BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012338
(465 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LB72|PHR2_ARATH Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2
SV=2
Length = 447
Score = 600 bits (1548), Expect = e-171, Method: Compositional matrix adjust.
Identities = 321/461 (69%), Positives = 380/461 (82%), Gaps = 20/461 (4%)
Query: 5 KQNLENPENHSNEEQNPLATIPSQSPFATLSLSFSLPQVLPANTFFIQPKISTLFSHQPN 64
++NL NPE S EEQNPLA S P A+LSL+ + P++T F++ LF+H PN
Sbjct: 7 EENL-NPETKSAEEQNPLAIFHSSLPIASLSLT-----LFPSSTQFLK-----LFAHHPN 55
Query: 65 KVKVPTQASTLTHISLSASSTLSPSKISFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRR 124
KVK+PTQAS+LTH+SLS+ S S+ISFKST++ANPLQSPLS+ P RP+DP++ AA+RR
Sbjct: 56 KVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRR 115
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
A++VWFRNDLRVHDNE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIES
Sbjct: 116 AAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIES 175
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
VS+LRKNLQARGS+LVVRVGKPE VLVELAK IGADAVYAHREVSHDEVK+E KIE AMK
Sbjct: 176 VSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMK 235
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRG 304
+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV+ +EIRKTI ALDQLK LPSRG
Sbjct: 236 EEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKTIAALDQLKSLPSRG 295
Query: 305 DVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364
DVE GDIPSLLDLG+S + SQ GKP +M GGETEAL RLK FAA+ QA+ KG
Sbjct: 296 DVELGDIPSLLDLGISPTPRTSQ---EGKP---TMVGGETEALTRLKSFAADCQARLSKG 349
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
N+ G ++S++GANFSCKISPWLAMG +SPRSMFDELKKT ++ + ++ +G + G
Sbjct: 350 NQKGGNNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNGPGDT---G 406
Query: 425 SNWLMFELLWRDFFRFITKKYSSAKKVVEAVPATACTGALA 465
NWLM+ELLWRDFFRFITKKYSSAK VEA PATACTGA A
Sbjct: 407 LNWLMYELLWRDFFRFITKKYSSAKTQVEAGPATACTGAFA 447
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 229 bits (585), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 191/323 (59%), Gaps = 26/323 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
+ +VW+RNDLRVHD+E L +A +++ V+ +YCFDPR +GK+ GF+KTGP+RA FL+E
Sbjct: 4 KTVLVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLE 63
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
SV+DLR++L+ GSDL+VR G PE V+ L + AV+ H EV+ +E+ E ++AA+
Sbjct: 64 SVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAAL 123
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKGLPS 302
+ V+ FWG+TL H DDLPF + +P + FR++V + I + A +L
Sbjct: 124 APLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPPLPAPAKLP---P 180
Query: 303 RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362
V+PG+IP L DLGL + A KGGET L RL+++ +Q
Sbjct: 181 LPAVDPGEIPQLADLGLESPVTDER-------AVLQFKGGETSGLARLEEYF--WQKSLL 231
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K K + + GA++S K S WLA+GCLS R + ++++ T ND
Sbjct: 232 KSYKQ-TRNGMLGADYSSKFSAWLALGCLSARYIHEQVQTYETKRIK----ND------- 279
Query: 423 AGSNWLMFELLWRDFFRFITKKY 445
+ WL+FELLWRD+FRFI K+
Sbjct: 280 -STYWLIFELLWRDYFRFIAAKH 301
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 228 bits (582), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 131/329 (39%), Positives = 188/329 (57%), Gaps = 30/329 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE + A + ++P+YCFDPR Y G F KTGP+R FL+
Sbjct: 5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLL 64
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEA 241
+SV DLR L+ GS L+VR GKPE V+ EL K +G+ + A H EV+ +E EEK++
Sbjct: 65 DSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKE 124
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPF-KLGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
+ V+ FWGSTLYH DDLPF +G +P Y FR+ V+ +R + +Q+K
Sbjct: 125 ICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTPEQVKS 184
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQA 359
PS +E G IP+ LG ++ + +A +GGETEAL RLK + + A
Sbjct: 185 PPS--GLEEGPIPTFDSLGQTEPLDDCR-------SAFPCRGGETEALARLKHYFWDTNA 235
Query: 360 QPP-KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G +FS K SPWLA+GC+SPR +++++KK +A
Sbjct: 236 VATYKETRNG----MIGVDFSTKFSPWLALGCISPRYIYEQIKKYEVERTA--------- 282
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W++FELLWRD+F+F+ KY +
Sbjct: 283 ---NQSTYWVIFELLWRDYFKFVALKYGN 308
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 222 bits (566), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 189/324 (58%), Gaps = 30/324 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFRNDLR+HD+E L+ A +++ VYC+DPR + ++ GF KTGP+R++FL +SV
Sbjct: 9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQ 68
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L ++LQ G+ L+V G PE V+ ++AK I A +Y HREV+ +E+ E + +
Sbjct: 69 NLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTIL 128
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV--KGVEIRKTIEALDQLKGLPSRG 304
GIE K +WGSTL H +DLPF + ++P + FR+ + K + IR A QL LPS
Sbjct: 129 GIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAPSQL--LPS-- 184
Query: 305 DVEPGDIPSL-LDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPK 363
P++ L+L Q+ + + + +GGET L RL+ + + K
Sbjct: 185 -------PNIKLELTAPPPEFFPQI-NFDHRSVLAFQGGETAGLARLQDYF--WHGDRLK 234
Query: 364 GNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA 423
K+ + + GA++S K SPWLA+GCLSPR ++ E+K+ + S
Sbjct: 235 DYKE-TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYE------------QERVSND 281
Query: 424 GSNWLMFELLWRDFFRFITKKYSS 447
++WL+FELLWRDFFRF+ +KY +
Sbjct: 282 STHWLIFELLWRDFFRFVAQKYGN 305
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 221 bits (563), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 188/327 (57%), Gaps = 30/327 (9%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLI 182
R I RNDLR+HDNE L+ A+ + ++P+YCFDPR Y G F KTGP+R FL+
Sbjct: 6 RVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLL 65
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEA 241
ESV DLR L+ +GS+L++R GKPE V+ +L K +G AV H E + +E E ++
Sbjct: 66 ESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQ 125
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGV-EIRKTIEALDQLKG 299
A GI+ + FWGSTLYH +DLPF+ + +P Y FR+ V+ ++R T + D+LK
