gi|217976568|ref|YP_002360715.1| deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
Length = 486
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 139/314 (44%), Gaps = 34/314 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR+DLR+ DNE+L A + +L VY + ++GF G +L S+
Sbjct: 10 AIVWFRDDLRLADNEALAAALSTGGPLLCVYILE-----DGTAGFRPLGGAARWWLHHSL 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L +++ A+G L + G+ +L LA+A GA + R E+ + ++A K
Sbjct: 65 QALGQDIAAKGGRLDLFCGEARRILPALAEAAGARIICWTRRYGGPEMAVDAALKAQFKT 124
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLP-SR 303
G+E K F G L+ D+ G Y + R ++ + + A D+L P R
Sbjct: 125 SGVEAKSFNGHLLHEPWDITRGDGHGFAVYTPYWRAASAAAQVGEPLPAPDRLPAAPIPR 184
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
G + I +L L W GG AA + GE A +RLK F + +
Sbjct: 185 GALRTTSIEALALLPEKPD------WAGGLRAA--WRPGENGAQERLKAF---LEGEIAS 233
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
+ + N S A+ ++SP L G + PR +F ++ + W++ ++
Sbjct: 234 YSLERNRPS---ADAVSRLSPHLRFGEIGPRQIFAAVR---------TAWDN----AAQK 277
Query: 424 GSNWLMFELLWRDF 437
G + EL WR+F
Sbjct: 278 GGVKFLAELGWREF 291
>gi|383863231|ref|XP_003707085.1| PREDICTED: cryptochrome-1-like [Megachile rotundata]
Length = 589
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 131/326 (40%), Gaps = 44/326 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNVGINK-----WRFLLQ 75
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 76 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALC 135
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRK------TIEALDQ 296
K+ GI V TLY LD++ K G+ P Y F+ V +++ + T +
Sbjct: 136 KELGISVVQKVSHTLYKLDEIIEKNGGKPPLTYHQFQNVVACMDVPEPPVPTVTFACVGS 195
Query: 297 LKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
+ +P+L +LG + VW GGE+EAL RL++
Sbjct: 196 AYTPVKEDHDDHYGVPTLEELGFDTEGLLPPVW----------VGGESEALARLERHLER 245
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASK 412
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 246 KAWVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS- 302
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 303 ---------------LHGQLLWREFF 313
>gi|320589803|gb|EFX02259.1| DNA photolyase [Grosmannia clavigera kw1407]
Length = 893
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 152/383 (39%), Gaps = 71/383 (18%)
Query: 127 IVWFRNDLRVHDNE-----SLNTANNESVSVLPVYCFD----------PRDYGKSSS--- 168
I R DLRV DN S N +LP+Y F PR +S
Sbjct: 24 IYILRRDLRVADNRILHEVSTNPTKYNFTHMLPLYVFAANQIEVSGFIPRSSNTTSPYPE 83
Query: 169 ------GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD-- 220
G+ + GP+RA F+ E ++D++++L++ GS L +RVG V+ + + A+
Sbjct: 84 AKSKIVGYWRCGPHRARFISECLADVKQSLESLGSGLSIRVGMLPEVVERMIAGLTAEGH 143
Query: 221 ---AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD------LPF----- 266
AV+ E +E E +I ++ GI Y W + + + + +PF
Sbjct: 144 RVSAVWMAEEDGSEEEADENEIGTMCEELGIHY-YLWPNEKHFIAEYVPSIPVPFTISGV 202
Query: 267 ------------KLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPS----------- 302
L E+P Y +++K + + R + + LP+
Sbjct: 203 YTDKPSNHAIVPSLDELPDTYTQYQKKCEPLRQRPAEPLPVPRASTLPTYLPAPTQSLPF 262
Query: 303 -----RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+ +E I LL P A ++GGETEA +RL+
Sbjct: 263 VIPDDKDGIEAALIAPLLRRDCDNRFLYEVKICKKVPWATILEGGETEANKRLRDLFLPE 322
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
A G + D + G FS ++S +L+ GCL+ R + L + + A +G
Sbjct: 323 NAGLVAGYAE-KKDGLLGRQFSSRLSGYLSQGCLTARLVHQALVQYEDGSNDAMAAAEGF 381
Query: 418 SGSSGAGSNWLMFELLWRDFFRF 440
G GS+ L ELLWRDF R
Sbjct: 382 GGGENEGSHALRKELLWRDFMRL 404
>gi|356529875|ref|XP_003533512.1| PREDICTED: uncharacterized protein LOC100813721 [Glycine max]
Length = 654
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 120/247 (48%), Gaps = 37/247 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I+WF++DLR D+ +L A + S++P+Y FD R + S D+T ++ +V
Sbjct: 7 AILWFKHDLRTDDHPAL-LAASAFPSLVPIYVFDHRILSRFS---DET----LELVLLAV 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSH------DEVKSEEKI 239
DLRK+L+ RGSDLV+R G E V+ +LA + A V+A +EV + D VK +++
Sbjct: 59 EDLRKSLKDRGSDLVIRFGNAENVIQQLATEVKATCVFAEQEVEYELRFIIDVVK--QRL 116
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE--------------KVKGV 285
++ +G W + Y + DL +P +Y F++ K+ G
Sbjct: 117 KSVSVPQGSPRIELWRTPFYDIKDLE----NLPASYDEFKKLRLSVTTPLQLSVSKLPGA 172
Query: 286 EIR---KTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGG 342
EI + + D +KG + + G+ SL+ +++ +V G S + G
Sbjct: 173 EIELDWGVLPSYDDIKGFLTSNQQKSGEKWSLMKETSAETILRRKVLKSGNNIERSSRFG 232
Query: 343 ETEALQR 349
T++ +R
Sbjct: 233 LTQSRER 239
>gi|434402615|ref|YP_007145500.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
gi|428256870|gb|AFZ22820.1| deoxyribodipyrimidine photolyase [Cylindrospermum stagnale PCC
7417]
Length = 480
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 140/327 (42%), Gaps = 54/327 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S V+ V+C DP + D P R ++++ +
Sbjct: 6 LFWHRRDLRIADNTGLAAAQRQSPKVVGVFCLDPDILER-----DDIAPARVTYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ GS L++ G P V+ +LA+A+ A AV+ + +V K + I ++ ++
Sbjct: 61 ALQERYIQAGSQLLILHGPPVVVIADLAEALKAKAVFWNWDVEPYSQKRDRTIINSLTEK 120
Query: 247 GIE-VKYFWGSTLYHLDDLPFKLGEMP-TNYGGFREKVKGVEIRKTIEALDQLKGLPS-- 302
GI+ + W L+ +++ F + P T Y F + K +E L+ +GL +
Sbjct: 121 GIQFLNQNWDQILHSPEEI-FSGAKTPYTVYTPFWKNWSSKPKAKPVETLENAEGLTADE 179
Query: 303 ------RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-- 354
G +E +PS DLG VW G + GE A RL+ F
Sbjct: 180 QEIAKLAGAIE---LPSAKDLGF--------VWEG----ELVISPGEAAAQARLEAFTNN 224
Query: 355 --AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
EYQ Q DG + ++S L G + R+++ +I A
Sbjct: 225 AITEYQEQRNFPAVDG----------TSQLSAALKFGVIGIRTVWQ------ATIEALE- 267
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFR 439
+ SG + A EL WR+F++
Sbjct: 268 --NSRSGETEASIRTWQQELAWREFYQ 292
>gi|407363810|ref|ZP_11110342.1| deoxyribodipyrimidine photolyase [Pseudomonas mandelii JR-1]
Length = 481
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 141/329 (42%), Gaps = 49/329 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A +V VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLHDNTALSAAAARGPTV-AVYLLSPAQWLEHDD-----APCKVDFWLRNLG 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L L L++R + VL++L + + A+AV+ + E E + + +
Sbjct: 57 ELSDALGELNIPLLIRHAPRWDEAPQVLLKLCQQLNAEAVHVNEEYGVHESRRDTAVAET 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K GI+ +LD L F G + T G + + + + V + +L
Sbjct: 117 LKAHGIDF-------FSYLDQLLFNPGTVLTKTGTYFQVFSQFRKVCYERLHRSLPGRVA 169
Query: 300 LPSRGDVEP---GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P+ D P DIPS + S ++ Q+W PA GE EA +RL F A+
Sbjct: 170 KPAVQDPLPISSDDIPSSVKGFDMPSESLRQLW----PA------GEAEAQRRLDTF-AD 218
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K +D + ++S +LA G +SPR + AA N G
Sbjct: 219 AQIDYYKSERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALHSNQG 263
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E S G+ + ELLWR+F++ I Y
Sbjct: 264 EFESGKVGAVTWINELLWREFYKHILVGY 292
>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
Length = 639
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 135/328 (41%), Gaps = 48/328 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + ++ VY DP G S+ G + R FL++S+
Sbjct: 5 SVHWFRKGLRLHDNPALLEALNGADTLRCVYFLDPWFAGASNLGVN-----RWRFLLQSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P + L K + + + + I+ +
Sbjct: 60 EDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKKLACE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP--- 301
G+EV TLY LD + G+ P Y F+ V +E +G+
Sbjct: 120 AGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLVSSMEP-PDPPLSSPDRGMMGKC 178
Query: 302 ----SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
S + +P L +LG VW GGE+EAL+R+++
Sbjct: 179 VTPISENHRDKYGVPLLEELGFDTEGLAPAVW----------PGGESEALKRMERHLGPD 228
Query: 353 --FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
A + + PK N S G +SP+L GCLS R + +L T +
Sbjct: 229 STVAWQENFERPKMNASPLMASPLG------LSPYLRFGCLSCRLFYCKL----TQLYKK 278
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S S L ++LWR+FF
Sbjct: 279 VKKNMNPSIS-------LYDKILWREFF 299
>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
Length = 548
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 146/332 (43%), Gaps = 46/332 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
S++WFR+ LR+HDN SL++A E PV+ FD G G++ R +L+E
Sbjct: 4 GSVLWFRHGLRLHDNPSLHSALEEKGFPFFPVFIFDGETAGTKVVGYN-----RMRYLLE 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ DL L+ G L++ GKP V L + G + ++ ++ +++A
Sbjct: 59 ALEDLDNQLKKHGGRLIMIKGKPNVVFRRLWEEFGIRRLCFEQDCEPVWRARDDSVKSAC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGV-EIRKTIEALD----QL 297
K+ G+ K TL+ D + G + P Y F V + + + + +D +
Sbjct: 119 KEIGVVCKEHVSHTLWEPDTVIKANGGIPPLTYQMFLHTVATIGDPPRPVSDIDFTGVKF 178
Query: 298 KGLPSRGDVE---PGDIPSLLDLGLS-QSAAMSQVWHGGKPAANSMKGGETEALQRL-KK 352
LP E P DLG+ ++ + + GGET AL+++ ++
Sbjct: 179 GSLPESFYHEFTVYDKTPKPEDLGVFLENEDIRMI---------RWVGGETTALKQMQQR 229
Query: 353 FAAEYQA------QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
A EY+ P GN D + G S +SP L GCLS RS + ++
Sbjct: 230 LAVEYETFLRGSYLPTHGNPD-----LLGPPIS--LSPALRFGCLSVRSFYWSVQDLFRQ 282
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ + G + A S+++ +L+WR++F
Sbjct: 283 V------HQGRLATQSA-SHFITGQLIWREYF 307
>gi|213967212|ref|ZP_03395361.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
T1]
gi|301381052|ref|ZP_07229470.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
Max13]
gi|302062191|ref|ZP_07253732.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
K40]
gi|213928054|gb|EEB61600.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
T1]
Length = 482
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 140/330 (42%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L L++R PE VL L K + + +Y + E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDQAPE-VLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
+M+ +G+ HLD L FK G + T G + + + K V + +A+ +
Sbjct: 116 SMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP + + S + +W PA GE EA +R++ FA
Sbjct: 169 HTPEAQQPLSIKSDAIPDQVKGFSTPSKTLRDLW----PA------GEVEASRRIEAFAG 218
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
E Q K +D + ++S +LA G +SPR + AA N
Sbjct: 219 E-QISYYKDERD-----FPARPGTSQLSAYLAAGVISPRQ----------CLHAALASNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
Length = 540
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 144/340 (42%), Gaps = 58/340 (17%)
Query: 121 AIRRASIVWFRNDLRVHDNESLN---TANNES---VSVLPVYCFDPRDYGKSSSGFDKTG 174
A R + WFR LRVHDN +L+ TA N + V P++ DP + + G
Sbjct: 3 AQRSTLVHWFRKGLRVHDNPALSHIFTAANAAPGKYFVRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +++ DL L+ S L V GKP V + K+ + + ++ +
Sbjct: 58 ANRWRFLQQTLEDLDNQLRKLDSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSLT 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ K EG++V+ T+Y+ + + K LG+ P Y F V +++ K +
Sbjct: 118 RDAAVQKLAKAEGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVDQLKVPKVLGV 177
Query: 294 LDQLKGL--PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
++LK + P + +VE D + + Q + + N GGETEAL+R+
Sbjct: 178 PEKLKKMHTPPKDEVEQKDSAAYDCPTMEQLVKRPE-----ELGPNKFPGGETEALRRM- 231
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFD 398
++ D I+ A F + +SP+L GCLS R
Sbjct: 232 --------------EESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQ 277
Query: 399 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+LK+ S + S L+ +L+WR+F+
Sbjct: 278 KLKEIIKRQPKHS-----QPPVS------LIGQLMWREFY 306
>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome-1-like [Taeniopygia guttata]
Length = 527
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 140/320 (43%), Gaps = 37/320 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I FR +LR+HDN L A S ++ PVY D R + SS G R +FL++S+
Sbjct: 5 TIHLFRKELRLHDNPVLLAALESSEALYPVYILD-RAFLTSSM---HIGALRWNFLLQSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL KNL GS L+V G+ E VL + + V E+ + E I+ +
Sbjct: 61 EDLHKNLGQLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGAE 120
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVK-----GVEIRK-TIEALDQLK 298
G EV +LY+ L G P Y F + + +R T E + +
Sbjct: 121 LGFEVLSLVSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPELPVRNLTAEDFQRCR 180
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
P G E +P +DL +S + + +GGETE L+RL++ +
Sbjct: 181 A-PEPGLAECYRVPLPVDLKISPE------------SLSPWRGGETEGLRRLEQHLIDQG 227
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ +S+ + + +SP+ +MGCLS R+ F L ++I A +K +
Sbjct: 228 WVTSFAKPRTSPNSLLPS--TTGLSPYFSMGCLSVRTFFYRL----SNIYAQAKHHSLPP 281
Query: 419 GSSGAGSNWLMFELLWRDFF 438
S L +LLWR+FF
Sbjct: 282 VS-------LQGQLLWREFF 294
>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
Length = 526
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 136/334 (40%), Gaps = 44/334 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRAS 179
+ S++WFR LR+HDN +L + + V PV+ DP D S G G R
Sbjct: 3 KRSLMWFRKGLRLHDNPALLRSCEGASHVYPVFVLDPWFLAPDPTAPSPGSKLVGVNRIR 62
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL++S+ DL +NL+ GS L+V G P TV+ EL + + + + I
Sbjct: 63 FLLQSLEDLDENLRKHGSRLLVLHGNPTTVIPELLMKWQINELCFEFDTEPYAQDRDADI 122
Query: 240 EAAMKDEGIEVKYFWGSTLYH-LDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ G+EV TL++ +D + G+ P Y F K+ G L
Sbjct: 123 KKLATKYGVEVFSPVSHTLFNPIDTIRKNGGQTPLTYQAFL-KLTGKPPLPVTAPLQIPS 181
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
DV +P L DLG + GGETEAL+RL +K
Sbjct: 182 PPEDLNDVHVVPVPKLEDLGYVNLDE----------EFSPHPGGETEALRRLDKSLVNQK 231
Query: 353 FAAEYQAQPPKGNKDGNHD--------SIYGANFSCKISPWLAMGCLSPRSMFDELKKTA 404
+ +++ PKGN + + +N + P + GCLS R L
Sbjct: 232 WVCDFEK--PKGNPTAFIEPATTVLSPYLKASNLGFLLKP-MLFGCLSCRLFHQRL---- 284
Query: 405 TSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ ++ + SS S L +LLWR+FF
Sbjct: 285 -----LAVYSQNKKHSSPPVS--LEGQLLWREFF 311
>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
Length = 479
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 140/325 (43%), Gaps = 50/325 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S V+ V+C DP + D P R +++I S+
Sbjct: 6 LFWHRRDLRIADNIGLAAARQQSSKVVGVFCLDPNILER-----DDVAPARVTYMIGSLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ GS L++ G P + LA+A+ A AV+ + +V + I +KD+
Sbjct: 61 ELQQRYVQAGSQLLILHGDPVQAIPHLAEALNAKAVFWNWDVEPYSQTRDRAILDILKDK 120
Query: 247 GIE-VKYFWGSTLYHLDDLPFKLGEMPTNYGGF------REKVKGVEIRKTIEAL-DQLK 298
GI+ + + W L+ D++ T Y F + K K VE + E L + +
Sbjct: 121 GIQFLTHKWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPKAKPVETLQNAEGLTESEQ 180
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA--- 355
L + V+ +P+ DLG A + + GE A +L++F A
Sbjct: 181 ELAQKAGVKT--LPTAKDLGFFWDADL------------IIAPGEAAAQAKLEEFTAKAI 226
Query: 356 -EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
EYQ Q DG + ++S L G + R+++ + T ++ N
Sbjct: 227 TEYQEQRNFPAVDG----------TSQLSAALKFGVIGIRTVW---QATLEALE-----N 268
Query: 415 DGESGSSGAGSNWLMFELLWRDFFR 439
+S A W EL WR+F++
Sbjct: 269 SRSEEASAAIRTWQQ-ELAWREFYQ 292
>gi|298159718|gb|EFI00760.1| Deoxyribodipyrimidine photolyase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 482
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 145/330 (43%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA E L VY P + +S D + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMERGPTLAVYLLSPAQW-RSHDDAD----CKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L A L++R PE VL L + ++ ++E +E + ++ ++
Sbjct: 57 ELEKALGALNVPLLIREADTWDQAPE-VLSTLCTQFKVEGLHLNQEYGINETRRDQAVQK 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
A++ G++V + LD L FK G + T G + + + K V + +A+ Q
Sbjct: 116 ALEKAGVQVTSY-------LDQLLFKPGSILTKTGNYFQVFTQFKKVCYNRMHQAMPQPV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP ++ + S A+ +W PA GE EA +R+ F A
Sbjct: 169 RTPKAQQSLSIKSDSIPDQVEGFATPSKALRDLW----PA------GEAEARRRVATF-A 217
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ Q K +D + ++S +LA G +SPR + AA N
Sbjct: 218 DAQISYYKTERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALGSNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|424793391|ref|ZP_18219508.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796635|gb|EKU25108.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 473
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR DLR+HD+ +L+ A + +PVY P D G ++G S+L ++
Sbjct: 4 AIVWFRRDLRLHDHPALHAALAAGHTPVPVYVHSPGDEGAWAAGAASL-----SWLQRAL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L LQARGS L++R G ETVL EL GA AVY +R + +++ ++
Sbjct: 59 AALDAQLQARGSRLILRQGPAETVLRELIAECGAVAVYWNRRYEPATQPRDARLKRELRA 118
Query: 246 EGIEVKYFWGSTLY 259
+G+EV + G+ L+
Sbjct: 119 QGLEVHSYNGALLF 132
>gi|170780895|ref|YP_001709227.1| deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter
michiganensis subsp. sepedonicus]
Length = 508
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 141/330 (42%), Gaps = 39/330 (11%)
Query: 116 PNNGAAIRRA-------SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS 168
P++G+A R +IVW R+DLRV DN +++ A ++ +Y D + S+
Sbjct: 7 PDHGSADREGADQAHGPTIVWLRDDLRVADNPAMHAAVERGEPIVVLYVLD-----EESA 61
Query: 169 GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREV 228
G G +L S+S L ++L+ GS LV+R GK V+ +L + +GA AV +R
Sbjct: 62 GIRPLGGAARWWLHMSLSRLGESLRGLGSPLVLRRGKAADVVDDLVREVGAGAVLWNRRY 121
Query: 229 SHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EI 287
E+ + I+ + D G++V+ F GS L + K GE Y F + + E
Sbjct: 122 GGAEIAVDTAIKKDLGDRGLDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDREEP 181
Query: 288 RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEAL 347
RK A D L+ P P DL W G + GE L
Sbjct: 182 RKPFPAPDALEA--------PRKAPRSDDLDDWGLLPTKPDWAAG--LREACDPGEAAGL 231
Query: 348 QRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
QRL+ F ++ + +D A + ++S +L G +SP ++ +++T
Sbjct: 232 QRLEDF-VHHELEDYAAQRDEP-----AAMTTSRLSAYLRWGEVSPFQVWHRVQRTRGK- 284
Query: 408 SAASKWNDGESGSSGAGSNWLMFELLWRDF 437
+ G + + EL WR+F
Sbjct: 285 ---------KVGGDEVNATKFLSELGWREF 305
>gi|399992584|ref|YP_006572824.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
gi|398657139|gb|AFO91105.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 479
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/316 (27%), Positives = 133/316 (42%), Gaps = 48/316 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I W R DLR+ DN +L A V V+PV+ F+ D ++ + G ++
Sbjct: 12 IWWVRRDLRLADNPALAAAVAAGVPVIPVFIFETLDEDLGAAPRFRLG--------LGLA 63
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L K L+ RG+ L++R G + VL +L GA AV+ R + + I+ +K +
Sbjct: 64 HLAKELEQRGARLILRRGPAQEVLTQLITETGAGAVHWTRAYDPQAIARDTGIKEQLKGQ 123
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI K F G L+ + K G M Y + + V+ ++ D L PSR
Sbjct: 124 GIAAKSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDRDV-------DGLIAAPSRIPA 176
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
P P+ DL Q AA + G A + GE A +RL +F A
Sbjct: 177 -PAHWPTSDDLDSWQMAAAMR--RGADVVAQYCRVGEDAAQERLAEFLDTRVA------- 226
Query: 367 DGNHDSIYGA-NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG----ESGSS 421
D D + A + + +S LA G +SPR M W+ G +G S
Sbjct: 227 DYKQDRDFPAVDATSGLSENLAWGEISPRRM----------------WHHGLEARRAGKS 270
Query: 422 GAGSNWLMFELLWRDF 437
GA + E++WR+F
Sbjct: 271 GAEH--FLKEIVWREF 284
>gi|302745164|gb|ADL62685.1| cryptochrome 5, partial [Phreatichthys andruzzii]
Length = 411
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 137/320 (42%), Gaps = 36/320 (11%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI WFR LR+HDN +L A + + P++ DP + G + R FLIE++
Sbjct: 5 SIHWFRKGLRLHDNPALLAALKDCRHIYPLFLLDPWYPNNTHIGIN-----RWRFLIEAL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G P VL +L + + + ++++ ++
Sbjct: 60 KDLDSSLKKLNSRLFVVSGPPAEVLPKLFEKWKITRLTFEVDTEPYSQSRDKEVMKLAEE 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEA--LDQLKGLP 301
G+EV TLY++D + + G+ P Y F V + +K + A + +KG+
Sbjct: 120 NGVEVIPKISHTLYNIDRIIEENNGKPPMTYVRFLSVVNAIGSPKKPVPAPTKEDMKGVS 179
Query: 302 S---RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
+ E IP+L DLGL S+ N GGE EAL+RL +
Sbjct: 180 TPFFEDHEEEFRIPTLEDLGLDTSSL----------GPNLFPGGEQEALRRLDEHMERTT 229
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ +SI + + +SP++ GCLS R+ + L G+
Sbjct: 230 WVCKFEKPQTSPNSIIPS--TTVLSPYIRFGCLSARTFWWRLADVYR----------GKQ 277
Query: 419 GSSGAGSNWLMFELLWRDFF 438
S S L +LLWR+FF
Sbjct: 278 HSEPPVS--LHGQLLWREFF 295
>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 483
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 128/286 (44%), Gaps = 24/286 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFR DLR+ DN++LN A+ ++PVY +P +++G G +A +L S+
Sbjct: 10 ILWFRRDLRLDDNQALNAAHLSGRPIIPVYINEP-----AAAGTGPLGAAQAWWLHHSLE 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++L R +LV+ G VL + K GA+AV+ +R + + I+ ++ +
Sbjct: 65 ALDRSLHERQGELVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQ 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGD 305
IE + F G L+ L G Y F ++G E +EA +L+ R
Sbjct: 125 AIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRLASQRPA 184
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
E LL + + +W GE A +RL F E + + K N
Sbjct: 185 SETLKSWKLLPTKPDWAKGFADLW----------TPGEQGARERLSAF-VEDELKGYKEN 233
Query: 366 KDGNHDSIYGAN-FSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+D Y A + +SP LA+G +SP ++D + + + AA
Sbjct: 234 RD------YPAKPATSMLSPHLALGEISPARIWDATRGLSNRVPAA 273
>gi|376004880|ref|ZP_09782483.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
gi|375326730|emb|CCE18236.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
Length = 474
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 143/325 (44%), Gaps = 52/325 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP SG D P R +++I +
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDP----AILSG-DDIAPVRVAYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+++ Q GS L++ P L +LA A+GA AVY +++V + + +E ++ +
Sbjct: 61 CLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLK--G 299
GI+V+ FW L H + F + P KV RK I E D LK G
Sbjct: 121 GIKVETFWDQVL-HSPEAIFTGSKEPY-------KVYTPYWRKWIQQPKPEPCDTLKSRG 172
Query: 300 LP---SRGDVEPGDI--PSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
L + +E G I P+ DLG S ++ GET A RL+ F
Sbjct: 173 LTEAQEKAALEAGAIALPTAKDLGFIWSEPF------------ILEPGETAASDRLQLFC 220
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ +G N +I G + +SP L G + R+++ + ++ I A ++ +
Sbjct: 221 DRAIYEYDQGR---NFPAIDGTSL---LSPALRFGAIGIRTLWQKTQE----IMALTRSD 270
Query: 415 DGESGSSGAGSNWLMFELLWRDFFR 439
+ W E+ WR+F++
Sbjct: 271 EARDHI----QTWQQ-EIAWREFYQ 290
>gi|443710319|gb|ELU04573.1| hypothetical protein CAPTEDRAFT_178510 [Capitella teleta]
Length = 597
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 135/330 (40%), Gaps = 49/330 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ + WFR LR+HDN +L E+ + ++ DP G S G +K FL+
