Query 012338
Match_columns 465
No_of_seqs 227 out of 1242
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:28:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1np7_A DNA photolyase; protein 100.0 8.4E-56 2.9E-60 470.4 30.0 305 124-456 6-314 (489)
2 3fy4_A 6-4 photolyase; DNA rep 100.0 1.5E-56 5.2E-61 478.6 24.2 311 122-458 3-324 (537)
3 2j4d_A Cryptochrome 3, cryptoc 100.0 2.5E-55 8.5E-60 470.0 29.3 311 120-458 36-352 (525)
4 1owl_A Photolyase, deoxyribodi 100.0 4.6E-54 1.6E-58 456.3 27.0 294 124-450 3-302 (484)
5 3tvs_A Cryptochrome-1; circadi 100.0 9.5E-54 3.2E-58 457.8 28.6 313 122-456 2-334 (538)
6 2wq7_A RE11660P; lyase-DNA com 100.0 2.5E-53 8.6E-58 456.1 23.8 303 124-458 29-348 (543)
7 1dnp_A DNA photolyase; DNA rep 100.0 5.4E-53 1.8E-57 446.4 23.8 284 125-451 2-294 (471)
8 1u3d_A Cryptochrome 1 apoprote 100.0 4.6E-52 1.6E-56 443.5 29.2 304 119-456 7-323 (509)
9 2e0i_A 432AA long hypothetical 100.0 1E-50 3.5E-55 425.1 20.7 257 126-450 3-262 (440)
10 2j07_A Deoxyribodipyrimidine p 100.0 6.8E-50 2.3E-54 417.2 25.8 261 125-450 3-263 (420)
11 3umv_A Deoxyribodipyrimidine p 100.0 3.6E-49 1.2E-53 419.3 22.4 299 121-459 35-347 (506)
12 2xry_A Deoxyribodipyrimidine p 100.0 6.9E-49 2.4E-53 416.6 20.2 294 125-459 38-347 (482)
13 3zxs_A Cryptochrome B, rscryb; 100.0 2.6E-32 9E-37 287.5 18.1 310 117-462 7-354 (522)
14 3dlo_A Universal stress protei 90.1 2.5 8.5E-05 36.3 10.8 85 133-226 32-125 (155)
15 3fg9_A Protein of universal st 88.4 2.1 7.1E-05 36.4 8.9 87 137-227 29-128 (156)
16 3tnj_A Universal stress protei 88.3 4.8 0.00016 33.7 11.1 121 133-253 14-145 (150)
17 3s3t_A Nucleotide-binding prot 88.2 2.5 8.4E-05 35.3 9.2 95 133-227 13-117 (146)
18 3fdx_A Putative filament prote 88.2 3.6 0.00012 34.1 10.2 90 138-227 16-115 (143)
19 3hgm_A Universal stress protei 84.6 7.7 0.00026 32.1 10.4 91 137-227 14-119 (147)
20 2dum_A Hypothetical protein PH 84.6 3.8 0.00013 35.3 8.6 121 133-253 13-154 (170)
21 1tq8_A Hypothetical protein RV 81.3 3.2 0.00011 35.9 6.8 121 133-253 25-156 (163)
22 2z08_A Universal stress protei 76.7 18 0.00062 29.5 9.9 86 137-227 14-108 (137)
23 3rjz_A N-type ATP pyrophosphat 74.2 5.2 0.00018 37.7 6.3 97 140-251 19-120 (237)
24 1jmv_A USPA, universal stress 73.7 23 0.0008 28.9 9.9 115 133-253 10-136 (141)
25 3idf_A USP-like protein; unive 72.6 30 0.001 28.1 10.2 87 138-227 14-110 (138)
26 3olq_A Universal stress protei 69.8 73 0.0025 29.8 14.7 115 139-254 177-304 (319)
27 3fvv_A Uncharacterized protein 69.8 17 0.00058 32.3 8.6 44 182-225 94-137 (232)
28 3loq_A Universal stress protei 69.1 56 0.0019 30.4 12.6 103 133-253 178-288 (294)
29 3mt0_A Uncharacterized protein 67.6 37 0.0013 31.7 10.9 110 139-253 155-274 (290)
30 3loq_A Universal stress protei 62.4 85 0.0029 29.1 12.4 107 145-254 46-161 (294)
31 1mjh_A Protein (ATP-binding do 60.7 17 0.00059 30.5 6.5 121 133-253 13-157 (162)
32 2iel_A Hypothetical protein TT 53.9 50 0.0017 28.3 7.9 73 181-253 56-133 (138)
33 2gm3_A Unknown protein; AT3G01 52.5 28 0.00097 29.7 6.6 73 182-254 86-162 (175)
34 3u80_A 3-dehydroquinate dehydr 50.2 60 0.002 28.2 7.9 78 183-261 29-113 (151)
35 3n07_A 3-deoxy-D-manno-octulos 49.9 28 0.00095 31.1 6.2 53 190-248 62-114 (195)
36 3mmz_A Putative HAD family hyd 48.5 24 0.00083 30.6 5.5 54 188-248 47-100 (176)
37 3ij5_A 3-deoxy-D-manno-octulos 48.3 19 0.00066 32.7 4.9 55 188-248 84-138 (211)
38 3olq_A Universal stress protei 47.3 1.6E+02 0.0055 27.3 11.6 120 133-256 15-151 (319)
39 3h75_A Periplasmic sugar-bindi 45.6 1E+02 0.0035 29.2 10.0 72 180-256 18-95 (350)
40 3mn1_A Probable YRBI family ph 45.2 23 0.0008 31.1 4.9 56 188-249 54-109 (189)
41 1sur_A PAPS reductase; assimil 44.9 1.1E+02 0.0037 27.4 9.5 70 183-254 31-104 (215)
42 1gqo_A Dehydroquinase; dehydra 44.7 1.1E+02 0.0039 26.2 8.8 71 189-263 35-108 (143)
43 3qk7_A Transcriptional regulat 43.6 97 0.0033 28.6 9.3 72 179-256 23-97 (294)
44 4eze_A Haloacid dehalogenase-l 43.2 93 0.0032 29.9 9.2 44 183-226 182-225 (317)
45 2p9j_A Hypothetical protein AQ 42.9 93 0.0032 25.8 8.3 57 187-249 43-99 (162)
46 2uyg_A 3-dehydroquinate dehydr 42.9 1.4E+02 0.0049 25.8 9.2 72 187-262 32-107 (149)
47 3i8o_A KH domain-containing pr 42.9 1.1E+02 0.0039 26.1 8.6 86 151-253 32-130 (142)
48 1uqr_A 3-dehydroquinate dehydr 42.4 1.1E+02 0.0036 26.7 8.3 72 187-262 34-108 (154)
49 3jy6_A Transcriptional regulat 41.5 1.6E+02 0.0053 26.7 10.3 70 180-256 21-94 (276)
50 2l82_A Designed protein OR32; 40.9 93 0.0032 25.5 7.2 52 199-254 5-59 (162)
51 3e8m_A Acylneuraminate cytidyl 40.8 47 0.0016 27.8 6.0 54 189-248 40-93 (164)
52 3n1u_A Hydrolase, HAD superfam 39.6 75 0.0026 27.8 7.4 53 190-248 56-108 (191)
53 1b43_A Protein (FEN-1); nuclea 39.2 71 0.0024 31.2 7.7 42 183-224 130-171 (340)
54 1h05_A 3-dehydroquinate dehydr 39.2 1.2E+02 0.0041 26.2 8.0 71 188-262 36-109 (146)
55 3kip_A 3-dehydroquinase, type 38.7 1.1E+02 0.0038 27.0 7.9 67 193-263 55-125 (167)
56 3n28_A Phosphoserine phosphata 38.4 1.2E+02 0.0041 28.8 9.2 42 184-225 182-223 (335)
57 4gxt_A A conserved functionall 38.0 17 0.00059 36.5 3.0 46 181-226 222-273 (385)
58 3rfu_A Copper efflux ATPase; a 37.3 72 0.0025 34.9 8.0 59 190-253 564-622 (736)
59 3mt0_A Uncharacterized protein 37.1 1.1E+02 0.0038 28.3 8.6 104 133-254 15-127 (290)
60 3nvb_A Uncharacterized protein 37.1 1.1E+02 0.0039 30.6 8.9 64 180-249 256-327 (387)
61 3mpo_A Predicted hydrolase of 36.6 1.8E+02 0.006 26.4 9.8 68 190-260 32-118 (279)
62 3p96_A Phosphoserine phosphata 36.5 1.1E+02 0.0039 30.1 9.0 65 184-249 260-338 (415)
63 3lwz_A 3-dehydroquinate dehydr 36.4 2E+02 0.0067 25.0 9.1 68 191-262 44-114 (153)
64 1gtz_A 3-dehydroquinate dehydr 35.2 1.3E+02 0.0045 26.2 7.8 71 188-262 40-114 (156)
65 2lnd_A De novo designed protei 35.2 60 0.0021 25.2 5.0 62 183-247 38-103 (112)
66 3n8k_A 3-dehydroquinate dehydr 34.6 1.3E+02 0.0044 26.7 7.6 68 191-262 65-135 (172)
67 3gv0_A Transcriptional regulat 34.4 1.3E+02 0.0044 27.5 8.5 71 180-256 24-98 (288)
68 3l49_A ABC sugar (ribose) tran 34.3 2.6E+02 0.0089 25.2 11.1 72 180-256 19-95 (291)
69 2r8e_A 3-deoxy-D-manno-octulos 34.3 63 0.0021 28.1 5.9 54 189-248 62-115 (188)
70 3tva_A Xylose isomerase domain 34.1 1.6E+02 0.0054 27.1 9.1 69 183-251 51-156 (290)
71 1vp8_A Hypothetical protein AF 33.0 49 0.0017 30.1 4.8 68 183-252 30-103 (201)
72 3e61_A Putative transcriptiona 32.1 1.8E+02 0.0063 26.1 9.1 69 180-256 22-95 (277)
73 1ul1_X Flap endonuclease-1; pr 31.4 1E+02 0.0035 30.7 7.5 40 185-224 137-176 (379)
74 3lmz_A Putative sugar isomeras 31.1 1.3E+02 0.0043 27.3 7.7 64 183-251 61-130 (257)
75 3egc_A Putative ribose operon 31.0 1.3E+02 0.0043 27.6 7.7 71 180-256 22-96 (291)
76 3p6l_A Sugar phosphate isomera 30.5 1.9E+02 0.0064 26.1 8.8 64 183-251 63-132 (262)
77 3kzx_A HAD-superfamily hydrola 29.9 92 0.0031 27.1 6.3 43 186-228 109-155 (231)
78 3cis_A Uncharacterized protein 29.5 71 0.0024 30.0 5.8 88 133-226 179-275 (309)
79 3gkn_A Bacterioferritin comigr 29.4 95 0.0032 25.7 6.0 45 180-224 53-97 (163)
80 1q77_A Hypothetical protein AQ 29.1 59 0.002 26.2 4.5 110 133-252 12-136 (138)
81 3cis_A Uncharacterized protein 29.0 1.5E+02 0.005 27.7 8.0 128 122-256 18-162 (309)
82 3ab8_A Putative uncharacterize 29.0 1.5E+02 0.0052 26.8 7.9 116 137-254 12-148 (268)
83 3g40_A Na-K-CL cotransporter; 28.6 4E+02 0.014 25.6 10.9 115 124-253 20-144 (294)
84 2c4w_A 3-dehydroquinate dehydr 28.6 2E+02 0.0068 25.6 7.9 66 194-263 51-120 (176)
85 1toa_A Tromp-1, protein (perip 28.5 1.8E+02 0.0062 27.9 8.6 68 181-253 175-252 (313)
86 3l8h_A Putative haloacid dehal 28.3 71 0.0024 27.0 5.1 25 182-206 29-53 (179)
87 4fe7_A Xylose operon regulator 28.3 89 0.003 30.8 6.5 68 180-255 38-105 (412)
88 2nyt_A Probable C->U-editing e 27.9 1.7E+02 0.0058 26.2 7.6 73 178-252 67-144 (190)
89 2o8v_A Phosphoadenosine phosph 27.8 2.2E+02 0.0074 26.3 8.7 69 184-254 33-105 (252)
90 3k4h_A Putative transcriptiona 27.8 2.1E+02 0.0072 25.8 8.7 71 180-256 27-101 (292)
91 3ujp_A Mn transporter subunit; 27.7 2.3E+02 0.0078 27.2 9.1 72 177-253 164-245 (307)
92 2izo_A FEN1, flap structure-sp 27.5 86 0.0029 30.7 6.1 40 183-222 127-166 (346)
93 3hcw_A Maltose operon transcri 27.4 2.3E+02 0.0078 25.9 8.9 72 179-256 25-100 (295)
94 2l69_A Rossmann 2X3 fold prote 27.3 1.5E+02 0.0051 23.6 6.1 43 183-225 13-57 (134)
95 3dbi_A Sugar-binding transcrip 26.9 3.5E+02 0.012 25.2 10.3 72 180-256 77-152 (338)
96 3huu_A Transcription regulator 26.0 2E+02 0.0069 26.4 8.3 73 179-257 40-116 (305)
97 4fe3_A Cytosolic 5'-nucleotida 25.7 70 0.0024 30.0 4.9 32 187-218 148-179 (297)
98 4dw8_A Haloacid dehalogenase-l 25.6 3.7E+02 0.013 24.1 10.6 68 191-261 33-120 (279)
99 3o74_A Fructose transport syst 25.5 2.9E+02 0.0099 24.5 9.1 72 180-256 16-91 (272)
100 2yvq_A Carbamoyl-phosphate syn 25.3 2.2E+02 0.0074 24.0 7.5 42 210-251 88-129 (143)
101 3sd7_A Putative phosphatase; s 25.0 1.2E+02 0.0039 26.7 6.1 64 185-249 115-182 (240)
102 1zun_A Sulfate adenylyltransfe 24.7 3.9E+02 0.013 25.7 10.2 73 180-255 31-111 (325)
103 2pq0_A Hypothetical conserved 24.4 3.2E+02 0.011 24.3 9.2 65 191-258 31-109 (258)
104 3l6u_A ABC-type sugar transpor 24.4 3.7E+02 0.013 24.1 9.8 72 180-256 22-98 (293)
105 1k1e_A Deoxy-D-mannose-octulos 24.3 98 0.0034 26.5 5.3 38 188-225 43-80 (180)
106 3ixr_A Bacterioferritin comigr 23.9 1E+02 0.0036 26.4 5.4 41 182-222 71-111 (179)
107 3ksm_A ABC-type sugar transpor 23.8 3.2E+02 0.011 24.2 9.1 72 180-256 14-93 (276)
108 1nf2_A Phosphatase; structural 23.8 2E+02 0.0068 26.2 7.7 73 185-259 25-111 (268)
109 2nyv_A Pgpase, PGP, phosphogly 23.5 1.4E+02 0.0049 26.0 6.4 33 187-219 90-122 (222)
110 3e3m_A Transcriptional regulat 23.4 4.4E+02 0.015 24.8 10.4 70 180-255 84-157 (355)
111 3cx3_A Lipoprotein; zinc-bindi 23.4 3.1E+02 0.011 25.7 9.0 69 180-253 156-232 (284)
112 8abp_A L-arabinose-binding pro 23.3 4.2E+02 0.014 23.9 10.1 72 180-256 16-91 (306)
113 3m1y_A Phosphoserine phosphata 23.2 3.4E+02 0.011 22.9 8.8 42 184-225 79-120 (217)
114 1xvl_A Mn transporter, MNTC pr 22.9 3E+02 0.01 26.4 9.0 70 179-253 180-259 (321)
115 3mc1_A Predicted phosphatase, 22.9 1.3E+02 0.0043 26.0 5.8 64 185-249 91-158 (226)
116 3dx5_A Uncharacterized protein 22.9 3.3E+02 0.011 24.7 9.0 68 183-250 48-139 (286)
117 3gi1_A LBP, laminin-binding pr 22.9 2.3E+02 0.0077 26.8 8.0 70 179-253 157-234 (286)
118 1pq4_A Periplasmic binding pro 21.5 1.2E+02 0.0042 28.8 5.7 78 175-256 164-246 (291)
119 3e58_A Putative beta-phosphogl 21.5 2.6E+02 0.0091 23.2 7.6 46 183-228 92-141 (214)
120 3v7e_A Ribosome-associated pro 21.5 1.3E+02 0.0044 22.9 4.8 42 210-254 19-60 (82)
121 2q02_A Putative cytoplasmic pr 21.2 3.4E+02 0.012 24.2 8.7 69 183-251 51-137 (272)
122 3dnp_A Stress response protein 21.2 2.9E+02 0.01 25.0 8.3 70 191-260 34-116 (290)
123 3dao_A Putative phosphatse; st 21.1 2.7E+02 0.0094 25.4 8.1 67 191-260 50-133 (283)
124 3k9c_A Transcriptional regulat 21.1 2.7E+02 0.0094 25.3 8.1 69 180-256 25-97 (289)
125 2prs_A High-affinity zinc upta 20.8 2.7E+02 0.0093 26.0 8.1 68 181-253 154-229 (284)
126 3ix7_A Uncharacterized protein 20.6 3.7E+02 0.013 22.6 7.9 87 149-253 31-122 (134)
127 3kke_A LACI family transcripti 20.5 3.6E+02 0.012 24.6 8.8 71 180-256 29-103 (303)
128 2wm8_A MDP-1, magnesium-depend 20.4 2.1E+02 0.0071 24.4 6.6 63 184-249 72-136 (187)
129 2w91_A Endo-beta-N-acetylgluco 20.4 1.9E+02 0.0064 31.1 7.4 106 125-256 93-209 (653)
130 3j08_A COPA, copper-exporting 20.3 66 0.0023 34.5 3.9 41 187-227 464-504 (645)
131 3nkl_A UDP-D-quinovosamine 4-d 20.3 1.9E+02 0.0066 23.3 6.2 44 208-253 55-98 (141)
132 3kws_A Putative sugar isomeras 20.3 2.3E+02 0.0079 25.9 7.4 69 183-251 64-163 (287)
133 2rgy_A Transcriptional regulat 20.2 4.8E+02 0.016 23.5 10.0 69 180-255 22-98 (290)
134 2goy_A Adenosine phosphosulfat 20.1 2E+02 0.0069 26.9 6.9 69 184-254 42-113 (275)
No 1
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=8.4e-56 Score=470.37 Aligned_cols=305 Identities=38% Similarity=0.710 Sum_probs=249.1
Q ss_pred CeEEEEEeCCCCccccHHHHHHhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 012338 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (465)
Q Consensus 124 ~~~LvWFRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v~~ 203 (465)
+.+|||||||||++||+||.+|++.+.+|+||||+||.++..+..|+...|.+|+.||++||++|+++|+++|++|+|+.