Sbjct: 126 ACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTFQMPDKLKP 185
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ- 358
LPS +E G +PS D Q ++ A GGE++ALQRL+ + E
Sbjct: 186 LPS--GLEEGSVPSHED--FDQQDPLTD-----PRTAFPCSGGESQALQRLEHYFWETNL 236
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGES 418
K ++G + G ++S K +PWLA+GC+SPR +++++ K +A
Sbjct: 237 VASYKDTRNG----LIGLDYSTKFAPWLALGCVSPRYIYEQIGKYEKERTA--------- 283
Query: 419 GSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W++FELLWRD+FRF+ KY
Sbjct: 284 ---NQSTYWVIFELLWRDYFRFVALKY 307
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/324 (37%), Positives = 179/324 (55%), Gaps = 30/324 (9%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+I+WFRNDLRV DN++L A + S ++LPVYC DPR + + F KTG R FL+E
Sbjct: 85 VTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLME 144
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
+ DLRKNL RG +L++R GKPE +L LAK GA V+AH+E +EV E + +
Sbjct: 145 CLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGL 204
Query: 244 KDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEALDQLKGL 300
K G +++ WGST+YH DDLPF + ++P Y FR+ V+ IR + L
Sbjct: 205 KRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEAKCSIRSSTRIPLSLGPT 264
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
PS D GD+P+L LG+ + GGE+ + R+ F ++
Sbjct: 265 PSVDDW--GDVPTLEKLGVEPQEVTRGM---------RFVGGESAGVGRV--FEYFWKKD 311
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K K+ + + G ++S K SPWLA GC+SPR +++E+++ A +
Sbjct: 312 LLKVYKE-TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNS-------- 362
Query: 421 SGAGSNWLMFELLWRDFFRFITKK 444
+ W++FEL+WRD+FRF++ K
Sbjct: 363 ----TYWVLFELIWRDYFRFLSIK 382
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/356 (36%), Positives = 189/356 (53%), Gaps = 68/356 (19%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLI 182
+IVWFRNDLRV DNE++ A S +VLPVYC DPR S+ GF KTG RA FLI
Sbjct: 85 VAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLI 144
Query: 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
E + DL++NL +G DL++R GKPE +L +AKA+ A VYAH+E +E+ E +
Sbjct: 145 ECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKG 204
Query: 243 MKDEGI--------------EVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIR 288
++ I +++ WG+TLYH+DDLPF + +P Y FR K VE +
Sbjct: 205 LEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFR---KAVESK 261
Query: 289 KTIE---------------ALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGK 333
++ LD++ G G +P+L LGLS + A +
Sbjct: 262 SSVRNCSKLPPSLGPPPGSGLDEIGGW--------GTVPTLESLGLSMTKAEKGM----- 308
Query: 334 PAANSMKGGETEALQRLKK-FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 392
GGE+ AL R+ + F + Q + K ++G + G ++S K SPWLA G LS
Sbjct: 309 ----HFVGGESAALGRVHEYFWKKDQLKVYKETRNG----MLGPDYSTKFSPWLASGSLS 360
Query: 393 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSSA 448
PR + +E+K+ A ND + W++FEL+WRD+FRFI+ KY ++
Sbjct: 361 PRYICEEVKRYEKQRIA----ND--------STYWVLFELIWRDYFRFISAKYGNS 404
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/338 (36%), Positives = 185/338 (54%), Gaps = 44/338 (13%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIE 183
+IVWFRNDLRV DNE+L A S ++LPVYC DPR +G + G KTG RA F+IE
Sbjct: 79 VAIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIE 138
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++DL++NL RG DL+++ GKPE ++ LAKA A VYAH+E +EVK E+ + +
Sbjct: 139 CLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNL 198
Query: 244 K------------DEG----IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK-GVE 286
+ D G +++ WGST+YH+DDLPF +P Y FR+ V+ +
Sbjct: 199 QKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSK 258
Query: 287 IRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEA 346
+R + P GD G +P + +LGL Q + + GGE+ A
Sbjct: 259 VRNCTKLPTSFGPPPEVGDW--GHVPQVSELGLQQEKVSKGM---------NFVGGESAA 307
Query: 347 LQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS 406
L R+ + ++ K K+ + + GA++S K SPWLA G LSPR +++E+K+
Sbjct: 308 LGRVHDYF--WKKDLLKVYKE-TRNGMLGADYSTKFSPWLASGSLSPRFIYEEVKRYE-- 362
Query: 407 ISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKK 444
+ S + W++FEL+WRD+FRF++ K
Sbjct: 363 ----------KERLSNDSTYWVLFELIWRDYFRFLSIK 390
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 179/326 (54%), Gaps = 29/326 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFRNDLR D+E A+ V+C DPR + + GF +TGP+RA FLIE++
Sbjct: 4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENL 62
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR L++ G +L+VRVG+PETVL L ++ DAV+ H E +E + E ++
Sbjct: 63 TDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCDQ 122
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV-KGVEIRKTIEALDQLKG-LPSR 303
GI +G TL H D+LPF++ + P + FR+++ K E R +E ++ G LP
Sbjct: 123 HGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIEKQCEARSPLEEPIRIHGTLPE- 181
Query: 304 GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA-AEYQAQPP 362
+V GDIP+L LGLS + N GG+ A QR++++ E + +
Sbjct: 182 -EVNAGDIPTLESLGLSTPPLDDR-------CLNQFTGGQNAAQQRMEEYIWNEDRLRVY 233
Query: 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSG 422
K ++G + N S K SPWLA GCLSPR + D +++ E
Sbjct: 234 KETRNG----MLHPNDSSKFSPWLAQGCLSPRMIADHVRRYE------------EERVKN 277
Query: 423 AGSNWLMFELLWRDFFRFITKKYSSA 448
+ W++FELLWRD+FR+I++K+ +
Sbjct: 278 KSTYWMIFELLWRDYFRWISRKHGAT 303
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 180/323 (55%), Gaps = 26/323 (8%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++VWFR+DLRV DN +L A + +V+PVY FDP Y +S G KTG +RA F ++V
Sbjct: 4 AVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAV 63
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+DLR +L+ RG DL+VR G+P TV+ ELA+ GADAVYA + + +E + + +A+ D
Sbjct: 64 ADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASALDD 123
Query: 246 EGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGD 305
GI ++ W TLYH DDLP ++ + +R++ + + + + +P+
Sbjct: 124 AGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETEAAATVRDPRSAPET--VPTPDG 181
Query: 306 VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE-YQAQPPKG 364
+ PG +P++ LG+S+ + A +GGE+ +R++ + E + K
Sbjct: 182 LTPGPVPTVESLGVSEPPTDDR-------AVLEFEGGESAGKRRVESYIWEGDHLREYKT 234
Query: 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAG 424
++G + GA++S K SPWLA GCLSPR + E+++ A