Sbjct: 17 KKNVLYWFRRCLRLHDNAALVEVLKEADTFRCIFILDPWFAGASQVGINK-----WRFLL 71
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+S+ DL L+ S L V G+P + +L + A+ + + + +
Sbjct: 72 QSLEDLDSRLRKLNSRLFVIRGQPTDIFPKLFQKWDISALAFEEDPEPFGKERDSAVCTK 131
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKV-------KGVEIRKTIEAL 294
+D GIEV TL++L + K G P Y F+ + + VE ++
Sbjct: 132 SQDAGIEVIIKTSHTLFNLQKILDKNSGVPPLTYKRFQRILARMDPPPRPVEAVTSVTIG 191
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ + S D + G +P+L DLG + VW KGGETEAL RL
Sbjct: 192 SVVTPINSDHDDQYG-VPTLEDLGFDTDNLEAAVW----------KGGETEALSRLDRHL 240
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ PK S G +SP+L GCLS R + L +
Sbjct: 241 ERKAWVASFEK--PKMTPQSLMASPTG------LSPYLRFGCLSTRLFYWRLTDLYRKV- 291
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K D G +LLWR+FF
Sbjct: 292 --KKRTDMPLSIHG--------QLLWREFF 311
>gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
Length = 473
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 132/311 (42%), Gaps = 38/311 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+R DLR+ D+ +L+ A N V+PV+ D KS +R I +++
Sbjct: 8 LLWYRRDLRLSDHPALSAAANAGRPVIPVFIKD-----KSVDALGAAPKWRLGLGIGALA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
D +L+ S L++R G VL L K GA VY R D VK + KI+ + ++
Sbjct: 63 D---SLEGVSSRLILREGDALEVLQALIKETGAGTVYWSRLYDPDSVKRDSKIKETLCND 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GIE K F G ++ + K G+ Y F VK ++ + A L S D
Sbjct: 120 GIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAPESWPDS 179
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
+ D G AAM + G + GE A RL F A A K +
Sbjct: 180 DALD-------GWDLGAAMDR---GADVVRPFVCLGEKAAQSRLGAFMAHGVAD-YKQTR 228
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
D I G + + +S L++G +SP + ++ +DG+ G+
Sbjct: 229 D-----IPGTDGTSNLSENLSLGEISPHQCWHAAQRAL---------HDGKQGAET---- 270
Query: 427 WLMFELLWRDF 437
+ EL+WR+F
Sbjct: 271 -FLKELVWREF 280
>gi|417321887|ref|ZP_12108421.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
gi|328470041|gb|EGF40952.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus 10329]
Length = 338
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 35/189 (18%)
Query: 257 TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLD 316
+L+ LPF L ++P + F + V+G++I I+A +L +P + +P+L
Sbjct: 29 SLFDESKLPFTLPDLPETFTQFGKCVEGIDIAHPIDAPSRLPPMP-----KDAQLPTLSS 83
Query: 317 LGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGA 376
+SA S GGE L +++ + A K ++G + G
Sbjct: 84 SCFDESALFS--------------GGEWSGLAHCRRYFSSGLASSYKETRNG----LDGM 125
Query: 377 NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRD 436
+S K SPWLA+GC+SPR ++ LK+ + A ND +NW+ FELLWR+
Sbjct: 126 AYSTKFSPWLALGCVSPRMIYAMLKQYEQTQGA----ND--------STNWIYFELLWRE 173
Query: 437 FFRFITKKY 445
+F + + Y
Sbjct: 174 YFYWYARCY 182
>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
Length = 788
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/322 (25%), Positives = 132/322 (40%), Gaps = 36/322 (11%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN +L + + V+ DP S+ G +K +R FL++
Sbjct: 34 KHTVHWFRKGLRLHDNPALREGLVNATTFRCVFIIDPWFASSSNVGINK---WR--FLLQ 88
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L + G A+ + + I
Sbjct: 89 CLEDLDSSLKKLNSRLFVVRGQPADALPKLFREWGTTALTFEEDPEPYGRVRDHNITTKC 148
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEA---LDQLKG 299
++ GI V TLY LD + + G+ P Y F+ + + + EA ++ L G
Sbjct: 149 REVGINVISRVSHTLYKLDKIIERNGGKAPLTYHQFQALIASMPPPQPAEAPISIETLNG 208
Query: 300 LPSRGDVEPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
+ V+ D +P+L +LG +W GGE+EAL RL +
Sbjct: 209 AKTPVSVDHDDRFGVPTLEELGFETEDLKPPMW----------MGGESEALARLDRHLER 258
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
G S+ + +SP+L GCLS R + +L + I
Sbjct: 259 KAWVASFGRPKMTPQSLLAS--QTGLSPYLRFGCLSTRLFYYQLTELYKKIKRV------ 310
Query: 417 ESGSSGAGSNWLMFELLWRDFF 438
S G ++LWR+FF
Sbjct: 311 RPPLSLHG------QILWREFF 326
>gi|402771126|ref|YP_006590663.1| DNA photolyase [Methylocystis sp. SC2]
gi|401773146|emb|CCJ06012.1| DNA photolyase, FAD-binding [Methylocystis sp. SC2]
Length = 480
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 22/278 (7%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFRNDLR+ DN +L A ++ +Y D S G +TG +L S+
Sbjct: 5 AIVWFRNDLRISDNPALLAAARTGAPLVALYILD-----DESPGEWRTGAAARWWLHHSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L ++L ARG L++R G+ V ++ GA AV+ ++ ++ + ++EA ++D
Sbjct: 60 RALSQSLAARGVSLILRRGRAPYVFEQIIAETGAGAVFWNKLYEPWAIRRDAELEAQLRD 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPSRG 304
+ +E F S L+ + L K GE + F R + + A + L P
Sbjct: 120 DAVETHCFHESVLFEPEKLRTKQGENFRIFTPFWRACLAAPPPERPHPAPEFLHAAPLPP 179
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
D + D LL + M +VW GET A L FA + G
Sbjct: 180 DSDDLDAWRLLPQNPDWAIGMRKVW----------LVGETAARAELADFARHH-----VG 224
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 402
+ D + S ++SP L G LSPR ++ + +
Sbjct: 225 DYKVERDFMGRVGVS-RLSPHLHFGELSPREVWHAISE 261
>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
Length = 638
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 136/332 (40%), Gaps = 57/332 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A N + ++ VY DP G S+ G + R FL++S+
Sbjct: 5 SVHWFRKGLRLHDNPALLEALNGADTLRCVYFLDPWFAGASNLGVN-----RWRFLLQSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P + L K + + + + I+ +
Sbjct: 60 EDLDASLRKLNSCLFVIRGQPADIFPRLFKEWKVSRLTFEFDSEPFGKERDAAIKKLACE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
G+EV TLY LD + G+ P Y F+ V ++E D P RG
Sbjct: 120 AGVEVIVKISHTLYDLDRIIELNGGQSPLTYKRFQTLV------SSMEPPDPPLASPDRG 173
Query: 305 DV------------EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
+ + +P L +LG VW GGE+EAL+R+++
Sbjct: 174 MMGKCVTPISENHRDKYGVPLLEELGFDTEGLAPAVW----------PGGESEALKRMER 223
Query: 353 F------AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
A + + PK N S G +SP+L GCLS R + S
Sbjct: 224 HLGPDSTAWQENFERPKMNASPLMASPLG------LSPYLRFGCLSCRLFY------CNS 271
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+S+ K + S L ++LWR+FF
Sbjct: 272 LSSTKKVKKNMNPSIS-----LYDKILWREFF 298
>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
Length = 474
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 142/328 (43%), Gaps = 58/328 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP SG D P R +++I +
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDP----AILSG-DDIAPVRVAYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+++ Q GS L++ P L +LA A+GA AVY +++V + + +E ++ +
Sbjct: 61 CLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLKGLP 301
GI+V+ FW L H + F + P KV RK I E D LK
Sbjct: 121 GIKVETFWDQVL-HSPEAIFTGSKEPY-------KVYTPYWRKWIQQPKPEPCDTLK--- 169
Query: 302 SRGDVEPGD----------IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
SRG E + +P+ DLG S ++ GET A RL+
Sbjct: 170 SRGLTEAQEKAAREAGAIALPTAKDLGFIWSEPF------------ILEPGETAASDRLQ 217
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
F + +G N +I G + +SP L G + R+++ + ++ I A +
Sbjct: 218 LFCDRAIYEYDQGR---NFPAIDGTSL---LSPALRFGAIGIRTLWQKTQE----IMALT 267
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFR 439
+ ++ W E+ WR+F++
Sbjct: 268 RSDEARDHI----QTWQQ-EIAWREFYQ 290
>gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
Length = 472
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 142/313 (45%), Gaps = 42/313 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR+ D+ +L A V+PV+ D S +G +R L E +
Sbjct: 8 TLLWFRRDLRLSDHPALTQAAARG-PVIPVFIHD-----DSVAGLGAAPKWR---LGEGL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ R L RG+ L++R G VL L GA AVY R D ++ + +++AA+ D
Sbjct: 59 AVFRDALAERGARLILRRGPAREVLERLIDETGATAVYWTRAYDPDAIERDSRVKAALAD 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G E F G ++ ++ + G+M Y + VK E+ + + A D PS+
Sbjct: 119 RGTEACSFPGHLIFEPWEVETQQGKMYQVYSPYWRAVKDREVDRPLRAPDL--SAPSKWP 176
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
D +L D L A M++ G A GE A RL F+A+ + + K
Sbjct: 177 ----DSEALEDWHL--GAGMNR---GAAIVARHCTPGEGAAQSRLGAFSAQ-RLEDYKER 226
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES-GSSGAG 424
+D + + + +S +L +G +SPR ++ AA + GE+ G SGA
Sbjct: 227 RD-----MPAEDATSDMSQYLTLGEISPRQLW----------HAALR---GEAEGKSGAE 268
Query: 425 SNWLMFELLWRDF 437
E++WR+F
Sbjct: 269 H--FRKEVVWREF 279
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 139/324 (42%), Gaps = 50/324 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A ++ V+ V+C DP + D P R +++I +
Sbjct: 6 LFWHRRDLRISDNVGLAVARQQTQKVVGVFCLDPNILER-----DDVAPARVTYMIGCLE 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ GS+L++ +P T + +LA+++ A AV+ + +V + + I AA+K++
Sbjct: 61 SLQQRYAEVGSELLILFNEPTTAIPKLAESLNAKAVFWNWDVEPYAKERDRTILAALKEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE----KVKGV---EIRKTIEALDQLKG 299
GI + FW L+ +++ G+ T Y F + K K ++ I D K
Sbjct: 121 GIATQNFWDQLLHSPEEIRSGSGQPYTIYTPFWKNWISKAKSTPAPALQNAIRLTDTEKE 180
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA----A 355
+ V ++P+ LG +W+ + GE A +L F
Sbjct: 181 AARQAGVV--ELPTASYLGF--------IWNNNL----VISPGEAAAQAKLATFCDRTID 226
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+YQ Q DG + ++S L G + R+++D + A+ + +
Sbjct: 227 QYQEQRNFPAVDG----------TSQLSAALKFGAIGIRTVWDAI---------ATLYQN 267
Query: 416 GESGSSGAGSNWLMFELLWRDFFR 439
+ + W EL WR+F++
Sbjct: 268 SPESAQASIQTWQQ-ELAWREFYQ 290
>gi|423065610|ref|ZP_17054400.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
gi|406713053|gb|EKD08228.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
Length = 474
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/328 (26%), Positives = 142/328 (43%), Gaps = 58/328 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP SG D P R +++I +
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDP----AILSG-DDIAPVRVAYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+++ Q GS L++ P L +LA A+GA AVY +++V + + +E ++ +
Sbjct: 61 CLQRDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLARQRDRSVEESLTEV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLKGLP 301
GI+V+ FW L H + F + P KV RK I E D LK
Sbjct: 121 GIKVETFWDQVL-HSPEAIFTGSKEPY-------KVYTPYWRKWIQQPKPEPCDTLK--- 169
Query: 302 SRGDVEPGD----------IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
SRG E + +P+ DLG S ++ GET A RL+
Sbjct: 170 SRGLTEAQEKAAREAGAIALPTAKDLGFIWSEPF------------ILEPGETAASDRLQ 217
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
F + +G N +I G + +SP L G + R+++ + ++ I A +
Sbjct: 218 LFCDRAIYEYDEGR---NFPAIDGTSL---LSPALRFGAIGIRTLWQKTQE----IMALT 267
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFR 439
+ ++ W E+ WR+F++
Sbjct: 268 RSDEARDHI----QTWQQ-EIAWREFYQ 290
>gi|374702505|ref|ZP_09709375.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. S9]
Length = 481
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 142/339 (41%), Gaps = 57/339 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++WFR DLRVHDN +L A + +V V+ P + P + F + ++
Sbjct: 3 QLMWFRTDLRVHDNTALAAAMAQGPTV-AVFLLSPAQWQAHDD-----APCKIDFWLRNL 56
Query: 186 SDLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S L L L+VR + V+ EL + V+ ++E +E ++++
Sbjct: 57 SHLSTELGKLNVPLLVRTAEHWDQAAGVISELCQQFDIGQVHLNQEYGVNESLRDDQVGQ 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALD 295
A+ I ++ HLD L F+ G + T G + + KV + I L
Sbjct: 117 ALDALDIGLR-------RHLDQLFFQPGSVLTKTGTYFQVYSQFRKVCYQRLHDNIPGLI 169
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA- 354
+ +E +P ++ + S + Q+W PA GE EA++RL +F
Sbjct: 170 AKPAAQAALAIEADPVPLQVEPFATPSKQLQQLW----PA------GEDEAMRRLARFVD 219
Query: 355 ---AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
A+YQA+ + G + ++S +LA G +SPR + AA
Sbjct: 220 EPIADYQAERDIPSSPG----------TSQLSAYLAAGVISPRQ----------CLHAAL 259
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
+N GE S A + + ELLWR+F++ I Y K
Sbjct: 260 AFNRGEFDSGNARATTWINELLWREFYKHILVGYPRVSK 298
>gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 483
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 149/327 (45%), Gaps = 61/327 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR+ DN +L A E V+PVY P + G + G +L S+
Sbjct: 3 TLLWFRRDLRLTDNPALARAL-EDGEVIPVYIHAPEEEGDWAPGGASL-----WWLHHSL 56
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L ++L+ARG DLV+R G L L + GA V +R + + I+ ++D
Sbjct: 57 AALGEDLRARGVDLVIRQGASLETLQALIRETGAQQVLWNRLYEPALIARDTGIKQQLRD 116
Query: 246 EGIEVKYFWGSTLYH------LDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLK 298
+GI + F + L+ D P+K+ + F + G+ + + A ++++
Sbjct: 117 QGIRTQSFNAALLFEPWTVAKQDGTPYKV------FTPFWKACLGLGVPVDVTPAPERIQ 170
Query: 299 GLPSRGDVEPGDIPSLLDLGL----SQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF- 353
G P++ + PG+ +L LGL +A +++W + GE AL RL +F
Sbjct: 171 G-PAQ--LPPGE--TLKSLGLLPDIDWAAGFTELW----------QPGEAGALARLAEFM 215
Query: 354 ---AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
A+Y + ++DG S ++SP+L G + PR + A + A
Sbjct: 216 DEAVADYDEMRNRPDRDG----------SSRLSPYLHFGEIGPR-------QAAAACQVA 258
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDF 437
+ G++ G S + E+ WR+F
Sbjct: 259 KDRHGGKAAHQGIDS--FLREIGWREF 283
>gi|428213636|ref|YP_007086780.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
gi|428002017|gb|AFY82860.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
Length = 479
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 28/221 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L TA +S ++ V+C DP G D P R +++ ++
Sbjct: 6 LFWHRRDLRITDNIGLATAFEKSRKLVGVFCLDP----NILKGAD-IAPARVKYMLGCLA 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++N GS L + +P + +LA A+ A VY + ++ ++ + +A+K++
Sbjct: 61 ELQENYAKIGSQLFILFDEPRQAIAQLATALQAQFVYWNLDIEPYSQDRDQAVRSALKEQ 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR---------EKVKGVEIRKTIEALDQL 297
GI V+ FW L+ ++ G T Y F E G+E ++ +Q
Sbjct: 121 GIAVETFWDQLLHFPGEICSNTGNPYTVYTPFWKNWIRQTKAEPAPGLEQAISLTEAEQE 180
Query: 298 KGLPSRGDVEPGDIPSLLDLGLS----------QSAAMSQV 328
+ + G+V +P+L DLGLS +SAA SQ+
Sbjct: 181 RA-KNAGEVA---LPTLKDLGLSWDNPLMLEPGESAARSQL 217
>gi|302130079|ref|ZP_07256069.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
NCPPB 1108]
Length = 482
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 140/330 (42%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K + L++R PE VL L K + + +Y + E +E + ++ ++
Sbjct: 57 ELEKAIGKLNVPLLIREADTWDQAPE-VLSTLCKQLKVEGLYLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
+M+ +G+ HLD L FK G + T G + + + K V + +A+ +
Sbjct: 116 SMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP + + S + +W PA GE EA +R++ FA
Sbjct: 169 HTPEAQQPLSIKSDAIPDQVKGFSTPSKTLRDLW----PA------GEVEASRRIEAFAG 218
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
E Q K +D + ++S +LA G +SPR + AA N
Sbjct: 219 E-QISYYKDERD-----FPARPGTSQLSAYLAAGVISPRQ----------CLHAALASNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|422587424|ref|ZP_16662095.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330873295|gb|EGH07444.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 482
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 140/330 (42%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAALQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L L++R PE VL L K + ++ + E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDQAPE-VLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
AM+ +G+ HLD L FK G + T G + + + K V + EA+ +
Sbjct: 116 AMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP + + S ++ +W PA GE EA +R++ FA
Sbjct: 169 HTPEAQQPLSIKSDAIPDQVKGFSTPSKSLRDLW----PA------GEVEASRRIEAFAD 218
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
E Q K +D + ++S +LA G +SPR + AA N
Sbjct: 219 E-QISYYKDERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALASNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|28279917|gb|AAH44204.1| Cry5 protein, partial [Danio rerio]
Length = 545
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 143/324 (44%), Gaps = 44/324 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN +L A + + P++ DP + K++ + G R FLIE++
Sbjct: 31 TIHWFRKGLRLHDNPALIAALKDCRHIYPLFLLDPW-FPKNT----RIGINRWRFLIEAL 85
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G P VL +L K + + ++++ K+
Sbjct: 86 KDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAKE 145
Query: 246 EGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEAL--DQLKGLP 301
G+EV TLY++D + + G+ P Y + VK + +K I A + ++G+
Sbjct: 146 YGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIPAPTNEDMRGVS 205
Query: 302 ---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE-- 356
S E IP+L DLGL S+ + GGE EAL+RL +
Sbjct: 206 TPLSDDHEEKFGIPTLEDLGLDTSSL----------GPHLFPGGEQEALRRLDEHMERTN 255
Query: 357 --YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ + PK + + S + +SP++ GCLS R + L
Sbjct: 256 WVCKFEKPKTSPNSLIPS------TTVLSPYVRFGCLSARIFWWRLADVYR--------- 300
Query: 415 DGESGSSGAGSNWLMFELLWRDFF 438
G++ S S L +LLWR+FF
Sbjct: 301 -GKTHSDPPVS--LHGQLLWREFF 321
>gi|402548804|ref|ZP_10845657.1| deoxyribodipyrimidine photolyase [SAR86 cluster bacterium SAR86C]
Length = 471
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 142/324 (43%), Gaps = 45/324 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI+WFRNDLR+ DN ++ A + S V ++ Y K + FLIE++
Sbjct: 3 SIIWFRNDLRIDDNPAMRAACDNSTEVYAIFL-----YSKDQLRKHNEANIKLDFLIENL 57
Query: 186 SDLRKNLQARGSDLVVRVG-----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+ L +LQ L++ PE +L + AK I D ++ +++ DE K + ++
Sbjct: 58 NSLSDSLQKLNVPLLIMASSGFDESPEIIL-KTAKEIDVDKIFFNKQFGEDEQKRDREVV 116
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK-VKGVEIRKTIEALD-QLK 298
+ ++ I V+ F +Y + + + F+ K V+ + +E LD + K
Sbjct: 117 SILEASDITVESFNDQIVYEAGSIRTGQDNAYSVFTPFKRKWVENFD----MEFLDIEHK 172
Query: 299 GLP-SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+P ++G + D + MS +W P GE AL RLK F
Sbjct: 173 YIPMAQGSISSNISSFNFDFKIEHKVDMS-IW----PT------GEQAALDRLKNFL--- 218
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
+ + +KD N I G + ++SP+LA+G +S + I K N+ E
Sbjct: 219 ENKASNYSKDRNDPIIDG---TSRMSPYLALGIISSKR----------CILEGLKLNNFE 265
Query: 418 SGSSGAGSNWLMFELLWRDFFRFI 441
S G + E++WR+F+R I
Sbjct: 266 FNSGNNGIIKWIDEIVWREFYRNI 289
>gi|33864755|ref|NP_896314.1| deoxyribodipyrimidine photolyase [Synechococcus sp. WH 8102]
gi|33632278|emb|CAE06734.1| probable deoxyribodipyrimidine photolyase [Synechococcus sp. WH
8102]
Length = 477
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 138/322 (42%), Gaps = 42/322 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A S +V VY DP+ S P R FLIES+
Sbjct: 7 LFWHRRDLRLTDNLGLAAAAAISPAVTGVYVLDPQVISPSEHLL-PMAPARLWFLIESLI 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ + GS L+V G P +L +LA+ I A+AV +R+V + + ++ ++ +
Sbjct: 66 ELQQRWRDAGSRLLVVEGDPVQLLPQLAERIAAEAVVWNRDVEPYARERDRQVAQRLQAD 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G +V W L + L G+ YG F +G K + GL D+
Sbjct: 126 GRKVVVDWDQLLIAPELLKTGGGDPYRVYGPFLRNWRGQVQAKQPVTVPAPAGLV---DL 182
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAA-NSMKGGETEALQRLKKFA--AEYQAQPPK 363
+P +PS L + + HG K + GE A+Q+L F A + +P
Sbjct: 183 DPAAVPSGEPLMARRDS------HGFKGTELCPCRPGEAAAMQQLTSFCDGALFGYEP-- 234
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD------ELKKTATSISAASKWNDGE 417
D N + G ++ +S L++G LSPR + E ++ + A + W
Sbjct: 235 ---DRNFPGVVGTSY---LSAALSVGTLSPRQAWSAAQEAREQARSEEQLHAIAVWEQ-- 286
Query: 418 SGSSGAGSNWLMFELLWRDFFR 439
EL WR+F++
Sbjct: 287 -------------ELCWREFYQ 295
>gi|444245671|gb|AGD94517.1| cryptochrome, partial [Solenopsis invicta]
Length = 573
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 133/326 (40%), Gaps = 44/326 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 23 KHTVHWFRKGLRLHDNPSLKEGLAGASTFRCVFVLDPWFAGSTNVGINKW-----RFLLQ 77
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 78 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALC 137
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-----EIRKTIEALDQL 297
++ GI V TLY LD++ + G+ P Y F+ V G+ + A
Sbjct: 138 EELGISVVQRISHTLYKLDEIIERNSGKPPLTYHQFQNVVAGMGPPESPVPTVTAACIGS 197
Query: 298 KGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P + D + +P+L +LG + + VW GGE+EAL RL++
Sbjct: 198 AYTPLKDDHDDHYGVPTLEELGFDTESLLPPVW----------VGGESEALARLERHLER 247
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASK 412
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 248 KAWVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS- 304
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 305 ---------------LHGQLLWREFF 315
>gi|398860974|ref|ZP_10616615.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM79]
gi|398233993|gb|EJN19889.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM79]
Length = 493
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 144/333 (43%), Gaps = 57/333 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+HDN +L+ A SV VY P+ + P + F + ++
Sbjct: 14 LIWLRSDLRLHDNTALSAAAARGPSV-AVYLLSPQQWLAHDD-----APCKVDFWLRNLG 67
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+LR L A L++R + VL+EL + + AV+ + E E + + +
Sbjct: 68 ELRHALDALNIPLLIRKASRWDEAPKVLLELCQQLKIGAVHVNEEYGIHETRRDAAVAQI 127
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
+K +GI+ + LD L K G + T G + + + + V + +L +L
Sbjct: 128 LKAQGIDFYSY-------LDQLLLKPGTVLTRTGTYFQVFSQFRKVCYERLHASLPRLVT 180
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P+ + + PS ++ + S ++ +W PA GETEA +RL+ F
Sbjct: 181 APAIQAPLGIASDEPPSRVEGFDTPSDSLRALW----PA------GETEARRRLETFTDT 230
Query: 357 ----YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
Y ++ K G + ++S +L G +SPR + AA +
Sbjct: 231 QIDYYHSERDFPAKPG----------TSQLSAYLTAGVISPRQ----------CLHAALQ 270
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
N GE S G+ + ELLWR+F++ I Y
Sbjct: 271 SNQGEFESGKVGAVTWINELLWREFYKHILVGY 303
>gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
Length = 483
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 138/315 (43%), Gaps = 40/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VW R+DLR+ DN +L A + V+P+ D + S G G +L S+
Sbjct: 11 VVWLRDDLRLDDNPALAEAADSGRPVVPLVVLD-----EESDGVRSLGGTHKWWLHHSLQ 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
K+L +G+ L++R GK +V++ ++ GA + +R ++ +EAA+ +
Sbjct: 66 CFGKDLADKGAPLILRRGKASEHVVDIVESTGATTLLMNRRYDQASRAVDDAVEAALGSD 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL---PSR 303
+EV+ F + L+ D + K G Y F + + E R I+ D+L L P
Sbjct: 126 -VEVQRFTANILHDPDKVRTKTGGWYKVYTPFWKNLAEDEPRDPIDPPDKLASLDDQPRS 184
Query: 304 GDVEPGD-IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+E D +P+ D W GG A K GE A +R ++F+ E+ P
Sbjct: 185 DRLEEWDLLPTRPD------------WSGG--IAAFWKVGEAAAHERFEEFSDEWLNDYP 230
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
G D+ + ++SP L G +SP ++ A + + K G++ +
Sbjct: 231 DGRDRPGDDA------TSRMSPHLRWGEISPYRLW----HMAEACANRRKTIPGDALKT- 279
Query: 423 AGSNWLMFELLWRDF 437
EL+WRDF
Sbjct: 280 -----FKKELVWRDF 289