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~ 85 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTT 85 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 47899999999999999999999988899999999998886543344568999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCCCCCCCCCCCCCchHHHHHHH
Q 012338 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283 (465)
Q Consensus 204 G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~l~~~~g~~~~~ft~Frk~~~ 283 (465)
|++.++|.+|+++++|++|++|++|++++++||++|++.|++.||+++.+++++|++++++.+..|++|++||+|+++|+
T Consensus 86 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~F~~~~~ 165 (489)
T 1np7_A 86 GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIE 165 (489)
T ss_dssp SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999998
Q ss_pred -h-ccccccchhhccCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCCcHHHHHHHHHHHH--HHHhc
Q 012338 284 -G-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA--AEYQA 359 (465)
Q Consensus 284 -~-l~~~~~l~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~w~~~~~~~~~~~gGE~~Al~~L~~Fl--~~~l~ 359 (465)
+ ...+.+++.|..++..+. ....+.+|.++++++... +......|+|||++|+++|++|+ ++++.
T Consensus 166 ~~~~~~~~p~~~p~~~~~~~~--~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~ 234 (489)
T 1np7_A 166 KKKISIRPCFFAPSQLLPSPN--IKLELTAPPPEFFPQINF---------DHRSVLAFQGGETAGLARLQDYFWHGDRLK 234 (489)
T ss_dssp TTTCCCCCCCCCCSCCCCCCC--CCCCCCCCCGGGSCCCCC---------CTTSSCCCCCSHHHHHHHHHHHHTTSCCGG
T ss_pred HhccCCCCCCCCcccccCccc--cccccCCCCHhhcCCCCc---------CccccCCCCCcHHHHHHHHHHHHhcchhHh
Confidence 5 333344444433222211 111234566666654321 11112358999999999999999 56788
Q ss_pred CCCCCCCCCCCCCCCCCCCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 012338 360 QPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFR 439 (465)
Q Consensus 360 ~Y~~~~~~~~Rn~~~~~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EL~WREF~~ 439 (465)
.|.+ .||++++.++||+|||||+|||||||+|++++.+..... ....+..||++||+|||||+
T Consensus 235 ~Y~~-----~Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~------------~~~~~~~~f~~eL~WRef~~ 297 (489)
T 1np7_A 235 DYKE-----TRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQER------------VSNDSTHWLIFELLWRDFFR 297 (489)
T ss_dssp GHHH-----HTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT------------CCSHHHHHHHHHHHHHHHHH
T ss_pred hhhh-----cccCCccccCCcCcChhhcCCCCCHHHHHHHHHHHhhcc------------cccchHHHHHHHHHHHHHHH
Confidence 8876 377777778999999999999999999999998743221 11345667889999999999
Q ss_pred HHHHhCCcccccccccc
Q 012338 440 FITKKYSSAKKVVEAVP 456 (465)
Q Consensus 440 ~i~~~~P~~~~~~~~~p 456 (465)
+++++||++.......+
T Consensus 298 ~~~~~~p~~~~~~~~~~ 314 (489)
T 1np7_A 298 FVAQKYGNKLFNRGGLL 314 (489)
T ss_dssp HHHHHHGGGGGSTTTTT
T ss_pred HHHHHCcchhhhhcCcc
Confidence 99999999865444443
No 2
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.5e-56 Score=478.64 Aligned_cols=311 Identities=27% Similarity=0.406 Sum_probs=244.8
Q ss_pred CCCeEEEEEeCCCCccccHHHHHHhhcCCceeeEEEeCCCccCCC----CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 012338 122 IRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKS----SSGFDKTGPYRASFLIESVSDLRKNLQARGS 197 (465)
Q Consensus 122 ~~~~~LvWFRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~----~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi 197 (465)
..+.+|||||||||++||+||++|++.+.+|+||||+||.++..+ ..|..+.|.+|++||++||++|+++|+++|+
T Consensus 3 ~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~ 82 (537)
T 3fy4_A 3 TGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGS 82 (537)
T ss_dssp -CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCcccchhHHHHHHHhcCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 346789999999999999999999998889999999999887642 2234468999999999999999999999999
Q ss_pred cEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCCCCCC-CCCCCCCch
Q 012338 198 DLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYG 276 (465)
Q Consensus 198 ~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~l~~~-~g~~~~~ft 276 (465)
+|+|++|++.++|.+|+++++|++||+|++|++++++||++|++.|++.||+++.+++++|++++++.++ .|++|++||
T Consensus 83 ~L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~y~vft 162 (537)
T 3fy4_A 83 RLLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQ 162 (537)
T ss_dssp CCEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCSSHH
T ss_pred ceEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999754 456999999
Q ss_pred HHHHHHHhcc-ccccc-hhhccCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCCcHHHHHHHHHHHH
Q 012338 277 GFREKVKGVE-IRKTI-EALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA 354 (465)
Q Consensus 277 ~Frk~~~~l~-~~~~l-~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~w~~~~~~~~~~~gGE~~Al~~L~~Fl 354 (465)
+|+++|++.. .+.++ +.|..++..+.........+|+++++++.+... .....|+|||++|+++|++|+
T Consensus 163 pf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~---------~~~~~~~~Ge~~A~~~L~~Fl 233 (537)
T 3fy4_A 163 SFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQ---------ADWTPFRGGESEALKRLTKSI 233 (537)
T ss_dssp HHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGGGS---------SCCCSCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCcCCCCCccccCCCcccccccccccCCcHHhcCCCcccc---------cccCCCCccHHHHHHHHHHHH
Confidence 9999998753 12221 222222111110111223466677776643210 011258999999999999999
Q ss_pred HH--HhcCCCCCCCCCCCCCCC--CCCCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCCCcchHHHHH
Q 012338 355 AE--YQAQPPKGNKDGNHDSIY--GANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMF 430 (465)
Q Consensus 355 ~~--~l~~Y~~~~~~~~Rn~~~--~~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 430 (465)
.+ .+..|.+. ||.+. +.++||+|||||+|||||||+|++++.+.+.... ....+.++|++
T Consensus 234 ~~~~~l~~Y~~~-----rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~-----------~~~~~~~~f~~ 297 (537)
T 3fy4_A 234 SDKAWVANFEKP-----KGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVK-----------KHTSPPVSLLG 297 (537)
T ss_dssp CCHHHHHTCCGG-----GCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTTS-----------CCCCTTTSHHH
T ss_pred hCchHHhhhccc-----ccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhcc-----------cccccHHHHHH
Confidence 76 68888863 55432 2578999999999999999999999987553210 11233445669
Q ss_pred HHHHHHHHHHHHHhCCcccccccccccc
Q 012338 431 ELLWRDFFRFITKKYSSAKKVVEAVPAT 458 (465)
Q Consensus 431 EL~WREF~~~i~~~~P~~~~~~~~~p~~ 458 (465)
||+|||||+++++++|++.+ .+..|.|
T Consensus 298 eL~WRef~~~~~~~~p~~~~-~~~~~~~ 324 (537)
T 3fy4_A 298 QLLWREFFYTTAFGTPNFDK-MKGNRIC 324 (537)
T ss_dssp HHHHHHHHHHHHHTCTTTTS-STTCTTS
T ss_pred HHHHHHHHHHHHHHCcchhc-ccCChhh
Confidence 99999999999999999854 4555544
No 3
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=2.5e-55 Score=469.95 Aligned_cols=311 Identities=37% Similarity=0.706 Sum_probs=248.5
Q ss_pred CCCCCeEEEEEeCCCCccccHHHHHHhhcCCceeeEEEeCCCccCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhCCCc
Q 012338 120 AAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSD 198 (465)
Q Consensus 120 ~~~~~~~LvWFRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~-g~~~~~~~r~~FllesL~dL~~~L~~~Gi~ 198 (465)
.+.++.+|||||||||++||+||.+|++.+.+|+||||+||.++..+.. |+...|.+|+.||++||++|+++|+++|++
T Consensus 36 ~~~~~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~ 115 (525)
T 2j4d_A 36 RKGKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLN 115 (525)
T ss_dssp CTTCCEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEEeCCCcCcchhHHHHHHHhcCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 4445678999999999999999999998888999999999988754221 334679999999999999999999999999
Q ss_pred EEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcC--CeEEEeeCCeeeeCCCCCCCCCCCCCCch
Q 012338 199 LVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYG 276 (465)
Q Consensus 199 L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~g--I~v~~~~~~~L~~p~~l~~~~g~~~~~ft 276 (465)
|+|+.|++.++|.+|+++++|++|++|++|++++++||++|++.|++.| |+++.+++++|++++++++..|++|++|+
T Consensus 116 L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~vft 195 (525)
T 2j4d_A 116 LLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYT 195 (525)
T ss_dssp CEEEESCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSSHH
T ss_pred EEEEeCCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEccccccccCCCCcccHH
Confidence 9999999999999999999999999999999999999999999999999 89999999999999999988889999999
Q ss_pred HHHHHHHh-ccccccchhhccCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCCcHHHHHHHHHHHH-
Q 012338 277 GFREKVKG-VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFA- 354 (465)
Q Consensus 277 ~Frk~~~~-l~~~~~l~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~w~~~~~~~~~~~gGE~~Al~~L~~Fl- 354 (465)
+|+++|++ +....+++.|..++..+. ......+|+++++++... +......|+|||++|+++|++||
T Consensus 196 ~F~r~~~~~~~~~~p~~~p~~~~~~~~--~~~~~~~~~l~~l~~~~~---------~~~~~~~~~~Ge~~A~~~L~~Fl~ 264 (525)
T 2j4d_A 196 QFRKSVEAKCSIRSSTRIPLSLGPTPS--VDDWGDVPTLEKLGVEPQ---------EVTRGMRFVGGESAGVGRVFEYFW 264 (525)
T ss_dssp HHHHHHHHHCCCCCCCCBCSCCCCCCC--CSCCCCCCCTTTTTCCCC---------CCCSEEEECCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCCCCccccCCccc--cccccCCCCHHHcCCCcc---------cccccCCCCCcHHHHHHHHHHHHh
Confidence 99999987 333334443332222110 012233455555544321 00111248999999999999999
Q ss_pred H-HHhcCCCCCCCCCCCCCCCCCCCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCCCcchHHHHHHHH
Q 012338 355 A-EYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELL 433 (465)
Q Consensus 355 ~-~~l~~Y~~~~~~~~Rn~~~~~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EL~ 433 (465)
+ +++..|.+ .||.+++.++||+|||||+|||||||+|++++.+..... ....+..||++||+
T Consensus 265 ~~~~l~~Y~~-----~Rd~~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~------------~~~~~~~~f~~EL~ 327 (525)
T 2j4d_A 265 KKDLLKVYKE-----TRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEKER------------VANNSTYWVLFELI 327 (525)
T ss_dssp TSCCGGGHHH-----HTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHT------------CCSHHHHHHHHHHH
T ss_pred hCchHhhhcc-----cCCCccccccCCCcChhhcCCcCCHHHHHHHHHHHhhcc------------cccccHHHHHHHHH
Confidence 5 57888876 377777889999999999999999999999998754321 12345668889999
Q ss_pred HHHHHHHHHHhCCcccccccccccc
Q 012338 434 WRDFFRFITKKYSSAKKVVEAVPAT 458 (465)
Q Consensus 434 WREF~~~i~~~~P~~~~~~~~~p~~ 458 (465)
|||||++++++||......++++.|
T Consensus 328 WREf~~~~~~~~~~~~~~~~~~~~~ 352 (525)
T 2j4d_A 328 WRDYFRFLSIKCGNSLFHLGGPRNV 352 (525)
T ss_dssp HHHHHHHHHHHHGGGGTSTTTTTTC
T ss_pred HHHHHHHHHHHcCchhhhccCchhh
Confidence 9999999998886544445555533
No 4
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=4.6e-54 Score=456.25 Aligned_cols=294 Identities=23% Similarity=0.421 Sum_probs=235.7
Q ss_pred CeEEEEEeCCCCccccHHHHHHhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 012338 124 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (465)
Q Consensus 124 ~~~LvWFRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v~~ 203 (465)
+.+|||||||||++||+||.+|++.+.+|+||||+||.+++.. ..|.+|+.||++||++|+++|+++|++|+|+.
T Consensus 3 ~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~~~~-----~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~ 77 (484)
T 1owl_A 3 APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSA-----DMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ 77 (484)
T ss_dssp CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTCT-----TCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCCEEEEEEEcchhhcCC-----CCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4679999999999999999999974558999999999887532 57899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCCCCCCCCCCCCCchHHHHHHH
Q 012338 204 GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 283 (465)
Q Consensus 204 G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~l~~~~g~~~~~ft~Frk~~~ 283 (465)
|++.++|.+|+++++|++|++|++|++++++||++|++.|++.||+++.+++++|++++++..+.|++|.+||+|+++|+
T Consensus 78 g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~ 157 (484)
T 1owl_A 78 GDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQ 157 (484)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999998
Q ss_pred hccccccchhhccCCCCCCC------CCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCCcHHHHHHHHHHHHHHH
Q 012338 284 GVEIRKTIEALDQLKGLPSR------GDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEY 357 (465)
Q Consensus 284 ~l~~~~~l~~p~~l~~~p~~------~~~~~~~ip~l~~l~~~~~~~~~~~w~~~~~~~~~~~gGE~~Al~~L~~Fl~~~ 357 (465)
+.....+++.|..++..+.. ... ...+++++.+++.. .+. . .|+|||++|+++|++|++++
T Consensus 158 ~~~~~~p~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~---------~~~--~-~~~~Ge~~A~~~L~~Fl~~~ 224 (484)
T 1owl_A 158 AQPKPTPVATPTELVDLSPEQLTAIAPLL-LSELPTLKQLGFDW---------DGG--F-PVEPGETAAIARLQEFCDRA 224 (484)
T ss_dssp HSCCCCCCCCCCSCCCCCHHHHHHHGGGC-CSSCCCTGGGTCCC---------CSC--C-SSCSSHHHHHHHHHHHHHTG
T ss_pred HhcCCCCCCCccccccccccccccccccc-cCCCCCHHHcCCCc---------ccc--C-cCCCCHHHHHHHHHHHHHHH
Confidence 75322233333222111000 000 11233333333211 111 3 58999999999999999999
Q ss_pred hcCCCCCCCCCCCCCCCCCCCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCCCcchHHHHHHHHHHHH
Q 012338 358 QAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDF 437 (465)
Q Consensus 358 l~~Y~~~~~~~~Rn~~~~~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EL~WREF 437 (465)
+..|.+. ||. ++.++||+|||||+|||||||+|++++.+......... ..++...|+ +||+||||
T Consensus 225 l~~Y~~~-----rd~-p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~--------~~~~~~~fl-~eL~WREf 289 (484)
T 1owl_A 225 IADYDPQ-----RNF-PAEAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDE--------ARNSIRVWQ-QELAWREF 289 (484)
T ss_dssp GGGHHHH-----TTC-TTSCCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHH--------HHHHHHHHH-HHHHHHHH
T ss_pred HHHhccc-----cCC-CCccCCcCccHhHcCCCcCHHHHHHHHHHHhccccccc--------ccccHHHHH-HHHHHHHH
Confidence 9999863 674 77889999999999999999999999987654100000 012234455 79999999
Q ss_pred HHHHHHhCCcccc
Q 012338 438 FRFITKKYSSAKK 450 (465)
Q Consensus 438 ~~~i~~~~P~~~~ 450 (465)
|+++++++|++..
T Consensus 290 ~~~~~~~~P~~~~ 302 (484)
T 1owl_A 290 YQHALYHFPSLAD 302 (484)
T ss_dssp HHHHHHHCGGGGG
T ss_pred HHHHHHhCCcccc
Confidence 9999999999855
No 5
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=9.5e-54 Score=457.78 Aligned_cols=313 Identities=21% Similarity=0.310 Sum_probs=238.5
Q ss_pred CCCeEEEEEeCCCCccccHHHHHHhhcCC---ceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---
Q 012338 122 IRRASIVWFRNDLRVHDNESLNTANNESV---SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQAR--- 195 (465)
Q Consensus 122 ~~~~~LvWFRrDLRl~DN~AL~~A~~~~~---~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~--- 195 (465)
.++++|||||||||++||+||.+|++.+. +|+||||+||.++..+ ..|.+|++||++||.+|+++|+++
T Consensus 2 ~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~~~-----~~~~~r~~Fl~~sL~~L~~~L~~~~~~ 76 (538)
T 3tvs_A 2 TRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTK-----NVGYNRMRFLLDSLQDIDDQLQAATDG 76 (538)
T ss_dssp CSCEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSCST-----TCCHHHHHHHHHHHHHHHHHGGGSCSS
T ss_pred CCCcEEEEeCCCcchhhhHHHHHHHHhCCCCCCEEEEEecChhhhccC-----CCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 46789999999999999999999998766 9999999999988643 578999999999999999999999
Q ss_pred CCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCCCCCCC-CCCCCC
Q 012338 196 GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKL-GEMPTN 274 (465)
Q Consensus 196 Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~l~~~~-g~~~~~ 274 (465)
|++|+|++|++.++|.+|+++++|++||+|++|++++++||++|++.|++.||.++.|++++|++++++..+. +.+|.+
T Consensus 77 G~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~ 156 (538)
T 3tvs_A 77 RGRLLVFEGEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLT 156 (538)
T ss_dssp SSCCEEEESCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCS
T ss_pred CCeEEEEeCCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654 568999
Q ss_pred chHHHHHHHhcccc-ccchhhcc--CCC--CCCCCCCC---CCCCCCccccCCCchhhhhhcccCCCCCCCCCCCcHHHH
Q 012338 275 YGGFREKVKGVEIR-KTIEALDQ--LKG--LPSRGDVE---PGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEA 346 (465)
Q Consensus 275 ft~Frk~~~~l~~~-~~l~~p~~--l~~--~p~~~~~~---~~~ip~l~~l~~~~~~~~~~~w~~~~~~~~~~~gGE~~A 346 (465)
|++|+++++++... .+++.|.. +.. .+...... ...+|.++++++.+.. . .......|+|||++|
T Consensus 157 f~~f~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~~~~-~------~~~~~~~~~~Ge~~A 229 (538)
T 3tvs_A 157 YQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDN-M------GFLAKINWRGGETQA 229 (538)
T ss_dssp HHHHHHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCCCCC-S------SCCCCCCCCCCHHHH
T ss_pred hHHHHHHHHhhCCCCCCCCCccccccccccCCcccccccccccCCCCHHHcCCCccc-c------cccccCCCCCCHHHH
Confidence 99999999775322 23333311 110 11100000 0234556666654311 0 000123689999999
Q ss_pred HHHHHHHHHH----HhcCCCCCCCCCCCCCCCC-CCCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCC
Q 012338 347 LQRLKKFAAE----YQAQPPKGNKDGNHDSIYG-ANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSS 421 (465)
Q Consensus 347 l~~L~~Fl~~----~l~~Y~~~~~~~~Rn~~~~-~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~ 421 (465)
+++|++|+.+ .+..|.+. ||.+.+ .++||+|||||+|||||||+|++++.+....... ..+..| -.