Sbjct: 235 TRNG----LLGADYSSKFSPWLAAGCLSPRWLHREVERYEDERVANED------------ 278
Query: 425 SNWLMFELLWRDFFRFITKKYSS 447
+ WL+FEL WRDFF+F +KY +
Sbjct: 279 TYWLVFELAWRDFFQFQFEKYGA 301
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 171/351 (48%), Gaps = 43/351 (12%)
Query: 123 RRASIVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
R ++WFRNDLR+ DN + A + V V+PVY FD + S G + G R
Sbjct: 3 RTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGR 62
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--AVYAHREVSHDEVKS 235
F +E V DL+ +L+A GSDL+VR GK V+ EL D + EV+ +E +
Sbjct: 63 GKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEM 122
Query: 236 EEKIEAAMKDEG------IEVKYFWGSTLYHLDDLPFK----LGEMPTNYGGFREKVKG- 284
+ +E A ++ ++ WGSTLYH+DD+PF L ++P + FR KV+
Sbjct: 123 DVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESK 182
Query: 285 VEIRKTIEA--LDQLKGLPSRGDVEPGD-IPSLLDLGLSQSAAMSQVWHGGKPAAN---- 337
++R I A ++L +P+ VE + +P DL + S K +
Sbjct: 183 CKVRDVIPAPTANELGHVPA--SVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDERSV 240
Query: 338 -SMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSM 396
KGGE+ AL R+K + E + + G ++S K++PWLA+GC+SPR +
Sbjct: 241 LDFKGGESNALARVKYYLWESDRLATYFE---TRNGMLGGDYSTKLAPWLALGCVSPRHV 297
Query: 397 FDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKYSS 447
E+++ + + W++FEL+WRDFF+F K+ +
Sbjct: 298 VSEIRRYES------------ERVENKSTYWVIFELIWRDFFKFFALKHGN 336
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/325 (28%), Positives = 149/325 (45%), Gaps = 41/325 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
R + FRNDLRV DN +L A S +++ +CF+P G G +R +FL +
Sbjct: 15 RLGLFVFRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQ 74
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
S+ LR L+ RG L+V G + +L EL DA++ + + E+++ +
Sbjct: 75 SLKQLRTELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQHQGY-----YERLQLGL 129
Query: 244 KDEGIEVKYFW---GSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ F +TL+ +LPF+L ++P + FR+KV+ + +++ ++ L L
Sbjct: 130 LQQRFPFLPFHETPNNTLFSEQELPFELADLPETFSQFRKKVEPLSRNFSVQPVNALPSL 189
Query: 301 PSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
P + PG L+ + A++ +GGE AL L + + A
Sbjct: 190 P-KNISYPGFKAETLN----------------ELASDDFEGGERAALTHLTSYFSGESAG 232
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++ D + S K SPWLA GCLS R + L+ T GE+ S
Sbjct: 233 TYKQTRNALDD----FSSSTKFSPWLAQGCLSVRQIMAALRAYETEF--------GENES 280
Query: 421 SGAGSNWLMFELLWRDFFRFITKKY 445
S W+ FELLWR++F + K+
Sbjct: 281 ----SYWISFELLWREYFFWYALKH 301
>sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B22I21.260 PE=3 SV=1
Length = 745
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 161/381 (42%), Gaps = 60/381 (15%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVS-----VLPVYCF----------------DPRD 162
+ I R +LR+ DN + +N +LPVY F +P
Sbjct: 5 KVVIYAMRRELRLSDNPIFHHLSNPESKHGFSHLLPVYVFPAQQIDLSGFVPKGSENPHP 64
Query: 163 YGKSS-SGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVEL-----AKA 216
KS+ G+ + GPYRA FL ESV DL+ +LQ+ GSDL+VR G + V+ L AK
Sbjct: 65 APKSAVGGYARCGPYRAKFLAESVWDLKTSLQSIGSDLLVRAGPYKDVIQSLVEGLKAKE 124
Query: 217 IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLP---FKLGEMPT 273
AV+ +E E+ + + GI+ K W Y + D L ++P
Sbjct: 125 CQVGAVWMTSHEGSEEKSEEKTVASFCAKSGIDFK-LWDDEKYLIHDRDTGITHLNDLPD 183
Query: 274 NYGGFREKVKGV--EIRKTIEALDQLKGLPSRGDVE--PGDIPSLLDLGLSQSAAMSQVW 329
+ +R++++ + + RKT+ ++ LP+ D++ P P G + + V
Sbjct: 184 VFTTYRKQIEPLREKARKTLPVPEK-GALPAYPDIDMIPSQQPPFNIPGTCEELVDAVV- 241
Query: 330 HGGKPAANSMK----------------GGETEALQRLKKFAAEYQAQPPKGNKDGNHDSI 373
+P N +K GGET A +R+ + K +++G +
Sbjct: 242 ---RPVKNFLKDLPDFPEKAESSHPFRGGETSAHKRIDHLVLSGGMKSYKDSRNG----L 294
Query: 374 YGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 433
G +FS K+S +LA GC++ R + L K DG G+ + ELL
Sbjct: 295 LGPDFSTKLSAYLAQGCVTARQIHHALVAYEDGTGTKYKGADGFGEGDNQGTETVRMELL 354
Query: 434 WRDFFRFITKKYSSAKKVVEA 454
WRD+ R +KY VE
Sbjct: 355 WRDYMRLCHQKYGDKLFRVEG 375
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 153/338 (45%), Gaps = 40/338 (11%)
Query: 114 LDPNNGAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPR----DYGKSSSG 169
L+P A S++WFR LRVHDN +L A+ S + PV+ DP D S G
Sbjct: 14 LNPITSMATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPG 73
Query: 170 FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVS 229
+ G R FL+ES+ DL +L+ GS L+V G+P VLV + + +
Sbjct: 74 SSRAGVNRIRFLLESLKDLDSSLKKLGSRLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTD 133
Query: 230 HDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIR 288
+ K++ G+EV TL++ + K G+ P +Y F KV G
Sbjct: 134 PYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFL-KVAGEPSC 192
Query: 289 KTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAAN--SMKGGETEA 346
E + LP GD+ +LG+S+ ++ ++ + A+ +GGE+EA
Sbjct: 193 AKSELVMSYSSLPPIGDIG--------NLGISEVPSLEELGYKDDEQADWTPFRGGESEA 244
Query: 347 LQRLKK------FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDEL 400
L+RL K + A ++ PKG+ S + + +SP+L GCLS R + L
Sbjct: 245 LKRLTKSISDKAWVANFEK--PKGDP-----SAFLKPATTVMSPYLKFGCLSSRYFYQCL 297
Query: 401 KKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ + D + +S S L+ +LLWR+FF
Sbjct: 298 QNI---------YKDVKKHTSPPVS--LLGQLLWREFF 324
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 141/327 (43%), Gaps = 40/327 (12%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCF-DPRDYGKSSSGFDKTGPYRASFL 181
++ + WF NDLRV+DN L A+ + ++ +YC+ + + + G + FL
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYPSITPFLARYAQQTQWGEAKKRFL 62
Query: 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA 241
++++DL +L G L V P L L + +Y DE ++ +I
Sbjct: 63 NQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARIHQ 122
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
I + +L LPF L +P+ + FR++V+ + + + G P
Sbjct: 123 DFSSVHIHQQAL--HSLLSEPQLPFALEALPSTFTQFRKQVETISLSAPM-------GYP 173
Query: 302 S-RGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQ 360
+E G L+D+ +P ++ GGE L + + +
Sbjct: 174 HVLPPIEQGWQLPLMDI-------------VTEPNHSAFVGGEQAGLTHCQNYFSSLLPS 220
Query: 361 PPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGS 420
K ++G + G ++S K SPWLA+G +SP++++ L++ A ND
Sbjct: 221 RYKETRNG----LDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGA----ND----- 267