>gi|390355184|ref|XP_785873.3| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 754
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 137/326 (42%), Gaps = 49/326 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN +L + +Y DP G S G + R FL+E +
Sbjct: 21 VHWFRKGLRLHDNPALKEGLKSASGFRCIYILDPWFAGSCSKGVN-----RWRFLLECLE 75
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
DL +L+ S L + G+P VL L K + + ++ I ++
Sbjct: 76 DLDSSLRKLNSRLFLIRGQPADVLPRLFKEWKVTQLSFEEDSEPFGRTRDKAISTLAQEA 135
Query: 247 GIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVK--GVEIR--KTIEALDQLKGLP 301
G++V TLY + L E P Y F++ + G+ I + +EA D ++GL
Sbjct: 136 GVKVISKVSHTLYDPQEILALNNNEPPLTYKRFQDIISLMGIPIYPAEALEAED-VEGLD 194
Query: 302 SRGDVEPGD---IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------KK 352
+ D D IP+L +LG +W GGETEA QRL K
Sbjct: 195 TFIDPNHEDKYGIPTLEELGFDPEDVPPPMW----------IGGETEAKQRLDRHLERKA 244
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A ++ P+ + S G +SP+L GCLSPR+ + +L + + +
Sbjct: 245 WVANFER--PRMSPASLMASPAG------LSPYLRFGCLSPRTFYWKLTELYQKVRKTT- 295
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 296 -NTPLS---------LHGQLLWREFF 311
>gi|255076443|ref|XP_002501896.1| predicted protein [Micromonas sp. RCC299]
gi|226517160|gb|ACO63154.1| predicted protein [Micromonas sp. RCC299]
Length = 469
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 109 GPHRPLDPNNGAAIRR---------------------ASIVWFR-NDLRVHDNESLNTAN 146
PHR L P+ RR A IVW R DLRVHD+ L+ A+
Sbjct: 34 APHRKLSPSRRGDARRSVIASSGSRPVVAASAPTHTGAHIVWIRVGDLRVHDHPGLHAAS 93
Query: 147 --NESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204
SV ++P++ FDP + ++ F + + E+V +LR L+ RG+DLVVRVG
Sbjct: 94 LLPPSVPIVPLFVFDPEEAANTTPAFQR-------LVHEAVRELRVALRDRGADLVVRVG 146
Query: 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263
P T + +AK GA ++ RE+ + + AA + G+E + W + L D
Sbjct: 147 SPATHVERIAKETGASSLSCRRELEWSRMSTHRAALAAARGAGVESIHEWSAPLRECAD 205
>gi|320539319|ref|ZP_08038988.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
symbiotica str. Tucson]
gi|320030444|gb|EFW12454.1| putative deoxyribodipyrimidine photolyase, FAD-binding [Serratia
symbiotica str. Tucson]
Length = 475
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 140/328 (42%), Gaps = 50/328 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A NE VL V+ P+ + + P +A+ + S+
Sbjct: 5 LVWLRNDLRITDNKALHAACNEPDARVLAVFIATPQQWRRHD-----IAPRQAALIHASL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L++ L+ +G L L + ++ +R+ +E + ++++E
Sbjct: 60 KQLQQALEQKGIPLYCHQCDDFAASIDWLTDYCAKQQVTVLFYNRQYELNEWRRDQQVEQ 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + ++F S L + GEM Y FR IR+ E+ ++ LP
Sbjct: 120 RLAGR-VRCQHFDDSLLLPPGSVQTGSGEMYKVYTPFRNAF----IRRLTES--DVRCLP 172
Query: 302 S----RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+ G + D P + + GE ALQRL+ F +
Sbjct: 173 APQPRAGALPIPDAPPAFE-------------YSHADPGEDFPAGEQAALQRLRAFCRQ- 218
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
Q Q +D +I G + +SP+LA+G LSPR F+ L S+ + E
Sbjct: 219 QVQDYLTQRD--LPAIAGTS---SLSPYLAIGTLSPRQCFNRLCAEHPSVL-----EERE 268
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKY 445
SG+ G WL EL+WR+F+R + Y
Sbjct: 269 SGAFG----WLN-ELIWREFYRHLMAAY 291
>gi|428301495|ref|YP_007139801.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
gi|428238039|gb|AFZ03829.1| deoxyribodipyrimidine photo-lyase type I [Calothrix sp. PCC 6303]
Length = 476
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 141/330 (42%), Gaps = 48/330 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L TA + + V+ ++C DP D P R +++I +
Sbjct: 6 LFWHRRDLRIADNTGLATARDRTHRVIGLFCLDPNILNP-----DHVAPVRVTYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ GS L++ G+P V+ LA A+GA AV+ + +V K + + A+K++
Sbjct: 61 ALQQRYAEVGSQLLIVQGEPTQVIPTLATALGAKAVFWNWDVEPYSQKRDHTVIDALKEQ 120
Query: 247 GIEVKYF---WGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS- 302
GI+ Y W L+ D++ T Y F + + + L + GL S
Sbjct: 121 GID--YLAPNWDQLLHTPDEIRTGSNSTYTVYSPFWKNWYSKPKAEPVATLANVAGLTSA 178
Query: 303 -------RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
G +E +PS DLG VW G A GE A RL++F
Sbjct: 179 QMEIARKNGVIE---LPSAKDLGF--------VWDGDLIIA----PGEATAQSRLEEFC- 222
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
Y+A +D N +I G + ++S L G + R ++ + T ++I +
Sbjct: 223 -YRA-INNYQEDRNFPAIDG---TSQLSAALKFGVIGIRHVW---QATLSAIE------N 268
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
S + EL WR+F++ + +
Sbjct: 269 SRSDEARDSIRTYQQELAWREFYQHVMYHF 298
>gi|72160938|ref|YP_288595.1| deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
gi|71914670|gb|AAZ54572.1| Deoxyribodipyrimidine photo-lyase type I [Thermobifida fusca YX]
Length = 419
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 121/270 (44%), Gaps = 43/270 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++V F DLRV D+ +L+ A E+ V+P++ DP S+ R ++L+E++
Sbjct: 4 TVVLFTRDLRVSDHPALHAAVTEADRVVPLFVVDPALVRVSARN-------RIAYLLEAL 56
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
++LR L+ RG +LVVR G V + GA AVY +VS V+ ++ A++
Sbjct: 57 AELRGLLRERGGELVVRQGDTVAETVRIVAEAGAQAVYLSADVSAAAVRRARQLTEAVRA 116
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G V+ F G T+ L G+ + + + + R A ++++ LP
Sbjct: 117 AGAHVRTFPGVTVVPPGALRPAHGDHYQIFTPYLNAWRAAQWRSPRPAPERVR-LPE--G 173
Query: 306 VEPGDIPS--LLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
+ PG +P L+ LG G A +GG A +R++ + AQP
Sbjct: 174 LVPGPLPGAELIRLGT------------GVLAPQREQGGPRTARERIRA----WLAQP-- 215
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSP 393
N DS +G + L GCLSP
Sbjct: 216 -----NQDSRFGCH--------LHFGCLSP 232
>gi|15599855|ref|NP_253349.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
gi|418588036|ref|ZP_13152053.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P1]
gi|418590121|ref|ZP_13154036.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P2]
gi|9950915|gb|AAG08047.1|AE004880_3 deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO1]
gi|375041176|gb|EHS33889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P1]
gi|375051072|gb|EHS43545.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa MPAO1/P2]
Length = 481
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + L +Y P + + P + F + ++
Sbjct: 7 NLIWFRCDLRTTDNSAL-LAAADGRPCLALYLLSPAQWREHDDA-----PCKVDFWLRNL 60
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 61 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 120 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 172
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 222
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 223 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 266
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 267 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 302
>gi|452003519|gb|EMD95976.1| hypothetical protein COCHEDRAFT_1127294 [Cochliobolus
heterostrophus C5]
Length = 682
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 147/316 (46%), Gaps = 54/316 (17%)
Query: 168 SGFDKTGPYRASFLIESVSDLRKNLQAR--GSDLVVRVGK-PETV--LVELAKAIGADAV 222
+G +TGP+RA F+ + V +L+ L GS L +RVGK PE V +++ + V
Sbjct: 98 AGVWRTGPHRAKFIADGVWNLKDKLAGLNCGSGLEMRVGKIPEVVSDILDWYDKDENEGV 157
Query: 223 YAHREVSHDEVKSEEKIEAAMKD----EGIEVKYFWGSTLYHLDD--LPF--KLGEMPTN 274
+ ++ D+ E+ A++K+ G++ K W Y++DD LP+ + ++P
Sbjct: 158 ISGVWITDDDATEEKDDLASLKNLTEQRGVDFK-VWVDEKYYVDDRDLPYYDDISKLPNV 216
Query: 275 YGGFREKVKGVEI-----RKTIEALDQLKGLPSRGDVE--PGDIPSLLDLGL-------- 319
Y +R KG+E R T+ QL LPSR + P IPS L+ GL
Sbjct: 217 YTTYR---KGLEPLRDRPRNTVPTPTQLPPLPSRIPPQKPPFTIPSTLE-GLKDALLTPL 272
Query: 320 ----SQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYG 375
+ + + VW +A+ GGET L R++ K ++G + G
Sbjct: 273 LKDPTYTLKVPPVWPTDAQSAHPFSGGETNGLDRIQHLVRTGAMSSYKATRNG----MLG 328
Query: 376 ANFSCKISPWLAMGCLSPRSM------FDELKKTATSISAASKWNDGESGSSGAGSNWLM 429
+FS KIS +LA G ++ R + F+E + + K GE+ + A +
Sbjct: 329 LDFSTKISAYLAQGHITARQVHWAMFDFEEGRGPGEKVPGYGK---GENEGTAA----VR 381
Query: 430 FELLWRDFFRFITKKY 445
FELLWRD+ R +K+
Sbjct: 382 FELLWRDYMRLCMRKF 397
>gi|424813932|ref|ZP_18239110.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
gi|339757548|gb|EGQ42805.1| deoxyribodipyrimidine photolyase [Candidatus Nanosalina sp.
J07AB43]
Length = 471
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 135/320 (42%), Gaps = 50/320 (15%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
R LR HDN +L A+ E V+P+Y D + ++ G+ R F +S+ +L
Sbjct: 7 IRRSLREHDNTALVKASEEHDEVVPLYVVDDSYFEQAELGYP-----RVKFWHDSLKELE 61
Query: 190 KNL-QARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248
++L + G LVVR G P + + + ADAVY +R+ K ++K+E ++ +
Sbjct: 62 QDLSETDGKQLVVRNGDPAEEIQRVVEETEADAVYHNRDYRPYSKKRDQKVEDEIE---V 118
Query: 249 EVKYFWGSTLYHLDDLPFKLGEMPTNYG--GFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
VK F D + F+ E+ TN G + K + Q S ++
Sbjct: 119 PVKSF-------KDIVMFEKEEILTNSGTPYKVYSYYKKKWFKNDKRRPQKVKDYSTPEL 171
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
E +IPS+ +LG + MS VW GG+ LQR+K+F + K
Sbjct: 172 ESVEIPSVSELGFEKPEDMS-VWEGGR----------ENGLQRMKQFK--------QNIK 212
Query: 367 DGNHDSIYGANFSC-KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
D + Y S K+SP L G +S R +F E ++ E S G
Sbjct: 213 DYDQARDYAWRDSTSKLSPHLKFGTVSIREVFWEAERMK------------EDDSDSEGI 260
Query: 426 NWLMFELLWRDFFRFITKKY 445
EL WRD++ I Y
Sbjct: 261 ETWQEELAWRDYYMQILWNY 280
>gi|444425344|ref|ZP_21220786.1| deoxyribodipyrimidine photolyase [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444241341|gb|ELU52866.1| deoxyribodipyrimidine photolyase [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 398
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 116/275 (42%), Gaps = 43/275 (15%)
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G + FL ES+ L +L A L V P + + +G +Y +E
Sbjct: 3 GSAKRQFLDESLHCLNLSLNAFDQRLQVVDLHPYQAIKHAVEMLGVTHLYCDAFPGSEEQ 62
Query: 234 KSEEKIEAAMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT 290
+ I + I EV+ +L ++DLPF L ++P + FR+K + V +++
Sbjct: 63 DVVDHIRQESEHLTICQQEVR-----SLLTVEDLPFALEDLPDTFTKFRKKAENVSLKEP 117
Query: 291 IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL 350
+ L +P L L L + V KP GGE L+
Sbjct: 118 FATVTALPTIP-------------LGLALPTLRLIRDV----KPCL--FTGGEQAGLEHA 158
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+++ + A K ++G + G ++S K SPWLA GCLSP++++ LK+ A
Sbjct: 159 RRYFSSTLASEYKQTRNG----LDGMDYSTKFSPWLAHGCLSPKTIYAMLKRYERLKGA- 213
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + +++
Sbjct: 214 -----------NESTYWIYFELLWREYFYWYARRH 237
>gi|398914031|ref|ZP_10656755.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM49]
gi|398179240|gb|EJM66856.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM49]
Length = 480
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 140/333 (42%), Gaps = 57/333 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR++DN +L+ A V VY P + + P + F + ++
Sbjct: 3 LIWLRSDLRLNDNTALSAAAARGPCV-AVYLLSPEQWLEHDDA-----PCKVDFWLRNLR 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L L++R TVL+ L + DA+Y + E E + + +
Sbjct: 57 ELSRELGQLNIPLLIRQAPRWDDAPTVLLNLCRQWQVDALYLNEEYGIHESRRDAAVART 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ EGIEV+ + LD L F+ G + T G + + + + V + +L L
Sbjct: 117 LRAEGIEVRRY-------LDQLLFQPGSVLTRSGTYFQVFSQFRKVCYERLHHSLPSLVR 169
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-- 354
P + ++ IPS +D + + +W PA GE +A RL F+
Sbjct: 170 APQKQAPLNIASDAIPSSVDGFATPGDNLRSLW----PA------GEAQARDRLDSFSDA 219
Query: 355 --AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
YQ++ K G + ++S +LA G +S R + AA
Sbjct: 220 QIDHYQSERDFPAKPG----------TSQLSAYLAAGVISARQ----------CLRAALH 259
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
N GE S G+ + ELLWR+F++ I Y
Sbjct: 260 SNQGEFESGNTGAVTWINELLWREFYKHILVGY 292
>gi|66910424|gb|AAH97079.1| Cry4 protein [Danio rerio]
Length = 418
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 127/295 (43%), Gaps = 49/295 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I FR LR+HDN SL A S ++ PVY D R + + G G R FL++S+
Sbjct: 5 TIHLFRKGLRLHDNPSLLGALASSSALYPVYVLD-RVFLQ---GAMHMGALRWRFLLQSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL LQA GS L V G +L EL G + EV + ++ I+ ++
Sbjct: 61 EDLDTRLQAIGSRLFVLCGSTANILRELVAQWGITQISYDTEVEPYYTRMDKDIQTVAQE 120
Query: 246 EGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGV---EIRKTIEALDQLKGLP 301
G++ TLY + + G P Y F + + E +++ +
Sbjct: 121 NGLQTYTCVSHTLYDVKRIVKANGGSPPLTYKKFLHVLSVLGEPEKPARDVSIEDFQRCV 180
Query: 302 SRGDVE-PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
+ DV+ +PSL LGL A + +W GGE+ ALQRL+K +Q+Q
Sbjct: 181 TPVDVDRVYAVPSLAHLGLQVEAEV--LW----------PGGESHALQRLEK---HFQSQ 225
Query: 361 PPKGNKDGNHDSIYGANFS-------------CKISPWLAMGCLSPRSMFDELKK 402
+ ANFS +SP+L++GCLS R+ + + +
Sbjct: 226 G------------WVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHKYTR 268
>gi|242092996|ref|XP_002436988.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
gi|241915211|gb|EER88355.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
Length = 654
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 133/285 (46%), Gaps = 41/285 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
++VWFR DLR+HDN +L A E SVLP++ + P DY ++ P R S +L +
Sbjct: 7 TVVWFRRDLRIHDNPALAAAAKEG-SVLPLFIWCPADY-------EQYYPGRCSRWWLKQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETV--LVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S++ L K+L+ G LV+ + T+ L+E I A V +R + ++KI+
Sbjct: 59 SLAHLGKSLELLGCPLVLIRAEDSTLATLLECVHCISATRVVYNRLYDPISLVLDDKIKN 118
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV--EIRKTIEALDQLKG 299
+ GI V+ F G LY D+ + G+ T++ + EK V EI + + A +L
Sbjct: 119 ELSAHGISVQSFNGDLLYEPWDVYDENGQAFTSFNKYWEKCMNVPIEISQYL-APTRLVA 177
Query: 300 LPSRGDVEPGDIPSLLDLGL-------SQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
P +V S+ DLGL S +A +S+ W G A +M L++
Sbjct: 178 APGLANVR---CCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENM----------LEE 224
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
F + + K H G + +SP+L G LS R ++
Sbjct: 225 FLSCGLLEYSK------HGMKVGGTTTSLLSPYLHFGELSVRKVY 263
>gi|422016104|ref|ZP_16362694.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
gi|414095551|gb|EKT57213.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
Length = 481
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 45/323 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+VWFRNDLRV DN++L++A ++ VL ++ P + P + +FL +
Sbjct: 7 CHLVWFRNDLRVMDNKALSSACSDPQAKVLALFTATPEQWRAHD-----VSPRQITFLHQ 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETV-----LVELAKAIGADAVYAHREVSHDEVKSEEK 238
++ +LR +L G L+ + P+ + +++ A+ ADA++ + + +E +E
Sbjct: 62 NLIELRDSLAKLGIPLICQT-TPDFLSAAQWVLDFAEQQQADALFFNHQYELNERNRDEW 120
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + V F + L + + GEM Y FR + + T+ +
Sbjct: 121 L--IKQQPSFRVHAFDDALLLPPKSVSNQKGEMYQVYTPFR---RAFVTQLTVTDFRSVP 175
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
SRG + L + + + + H A GE ALQRL+ F E +
Sbjct: 176 APKSRGAI----------LSIEKQQLLFE--HDAVEIAAHFPSGEVAALQRLRLFCRE-R 222
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
AQ + N+D I + + ++SP+LA+G LSPR + L N
Sbjct: 223 AQDYQQNRD-----IPSLDGTSQLSPYLAVGVLSPRQCLNRLLTE----------NPHTF 267
Query: 419 GSSGAGSNWLMFELLWRDFFRFI 441
S +GS + EL+WR+F+ +
Sbjct: 268 DSPDSGSFTWLNELIWREFYHHL 290
>gi|410994568|gb|AFV96168.1| cryptochrome 2 [Talitrus saltator]
Length = 565
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 127/321 (39%), Gaps = 40/321 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ WFR LR+HDN +L A + +Y DP G S+ G +K FL++ +
Sbjct: 54 VHWFRRGLRLHDNPALRDAIVNCETFRCIYILDPWFAGSSNVGVNK-----WRFLLQCLE 108
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
D+ +L+ S L V G+P L +L K + + + I ++
Sbjct: 109 DVDNSLRNLNSRLFVVRGQPANALPQLFKEWNTTVLSFEEDPEPFGRARDASIIGIAQEM 168
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPT-NYGGFREKVKGVEIRKT----IEALDQLKGL- 300
GIEV TLY LD + K G P Y F+ + ++ IEA D
Sbjct: 169 GIEVIVRTSHTLYELDKIIKKKGGKPPLTYKTFQNILAMMDPPPPPVAPIEASDLKHAYT 228
Query: 301 PSRGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
P + D + +P+L LG VW KGGETEAL RLK
Sbjct: 229 PLQHDHDDKYGVPNLEHLGFETEHLPPAVW----------KGGETEALSRLKHHLERKAW 278
Query: 360 QPPKGNKDGNHDSIYGANFSC--KISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
G S+ F+C +SP+L GCLS R + EL T I
Sbjct: 279 VASFGRPKMTPQSL----FACPTGLSPYLRFGCLSARKFYTELNVLYTKIKKVP------ 328
Query: 418 SGSSGAGSNWLMFELLWRDFF 438
+ S G LLWR+FF
Sbjct: 329 APVSLHG------HLLWREFF 343
>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
Length = 361
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 133/318 (41%), Gaps = 47/318 (14%)
Query: 134 LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQ 193
LR+HDN +L + +V VY DP S+ G + R FL++S+ DL +L+
Sbjct: 3 LRLHDNPALRECIQGADTVRCVYILDPWFAASSAVGIN-----RWRFLLQSLEDLDNSLR 57
Query: 194 ARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253
S L V G+P V L K G + + + + I K+ G+EV
Sbjct: 58 KLNSRLFVVRGQPTDVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIIKLAKEAGVEVVIE 117
Query: 254 WGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPSRGDVEPGD- 310
TLY LD + G P Y F+ + +E+ +K + + + + D++
Sbjct: 118 NSHTLYDLDRIIELNGHKPPLTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHD 177
Query: 311 ----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK------FAAEYQAQ 360
+PSL +LG VW +GGETEAL RL K + A Y+
Sbjct: 178 DVYGVPSLEELGFPTDGLAPAVW----------QGGETEALARLDKHLERKAWVANYER- 226
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
P+ N + S G +SP+L GCLS R + L + + + S
Sbjct: 227 -PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV---------KRNS 270
Query: 421 SGAGSNWLMFELLWRDFF 438
+ S L +LLWR+FF
Sbjct: 271 TPPLS--LYGQLLWREFF 286
>gi|408483909|ref|ZP_11190128.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. R81]
Length = 481
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 142/329 (43%), Gaps = 49/329 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR+HDN +L A+ + VY P+ + P + F + ++
Sbjct: 3 LIWLRTDLRLHDNTALAAASQRG-PIAAVYLITPQQWQSHDDA-----PCKVDFWLRNLQ 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
DL K L A L++R + VL +L + + ++V+ + E E + + + A
Sbjct: 57 DLSKTLGALNIPLLIRTAATWDQAPDVLSKLCRELSVESVHVNEEYGIHESRRDAAVSKA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ +G+ + LD L F+ G + T G + + + + V + AL ++
Sbjct: 117 LEADGVTFHRY-------LDQLFFQPGSVLTKTGTYFQVFSQFRKVCYTRLHSALPRMVA 169
Query: 300 LPSRG---DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P ++ +P+ ++ S ++ +W PA GE EA +RL FA +
Sbjct: 170 APKAQAPLKLKSDPVPNTVEGFAPPSDSLRALW----PA------GEDEARRRLDAFA-D 218
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K +D + ++S +LA G +SPR + AA + N G
Sbjct: 219 QQISYYKDERD-----FPAKPGTSQLSAYLAAGVVSPRQ----------CLHAALQTNGG 263
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E S G+ + ELLWR+F++ I Y
Sbjct: 264 EFESGDLGAITWINELLWREFYKHILVGY 292
>gi|421519218|ref|ZP_15965890.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO579]
gi|404346203|gb|EJZ72554.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAO579]
Length = 476
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + L +Y P + + P + F + ++
Sbjct: 2 NLIWFRCDLRTTDNSAL-LAAADGRPCLALYLLSPAQWREHDDA-----PCKVDFWLRNL 55
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 56 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 114
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 115 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 167
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 217
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 218 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 261
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 262 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 297
>gi|428208935|ref|YP_007093288.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
gi|428010856|gb|AFY89419.1| deoxyribodipyrimidine photo-lyase type I [Chroococcidiopsis
thermalis PCC 7203]
Length = 477
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 50/325 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP + D P R +++I +
Sbjct: 6 LFWHRRDLRISDNTGLAAARQRTQKVVGVFCLDPNILER-----DDVAPVRVTYMIGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS-HDEVKSEEKIEAAMKD 245
L++ GS L++ G+P + LA A+ A AV+ + +V + +V+ IE +K+
Sbjct: 61 QLQQRYAQVGSQLLILQGEPREAIPALATALSAKAVFWNWDVEPYSQVRDRTVIE-TLKE 119
Query: 246 EGIEV-KYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+GI+V + W L+ DD+ + T + F +AL ++GL S
Sbjct: 120 KGIQVLEENWDQILHSPDDIFTGSNQPYTVFTPFWRNWSSKPKAAPAQALQDVEGL-SEQ 178
Query: 305 DVEPGD------IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA---- 354
+++ + +P+ DLG + W G ++ GET A +RL++F
Sbjct: 179 ELQTAEKVGAIALPTAKDLGFN--------WENGL----VIEPGETPARERLEQFCHRAI 226
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
EY+ Q DG + ++S L G + R ++ A ++ A
Sbjct: 227 EEYKEQRNFPAYDG----------TSQLSAALKFGAIGIRRVW------AATVEAMENTR 270
Query: 415 DGESGSSGAGSNWLMFELLWRDFFR 439
E+ +S W EL WR+F++
Sbjct: 271 SDEAQTSIRA--WQQ-ELAWREFYQ 292
>gi|172037341|ref|YP_001803842.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|354553774|ref|ZP_08973080.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
gi|171698795|gb|ACB51776.1| DNA photolyase [Cyanothece sp. ATCC 51142]
gi|353554491|gb|EHC23881.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. ATCC 51472]
Length = 476
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 25/220 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I W R DLR+ DN L+ A +S ++ ++C DP + D P R ++++ +
Sbjct: 6 IFWHRRDLRLSDNIGLSKAYQKSSKLVGLFCLDPNILQR-----DDIAPARVNYMLGCLR 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L+++ Q G L++ G+P ++ E+AK++ + V + +V + +++++ A++++
Sbjct: 61 NLQESYQKLGGQLLIFQGQPTKIIPEVAKSLKVNCVIWNNDVEPYSKERDKQVKEALQEK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTN-YGGF-REKVK--GVEIRKTIEALDQLK---- 298
GI + +W L+ ++ K P Y F R VK I ++IE LD L
Sbjct: 121 GITSETYWDQLLHAPGEILTKSNNDPYKVYTPFWRSWVKEDKANIAESIEKLDSLSDEEI 180
Query: 299 ---------GLPSRGDVEPG-DIPSLLDLGLSQSAAMSQV 328
LP+ D+ G DIP LL+LG ++AA Q+
Sbjct: 181 NTVKNIGLIDLPTAKDLGYGWDIPLLLELG--ETAAKEQL 218
>gi|374334090|ref|YP_005090777.1| deoxyribodipyrimidine photolyase [Oceanimonas sp. GK1]
gi|372983777|gb|AEY00027.1| deoxyribodipyrimidine photolyase [Oceanimonas sp. GK1]
Length = 449
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 131/322 (40%), Gaps = 36/322 (11%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W RNDLR+ D+ + V+ ++G + G +A++L ++++
Sbjct: 3 LLWLRNDLRLDDHAGWQALADYQGKTAAVFILPAHWLTTDAAGLHRLGAAKAAYLQQALA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK-IEAAMKD 245
DL L L + G+P +L+ + + V+H EE A + D
Sbjct: 63 DLSARLAP--FPLTLLQGEPVELLLAWHR------LQPFELVTHAAQAPEEAGWLARLCD 114
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G++V L+ + + + P ++ GFR+KV+ V P
Sbjct: 115 AGVKVHTVEAQPLFEPEQIAPLFKKFPASFTGFRKKVEKV------------PAWPVPAP 162