T Consensus 230 ~~~L~~Fl~~~~~~~l~~y~~~-----r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~--~~~~~~--~~ 300 (538)
T 3tvs_A 230 LLLLDERLKVEQHAFERGFYLP-----NQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQL--RACVRG--VQ 300 (538)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCT-----TTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHTCSSSC--CCCCSS--SC
T ss_pred HHHHHHHHHhhhhhhHhhhccc-----ccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHHhhhcc--cccccc--cc
Confidence 9999999943 37788763 565444 4789999999999999999999999876432100 000000 00
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhCCcccccccccc
Q 012338 422 GAGSNWLMFELLWRDFFRFITKKYSSAKKVVEAVP 456 (465)
Q Consensus 422 ~~~~~~l~~EL~WREF~~~i~~~~P~~~~~~~~~p 456 (465)
..+.++|++||+|||||+++++++|++.+ .+..|
T Consensus 301 ~~~~~~f~~eL~WRef~~~~~~~~p~~~~-~~~~~ 334 (538)
T 3tvs_A 301 MTGGAHITGQLIWREYFYTMSVNNPNYDR-MEGND 334 (538)
T ss_dssp CTTTTTTHHHHHHHHHHHHHHHHSSCTTS-SSSCS
T ss_pred cchHHHHHHHHHHHHHHHHHHHhCcchhh-ccCCh
Confidence 12234556999999999999999999854 34444
No 6
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=2.5e-53 Score=456.12 Aligned_cols=303 Identities=24% Similarity=0.401 Sum_probs=238.3
Q ss_pred CeEEEEEeCCCCccccHHHHHHhhcCCc------eeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q 012338 124 RASIVWFRNDLRVHDNESLNTANNESVS------VLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGS 197 (465)
Q Consensus 124 ~~~LvWFRrDLRl~DN~AL~~A~~~~~~------vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi 197 (465)
..+|||||||||++||+||.+|++.+.+ |+||||+||.++... ..|.+|+.||++||++|+++|+++|+
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~-----~~~~~r~~Fl~~sL~~L~~~L~~~G~ 103 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWM-----QVGANRWRFLQQTLEDLDNQLRKLNS 103 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCT-----TSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhccc-----CCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4559999999999999999999865444 999999999988542 57899999999999999999999999
Q ss_pred cEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCC-CCCCCCCCCCCch
Q 012338 198 DLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD-LPFKLGEMPTNYG 276 (465)
Q Consensus 198 ~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~-l~~~~g~~~~~ft 276 (465)
+|+|+.|++.++|.+|+++++|++|++|++|++++++||+.|++.|++.||+++.+++++|+++++ +.+..|++|.+|+
T Consensus 104 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vft 183 (543)
T 2wq7_A 104 RLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQ 183 (543)
T ss_dssp CCEEEESCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSHH
T ss_pred eEEEEeCCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 4456789999999
Q ss_pred HHHHHHHhccccccchhhccCCCCCCCC--C-----CCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCCcHHHHHHH
Q 012338 277 GFREKVKGVEIRKTIEALDQLKGLPSRG--D-----VEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQR 349 (465)
Q Consensus 277 ~Frk~~~~l~~~~~l~~p~~l~~~p~~~--~-----~~~~~ip~l~~l~~~~~~~~~~~w~~~~~~~~~~~gGE~~Al~~ 349 (465)
+|+++|+++..+.+++.|..++..+.+. . .....+|.++++++... . .....|+|||++|+++
T Consensus 184 ~F~~~~~~~~~~~p~~~p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~~~~---------~-~~~~~~~~Ge~~A~~~ 253 (543)
T 2wq7_A 184 KFLGIVEQLKVPKVLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPE---------E-LGPNKFPGGETEALRR 253 (543)
T ss_dssp HHHHHHTTSCCCCCCCCCCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCGG---------G-CCCCCSCCSHHHHHHH
T ss_pred HHHHHHHHccCCCCCCcchhccccccccccccccccccccCCCCHHHcCCCcc---------c-cccCCCCCCHHHHHHH
Confidence 9999998753222333332221110000 0 00023444444544321 0 1123589999999999
Q ss_pred HHHHHHHH--hcCCCCCCCCCCCCCCCC-CCCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCCCcchH
Q 012338 350 LKKFAAEY--QAQPPKGNKDGNHDSIYG-ANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSN 426 (465)
Q Consensus 350 L~~Fl~~~--l~~Y~~~~~~~~Rn~~~~-~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (465)
|++||+++ +..|.+. ||.+.. .++||+|||||+|||||||+|++++.+.+.+.. ....+.+
T Consensus 254 L~~Fl~~~~~l~~Y~~~-----Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~-----------~~~~~~~ 317 (543)
T 2wq7_A 254 MEESLKDEIWVARFEKP-----NTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQP-----------KHSQPPV 317 (543)
T ss_dssp HHHHHTCHHHHHHCCGG-----GSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHCS-----------SCCCTTT
T ss_pred HHHHHhCChhhhhhccc-----ccCccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhccc-----------cccccHH
Confidence 99999998 9999873 775433 489999999999999999999999987543310 0122334
Q ss_pred HHHHHHHHHHHHHHHHHhCCcccccccccccc
Q 012338 427 WLMFELLWRDFFRFITKKYSSAKKVVEAVPAT 458 (465)
Q Consensus 427 ~l~~EL~WREF~~~i~~~~P~~~~~~~~~p~~ 458 (465)
+|++||+|||||+++++++|++.. ....|.|
T Consensus 318 ~f~~eL~WREf~~~~~~~~P~~~~-~~~~~~~ 348 (543)
T 2wq7_A 318 SLIGQLMWREFYYTVAAAEPNFDR-MLGNVYC 348 (543)
T ss_dssp SHHHHHHHHHHHHHHHHTCTTTTS-STTCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCcccc-ccCChHh
Confidence 566999999999999999999964 4555543
No 7
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=5.4e-53 Score=446.40 Aligned_cols=284 Identities=23% Similarity=0.353 Sum_probs=229.2
Q ss_pred eEEEEEeCCCCccccHHHHHHhhc-CCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEE-
Q 012338 125 ASIVWFRNDLRVHDNESLNTANNE-SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVR- 202 (465)
Q Consensus 125 ~~LvWFRrDLRl~DN~AL~~A~~~-~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v~- 202 (465)
.+|||||||||++||+||.+|++. ..+|+||||+||.+++.+ ..|.+|+.||++||++|+++|+++|++|+|+
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~~~~-----~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~ 76 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATH-----NMSPRQAELINAQLNGLQIALAEKGIPLLFRE 76 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHT-----TCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEeCCCCcccchHHHHHHHhCCCCCEEEEEEECchhhccC-----CCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 479999999999999999999983 349999999999887542 5789999999999999999999999999999
Q ss_pred ---eCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCCCCCCCCCCCCCchHHH
Q 012338 203 ---VGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFR 279 (465)
Q Consensus 203 ---~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~l~~~~g~~~~~ft~Fr 279 (465)
.|++.++|.+|+++++|++|++|++|++++++||++|++.|++ |+++.+++++|++++++..+.|++|.+||+|+
T Consensus 77 ~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~ 154 (471)
T 1dnp_A 77 VDDFVASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFK 154 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHH
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC--cEEEEecCCEEEchhhcccCCCCCCcchHHHH
Confidence 8999999999999999999999999999999999999999976 99999999999999999988899999999999
Q ss_pred HHHHhccc---cccchhhccCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCCcHHHHHHHHHHHHHH
Q 012338 280 EKVKGVEI---RKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAE 356 (465)
Q Consensus 280 k~~~~l~~---~~~l~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~w~~~~~~~~~~~gGE~~Al~~L~~Fl~~ 356 (465)
++|++... +++++.|..+.. + ......++ ++++.. .. .....|+|||++|+++|++|+++
T Consensus 155 ~~~~~~l~~~~p~~~~~p~~~~~-~---~~~~~~~~---~l~~~~---------~~-~~~~~~~~Ge~~A~~~L~~Fl~~ 217 (471)
T 1dnp_A 155 NAWLKRLREGMPECVAAPKVRSS-G---SIEPSPSI---TLNYPR---------QS-FDTAHFPVEEKAAIAQLRQFCQN 217 (471)
T ss_dssp HHHHHHHHTCCCCCCCCCCCCTT-C---CCCCCCCC---CCCSCC---------CC-CCTTTSCCSHHHHHHHHHHHHHT
T ss_pred HHHHHhccccCCCCCCCccccCc-c---cccCCCCc---ccCCCc---------cc-cccccCCCCHHHHHHHHHHHHHH
Confidence 99987421 122222211110 0 00011112 122210 00 01235899999999999999999
Q ss_pred HhcCCCCCCCCCCCCCCCCCCCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCCCc-chHHHHHHHHHH
Q 012338 357 YQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGA-GSNWLMFELLWR 435 (465)
Q Consensus 357 ~l~~Y~~~~~~~~Rn~~~~~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~EL~WR 435 (465)
++..|.+. || .++.++||+|||||+|||||||+|++++.+...+. ..++ ...|+ +||+||
T Consensus 218 ~l~~Y~~~-----rd-~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~------------~~~~~~~~fl-~eL~WR 278 (471)
T 1dnp_A 218 GAGEYEQQ-----RD-FPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQA------------LDGGAGSVWL-NELIWR 278 (471)
T ss_dssp HHHHHHHH-----TT-CTTSCCSCCCHHHHHHTSSCHHHHHHHHHHHCGGG------------GGTSTTHHHH-HHHHHH
T ss_pred HHHHhhhc-----cC-CcCccCCCCCCHhHcCCCcCHHHHHHHHHHHhccc------------cccccHHHHH-HHHHHH
Confidence 99999863 66 47788999999999999999999999998764321 0122 34455 799999
Q ss_pred HHHHHHHHhCCccccc
Q 012338 436 DFFRFITKKYSSAKKV 451 (465)
Q Consensus 436 EF~~~i~~~~P~~~~~ 451 (465)
|||+++++++|++.+.
T Consensus 279 Ef~~~~~~~~P~~~~~ 294 (471)
T 1dnp_A 279 EFYRHLITYHPSLCKH 294 (471)
T ss_dssp HHHHHHHHHCGGGGGT
T ss_pred HHHHHHHHhCCchhcc
Confidence 9999999999998753
No 8
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=4.6e-52 Score=443.53 Aligned_cols=304 Identities=20% Similarity=0.300 Sum_probs=232.7
Q ss_pred CCCCCCeEEEEEeCCCCccccHHHHHHhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCc
Q 012338 119 GAAIRRASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSD 198 (465)
Q Consensus 119 ~~~~~~~~LvWFRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~ 198 (465)
+++.++.+|||||||||++||+||.+|++.+ +|+||||+||.++..+ ..+..+..||++||++|+++|+++|++
T Consensus 7 ~~~~~~~~l~WfrrDLRl~DN~aL~~A~~~~-~v~pvfi~dp~~~~~~-----~~~~~~~~fl~~sL~~L~~~L~~~G~~ 80 (509)
T 1u3d_A 7 GCGSGGCSIVWFRRDLRVEDNPALAAAVRAG-PVIALFVWAPEEEGHY-----HPGRVSRWWLKNSLAQLDSSLRSLGTC 80 (509)
T ss_dssp ------CEEEEESSCCCSTTCHHHHHHHHHS-CEEEEEEECGGGGTTC-----CCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCcEEEEECCCCccchhHHHHHHHhCC-CEEEEEEECchhcccC-----CcchHHHHHHHHHHHHHHHHHHHCCCe
Confidence 4556678899999999999999999999875 8999999999877542 246677779999999999999999999
Q ss_pred EEEEe-CChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCCCCCCCCCCCCCchH
Q 012338 199 LVVRV-GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGG 277 (465)
Q Consensus 199 L~v~~-G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~l~~~~g~~~~~ft~ 277 (465)
|+|+. |++.++|.+|+++++|++|++|++|++++++||++|++.|++.||+++.+++++|++++++..+.|++|++|++
T Consensus 81 L~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftp 160 (509)
T 1u3d_A 81 LITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAA 160 (509)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHH
T ss_pred EEEEeCCCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHH
Confidence 99998 69999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHhcc--ccccchhhccCCCCCCCCCCCCCCCCCccccCCCchh-hhhhcccCCCCCCCCCCCcHHHHHHHHHHHH
Q 012338 278 FREKVKGVE--IRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSA-AMSQVWHGGKPAANSMKGGETEALQRLKKFA 354 (465)
Q Consensus 278 Frk~~~~l~--~~~~l~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~-~~~~~w~~~~~~~~~~~gGE~~Al~~L~~Fl 354 (465)
|++++.+.. .+.+++.|.. ++.. . ...++++++++.+.. .... . .....|+|||++|+++|++|+
T Consensus 161 f~r~~~~~~~~~~~~~~~p~~---~~~~-~---~~~~~~~~l~~~~~~~~~~~----~-~~~~~~~~Ge~~A~~~L~~Fl 228 (509)
T 1u3d_A 161 FWERCLSMPYDPESPLLPPKK---IISG-D---VSKCVADPLVFEDDSEKGSN----A-LLARAWSPGWSNGDKALTTFI 228 (509)
T ss_dssp HHHHHHTCSSCCCCCCCCCSC---CCBT-T---GGGSSCCCCCCCCHHHHHHH----T-THHHHCCCSHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCCCCCccc---cCcc-c---cCCCChhHhCCCcccccchh----h-hccccCCCcHHHHHHHHHHHH
Confidence 999988642 1111221111 1100 0 011233444443210 0000 0 000138999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCCCcccChhhhccCcCCHHHHHHHHHHhhh----hhhccccCCCCCCCCCCcchHHHHH
Q 012338 355 AEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTAT----SISAASKWNDGESGSSGAGSNWLMF 430 (465)
Q Consensus 355 ~~~l~~Y~~~~~~~~Rn~~~~~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~ 430 (465)
++++..|.+ +||. ++.++||+|||||+|||||||+|++++.+... +... ....+.++|++
T Consensus 229 ~~~l~~Y~~-----~Rd~-p~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~----------~~~~s~~~fl~ 292 (509)
T 1u3d_A 229 NGPLLEYSK-----NRRK-ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNE----------AGEESVNLFLK 292 (509)
T ss_dssp TTGGGGTTT-----TTTC-SSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCH----------HHHHHHHHHHH
T ss_pred HHHHHhhhh-----ccCC-CCCCCCCCCChhhccCCCCHHHHHHHHHHHhhhhcccccc----------cccchHHHHHH
Confidence 999999986 3775 66678999999999999999999999976431 1000 01223455669
Q ss_pred HHHHHHHHHHHHHhCCccc-----ccccccc
Q 012338 431 ELLWRDFFRFITKKYSSAK-----KVVEAVP 456 (465)
Q Consensus 431 EL~WREF~~~i~~~~P~~~-----~~~~~~p 456 (465)
||+|||||+++++++|++. ..++.+|
T Consensus 293 eL~WREf~~~~~~~~p~~~~~~~~~~~~~lp 323 (509)
T 1u3d_A 293 SIGLREYSRYISFNHPYSHERPLLGHLKFFP 323 (509)
T ss_dssp HHHHHHHHHHHHHSSTTTTTSCSCCTTTTCC
T ss_pred HHHHHHHHHHHHHhCccccccchhhhhccCC
Confidence 9999999999999999853 3356677
No 9
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-50 Score=425.09 Aligned_cols=257 Identities=25% Similarity=0.352 Sum_probs=214.6
Q ss_pred EEEEEeCCCCccccHHHHHHhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEeCC
Q 012338 126 SIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGK 205 (465)
Q Consensus 126 ~LvWFRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v~~G~ 205 (465)
+|||||||||++||+||.+|++.+.+|+||||+||.+++.+ ...|.+|+.||++||++|+++|+++|++|+|+.|+
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~----~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~g~ 78 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINN----PYKSEFAVSFMINSLLELDDELRKKGSRLNVFFGE 78 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHSSC----TTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEESC
T ss_pred EEEEeCCCCccchhHHHHHHHhcCCCEEEEEEeChhhhccC----CcCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 79999999999999999999998889999999999887643 12789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCCCCCCCCCCCCCchHHHHHHHhc
Q 012338 206 PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGV 285 (465)
Q Consensus 206 ~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~l~~~~g~~~~~ft~Frk~~~~l 285 (465)
+.++|.+|++ +|++|++|++|++++++||++|++.|++.||+++.+++++|++++++ +|++||+|+++|++.
T Consensus 79 ~~~~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~------~y~vftpf~~~~~~~ 150 (440)
T 2e0i_A 79 AEKVVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF------HHRNFTSFYNEVSKV 150 (440)
T ss_dssp HHHHHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC------CCSSHHHHHHHHTTS
T ss_pred HHHHHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccccc------CcccCcHHHHHHHHh
Confidence 9999999999 99999999999999999999999999999999999999999999987 578899999999874
Q ss_pred cccc-c--chhhccCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCC
Q 012338 286 EIRK-T--IEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPP 362 (465)
Q Consensus 286 ~~~~-~--l~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~w~~~~~~~~~~~gGE~~Al~~L~~Fl~~~l~~Y~ 362 (465)
.... + ++.|. .++. +. .+.++ + . ....|+|||++|+++|+ |+++++..|
T Consensus 151 ~~~~p~~~~~~~~---~~~~-----p~---~~~~l---p-----~-------~~~~~~~Ge~~A~~~L~-Fl~~~l~~Y- 202 (440)
T 2e0i_A 151 KVREPETMEGSFD---VTDS-----SM---NVDFL---L-----T-------FKKIESPLFRGGRREGL-YLLHRNVDF- 202 (440)
T ss_dssp CCCCCCCCCCCBC---CCSS-----SB---CGGGG---G-----G-------TCCCCCTTCCCSHHHHH-HHHTCCCCG-
T ss_pred cccccccCCCCcc---cCCC-----cc---hhhhC---C-----c-------cccCCCCCHHHHHHHHH-HHHhhhhcC-
Confidence 1111 1 11110 0110 00 01111 0 0 01257999999999999 999999999
Q ss_pred CCCCCCCCCCCCCCCCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 012338 363 KGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFIT 442 (465)
Q Consensus 363 ~~~~~~~Rn~~~~~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EL~WREF~~~i~ 442 (465)
+. ||. ++.++||+|||||+|||||||+|++++ .. ...|+ +||+|||||++++
T Consensus 203 ~~-----rd~-p~~~~tS~LSPyL~~G~lSpr~v~~~~----~~-----------------~~~fl-~eL~WREf~~~~~ 254 (440)
T 2e0i_A 203 RR-----RDY-PAENNNYRLSPHLKFGTISMREAYYTQ----KG-----------------KEEFV-RELYWRDFFTLLA 254 (440)
T ss_dssp GG-----TTC-TTTTCCCCCHHHHHTTSSCHHHHHHHS----TT-----------------CHHHH-HHHHHHHHHHHHH
T ss_pred Cc-----CCC-ccccCCCCccHhHhCCCCCHHHHHHHh----cC-----------------HHHHH-HHHHHHHHHHHHH
Confidence 73 774 678999999999999999999999987 10 22455 8999999999999
Q ss_pred HhCCcccc
Q 012338 443 KKYSSAKK 450 (465)
Q Consensus 443 ~~~P~~~~ 450 (465)
+++|++..