Query: 421 SGAGSNWLMFELLWRDFFRFITKKYSS 447
+ W+ FELLWR++F + ++Y +
Sbjct: 268 ---STYWIFFELLWREYFYWYARRYGA 291
>sp|Q4I1Q6|CRYD_GIBZE Putative cryptochrome DASH OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_08852 PE=3
SV=1
Length = 678
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 143/362 (39%), Gaps = 64/362 (17%)
Query: 127 IVWFRNDLRVHDN---ESLNTANNESVSVLPVYCFDPRD----------------YGKSS 167
+ R DLR DN L T+++ +LP+Y P KS
Sbjct: 8 VYLLRRDLRATDNPILHHLATSDHGFTHLLPIYILPPHQIETSGFVVEGQKSPYPLAKSQ 67
Query: 168 SG-FDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA-----DA 221
G F + GP RA F E + D++KN + GS +++R+GK + VL L K++ D
Sbjct: 68 VGRFWRCGPLRAKFQAECIWDVKKNFENIGSGMLIRIGKFDDVLKHLIKSLNEDHQSIDT 127
Query: 222 VYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD--------------LPFK 267
V+ E S +E+ + + + EGI K W Y +D+ +
Sbjct: 128 VWMTEEPSKEELDDQTAVASVCSKEGIGFK-LWHDEKYFIDEKTQEPLRERPRPPLPRPQ 186
Query: 268 LGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV--EPGDIPSLLDLGLSQSAAM 325
G +P+ + I + ++L P + + +P P
Sbjct: 187 AGSLPSFPSWIPPQQAPFRIPDDYDEFERLLLEPVKAPIISDPPQFPE------------ 234
Query: 326 SQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPW 385
G +A+ KGGET A RL + ++G + G +S K+S +
Sbjct: 235 ------GAKSAHPFKGGETPAWDRLYHLIKSGAMTTYQETRNG----LLGTEYSTKLSAF 284
Query: 386 LAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKKY 445
LAMG ++ RS+ EL K + G G+ + FELLWRD+ R T K+
Sbjct: 285 LAMGTITARSIHAELVKFEDGSEESYSRGFGFGKGENEGTRAVRFELLWRDYMRLCTFKF 344
Query: 446 SS 447
+
Sbjct: 345 RT 346
>sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=cry PE=3 SV=1
Length = 445
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 140/328 (42%), Gaps = 46/328 (14%)
Query: 123 RRASIVWFRNDLRVHDNESLNTANNESVSVLPVYC---FDPRDYGKSSSGFDKTGPYRAS 179
++ + WF DLR+HDN L A++ ++ +YC P + + G R
Sbjct: 3 KKIGLYWFTFDLRLHDNSLLVDASSFLDELVCLYCRPSVTPFLHHFAQEV--TLGRARQK 60
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
F+ S+ +L L G L P L + + +Y+ DE + I
Sbjct: 61 FIDASLCELNDALGQLGQRLWTLDLPPYQALKYAIQYLSVTHLYSDAMAGSDE----QSI 116
Query: 240 EAAMKDEGIEVKYFWGS--TLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
++DE + S +L+ LPF L ++P + FR+ V+G++I I+A +L
Sbjct: 117 LHKLQDEYPHLVIVQHSVRSLFDESKLPFTLPDLPETFTQFRKCVEGIDIAHPIDAPSRL 176
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+P + +P+L +SA S GGE L +++
Sbjct: 177 PPMP-----KGAQLPTLSSFYFDESALFS--------------GGEWSGLAHCRRYFFSG 217
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
A K ++G + G +S K SPWLA+GC+SPR + LK+ + A ND
Sbjct: 218 LASSYKETRNG----LDGMAYSTKFSPWLALGCVSPRMIHAMLKQYEQTQGA----ND-- 267
Query: 418 SGSSGAGSNWLMFELLWRDFFRFITKKY 445
+ W+ FELLWR++F + + Y
Sbjct: 268 ------STYWIYFELLWREYFYWYARCY 289
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 136/327 (41%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 23 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 77
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 78 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 137
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRK------TIEALDQL 297
+ G+EV TLY LD + G+ P Y F+ + +E+ K T + ++
Sbjct: 138 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRMELPKKPVGLVTSQQMESC 197
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
+ E +PSL +LG VW +GGETEAL RL K
Sbjct: 198 RAEIQENHDETYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 247
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 248 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 295
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 296 KRNSTPPLS-------LFGQLLWREFF 315
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 138/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 22 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 76
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 136
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K + A+
Sbjct: 137 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPVGAVSSQHMENC 196
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALVRLDKHLERK 246
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 247 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYRKV---- 294
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 295 KRNSTPPLS-------LFGQLLWREFF 314
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 140/326 (42%), Gaps = 47/326 (14%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
S+ WFR LR+HDN +L A + S+ +Y DP S+ G + R FL++S+
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVGIN-----RWRFLLQSL 68
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
DL +L+ S L V G+P V L K G + + + + I K+
Sbjct: 69 EDLDNSLRKLNSRLFVVRGQPTDVFPRLFKEWGVTRLAFEYDSEPFGKERDAAIIKLAKE 128
Query: 246 EGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEI-RKTIEALDQLKGLPSR 303
G+EV TLY+LD + + P Y F+ + +E+ +K + ++ + +
Sbjct: 129 AGVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRMELPKKPVSSIVSQQMETCK 188
Query: 304 GDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK------ 352
D++ +PSL +LG VW +GGETEAL RL K
Sbjct: 189 VDIQENHDDVYGVPSLEELGFPTDGLAPAVW----------QGGETEALARLDKHLERKA 238
Query: 353 FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ A Y+ P+ N + S G +SP+L GCLS R + L + + K
Sbjct: 239 WVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWELYKKV----K 286
Query: 413 WNDGESGSSGAGSNWLMFELLWRDFF 438
N S L +LLWR+FF
Sbjct: 287 RNSTPPLS-------LYGQLLWREFF 305
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 145/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L+V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLLVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK-- 352
++ S E +PSL +LG S VW GGETEAL RL++
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 353 ----FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
+ A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERRAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 138/327 (42%), Gaps = 47/327 (14%)
Query: 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIES 184
+S+ WFR LR+HDN +L A + V VY DP SS G + R FL++S
Sbjct: 22 SSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGIN-----RWRFLLQS 76
Query: 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK 244
+ DL +L+ S L V G+P V L K G + + + + I K
Sbjct: 77 LEDLDTSLRKLNSRLFVVRGQPADVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAK 136