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
D+ L + + + A + +GGET A L+ + E +A +
Sbjct: 163 QAAADVSRLRAAACPLTTGIDWPVTPAELAHPAWQGGETHARAWLQHYLFEQRA---LAH 219
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
+ + + G FS +S LA GCLSPR ++ ++ + +W E S
Sbjct: 220 YKASRNDLAGRYFSSHLSAALAWGCLSPREVWQQI------LEYEQQWGSDEH------S 267
Query: 426 NWLMFELLWRDFFRFITKKYSS 447
WL FELLWR++F + + + S
Sbjct: 268 YWLRFELLWREYFHWSLRVHGS 289
>gi|392549764|ref|ZP_10296901.1| Deoxyribodipyrimidine photolyase [Pseudoalteromonas spongiae
UST010723-006]
Length = 452
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 141/325 (43%), Gaps = 35/325 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WF +DLR+ DN +L A S + VY DP ++ G ++ F++ ++
Sbjct: 4 TLYWFTHDLRLSDNSALEYALKNSEQIAFVYVLDPSTKIANNYHSQLLGDHQTRFILNAL 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L LQA G L+V G ++ + E + + + +V E + ++++
Sbjct: 64 QELADELQALGHQLIVLEGAAQSEVSEFIREHDINQLVVAEQVGEFEKRKLAELQSTHSK 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ FW TL+ + L M ++ FR KV+ + T+ A L+ P +
Sbjct: 124 --VNFTQFWQHTLFSQHQIA-TLDCMSGSFSKFRNKVEKKPL--TVSAPTSLES-PLTPE 177
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM------KGGETEALQRLKKFAAEYQA 359
P I + L A + + G N M G+ + L AA+
Sbjct: 178 HWPKAIKVDNNCAL---LAWFERYGGAYTMPNEMPFFAGEHAGKYHLVSYLNSGAAK-TY 233
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
+ + DG H+ S K SP+LA+G LSPR ++ + + S DG +
Sbjct: 234 KETRNELDGWHN-------STKFSPYLAIGNLSPRQIWHAVLQYEQS--------DGANE 278
Query: 420 SSGAGSNWLMFELLWRDFFRFITKK 444
S + W+ FELLWR++F++++ +
Sbjct: 279 S----TYWIKFELLWREYFQWLSVR 299
>gi|407477769|ref|YP_006791646.1| Cryptochrome DASH [Exiguobacterium antarcticum B7]
gi|407061848|gb|AFS71038.1| Cryptochrome DASH [Exiguobacterium antarcticum B7]
Length = 400
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 131/321 (40%), Gaps = 59/321 (18%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A IVW+R DLRV D+E+L+ A +E +V ++ + G +F E+
Sbjct: 2 AGIVWYRKDLRVDDHEALSRACSEQQTVRALFI---------QREIETRGHQHVTFERET 52
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEAAM 243
+ LR +L G +L + G + +L++ I D +Y HR E + E+++
Sbjct: 53 LQSLRDHLGQLGIELTILQGG---AMEQLSRFIEPEDVLYFHRMTGFYEERLEQEVLRQF 109
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
E + TL+ +D+ E+ + FR++V+ S
Sbjct: 110 TACMYETQ-----TLHLREDIG--SDELKRVFTAFRKRVE-----------------ESG 145
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
EP D P + Q A H P A GGE RL EY +P
Sbjct: 146 RFAEPIDAPGEVRYVEPQEARAMDHPHTSFPFA----GGEAAGRARL----TEYLERPVF 197
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
K+ + + + S K+S WLA G LSPR + EL++T A
Sbjct: 198 TYKETRNG--FDRDDSSKLSAWLANGSLSPRRVMAELQRTERLHGA------------NE 243
Query: 424 GSNWLMFELLWRDFFRFITKK 444
+ WL FELLWRDFF ++
Sbjct: 244 STYWLYFELLWRDFFHLTMRE 264
>gi|380017772|ref|XP_003692819.1| PREDICTED: cryptochrome-1-like [Apis florea]
Length = 571
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 132/326 (40%), Gaps = 44/326 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNIGINK-----WRFLLQ 75
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 76 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALC 135
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIEALDQLKGL-- 300
K+ GI V TLY LD++ + G+ P Y F+ V ++ + +
Sbjct: 136 KELGISVVQKVSHTLYKLDEIIERNGDKSPLTYHQFQTVVASMDPPEPPVPTVTSACVGS 195
Query: 301 ---PSRGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P + D + +P+L +LG + VW GGE+EAL RL++
Sbjct: 196 AYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVW----------VGGESEALARLERHLER 245
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASK 412
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 246 KAWVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS- 302
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 303 ---------------LHGQLLWREFF 313
>gi|411117034|ref|ZP_11389521.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
gi|410713137|gb|EKQ70638.1| deoxyribodipyrimidine photolyase [Oscillatoriales cyanobacterium
JSC-12]
Length = 547
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 75/130 (57%), Gaps = 9/130 (6%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR DLR+ D+ + A +V+PV+ FD ++ +T P R FL++++
Sbjct: 4 TIVWFRRDLRIADHAPIYRAALRG-AVIPVFVFD-----RALLHHPETAPARVEFLLQAL 57
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH--REVSHDEVKSEEKIEAAM 243
L + L+ RG L++R G P TVL L + AD +YAH E + V+ + ++ A+
Sbjct: 58 MSLDQELRDRGGRLIIRSGDPVTVLPNLIRETEADGIYAHIDFERIYGRVR-DARLNQAL 116
Query: 244 KDEGIEVKYF 253
++G+++++F
Sbjct: 117 AEQGLKIRWF 126
>gi|383771224|ref|YP_005450289.1| DNA photolyase [Bradyrhizobium sp. S23321]
gi|381359347|dbj|BAL76177.1| DNA photolyase [Bradyrhizobium sp. S23321]
Length = 479
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 135/319 (42%), Gaps = 34/319 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR+DLR+ D+ +L+ A V+ +Y D + G +L +S+
Sbjct: 8 IVWFRDDLRLSDHPALHAAAKTGAPVICLYVLD-------DAAGRAPGGAARWWLAQSLR 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L +++ RG L++R G V+ E+A+AIGA AVY + E+ +EAA+
Sbjct: 61 ALGADIRRRGGSLILRKGPAAGVIPEVARAIGATAVYWNEVAQAPHQSVEKALEAALAKL 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI+ F G L + K G + F R+ + D K LP+ ++
Sbjct: 121 GIDSHIFPGDLLVAPSAIRNKEGRGLRVFTPF--------WRRVLALGDPPKPLPAPKEL 172
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
G + L + W GG S + GE A RL+ F ++ A G++
Sbjct: 173 RAGPKITSDALESWKLEPSKPDWAGG--LRESWEPGEASARTRLRDF-LKHTAHSYAGDR 229
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
D + +SP L G LSPR ++ A+++ E+ + G G
Sbjct: 230 DRPDR-----KGTSSLSPHLRFGELSPRQVWH-----------AARFAAAENPAIGPGVE 273
Query: 427 WLMFELLWRDFFRFITKKY 445
+ EL WR+F R + +
Sbjct: 274 KFLSELGWREFCRHLLHDH 292
>gi|409989683|ref|ZP_11273203.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
gi|409939453|gb|EKN80597.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
Length = 474
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 144/325 (44%), Gaps = 52/325 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP + SG D P R ++++ +
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDP----EILSG-DDIAPVRVAYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+++ Q GS L++ P L +LA A+GA A+Y +R+V + + +E ++ +
Sbjct: 61 CLQEDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLK--G 299
GI+V+ FW L H + F + P KV RK I E +LK G
Sbjct: 121 GIKVETFWDQVL-HSPEAIFTGSKEPY-------KVYTPYWRKWIQQPKPEPCQRLKSTG 172
Query: 300 LP---SRGDVEPGDI--PSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
L + +E G I P+ DLG S ++ GET A RL+ F
Sbjct: 173 LTEAQEKAALEAGAIALPTAKDLGFIWSEPF------------ILEPGETAASDRLEIFC 220
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ +G N +I G + +SP L G + R+++ + ++ I A ++ +
Sbjct: 221 DRAIYEYDEGR---NFPAIDGTSV---LSPALRFGAIGIRTLWQKTQE----IMALTRSD 270
Query: 415 DGESGSSGAGSNWLMFELLWRDFFR 439
+ W EL WR+F++
Sbjct: 271 EARHHI----QTWQQ-ELAWREFYQ 290
>gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max]
Length = 642
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 130/280 (46%), Gaps = 35/280 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALTAAAKEG-SVLPVYVWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K V++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHVQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG-----GETEALQRLKKFAAEY 357
G +E SL +LGL + KP +N++ G G A + L++F +
Sbjct: 177 EGKIEEC---SLEELGLENESE--------KP-SNALLGRAWSPGWRNADRALREFVELH 224
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
K G + +SP+L G LS R +F
Sbjct: 225 LLHYSKKRLK------VGGESTSLLSPYLHFGELSARKVF 258
>gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera]
gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera]
Length = 570
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 132/326 (40%), Gaps = 44/326 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL++
Sbjct: 21 KHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNIGINK-----WRFLLQ 75
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 76 CLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDPEPFGRVRDHNISALC 135
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIEALDQLKGL-- 300
K+ GI V TLY LD++ + G+ P Y F+ V ++ + +
Sbjct: 136 KELGISVVQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGS 195
Query: 301 ---PSRGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P + D + +P+L +LG + VW GGE+EAL RL++
Sbjct: 196 AYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVW----------VGGESEALARLERHLER 245
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL----KKTATSISAASK 412
G S+ + +SP+L GCLS R + +L KK ++ S
Sbjct: 246 KAWVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLS- 302
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 303 ---------------LHGQLLWREFF 313
>gi|448381750|ref|ZP_21561726.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
gi|445662831|gb|ELZ15594.1| deoxyribodipyrimidine photolyase [Haloterrigena thermotolerans DSM
11522]
Length = 468
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 130/316 (41%), Gaps = 38/316 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ W R DLR DN L A + SV+P++ DP + D P R + L+E++
Sbjct: 2 NVFWHRRDLRPDDNRGLARAAAANESVVPLFVLDP-------TVLDHASPVRVATLLEAL 54
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DLR + RGSDL+V G+ V+ E+A A V + + S + + + AA++D
Sbjct: 55 EDLRSQYRERGSDLLVVRGEASAVVPEVAAEYDATTVVWNEDYSGLARERDRAVRAALED 114
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
EGI + + + + G+ + + F +K + + R+ D P G
Sbjct: 115 EGIAAESVHDAIHHEPGSITPNQGDHYSVFSYFWKKWRDRDKREPAAEPDADDLAPVSG- 173
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
EP IP+L DLG + A P + +++ A++ + P
Sbjct: 174 -EP--IPTLSDLGFDEPEATP-------PTVTTAAA---------REWVADFCSGPIYDY 214
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
D + + ++SP L G + PR ++ ++ A ES
Sbjct: 215 ADRR--DYPAESGTSRLSPQLKWGTIGPRELYVATERAAER---------AESDDDRESV 263
Query: 426 NWLMFELLWRDFFRFI 441
+L WR+F+ +
Sbjct: 264 REFQRQLAWREFYAHV 279
>gi|28868336|ref|NP_790955.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|422659492|ref|ZP_16721917.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|28851573|gb|AAO54650.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331018110|gb|EGH98166.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 482
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 139/330 (42%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAAMQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L L++R PE VL L K + ++ + E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDQAPE-VLATLCKQFKVEGLHLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
+M+ +G+ HLD L FK G + T G + + + K V + +A+ +
Sbjct: 116 SMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHQAMPRTV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP + + S + +W PA GE EA +R++ FA
Sbjct: 169 HTPEAQQPLSIKSDAIPDQVKGFSTPSKTLRDLW----PA------GEVEASRRIEAFAG 218
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
E Q K +D + ++S +LA G +SPR + AA N
Sbjct: 219 E-QISYYKDERD-----FPARPGTSQLSAYLAAGVISPRQ----------CLHAALASNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|86605487|ref|YP_474250.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
gi|86554029|gb|ABC98987.1| deoxyribodipyrimidine photolyase [Synechococcus sp. JA-3-3Ab]
Length = 479
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 20/199 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR+ DN +L+ A S V+PV+ FDP+ ++ P R +FL++++
Sbjct: 6 LLWHRRDLRLGDNTALHGAAQRSPQVVPVFVFDPQLLQRAD-----MAPARVAFLLQALQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ G L+ R G P L +LA +GA AV+ + ++ + E ++ A++ +
Sbjct: 61 ELQERYAQMGIPLLWRRGDPAVELRQLAAELGAQAVFWNEDLDPWARQQESRVRASLAEA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV------EIRKTIEALDQLKGL 300
GI + L+ ++ + GE + + F + + I K+++A+ LK
Sbjct: 121 GIPSFSYQDMLLHGPGEVLTQAGEPYSVFTPFWRRWSSLPKPDPFPIPKSLQAVSSLKAQ 180
Query: 301 PSRGDVEPGDIPSLLDLGL 319
P +PSL DLG
Sbjct: 181 P---------LPSLADLGF 190
>gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
Length = 514
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 136/336 (40%), Gaps = 60/336 (17%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLP-------VYCFDPRDYGKSSSGFDKTGPY 176
+++I WFR LR+HDN SL A + +L VY DP G S+ G +
Sbjct: 2 KSTIHWFRKGLRLHDNPSLRDA----LQMLQPGDVWRCVYVLDPWFAGSSNVGVN----- 52
Query: 177 RASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
R FL++ + DL +L+ S L V G+P V L K + + + +
Sbjct: 53 RWRFLLQCLEDLDASLRKLNSRLYVIRGQPTDVFPRLFKEWKVSCLSFEEDSEPFGRERD 112
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVE------IRK 289
+ K+ G++V TLY L D + G+ P Y F+ + ++
Sbjct: 113 MAVMKLAKEAGVKVILRTSHTLYKLQDIIDVNGGQPPLTYKRFQAILSKMDPPDQPVDSI 172
Query: 290 TIEALDQLKGLPSRGDV-EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQ 348
T +D L P R D E +PSL +LG VW GGETEAL
Sbjct: 173 TASTVDNLTT-PIRDDHDEKFGVPSLEELGFDTDNLNPVVW----------PGGETEALT 221
Query: 349 RL------KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 402
RL K + A ++ PK S G +SP+L GCLSPR + +L +
Sbjct: 222 RLERHLERKAWVASFER--PKMTASSLLASPTG------LSPYLRFGCLSPRLFYKKLTE 273
Query: 403 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ + N G +LLWR+FF
Sbjct: 274 LYKKVKRS---NHPPLSLYG--------QLLWREFF 298
>gi|416855512|ref|ZP_11911543.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 138244]
gi|334842869|gb|EGM21468.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 138244]
gi|453042710|gb|EME90449.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
PA21_ST175]
Length = 481
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 60
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 61 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGVSAVHVNQEYGVNEERRDQAVG 119
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 120 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 172
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 222
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 223 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 266
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 267 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 302
>gi|424944563|ref|ZP_18360326.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa NCMG1179]
gi|346061009|dbj|GAA20892.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa NCMG1179]
Length = 476
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 2 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWQEHDDA-----PCKVDFWLRNL 55
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 56 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 114
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 115 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 167
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 217
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 218 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 261
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 262 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 297
>gi|218893757|ref|YP_002442626.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
gi|218773985|emb|CAW29800.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa LESB58]
Length = 481
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 60
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 61 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 120 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 172
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 222
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 223 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 266
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 267 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 302
>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 482
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 136/315 (43%), Gaps = 39/315 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFD---PRDYGKSSSGFDKTGPYRASFLIE 183
++WFRNDLR+ D+ +L A + +LP+Y D P+ + K G +L +
Sbjct: 7 VLWFRNDLRLGDHAALVAAVHTGAPILPLYILDDASPKQW--------KMGGASHWWLDK 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L +L +RG LV+R G ET L+ + + GA AVY R V E++++ +
Sbjct: 59 SLAALAGDLASRGGPLVLRRGDSETELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTKL 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIEALDQLKGLPS 302
D + + F G L +D+ G Y F R +K + K++ A +++ L
Sbjct: 119 DDANVACRRFGGRLLREPEDMRTSNGGFYKVYTPFSRAIMKDLVPAKSVRAPERIATLEK 178
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+ E L D L W G AA + GE A +RL F +
Sbjct: 179 QPKSE-----RLRDWALHPQ---KPDWSKGFAAA--WQPGEAGARKRLSDFV---RTALK 225
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+D N + G + ++SP LA G +SP + + G++ S
Sbjct: 226 SYARDRNCPATPG---TSRLSPHLAFGEISPAACWHAAAHAG-----------GKTNGSD 271
Query: 423 AGSNWLMFELLWRDF 437
+ + ELLWR+F
Sbjct: 272 NAAETFLKELLWREF 286
>gi|421170445|ref|ZP_15628397.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
700888]
gi|404523383|gb|EKA33807.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
700888]
Length = 481
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 7 NLVWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 60
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 61 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 120 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 172
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 222
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 223 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 266
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 267 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 302
>gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 437
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 135/330 (40%), Gaps = 60/330 (18%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R I WF+ DLR+ DN +L A S V+PV+ F P + S +TG FLIE
Sbjct: 3 RRVIFWFKRDLRIDDNRALFEACQNSFEVIPVFIFIPSILERFKSYDRRTG-----FLIE 57
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ L K ++ +G L +P+ V + L + G A++ +R S + EE ++
Sbjct: 58 SLKHLSKEIEKKGGRLYCFHDEPQRVFLTLIRKYGIQAIFTNRAFSWSGEEVEETVKKLC 117
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+EG++ F + L +D +P++ Y + + ++ E+ P R
Sbjct: 118 LNEGVDFVTFNDNFLAEIDKIPYR-KIYSKFYRYWEQNLRLTEV-----------SSPER 165
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF-AAEYQAQPP 362
+ + P + + S + VW KP ++RLK+F Y+
Sbjct: 166 INTPKLNEPEIDIVASEISHEKNIVW---KPDF---------GIRRLKEFDFNRYEELRD 213
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+ + DG + K+SP++ G +S R ++ S
Sbjct: 214 RLDIDG----------TSKLSPYIRFGLISLRKIY-------------------RVASEA 244
Query: 423 AGSNW-LMFELLWRDFFRFITKKYSSAKKV 451
AG + + EL WR+F+ I + K +
Sbjct: 245 AGQDCQFIKELAWREFWYHIKLNFPQFKNL 274
>gi|388470348|ref|ZP_10144557.1| deoxyribodipyrimidine photolyase [Pseudomonas synxantha BG33R]
gi|388007045|gb|EIK68311.1| deoxyribodipyrimidine photolyase [Pseudomonas synxantha BG33R]
Length = 480
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 137/329 (41%), Gaps = 49/329 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR+HDN +L A V +Y P + P + F + ++
Sbjct: 3 LIWLRTDLRLHDNTALAAACQRG-PVAAIYLITPEQWLAHDDA-----PCKIDFWLRNLQ 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L + L L++R + L EL + + ++V+ + E E + + +
Sbjct: 57 HLSQALGELNIPLLIRYAATWDQAPAALSELCRELSVESVHVNEEYGIHESQRDAAVAQT 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ +GI + LD L F+ G + T G + + + + V + AL +
Sbjct: 117 LQTQGITFHSY-------LDQLFFQPGSVLTKTGTYFQVFSQFRKVCYNRLHSALPRQVA 169
Query: 300 LP---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356
P +R DV+ +P+ +D S S + +W PA GE EA +RL F E
Sbjct: 170 TPKTQARLDVKSDPVPTTVDGFESPSETLRALW----PA------GEDEARRRLDAFTDE 219
Query: 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDG 416
Q K +D + ++S +LA G +SPR + AA + N G
Sbjct: 220 -QISYYKDERD-----FPAKPGTSQLSAYLAAGVVSPRQ----------CLHAALQTNQG 263
Query: 417 ESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E S G+ + ELLWR+F++ I Y
Sbjct: 264 EFESGDIGAITWINELLWREFYKHILVGY 292
>gi|392986329|ref|YP_006484916.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa DK2]
gi|419754592|ref|ZP_14280952.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
PADK2_CF510]
gi|384399005|gb|EIE45408.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
PADK2_CF510]
gi|392321834|gb|AFM67214.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa DK2]
Length = 476
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 2 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 55
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 56 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 114
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 115 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 167
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 217
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 218 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 261
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 262 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 297
>gi|107099673|ref|ZP_01363591.1| hypothetical protein PaerPA_01000691 [Pseudomonas aeruginosa PACS2]
gi|254244448|ref|ZP_04937770.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
gi|420141848|ref|ZP_14649487.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CIG1]
gi|421156086|ref|ZP_15615540.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
14886]
gi|421163219|ref|ZP_15621946.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
25324]
gi|421182722|ref|ZP_15640194.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa E2]
gi|126197826|gb|EAZ61889.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 2192]
gi|403245405|gb|EJY59222.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CIG1]
gi|404519465|gb|EKA30217.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
14886]
gi|404529467|gb|EKA39503.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa ATCC
25324]
gi|404541468|gb|EKA50825.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa E2]
Length = 481
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 60
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 61 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 120 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 172
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 222
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 223 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 266
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 267 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 302
>gi|451985074|ref|ZP_21933305.1| Deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 18A]
gi|451757248|emb|CCQ85828.1| Deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 18A]
Length = 476