T Consensus 255 ~~~P~~~~ 262 (440)
T 2e0i_A 255 YYNPHVFG 262 (440)
T ss_dssp HHCGGGTT
T ss_pred HhCCCccc
Confidence 99999865
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=6.8e-50 Score=417.20 Aligned_cols=261 Identities=25% Similarity=0.379 Sum_probs=217.3
Q ss_pred eEEEEEeCCCCccccHHHHHHhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEeC
Q 012338 125 ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVG 204 (465)
Q Consensus 125 ~~LvWFRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v~~G 204 (465)
.+|||||||||++||+||.+|++.+ +|+||||+||.++. . |.+|+.||++||++|+++|+++|++|+|+.|
T Consensus 3 ~~l~WfrrDlRl~Dn~aL~~A~~~~-~v~~vfi~d~~~~~-------~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~g 73 (420)
T 2j07_A 3 PLLVWHRGDLRLHDHPALLEALARG-PVVGLVVLDPNNLK-------T-TPRRRAWFLENVRALREAYRARGGALWVLEG 73 (420)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHTTS-CEEEEEEECHHHHS-------S-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEeCCCCCccccHHHHHHHhCC-CEEEEEEECCcccc-------C-CHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5799999999999999999999876 99999999998763 4 8899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCCCCCCCCCCCCCchHHHHHHHh
Q 012338 205 KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKG 284 (465)
Q Consensus 205 ~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~l~~~~g~~~~~ft~Frk~~~~ 284 (465)
++.++|.+|+++++++.|++|++|++++++||++|++.| ||+++.+++++|+++++ |++|.+||+|+|+|+
T Consensus 74 ~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i~~~~~~~~~l~~~~~-----~~~~~~~t~f~k~~~- 144 (420)
T 2j07_A 74 LPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL---PVPLHLLPAPHLLPPDL-----PRAYRVYTPFSRLYR- 144 (420)
T ss_dssp CHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SSCEEEECCCCSSCTTC-----SSCCSSHHHHHTTCC-
T ss_pred CHHHHHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc---CCeEEEeCCCEEEccCC-----CCccccccHHHHHHh-
Confidence 999999999999999999999999999999999999998 99999999999999987 789999999999886
Q ss_pred ccccccchhhccCCCCCCCCCCCCCCCCCccccCCCchhhhhhcccCCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCC
Q 012338 285 VEIRKTIEALDQLKGLPSRGDVEPGDIPSLLDLGLSQSAAMSQVWHGGKPAANSMKGGETEALQRLKKFAAEYQAQPPKG 364 (465)
Q Consensus 285 l~~~~~l~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~~~~~~~w~~~~~~~~~~~gGE~~Al~~L~~Fl~~~l~~Y~~~ 364 (465)
.+ ..|++.|..+ + +| +++.++.. .+ .....|+|||++|+++|++|+++++..|.+.
T Consensus 145 ~~-~~p~~~p~~~---~---------~p-~~~~~l~~---------~~-~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~ 200 (420)
T 2j07_A 145 GA-APPLPPPEAL---P---------KG-PEEGEIPR---------ED-PGLPLPEPGEEAALAGLRAFLEAKLPRYAEE 200 (420)
T ss_dssp CC-CCCCCCCSSC---C---------CC-CCCCCCCC---------CC-CSSCCCCCSHHHHHHHHHHHHHHTGGGHHHH
T ss_pred hc-cCCCCCcccc---C---------CC-CccccCCC---------cc-cccccCCCcHHHHHHHHHHHHHHHHhhhhhc
Confidence 22 2233322211 0 11 11111110 01 1123589999999999999999999999863
Q ss_pred CCCCCCCCCCCCCCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q 012338 365 NKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLMFELLWRDFFRFITKK 444 (465)
Q Consensus 365 ~~~~~Rn~~~~~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EL~WREF~~~i~~~ 444 (465)
||. ++.++||+|||||+|||||||+|++++.+... ++...| ++||+|||||++++++
T Consensus 201 -----rd~-p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~----------------~~~~~f-~~eL~WREf~~~~~~~ 257 (420)
T 2j07_A 201 -----RDR-LDGEGGSRLSPYFALGVLSPRLAAWEAERRGG----------------EGARKW-VAELLWRDFSYHLLYH 257 (420)
T ss_dssp -----TTC-TTCTTSCCCHHHHHTTSSCHHHHHHHHHHHCS----------------HHHHHH-HHHHHHHHHHHHHHHH
T ss_pred -----cCC-CCccCCCCcchhhcCCccCHHHHHHHHHHHhc----------------cCHHHH-HHHHHHHHHHHHHHHh
Confidence 674 67789999999999999999999999987531 112334 5899999999999999
Q ss_pred CCcccc
Q 012338 445 YSSAKK 450 (465)
Q Consensus 445 ~P~~~~ 450 (465)
+|++..
T Consensus 258 ~p~~~~ 263 (420)
T 2j07_A 258 FPWMAE 263 (420)
T ss_dssp CGGGGT
T ss_pred CCcccc
Confidence 999854
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=3.6e-49 Score=419.33 Aligned_cols=299 Identities=17% Similarity=0.186 Sum_probs=220.6
Q ss_pred CCCCeEEEEEeCCCCccccHHHHHHhh----cCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q 012338 121 AIRRASIVWFRNDLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARG 196 (465)
Q Consensus 121 ~~~~~~LvWFRrDLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~G 196 (465)
..++.+|||||||||++||+||.+|++ .+.+|+||||+||.++.. ..+.+|++||++||++|+++|+++|
T Consensus 35 ~~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~------~~~~~r~~FL~~sL~dL~~~L~~lG 108 (506)
T 3umv_A 35 KPGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLL------SARRRQLGFLLRGLRRLAADAAARH 108 (506)
T ss_dssp CTTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGG------GCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhcc------CCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 355789999999999999999999986 467999999999985431 4689999999999999999999999
Q ss_pred CcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHH--hcCCeEEEeeCCeeeeCCCCCCCCCCCCCC
Q 012338 197 SDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK--DEGIEVKYFWGSTLYHLDDLPFKLGEMPTN 274 (465)
Q Consensus 197 i~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~--~~gI~v~~~~~~~L~~p~~l~~~~g~~~~~ 274 (465)
++|+|++|++.++ .+|+++++|++||++.++...+++||++|++.|+ +.||+++.|++++|++++++..+. .|.+
T Consensus 109 ~~L~v~~G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~~v~~~~--~~~~ 185 (506)
T 3umv_A 109 LPFFLFTGGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKM--EYSA 185 (506)
T ss_dssp CCEEEESSCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHHHHCSSC--CSSH
T ss_pred CceEEEecChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcccccCCC--CCCc
Confidence 9999999999999 9999999999999988877777789999999997 789999999999999998886554 3555
Q ss_pred chHHHHHHHhccccccc-hhhccCCCCCCCCCCCCCCCCCccccCCCch-hhhhhcccCCCCCCCCCCCcHHHHHHHH--
Q 012338 275 YGGFREKVKGVEIRKTI-EALDQLKGLPSRGDVEPGDIPSLLDLGLSQS-AAMSQVWHGGKPAANSMKGGETEALQRL-- 350 (465)
Q Consensus 275 ft~Frk~~~~l~~~~~l-~~p~~l~~~p~~~~~~~~~ip~l~~l~~~~~-~~~~~~w~~~~~~~~~~~gGE~~Al~~L-- 350 (465)
+| |++++.+.... .+ +.|. .+..... ....+. .+..... ..+.. ..........|+|||++|+++|
T Consensus 186 ~t-~~~~~~~~~~~-~~~~~p~----~~~~~~~-~~~~~~--~~~~~~l~~~~~~-~~~~~~~~~~~~~Ge~~A~~~L~~ 255 (506)
T 3umv_A 186 KT-FRGKVSKVMDE-YLVEFPE----LPAVVPW-DREQPE--GVDWDALIARVCS-EAENVPEIDWCEPGEEAAIEALLG 255 (506)
T ss_dssp HH-HHHHHHTTHHH-HSCCCCC----CCCCCCC-CSCCCC--CCCHHHHHHHHHH-TSCCCCCCCSSCCSHHHHHHHHHC
T ss_pred cC-HHHHHHHhccc-cccCCCC----CCCcccc-cccccc--ccChhhhhhhhcc-ccccccccCCCCCCHHHHHHHHHh
Confidence 54 66666553210 00 0010 0000000 000010 0000000 00000 0001111224799999999999
Q ss_pred --HHHHHHHhcCCCCCCCCCCCCCCCCC-CCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCCCcchHH
Q 012338 351 --KKFAAEYQAQPPKGNKDGNHDSIYGA-NFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNW 427 (465)
Q Consensus 351 --~~Fl~~~l~~Y~~~~~~~~Rn~~~~~-~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (465)
++|+.+++..|.+ +||. +.. ++||+|||||+|||||||+|++++.+..... ..+.+.
T Consensus 256 ~~~~Fl~~~l~~Y~~-----~Rd~-p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~~~--------------~~~~~~ 315 (506)
T 3umv_A 256 SKDGFLTKRIKSYET-----DRND-PTKPRALSGLSPYLHFGHISAQRCALEAKKCRHLS--------------PKSVDA 315 (506)
T ss_dssp TTTCHHHHTGGGHHH-----HTTC-TTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHGGGS--------------HHHHHH
T ss_pred hHHHHHHhHHhhhcc-----ccCC-ccccCCCccCCHHHhCCCcCHHHHHHHHHHHHhhc--------------cccHHH
Confidence 9999999999986 3775 444 7899999999999999999999998764321 123445
Q ss_pred HHHHHHHH-HHHHHHHHhCCccccccccccccc
Q 012338 428 LMFELLWR-DFFRFITKKYSSAKKVVEAVPATA 459 (465)
Q Consensus 428 l~~EL~WR-EF~~~i~~~~P~~~~~~~~~p~~~ 459 (465)
|++||+|| |||+++++++|++.. ....+.|+
T Consensus 316 f~~eL~WRREf~~~~~~~~p~~~~-~~~~~~w~ 347 (506)
T 3umv_A 316 FLEELVVRRELADNFCYYQPQYDS-LSGAWEWA 347 (506)
T ss_dssp HHHHHTHHHHHHHHHHHHCTTTTS-GGGSCHHH
T ss_pred HHHHHHHhHHHHHHHHHhCcchhh-hhccchhh
Confidence 66999996 999999999999854 45555554
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=6.9e-49 Score=416.58 Aligned_cols=294 Identities=17% Similarity=0.195 Sum_probs=220.6
Q ss_pred eEEEEEeCCCCccccHHHHHHhh----cCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEE
Q 012338 125 ASIVWFRNDLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLV 200 (465)
Q Consensus 125 ~~LvWFRrDLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~ 200 (465)
.+|||||||||++||+||.+|++ .+.+|+||||+||.++. .+.+|+.||++||++|+++|+++|++|+
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~--------~~~~r~~Fl~~sL~~L~~~L~~~G~~L~ 109 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE--------AGIRQYEFMLKGLQELEVSLSRKKIPSF 109 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG--------SCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc--------cCHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 78999999999999999999985 36789999999998763 5889999999999999999999999999
Q ss_pred EEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCCCCCCCCCCCCCchHHHH
Q 012338 201 VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFRE 280 (465)
Q Consensus 201 v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~l~~~~g~~~~~ft~Frk 280 (465)
|+.|++.++|.+|+++++|++|+++++|+++++++|++|++.| ||+++.+++++|++++++..+.+ |++|| |++
T Consensus 110 v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi~~~~~~~~~l~~~~~~~~~~~--~~v~t-f~~ 183 (482)
T 2xry_A 110 FLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SIPFFEVDAHNVVPCWEASQKHE--YAAHT-FRP 183 (482)
T ss_dssp EEESCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CSCEEEECCSSSSCHHHHCSSCC--SSHHH-HHH
T ss_pred EEeCCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CCEEEEEeCCEEccccccccCCC--Cceec-chH
Confidence 9999999999999999999999999999999999999998776 99999999999999988766543 88887 666
Q ss_pred HHHhccc--cccchhhccCCCCCCCCCC-CCCCCCC-ccccCCCchhhhhh-cccC-C--C-CC--CCCCCCcHHHHHHH
Q 012338 281 KVKGVEI--RKTIEALDQLKGLPSRGDV-EPGDIPS-LLDLGLSQSAAMSQ-VWHG-G--K-PA--ANSMKGGETEALQR 349 (465)
Q Consensus 281 ~~~~l~~--~~~l~~p~~l~~~p~~~~~-~~~~ip~-l~~l~~~~~~~~~~-~w~~-~--~-~~--~~~~~gGE~~Al~~ 349 (465)
++++... ..+.+.+ .+.+.+..+ .+...+. ++.++.+. .+.. .|.. + . .. ...|+|||++|+++
T Consensus 184 ~~~~~~~~~~~~~p~~---~p~~~~~~lp~~~~~~~~~~~l~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~Ge~~A~~~ 258 (482)
T 2xry_A 184 KLYALLPEFLEEFPEL---EPNSVTPELSAGAGMVETLSDVLETG--VKALLPERALLKNKDPLFEPWHFEPGEKAAKKV 258 (482)
T ss_dssp HHHHHHHHHCCCCCCC---CCCSSCCC---------CHHHHHHHH--HHHHGGGCCBCTTSCBCCCTTSCCCSHHHHHHH
T ss_pred HHHHHHHhhccccCCC---CCCCCccccCCccchhhhhhhhcccC--CCCCcchhhhccccccccccCCCCCcHHHHHHH
Confidence 6665210 0000100 111100000 0001111 11111100 0000 0000 0 0 00 11589999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccChhhhccCcCCHHHHHHHHHHhhhhhhccccCCCCCCCCCCcchHHHH
Q 012338 350 LKKFAAEYQAQPPKGNKDGNHDSIYGANFSCKISPWLAMGCLSPRSMFDELKKTATSISAASKWNDGESGSSGAGSNWLM 429 (465)
Q Consensus 350 L~~Fl~~~l~~Y~~~~~~~~Rn~~~~~~~TS~LSPYL~~G~ISpR~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 429 (465)
|++|+++++..|.+. ||. ++.++||+|||||+|||||||+|++++.+... ...+.++|+
T Consensus 259 L~~Fl~~~l~~Y~~~-----Rd~-p~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~---------------~~~~~e~fl 317 (482)
T 2xry_A 259 MESFIADRLDSYGAL-----RND-PTKNMLSNLSPYLHFGQISSQRVVLEVEKAES---------------NPGSKKAFL 317 (482)
T ss_dssp HHHHHHHTHHHHHHH-----TTC-TTSCCSCCCHHHHHTTSSCHHHHHHHHHHCCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhhhccc-----cCC-CCccCCCCcCHHHhCCccCHHHHHHHHHHhhc---------------ccccHHHHH
Confidence 999999999999863 775 56789999999999999999999999977521 022445667
Q ss_pred HHHH-HHHHHHHHHHhCCccccccccccccc
Q 012338 430 FELL-WRDFFRFITKKYSSAKKVVEAVPATA 459 (465)
Q Consensus 430 ~EL~-WREF~~~i~~~~P~~~~~~~~~p~~~ 459 (465)
+||+ |||||+++++++|++. ..+++|.|+
T Consensus 318 ~ELi~WREf~~~~~~~~P~~~-~~~~~~~w~ 347 (482)
T 2xry_A 318 DEILIWKEISDNFCYYNPGYD-GFESFPSWA 347 (482)
T ss_dssp HHHTHHHHHHHHHHHHCTTTT-SGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhCCccc-ccccchHHH
Confidence 9997 9999999999999995 477887774
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=99.98 E-value=2.6e-32 Score=287.46 Aligned_cols=310 Identities=15% Similarity=0.162 Sum_probs=206.7
Q ss_pred CCCCCCCC-eEEEEEeCCCCccccHHHHHHhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Q 012338 117 NNGAAIRR-ASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQAR 195 (465)
Q Consensus 117 ~~~~~~~~-~~LvWFRrDLRl~DN~AL~~A~~~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~ 195 (465)
++.++.++ .+++|.-.|.-..++++|..+.... .+|++++...... +...+++|+.|++.||++|+++|+++
T Consensus 7 ~~~~~~~~~~~~~~ilgdQL~~~~~~~~~~~~~~---~~~~~~E~~~~~~----~~~~h~~Ki~~l~saMr~fa~~L~~~ 79 (522)
T 3zxs_A 7 HHHHGIRMLTRLILVLGDQLSDDLPALRAADPAA---DLVVMAEVMEEGT----YVPHHPQKIALILAAMRKFARRLQER 79 (522)
T ss_dssp --------CCCEEECCTTCCCTTCHHHHTCCTTT---CEEEEECCHHHHH----SSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhhhheeEEeecccCCCccchhhhcCCCC---CEEEEEEechHhc----cCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 34456666 4589999999999999997643222 2455665433321 13568999999999999999999999
Q ss_pred CCcEEEEe-------CChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeCC-eeeeCCCCCC-
Q 012338 196 GSDLVVRV-------GKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGS-TLYHLDDLPF- 266 (465)
Q Consensus 196 Gi~L~v~~-------G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~-~L~~p~~l~~- 266 (465)
|++|+++. |++.++|.+++++++++.|+++ +|++.++|++|++. ||+++.+++. +|++++++..
T Consensus 80 G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~----gi~v~~~~~~~fL~~~~e~~~~ 152 (522)
T 3zxs_A 80 GFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM----PLPVRFLPDDRFLCPADEFARW 152 (522)
T ss_dssp TCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS----SSCEEEECCCCSSSCHHHHHHH
T ss_pred CCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc----CCcEEEeCCCCcccCHHHHHHh
Confidence 99999998 8999999999999999999998 67888888888844 9999999987 6889888863
Q ss_pred -CCCCCCCCchHHHHHHHhc----cc-cccchh---hc--cCCCCCCCCCCCCCCCCCccccCCCc-----hhhhhhccc
Q 012338 267 -KLGEMPTNYGGFREKVKGV----EI-RKTIEA---LD--QLKGLPSRGDVEPGDIPSLLDLGLSQ-----SAAMSQVWH 330 (465)
Q Consensus 267 -~~g~~~~~ft~Frk~~~~l----~~-~~~l~~---p~--~l~~~p~~~~~~~~~ip~l~~l~~~~-----~~~~~~~w~ 330 (465)
+.+++|.+ ++|||.+++. +. .+|+.- .+ .-++.|.. . .+|....+.-+. ...+.+...