Query: 245 DEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEI-RKTIEALDQLKGLPS 302
+ G+EV TLY LD + G+ P Y F+ + +E+ +K A+ +
Sbjct: 137 EAGVEVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRMELPKKPAVAVSSQQMESC 196
Query: 303 RGDVEPGD-----IPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKK----- 352
R +++ +PSL +LG VW +GGETEAL RL K
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVW----------QGGETEALARLDKHLERK 246
Query: 353 -FAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAAS 411
+ A Y+ P+ N + S G +SP+L GCLS R + L +
Sbjct: 247 AWVANYER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYYRLWDLYKKV---- 294
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 295 KRNSTPPLS-------LFGQLLWREFF 314
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKRNSSPPLS-------LYGQLLWREFF 296
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 141/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWSIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 QKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFR---EKVKGVEI---RKTIEAL 294
+ G+EV TLY LD + G+ P Y F+ K++ +EI T E +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKMEPLEIPVETITSEVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
++ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 EKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 141/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWNIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 KKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 GKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 140/328 (42%), Gaps = 51/328 (15%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + +V VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + A + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFK----EWNIAKLSIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ + +E + T E +
Sbjct: 116 LASEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRMEPLEMPVETITPEVM 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF- 353
+ E +PSL +LG S VW GGETEAL RL++
Sbjct: 176 KKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVW----------PGGETEALTRLERHL 225
Query: 354 ---AAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAA 410
A+ + P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKASVANFERPRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLYKK 275
Query: 411 SKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 276 VKKNSSPPLS-------LYGQLLWREFF 296
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 140/330 (42%), Gaps = 55/330 (16%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++ WFR LR+HDN +L + ++ VY DP G S+ G + R FL++ +
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGIN-----RWRFLLQCL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK- 244
DL NL+ S L V G+P V L K + + +D ++ +AA+K
Sbjct: 60 EDLDANLRKLNSRLFVIRGQPADVFPRLFKEWNITKL----SIEYDSEPFGKERDAAIKK 115
Query: 245 ---DEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYGGFREKVKGVEIRK------TIEAL 294
+ G+EV TLY LD + G+ P Y F+ V +E + T + +
Sbjct: 116 LATEAGVEVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVI 175
Query: 295 DQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL---- 350
+ S E +PSL +LG S VW GGETEAL RL
Sbjct: 176 GKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW----------PGGETEALTRLERHL 225
Query: 351 --KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSIS 408
K + A ++ P+ N + S G +SP+L GCLS R + +L T +
Sbjct: 226 ERKAWVANFER--PRMNANSLLASPTG------LSPYLRFGCLSCRLFYFKL----TDLY 273
Query: 409 AASKWNDGESGSSGAGSNWLMFELLWRDFF 438
K N S L +LLWR+FF
Sbjct: 274 KKVKKNSSPPLS-------LYGQLLWREFF 296
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 142/322 (44%), Gaps = 45/322 (13%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
++W R DLR++D+ +L A ++ ++ V+C D + + P R ++L+ +
Sbjct: 20 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQA-----EDMAPARVAYLLGCLQ 74
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L+ + Q GS+L+V P +L +LA +GA V + K + + A+++
Sbjct: 75 SLQDHYQRLGSELLVFQADPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRER 134
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL-PSRGD 305
G+ + W ++H ++ + G T Y F + + + L+GL P+ +
Sbjct: 135 GLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLPKTSPVPTPKDLQGLTPAEKE 194
Query: 306 ----VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAA----EY 357
+EP IP L DLG +W P + GE A QRL F A EY
Sbjct: 195 KLAPLEPLAIPQLADLGF--------IWDQPLP----LTPGEEAAEQRLDWFVAHGLEEY 242
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
Q ++ N ++ G + ++S L G +SPR+++ T++ A W
Sbjct: 243 Q-------QNRNFPALDG---TSQLSAALKFGVISPRTLWQ------TTLEA---WEQSR 283
Query: 418 SGSSGAGSNWLMFELLWRDFFR 439
S + A EL WR+F++
Sbjct: 284 SEEARASIETWQQELAWREFYQ 305
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A +S ++ ++C DP+ + P R ++L +
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSAD-----MAPARVAYLQGCLQ 60
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
+L++ Q GS L++ G P+ ++ +LA+ + A+AVY ++++ + ++ AA+K
Sbjct: 61 ELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTA 120
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI W L+ D + G + YG F + + + +L D+
Sbjct: 121 GIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPKPTPVATPTELV------DL 174
Query: 307 EPGDIPSLLDLGLSQSAAMSQV---WHGGKPAANSMKGGETEALQRLKKFA 354
P + ++ L LS+ + Q+ W GG P ++ GET A+ RL++F
Sbjct: 175 SPEQLTAIAPLLLSELPTLKQLGFDWDGGFP----VEPGETAAIARLQEFC 221
>sp|Q05380|YAT1_SYNP1 Uncharacterized 31.6 kDa protein in atpI 5'region OS=Synechococcus
sp. (strain PCC 6716) PE=4 SV=1
Length = 284
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 125/311 (40%), Gaps = 33/311 (10%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+ W R DLR+ DN L A + +V+ V+CFDP G D R ++L+ +
Sbjct: 7 LFWHRRDLRLADNLGLYAARQHTPTVVGVFCFDP----ALLQGQD-VAAVRVAYLLGCLQ 61
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDE 246
L++ Q RG L++ G P V+ E+A + A AV+ H +V + + + A + D
Sbjct: 62 ALKEAYQQRGGCLLMVQGDPRQVIPEVATTLKATAVHWHEDVEPYARERDRVVAATLNDL 121
Query: 247 GIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLPSRGDV 306
GI V W L+ + + G+ T Y F + + L + ++
Sbjct: 122 GIAVHRQWDQLLHPPSAVQTQQGQPYTVYTPFWRNWSALPKAAPVPPPPDFAPLEA-TEI 180
Query: 307 EPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNK 366