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 2 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 55
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 56 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 114
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 115 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 167
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 217
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 218 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 261
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 262 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 297
>gi|330920090|ref|XP_003298886.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1]
gi|311327731|gb|EFQ93028.1| hypothetical protein PTT_09721 [Pyrenophora teres f. teres 0-1]
Length = 678
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 159/379 (41%), Gaps = 63/379 (16%)
Query: 120 AAIRRASIVWFRNDL---RVHDNESLNTANNES--VSVLPVYCFD--------------P 160
AA++ A +RN R H ++SL + + + +LPVY + P
Sbjct: 28 AALQTARQTSWRNSANSDRRHRDDSLTSEHGGASFTHLLPVYVWSANQIEVSGFLPASTP 87
Query: 161 RDYGKSSSGFD---KTGPYRASFLIESVSDLRKNLQAR--GSDLVVRVGKPETVLVELAK 215
Y ++ S +TGP+R F+ + V DL+ L GS L RVG+ V+ ++
Sbjct: 88 SPYPEARSAVAQVWRTGPHRVQFIADGVWDLKNKLAGLDCGSGLEQRVGRLTEVVSDILN 147
Query: 216 AIGAD-------AVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--LPF 266
D V+ + + +E + E ++ K GI+ K W +++DD LP+
Sbjct: 148 WYSKDENEGVISGVWMTEDDATEEKQEEAELAEITKQHGIDFK-VWKDEKFYIDDRDLPY 206
Query: 267 -KLGEMPTNYGGFREKVKGVEIR----KTIEALDQLKGLPSRGDVEPGDIPS-LLDLG-- 318
+ ++P Y FR+ + + R + EP IPS L DL
Sbjct: 207 DNIADLPNVYTTFRKAFEPLRDRPRETLPTPSQLPPLPPSIPPQKEPFSIPSSLADLKKA 266
Query: 319 ----LSQSAA----MSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNH 370
L + A M W +A+ GGE+ LQR+ A K ++G
Sbjct: 267 LLSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGESAGLQRIAHLVASGAMGSYKQTRNG-- 324
Query: 371 DSIYGANFSCKISPWLAMGCLSPR----SMFDELKKTATSISAASKWNDGESGSSGAGSN 426
+ G +FS K+S +LA G ++ R +MFD ++ + GE+ + A
Sbjct: 325 --MLGLDFSTKLSAYLAQGHITARQVHWAMFD-FEEGRGPGEKRHAYGQGENEGTAA--- 378
Query: 427 WLMFELLWRDFFRFITKKY 445
+ FELLWRD+ R +K+
Sbjct: 379 -VRFELLWRDYMRLCMRKF 396
>gi|189200290|ref|XP_001936482.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187983581|gb|EDU49069.1| cryptochrome DASH [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 675
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 163/401 (40%), Gaps = 75/401 (18%)
Query: 97 LSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNES--VSVLP 154
LS NP+ +L R N A N R H ++SL + + + +LP
Sbjct: 19 LSDNPIFHTAALQTARQTSWRNSA-----------NSDRRHRDDSLTSEHGGASFTHLLP 67
Query: 155 VYCFD--------------PRDYGKSSSGFDK---TGPYRASFLIESVSDLRKNLQAR-- 195
VY + P Y ++ S K TGP+R F+ + V DL+ L
Sbjct: 68 VYVWSANQIEVSGFLPASTPSPYPEARSAVAKVWRTGPHRVQFIADGVWDLKNKLADLDC 127
Query: 196 GSDLVVRVGKPETVLVELAKAIGAD-------AVYAHREVSHDEVKSEEKIEAAMKDEGI 248
GS L RVGK V+ ++ D V+ + + +E + E ++ K G+
Sbjct: 128 GSGLEQRVGKITEVVSDILDWYAKDENEGEISGVWMTEDDATEEKREEAELAKITKQHGV 187
Query: 249 EVKYFWGSTLYHLDD--LPF-KLGEMPTNYGGFREKVKGVEIR----KTIEALDQLKGLP 301
+ K W +++DD LP+ + ++P Y FR+ + + R +L
Sbjct: 188 DFK-VWKDEKFYIDDRDLPYDNIADLPNVYTTFRKVFEPLRDRPRETLPTPSLLPPLPPS 246
Query: 302 SRGDVEPGDIPS-LLDLG------LSQSAA----MSQVWHGGKPAANSMKGGETEALQRL 350
EP IPS L DL L + A M W +A+ GGE+ LQR+
Sbjct: 247 IPPQKEPFSIPSSLADLKKALLSPLEKDPAYTLKMPPKWPTDAQSAHPFSGGESAGLQRI 306
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM------FDELKKTA 404
A K ++G + G +FS K+S +LA G ++ R + F+E +
Sbjct: 307 AHLVASGAMSSYKQTRNG----MLGLDFSTKLSAYLAQGHITARQVHWAMLDFEEGRGPG 362
Query: 405 TSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
A + GE+ + A + FELLWRD+ R +K+
Sbjct: 363 EKKHA---YGQGENEGTAA----VRFELLWRDYMRLCMRKF 396
>gi|422651895|ref|ZP_16714685.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330964968|gb|EGH65228.1| deoxyribodipyrimidine photolyase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 482
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 139/330 (42%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLRVHDN +L TA + L VY P + + F + ++
Sbjct: 3 LIWLRSDLRVHDNTAL-TAALQRGPTLAVYLLSPTQWRNHDD-----ADCKVDFWLRNLV 56
Query: 187 DLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+L K L L++R PE VL L K + ++ + E +E + ++ ++
Sbjct: 57 ELEKALGKLNVPLLIREADTWDQAPE-VLSSLCKQFKVEGLHLNEEYGINETRRDQAVQQ 115
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLK 298
AM+ +G+ HLD L FK G + T G + + + K V + EA+ +
Sbjct: 116 AMQADGVHFT-------SHLDQLLFKPGSILTKTGNYFQVFTQFKKVCYTRLHEAMPRTV 168
Query: 299 GLPSRGD---VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P ++ IP + + S ++ +W PA GE EA +R++ FA
Sbjct: 169 HTPEAQQPLSIKSDAIPDQVKGFSTPSKSLRDLW----PA------GEVEASRRIEAFAD 218
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
E Q K +D + ++S +L G +SPR + AA N
Sbjct: 219 E-QISYYKDERD-----FPAKPGTSQLSAYLVAGVISPRQ----------CLHAALASNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE + G+ + ELLWR+F++ Y
Sbjct: 263 GEFETGDVGTVTWINELLWREFYKHTLVGY 292
>gi|380513692|ref|ZP_09857099.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas sacchari
NCPPB 4393]
Length = 473
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 12/152 (7%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+IVWFR DLR+HD +L A + + +PVY P D G ++G S+L S+
Sbjct: 4 AIVWFRRDLRLHDQPALQAALDAGHTPVPVYLHSPEDEGAWAAGAASR-----SWLQRSL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L L+ARGS L++R G E L ++ A+AVY +R + +++ +++
Sbjct: 59 AALDAQLRARGSRLILRQGPAEAALRQVIADCSAEAVYWNRRYEPATQPRDARLKRELRE 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG 277
+G+EV H L F+ ++ T GG
Sbjct: 119 QGLEVH-------SHNSALLFEPWQLATQQGG 143
>gi|386060817|ref|YP_005977339.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa M18]
gi|347307123|gb|AEO77237.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa M18]
Length = 476
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 2 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 55
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 56 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 114
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 115 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 167
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 217
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 218 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 261
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 262 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 297
>gi|254238599|ref|ZP_04931922.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719]
gi|126170530|gb|EAZ56041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa C3719]
Length = 394
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 60
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 61 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGVGAVHVNQEYGVNEERRDQAVG 119
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 120 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 172
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 222
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 223 DQHLA---DYHERRDFPALPGTS---QLSPYLAAGVLSPRQCLD----------AALVAN 266
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 267 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 302
>gi|374987968|ref|YP_004963463.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis
BCW-1]
gi|297158620|gb|ADI08332.1| deoxyribodipyrimidine photo-lyase [Streptomyces bingchenggensis
BCW-1]
Length = 466
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 135/320 (42%), Gaps = 44/320 (13%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R S+ F DLRVHDN +L+ A E+ SV+P++ D G + F P RA FL +
Sbjct: 4 RVSVALFTADLRVHDNPALDGALREAESVVPLFVVD---SGIRDADF--VVPNRAVFLAD 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL L+ARG LVVR G +A +GA AV+ S + E ++ A+
Sbjct: 59 CLADLDAALRARGGRLVVRRGDVVQETCRVAARVGAGAVHMAGGASGYAARREARLRVAL 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK---VKGVEIRKTIEALDQLKGL 300
E E++ G+ + G+ + GG + K + + L
Sbjct: 119 ARERRELRVHEGAVTVVAPGVLVPSGKSHSTSGGSQRKDHFAVFTPYYRRWRSEPWRAPL 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMK---GGETEALQRLKKFAAEY 357
P+ V +PS+ L +A+++ P A S+ GGET +
Sbjct: 179 PAPRVVR---VPSIRSAALPTAASLA-------PGAASLDLPAGGETA-----ARRRLRR 223
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
A P + D + G + + ++SP+L GCLSP + A + D
Sbjct: 224 WAAGPLADYAERQDDLAG-DATSRLSPYLHFGCLSP-------------VEVARRALD-- 267
Query: 418 SGSSGAGSNWLMFELLWRDF 437
+ G G+ + +L WRDF
Sbjct: 268 --AGGPGAEAFVRQLAWRDF 285
>gi|380254427|dbj|BAL72538.1| cryptochrome1 [Siganus guttatus]
Length = 581
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 121/289 (41%), Gaps = 24/289 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR+HDN +L + + ++ +Y DP G SS G + R FL++ +
Sbjct: 5 TIHWFRKGLRLHDNPALRDSIRGADTLRCIYILDPWFAGSSSVGIN-----RWRFLLDCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K + + + + + +
Sbjct: 60 EDLDASLRKLNSRLFVIRGQPTDVFPRLFKEWQITRLSYEYDSEPFGKERDAAVHKLASE 119
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEALDQLK 298
G+EV TLY L + G P Y F++ + ++ + T LD+
Sbjct: 120 AGVEVIVRISHTLYSLAKIIELNDGHPPLTYKRFQDIISQMDAVEHPAETVTQRDLDKCT 179
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
S+ + +PSL +LG + VW GGETEAL RL++ +
Sbjct: 180 TPISKNHSDKFGVPSLEELGFETEGLSAAVW----------PGGETEALMRLEQHLEWRE 229
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
+ G + S+ AN + + P+L GCLS R + L + I
Sbjct: 230 SVLNHGCSHIDARSLL-ANPTV-LCPYLRFGCLSCRLFYFRLTELHKKI 276
>gi|398826896|ref|ZP_10585124.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
gi|398219708|gb|EJN06173.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
Length = 508
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 141/360 (39%), Gaps = 65/360 (18%)
Query: 111 HRPLDPNNGAAIRRAS-------------------IVWFRNDLRVHDNESLNTANNESVS 151
H DP NG + RR IVWFR+DLR+ D+ +L+ A
Sbjct: 2 HTAYDPINGRSYRRTRHAFQIVNEASLTTPSAPPIIVWFRDDLRLSDHPALHAAAKTGAP 61
Query: 152 VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLV 211
V+ +Y D + G +L +S+ L + ARG L++R G V+
Sbjct: 62 VVCLYVLD-------DAAGRAPGGAARWWLAQSLRTLGAEIAARGGSLILRKGPAARVVA 114
Query: 212 ELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEM 271
E+ + GA AVY + E ++EAA+ G++ + F G L + K G
Sbjct: 115 EVVRESGASAVYWNGIAQAPHQAVERQLEAALAKLGVDSQSFLGDLLVPPSAIRNKEGRG 174
Query: 272 PTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQV--W 329
+ F R+ + D K LP+ + G P++ L A W
Sbjct: 175 LRVFTPF--------WRRVLALGDPPKPLPAPKQLRAG--PNIASDTLESWALEPTTPDW 224
Query: 330 HGGKPAANSMKGGETEALQRLKKF----AAEYQAQPPKGNKDGNHDSIYGANFSCKISPW 385
GG S GE A RL+ F A Y + +++G + ++SP
Sbjct: 225 AGG--LRESWTPGEASARARLRDFLKTIARSYVGDRDRPDREG----------TSRLSPH 272
Query: 386 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
L G LSPR +F A+++ E+ + G G + EL WR+F R + +
Sbjct: 273 LRFGELSPRQVFH-----------AARFAAAENPALGPGIEKFLSELGWREFCRHLLHDH 321
>gi|423689838|ref|ZP_17664358.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens SS101]
gi|388001680|gb|EIK63009.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens SS101]
Length = 480
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 141/330 (42%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR+HDN +L TA V VY P + P + F + ++
Sbjct: 3 LIWLRTDLRLHDNTALATACQRG-PVAAVYLITPEQWQAHDD-----APCKVDFWLRNLQ 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L + L L++R + TVL +L + + ++V+ + E E + + + A
Sbjct: 57 HLSQALGNLNIPLLIRHAATWDQAPTVLSQLCRELSVESVHVNEEYGIHESRRDSAVAQA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ +G+ + LD L F+ G + T G + + + + V + AL +
Sbjct: 117 LEADGVTFHSY-------LDQLFFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRRVP 169
Query: 300 LPSRGDVEPG----DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P + EPG +P+ ++ + S + +W PA GE EA +RL F A
Sbjct: 170 TP-KAQAEPGVKSDPVPTAVEGFPTPSETLRALW----PA------GEDEARRRLDAF-A 217
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ Q K +D + ++S +LA G +SPR + AA + N
Sbjct: 218 DQQISYYKDERD-----FPAKPGTSQLSAYLAAGVVSPRQ----------CLHAALQTNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE S G+ + ELLWR+F++ I Y
Sbjct: 263 GEFESGDIGAITWINELLWREFYKHILVGY 292
>gi|303276695|ref|XP_003057641.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460298|gb|EEH57592.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 781
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 125 ASIVWFR-NDLRVHDNESL-NTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
A IVWFR DLRVHD+ L A + +V+P++ FDP + + P A L
Sbjct: 373 AHIVWFRAGDLRVHDHPGLAEAAAMTTRAVIPLFVFDPSEIAHGT-------PSDARALH 425
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E+V LR +L+A GSDLVVRVG P + +A A+GA ++ A RE+ V + AA
Sbjct: 426 EAVVALRASLRALGSDLVVRVGDPSMEMPSVAAALGATSLAAARELEWARVAGWRETLAA 485
Query: 243 MKDEGIEV 250
++ G++
Sbjct: 486 LRAAGVKC 493
>gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus]
Length = 525
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 134/336 (39%), Gaps = 27/336 (8%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
R+ ++ WFR LR+HDN SL + + V+ DP G ++ G +K FL+
Sbjct: 22 RKHTVHWFRKGLRLHDNPSLKEGLAGASTFRCVFVLDPWFAGSTNVGINK-----WRFLL 76
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+ + DL +L+ S L V G+P L +L K G + + + I A
Sbjct: 77 QCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEEDSEPFGRVRDHNISAL 136
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVE-----IRKTIEALDQ 296
K+ GI V TLY LD++ + G+ P Y F+ V + + A
Sbjct: 137 CKELGISVVQKVSHTLYKLDEIIERNNGKPPLTYHQFQNIVASMNPPEPPVSTVTAACIG 196
Query: 297 LKGLPSRGDVEPG-DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P + D + +P+L +LG + VW GGE+EAL RL++
Sbjct: 197 NAYTPLKDDHDDHYGVPTLEELGFDTEGLLPPVW----------VGGESEALARLERHLE 246
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
G S+ + +SP+L GCLS R + +L + +
Sbjct: 247 RKAWVASFGRPKMTPQSLLPSQTG--LSPYLRFGCLSTRLFYYQLTDLYKKVQDDC---N 301
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKV 451
L +LLWR+FF K S+ ++
Sbjct: 302 PIVIKKAVPPLSLHGQLLWREFFYCAATKNSNFDRM 337
>gi|449271617|gb|EMC81901.1| Cryptochrome-1 [Columba livia]
Length = 525
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 130/332 (39%), Gaps = 61/332 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I FR LR+HDN +L A S ++ PVY D R + G R FL++S+
Sbjct: 5 TIHLFRKGLRLHDNPTLLAALESSETIYPVYVLDRRFLASAM----HIGALRWHFLLQSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL KNL G+ L+V G+ E+VL + + V E+ + E I +
Sbjct: 61 EDLHKNLSRLGARLLVIQGEYESVLRDHVQKWNITQVTLDAEMEPFYKEMEANIRRLGAE 120
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKG-----VEIRKTIEALDQLKG 299
G EV G +LY L G P Y F + V +R Q
Sbjct: 121 LGFEVLSRVGHSLYDTKRILDLNGGSPPLTYKRFLHILSQLGDPEVPVRNLTAEDFQRCM 180
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
P G E +P DL + + + GGETE L+RL++
Sbjct: 181 SPEPGLAERYRVPVPADLEIPPQ------------SLSPWTGGETEGLRRLEQHLT---- 224
Query: 360 QPPKGNKDGNHDSIYGANF-------------SCKISPWLAMGCLSPRSMFDELKKTATS 406
D + ANF + +SP+ +MGCLS R+ F L ++
Sbjct: 225 -----------DQGWVANFTKPRTIPNSLLPSTTGLSPYFSMGCLSVRTFFQRL----SN 269
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
I A +K + S L +LLWR+FF
Sbjct: 270 IYAQAKHHSLPPVS-------LQGQLLWREFF 294
>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
Length = 522
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 126/310 (40%), Gaps = 51/310 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR LR HDN SL A S V PV+ D D+ K ++G + F+IE +
Sbjct: 9 TIHWFRKGLRFHDNPSLLHALRTSHHVYPVFVMDL-DFMKDFK--IRSGANQWRFVIECL 65
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL L+A G L V G E E + + E H + + D
Sbjct: 66 QDLDTRLRAYGLRLFVARGNAEAFFAEHFRKWNITQLTHDVETEHYHRFRDAAVRKIAVD 125
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGV----EIRKTIEA------- 293
EG+EV + TLY++D + + G P Y F++ +K + +T A
Sbjct: 126 EGVEVVNYVAHTLYNIDKIIEYNGGSAPLTYRQFQKVLKDFGAPPQASETATAEHFASCS 185
Query: 294 --LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
L+ L+ E ++ +L +LG+ H K GGETE L+R++
Sbjct: 186 VPLEALRD-------ERYNMVTLEELGMRCE-------HPSK-----FVGGETEGLRRVE 226
Query: 352 KFAAEY----QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSI 407
K Q + PK S G +SP+ + GCLS R + L K +
Sbjct: 227 KHLQNQGWVTQFEKPKTAPTSLLPSTTG------LSPYFSFGCLSVRHFYHRLDKIYAKL 280
Query: 408 -----SAASK 412
SA+SK
Sbjct: 281 RSHQTSASSK 290
>gi|313107322|ref|ZP_07793517.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016]
gi|386063884|ref|YP_005979188.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa NCGM2.S1]
gi|310880019|gb|EFQ38613.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 39016]
gi|348032443|dbj|BAK87803.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa NCGM2.S1]
Length = 476
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 2 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 55
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 56 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 114
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 115 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 167
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 168 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEKVAQERLRDFA 217
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 218 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 261
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 262 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 297
>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 483
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 128/301 (42%), Gaps = 54/301 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFR DLR+ DN++L A+ ++P+Y +P +++G G +A +L S+
Sbjct: 10 ILWFRKDLRLDDNQALTAAHRSGRPIIPLYIGEP-----AAAGTGPLGAAQAWWLHHSLE 64
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++LQ R LV+ G+ VL K GA+AV+ +R + + +I+ ++ +
Sbjct: 65 ALNRSLQKRHGRLVLASGEALEVLRAFIKESGAEAVFWNRRYDPAGISIDARIKHELEKQ 124
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-----------VEIR-----KT 290
IE + F G L+ L G Y F ++G E+R T
Sbjct: 125 AIEARSFGGQLLHEPSRLMTGNGTPYRVYTPFWRALEGGDEPEPPLEAPAELRLTSQLPT 184
Query: 291 IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL 350
E L+ K LP++ D GD L GE A QRL
Sbjct: 185 SETLESWKLLPTKPDWA-GDFVDL------------------------WTPGEEGAQQRL 219
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGAN-FSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
F E + K N+D Y A + +SP LA+G +SP ++D + + + A
Sbjct: 220 HAF-VEDALEGYKENRD------YPARPATSMLSPHLALGEISPARIWDATRGLSQRVPA 272
Query: 410 A 410
A
Sbjct: 273 A 273
>gi|334348060|ref|XP_003342014.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Monodelphis
domestica]
Length = 585
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 135/327 (41%), Gaps = 55/327 (16%)
Query: 129 WFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDL 188
WFR LR+ N +L + +V VY DP G S+ G ++ FL++ + DL
Sbjct: 8 WFRKRLRLPHNPALKGCIQGADTVCCVYIRDPWFGGSSNFGANEW-----KFLLQCLEDL 62
Query: 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK---- 244
NL+ S L V G+P V L K A + +D ++ +AA+K
Sbjct: 63 DANLRKLNSRLFVIRGQPADVFPRLFKEWNI----AKLSIEYDSEPFGKERDAAIKKLAS 118
Query: 245 DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E T E + +
Sbjct: 119 EAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLATPVETITPEVMHKC 178
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL------K 351
S E +PSL +LG S VW GGETEAL RL K
Sbjct: 179 VTPLSDEHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHLERK 228
Query: 352 KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 229 AWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKKV 276
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 277 KKNSSPPLS-------LYGQLLWREFF 296
>gi|296391481|ref|ZP_06880956.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa PAb1]
gi|416874241|ref|ZP_11918010.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 152504]
gi|334843645|gb|EGM22231.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa 152504]
Length = 481
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 60
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 61 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 120 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 172
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRDFA 222
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 223 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 266
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 267 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 302
>gi|424914362|ref|ZP_18337726.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850538|gb|EJB03059.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 507
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 127/286 (44%), Gaps = 24/286 (8%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
I+WFR DLR+ DN++LN A+ ++P+Y +P +++G G +A +L S+
Sbjct: 34 ILWFRRDLRLDDNQALNAAHLSGRPIIPLYINEP-----AAAGTGPLGAAQAWWLHHSLE 88
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L ++L R LV+ G VL + K GA+AV+ +R + + I+ ++ +
Sbjct: 89 ALDRSLHERQGGLVLASGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQ 148
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKGLPSRGD 305
IE + F G L+ L G Y F ++G E +EA +L+ R
Sbjct: 149 AIEARSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALEGAGEAEPPLEAPAKLRLAAQRPA 208
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
E LL + + +W GE A +RL F E + + K N
Sbjct: 209 SETLKSWKLLPTKPDWAKDFTDLW----------TPGEQGARERLSAF-VEDELKGYKEN 257
Query: 366 KDGNHDSIYGAN-FSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+D Y A + +SP LA+G +SP ++D + + + AA
Sbjct: 258 RD------YPAKPATSMLSPHLALGEISPARIWDATRGLSNRVPAA 297
>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
Length = 359
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 131/315 (41%), Gaps = 43/315 (13%)
Query: 134 LRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQ 193
LR+HDN L A S ++ PVY D R + SS G R +FL++S+ DL KNL
Sbjct: 3 LRLHDNPVLLAALESSEALYPVYILD-RAFLTSSM---HIGALRWNFLLQSLEDLHKNLG 58
Query: 194 ARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253
GS L+V G+ E VL + + V E+ + E I+ + G EV
Sbjct: 59 QLGSCLLVIQGEYEIVLRDHIQKWNITQVTLDAEMEPFYKEMEANIQRLGVELGFEVFSL 118
Query: 254 WGSTLYHLDD-LPFKLGEMPTNYGGFREKVK-----GVEIRKTIEALDQLKGLPSRGDVE 307
+LY+ L G P Y F + V +R Q P G E
Sbjct: 119 VSHSLYNTQRILDLNGGSPPLTYKRFLHILSLLGDPEVPVRNVTAEDFQRCRAPDPGLAE 178
Query: 308 PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY----QAQPPK 363
+P +DL +S + + +GGETE LQRL++ + P+
Sbjct: 179 CYRVPLPVDLKISPE------------SLSPWRGGETEGLQRLERHLTDQGWVTSFTKPR 226
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
+ S G +SP+ +MGCLS R+ F L ++I A +K + S
Sbjct: 227 TVPNSLLPSTTG------LSPYFSMGCLSVRTFFYRL----SNIYAQAKHHSLPPVS--- 273
Query: 424 GSNWLMFELLWRDFF 438
L +LLWR+FF