T Consensus 153 ~~~~k~~~m-e~FYR~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~--~---~~p~~~~~~~d~~~~~v~~~v~~~~~ 226 (522)
T 3zxs_A 153 TEGRKQLRM-EWFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPD--L---LRPRPLRFEPDAEVRAVLDLVEARFP 226 (522)
T ss_dssp HTTCSSCCH-HHHHHHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCC--T---TCCCCCCCCCCHHHHHHHHHHHHHCT
T ss_pred hcCCCCeEe-eHHHHHHHHHhCcCCCCCCCCCCccCccccccccCCCC--C---CCCCCCCCCCchhHHHHHHHHHHhcc
Confidence 55666765 6999999852 22 233320 00 00111111 1 111111000000 000000000
Q ss_pred --CCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC---CCcccChhhhccCcCCHHHHHHHHHHhhh
Q 012338 331 --GGKPAANSMKGGETEALQRLKKFAAEYQAQPPKGNKDGNHDSIYGA---NFSCKISPWLAMGCLSPRSMFDELKKTAT 405 (465)
Q Consensus 331 --~~~~~~~~~~gGE~~Al~~L~~Fl~~~l~~Y~~~~~~~~Rn~~~~~---~~TS~LSPYL~~G~ISpR~v~~~l~~~~~ 405 (465)
.|......|++||++|+++|++|+.+++..|... ||.+... .+||+|||||++|+||||+|++++.+...
T Consensus 227 ~~~G~~~~~~~~~ge~~A~~~L~~Fl~~rl~~Y~~~-----rD~~~~~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~ 301 (522)
T 3zxs_A 227 RHFGRLRPFHWATDRAEALRALDHFIRESLPRFGDE-----QDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWR 301 (522)
T ss_dssp TSSSCCCSCCCCCSHHHHHHHHHHHHHHTGGGTTTT-----TTCCBTTBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCcCccccCCCCCCHHHHHHHHHHHHHhhhhhhhhh-----ccCcccCCCCCCcccccHHHhCCCcCHHHHHHHHHHHHH
Confidence 1222345799999999999999999999988763 5543322 36999999999999999999999987654
Q ss_pred hhhccccCCCCCCCCCCcchHHHHHHH-HHHHHHHHHHHhC-Ccccc-----cccccccccccc
Q 012338 406 SISAASKWNDGESGSSGAGSNWLMFEL-LWRDFFRFITKKY-SSAKK-----VVEAVPATACTG 462 (465)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~l~~EL-~WREF~~~i~~~~-P~~~~-----~~~~~p~~~~~~ 462 (465)
... .+.++...|+ +|| +|||||+++++++ |++.. ..+.+|.+-++|
T Consensus 302 ~~~----------~~~~~~e~fi-rellgWREF~~~l~~~~~P~~~~~n~~~~~~~l~~~~w~G 354 (522)
T 3zxs_A 302 EGR----------APLNAVEGFI-RQILGWREYVRGIWTLSGPDYIRSNGLGHSAALPPLYWGK 354 (522)
T ss_dssp TTS----------SCHHHHHHHH-HHHHTHHHHHHHHHHHHGGGGGGCCTTCCCBCCCGGGGTC
T ss_pred hcC----------CchhhHHHHH-HHHHHHHHHHHHHHHHhCccccccccccccccchHHHhcC
Confidence 310 0112234455 777 5999999999986 87744 234566544554
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=90.08 E-value=2.5 Score=36.32 Aligned_cols=85 Identities=19% Similarity=0.093 Sum_probs=61.0
Q ss_pred CC-CccccHHHHHHhh----cCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEE----Ee
Q 012338 133 DL-RVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV----RV 203 (465)
Q Consensus 133 DL-Rl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v----~~ 203 (465)
|. --....+|..|.. .+..|..|++.++... .......-..+.|.++.+.+++.|+++.+ ..
T Consensus 32 D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~ 102 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR---------TKDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRG 102 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT---------SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc---------ccHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 54 4445566766653 3678999999875421 12333445667788888889999988754 34
Q ss_pred CChHHHHHHHHHHhCCCEEEEec
Q 012338 204 GKPETVLVELAKAIGADAVYAHR 226 (465)
Q Consensus 204 G~~~~vL~~L~~~~~a~~V~~n~ 226 (465)
|++.+.|.+.+++.+++-|+.-.
T Consensus 103 G~~~~~I~~~a~~~~~DLIV~G~ 125 (155)
T 3dlo_A 103 KEPPDDIVDFADEVDAIAIVIGI 125 (155)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCHHHHHHHHHHHcCCCEEEECC
Confidence 99999999999999999998864
No 15
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=88.38 E-value=2.1 Score=36.42 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=57.8
Q ss_pred cccHHHHHHh----hcCCceeeEEEeCCCccCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHhCCC---cEEEEe-C
Q 012338 137 HDNESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTGP----YRASFLIESVSDLRKNLQARGS---DLVVRV-G 204 (465)
Q Consensus 137 ~DN~AL~~A~----~~~~~vl~vyi~dp~~~~~~~~g~~~~~~----~r~~FllesL~dL~~~L~~~Gi---~L~v~~-G 204 (465)
....+|..|. ..+..|..++++++...... ..... ....-..+.|.++.+.+++.|+ ...+.. |
T Consensus 29 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g 104 (156)
T 3fg9_A 29 SSERAFRYATTLAHDYDVPLGICSVLESEDINIF----DSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGG 104 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCC----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcccc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence 3445666654 34678999999987543210 01111 1223445667777777888887 346677 9
Q ss_pred ChHHHHHHH-HHHhCCCEEEEecc
Q 012338 205 KPETVLVEL-AKAIGADAVYAHRE 227 (465)
Q Consensus 205 ~~~~vL~~L-~~~~~a~~V~~n~e 227 (465)
++.+.|.+. +++.+++-|+.-..
T Consensus 105 ~~~~~I~~~~a~~~~~DlIV~G~~ 128 (156)
T 3fg9_A 105 DVDDVILEQVIPEFKPDLLVTGAD 128 (156)
T ss_dssp CHHHHHHHTHHHHHCCSEEEEETT
T ss_pred CHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999998 99999999988654
No 16
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=88.27 E-value=4.8 Score=33.66 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=62.7
Q ss_pred CCCccccHHHHHHhh----cCCceeeEEEeCCCccCC-CCCCCC--CCCHHHHHHHHHHHHHHHHHHHhCCC---cEEEE
Q 012338 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGK-SSSGFD--KTGPYRASFLIESVSDLRKNLQARGS---DLVVR 202 (465)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~-~~~g~~--~~~~~r~~FllesL~dL~~~L~~~Gi---~L~v~ 202 (465)
|.--....+|..|+. .+..|..++++++..... ...+.. ...........++.+.|++-.++.|+ ...+.
T Consensus 14 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (150)
T 3tnj_A 14 DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGIDPAHRWLV 93 (150)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEe
Confidence 333345567766653 467899999988643210 000000 01112223333344444444444454 47888
Q ss_pred eCChHHHHHHHHHHhCCCEEEEeccC-ChhHHHHHHHHHHHHHhcCCeEEEe
Q 012338 203 VGKPETVLVELAKAIGADAVYAHREV-SHDEVKSEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 203 ~G~~~~vL~~L~~~~~a~~V~~n~e~-~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (465)
.|++.+.|.+.+++.+++-|+.-..- .....-.-....+.+...+++|..+
T Consensus 94 ~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 94 WGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp ESCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEE
T ss_pred cCCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEE
Confidence 99999999999999999999886532 1111100112234455557777644
No 17
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=88.23 E-value=2.5 Score=35.28 Aligned_cols=95 Identities=11% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCCccccHHHHHHhh----cCCceeeEEEeCCCccCCCCCC-C-CCCCHHHHHHHHHHHHHHHHHHHhCCC---cEEEEe
Q 012338 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSG-F-DKTGPYRASFLIESVSDLRKNLQARGS---DLVVRV 203 (465)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~g-~-~~~~~~r~~FllesL~dL~~~L~~~Gi---~L~v~~ 203 (465)
|.--....+|..|.. .+..|..++++++........+ . ...-.....-..+.|.++.+.+++.|+ ...+..
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 92 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPNLKTEISY 92 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEec
Confidence 444445566766653 4678999999886543210000 0 000011223445567777777777777 557788
Q ss_pred CChHHHHHH-HHHHhCCCEEEEecc
Q 012338 204 GKPETVLVE-LAKAIGADAVYAHRE 227 (465)
Q Consensus 204 G~~~~vL~~-L~~~~~a~~V~~n~e 227 (465)
|++.+.|.+ .+++.+++-|+.-..
T Consensus 93 g~~~~~I~~~~a~~~~~dliV~G~~ 117 (146)
T 3s3t_A 93 GIPKHTIEDYAKQHPEIDLIVLGAT 117 (146)
T ss_dssp ECHHHHHHHHHHHSTTCCEEEEESC
T ss_pred CChHHHHHHHHHhhcCCCEEEECCC
Confidence 999999999 999999999988753
No 18
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=88.19 E-value=3.6 Score=34.06 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=56.0
Q ss_pred ccHHHHHHh----hcCCceeeEEEeCCCccCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC-----cEEEEeCChH
Q 012338 138 DNESLNTAN----NESVSVLPVYCFDPRDYGKS-SSGFDKTGPYRASFLIESVSDLRKNLQARGS-----DLVVRVGKPE 207 (465)
Q Consensus 138 DN~AL~~A~----~~~~~vl~vyi~dp~~~~~~-~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi-----~L~v~~G~~~ 207 (465)
...+|..|. ..+..|..++++++...... ..++............+.++.+++.+++.|. ...+..|++.
T Consensus 16 s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~g~~~ 95 (143)
T 3fdx_A 16 TERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAEGSPK 95 (143)
T ss_dssp CTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEESCHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecChH
Confidence 345665554 34678999999986432100 0000000011223455667777777777775 4567889999
Q ss_pred HHHHHHHHHhCCCEEEEecc
Q 012338 208 TVLVELAKAIGADAVYAHRE 227 (465)
Q Consensus 208 ~vL~~L~~~~~a~~V~~n~e 227 (465)
+.|.+.+++.+++-|++-..
T Consensus 96 ~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 96 DKILALAKSLPADLVIIASH 115 (143)
T ss_dssp HHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999998765
No 19
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=84.65 E-value=7.7 Score=32.08 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=59.2
Q ss_pred cccHHHHHHhh----cCCceeeEEEeCCCc-cCCCC----CC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCc-----EEE
Q 012338 137 HDNESLNTANN----ESVSVLPVYCFDPRD-YGKSS----SG-FDKTGPYRASFLIESVSDLRKNLQARGSD-----LVV 201 (465)
Q Consensus 137 ~DN~AL~~A~~----~~~~vl~vyi~dp~~-~~~~~----~g-~~~~~~~r~~FllesL~dL~~~L~~~Gi~-----L~v 201 (465)
....+|..|+. .+..|..++++++.. +.... .+ ..........-..+.|..+.+.+++.|++ ..+
T Consensus 14 ~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 93 (147)
T 3hgm_A 14 GAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKVRAFV 93 (147)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEE
Confidence 34456666543 467899999988643 10000 00 00112223345566778888888888854 566
Q ss_pred EeCChHHHHHHHHHHhCCCEEEEecc
Q 012338 202 RVGKPETVLVELAKAIGADAVYAHRE 227 (465)
Q Consensus 202 ~~G~~~~vL~~L~~~~~a~~V~~n~e 227 (465)
..|++.+.|.+.+++.+++-|++-..
T Consensus 94 ~~g~~~~~I~~~a~~~~~dliV~G~~ 119 (147)
T 3hgm_A 94 KGGRPSRTIVRFARKRECDLVVIGAQ 119 (147)
T ss_dssp EESCHHHHHHHHHHHTTCSEEEECSS
T ss_pred ecCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 78999999999999999999988643
No 20
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=84.55 E-value=3.8 Score=35.25 Aligned_cols=121 Identities=9% Similarity=0.075 Sum_probs=67.6
Q ss_pred CCCccccHHHHHHhh----cCCceeeEEEeCCCccCCCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHHhCCC
Q 012338 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFD-----------KTGPYRASFLIESVSDLRKNLQARGS 197 (465)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~g~~-----------~~~~~r~~FllesL~dL~~~L~~~Gi 197 (465)
|.--....+|..|.. .+..|..++++++........++. ........-..+.|+++.+.+++.|+
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 92 (170)
T 2dum_A 13 DFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFR 92 (170)
T ss_dssp CSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 443444567777754 356788899887643210000000 01111122334556667777766676
Q ss_pred cE----EEEeCChHHHHHHHHHHhCCCEEEEeccC-ChhHHH-HHHHHHHHHHhcCCeEEEe
Q 012338 198 DL----VVRVGKPETVLVELAKAIGADAVYAHREV-SHDEVK-SEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 198 ~L----~v~~G~~~~vL~~L~~~~~a~~V~~n~e~-~p~e~~-rd~~v~~~l~~~gI~v~~~ 253 (465)
++ .+..|++.+.|.+++++.+++-|+.-..- ...... .-....+.+...+++|..+
T Consensus 93 ~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 93 AKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp CSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEE
T ss_pred ceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEE
Confidence 53 56789999999999999999999887542 111110 1122334445557777654
No 21
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=81.25 E-value=3.2 Score=35.91 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=63.9
Q ss_pred CCCccccHHHHHHhh---cCCceeeE--EEeCCCcc-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCc---EEEEe
Q 012338 133 DLRVHDNESLNTANN---ESVSVLPV--YCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSD---LVVRV 203 (465)
Q Consensus 133 DLRl~DN~AL~~A~~---~~~~vl~v--yi~dp~~~-~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~---L~v~~ 203 (465)
|.--....+|..|.. .+..|..| +++++..+ .....+..........-..+.|.++.+.+++.|++ ..+..
T Consensus 25 D~s~~s~~al~~A~~lA~~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~ 104 (163)
T 1tq8_A 25 DGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIV 104 (163)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 444444556666543 45678788 87765432 10000000000000011234566777778888877 45678
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccC-ChhHHHH-HHHHHHHHHhcCCeEEEe
Q 012338 204 GKPETVLVELAKAIGADAVYAHREV-SHDEVKS-EEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 204 G~~~~vL~~L~~~~~a~~V~~n~e~-~p~e~~r-d~~v~~~l~~~gI~v~~~ 253 (465)
|++.+.|.+++++.+++-|++-..- ....... -....+.+....++|..+
T Consensus 105 G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 105 GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEE
Confidence 9999999999999999999887542 2222111 112233445557777654
No 22
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=76.72 E-value=18 Score=29.52 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=48.0
Q ss_pred cccHHHHHHhh----cCCceeeEEEeCCCccCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHhCCC---cEEEEeCChH
Q 012338 137 HDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGF--DKTGPYRASFLIESVSDLRKNLQARGS---DLVVRVGKPE 207 (465)
Q Consensus 137 ~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~g~--~~~~~~r~~FllesL~dL~~~L~~~Gi---~L~v~~G~~~ 207 (465)
....+|..|.. .+..|..+++.++..... .+. .........-..+.|.++.+. .|+ ...+..|++.
T Consensus 14 ~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~g~~~ 88 (137)
T 2z08_A 14 HARRAAEVAKAEAEAHGARLIVVHAYEPVPDYL--GEPFFEEALRRRLERAEGVLEEARAL---TGVPKEDALLLEGVPA 88 (137)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHH---HCCCGGGEEEEESSHH
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEEEecCCCccc--cccchHHHHHHHHHHHHHHHHHHHHH---cCCCccEEEEEecCHH
Confidence 34456666543 467889999987532110 000 000000111122223333222 465 5678899999
Q ss_pred HHHHHHHHHhCCCEEEEecc
Q 012338 208 TVLVELAKAIGADAVYAHRE 227 (465)
Q Consensus 208 ~vL~~L~~~~~a~~V~~n~e 227 (465)
+.|.+++++.+++-|++-..
T Consensus 89 ~~I~~~a~~~~~dliV~G~~ 108 (137)
T 2z08_A 89 EAILQAARAEKADLIVMGTR 108 (137)
T ss_dssp HHHHHHHHHTTCSEEEEESS
T ss_pred HHHHHHHHHcCCCEEEECCC
Confidence 99999999999999988654
No 23
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=74.16 E-value=5.2 Score=37.67 Aligned_cols=97 Identities=20% Similarity=0.113 Sum_probs=54.9
Q ss_pred HHHHHHhhcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEe--CC---hHHHHHHHH
Q 012338 140 ESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV--GK---PETVLVELA 214 (465)
Q Consensus 140 ~AL~~A~~~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v~~--G~---~~~vL~~L~ 214 (465)
-+++.|.+.|-.|++++..-+.... +..|--..+...+...+.+|+++++.. |. -.+.+.+++
T Consensus 19 ~al~~l~~~G~eV~~L~~~~~~~~~------------s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l 86 (237)
T 3rjz_A 19 YALYWAIKNRFSVKFLVTMVSENEE------------SYMYHTINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVL 86 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEECC--------------------CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEEEEcCCCCC------------ccccCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHH
Confidence 4666677778778887654332111 001111123344445567799998875 32 345666777
Q ss_pred HHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEE
Q 012338 215 KAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (465)
Q Consensus 215 ~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~ 251 (465)
++.+++.|++-.-...+.+.| +++.|.+.|+...
T Consensus 87 ~~~~i~~vv~Gdi~s~yqr~r---~e~vc~~~gl~~~ 120 (237)
T 3rjz_A 87 SGLKIQGIVAGALASKYQRKR---IEKVAKELGLEVY 120 (237)
T ss_dssp TTSCCSEEECC---CCSHHHH---HHHHHHHTTCEEE
T ss_pred HhcCCcEEEECCcchHHHHHH---HHHHHHHcCCEEE
Confidence 777999998877666666655 4555666687765
No 24
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=73.67 E-value=23 Score=28.86 Aligned_cols=115 Identities=14% Similarity=0.040 Sum_probs=63.6
Q ss_pred CCCccccHHHHHHhh----cCCceeeEEEeCC-CccCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHhCCCc---EE
Q 012338 133 DLRVHDNESLNTANN----ESVSVLPVYCFDP-RDYGKSSSGFDKTGPYRASF----LIESVSDLRKNLQARGSD---LV 200 (465)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp-~~~~~~~~g~~~~~~~r~~F----llesL~dL~~~L~~~Gi~---L~ 200 (465)
|.--....+|..|.. .+..|..+++.++ ..... +. .....-.+ ..++.+.|++.+++.|++ ..