+PS DLG S + + GE A Q+L F+ +
Sbjct: 181 ASIPLPSTHDLGFDWSGEL------------ILAPGEAAAAQQLAHFSQH------AIYE 222
Query: 367 DGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426
G + G + +SP L G + R+++ A S +A E+ +S
Sbjct: 223 YGEQRNYPGRPGTALLSPALKFGVIGIRTVW------AASEAALEHARSDEARAS--IRT 274
Query: 427 WLMFELLWRDF 437
W EL WR+F
Sbjct: 275 WQQ-ELAWREF 284
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 141/337 (41%), Gaps = 42/337 (12%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNES----VSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
+R+A + WF+ DLR+HDN SL A+ ++ V ++ +Y P D P R
Sbjct: 133 VRQAVVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLR-----APIR 187
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPE----TVLVELAKAIGADAVYAHREVSHDEV 233
F++ ++ L+ +L+ G L V + T + EL K+ GA ++ E DE+
Sbjct: 188 VDFMLRTLEVLKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDEL 247
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG--------FREKVKGV 285
+ E K+ + EG + + ++ D G + + GG FR +K +
Sbjct: 248 RREAKL-VKLLAEGEKGEKMAADVVH--DTCVVMPGALQSGSGGQYAVYSPWFRAWIKHI 304
Query: 286 EIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSM-KGGET 344
E + + G G E + +L + ++ ++ K +S+ GE
Sbjct: 305 EENPECLEIYEKPGPNPPGTKEKHE--NLFACSIPEAPEGKRLRDDEKARYHSLWPAGEH 362
Query: 345 EALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTA 404
EAL+RL+KF E K +I + +S A G LS R+ +TA
Sbjct: 363 EALKRLEKFCDEAIG------KYAERRNIPAMQGTSNLSVHFASGTLSARTAI----RTA 412
Query: 405 TSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFI 441
+ K N G G W+ E+ WRDF++ +
Sbjct: 413 RDRNNTKKLNGGNEGI----QRWIS-EVAWRDFYKHV 444
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 148/354 (41%), Gaps = 50/354 (14%)
Query: 127 IVWFRNDLRVHDNESLN--TANNESVSVLPVYCFDPR----DYGKSSSGFDKTGPYRASF 180
+VWFR LRVHDN +L+ + + PV+ DPR D S G + G R F
Sbjct: 16 MVWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRF 75
Query: 181 LIESVSDLRKNLQARGSDLVVRV----GKPETVLVELAKAIGADAVYAHREVSHDEVKSE 236
L+ES+SDL L+ GS L++ G + K + + + +
Sbjct: 76 LLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARD 135
Query: 237 EKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTNYGGFREKVKGVEIRKTIEALD 295
+K+ GI+V TL+ ++ K G P Y F + G +E
Sbjct: 136 KKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSF-VAIAGEPPEPIMEEYS 194
Query: 296 QLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRL----- 350
+L + G+ E +P + +LG +SQ + +GGETEAL+R+
Sbjct: 195 ELPPVGDTGEYELLPVPRVEELGYGD---ISQ------EDLSLFRGGETEALKRMRESLH 245
Query: 351 -KKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISA 409
K++ A+++ PKG+ S + + +SP+L GCLS R + ++ S
Sbjct: 246 DKEWVAKFEK--PKGDP-----SAFLKPATTVLSPYLKFGCLSSRYFYHCIQDIYRSTKK 298
Query: 410 ASKWNDGESGSSGAGSNWLMFELLWRDFFR---FITKKYSSAK--KVVEAVPAT 458
+ +G +LLWRDFF F T + K K+ + +P T
Sbjct: 299 HTNPPVSLTG-----------QLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWT 341
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
++V F +DLR+HDN L A ++ V+P++ RD +GFD P +FL + +
Sbjct: 4 AVVLFTSDLRLHDNPVLRAALRDADEVVPLFV---RDDAVHRAGFDAPNPL--AFLADCL 58
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKD 245
+ L L+ RG L+VR G+ T + +A+ GA V+ VS + E++I A+ D
Sbjct: 59 AALDAGLRHRGGRLIVRRGEAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALAD 118
Query: 246 EGIEV 250
G E+
Sbjct: 119 SGREL 123
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 143/344 (41%), Gaps = 65/344 (18%)
Query: 126 SIVWFRNDLRVHDNESLNTA------NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
+I+WFR+ LR+HDN SL A +ESV + P++ FD G GF+ R
Sbjct: 5 NILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFN-----RMK 59
Query: 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKI 239
FL+ES++DL + L+ G L V G V+ L + + + ++ ++ I
Sbjct: 60 FLLESLADLDRQLREIGGQLYVFKGNAVNVMRRLFEELNIRKLCFEQDCEPIWKARDDAI 119
Query: 240 EAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIEALDQLK 298
+ + ++ TL+ + G + P Y F V I +
Sbjct: 120 QNLCRMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHTV------DIIGKPPRPV 173
Query: 299 GLPSRGDVEPGDIPSLL--DLGLSQSAAMS----QVWHGGKPAANSMK--GGETEALQ-- 348
PS VE G IPS+L ++ L Q +S +++ G P + + GGET+AL+
Sbjct: 174 AAPSFEFVEFGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGETKALECL 233
Query: 349 --RLKK----FAAEY----QAQPPKGNKDGNHDSIYGANFSC---KISPWLAMGCLSPRS 395
RLK+ F Y QA+P F +S L GCLS R
Sbjct: 234 GHRLKQEEEAFLGGYFLPTQAKP---------------EFLVPPTSMSAALRFGCLSVRM 278
Query: 396 MFDELKKTATSISAASKW-NDGESGSSGAGSNWLMFELLWRDFF 438
+ + + A +++ N G +G +L+WR++F
Sbjct: 279 FYWCVHDLYEKVQANNQYRNPGGQHITG--------QLIWREYF 314
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 142/308 (46%), Gaps = 39/308 (12%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FL 181
+ +IVWFR DLR+ DN +L A +E SV PV+ + P + G+ G RAS ++
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEG-SVFPVFIWCPEEEGQFYPG-------RASRWWM 56
Query: 182 IESVSDLRKNLQARGSDL-VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+S++ L ++L+A GSDL +++ + +++ + GA V + + + ++
Sbjct: 57 KQSLAHLSQSLKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVK 116
Query: 241 AAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGL 300
+ + GI V+ + G LY ++ + G+ T++ + +K + I +++ + +
Sbjct: 117 EKLVERGISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSI-ESVMLPPPWRLM 175
Query: 301 PSRGDVEPGDIPSLLDLGLSQ------SAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354
P E S+ +LGL +A +++ W G A+ + L +F
Sbjct: 176 PITAAAEAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKL----------LNEFI 225
Query: 355 AEYQAQPPKGNKD--GNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASK 412
+ K +K GN S+ +SP+L G +S R +F + + I A K
Sbjct: 226 EKQLIDYAKNSKKVVGNSTSL--------LSPYLHFGEISVRHVF-QCARMKQIIWARDK 276
Query: 413 WNDGESGS 420
++GE +
Sbjct: 277 NSEGEESA 284
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 144/341 (42%), Gaps = 58/341 (17%)
Query: 126 SIVWFRNDLRVHDNESLNTA--------NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
+I+WFR+ LR+HDN SL A ++E+V + P++ FD G G++ R
Sbjct: 5 NILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYN-----R 59
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
FL+ES++DL + + G L+V G TVL L + + + ++ + ++
Sbjct: 60 MKFLLESLADLDRQFRDLGGQLLVFRGDSVTVLRRLFEELNIKKLCYEQDCEPIWKERDD 119
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIEALDQ 296