Sbjct: 274 ----LQGQLLWREFF 284
>gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
Length = 481
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 134/330 (40%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLRV DN +L A +E V+ V+ P+ + P +A+FL +++
Sbjct: 5 LVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPKQWAAHD-----MAPRQAAFLRQNL 59
Query: 186 SDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
L+ L +RG L L + DA++ +++ +E + +E A
Sbjct: 60 QLLQGALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERRRDEAFTA 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I F S L + EM + FR + + +
Sbjct: 120 QLNRQSIACHSFHDSVLLPPGSVQTGNHEMYKIFTPFRRAFIQRLMMSDCRCVPAPQARQ 179
Query: 302 SRGDV-----EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM-KGGETEALQRLKKFAA 355
+ G V EP D P A NS+ GE ALQRL+ F
Sbjct: 180 NSGAVELSPLEPFDYPQ-------------------HSADNSLFPAGEEAALQRLRSFCR 220
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
E Q Q +D +I G SC +SP+LA+G +SPR F+ L+ +
Sbjct: 221 E-QVQDYLQQRD--RPAIAGT--SC-LSPYLALGIVSPRQCFNRLRAECPDLL------- 267
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
E SGA + WL EL+WR+F+R + Y
Sbjct: 268 -ERSDSGAFT-WLN-ELIWREFYRHLLVAY 294
>gi|348680515|gb|EGZ20331.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 708
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/370 (24%), Positives = 144/370 (38%), Gaps = 75/370 (20%)
Query: 114 LDPNNGAAIRRASIVWFRNDLRVHDNESLNT----------ANNESVSVLPVYCFDPRDY 163
+D N A RR +IVWF+ DLR+HDN +L+ A +++LPVY
Sbjct: 107 VDDLNAALPRRRAIVWFKRDLRMHDNLALDAAVRAQQLLQRAGGGDMALLPVYIL----- 161
Query: 164 GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVY 223
+ G R FL+E+V DL K+++ L+V G + VL + A G ++
Sbjct: 162 --HRPKHQRCGAVRFQFLLEAVEDLAKSIKNLQGRLLVLRGDADEVLRAVMTAWGITDLF 219
Query: 224 AHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL--GEMPTNYGGFREK 281
V V + ++ A + ++V G TLY ++ +L G+ PT+Y E
Sbjct: 220 FEAGVMLYSVARDNRVRAVAETLDVKVTSIRGVTLYDPHEI-IRLNGGQPPTDYERLLEI 278
Query: 282 VKGVEIRKTIEAL------------DQL--------KGLPSRGDV-------------EP 308
+ DQL + PS +V EP
Sbjct: 279 TDNMPQPAQPIPAPVKLSNAAAFTPDQLFSWLKHFYRQDPSAANVIAGVEAEKEGATPEP 338
Query: 309 GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDG 368
+P L LGL+ + + + GGE+EA++RL F E + + K
Sbjct: 339 FVVPPLTALGLTPPSPHA-----------AFYGGESEAMKRLDAFCQE-ERRVGLFEKPK 386
Query: 369 NHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWL 428
+ + +S +L GCLS R F + I G + + G
Sbjct: 387 TSPVAFDPPSTTTLSAYLTFGCLSAREFFYRI----MFIQLKFPLRPGPTQVTLEG---- 438
Query: 429 MFELLWRDFF 438
+L+WR+FF
Sbjct: 439 --QLMWREFF 446
>gi|387891969|ref|YP_006322266.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens A506]
gi|387162374|gb|AFJ57573.1| deoxyribodipyrimidine photolyase [Pseudomonas fluorescens A506]
Length = 480
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 141/330 (42%), Gaps = 51/330 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR+HDN +L A+ V VY P + P + F + ++
Sbjct: 3 LIWLRTDLRLHDNTALAAASQRG-PVAAVYLITPEQWQAHDDA-----PCKVDFWLRNLQ 56
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
L + L L++R + TVL +L + + ++V+ + E E + + + A
Sbjct: 57 HLSQALDNLNIPLLIRHAATWDQAPTVLSQLCRELSVESVHVNEEYGIHESRRDSAVAQA 116
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQLKG 299
++ +G+ + LD L F+ G + T G + + + + V + AL +
Sbjct: 117 LEADGVTFHSY-------LDQLFFQPGSVLTKTGTYFQVFSQFRKVCYSRLHSALPRRVP 169
Query: 300 LPSRGDVEPG----DIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA 355
P + EPG +P+ ++ + S + +W PA GE EA +RL FA
Sbjct: 170 TP-KAQAEPGVKSDPVPTAVEGFPTPSETLRALW----PA------GEDEARRRLDAFA- 217
Query: 356 EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWND 415
+ Q K +D + ++S +LA G +SPR + AA + N
Sbjct: 218 DQQISYYKDERD-----FPAKPGTSQLSAYLAAGVVSPRQ----------CLHAALQTNQ 262
Query: 416 GESGSSGAGSNWLMFELLWRDFFRFITKKY 445
GE S G+ + ELLWR+F++ I Y
Sbjct: 263 GEFESGDIGAITWINELLWREFYKHILVGY 292
>gi|347541255|ref|YP_004848681.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
gi|345644434|dbj|BAK78267.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
Length = 469
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 138/328 (42%), Gaps = 55/328 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR DLR+ D+ +L+ A S V+ V+ FD RD D +R F+ S+
Sbjct: 5 ALCWFRRDLRLDDHAALHAALRHSERVICVFVFD-RDILDHLPAQD----HRVDFIWHSL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L+++L+A GSDLVV G+P + LA+ GA V+A R+ + + + +
Sbjct: 60 MELKEHLRALGSDLVVASGRPVDCIPALAQEHGASTVWASRDYEPAACQRDAAVAERLSR 119
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G ++ ++ D++ G+ T + +R I ++A + L
Sbjct: 120 HGTRLETVKDQVIFEQDEVLTVNGKPYTVFTPYRNAWLKKLIPFFLQAYPSTRYLNRLAR 179
Query: 306 VEPGDIPSLLDLGLSQS--------AAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+ +PSL DLG + + A M+ G A + G E Q+ + F A
Sbjct: 180 LAETPLPSLADLGFTDTGLGRLGIRAGMA-----GAAAVFADFGQRIEHYQQWRDFPAA- 233
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
K ++ S++ L G +S R + A W G
Sbjct: 234 --------KGVSYLSVH-----------LRFGTISIRQL------------AQFAWQQGS 262
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKY 445
+G+ + WL EL+WR+F++ + Y
Sbjct: 263 AGA----TTWLN-ELIWREFYQQLLWHY 285
>gi|116052805|ref|YP_793122.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421176913|ref|ZP_15634571.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CI27]
gi|115588026|gb|ABJ14041.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404530283|gb|EKA40290.1| deoxyribodipyrimidine photolyase [Pseudomonas aeruginosa CI27]
Length = 481
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 147/337 (43%), Gaps = 53/337 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+++WFR DLR DN +L A + V +Y P + + P + F + ++
Sbjct: 7 NLIWFRCDLRTTDNSALLAAADGRPCV-ALYLLSPAQWREHDDA-----PCKVDFWLRNL 60
Query: 186 SDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L++ L A L+VR PE V+ L + +G AV+ ++E +E + ++ +
Sbjct: 61 GELQRQLAALNIPLLVRDCGHWRQAPE-VIGRLCRELGIGAVHVNQEYGVNEERRDQAVG 119
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEAL 294
++++G+ HLD L F G + T GG+ + KV + + + +
Sbjct: 120 QRLREQGVAFHS-------HLDQLFFAPGSVLTRTGGYFQVFSQFRKVCHERLYQALPGV 172
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
+ +P + + ++ ++W PA GE A +RL+ FA
Sbjct: 173 RPRPQPQPPHALASDPLPDAVPAFPRPADSLRRLW----PA------GEEVAQERLRGFA 222
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
++ A ++ + ++ G + ++SP+LA G LSPR D AA N
Sbjct: 223 DQHLA---DYHERRDFPALPG---TSQLSPYLAAGVLSPRQCLD----------AALVAN 266
Query: 415 DGE-SGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE SG + W+ ELLWR+F++ I Y +
Sbjct: 267 RGEFSGGQQGAATWIN-ELLWREFYKHILVGYPRVSR 302
>gi|388582367|gb|EIM22672.1| hypothetical protein WALSEDRAFT_53945 [Wallemia sebi CBS 633.66]
Length = 554
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 127/295 (43%), Gaps = 33/295 (11%)
Query: 129 WFRNDLRVHDNESL-NTANNESVSVLPVYCFDPRDYGKSSSGFD-KTGPYRASFLIESVS 186
WFR DLR+HD +L + + PV+ +DP FD GP R FLIE+++
Sbjct: 8 WFRTDLRLHDAPALVKGLELKPEAFFPVWAWDP------YFNFDCPVGPNRYKFLIETMN 61
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L L G+ L V P + L K + ++ + V+ +EKI+ D
Sbjct: 62 ELDGKLNDMGNKLHVFRADPADLFPALFKQWNITHLVYEKDPAPYAVERDEKIKQIATDA 121
Query: 247 GIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA------LDQLKG 299
+EV G TLY +D + K GE T GF+ VK +EI + E D LK
Sbjct: 122 KVEVLDITGHTLYDIDAVIEKNKGEPTTTAQGFKNLVKDMEIPRPTEGPTSMPKADNLKL 181
Query: 300 LPSRGDV---EPG-DIPSLLDLG-------------LSQSAAMSQVWHGGKPAANSMKGG 342
R +V +PG DI + G + S + ++ + K A + GG
Sbjct: 182 EAIRKEVKLFKPGHDINAEHRKGRMTVYDSVTGVKDILASPTLEELGYDVKEATTQIPGG 241
Query: 343 ETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
E EAL+RL K+ + A K + Y + ++SP++ G L R +
Sbjct: 242 EDEALRRLDKWIQDEDAT-ATFRKPQTSPAEYDPPATTQLSPYIKFGALGVREFY 295
>gi|46446306|ref|YP_007671.1| photolyase [Candidatus Protochlamydia amoebophila UWE25]
gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
Length = 471
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 128/288 (44%), Gaps = 29/288 (10%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPV--YCFDPRDYGKSSSGFDKTGPYRASFLIE 183
SIVWFR D R+ DN +LN A + V+PV + F+P + G +L
Sbjct: 5 SIVWFRQDFRLEDNPALNAATQKGGPVIPVFNWVFNPEKEWQ-------LGGASQWWLYY 57
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ L+ +L G L++R P L+E+A GAD VY +R ++ + KI+ +
Sbjct: 58 SLISLKNDLSELGLSLIIRKEDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKIKTEL 117
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK-VKGVEIRKTIEALDQLKGLPS 302
+ +GI+ F G+ L+ + K G+ + F + +K + + LK
Sbjct: 118 QKQGIKAHSFNGNLLFEPWTIANKQGKPFQVFTPFWNQCLKLNDPEVPLPVPHSLKKFVG 177
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWH-GGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
+ E D +LL + + +VW G K A +K G T + + + + P
Sbjct: 178 QLQTESIDSLNLLP-KIKWDKGLKEVWSPGAKSAKALLKKGLTGVIDQY----LDIRDLP 232
Query: 362 PKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
+HD + +SP+L G +SPR ++ +K+ +TS A
Sbjct: 233 -------DHDG------TSLLSPYLHFGEISPRMIWQAVKENSTSKGA 267
>gi|374711980|gb|AEZ64510.1| deoxyribodipyrimidine photolyase [Streptomyces chromofuscus]
Length = 461
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 133/326 (40%), Gaps = 44/326 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++V F +DLR+HDN SL A + V+P++ D R GF P R +FL + +
Sbjct: 4 AVVLFTSDLRLHDNPSLRAALAAADEVIPLFVRDRR---IEELGF--AVPNRRAFLADCL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL L+ RG LVVR G+ + +A GA VY VS ++ E ++ A++
Sbjct: 59 RDLDAGLRERGGRLVVRSGEVAEEVCRVAAGTGARDVYVAGGVSGHALRREGRLRGALES 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+G + G +Y F + + + LD + +P D
Sbjct: 119 QGRRLHVHDAVVTAVAPGAVTPAGSGTDHYAVFTPYFRRWSRERIRDPLDAPRTVPVPRD 178
Query: 306 VEPGDIPSLLDL-GLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
V +PS ++ G+S+ A +GGE A +RL + A+
Sbjct: 179 VGSEALPSRAEVSGVSEGLA---------------EGGERAARRRLTAWRRTGLAR---- 219
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
+ HD + G + + ++SP L G LSP + + + G G
Sbjct: 220 -YEDRHDDLAG-DATSRLSPHLHFGTLSPAELVHRAR-----------------AAGGPG 260
Query: 425 SNWLMFELLWRDFFRFITKKYSSAKK 450
++ + +L WRDF + SA +
Sbjct: 261 ADAFVRQLCWRDFHHQVLAARPSAAR 286
>gi|78183823|ref|YP_376257.1| deoxyribodipyrimidine photolyase [Synechococcus sp. CC9902]
gi|78168117|gb|ABB25214.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus sp. CC9902]
Length = 477
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 128/277 (46%), Gaps = 27/277 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN + A S +V VY DP S P R FL+ES+
Sbjct: 7 LFWHRRDLRLADNLGIQAAVEISPAVTGVYVLDPALIQPPQS-LPPMAPARLWFLLESLI 65
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ +A GS L++ G P VL LA+ +GA+AV +R+V + + ++ ++ +
Sbjct: 66 ELQQRWRAAGSRLLILEGDPVQVLPPLAERLGAEAVVWNRDVEPYSRERDRQVAKRLQAD 125
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRK--TIEALDQLKGLPSR 303
G +V W L + L G+ YG F +G V+ ++ TIEA L L S
Sbjct: 126 GRKVVVDWDQLLIPPELLKTGAGDPYRVYGPFLRNWRGKVQAQQPITIEAPSGLVDLHS- 184
Query: 304 GDVEPGDIP--SLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQP 361
D+ P P +LL Q + + GE+ AL++L FA P
Sbjct: 185 -DLVPDRDPLAALLHRHGFQGTEIC-----------PCRPGESAALEQLTLFA----DGP 228
Query: 362 PKGNK-DGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
G + D N S+ G ++ +S L++G LSPR +
Sbjct: 229 LSGYEPDRNFPSVVGTSY---LSAALSVGTLSPRQAW 262
>gi|399543313|ref|YP_006556621.1| Cryptochrome DASH [Marinobacter sp. BSs20148]
gi|399158645|gb|AFP29208.1| Cryptochrome DASH [Marinobacter sp. BSs20148]
Length = 393
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 119/281 (42%), Gaps = 43/281 (15%)
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G +R FL +S+ L ++L+A G L + G PETV+ LA + R+ E
Sbjct: 2 GHHRWRFLWQSLIGLERSLRAMGQRLHIAWGDPETVIPALALGHAISRIVRSRQPGTREA 61
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRK---- 289
+ ++ + I + L+ LP L ++P + FR+ ++ R
Sbjct: 62 VQWQTLQDKLPK--IAFTQYETLGLFTESLLPMPLQDLPATFSQFRKLIEKKGDRGPARL 119
Query: 290 ---TIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEA 346
T++ L GLP D G+ P++ + +Q +A S GGE
Sbjct: 120 RIPTVKMLPPAPGLP---DDNRGECPAIQEP--TQPSAFS--------------GGEQAG 160
Query: 347 LQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
L RL+ F A A +++ N S K SPWLA GCLS R + D S
Sbjct: 161 LARLRDFLAGTHA---IDTYKETRNALDDWNSSSKFSPWLAHGCLSAREIAD-------S 210
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
IS + +S + WL FE+LWR++F + ++ S
Sbjct: 211 ISLYE-----QQHTSNESTYWLWFEVLWREYFYWYALRHGS 246
>gi|400288682|ref|ZP_10790714.1| deoxyribodipyrimidine photolyase [Psychrobacter sp. PAMC 21119]
Length = 460
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/366 (25%), Positives = 155/366 (42%), Gaps = 56/366 (15%)
Query: 118 NGAAIRRASIVWFRNDLRVHDNESLNTANNESVS--VLPVYC------FDPRDYGKSSSG 169
N + ++V F NDLRV DN +L A+ S +L VY D +D+ +
Sbjct: 7 NNSENNNVTLVLFHNDLRVADNATLLKASEISTKGKLLLVYASSLTDILDSKDH-YDAYR 65
Query: 170 FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPE--TVLVELAKAIGADAVYAHRE 227
+D G R FL ES++DL +L RG+ L+ E V +L+ I V
Sbjct: 66 YDSIGQARQQFLHESLADLNASLIQRGNRLLYLQKGNEALNVFTQLSNLIAQQQV-TDIC 124
Query: 228 VSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV----- 282
+S ++ K+ ++ + E+ + +T D+LP L ++P ++ FR+++
Sbjct: 125 ISQTADYNQNKVYDLLQAKYPEIHWHIDTTATLFDELP--LEQLPKSFTQFRKQIESDYD 182
Query: 283 -----KGVEIRKTIEALDQL-KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAA 336
K + I T E+L L + + SR + + LS A + +P+
Sbjct: 183 LLHAEKDIAIYPTPESLAPLPESMQSRDEY-------FFESQLSNQAGRDEP--SQQPS- 232
Query: 337 NSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 396
S +GGE L+ L + K ++ D + S K S WLA G LS ++
Sbjct: 233 -SFRGGELNGLKHLDAYFCSDAPSTYKTTRNALDDWTH----STKFSAWLANGSLSVNTV 287
Query: 397 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA----KKVV 452
+ L++ I A ND G + FELLWR++F + + K +
Sbjct: 288 LNRLRRYERDIIA----NDSTYG--------IWFELLWREYFYWYATTHKEKLFWFKGIA 335
Query: 453 EAVPAT 458
+ P+T
Sbjct: 336 QHAPST 341
>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
Length = 539
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 149/329 (45%), Gaps = 39/329 (11%)
Query: 123 RRASIV-WFRNDLRVHDNESL-------NTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
+ A++V WFR LRVHDN +L NTA + V P++ DP + + G
Sbjct: 4 KHATLVHWFRKGLRVHDNPALSQIFKVANTAPGKYF-VRPIFILDP-----GILDWMQVG 57
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
R FL +++ DL + LQ GS L V GKP V + K+ + + ++ +
Sbjct: 58 ANRWRFLQQTLHDLDQQLQKLGSRLFVVRGKPAEVFPRIFKSWRVELLTFETDIEPYSLA 117
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEA 293
+ ++ K +G++V+ T+Y+ + + K LG+ P Y F V+ +++ ++
Sbjct: 118 RDSAVQKLAKSDGVKVETHCSHTIYNPELVIAKNLGKAPITYQKFLGIVEKLKLPTVLDL 177
Query: 294 LDQLKG--LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
++LK P + D+E D + + Q + GGETEAL+R++
Sbjct: 178 PEKLKEKVQPPKDDIEEKDSEAYDCPTMEQLVKRPE-----DLGPLKFPGGETEALRRME 232
Query: 352 KFAAE--YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
+ + + A+ K N N S+ + + +SP+L GCLS R LK+ +
Sbjct: 233 ESLKDELWVARFEKPNTAPN--SLEPS--TTVLSPYLKFGCLSSRLFHQRLKEILKRQTK 288
Query: 410 ASKWNDGESGSSGAGSNWLMFELLWRDFF 438
S+ L+ +++WR+F+
Sbjct: 289 HSQ-----------PPVSLIGQMMWREFY 306
>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
Length = 469
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 141/319 (44%), Gaps = 51/319 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ W R DLR+ D+ +L++A +S V+ V+ FD R S D+ R F+ S+
Sbjct: 6 SLCWLRRDLRLDDHAALSSALQQSREVVCVFVFD-RAILDSLPASDR----RVDFIHRSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+L+ LQ GS LV R G + L LA +GA V+A ++ V + ++ ++
Sbjct: 61 CELQARLQQHGSTLVCRYGWADEALPALAAELGAQVVFAAQDDEPASVTRDARVAGQLEQ 120
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF-REKVKGVEIRKTIE-----ALDQLKG 299
G + TL D+L + G T + + R + + E LD+L
Sbjct: 121 AGCILHLVKDHTLRARDELLTRTGTPFTVFTPYARAWLARLAPADMAEWPVAPYLDRLCP 180
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
LP++ +PSL +G + + + W G A + A++
Sbjct: 181 LPAQ------PLPSLASMGFTDTGLAALGWQAGSTGAQAA--------------LAQFLP 220
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
+ P +++ + ++ + + ++SP L G LS R +L + AT ++G
Sbjct: 221 RLPLYHEERDFPAL---DATSRLSPHLRFGTLSVR----QLVRLAT-----------DAG 262
Query: 420 SSGAGSNWLMFELLWRDFF 438
GA + WL EL+WRDF+
Sbjct: 263 HEGAQA-WLN-ELVWRDFY 279
>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
Length = 480
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 18/243 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR++DN L A + V+ ++CFDP S R ++L+ +
Sbjct: 5 LFWHRRDLRLNDNLGLAAAYTRTPKVVGLFCFDPAILSASD-----IAAVRVAYLVGCLQ 59
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ + G ++ G P +L ++AK +GA AV+ H +V + + + AA+K++
Sbjct: 60 ALQEAYRRLGGSFLIFRGDPRQILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAALKEK 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE------KVKGVEIRKTIEALDQLKGL 300
GI V+ W L+ + + K G+ T Y F K + V + +E L +++
Sbjct: 120 GIAVETAWDQLLHPPEAIQTKQGQPYTVYSPFWRNWSSLAKPEPVSAPRHLEPLTEIEQ- 178
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE--YQ 358
+ G + +P+ DLG S + + G+ AA + ET Q ++ + + Y
Sbjct: 179 ATAGTLGAICLPTAKDLGFHWSGDL--ILAPGEAAAQAQL--ETFIDQHIQDYGEQRNYP 234
Query: 359 AQP 361
AQP
Sbjct: 235 AQP 237
>gi|381399807|ref|ZP_09924825.1| DNA photolyase FAD-binding protein [Microbacterium laevaniformans
OR221]
gi|380772870|gb|EIC06556.1| DNA photolyase FAD-binding protein [Microbacterium laevaniformans
OR221]
Length = 448
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 127/280 (45%), Gaps = 36/280 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+VWFR+DLR+ DN +L A + ++ V D + S+G G +L S+
Sbjct: 6 SLVWFRDDLRLADNPALRAAVDRGEPIIAVSVLD-----EQSAGVRPLGGAARWWLHHSL 60
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
++L + L+ +GS LV+R G V+ LA+ +GA AV+ +R S E + + ++ +++
Sbjct: 61 AELGERLREKGSGLVLRRGAASEVIPSLAREVGAGAVFWNRRYSASEREVDAGLKTSLRA 120
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEI----RKTIEALDQLKGL- 300
G+EV F S L+ + G T YG F K + R+ + +L G+
Sbjct: 121 GGLEVSSFAASLLFEPWTVRTGAG---TPYGVFTPFWKACQQLPAPREPLPEPRELHGVS 177
Query: 301 --PSRGDVEP-GDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
P+ D++ G +P+ D W GG GE A +RL F AE
Sbjct: 178 SYPASDDLDDWGLLPTRPD------------WAGG--LLERWTPGELAARRRLHAFLAED 223
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
A + D D G S +SP L G LSP ++
Sbjct: 224 VA-----DYDHARDEPAGGATSM-LSPRLRWGELSPFQVW 257
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 121/279 (43%), Gaps = 37/279 (13%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+I WFR DLR+ D L A E +VLPV+ DP G S G +L S+
Sbjct: 5 TIFWFRQDLRLTDLPGL-CAAAERGAVLPVFIHDP-SLGNEWS----LGGASQWWLHYSL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
L+ +++ARG +L++R G PE VL L + GA AVY+ R+ E + + D
Sbjct: 59 KSLQASIEARGGELILRRGAPEDVLTALIEESGASAVYSSRQYQPWATSLETTLHETLTD 118
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
EGI+ K + G+ L F+ G + T GG KV R ++ S
Sbjct: 119 EGIDYKRYAGTLL-------FEPGSVLTG-GGTPYKVFTPFWRACLQ---------SEAP 161
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG-------GETEALQRLKKFAAEYQ 358
EP IP + + + + + W+ N G GE A +RL F A
Sbjct: 162 REPRSIPDV-EWHVGVRSESVEDWNLRPSNPNWADGWESLWSPGEEGATRRLDDFLA--- 217
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
K DG I ++ ++SP L G +SPR ++
Sbjct: 218 -GTVKHYGDGR--DIPAEAYTSRLSPHLKFGEISPRQIW 253
>gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
Length = 481
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 127/315 (40%), Gaps = 40/315 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
RA I W R DLR+ D+ L A V+PV+ D +S + +R +E
Sbjct: 5 RAIIYWLRRDLRLADHPGLAAAAASGRPVVPVFIHD-----ESVAALGAAPAFRLGLGLE 59
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
L GS L++R G VL L GA AV+ RE + + + ++ A+
Sbjct: 60 RFG---ATLGDMGSRLILRRGSAPAVLQALIAETGAGAVWWTREYTPQAITRDSALKTAL 116
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
+ GIE + F G+ L+ + G Y F V ++ + A D
Sbjct: 117 QQAGIEARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVS----QREVSAPDPAPARVRP 172
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
+ PG +L D GL A M + G A GE AL+RL +F A
Sbjct: 173 PEAWPGS-EALSDWGL--GAPMRR---GAAVVATHQAPGEAAALERLDRFIAT-----GI 221
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
G D D G + + +S L++G + PR+++ GE+ GA
Sbjct: 222 GQYDACRDLPAG-DGTSTLSDALSLGEIGPRTLWHRA---------------GEAAHKGA 265
Query: 424 -GSNWLMFELLWRDF 437
G+ + +L+WRDF
Sbjct: 266 QGAETFLKQLVWRDF 280
>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
NSW150]
gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
longbeachae NSW150]
Length = 472
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 60/304 (19%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR DLR++DN + A + V+P+Y +D ++ G +A +L S+
Sbjct: 4 ALVWFRFDLRLNDNPAFIEACSHHQFVIPLYIYDEKN--------SVLGGAQAWWLYHSL 55
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L +L RG +L++R G P ++++LAK + +VY +R + ++ I+A + +
Sbjct: 56 TSLSNSLAQRGLNLILRKGDPLEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKATLLE 115
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK----------------GVEIRK 289
GI+V GS L+ + K G+ + + + K GVE++
Sbjct: 116 RGIDVHSSNGSLLHEPWTIRNKSGDYFKVFTPYWKHCKQLINIQRPMNLEHRPVGVEVQS 175
Query: 290 TIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQR 349
E L+ K LP+ ++ +A S+ W GE A Q+
Sbjct: 176 --ELLNDWKLLPT----------------INWAARFSEYW----------IPGEGGAQQK 207
Query: 350 LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD--ELKKTATSI 407
LK+F E+ K N+D N + ++SP L G +SP ++ EL K +
Sbjct: 208 LKEF-IEHHLNGYKNNRD-----FPIKNATSRLSPHLHFGEISPWTILRAIELAKLNPNC 261
Query: 408 SAAS 411
AS
Sbjct: 262 DLAS 265
>gi|388457015|ref|ZP_10139310.1| deoxyribodipyrimidine photolyase [Fluoribacter dumoffii Tex-KL]
Length = 469
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 153/340 (45%), Gaps = 48/340 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VWFR DLR++DN + A + V+P+Y +D GK+S +G + +L S
Sbjct: 3 VALVWFRYDLRLNDNPAFIEACSHHQFVIPLYIYD----GKNSV----SGEAQDWWLHHS 54
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++ L ++L G +L++R G P ++ +L K + +VY +R + ++KI+AA+
Sbjct: 55 LTSLSESLAQLGLNLILRKGDPFEIISDLVKKLSVSSVYWNRCYEPAAISRDKKIKAALL 114
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+ GIEV+ GS L+ + K G+ + F K + I+ L+ P+
Sbjct: 115 ERGIEVQSSNGSLLHEPWTIKNKNGDY---FKVFTPYWKHCKQHLNIQPSMYLENRPAGI 171
Query: 305 DVEPGDIPSLLDL-GLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
+V+ + L ++ +A S+ W GE A Q+L +F E+ K
Sbjct: 172 EVQSEVLKDWKLLPAINWAAQFSEYW----------TPGEAGAQQKLHEF-IEHHLNDYK 220
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD--ELKKTATSISAASKWNDGESGSS 421
N+D N + ++SP L G +SP ++ EL K + +S
Sbjct: 221 KNRD-----FPIKNATSRLSPHLHFGEISPWTILRAIELAKLNPNCDLSS---------- 265
Query: 422 GAGSNWLMFELLWRDF-----FRFITKKYSSAKKVVEAVP 456
++ + EL WR+F + F Y + + +A P
Sbjct: 266 ---ADHFLSELGWREFSVYLLYHFPKLPYENFRSEFDAFP 302
>gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|423208514|ref|ZP_17195068.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|404618359|gb|EKB15279.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
Length = 473
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 139/321 (43%), Gaps = 40/321 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+ DN +L A V ++ P + + K P R F++ V
Sbjct: 3 LVWFRNDLRLADNPALRHACAGDEPVAALFIISPTQWRQH-----KMAPIRQRFMLAQVD 57
Query: 187 DLRKNLQARGSDL-VVRV---GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L + L A G L ++RV + VL L + G +YA++ + DE++ + + AA
Sbjct: 58 ELGRELAALGIQLHLLRVETFAEVPAVLANLCREQGVTQLYANQAIEIDELRRDHAVSAA 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++ + +F G + + GEM + F R +++LD+ +
Sbjct: 118 LAEQAVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFS--------RAWLKSLDEEGFVIH 169
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
R G+ L L++ A + + G GE EAL+RL F QA
Sbjct: 170 RAPTPRGE--PLPWQPLAERAWVDEA-LGELTVDPRWPVGEAEALRRLNIFLE--QAVLD 224
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
G + +I G + +SP+LA G +SPR L++ G S
Sbjct: 225 YGETR-DFPAIAGTSV---LSPYLAAGIISPRQCVAVLQQRL-----------GYRPQSK 269
Query: 423 A--GSNWLMFELLWRDFFRFI 441
A G WL EL+WR+F+R +
Sbjct: 270 AQPGFVWLN-ELIWREFYRHL 289
>gi|359073433|ref|XP_002693610.2| PREDICTED: cryptochrome-2 [Bos taurus]
Length = 591
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 134/328 (40%), Gaps = 48/328 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R S L
Sbjct: 20 SSVHWFRKGLRLHDNPALLAAVRGAHCVRCVYILDPWFAASSSVGIN-----RWSRLCRK 74
Query: 185 VSDLRKNLQA-RGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
LR+ +A S G E +++ + + G + + + + I
Sbjct: 75 TPTLRRGSRATEPSPRRGEAGTGEAIMIPVVQEWGVTRLTFEYDSEPFGKERDTAIMKMA 134
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLP 301
K+ G+EV TLY LD + G+ P Y F+ + +E+ RK + ++ +
Sbjct: 135 KEAGVEVVTENSHTLYDLDKIIELNGQKPPLTYKRFQAIISRMELPRKPVGSVTSQQMEG 194
Query: 302 SRGDV-----EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK---- 352
R ++ E +PSL +LG VW +GGETEAL RL K
Sbjct: 195 CRAEIQESHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLER 244
Query: 353 --FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 245 KAWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV--- 293
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 294 -KRNSTPPLS-------LFGQLLWREFF 313
>gi|430761658|ref|YP_007217515.1| Deoxyribodipyrimidine photolyase [Thioalkalivibrio nitratireducens
DSM 14787]
gi|430011282|gb|AGA34034.1| Deoxyribodipyrimidine photolyase [Thioalkalivibrio nitratireducens
DSM 14787]
Length = 489
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 138/318 (43%), Gaps = 33/318 (10%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A++VW R DLR+ D +L+ A V+PV+ P + G +L S
Sbjct: 3 ATLVWLRRDLRLADQPALHAAVERGAPVIPVFVHAPEEETPWQPGAASNW-----WLHHS 57
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++ L + L+ RGS L++R G L EL + GADAV+ +R + + +I+ ++
Sbjct: 58 LARLSEALERRGSQLILRRGPTLGTLRELVRDTGADAVFWNRLYEPALIPRDREIKHHLR 117
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+ G+ V+ F + L+ + G + F + + I T L + + +P+
Sbjct: 118 ESGLRVESFNAALLHEPWCIRSGSGNPYRVFSPFWKSCRQAGIDDT--PLPEPQAIPAPS 175
Query: 305 DVEPGDIPSLLDLGLSQS-AAMSQV----WHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
G P S+ AA++ + W G A + GE AL RL+ F E A
Sbjct: 176 ASTAGTQPRAARWPASEPLAALALLPRIRWDAG--LAETWTPGEAGALVRLRDF-LETSA 232
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
+ +D + G + ++SP L G +SPR + L+ D +SG
Sbjct: 233 ERYHAMRD-----LPGQPGTSRVSPHLHFGEISPRQIVRALRDAGF---------DPDSG 278
Query: 420 SSGAGSNWLMFELLWRDF 437
G++ + E+ WR+F
Sbjct: 279 ----GADQFLSEIGWREF 292
>gi|343403537|dbj|BAK61591.1| cryptochrome2a [Glycine soja]
gi|343403539|dbj|BAK61592.1| cryptochrome2a [Glycine soja]
gi|343403541|dbj|BAK61593.1| cryptochrome2a [Glycine soja]
gi|343403543|dbj|BAK61594.1| cryptochrome2a [Glycine soja]
gi|343403545|dbj|BAK61595.1| cryptochrome2a [Glycine soja]
gi|343403547|dbj|BAK61596.1| cryptochrome2a [Glycine soja]
gi|343403549|dbj|BAK61597.1| cryptochrome2a [Glycine soja]
Length = 631
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 130/280 (46%), Gaps = 35/280 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALTAAAKEG-SVLPVYVWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG-----GETEALQRLKKFAAEY 357
G +E SL +LGL + KP +N++ G G A + L++F +
Sbjct: 177 EGKIEEC---SLEELGLENESE--------KP-SNALLGRAWSPGWRNADKALREFVELH 224
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
K G + +SP+L G LS R +F
Sbjct: 225 LLHYSKKRLK------VGGESTSLLSPYLHFGELSARKVF 258
>gi|351734424|ref|NP_001235220.1| cryptochrome 2 [Glycine max]
gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max]
Length = 634
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 130/280 (46%), Gaps = 35/280 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALTAAAKEG-SVLPVYVWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG-----GETEALQRLKKFAAEY 357
G +E SL +LGL + KP +N++ G G A + L++F +
Sbjct: 177 EGKIEEC---SLEELGLENESE--------KP-SNALLGRAWSPGWRNADKALREFVELH 224
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
K G + +SP+L G LS R +F
Sbjct: 225 LLHYSKKRLK------VGGESTSLLSPYLHFGELSARKVF 258
>gi|318078311|ref|ZP_07985643.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. SA3_actF]
Length = 487
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ASIV + +DLR+HD+ L A E+ V+P++ DP G GF RA+FL +
Sbjct: 2 KASIVLYTSDLRLHDHPPLRAAVREAEEVVPLFVRDP---GIKKVGFHAAN--RAAFLAD 56
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DL L+ RG LVVR G P V+ EL + GA+ V+ VS +++ AA+
Sbjct: 57 CLGDLDAGLRERGGRLVVRAGDPAQVVRELVGSTGAERVHVAAGVSAYARNRADRLRAAL 116
Query: 244 KDEGIEV 250
+ G E+
Sbjct: 117 EGTGAEL 123
>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
Length = 484
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 126/286 (44%), Gaps = 24/286 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +IVWFRNDLRV+DN +L A++ V+PVY +P ++ G R +L
Sbjct: 10 RPAIVWFRNDLRVNDNAALLAASSHK-QVVPVYILEP------AANTRAIGGARKWWLHH 62
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S++ L + L G+ L++ G P ++ L + A AVY +R + S+ ++ A+
Sbjct: 63 SLAKLGEKLADLGAPLMLMRGDPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDAL 122
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALDQLKGLPS 302
+ + I V+ F G L+ + Y F ++ G+E R+ A D+L L +
Sbjct: 123 RAQDIVVESFAGQLLHEPTRVRTGNDTFYKVYSPFWRAIEGGIEDREPAPAPDRLTALAN 182
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
E LL + + + W K GE A +RL +F +E
Sbjct: 183 APQSETLSDWGLLPTKPDWARGLRETW----------KPGEDGAHERLDEFVSE------ 226
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
+ + + G + ++SP LA G ++P + LK + S
Sbjct: 227 RVCGYASLRDVPGVESTSRLSPHLANGEITPAQIIQALKASDADAS 272
>gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 474
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 129/311 (41%), Gaps = 39/311 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR DLR+ D+ +L+ A V+PV+ D S D G L ++
Sbjct: 9 LIWFRQDLRLSDHPALSAAVRSGRPVIPVFIRD--------SLVDDLGAAPKWRLSLGLA 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L +NL+ +GS LV+R G L L GA VY R D + + I++ + +
Sbjct: 61 ALAQNLEHKGSKLVLRSGPALDALKALIDETGAREVYWSRAYDPDAIARDTHIKSVLTEL 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
G+ K F G L+ + K G+ + V ++ A ++L P
Sbjct: 121 GLTAKSFPGHLLFEPWTVATKTGKPFRVFTPMWRAVAQRDVPSPDPAPERLAAPPLWPAS 180
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
E L D GL AM + G ++ GET A RL F A P +
Sbjct: 181 E-----HLDDWGLGH--AMRR---GAGIVGQHVQAGETAAEARLDAFMERLDAYP--AQR 228
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
D D + + +S +LA+G + PR+++ +K A GS GA +
Sbjct: 229 DALAD-----DGTSHLSEYLALGEIGPRTVWHRVKGAAL------------IGSIGADA- 270
Query: 427 WLMFELLWRDF 437
+ +L+WR+F
Sbjct: 271 -FLRQLVWREF 280
>gi|157369495|ref|YP_001477484.1| deoxyribodipyrimidine photolyase [Serratia proteamaculans 568]
gi|157321259|gb|ABV40356.1| Deoxyribodipyrimidine photo-lyase [Serratia proteamaculans 568]
Length = 476
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 143/332 (43%), Gaps = 47/332 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VW RNDLR+ DN++L+ A ++ VL V+ P+ + + + P + +F+ ++
Sbjct: 5 LVWLRNDLRITDNKALHAACSDPDARVLAVFIATPQQWRQH-----EMAPRQVAFIHANL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEA 241
+++ L RG L V+ A A D ++ +R+ +E + ++++E
Sbjct: 60 LQVQQALAERGIPLGYHQCDDFAAAVDWLTAYCAQQQVDRLFYNRQYEINERQRDQRLEQ 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
+ + I + F S L + GEM Y FR+ I++L K P
Sbjct: 120 RLSGQAI-CQSFDDSLLLPPGSVQTGSGEMYKIYTPFRKAFIQRLTESDIQSLPAPK--P 176
Query: 302 SRGDVEP-GDIPSLLDLGLSQSAAMSQVWHGGKPAA--NSMKGGETEALQRLKKFAAEYQ 358
G P IP D PA GE ALQRL+ F E Q
Sbjct: 177 RAGGALPVTAIPEAFDY---------------PPAEPNEDFPAGEEAALQRLRSFCRE-Q 220
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
Q +D +I G + +SP+LA+G LSPR F+ L+ + + +S
Sbjct: 221 VQDYLEQRD--LPAIAG---TSSLSPYLAIGVLSPRQCFNRLRAECPQLL-----ENHDS 270
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
G+ G WL EL+WR+F+R + Y + K
Sbjct: 271 GAFG----WLN-ELIWREFYRHLMVAYPALCK 297
>gi|224004440|ref|XP_002295871.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209585903|gb|ACI64588.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 571
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 100/397 (25%), Positives = 150/397 (37%), Gaps = 104/397 (26%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFD-------------KT 173
++W R DLR+ DNE + A + ++ FD DY S+G
Sbjct: 6 LIWHRRDLRLADNELYSNA----AKIYSLFVFDTADYTPRSTGISAGGDRGDDYVYNVNN 61
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI---------------- 217
GP+ L+E+V LR NL+ G DL+VR G P ++ LAK +
Sbjct: 62 GPHFTRRLLEAVHSLRNNLRDLGGDLIVRHGNPLEIIPSLAKELQVEEVAWSEVPGYYEW 121
Query: 218 ------------GADAVYAHRE-------------------------VSHDEVKSEEKIE 240
GAD YAHR ++ + K +++
Sbjct: 122 VQSEKLKQILMDGADEGYAHRRKICTSVTTTLMHPDDLPKDQPTWERLARPKEKRKKQKP 181
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDL-PFKLGEMPTNYGGFREKVKGVE-IRKTIEALDQLK 298
AA E +Y ++ + D+ P + MP+ G FR + V IR+ E +
Sbjct: 182 AATASVAHEERYTTHTSFNSIVDISPPRFVGMPSIMGDFRRVARTVAPIRELSEPIHSQC 241
Query: 299 GLPSRGDVEPGDIPSL-------LD-----LGLSQSAAMSQVWHG-GKPAANSMKGGETE 345
D+ IP+L LD LGLS+ V P + E E
Sbjct: 242 IANDVSDINTDGIPTLEELTQPLLDSQHPILGLSKELIHKLVQSARALPREYNSNVEEIE 301
Query: 346 ALQRLKKFAAEYQAQPPKGNKD--GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKT 403
LQ LK F + A + D G+H S K+S LA+G LSPR ++ +K
Sbjct: 302 HLQ-LKLFVRHHAATAERNLCDVSGSH--------SSKLSVPLALGTLSPRQIYRYVKSE 352
Query: 404 ATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRF 440
+ G + +S G W++ L RD+F F
Sbjct: 353 QEQL--------GNTTTSPDGIAWIINHLEIRDYFLF 381
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 138/328 (42%), Gaps = 46/328 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIES 184
I WFR DLR+ DN +L A + V+PV+ FD G+ +S P R FL++
Sbjct: 3 IHWFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFAS------PARTQFLLDC 56
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
++ L L+ G LVVR G P L ++ + GA V +R+ + V+ + I+ A++
Sbjct: 57 LAALDAELRTFGLHLVVRRGDPLRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQALR 116
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF--REKVKGVEIRKTIEALDQLKGLPS 302
+ G E F + ++ + ++ G T Y + R + + T++ + +L +P
Sbjct: 117 EAGYEAHSFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSRLAAEPVTVQDMPRLATIPL 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
EP +P L DL A + + GE AL+ L++F A
Sbjct: 177 PVS-EP--LPHLTDLLPDAPATLPR-----------FPAGEAVALEALERFVRGPLASYA 222
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
+G + + ++SP+L +G LSPR S
Sbjct: 223 QGR------DLMAVAGTSRLSPYLRLGVLSPRQCVAAALAAPPGPGPES----------- 265
Query: 423 AGSNWLMFELLWRDFFRFITKKYSSAKK 450
W+ EL+WRDF+ + + A +
Sbjct: 266 ----WIG-ELIWRDFYVQVLYHFPHALR 288
>gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
Length = 473
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 132/311 (42%), Gaps = 38/311 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W+R DLR+ D+ +L+ A N V+PV+ D KS + +R + +++
Sbjct: 8 LLWYRRDLRLSDHPALSAAANAGRPVIPVFIKD-----KSVNALGAAPKWRLGLGVGALA 62
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
D +L+ S L++R G L L K GA VY R D V+ + KI+ + ++
Sbjct: 63 D---SLEGVSSRLILREGDALEALQALIKETGAGTVYWSRLYDPDSVQRDSKIKETLCND 119
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GIE K F G ++ + K G+ Y F VK ++ + A L S D
Sbjct: 120 GIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEPPLSAPSDLPAPESWPDS 179
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
+ D G AAM + G + GE A RL F A A K +
Sbjct: 180 DALD-------GWGLGAAMDR---GADVVRRFVCLGEKAAQSRLGAFMAHGVAD-YKLTR 228
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
D I G + + +S L++G +SP + ++ +DG+ G+
Sbjct: 229 D-----IPGTDGTSNLSENLSLGEISPHQCWHAAQRAL---------HDGKQGAET---- 270
Query: 427 WLMFELLWRDF 437
+ EL+WR+F
Sbjct: 271 -FLKELVWREF 280
>gi|429212758|ref|ZP_19203923.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. M1]
gi|428157240|gb|EKX03788.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. M1]
Length = 475
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 150/342 (43%), Gaps = 59/342 (17%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R ++W R+DLRV DN S A ++ V+ Y P G+ + D P + F +
Sbjct: 2 RRQLLWLRSDLRVRDN-SALAAAAQAGPVIACYLLSP---GQWRAHDDS--PNKVDFWLR 55
Query: 184 SVSDLRKNLQARGSDLVVRVGK-----PETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
++ L+++L L++R PE VL++L +++G AV + E E + +E
Sbjct: 56 NLQALQRDLARLNIPLLLREADTWSQAPE-VLLQLCRSLGIAAVRVNEEYGIHESRRDEA 114
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALD 295
++ + + G+ HLD L F G + T GG+ + + + + ++ AL
Sbjct: 115 VKRRLAEAGVGFH-------SHLDQLLFAPGSLLTRGGGYFQVFSQFRKLCYQRLATALP 167
Query: 296 Q-LKGLPSRGDVEPGDIPSLLDL-GLSQSAAMS-QVWHGGKPAANSMKGGETEALQRLKK 352
L P++ +E P +L G + SA ++ + W G+ AA +RL
Sbjct: 168 SCLPAPPAQAPLEVNSAPVPRELPGFTPSATLAREFWPAGEKAAG----------ERLDG 217
Query: 353 FA----AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
FA A Y + + + DG + ++S +LA G LSPR +
Sbjct: 218 FAEDGLAHYHERRDRPDLDG----------TSQLSAYLAAGVLSPRQ----------CLH 257
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
AA N GE S G G + ELLWR+F++ I + +
Sbjct: 258 AALANNRGEFESGGPGPVAWINELLWREFYKHILVGFPQVSR 299
>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
gi|357603254|gb|EHJ63675.1| cryptochrome [Danaus plexippus]
Length = 534
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/332 (23%), Positives = 144/332 (43%), Gaps = 49/332 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVS-VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+++WFR+ LR+HDN SL++A ++ S P++ FD G G++ R +L+E
Sbjct: 4 GNVIWFRHGLRLHDNPSLHSALEDASSPFFPIFIFDGETAGTKMVGYN-----RMRYLLE 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+++DL + + G L++ G+P+ + L + G + ++ + + A
Sbjct: 59 ALNDLDQQFRKYGGKLLMIKGRPDLIFRRLWEEFGIRTLCFEQDCEPIWRPRDASVRALC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGV-EIRKTIEALD----QL 297
+D G+ + TL++ D + G + P Y F V+ + + ++ +D
Sbjct: 119 RDIGVSCREHVAHTLWNPDTVIKANGGIPPLTYQMFLHTVEIIGNPPRPVDDVDLNGVNF 178
Query: 298 KGLPS---RGDVEPGDIPSLLDLGLS-QSAAMSQVWHGGKPAANSMKGGETEALQRLK-K 352
LP R V P DLG+ ++ + + GGET AL++++ +
Sbjct: 179 GSLPESFYREFVVFDKAPKPEDLGVFLENEDIRMI---------RWVGGETAALKQMQER 229
Query: 353 FAAEYQA------QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
A EY+ P GN D + G S +SP L GCLS R + L+
Sbjct: 230 LAVEYETFCRGSYLPTHGNPD-----LLGPPIS--LSPALRFGCLSVRRFYWSLQDLFQQ 282
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ A + ++ +L+WR++F
Sbjct: 283 VHQGRL----------ASTQFITGQLIWREYF 304
>gi|413953894|gb|AFW86543.1| hypothetical protein ZEAMMB73_862701 [Zea mays]
Length = 632
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 146/337 (43%), Gaps = 55/337 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
++VWFR DLR+ DN +L A SVLP++ + P DYG+ G R S +L +
Sbjct: 7 TVVWFRRDLRIQDNPALAAAAKGG-SVLPIFIWCPSDYGQYYPG-------RCSRWWLKQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETV--LVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+ L K+L+ G LV+ + T+ L+E ++I A V +R + + KI+
Sbjct: 59 SLVHLGKSLELLGCPLVLIRAEDSTLAALLECVRSISATRVVYNRLYDPISLVLDNKIKN 118
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG--VEIRKTIEALDQLKG 299
+ GI ++ F G LY D+ + G+ T + + EK +EI + + A +L
Sbjct: 119 ELPAHGISIQSFNGDLLYEPWDVYDENGQAFTTFNKYWEKCMSLPIEISQYL-APTRLVA 177
Query: 300 LPSRGDVEPGDIPSLLDLGL-------SQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
P +V I DLGL S +A +S+ W G A +M L++
Sbjct: 178 APGLANVRCCSID---DLGLESSKDVESSNALLSRAWSPGWRNAENM----------LEE 224
Query: 353 FAA----EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
F + EY H G + + +SP+L G LS R ++ +K
Sbjct: 225 FVSYGLLEY----------SEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQV--- 271
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
KW + + + + +R++ R++ Y
Sbjct: 272 ---KWQNEGKSEAEESVRLFLRSIGFREYSRYLCFNY 305
>gi|356576533|ref|XP_003556385.1| PREDICTED: cryptochrome-2-like [Glycine max]
Length = 634
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 133/280 (47%), Gaps = 35/280 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYIWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ T LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG-----GETEALQRLKKFAAEY 357
G VE + P L +LGL + KP +N++ G G A + L +F ++
Sbjct: 177 EGKVE--ECP-LEELGLENESE--------KP-SNALLGRAWSPGWRNADKALTEFVEQH 224
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
K DS + +SP+L G LS R +F
Sbjct: 225 LLDYSKKRLKVGGDS------TSLLSPYLHFGELSVRKVF 258
>gi|413953893|gb|AFW86542.1| hypothetical protein ZEAMMB73_862701 [Zea mays]
Length = 654
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/337 (25%), Positives = 147/337 (43%), Gaps = 55/337 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
++VWFR DLR+ DN +L A SVLP++ + P DYG+ G R S +L +
Sbjct: 7 TVVWFRRDLRIQDNPALAAAAKGG-SVLPIFIWCPSDYGQYYPG-------RCSRWWLKQ 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETV--LVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
S+ L K+L+ G LV+ + T+ L+E ++I A V +R + + KI+
Sbjct: 59 SLVHLGKSLELLGCPLVLIRAEDSTLAALLECVRSISATRVVYNRLYDPISLVLDNKIKN 118
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG--VEIRKTIEALDQLKG 299
+ GI ++ F G LY D+ + G+ T + + EK +EI + + A +L
Sbjct: 119 ELPAHGISIQSFNGDLLYEPWDVYDENGQAFTTFNKYWEKCMSLPIEISQYL-APTRLVA 177
Query: 300 LPSRGDVEPGDIPSLLDLGL-------SQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
P +V S+ DLGL S +A +S+ W G A +M L++
Sbjct: 178 APGLANVR---CCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENM----------LEE 224
Query: 353 FAA----EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
F + EY H G + + +SP+L G LS R ++ +K
Sbjct: 225 FVSYGLLEY----------SEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQV--- 271
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
KW + + + + +R++ R++ Y
Sbjct: 272 ---KWQNEGKSEAEESVRLFLRSIGFREYSRYLCFNY 305
>gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max]
Length = 634
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 133/280 (47%), Gaps = 35/280 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYIWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ T LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG-----GETEALQRLKKFAAEY 357
G VE + P L +LGL + KP +N++ G G A + L +F ++
Sbjct: 177 EGKVE--ECP-LEELGLENESE--------KP-SNALLGRAWSPGWRNADKALTEFVEQH 224
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
K DS + +SP+L G LS R +F
Sbjct: 225 LLDYSKKRLKVGGDS------TSLLSPYLHFGELSVRKVF 258
>gi|410671657|ref|YP_006924028.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
gi|409170785|gb|AFV24660.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
Length = 459
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 140/340 (41%), Gaps = 78/340 (22%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
SI FR DLR+ DN L A S V+P + FDPR GF+ P FL+ES+
Sbjct: 8 SIFVFRRDLRIDDNLGLRAAVESSDEVIPCFIFDPRLASSKRLGFN---PNAFQFLLESL 64
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL++ +A+G L + G E ++ +LA +GADAV+ + + + + +E K
Sbjct: 65 EDLQRQFKAKGGRLYLFSGIAEDIIGQLAGKLGADAVFVNEDYTPFSRRRDEATRNTCK- 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
G++VK+ T H D L + G + T G + Q S+ +
Sbjct: 124 -GLDVKF----TQVH-DCLLNEQGTVLTQQG------------RPYVVFSQFFRAGSKRN 165
Query: 306 VEPGDIPSLL--------DLGLSQSAAMSQVWHGGKPAANSM---KGGETEALQ------ 348
+ IPS+L + G+ ++ A ++ P N +GG T+ALQ
Sbjct: 166 IS---IPSMLAEGKFYTGEPGIEETPASEKLL----PLKNEKLFSRGGRTQALQVLEDLS 218
Query: 349 RLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
R + +AAE+ +G + +S +G +S R + ++
Sbjct: 219 RFENYAAEHDYPSLQG--------------TTGLSAHNKLGTISIREFYHYVRNEL---- 260
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
GE L+ +L WRDFF I + S
Sbjct: 261 -------GEDHP-------LIRQLYWRDFFTHIAHHFPSV 286
>gi|336451493|ref|ZP_08621930.1| cryptochrome, DASH family [Idiomarina sp. A28L]
gi|336281306|gb|EGN74586.1| cryptochrome, DASH family [Idiomarina sp. A28L]
Length = 484
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFR +LRV +N +L A +++ L V+C+D + Y + G + P RA FL ESV
Sbjct: 9 LVWFRRNLRVANNPALEAAADSQHAKPLGVFCYD-QQYTGTWLGMPRCAPLRAKFLWESV 67
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL++ LQ G +L+V+ +PET+L +L + + V+ R +H+EV + E++ A+
Sbjct: 68 QDLQQQLQQMGGELIVQAEEPETLLPKLCQELNITHVHTQRLFAHEEVAAAERVLQALNA 127
Query: 246 EGI 248
G+
Sbjct: 128 IGV 130
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 17/109 (15%)
Query: 339 MKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFD 398
KGGET +RL+ +AA G+ + + GA++S K+SPWL +GC+SP +
Sbjct: 262 FKGGETAGQRRLQDYAA-----SAVGHYKETRNGLIGADYSSKLSPWLNLGCISPAQVLQ 316
Query: 399 ELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+++ + E G++ A + WL+ ELLWRDFF+F+ ++ +
Sbjct: 317 AVREY-----------EAEHGAN-ASTEWLIVELLWRDFFQFLAAEHGA 353
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 87/325 (26%), Positives = 144/325 (44%), Gaps = 52/325 (16%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + V+ V+C DP + SG D P R ++++ +
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDP----EILSG-DDIAPVRVAYMLGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+++ Q GS L++ P L +LA A+GA AVY +++V + + +E ++ +
Sbjct: 61 CLQEDYQRGGSQLLIIQDNPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEV 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTI-----EALDQLK--G 299
GI+V+ FW L H + F + P KV RK I E +LK G
Sbjct: 121 GIKVETFWDQVL-HSPEAIFTGSKEPY-------KVYTPYWRKWIQQPKPEPCQRLKSTG 172
Query: 300 LP---SRGDVEPGDI--PSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
L + +E G I P+ DLG S ++ GET A RL+ F
Sbjct: 173 LTEAQEKAALEAGAIALPTAKDLGFIWSEPF------------ILEPGETAASDRLEIFC 220
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
+ +G N +I G + +SP L G + R+++ + ++ I A ++ +
Sbjct: 221 DRAIYEYDEGR---NFPAIDGTSV---LSPALRFGAIGIRTLWQKTQE----IIALTRSD 270