T Consensus 10 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (141)
T 1jmv_A 10 DLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYT---GL--IDVNMSSMQDRISTETQKALLDLAESVDYPISEKL 84 (141)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCC---CC--EEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEE
T ss_pred cCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhc---cc--cccchHHHHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 333344566766653 4678888998832 11110 00 00000000 112233344444556764 46
Q ss_pred EEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEe
Q 012338 201 VRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 201 v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (465)
+..|++.+.|.+.+++.+++-|++-.. .....+.-....+.+...+++|..+
T Consensus 85 ~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 85 SGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp EEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EecCCHHHHHHHHHHhcCCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEe
Confidence 778999999999999999999988766 3222223333444556667777654
No 25
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=72.57 E-value=30 Score=28.06 Aligned_cols=87 Identities=8% Similarity=0.031 Sum_probs=52.7
Q ss_pred ccHHHHHHhh-----cCCceeeEEEeCCCccCCCCCCC--CCCCHHHH-HHHHHHHHHHHHHHHhCCCc--EEEEeCChH
Q 012338 138 DNESLNTANN-----ESVSVLPVYCFDPRDYGKSSSGF--DKTGPYRA-SFLIESVSDLRKNLQARGSD--LVVRVGKPE 207 (465)
Q Consensus 138 DN~AL~~A~~-----~~~~vl~vyi~dp~~~~~~~~g~--~~~~~~r~-~FllesL~dL~~~L~~~Gi~--L~v~~G~~~ 207 (465)
...+|..|.. .+..|..++++++...... .+. ........ .-..+.|+++.+.+++.|++ ..+..|++.
T Consensus 14 s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~g~~~ 92 (138)
T 3idf_A 14 CERAAQYILDMFGKDADCTLTLIHVKPEFMLYGE-AVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGINPFVVIKEGEPV 92 (138)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEESCHH
T ss_pred HHHHHHHHHHHhccCCCCEEEEEEEecCCCcccc-cccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCChH
Confidence 3455655542 3557888999887532100 000 00000001 33345667777778777876 567789999
Q ss_pred HHHHHHHHHhCCCEEEEecc
Q 012338 208 TVLVELAKAIGADAVYAHRE 227 (465)
Q Consensus 208 ~vL~~L~~~~~a~~V~~n~e 227 (465)
+.|.+.++ +++-|++-..
T Consensus 93 ~~I~~~a~--~~dliV~G~~ 110 (138)
T 3idf_A 93 EMVLEEAK--DYNLLIIGSS 110 (138)
T ss_dssp HHHHHHHT--TCSEEEEECC
T ss_pred HHHHHHHh--cCCEEEEeCC
Confidence 99999998 8998887643
No 26
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=69.84 E-value=73 Score=29.84 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=68.2
Q ss_pred cHHHHHHh----hc--CCceeeEEEeCCCccCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHhCCC---cEEEEeCChH
Q 012338 139 NESLNTAN----NE--SVSVLPVYCFDPRDYGKSSSGFDKTG--PYRASFLIESVSDLRKNLQARGS---DLVVRVGKPE 207 (465)
Q Consensus 139 N~AL~~A~----~~--~~~vl~vyi~dp~~~~~~~~g~~~~~--~~r~~FllesL~dL~~~L~~~Gi---~L~v~~G~~~ 207 (465)
..+|..|. .. +..|..|+++++...... .+..... ........+..+.|++-+++.|+ ...+..|++.
T Consensus 177 ~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~g~~~ 255 (319)
T 3olq_A 177 LKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIA-IELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKEGLPE 255 (319)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCC-TTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEeecCcchhhh-ccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEecCCcH
Confidence 55666554 34 678999999886543210 0000111 12223344445556666677776 4788899999
Q ss_pred HHHHHHHHHhCCCEEEEecc-CChhHH-HHHHHHHHHHHhcCCeEEEee
Q 012338 208 TVLVELAKAIGADAVYAHRE-VSHDEV-KSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 208 ~vL~~L~~~~~a~~V~~n~e-~~p~e~-~rd~~v~~~l~~~gI~v~~~~ 254 (465)
+.|.+++++.+++-|++-.. -..... -.-...++.+....++|-.+.
T Consensus 256 ~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~ 304 (319)
T 3olq_A 256 QVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIK 304 (319)
T ss_dssp HHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEEC
Confidence 99999999999999887652 222222 222334445566677776543
No 27
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=69.77 E-value=17 Score=32.35 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEe
Q 012338 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (465)
Q Consensus 182 lesL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n 225 (465)
..++.++-+.|++.|+++.|..+.+...+..+++..|+..++.+
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~~~~~ 137 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIAT 137 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCEEEEC
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEc
Confidence 56677888889999999999999999999999999999877654
No 28
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=69.11 E-value=56 Score=30.43 Aligned_cols=103 Identities=12% Similarity=0.171 Sum_probs=67.9
Q ss_pred CCCccccHHHHHHhh----cCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcE--EEEeCCh
Q 012338 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDL--VVRVGKP 206 (465)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L--~v~~G~~ 206 (465)
|..-....+|..|.. .+.+|..+++.++.. -.+.++++.+.|++.|++. .+..|++
T Consensus 178 d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------------------~~~~l~~~~~~l~~~~~~~~~~~~~g~~ 239 (294)
T 3loq_A 178 DFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------------------KTADLRVMEEVIGAEGIEVHVHIESGTP 239 (294)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------------------CHHHHHHHHHHHHHTTCCEEEEEECSCH
T ss_pred CCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------------------HHHHHHHHHHHHHHcCCcEEEEEecCCH
Confidence 555556677776653 456788888887531 1245677778888888774 5567999
Q ss_pred HHHHHHHHHHhCCCEEEEecc-CChhHHH-HHHHHHHHHHhcCCeEEEe
Q 012338 207 ETVLVELAKAIGADAVYAHRE-VSHDEVK-SEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 207 ~~vL~~L~~~~~a~~V~~n~e-~~p~e~~-rd~~v~~~l~~~gI~v~~~ 253 (465)
.+.|.+++++.+++-|++-.. -...... .-...++.+....+++..+
T Consensus 240 ~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 240 HKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEE
Confidence 999999999999999887643 2222221 2223344556667777654
No 29
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=67.55 E-value=37 Score=31.72 Aligned_cols=110 Identities=8% Similarity=0.006 Sum_probs=59.8
Q ss_pred cHHHHHHh----hcCCceeeEEEeCCCccCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHhCCC---cEEEEeCChHHHH
Q 012338 139 NESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTG-PYRASFLIESVSDLRKNLQARGS---DLVVRVGKPETVL 210 (465)
Q Consensus 139 N~AL~~A~----~~~~~vl~vyi~dp~~~~~~~~g~~~~~-~~r~~FllesL~dL~~~L~~~Gi---~L~v~~G~~~~vL 210 (465)
..+|..|. ..+..|..++++++...... ... ...-....+..+.|++-+++.|+ ...+..|++.+.|
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I 229 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLSSA-----DPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLI 229 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC--------------CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCcccccc-----CchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHH
Confidence 45666664 34678889999886433110 000 11112223334444444555565 4688899999999
Q ss_pred HHHHHHhCCCEEEEecc-CChhHH-HHHHHHHHHHHhcCCeEEEe
Q 012338 211 VELAKAIGADAVYAHRE-VSHDEV-KSEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 211 ~~L~~~~~a~~V~~n~e-~~p~e~-~rd~~v~~~l~~~gI~v~~~ 253 (465)
.+++++.+++-|++-.. -..... -.-....+.+....++|..+
T Consensus 230 ~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv 274 (290)
T 3mt0_A 230 PRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVL 274 (290)
T ss_dssp HHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEE
T ss_pred HHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEE
Confidence 99999999999987643 111111 01122334445556776543
No 30
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=62.42 E-value=85 Score=29.12 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=64.4
Q ss_pred HhhcCCceeeEEEeCCCccCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHhCCCcEEE---E-eCChHHHHHHHHHHh
Q 012338 145 ANNESVSVLPVYCFDPRDYGKSSSGFDKTG---PYRASFLIESVSDLRKNLQARGSDLVV---R-VGKPETVLVELAKAI 217 (465)
Q Consensus 145 A~~~~~~vl~vyi~dp~~~~~~~~g~~~~~---~~r~~FllesL~dL~~~L~~~Gi~L~v---~-~G~~~~vL~~L~~~~ 217 (465)
|...+..|..++++++........+. ... .....-..+.|.++.+.+++.|++... . .|++.+.| ++++.
T Consensus 46 A~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~ 122 (294)
T 3loq_A 46 KKVGVEEIGVLFVINLTKLSTVSGGI-DIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI--IKASE 122 (294)
T ss_dssp HHTTCCEEEEECCEECTTC-----CC-CTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSSCCEECHHHHH--HHHHT
T ss_pred HhhcCCEEEEEEEecCcccccccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEeeccCChhHhe--eeccC
Confidence 33456788899988765422100010 011 122234556778888888888998765 4 79999988 88999
Q ss_pred CCCEEEEeccCChhHHH-H-HHHHHHHHHhcCCeEEEee
Q 012338 218 GADAVYAHREVSHDEVK-S-EEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 218 ~a~~V~~n~e~~p~e~~-r-d~~v~~~l~~~gI~v~~~~ 254 (465)
+++-|+.-..-.....+ . -....+.+...+++|..+.
T Consensus 123 ~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~ 161 (294)
T 3loq_A 123 NYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFK 161 (294)
T ss_dssp TSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEEC
T ss_pred CCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEec
Confidence 99999987543222111 1 1223455566678887554
No 31
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=60.73 E-value=17 Score=30.55 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=67.0
Q ss_pred CCCccccHHHHHHhh----cCCceeeEEEeCCC-----ccCCCC-CC--CCCCC-----HH---HHHHHHHHHHHHHHHH
Q 012338 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPR-----DYGKSS-SG--FDKTG-----PY---RASFLIESVSDLRKNL 192 (465)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~-----~~~~~~-~g--~~~~~-----~~---r~~FllesL~dL~~~L 192 (465)
|.--....+|..|+. .+..|..++++++. ...... .+ ..... .. ...-..+.|.++.+.+
T Consensus 13 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (162)
T 1mjh_A 13 DFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL 92 (162)
T ss_dssp CSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445567777764 35678899998764 110000 00 00000 00 1122344566777777
Q ss_pred HhCCCcE--EEEeCChHHHHHHHHHHhCCCEEEEeccC-ChhHHH-HHHHHHHHHHhcCCeEEEe
Q 012338 193 QARGSDL--VVRVGKPETVLVELAKAIGADAVYAHREV-SHDEVK-SEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 193 ~~~Gi~L--~v~~G~~~~vL~~L~~~~~a~~V~~n~e~-~p~e~~-rd~~v~~~l~~~gI~v~~~ 253 (465)
+..|+++ .+..|++.+.|.+++++.+++-|+.-..- +..... .-....+.+....++|..+
T Consensus 93 ~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv 157 (162)
T 1mjh_A 93 EDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVV 157 (162)
T ss_dssp HHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEE
T ss_pred HHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEE
Confidence 7888875 56779999999999999999999886542 111110 0112233444456777654
No 32
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=53.92 E-value=50 Score=28.27 Aligned_cols=73 Identities=12% Similarity=0.001 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhCCCcEE---EEeCChHHHHHHHHHHhC--CCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEe
Q 012338 181 LIESVSDLRKNLQARGSDLV---VRVGKPETVLVELAKAIG--ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 181 llesL~dL~~~L~~~Gi~L~---v~~G~~~~vL~~L~~~~~--a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (465)
-.+.|..--..|++.|+... +..++|...|.+.+.+++ ++.|+.-..+-.-+......+....++.|++|..+
T Consensus 56 A~~~l~~sl~aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~DwasrAr~~gvPVlhl 133 (138)
T 2iel_A 56 AEEEAAAAKRALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGGGSSCEEEE
T ss_pred HHHHHHHHHHHHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHHHHHHhcCCCEEEE
Confidence 34566666667788898875 788999999999999999 99988776554444444444555555579988653
No 33
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=52.53 E-value=28 Score=29.69 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCcE--EEEeCChHHHHHHHHHHhCCCEEEEeccC-ChhHHH-HHHHHHHHHHhcCCeEEEee
Q 012338 182 IESVSDLRKNLQARGSDL--VVRVGKPETVLVELAKAIGADAVYAHREV-SHDEVK-SEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 182 lesL~dL~~~L~~~Gi~L--~v~~G~~~~vL~~L~~~~~a~~V~~n~e~-~p~e~~-rd~~v~~~l~~~gI~v~~~~ 254 (465)
.+.|..+.+.+++.|+++ .+..|++.+.|.+++++.+++-|++-..- ...... .-....+.+....++|..+.
T Consensus 86 ~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~ 162 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162 (175)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEc
Confidence 345666666777778765 46789999999999999999999887542 211111 11223344555677776543
No 34
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=50.19 E-value=60 Score=28.25 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=49.3
Q ss_pred HHHHHHHHHHH----hCCCcEEEEeCChHHHHHHHHHHh--CCCEEEEec-cCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 183 ESVSDLRKNLQ----ARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 183 esL~dL~~~L~----~~Gi~L~v~~G~~~~vL~~L~~~~--~a~~V~~n~-e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
.+|.++.+.|+ ++|+.+.++..+.+..|.+.+++. +++.|+.|- .|+........+++. +..-++++..++-
T Consensus 29 ~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~-l~~~~~P~VEVHi 107 (151)
T 3u80_A 29 QDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHM-VIDENLPLMEVHI 107 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHH-HHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHH-HhhcCCCEEEEEc
Confidence 45555555554 479999999988887776666542 467788874 566665543333221 3345899998877
Q ss_pred CeeeeC
Q 012338 256 STLYHL 261 (465)
Q Consensus 256 ~~L~~p 261 (465)
..++.+
T Consensus 108 SNi~aR 113 (151)
T 3u80_A 108 SNPSAR 113 (151)
T ss_dssp SCCC--
T ss_pred CCcccc
Confidence 666553
No 35
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=49.86 E-value=28 Score=31.10 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=39.7
Q ss_pred HHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCC
Q 012338 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (465)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI 248 (465)
+.|++.|+++.|..|+....+..++++.|+..++.... +. -..+...+++.|+
T Consensus 62 ~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~~k--~k----~~~~~~~~~~~~~ 114 (195)
T 3n07_A 62 KALMNAGIEIAIITGRRSQIVENRMKALGISLIYQGQD--DK----VQAYYDICQKLAI 114 (195)
T ss_dssp HHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECSCS--SH----HHHHHHHHHHHCC
T ss_pred HHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeCCC--Cc----HHHHHHHHHHhCC
Confidence 45677899999999999999999999999998876542 22 2345556666665
No 36
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=48.49 E-value=24 Score=30.58 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=38.8
Q ss_pred HHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCC
Q 012338 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (465)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI 248 (465)
+=+.|++.|+++.|..|+....+..+++..|+. ++... .+. -..+...+++.|+
T Consensus 47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-~~~~~--~~k----~~~l~~~~~~~~~ 100 (176)
T 3mmz_A 47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-VLHGI--DRK----DLALKQWCEEQGI 100 (176)
T ss_dssp HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-EEESC--SCH----HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-eEeCC--CCh----HHHHHHHHHHcCC
Confidence 445677889999999999999999999999999 55543 222 2235555555565
No 37
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=48.35 E-value=19 Score=32.65 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=41.3
Q ss_pred HHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCC
Q 012338 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (465)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI 248 (465)
+=+.|++.|+++.|..|++...+..++++.|+..++.... +. -..+...+++.|+
T Consensus 84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~~k--~K----~~~l~~~~~~lg~ 138 (211)
T 3ij5_A 84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQGQS--DK----LVAYHELLATLQC 138 (211)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCS--SH----HHHHHHHHHHHTC
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcccC--Ch----HHHHHHHHHHcCc
Confidence 4467788899999999999999999999999998887542 11 2345556665565
No 38
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=47.26 E-value=1.6e+02 Score=27.35 Aligned_cols=120 Identities=11% Similarity=0.010 Sum_probs=70.2
Q ss_pred CCCccccHHHHHHh----hcCCceeeEEEeCCCccCCCCCCCCCCCHH-HHH-------HHHHHHHHHHHHHHhCCCcE-
Q 012338 133 DLRVHDNESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTGPY-RAS-------FLIESVSDLRKNLQARGSDL- 199 (465)
Q Consensus 133 DLRl~DN~AL~~A~----~~~~~vl~vyi~dp~~~~~~~~g~~~~~~~-r~~-------FllesL~dL~~~L~~~Gi~L- 199 (465)
|.--....+|..|+ ..+.+|..++++++...... + ..+.. ... -..+.|+++.+.++..|+++
T Consensus 15 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~ 90 (319)
T 3olq_A 15 DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMT--T--LLSPDERNAMRKGVINQKTAWIKQQARYYLEAGIQID 90 (319)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCT--T--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhc--c--ccChhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEE
Confidence 54455567777665 34678888988764322110 0 11111 111 12345566666666778876
Q ss_pred -EEE-eCChHHHHHHHHHHhCCCEEEEeccCChh-HHH-HHHHHHHHHHhcCCeEEEeeCC
Q 012338 200 -VVR-VGKPETVLVELAKAIGADAVYAHREVSHD-EVK-SEEKIEAAMKDEGIEVKYFWGS 256 (465)
Q Consensus 200 -~v~-~G~~~~vL~~L~~~~~a~~V~~n~e~~p~-e~~-rd~~v~~~l~~~gI~v~~~~~~ 256 (465)
.+. .|++.+.|.+.+++.+++-|+.-..-... ... .-....+.+...+++|..+...
T Consensus 91 ~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 91 IKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESS
T ss_pred EEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCc
Confidence 445 79999999999999999999886543111 000 1123344556668888877644
No 39
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=45.62 E-value=1e+02 Score=29.25 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC--ChH---HHHHHHHHH-hCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEe
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKA-IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G--~~~---~vL~~L~~~-~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (465)
|..+-+..+++.++++|..+.+... +.. +.+..+++. .+++.|++.-+.. . ...+.+.+.+.||++..+
T Consensus 18 f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~--~---~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 18 FWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY--V---APQILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS--H---HHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh--h---HHHHHHHHHhCCCcEEEE
Confidence 5566667777888888999988764 333 345566665 6899988754221 1 123444566789999988
Q ss_pred eCC
Q 012338 254 WGS 256 (465)
Q Consensus 254 ~~~ 256 (465)
+..
T Consensus 93 ~~~ 95 (350)
T 3h75_A 93 NSP 95 (350)
T ss_dssp ESC
T ss_pred cCC
Confidence 754
No 40
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=45.22 E-value=23 Score=31.09 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=41.4
Q ss_pred HHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCe
Q 012338 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (465)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~ 249 (465)
+=+.|++.|+++.|..|++...+..++++.|+..++..... + -..+...+++.|+.