+ + + TL++ ++ G++ P Y F V I +
Sbjct: 120 AVAKLCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHTV------NIIGDPPR 173
Query: 297 LKGLPSRGDVEPGDIPSLL--DLGLSQSAAMSQ---VWHGG--KPAANSMKGGETEALQ- 348
G P+ VE G +P+LL +L L Q + + G + A GGET AL+
Sbjct: 174 PVGAPNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYDGNARIAFQKWIGGETRALEA 233
Query: 349 ---RLKK----FAAEY----QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMF 397
RLK+ F Y QA+P I G S +S L GCLS R +
Sbjct: 234 LGARLKQEEEAFREGYYLPTQAKP----------EILGPATS--MSAALRFGCLSVRMFY 281
Query: 398 DELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
+ + + S++ G + + +L+WR++F
Sbjct: 282 WCVHDLFAKVQSNSQFK-------YPGGHHITGQLIWREYF 315
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/346 (24%), Positives = 143/346 (41%), Gaps = 57/346 (16%)
Query: 121 AIRRASIVWFRNDLRVHDNESLNTA---NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
A R A+++WFR+ LR+HDN +L A ++ ++++PV+ FD G + G++ R
Sbjct: 2 ATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYN-----R 56
Query: 178 ASFLIESVSDLRKNLQA----RGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEV 233
FL++S+ D+ LQA RG L+V G+P + L + + + ++
Sbjct: 57 MRFLLDSLQDIDDQLQAATDGRGR-LLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWN 115
Query: 234 KSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVKGVEIRKTIE 292
+ +E I + ++ I+ TL+ + G + P Y F V
Sbjct: 116 ERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTV---------- 165
Query: 293 ALDQLKGLPSR--GDVEPGDIPSL-LDLGLSQSAAMSQVW-----------HGGKPAANS 338
Q+ GLP R D D + LD +S + + + G A +
Sbjct: 166 ---QIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKIN 222
Query: 339 MKGGETEAL----QRLK--KFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLS 392
+GGET+AL +RLK + A E P HDS +S L GCLS
Sbjct: 223 WRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDS------PKSMSAHLRFGCLS 276
Query: 393 PRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
R + + ++ + G G + +L+WR++F
Sbjct: 277 VRRFYWSVHDLFKNVQLRA----CVRGVQMTGGAHITGQLIWREYF 318
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 139/336 (41%), Gaps = 41/336 (12%)
Query: 123 RRASIVWFRNDLRVHDNESLNTA---NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS 179
R A+++WFR+ LR+HDN +L A ++ + ++PV+ FD G S G++ R
Sbjct: 4 RGANVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYN-----RMR 58
Query: 180 FLIESVSDLRKNLQA----RGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKS 235
FL++S+ DL + LQ+ RG L V G+P + L + + + A + +
Sbjct: 59 FLLDSLQDLDEQLQSATEGRGR-LFVFEGEPTLIFRRLHEQVRLHKICAELDCEPIWNER 117
Query: 236 EEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEM-PTNYGGFREKVK--GVEIRKTIE 292
+E ++ GIE TL+ + G + P Y F V+ GV R I+
Sbjct: 118 DESARLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQIIGVPPRPAID 177
Query: 293 A----------LDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGG 342
A +L+ D P P ++ ++++ + +GG
Sbjct: 178 AHINDATFIQLAPELRQHLGCFDQVPN--PEHFNIYSDNMGFLAKI---------NWRGG 226
Query: 343 ETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKK 402
ET+AL L++ + +G N + +S L GCLS R + +
Sbjct: 227 ETQALALLEERLKVERNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWSVHD 286
Query: 403 TATSISAASKWNDGESGSSGAGSNWLMFELLWRDFF 438
++ A+ G G + +L+WR++F
Sbjct: 287 LFENVQLAA----CVRGVQIEGGAHITGQLIWREYF 318
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 132/324 (40%), Gaps = 55/324 (16%)
Query: 128 VWFRNDLRVHDNESLNTA----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIE 183
VWFR D R+HD+ +L A L + DP K++S P + +
Sbjct: 10 VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDP----KTAS----VEPVHHDYFFQ 61
Query: 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAI-GADAVYAHREVSHDEVKSEEKIEAA 242
+V ++ L+ G DL + G E L +L +A DAVYA+ + D +E E
Sbjct: 62 TVMQFKQMLKTNGGDLYIITGTIEGALSKLLQAFPEIDAVYANDDRVGDGRLRDEAAEHF 121
Query: 243 MKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG-VEIRKTIEAL---DQLK 298
+ + I F + L D + K G T Y F K + RK A+ D L
Sbjct: 122 LAKQSIPFYTFEDAYLTEPDQVLKKDG---TPYKVFTPYYKAWAKERKRTPAVIKRDVLL 178
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
G +G + +L + + K + + GE A++RL+ F + +
Sbjct: 179 GSVHKGTAPDREAETLFNNLIK------------KCSYDWSAIGEEHAIKRLQMFTKK-R 225
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDE-LKKTATSISAASKWNDGE 417
K N+D SI G + ++SP++ G +S RS++ L A S SA +
Sbjct: 226 LSGYKANRD--FPSITG---TSRLSPYIKTGAVSSRSIYYHILNAEADSYSAET------ 274
Query: 418 SGSSGAGSNWLMFELLWRDFFRFI 441
+ EL WRDF+R +
Sbjct: 275 ----------FLKELAWRDFYRMV 288
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 140/336 (41%), Gaps = 58/336 (17%)
Query: 127 IVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESV 185
+VWFR DLR+HDN +L A N S VL +Y PR + + P +A + +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHN-----MSPRQAELINAQL 59
Query: 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSH----DEVKSEEKIEA 241
+ L+ L +G L+ R VE+ K + A+ H ++ +E + ++E
Sbjct: 60 NGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVER 119
Query: 242 AMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 301
A+++ + + F S + + EM + F K +++ E + + P
Sbjct: 120 ALRN--VVCEGFDDSVILPPGAVMTGNHEMYKVFTPF----KNAWLKRLREGMPECVAAP 173
Query: 302 ---SRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKF----A 354
S G +EP PS+ QS + P E A+ +L++F A
Sbjct: 174 KVRSSGSIEPS--PSITLNYPRQSFDTAHF-----PVE------EKAAIAQLRQFCQNGA 220
Query: 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWN 414
EY+ Q +G + ++S LA G LSPR L ++ +
Sbjct: 221 GEYEQQRDFPAVEG----------TSRLSASLATGGLSPRQCLHRL------LAEQPQAL 264
Query: 415 DGESGSSGAGSNWLMFELLWRDFFRFITKKYSSAKK 450
DG GAGS WL EL+WR+F+R + + S K
Sbjct: 265 DG-----GAGSVWLN-ELIWREFYRHLITYHPSLCK 294
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 73/133 (54%), Gaps = 11/133 (8%)
Query: 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FL 181
+ +IVWFR DLR+ DN +L A +E SV PV+ + P + G+ G RAS ++
Sbjct: 5 KKTIVWFRRDLRIEDNPALAAAAHEG-SVFPVFIWCPEEEGQFYPG-------RASRWWM 56
Query: 182 IESVSDLRKNLQARGSDL-VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIE 240
+S++ LR++L+A GS+L +++ + +++ +A GA V + + + ++
Sbjct: 57 KQSLAHLRQSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVK 116
Query: 241 AAMKDEGIEVKYF 253
+ + GI V+ +
Sbjct: 117 EKLVERGISVQSY 129
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 119/321 (37%), Gaps = 42/321 (13%)