Query: 415 DGESGSSGAGSNWLMFELLWRDFFR 439
+ W EL WR+F++
Sbjct: 271 EARHHI----QTWQQ-ELAWREFYQ 290
>gi|168060079|ref|XP_001782026.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666517|gb|EDQ53169.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 711
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 27/233 (11%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
++ +IVWF++DLR D+ L A V+P++ FD Y S R + L
Sbjct: 4 KKTAIVWFKHDLRTDDHPGLAFAAQYD-HVIPLFIFDSSFYAGCSEE-------RLASLF 55
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS---HDEVKSEEKI 239
++V+DLR++L++ GS LV+R + VL+ LA+ +GA + A EV HD V S
Sbjct: 56 DAVADLRRSLKSIGSTLVIRRARVNDVLLNLAQEVGASTIIAEEEVEEIWHDLVASVSAS 115
Query: 240 EA--AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
+ ++ + EVK W ++LY ++ + ++P NY F K G + + A +
Sbjct: 116 LSVKSLSGQKTEVKQ-WNASLYDVEGIE----DLPDNYKEF--KRMGRRVLPPVNAPTSI 168
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL 350
LP+ D+E G +PSL D L+ S A S+ P + ++ +T+ + L
Sbjct: 169 PALPA--DIEEGHLPSLKDF-LASSKAKSK----ENPYSEVLRAAQTQPAESL 214
>gi|408785938|ref|ZP_11197678.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
gi|408488127|gb|EKJ96441.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
Length = 479
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 135/312 (43%), Gaps = 38/312 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
IVWFR DLR+ DN +L A + V+PVY + K + + +L S++
Sbjct: 9 IVWFRKDLRLSDNLALLAAADHKGPVIPVYIRE-----KCCGALGRAQEW---WLHHSLT 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L L+ GS LV+ G E VL L GAD V+ +R + + +++ ++ A++DE
Sbjct: 61 ALHAALKKTGSRLVLASGDAEEVLRRLIAETGADTVFWNRRYDPEGISTDKTLKRALRDE 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVEIRKTIEALDQLKGLPSRGD 305
G+ V+ F G L+ L K G Y F ++ G E +A D+L +
Sbjct: 121 GLTVRSFSGHLLHEPSKLQTKSGGPYRVYTPFWRALEGGEEPHAPADAPDRLNTPRNWPR 180
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
E D LL + S +W GE A ++L F KG
Sbjct: 181 SETLDEWQLLPKRPDWAREFSDIW----------TPGEDGAREKLSDFI----DGALKGY 226
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
++G + + + ++SP LA+G +SP +++ K + I++ ND
Sbjct: 227 EEGR--DLPAKDATSRLSPHLALGEISPATVWHATKGLSRHIAS----NDISR------- 273
Query: 426 NWLMFELLWRDF 437
E++WR+F
Sbjct: 274 --FRKEIVWREF 283
>gi|343403555|dbj|BAK61600.1| cryptochrome2c [Glycine soja]
gi|343403559|dbj|BAK61602.1| cryptochrome2c [Glycine soja]
gi|343403563|dbj|BAK61604.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 133/280 (47%), Gaps = 35/280 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYIWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ T LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG-----GETEALQRLKKFAAEY 357
G VE + P L +LGL + KP +N++ G G A + L +F ++
Sbjct: 177 EGKVE--ECP-LEELGLENESE--------KP-SNALLGRAWSPGWRNADKALTEFVEQH 224
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
K DS + +SP+L G LS R +F
Sbjct: 225 LLDYSKKRLKVGGDS------TSLLSPYLHFGELSVRKVF 258
>gi|343403561|dbj|BAK61603.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 133/280 (47%), Gaps = 35/280 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYIWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ T LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG-----GETEALQRLKKFAAEY 357
G VE + P L +LGL + KP +N++ G G A + L +F ++
Sbjct: 177 EGKVE--ECP-LEELGLENESE--------KP-SNALLGRAWSPGWRNADKALTEFVEQH 224
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
K DS + +SP+L G LS R +F
Sbjct: 225 LLDYSKKRLKVGGDS------TSLLSPYLHFGELSVRKVF 258
>gi|410912170|ref|XP_003969563.1| PREDICTED: uncharacterized protein LOC101062553 [Takifugu rubripes]
Length = 1321
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 144/343 (41%), Gaps = 45/343 (13%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ I WFR LR+HDN L A + + PV+ DP+ + KS G R FL
Sbjct: 1 MTHTCIHWFRKGLRLHDNPGLMAALRDCKELYPVFILDPQLHNKS------VGVNRCRFL 54
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
I ++ DL +L+ + L V GKPE V +L + + + ++ +
Sbjct: 55 IGALKDLDLSLRQLNTRLFVVRGKPEEVFPKLFCQWKITKLTYEYDTEPLSLSRDKTVTR 114
Query: 242 AMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
++ GI+V TL+ ++ + G+ P Y + VK + K ++E L
Sbjct: 115 LAEEHGIDVVCKVSHTLFDINRIIEENNGKTPLTYKSMQAIVKKLGPPKRPLSAPSMEDL 174
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S + IP+L D G + + + GGE EAL+RL
Sbjct: 175 KDVNTPCSESHEKKYRIPTLEDFGHNLADLPEE----------QFPGGEQEALRRLEEHM 224
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
K+ A + PK + + S + +SP++ GCLS R+ + L
Sbjct: 225 KRTAWVCNFEKPKTSPNSLSPS------TTVLSPYVTFGCLSVRTFWWRL---------- 268
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKKVVE 453
S +G+ S+ S L +LLWR+FF + S+ K+V+
Sbjct: 269 SDVYEGKKHSAPPVS--LHGQLLWREFFYTASVGISNFNKMVD 309
>gi|343403557|dbj|BAK61601.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 133/280 (47%), Gaps = 35/280 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYIWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ T LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG-----GETEALQRLKKFAAEY 357
G VE + P L +LGL + KP +N++ G G A + L +F ++
Sbjct: 177 EGKVE--ECP-LEELGLENESE--------KP-SNALLGRAWSPGWRNADKALTEFVEQH 224
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
K DS + +SP+L G LS R +F
Sbjct: 225 LLDYSKKRLKVGGDS------TSLLSPYLHFGELSVRKVF 258
>gi|388600247|ref|ZP_10158643.1| deoxyribodipyrimidine photolyase [Vibrio campbellii DS40M4]
Length = 398
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 43/275 (15%)
Query: 174 GPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
G + FL ES+ L +L A L V P + + +G +Y +E
Sbjct: 3 GSAKRQFLDESLHCLNLSLNAFDQRLQVVDLHPYQAIKHAVEKLGVTHLYCDAFPGSEEQ 62
Query: 234 KSEEKIEAAMKDEGI---EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKT 290
+ I ++ I EV+ +L ++DLPF L ++P + FR+ + V +++
Sbjct: 63 DVVDHIRQELEHLTICQQEVR-----SLLTVEDLPFALEDLPDTFTKFRKMAENVSLKEP 117
Query: 291 IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL 350
+ L +P L L L + V + GGE L+
Sbjct: 118 FATVTALPPIP-------------LGLALPTLRLIRDV------KSCLFTGGEQAGLEHA 158
Query: 351 KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
+++ + A K ++G + G ++S K SPWLA GCLSP++++ LK+ A
Sbjct: 159 RRYFSSTLASEYKQTRNG----LDGMDYSTKFSPWLAHGCLSPKTIYAMLKRYERLKGA- 213
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + +++
Sbjct: 214 -----------NESTYWIYFELLWREYFYWYARRH 237
>gi|398942256|ref|ZP_10670194.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM41(2012)]
gi|398160808|gb|EJM49063.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. GM41(2012)]
Length = 497
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 142/333 (42%), Gaps = 57/333 (17%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R+DLR+ DN +L+ A +V VY P + + P + F + ++S
Sbjct: 19 LIWLRSDLRLQDNTALSAAAARGPTV-AVYLLSPEQWLEHDDA-----PCKVDFWLRNLS 72
Query: 187 DLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+LR L L++R + VL++L + + V+ + E E + + +
Sbjct: 73 ELRGALDELNIPLLIRKASRWDEAPRVLLDLCQQLKIGVVHVNEEYGIHESRRDAAVAET 132
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG-LP 301
+K I+ +LD L K G + T G + + + RK D+L+G LP
Sbjct: 133 LKANCIDF-------FSYLDQLLLKPGTVLTKTGTYFQVFS--QFRKV--CYDRLRGSLP 181
Query: 302 SR---------GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
R + IPS ++ + S ++ ++W PA GE EA +RL
Sbjct: 182 KRVAAPAAQAPLAISSDKIPSNVEGFATPSDSLRRLW----PA------GEAEAHRRLDT 231
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
FA + Q K +D + ++S +LA G +SPR + AA +
Sbjct: 232 FA-DAQIDDYKSERD-----FPAKPGTSQLSAYLAAGVISPRQ----------CLHAALQ 275
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
N GE S G+ + ELLWR+F++ I Y
Sbjct: 276 SNQGEFESGKVGTVTWINELLWREFYKHILVGY 308
>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
Length = 536
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 140/330 (42%), Gaps = 45/330 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
S++WFR+ LR+HDN SL++A E S P++ FD G G++ R +L+E
Sbjct: 4 GSVLWFRHGLRLHDNPSLHSALEETSGPFFPIFIFDGETAGTKVVGYN-----RMRYLLE 58
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ DL K + G L++ GKP V L + G + ++ +E ++ A
Sbjct: 59 ALDDLDKQFKKYGGRLLLVKGKPSAVFRRLWEEFGIRKLCFEQDCEPVWRPRDESVKTAC 118
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
++ G+ + TL+ D + G + P Y F V I +D K
Sbjct: 119 REIGVTCREHVSHTLWEPDTVIKANGGIPPLTYQMFLHTV--ATIGDPPRPVDNAKLRGI 176
Query: 303 RGDVEP----------GDIPSLLDLGLS-QSAAMSQVWHGGKPAANSMKGGETEALQRLK 351
+ P +P+ DLG+ ++ + + GGET AL++++
Sbjct: 177 KFGTLPLCFYEEFTVYDKVPNPEDLGVFLENEDIRMI---------RWVGGETAALKQMQ 227
Query: 352 -KFAAEYQAQPPKGNKDGNHDS--IYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
+ A EY+ +G+ H S + G S +SP L GCLS R + L+ +
Sbjct: 228 HRLAVEYETF-CRGSYLPTHGSPDLLGPPIS--LSPALRFGCLSVRKFYWSLQDLFQQVH 284
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
S + ++ +L+WR++F
Sbjct: 285 QGSL----------CSTQYITGQLIWREYF 304
>gi|295840351|ref|ZP_06827284.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
gi|295827937|gb|EFG65724.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SPB74]
Length = 455
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ASIV + +DLR+HD+ L A E+ V+P++ DP G +GF T P RA+FL +
Sbjct: 2 KASIVLYTSDLRLHDHPPLRAATREAEEVVPLFVRDP---GIEKAGF--TAPNRAAFLAD 56
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ L L+ RG LVVR G P ++ EL + GA+ V+ +S +++ A+
Sbjct: 57 CLAGLDAGLRERGGRLVVRAGDPVRIVRELVGSTGAERVHVAAGLSAYARGRADRLRTAL 116
Query: 244 KDEGIEV 250
+ G E+
Sbjct: 117 EGTGAEL 123
>gi|357139910|ref|XP_003571518.1| PREDICTED: (6-4)DNA photolyase-like [Brachypodium distachyon]
Length = 547
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 145/329 (44%), Gaps = 41/329 (12%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASFLI 182
+VWFR LRVHDN +L+ A + V PV+ DPR D S G + G R FL+
Sbjct: 17 MVWFRKGLRVHDNPALDAARRGAARVYPVFVLDPRYLRPDPAAHSPGSARAGVARVRFLL 76
Query: 183 ESVSDLRKNLQARGSDLVVRVGK---PETVLVELAKA-IGADAVYAHREVSHDEVKSEEK 238
ES+SDL L+ GS L++ + P+ + L IG A E + +++
Sbjct: 77 ESLSDLDAGLRRLGSRLLLLRARDDVPDALCAALRDWNIGKLCFEADTEPY--ALARDKR 134
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
+ GIEV TL+ ++ K G P Y F + G + + +L
Sbjct: 135 VTDFAAALGIEVFTPVSHTLFDPAEIIEKNGGRPPLTYQSFL-AIAGEPPKPVMAEYSEL 193
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+ G+ E +P L +LG +SQ + +GGETEAL+R+++ +
Sbjct: 194 PLIGDTGEYELLPVPKLEELGYGD---ISQ------ENISPFRGGETEALKRMRESLQDK 244
Query: 358 QA----QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKW 413
+ + PKG+ S + + +SP+L GCLS R + +++ S +K
Sbjct: 245 EWVSMFEKPKGDP-----SAFLKPATTVLSPYLKFGCLSSRYFYHCIQEVYRSTKKHTKP 299
Query: 414 NDGESGSSGAGSNWLMFELLWRDFFRFIT 442
+G +LLWRDFF ++
Sbjct: 300 PVSLTG-----------QLLWRDFFYTVS 317
>gi|348175729|ref|ZP_08882623.1| deoxyribodipyrimidine photo-lyase [Saccharopolyspora spinosa NRRL
18395]
Length = 453
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 48/281 (17%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R +I F DLRVHDN L A V+P++ FD ++ T P R +FL+
Sbjct: 2 RTTICLFTRDLRVHDNPVLRHAARAD-RVVPLFVFD-----ETLLQLPFTRPNRIAFLLG 55
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLR++L G LVVR G P + L +GA V+ +VS E + A+
Sbjct: 56 CLRDLRRSLGEAGGGLVVRHGTPAIEVARLVDEVGATEVHVAADVSAYARSRENGLRLAL 115
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGE----MPTNYGGFREKVKG--VEIRKTIEALDQL 297
+ G + H G+ + T Y FR V+ I EAL
Sbjct: 116 AEHGCTLHVHEAVVTAHPPGRVTPAGKDHFAVFTPY--FRRWVETPPRRIAAAPEALRMP 173
Query: 298 KG-----LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK 352
G +P+R D+ PG + L +GGET A Q++ +
Sbjct: 174 DGVRTGPMPAREDLCPGALSPELP-----------------------RGGETTARQQMLR 210
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSP 393
+ + A + D HD + G + + ++SP+L GCLSP
Sbjct: 211 WFEQGVA-----DYDEGHDDLAG-DATSRLSPYLHFGCLSP 245
>gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max]
Length = 634
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 130/280 (46%), Gaps = 35/280 (12%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIE 183
+IVWFR DLR+ DN +L A E SVLPVY + P++ G+ G R S +L +
Sbjct: 6 TIVWFRRDLRIEDNPALAAAAKEG-SVLPVYVWCPKEEGQFYPG-------RVSRWWLKQ 57
Query: 184 SVSDLRKNLQARGSDLV-VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
S++ L ++L++ GS LV ++ LVE KAI A V + + + I+
Sbjct: 58 SLAHLDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEK 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++GI V+ + G LY ++ + G T + F +K +++ + + + +P+
Sbjct: 118 LVEQGISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQM-DIVSVVPPWQLIPA 176
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKG-----GETEALQRLKKFAAEY 357
G +E SL +LGL + KP +N++ G G A + L++F +
Sbjct: 177 EGKIEEC---SLEELGLENESE--------KP-SNALLGRAWSPGWRNADKALREFVELH 224
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
K G + +SP+L G LS R +F
Sbjct: 225 LLHYSKKRLK------VGGESTSLLSPYLHFGELSARKVF 258
>gi|443473438|ref|ZP_21063462.1| Deoxyribodipyrimidine photolyase [Pseudomonas pseudoalcaligenes
KF707]
gi|442904175|gb|ELS29291.1| Deoxyribodipyrimidine photolyase [Pseudomonas pseudoalcaligenes
KF707]
Length = 476
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 146/336 (43%), Gaps = 53/336 (15%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++WFR DLRV DN +LN A L ++ P + P + F + +++
Sbjct: 4 LIWFRTDLRVQDNTALNAALAAG-PTLALFLVSPGQWQAHDD-----APAKVDFWLRNLA 57
Query: 187 DLRKNLQARGSDLVVRVGKPET------VLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+L + L+A L++R K +T V+ E+ + V + E E + + ++
Sbjct: 58 ELARALRALNVPLLIR--KADTWSDAPAVIREICRIHDIGTVQVNEEYGIHESERDRQVR 115
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE---KVKGVEIRKTIEALDQL 297
A + +G++++ HLD L F+ G + T GG+ + + + V ++ AL
Sbjct: 116 ACLGADGVDLR-------SHLDQLFFRPGSLLTQSGGYFQVYSQFRKVCYQRLHSALPSC 168
Query: 298 KGLPS-RGDVE-PGDIPSLLDLGL-SQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
LP + D+ P D+P G + S + Q+W PA GE A +RL FA
Sbjct: 169 LPLPGPQQDLGIPSDVPPCTVDGFPAPSEQLRQLW----PA------GEAAARERLDAFA 218
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
E D D A S ++SP+LA G +SPR + AA N
Sbjct: 219 LE-----ALWCYDDRRDFPARAGTS-QLSPYLAAGVISPRQ----------CLHAALANN 262
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
GE S G+ + ELLWR+F++ I Y +
Sbjct: 263 QGEFDSGNPGAVCWINELLWREFYKHILVGYPRVSR 298
>gi|318041065|ref|ZP_07973021.1| deoxyribodipyrimidine photo-lyase [Synechococcus sp. CB0101]
Length = 251
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 122/280 (43%), Gaps = 40/280 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
++VWFR DLR+ D+ +L+ A N+ +VLPV+ D RD +T R +F++ +
Sbjct: 3 CTVVWFRRDLRLSDHAALSEACNQG-AVLPVFVLD-RDL----LFHPETAVARVAFMLNN 56
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ L +L+ RG L++R G P L+++ + GAD V AH + E++ ++
Sbjct: 57 LQALDADLRQRGGRLLIRCGDPAEQLLQVVQLSGADGVIAHTD--------SERLVGRVR 108
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
D + + GE+ Y G+ + + A +++ P
Sbjct: 109 DARVSRTLAAHRIPLRWVEPAGACGEL-MAYSGWSRQWHQAMASPALPAPERVVVPPPSS 167
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM-KGGETEALQRLKKFAAEYQAQPPK 363
+ +PSL LGL +P A + GG AL+RL++F +
Sbjct: 168 ALPDTPVPSLEALGL-------------RPDAKPIPPGGTAAALKRLEQFC--------E 206
Query: 364 GNKDGNHD---SIYGANFSCKISPWLAMGCLSPRSMFDEL 400
G+ ++ S A + +SP+L G +SPR L
Sbjct: 207 GSASRSYYWELSYPSAKVTTGLSPYLKFGVISPRQCLQRL 246
>gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
Length = 474
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 134/315 (42%), Gaps = 40/315 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R I W R DLR+ DN +L A ++P+Y DP+D +R +E
Sbjct: 5 RPVIWWIRRDLRLRDNPALTAALETGGPIIPLYIHDPQD-----EALGAAPKFRLGLGLE 59
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ K L+ GS L +R G VL E+ K GA V R + +K + +I+ +
Sbjct: 60 RFA---KTLEGHGSRLTLRKGDALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQL 116
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSR 303
K I VK G ++ + K G M Y F + V+ E+ I+A L
Sbjct: 117 KAADITVKSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPANLP----- 171
Query: 304 GDVEPGDIPSLLDLG-LSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
+P P+ +L + SAAM + G + A + G+ AL++L +F E + Q
Sbjct: 172 ---KPDAWPATDELADYNISAAMRR---GAEIVAGYCRVGDDAALEQLDRFLEE-RVQTY 224
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++D + + ++S LA G +SP M+ A DG+ G+
Sbjct: 225 KADRDFPSRAA-----TSELSENLAWGEISPHRMWH---------LGAQAMRDGKQGAEH 270
Query: 423 AGSNWLMFELLWRDF 437
+ E++WR+F
Sbjct: 271 -----FLKEVVWREF 280
>gi|313674183|ref|YP_004052179.1| deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
gi|312940881|gb|ADR20071.1| Deoxyribodipyrimidine photo-lyase [Marivirga tractuosa DSM 4126]
Length = 433
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 23/210 (10%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + SI WFR DLR++DN +L A E++ VLP++ FD D R +F+
Sbjct: 1 MEKISIFWFRRDLRLYDNTALYYAIQENIPVLPLFIFDSEILDDLKDKSDA----RVNFI 56
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
+ ++++ L+ GS ++++ GKPE V L K AV+ +R+ ++ ++KI+
Sbjct: 57 HDQLTEINDQLKKIGSGVLIKHGKPEEVYKSLIKEYNIQAVFTNRDYEPYALERDQKIDN 116
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREK---------VKGVEIRKTIE 292
++ +GI F ++ D++ E + F+ K + EI T E
Sbjct: 117 ILQQKGIGFYDFKDHVIFEKDEILTGGNEPYKVFTPFKNKWLEKLESGHIHPYEIHLTAE 176
Query: 293 ALDQLKGLPSRGDVEPGDIPSLLDLGLSQS 322
Q EP +IP+L ++G +S
Sbjct: 177 NFFQF---------EP-EIPTLDEIGFRES 196
>gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora]
Length = 552
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 90/337 (26%), Positives = 136/337 (40%), Gaps = 48/337 (14%)
Query: 115 DPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG 174
+ + G + +I W R DLR+HDN SL A S +V +Y D + + G +
Sbjct: 18 EKSQGKLKAKHAIHWVRKDLRLHDNPSLLEAVKGSDTVRIIYVLDTKVDHATGIGLN--- 74
Query: 175 PYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVK 234
FL++S+ D+ +L+ S L V G+P V L + + + +
Sbjct: 75 --LWRFLLQSLEDVDDSLRKLNSRLFVVRGQPADVFPRLFREWKTSFLTFEEDSEPFGRE 132
Query: 235 SEEKIEAAMKDEGIEVKYFWGSTLYHLD-DLPFKLGEMPTNYGGFREKVKGV-EIRKTIE 292
+ I ++ G+EV TLY + G P Y F V+ + +
Sbjct: 133 KDAAIRLLAQESGVEVAVGRSHTLYDPQLIIKHNSGTAPLTYKKFLAIVRSLGNPQHPCA 192
Query: 293 ALD--QLKGLP---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEAL 347
LD L G S E +PSL +LGL + +++WH GGETEAL
Sbjct: 193 TLDVHLLGGCSTPVSEDHEEKFGVPSLKELGLDVAKLSTEIWH----------GGETEAL 242
Query: 348 QRL------KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 401
RL K + A ++ PK + S G +SP+L GCLSPR + L
Sbjct: 243 IRLDRHLERKAWIASFEK--PKVTPNSLFPSPTG------LSPYLRFGCLSPRLFYHRLS 294
Query: 402 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ + K D G +LLWR+FF
Sbjct: 295 ELYRKV----KCKDPPISLYG--------QLLWREFF 319
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 136/323 (42%), Gaps = 47/323 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A ++V V+ V+C D RD D P R +++ +
Sbjct: 6 LFWHRRDLRLTDNLGLAAAKEQTVKVVGVFCLD-RDILTR----DDIAPARVKYMMGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L ++ GS L++ G P V+ +LA + A AVY + +V K + ++ A++D+
Sbjct: 61 ELSQSYGQIGSQLLITQGTPSQVIPQLASTLSAKAVYWNLDVEPYARKRDREVTIALQDK 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIE-ALDQLKGLPSR-- 303
I V+ FW L H E P + ++ + TI + L+GL +
Sbjct: 121 DITVQNFWDQLL-HPPGAVLTQSEQPYKVYTPFWRNWSLQDKPTISPQIKNLQGLTATEL 179
Query: 304 ---GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF--AAEYQ 358
+ ++P+ DLG S + + GET A RL++F +A YQ
Sbjct: 180 ATVDQIYVSELPTAEDLGYSWETPL------------LLAPGETAAQARLEEFSHSAIYQ 227
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
+ S+ A L G +S R+++ T++ A
Sbjct: 228 YDEQRNFPFNQGTSLLSAA--------LKFGVISLRAIWQ------TTVEALEN-----C 268
Query: 419 GSSGAGSNWLMF--ELLWRDFFR 439
S A N + + EL WR+F++
Sbjct: 269 RSEEARVNVITWQKELAWREFYQ 291
>gi|312194378|ref|YP_004014439.1| deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
gi|311225714|gb|ADP78569.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EuI1c]
Length = 447
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/313 (24%), Positives = 133/313 (42%), Gaps = 53/313 (16%)
Query: 130 FRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLR 189
F DLRVHDN L A +P++ D + SGF TG R FL ES++DL
Sbjct: 7 FTRDLRVHDNPMLTAAALAGEHTVPLFVLDA---AMARSGF-ATGA-RERFLAESLADLD 61
Query: 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249
++L+ G LVVR G P + +A + A V+ + S + E + +A+ + G
Sbjct: 62 RSLRELGGRLVVRAGDPVEQVCRVADEVDAGTVHLAADCSGYAQRREAALRSALAERG-- 119
Query: 250 VKYFWGSTLYHLDDLPFKLGEMPTN----YGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
+ H+ P ++ + +G + + + R+ I +L+ LP+
Sbjct: 120 -RTLHCHDEAHVVVAPGRVTPAGRDHYAVFGAYHRRWEAAGWRRVIAPPARLR-LPA--- 174
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGN 365
V+PG +P + GG+ A GGET +R +++ E
Sbjct: 175 VDPGALPPIGGPA------------GGESAGGGFHGGETVGRRRAEEWLREGVEV----- 217
Query: 366 KDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGS 425
D D + A+ + ++SP+L +GCLS ++ A++ G++
Sbjct: 218 YDERRDQL-AADATSRLSPYLHLGCLS-------------ALELATQAGTGDAARD---- 259
Query: 426 NWLMFELLWRDFF 438
+ +L WRDFF
Sbjct: 260 --FVRQLAWRDFF 270
>gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357828|ref|ZP_12960518.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689067|gb|EHI53615.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 473
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 136/324 (41%), Gaps = 46/324 (14%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+ DN +L A E+ V ++ P + + K P R FL+ V
Sbjct: 3 LVWFRNDLRLADNPALRHACAEAGEVAALFVISPTQWQQH-----KMAPIRQQFLLAQVD 57
Query: 187 DLRKNLQARGSDL-VVRV---GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L K L A G L ++RV + T L L++ +G +YA++ + DE + + + A
Sbjct: 58 ELGKALAALGIPLHLLRVETFAEMPTALASLSRELGVSQLYANQAIEIDEQRRDLAVSAM 117
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPS 302
+ ++ + +F G + + GEM + F R ++AL++ +
Sbjct: 118 LAEQEVSCHWFNGCCVLPPGRVLTGSGEMFKVFTPFS--------RAWLKALEEDGFVIH 169
Query: 303 RG---DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
R EP L + S A G GE EA +RL F
Sbjct: 170 RAPAPRAEPLPWQPLTEREWSYGAL------GEVTPDPRWPVGEAEAQRRLHAF-----L 218
Query: 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESG 419
+P + + D A S +SP+LA G +SPR L++ G
Sbjct: 219 EPAVLDYEETRDFPAQAGTSI-LSPYLAAGIISPRQCVGVLQQRL-----------GHRP 266
Query: 420 SSGA--GSNWLMFELLWRDFFRFI 441
S A G WL EL+WR+F+R +
Sbjct: 267 QSKAQPGFVWLN-ELVWREFYRHL 289
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,505,757,044
Number of Sequences: 23463169
Number of extensions: 318265735
Number of successful extensions: 667912
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 2167
Number of HSP's that attempted gapping in prelim test: 660672
Number of HSP's gapped (non-prelim): 4379
length of query: 465
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 319
effective length of database: 8,933,572,693
effective search space: 2849809689067
effective search space used: 2849809689067
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 79 (35.0 bits)