T Consensus 54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~~f~~~~~----K--~~~~~~~~~~~g~~ 109 (189)
T 3mn1_A 54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEHLFQGRED----K--LVVLDKLLAELQLG 109 (189)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSEEECSCSC----H--HHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHHHhcCcCC----h--HHHHHHHHHHcCCC
Confidence 44567788999999999999999999999999988765411 1 14456666666653
No 41
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=44.93 E-value=1.1e+02 Score=27.36 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEe--CChHHHHHHHHHHh--CCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEee
Q 012338 183 ESVSDLRKNLQARGSDLVVRV--GKPETVLVELAKAI--GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~--G~~~~vL~~L~~~~--~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (465)
+++.-++..+++.|-+++|-. |....++..++.+. .+..|+++..+.+.+. .+.+++.+++.||+++.+.
T Consensus 31 ~~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~e~--~~~v~~~~~~~gi~~~v~~ 104 (215)
T 1sur_A 31 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPET--YRFIDELTDKLKLNLKVYR 104 (215)
T ss_dssp CHHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHHH--HHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCHHH--HHHHHHHHHHhCCcEEEEe
Confidence 345566777777776776654 55556777777765 4667777776654433 4567778888899998764
No 42
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=44.70 E-value=1.1e+02 Score=26.23 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=50.5
Q ss_pred HHHHHhCCCcEEEEeCChHHHHHHHHHHh--CCCEEEEec-cCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCC
Q 012338 189 RKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263 (465)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~--~a~~V~~n~-e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~ 263 (465)
++..+++|+.+.++..+.+..|.+.+++. +.+.|+.|- .|+.... ++++++..-++++..++-..++.++.
T Consensus 35 ~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~ 108 (143)
T 1gqo_A 35 FQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSY----AIRDAVSSISLPVVEVHLSNLYAREE 108 (143)
T ss_dssp HHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSCG
T ss_pred HHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCcccccc
Confidence 33345569999999998887777766654 467888884 5565555 35666666789999988777766543
No 43
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=43.59 E-value=97 Score=28.56 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeCC---hHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 179 SFLIESVSDLRKNLQARGSDLVVRVGK---PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 179 ~FllesL~dL~~~L~~~Gi~L~v~~G~---~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
.|..+-+..+.+.++++|..+.+...+ ....+.+++...+++.|+..-..... ...+.+.+.||++..++.
T Consensus 23 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 23 STFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC------HHHHHHHHTTCCEEEESC
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHhCCCCEEEECC
Confidence 367777788888999999999887532 23456667777799998875432211 223445677999998865
Q ss_pred C
Q 012338 256 S 256 (465)
Q Consensus 256 ~ 256 (465)
.
T Consensus 97 ~ 97 (294)
T 3qk7_A 97 S 97 (294)
T ss_dssp C
T ss_pred C
Confidence 4
No 44
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=43.18 E-value=93 Score=29.87 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEec
Q 012338 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR 226 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~ 226 (465)
.++.++-+.|++.|+++.|..+.+...+..+++..|+..++.+.
T Consensus 182 pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~ 225 (317)
T 4eze_A 182 PGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNT 225 (317)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEC
T ss_pred cCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEE
Confidence 35667778889999999999999999999999999999887654
No 45
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=42.95 E-value=93 Score=25.83 Aligned_cols=57 Identities=23% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCe
Q 012338 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (465)
Q Consensus 187 dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~ 249 (465)
++=+.|++.|+++.+..|.+...+..+++..++..++.... +. ...+...+++.|+.
T Consensus 43 ~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~k--p~----~~~~~~~~~~~~~~ 99 (162)
T 2p9j_A 43 IGIKLLQKMGITLAVISGRDSAPLITRLKELGVEEIYTGSY--KK----LEIYEKIKEKYSLK 99 (162)
T ss_dssp HHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCEEEECC----C----HHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHhhccCCC--CC----HHHHHHHHHHcCCC
Confidence 33445677899999999998888999999999987664322 11 22345555556653
No 46
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=42.93 E-value=1.4e+02 Score=25.79 Aligned_cols=72 Identities=15% Similarity=0.066 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCcEEEEeCChHHHHHHHHHHh--C-CCEEEEec-cCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCC
Q 012338 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAI--G-ADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (465)
Q Consensus 187 dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~--~-a~~V~~n~-e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~ 262 (465)
.+++..+++|+.+.++..+.+..|.+.+++. + ++.|+.|- .|+.... ++++++..-++++..++-..++.++
T Consensus 32 ~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 107 (149)
T 2uyg_A 32 LCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSY----ALLDAIRAQPLPVVEVHLTNLHARE 107 (149)
T ss_dssp HHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSC
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 3344446679999999999888777777664 2 66888884 5566655 4566666778999998877776644
No 47
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=42.92 E-value=1.1e+02 Score=26.12 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=57.9
Q ss_pred ceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEe-------------CChHHHHHHHHHHh
Q 012338 151 SVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV-------------GKPETVLVELAKAI 217 (465)
Q Consensus 151 ~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v~~-------------G~~~~vL~~L~~~~ 217 (465)
-++|-|+++.-+..+ +.+..+-+.=++-|+.|++.-.+.++++.+.. |+....+.++|+++
T Consensus 32 iiIP~~Vl~EL~~~a------~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~ 105 (142)
T 3i8o_A 32 IIIPEAVVSELEYQA------NMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKET 105 (142)
T ss_dssp EEEEHHHHHHHHHHH------TTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHT
T ss_pred EEehHHHHHHHHHHH------HccchhhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHh
Confidence 467888887543322 22445666777778888776667789988764 34566789999998
Q ss_pred CCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEe
Q 012338 218 GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 218 ~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (465)
++. |+++ + ..+.+.++..||++...
T Consensus 106 ~a~-lvTn-D---------~~l~kvA~~~GI~V~~l 130 (142)
T 3i8o_A 106 NSI-LLTS-D---------WIQYNLAKAQGIEAYFL 130 (142)
T ss_dssp TCE-EEES-C---------HHHHHHHHHTTCCEEEC
T ss_pred CCE-EEcC-C---------HHHHHHHHHcCCEEEEe
Confidence 863 4443 2 34566666789999764
No 48
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=42.43 E-value=1.1e+02 Score=26.75 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCcEEEEeCChHHHHHHHHHHh--CCCEEEEec-cCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCC
Q 012338 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (465)
Q Consensus 187 dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~--~a~~V~~n~-e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~ 262 (465)
.+++..+++|+.+.++..+.+..|.+.+++. +++.|+.|- .|+.... ++++++..-++++..++-..++.++
T Consensus 34 ~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 108 (154)
T 1uqr_A 34 HLQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSV----AIRDALLAVSIPFIEVHLSNVHARE 108 (154)
T ss_dssp HHHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCH----HHHHHHHHHTCCEEEEESSCGGGSC
T ss_pred HHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 3344445679999999999888777777664 467788884 3444444 3555555568999998877776544
No 49
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=41.53 E-value=1.6e+02 Score=26.69 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCC--hHH--HHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVGK--PET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G~--~~~--vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-+..+++.++++|..+.+...+ ... .+.+.+...+++.|++.-... + ...+.+.+.||++..++.
T Consensus 21 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~-~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 21 FSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------P-QTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------H-HHHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------H-HHHHHHHHCCCCEEEEec
Confidence 66666778888999999999887643 221 223334456899988765432 2 233455678999988764
Q ss_pred C
Q 012338 256 S 256 (465)
Q Consensus 256 ~ 256 (465)
.
T Consensus 94 ~ 94 (276)
T 3jy6_A 94 E 94 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 50
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=40.94 E-value=93 Score=25.53 Aligned_cols=52 Identities=25% Similarity=0.460 Sum_probs=33.0
Q ss_pred EEEEeCChHHHHHHHHHH---hCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEee
Q 012338 199 LVVRVGKPETVLVELAKA---IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 199 L~v~~G~~~~vL~~L~~~---~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (465)
++|+..+| ++|.+++++ .|+..|..-.+ -++.+|.++++++ ++.|+.++++.
T Consensus 5 fvvfssdp-eilkeivreikrqgvrvvllysd--qdekrrrerleef-ekqgvdvrtve 59 (162)
T 2l82_A 5 FVVFSSDP-EILKEIVREIKRQGVRVVLLYSD--QDEKRRRERLEEF-EKQGVDVRTVE 59 (162)
T ss_dssp EEEEESCH-HHHHHHHHHHHHTTCEEEEEECC--SCHHHHHHHHHHH-HTTTCEEEECC
T ss_pred EEEecCCH-HHHHHHHHHHHhCCeEEEEEecC--chHHHHHHHHHHH-HHcCCceeeec
Confidence 45566666 567777665 36655544332 3567777777765 67899998753
No 51
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=40.81 E-value=47 Score=27.81 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCC
Q 012338 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (465)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI 248 (465)
-+.|++.|+++.+..|.+...+..++++.++..++.... |.. ..+...+++.|+
T Consensus 40 l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~~~~~~k--pk~----~~~~~~~~~~~~ 93 (164)
T 3e8m_A 40 IFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDYLFQGVV--DKL----SAAEELCNELGI 93 (164)
T ss_dssp HHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSEEECSCS--CHH----HHHHHHHHHHTC
T ss_pred HHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCEeecccC--ChH----HHHHHHHHHcCC
Confidence 345677899999999999888999999999998876542 221 234445555565
No 52
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=39.56 E-value=75 Score=27.80 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=38.7
Q ss_pred HHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCC
Q 012338 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (465)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI 248 (465)
+.|++.|+++.|..+++...+..+++..|+..++...-..+. .+...+++.|+
T Consensus 56 ~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~~~~~~kpk~~------~~~~~~~~~~~ 108 (191)
T 3n1u_A 56 KLLMAAGIQVAIITTAQNAVVDHRMEQLGITHYYKGQVDKRS------AYQHLKKTLGL 108 (191)
T ss_dssp HHHHHTTCEEEEECSCCSHHHHHHHHHHTCCEEECSCSSCHH------HHHHHHHHHTC
T ss_pred HHHHHCCCeEEEEeCcChHHHHHHHHHcCCccceeCCCChHH------HHHHHHHHhCC
Confidence 456778999999999999999999999999987765432222 33444444465
No 53
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=39.21 E-value=71 Score=31.21 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEE
Q 012338 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~ 224 (465)
+-+..+++-|+.+|++.++..++..+++..|++...+..|++
T Consensus 130 ~~~~~~~~lL~~~gip~i~ap~EADa~iA~La~~g~~~~i~S 171 (340)
T 1b43_A 130 MLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASAS 171 (340)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHHHHHHcCCcEEEcChhHHHHHHHHHHcCCEEEEEc
Confidence 445667778888898888888888888888888654555544
No 54
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=39.16 E-value=1.2e+02 Score=26.21 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=49.6
Q ss_pred HHHHHHhCCCcEEEEeCChHHHHHHHHHHh--CCCEEEEec-cCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCC
Q 012338 188 LRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (465)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~--~a~~V~~n~-e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~ 262 (465)
+++..+++|+.+.++..+.+..|.+.+++. +++.|+.|- .|+.... ++++++..-++++..++-..++.++
T Consensus 36 l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE 109 (146)
T 1h05_A 36 IEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHARE 109 (146)
T ss_dssp HHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHHTCCSCEEEEESSCGGGSC
T ss_pred HHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhCCCCEEEEEecCccccc
Confidence 333445679999999988887666666543 367788874 5565555 4566677779999998877776654
No 55
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=38.74 E-value=1.1e+02 Score=26.98 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=47.8
Q ss_pred HhCCCcEEEEeCChHHHHHHHHHHh---CCCEEEEec-cCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCC
Q 012338 193 QARGSDLVVRVGKPETVLVELAKAI---GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263 (465)
Q Consensus 193 ~~~Gi~L~v~~G~~~~vL~~L~~~~---~a~~V~~n~-e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~ 263 (465)
.++|+.+.++..+.+..|.+.+.+. +++.|+.|- .|+..... +++.+..-++++..++-..++..+.
T Consensus 55 ~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSvA----lrDAL~~v~~P~VEVHiSNihaRE~ 125 (167)
T 3kip_A 55 KNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSVG----IRDALLGTAIPFIEVHITNVHQREP 125 (167)
T ss_dssp TCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCHH----HHHHHHHTTCCEEEEESSCGGGSCG
T ss_pred ccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEccccceeccHH----HHHHHHhcCCCEEEEEcCCcccccc
Confidence 4578999999988887777766553 478888885 55555553 4555556689999988777766543
No 56
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=38.35 E-value=1.2e+02 Score=28.82 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEe
Q 012338 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (465)
Q Consensus 184 sL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n 225 (465)
.+.++-+.|++.|+++.+..+.....+..+.+..|+..++.+
T Consensus 182 g~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~~~~~ 223 (335)
T 3n28_A 182 ELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSN 223 (335)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCeEEee
Confidence 455667788899999999999888888899999999887765
No 57
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=38.03 E-value=17 Score=36.48 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCC------CEEEEec
Q 012338 181 LIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA------DAVYAHR 226 (465)
Q Consensus 181 llesL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a------~~V~~n~ 226 (465)
+...+.+|-+.|++.|++++|+.|...+.+..++++.|+ ++|+.++
T Consensus 222 ~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~y~ip~~~Vig~~ 273 (385)
T 4gxt_A 222 TLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNNYKMKEEKVLGLR 273 (385)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSSCCCCGGGEEEEC
T ss_pred eCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcccCCCcceEEEeE
Confidence 467889999999999999999999999999999998654 4576653
No 58
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=37.27 E-value=72 Score=34.86 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=42.0
Q ss_pred HHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEe
Q 012338 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (465)
+.|++.|+++++..|+.......++++.|++.+++. ..|.++. .+.+.+++.|-.+-.+
T Consensus 564 ~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~~v~a~--~~P~~K~---~~v~~l~~~g~~V~~v 622 (736)
T 3rfu_A 564 LELQQSGIEIVMLTGDSKRTAEAVAGTLGIKKVVAE--IMPEDKS---RIVSELKDKGLIVAMA 622 (736)
T ss_dssp HHHHHHTCEEEEECSSCHHHHHHHHHHHTCCCEECS--CCHHHHH---HHHHHHHHHSCCEEEE
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCCEEEEe--cCHHHHH---HHHHHHHhcCCEEEEE
Confidence 355667999999999999999999999999998874 4565543 2334444455444443
No 59
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=37.07 E-value=1.1e+02 Score=28.26 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=67.4
Q ss_pred CCCccccHHHHHHhh----cCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEE--E-eCC
Q 012338 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVV--R-VGK 205 (465)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v--~-~G~ 205 (465)
|.--....+|..|+. .+.+|..+++.++.. .. +.|+++.+.++..|+++.+ . .|+
T Consensus 15 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~-----------~~-------~~l~~~~~~~~~~~~~~~~~~~~~g~ 76 (290)
T 3mt0_A 15 EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD-----------HS-------AALNDLAQELREEGYSVSTNQAWKDS 76 (290)
T ss_dssp CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC-----------CH-------HHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHH-----------HH-------HHHHHHHHHHhhCCCeEEEEEEeCCC
Confidence 555566777877653 467888888887511 11 2345666677778887754 3 478
Q ss_pred hHHHHHHHHHHhCCCEEEEeccCChh--HHHHHHHHHHHHHhcCCeEEEee
Q 012338 206 PETVLVELAKAIGADAVYAHREVSHD--EVKSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 206 ~~~vL~~L~~~~~a~~V~~n~e~~p~--e~~rd~~v~~~l~~~gI~v~~~~ 254 (465)
+.+.|.+.+++.+++-|+.-..-... ..-.-....+.+...++++..+.
T Consensus 77 ~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~ 127 (290)
T 3mt0_A 77 LHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTK 127 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEec
Confidence 99999999999999999887543211 11011234455566788888766
No 60
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=37.06 E-value=1.1e+02 Score=30.58 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH--------hCCCEEEEeccCChhHHHHHHHHHHHHHhcCCe
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA--------IGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~--------~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~ 249 (465)
-++.++.++=+.|++.|+.+.|..++..+.+...+++ .++..++.+... . -+.+.+.+++.|+.
T Consensus 256 ~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~~~~~~l~l~~~~~v~~~~KP--K----p~~l~~al~~Lgl~ 327 (387)
T 3nvb_A 256 KAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFERNPEMVLKLDDIAVFVANWEN--K----ADNIRTIQRTLNIG 327 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHHCTTCSSCGGGCSEEEEESSC--H----HHHHHHHHHHHTCC
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhccccccCccCccEEEeCCCC--c----HHHHHHHHHHhCcC
Confidence 4578888888999999999999999988888888887 456666654332 2 23466667777774
No 61
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=36.62 E-value=1.8e+02 Score=26.39 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHHhCCCcEEEEeCChHHHHHHHHHHhCCCE----E---------------EEeccCChhHHHHHHHHHHHHHhcCCeE
Q 012338 190 KNLQARGSDLVVRVGKPETVLVELAKAIGADA----V---------------YAHREVSHDEVKSEEKIEAAMKDEGIEV 250 (465)
Q Consensus 190 ~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~----V---------------~~n~e~~p~e~~rd~~v~~~l~~~gI~v 250 (465)
++|++.|+.+.+..|.+...+..+.+..+... + +...... ...-+.+.+.+++.++.+
T Consensus 32 ~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGai~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 108 (279)
T 3mpo_A 32 QAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDDQYAITFNGSVAQTISGKVLTNHSLT---YEDYIDLEAWARKVRAHF 108 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHHHHHHHHTTCCSSSCEEEEGGGTEEEETTSCEEEECCCC---HHHHHHHHHHHHHTTCCE
T ss_pred HHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCCEEEEcCcEEEECCCCCEEEecCCC---HHHHHHHHHHHHHcCCeE
Confidence 34677799999999999888888888877541 1 1222222 223345677778889998
Q ss_pred EEeeCCeeee
Q 012338 251 KYFWGSTLYH 260 (465)
Q Consensus 251 ~~~~~~~L~~ 260 (465)
..+.+..++.
T Consensus 109 ~~~~~~~~~~ 118 (279)
T 3mpo_A 109 QIETPDYIYT 118 (279)
T ss_dssp EEECSSCEEE
T ss_pred EEEECCEEEE
Confidence 8777665554
No 62
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=36.50 E-value=1.1e+02 Score=30.12 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEec--------------cCChhHHHHHHHHHHHHHhcCCe
Q 012338 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHR--------------EVSHDEVKSEEKIEAAMKDEGIE 249 (465)
Q Consensus 184 sL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~--------------e~~p~e~~rd~~v~~~l~~~gI~ 249 (465)
++.++-+.|++.|+++.+..|.....+..+++..|+..++.+. ++. ....--+.+...+++.|+.