Query: 127 IVWFRNDLRVHDNESLNTA---------NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYR 177
+ W R DLR DN L A ++ V V+CFD P R
Sbjct: 3 LFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFD-------DEVLAHAAPPR 55
Query: 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEE 237
+F++++++ LR+ + GSDL+VR G P VL +A + A V + + S +
Sbjct: 56 VAFMLDALAALRERYRDLGSDLIVRHGDPAAVLPAVANDLDATRVVWNHDYSGLATDRDA 115
Query: 238 KIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQL 297
+ A+ G+ F + + ++ G+ + Y F K + E +
Sbjct: 116 GVRDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPEPA 175
Query: 298 KGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357
+ +PS+ +LG ++ P A G A L F
Sbjct: 176 DLAADTALADTSPLPSVQELGFAE------------PEAAVPDAGTAAARSLLDAFRESG 223
Query: 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGE 417
+ +D H+ + ++SP L G + R++++ + + D E
Sbjct: 224 DIYRYEDRRDYPHEEP-----TSRLSPHLKFGTIGIRTVYEAARAAKSDAD-----TDDE 273
Query: 418 SGSSGAGSNWLMFELLWRDFF 438
+ A + +L WR+F+
Sbjct: 274 RENVAA----FIGQLAWREFY 290
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VW R DLR+HD+ +L A V+ + DP + KT P R ++ +E+V
Sbjct: 5 LVWHRGDLRLHDHPALLEALARG-PVVGLVVLDPNNL--------KTTPRRRAWFLENVR 55
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224
LR+ +ARG L V G P + E A+ + A AVYA
Sbjct: 56 ALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYA 93
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 23/96 (23%)
Query: 342 GETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 401
GE AL L+ F +A+ P+ ++ D + G S ++SP+ A+G LSPR
Sbjct: 178 GEEAALAGLRAF---LEAKLPRYAEE--RDRLDGEGGS-RLSPYFALGVLSPR------- 224
Query: 402 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 437
+ W G GA W+ ELLWRDF
Sbjct: 225 --------LAAWEAERRGGEGA-RKWVA-ELLWRDF 250
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VW R DLR+HD+ +L A V+ + DP + KT P R ++ +E+V
Sbjct: 5 LVWHRGDLRLHDHPALLEALARG-PVVGLVVLDPNNL--------KTTPRRRAWFLENVR 55
Query: 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224
LR+ +ARG L V G P + E A+ + A AVYA
Sbjct: 56 ALREAYRARGGALWVLEGLPWEKVPEAARRLKAKAVYA 93
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 23/96 (23%)
Query: 342 GETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELK 401
GE AL L+ F +A+ P+ ++ D + G S ++SP+ A+G LSPR
Sbjct: 178 GEEAALAGLRAF---LEAKLPRYAEE--RDRLDGEGGS-RLSPYFALGVLSPR------- 224
Query: 402 KTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 437
+ W G GA W+ ELLWRDF
Sbjct: 225 --------LAAWEAERRGGEGA-RKWVA-ELLWRDF 250
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1
Length = 483
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 131/324 (40%), Gaps = 49/324 (15%)
Query: 124 RASIVWFRNDLRVHDNESLNTA-NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLI 182
+ +++WFRNDLRV+DN +L+ A N++ V+ ++ P+ + S + SF+
Sbjct: 2 QKNLIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQS-----VSKKKISFMY 56
Query: 183 ESVSDLRKNLQARGSDLVVR----VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEK 238
+ L+K L L L+ K + ++ + E + +E +
Sbjct: 57 YHLISLQKELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYL 116
Query: 239 IEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLK 298
++ + +G VK F + L+ + + E + F++KV I+ + Q
Sbjct: 117 VKKKLSQKGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKV----IQNLHNNIPQCF 172
Query: 299 GLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ 358
+PS+ + D+ L+ S ++ V N GE EA+ RLK F Y+
Sbjct: 173 PVPSKRKSDR-------DIFLT-SISLKNV--NLNFNKNFFPVGEKEAINRLKNFCI-YK 221
Query: 359 AQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATS----ISAASKWN 414
+D + + +SP+L+ G +S R L KT S + S W
Sbjct: 222 FNDYFLKRDYPF-----LDATSMLSPYLSAGIISSRYCLKVLLKTKNSLPLNVLLTSPWF 276
Query: 415 DGESGSSGAGSNWLMFELLWRDFF 438
D ++LWR+F+
Sbjct: 277 D---------------QILWREFY 285
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 131/331 (39%), Gaps = 61/331 (18%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVS 186
+VWFR DLR DN +L A N V +Y P + + P +A + ++
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQH-----HLAPIQADLIWRRLA 57
Query: 187 DLRKNLQARGSDL----VVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAA 242
+L++ L A L V + +LAK + A V A+R+ DE + ++ +
Sbjct: 58 ELQQELAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQL 117
Query: 243 MKDEGIEVKYFWGSTLYHLDD---LPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKG 299
+ ++GI W + DD LP G + T G F + ++ L Q
Sbjct: 118 LSEQGI----IWSA----FDDKCVLP--PGSVRTKQGEFFKVF--TPFKRAWLTLFQPPV 165
Query: 300 LPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQ- 358
+ V ++P SA VWH + A + + T +AA+++
Sbjct: 166 IGKNRPVALWNVP---------SALAELVWHPEQ-AFDYPRIDST-------PWAADFET 208
Query: 359 --AQPPKGNKDGNHDSIYGANFSCK-----ISPWLAMGCLSPRSMFDELKKTATSISAAS 411
AQ ++ D +F + +SP+LA+G LS R A
Sbjct: 209 VRAQLRDFCRERVQDYHQARDFPAREGTSSLSPYLAIGVLSARQ------------CVAR 256
Query: 412 KWNDGESGSSGAGSNWLMFELLWRDFFRFIT 442
+++ G G+ + EL+WR+F++ +
Sbjct: 257 LYHESSMGELSEGAQVWLSELIWREFYQHLV 287
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 127 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRAS--FLIES 184
IVWFR DLRV DN +L A V+ ++ + P + G G R S +L S
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEGHYHPG-------RVSRWWLKNS 66
Query: 185 VSDLRKNLQARGSDLVVRVGKPETV-LVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM 243
++ L +L++ G+ L+ + L+++ K+ GA ++ + + + + + +
Sbjct: 67 LAQLDSSLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVL 126
Query: 244 KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKV 282
+GI V+ F LY ++ +LG + + F E+
Sbjct: 127 TAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERC 165
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFL 181
+ + ++VW + DLR+ D+ L A L +Y F+P G + F+
Sbjct: 1 MEKINLVWLKRDLRLTDHAPLQAALTSGRPTLLLYLFEPMLLGDA-----HYSERHWRFV 55
Query: 182 IESVSDLRKNL-QARGSDLVVRVGKPETVLVELAKAIGADAVYAHREV 228
+S+ + ++L Q++G L+V +T +A+ +A+Y+H+EV
Sbjct: 56 WQSLQAINRDLAQSKGEVLIV-TSDWQTCFARIAERYAIEAIYSHQEV 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,421,950
Number of Sequences: 539616
Number of extensions: 7630419
Number of successful extensions: 16458
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 16252
Number of HSP's gapped (non-prelim): 107
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)