T Consensus 260 g~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~l~~~dg~~tg~~~~~v~-~~kpk~~~~~~~~~~~gi~ 338 (415)
T 3p96_A 260 GARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPII-DRAGKATALREFAQRAGVP 338 (415)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEECEEEETTEEEEEECSSCC-CHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeeeeEEEeCCEEEeeEccCCC-CCcchHHHHHHHHHHcCcC
Confidence 4566777888999999999998888899999999999887653 111 1222234566677777763
No 63
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=36.39 E-value=2e+02 Score=25.01 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=47.6
Q ss_pred HHHhCCCcEEEEeCChHHHHHHHHHHh--CCCEEEEec-cCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCC
Q 012338 191 NLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (465)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~vL~~L~~~~--~a~~V~~n~-e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~ 262 (465)
.-.++|+.+.++..+.+..|.+.+++. +++.|+.|- .|+..... +++.+..-++++..++-..++..+
T Consensus 44 ~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvA----lrDAl~~~~~P~VEVHiSNi~aRE 114 (153)
T 3lwz_A 44 QAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAAFTHTSVA----LRDALLGVQIPFIEIHLSNVHARE 114 (153)
T ss_dssp HHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHH----HHHHHHHHTCCEEEEESSCGGGSC
T ss_pred HHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEccccceechHH----HHHHHHhcCCCEEEEEcCCccccc
Confidence 334579999999998887777777653 467888884 55555554 444455558999998877776544
No 64
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=35.23 E-value=1.3e+02 Score=26.20 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=48.6
Q ss_pred HHHHHHhCCCcEEEEeCChHHHHHHHHHHh--CCCEEEEec-cCChhHHHHHHHHHHHHHhcC-CeEEEeeCCeeeeCC
Q 012338 188 LRKNLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEG-IEVKYFWGSTLYHLD 262 (465)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~--~a~~V~~n~-e~~p~e~~rd~~v~~~l~~~g-I~v~~~~~~~L~~p~ 262 (465)
+++..+++|+.+.++..+.+..|.+.+++. +++.|+.|- .|+.... ++++.+..-+ +++..++-..++..+
T Consensus 40 l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSv----AlrDAl~~v~~~P~VEVHiSNi~aRE 114 (156)
T 1gtz_A 40 CVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSV----AILDALNTCDGLPVVEVHISNIHQRE 114 (156)
T ss_dssp HHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCH----HHHHHHHTSTTCCEEEEESSCGGGSC
T ss_pred HHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhcCCCCEEEEEecCccccc
Confidence 334445679999999988887766666543 477888884 3444444 4566666667 999998877776544
No 65
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.19 E-value=60 Score=25.17 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEe-CChHH---HHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcC
Q 012338 183 ESVSDLRKNLQARGSDLVVRV-GKPET---VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG 247 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~-G~~~~---vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~g 247 (465)
+-++++-++++..|-+|+|+. |.... .+..-+++-|+.-=+. ....|++. .++++++++-.|
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvl-kstdpeel--tqrvreflktag 103 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVL-KSTDPEEL--TQRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEE-ECCCHHHH--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhh-ccCCHHHH--HHHHHHHHHhcc
Confidence 456777788888899998876 44333 3333444556543222 23445554 567888887655
No 66
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=34.56 E-value=1.3e+02 Score=26.68 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=47.1
Q ss_pred HHHhCCCcEEEEeCChHHHHHHHHHHh--CCCEEEEec-cCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCC
Q 012338 191 NLQARGSDLVVRVGKPETVLVELAKAI--GADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLD 262 (465)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~vL~~L~~~~--~a~~V~~n~-e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~ 262 (465)
.-.++|+.+.++..+.+..|.+.+.+. +++.|+.|- .|+.... ++++++..-++++..++-..++..+
T Consensus 65 ~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE 135 (172)
T 3n8k_A 65 EAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHARE 135 (172)
T ss_dssp HHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHTTCCSCEEEEESSCTTSSC
T ss_pred HHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhH----HHHHHHHhCCCCEEEEEcCCchhcc
Confidence 334579999999988887776666542 467788874 4555545 4566666678999988776665544
No 67
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=34.36 E-value=1.3e+02 Score=27.53 Aligned_cols=71 Identities=17% Similarity=0.096 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC----ChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG----KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G----~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-+..+++.+++.|..+.+... +....+.+++...+++.|++....... ...+.+.+.||++..++.
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 24 FTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND------PRVRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc------HHHHHHhhCCCCEEEECC
Confidence 6677778888899999999988752 123455666667799998875322111 123345667999988765
Q ss_pred C
Q 012338 256 S 256 (465)
Q Consensus 256 ~ 256 (465)
.
T Consensus 98 ~ 98 (288)
T 3gv0_A 98 S 98 (288)
T ss_dssp C
T ss_pred c
Confidence 3
No 68
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=34.30 E-value=2.6e+02 Score=25.18 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC--ChH---HHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEee
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G--~~~---~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (465)
|..+-+..+++.+++.|..+.+... ++. +.+..+. ..+++.|+..-.. ....+ ...+.+.+.||++..++
T Consensus 19 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~---~~~~~-~~~~~~~~~~iPvV~~~ 93 (291)
T 3l49_A 19 WDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLI-AQKPDAIIEQLGN---LDVLN-PWLQKINDAGIPLFTVD 93 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-HHCCSEEEEESSC---HHHHH-HHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCCC---hhhhH-HHHHHHHHCCCcEEEec
Confidence 6667778888899999999988863 332 3333333 4589999875321 11122 23445567899999886
Q ss_pred CC
Q 012338 255 GS 256 (465)
Q Consensus 255 ~~ 256 (465)
..
T Consensus 94 ~~ 95 (291)
T 3l49_A 94 TA 95 (291)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 69
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=34.30 E-value=63 Score=28.09 Aligned_cols=54 Identities=7% Similarity=0.173 Sum_probs=38.6
Q ss_pred HHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCC
Q 012338 189 RKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGI 248 (465)
Q Consensus 189 ~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI 248 (465)
=+.|++.|+++.|..|.+...+..+++..|+..++.....-+ ..++..+++.|+
T Consensus 62 l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~~~~~~kpk~------~~~~~~~~~~g~ 115 (188)
T 2r8e_A 62 IRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNKL------IAFSDLLEKLAI 115 (188)
T ss_dssp HHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCEEECSCSCSH------HHHHHHHHHHTC
T ss_pred HHHHHHCCCeEEEEeCCChHHHHHHHHHcCCceeecCCCCCH------HHHHHHHHHcCC
Confidence 345677899999999998888999999999998776543222 234445555565
No 70
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=34.08 E-value=1.6e+02 Score=27.07 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeC--------C------------h---------HHHHHHHHHHhCCCEEEEeccCChh--
Q 012338 183 ESVSDLRKNLQARGSDLVVRVG--------K------------P---------ETVLVELAKAIGADAVYAHREVSHD-- 231 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G--------~------------~---------~~vL~~L~~~~~a~~V~~n~e~~p~-- 231 (465)
+.++++++.|++.|+.+..... + + .....+++++.|+..|.++-.+.+.
T Consensus 51 ~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~ 130 (290)
T 3tva_A 51 EHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGFVPESS 130 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTT
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccc
Confidence 5578999999999999977632 1 1 1334567788999999986433221
Q ss_pred --HH----HHHHHHHHHHHhcCCeEE
Q 012338 232 --EV----KSEEKIEAAMKDEGIEVK 251 (465)
Q Consensus 232 --e~----~rd~~v~~~l~~~gI~v~ 251 (465)
.. +.-+.+.+.+++.||.+-
T Consensus 131 ~~~~~~~~~~l~~l~~~a~~~Gv~l~ 156 (290)
T 3tva_A 131 SPDYSELVRVTQDLLTHAANHGQAVH 156 (290)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 11 122344445567788764
No 71
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=32.99 E-value=49 Score=30.09 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCCCcEEEEe---CChHHHHHHHHHHhCCCEEEEeccC---ChhHHHHHHHHHHHHHhcCCeEEE
Q 012338 183 ESVSDLRKNLQARGSDLVVRV---GKPETVLVELAKAIGADAVYAHREV---SHDEVKSEEKIEAAMKDEGIEVKY 252 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~---G~~~~vL~~L~~~~~a~~V~~n~e~---~p~e~~rd~~v~~~l~~~gI~v~~ 252 (465)
++|+-..+..+++||+-+|+- |+....+.+.+ -|++-|.+.-.+ +|++...+..+++.|++.|+.+.+
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 103 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVR 103 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 445555666777799877764 55554444444 355555555444 355667788899999999998864
No 72
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=32.07 E-value=1.8e+02 Score=26.09 Aligned_cols=69 Identities=10% Similarity=0.112 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC--ChH--HHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHH-HHHhcCCeEEEee
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEA-AMKDEGIEVKYFW 254 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G--~~~--~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~-~l~~~gI~v~~~~ 254 (465)
|..+-+..+++.++++|..+.+... +.. ..+.+.+...+++.|+..- .. +. ..+ .+.+.||++..++
T Consensus 22 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~---~~----~~-~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 22 FFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA---FN----EN-IIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG---GG----HH-HHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec---CC----hH-HHHHHHHcCCCCEEEEe
Confidence 6666677888899999999988764 332 2233344456899998854 11 12 233 5667899998876
Q ss_pred CC
Q 012338 255 GS 256 (465)
Q Consensus 255 ~~ 256 (465)
..
T Consensus 94 ~~ 95 (277)
T 3e61_A 94 RI 95 (277)
T ss_dssp GC
T ss_pred cc
Confidence 54
No 73
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=31.40 E-value=1e+02 Score=30.69 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEE
Q 012338 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (465)
Q Consensus 185 L~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~ 224 (465)
+..+++-|+.+|++.++..|+..+++..|++...+..|++
T Consensus 137 ~~~~~~lL~~~Gi~~i~apgEADd~iA~La~~g~~~~iiS 176 (379)
T 1ul1_X 137 NDECKHLLSLMGIPYLDAPSEAEASCAALVKAGKVYAAAT 176 (379)
T ss_dssp HHHHHHHHHHHTCCEEECSSCHHHHHHHHHHHTSSSEEEC
T ss_pred HHHHHHHHHHcCCCeecCCCcHHHHHHHHHhcCCeEEEEe
Confidence 4566777778888888888888888888887754544444
No 74
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=31.09 E-value=1.3e+02 Score=27.34 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeC---ChH---HHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEE
Q 012338 183 ESVSDLRKNLQARGSDLVVRVG---KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G---~~~---~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~ 251 (465)
+.++++++.|++.|+.+..... ... +...+++++.|+..|.++-. . +.-+.+.+.+++.||.+-
T Consensus 61 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p~--~---~~l~~l~~~a~~~gv~l~ 130 (257)
T 3lmz_A 61 EQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVPN--Y---ELLPYVDKKVKEYDFHYA 130 (257)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEEC--G---GGHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecCC--H---HHHHHHHHHHHHcCCEEE
Confidence 4578899999999999876542 222 34456788899999998633 1 223456777788899764
No 75
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=31.01 E-value=1.3e+02 Score=27.55 Aligned_cols=71 Identities=10% Similarity=0.021 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC--ChHH--HHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG--KPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G--~~~~--vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-+..+++.+++.|..+.+... +... .+.+.+...+++.|++.-... ...+.+.+.+.||++..++.
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 22 FFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG------EHDYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS------CCHHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC------ChHHHHHhhccCCCEEEEec
Confidence 6666678888899999999988864 3322 233344556899988754322 11234456678999988764
Q ss_pred C
Q 012338 256 S 256 (465)
Q Consensus 256 ~ 256 (465)
.
T Consensus 96 ~ 96 (291)
T 3egc_A 96 E 96 (291)
T ss_dssp C
T ss_pred c
Confidence 3
No 76
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=30.50 E-value=1.9e+02 Score=26.10 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEeC------ChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEE
Q 012338 183 ESVSDLRKNLQARGSDLVVRVG------KPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G------~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~ 251 (465)
+.++++++.|++.|+.+..... +..+...+++++.|+..|.++-. ... -+.+.+.+++.||.+-
T Consensus 63 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~--~~~---~~~l~~~a~~~gv~l~ 132 (262)
T 3p6l_A 63 QTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA--LSD---WDLVEKLSKQYNIKIS 132 (262)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC--GGG---HHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC--HHH---HHHHHHHHHHhCCEEE
Confidence 4578899999999999876542 23355667888999999998742 222 2457777788899764
No 77
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=29.92 E-value=92 Score=27.14 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCC----CEEEEeccC
Q 012338 186 SDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREV 228 (465)
Q Consensus 186 ~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a----~~V~~n~e~ 228 (465)
.++-+.|++.|+++.+..+.....+..+++..++ +.|++..+.
T Consensus 109 ~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~~~~ 155 (231)
T 3kzx_A 109 IELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTHYFDSIIGSGDT 155 (231)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEETSS
T ss_pred HHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCchhheeeEEccccc
Confidence 4444556666777776666655556666666553 445554443
No 78
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=29.51 E-value=71 Score=29.99 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=50.6
Q ss_pred CCCccccHHHHHHhh----cCCceeeEEEeCCCccCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHh--CCCc--EEEEe
Q 012338 133 DLRVHDNESLNTANN----ESVSVLPVYCFDPRDYGKSSSGFDKTG-PYRASFLIESVSDLRKNLQA--RGSD--LVVRV 203 (465)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~dp~~~~~~~~g~~~~~-~~r~~FllesL~dL~~~L~~--~Gi~--L~v~~ 203 (465)
|..-....+|..|.. .+.+|..|+++++..... ..... .....-..+.|+++.+.|++ .|+. ..+..
T Consensus 179 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (309)
T 3cis_A 179 DGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE----WPGIDWPATQSMAEQVLAERLAGWQERYPNVAITRVVVR 254 (309)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT----CSSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEEEEEES
T ss_pred CCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccC----CCcccHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEEEc
Confidence 555555667766653 467899999987643210 00011 11111222334444444433 2544 45678
Q ss_pred CChHHHHHHHHHHhCCCEEEEec
Q 012338 204 GKPETVLVELAKAIGADAVYAHR 226 (465)
Q Consensus 204 G~~~~vL~~L~~~~~a~~V~~n~ 226 (465)
|++.+.|.+.++ +++-|++-.
T Consensus 255 g~~~~~I~~~a~--~adliV~G~ 275 (309)
T 3cis_A 255 DQPARQLVQRSE--EAQLVVVGS 275 (309)
T ss_dssp SCHHHHHHHHHT--TCSEEEEES
T ss_pred CCHHHHHHHhhC--CCCEEEECC
Confidence 999999999987 899888764
No 79
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=29.36 E-value=95 Score=25.74 Aligned_cols=45 Identities=7% Similarity=-0.054 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEE
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA 224 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~ 224 (465)
-.+..|.++.+++++.|+.++.+.-+..+.+.++++++++.-.+.
T Consensus 53 ~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 97 (163)
T 3gkn_A 53 TEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLV 97 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEE
Confidence 346788999999999999998888888888999999988764433
No 80
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=29.14 E-value=59 Score=26.22 Aligned_cols=110 Identities=8% Similarity=0.017 Sum_probs=60.4
Q ss_pred CCCccccHHHHHHhh----cCCceeeEEEe-CC--Ccc--CCCCCCCCCCCHHH---HHHHHHHHHHHHHHH--HhCC-C
Q 012338 133 DLRVHDNESLNTANN----ESVSVLPVYCF-DP--RDY--GKSSSGFDKTGPYR---ASFLIESVSDLRKNL--QARG-S 197 (465)
Q Consensus 133 DLRl~DN~AL~~A~~----~~~~vl~vyi~-dp--~~~--~~~~~g~~~~~~~r---~~FllesL~dL~~~L--~~~G-i 197 (465)
|.--....+|..|.. .+..|..++++ ++ ... .. .+........ ..-..+.|+++ +.+ ...| +
T Consensus 12 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 88 (138)
T 1q77_A 12 DAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVT--FGLPFPPEIKEESKKRIERRLREV-WEKLTGSTEIP 88 (138)
T ss_dssp STTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHH--HCCCCCTHHHHHHHHHHHHHHHHH-HHHHHSCCCCC
T ss_pred cCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccc--cCCCCChHHHHHHHHHHHHHHHHH-HHHhhccCCcc
Confidence 333345567776653 35678889988 62 110 00 0000001111 11223344555 442 3334 5
Q ss_pred cEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEE
Q 012338 198 DLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (465)
Q Consensus 198 ~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~ 252 (465)
...+..|++.+.|.+.+++.+++-|++-..- . ....+.+...+++|..
T Consensus 89 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g-~------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 89 GVEYRIGPLSEEVKKFVEGKGYELVVWACYP-S------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp CEEEECSCHHHHHHHHHTTSCCSEEEECSCC-G------GGTHHHHHHSSSEEEE
T ss_pred eEEEEcCCHHHHHHHHHHhcCCCEEEEeCCC-C------chHHHHHHhCCCceEe
Confidence 5677889999999999999999999986542 1 2223344555666653
No 81
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=29.05 E-value=1.5e+02 Score=27.68 Aligned_cols=128 Identities=11% Similarity=-0.031 Sum_probs=69.0
Q ss_pred CCCeEEEEEeCCCCccccHHHHHHh----hcCCceeeEEEeCCCccCCCCCCCCCCCH-H---HHHHHHHHHHHHHHHHH
Q 012338 122 IRRASIVWFRNDLRVHDNESLNTAN----NESVSVLPVYCFDPRDYGKSSSGFDKTGP-Y---RASFLIESVSDLRKNLQ 193 (465)
Q Consensus 122 ~~~~~LvWFRrDLRl~DN~AL~~A~----~~~~~vl~vyi~dp~~~~~~~~g~~~~~~-~---r~~FllesL~dL~~~L~ 193 (465)
..+..|+=. |.--....+|..|+ ..+..|..++++++...... .+ .... . ...-..+.|.++.+.++
T Consensus 18 ~~~~ILv~~--D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (309)
T 3cis_A 18 SSLGIIVGI--DDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWL-EV--PLPPGVLRWQQDHGRHLIDDALKVVE 92 (309)
T ss_dssp CTTEEEEEC--CSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTT-CC--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEE--CCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccc-cC--CCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 334444433 33334455666654 34678999999886432100 00 1111 1 11223445666677777
Q ss_pred hC-----CCcE--EEEeCChHHHHHHHHHHhCCCEEEEeccC-ChhHH-HHHHHHHHHHHhcCCeEEEeeCC
Q 012338 194 AR-----GSDL--VVRVGKPETVLVELAKAIGADAVYAHREV-SHDEV-KSEEKIEAAMKDEGIEVKYFWGS 256 (465)
Q Consensus 194 ~~-----Gi~L--~v~~G~~~~vL~~L~~~~~a~~V~~n~e~-~p~e~-~rd~~v~~~l~~~gI~v~~~~~~ 256 (465)
+. |+++ .+..|++.+.|.+.++ +++-|++-..- ..... -.-....+.+...+++|..+...
T Consensus 93 ~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 162 (309)
T 3cis_A 93 QASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDE 162 (309)
T ss_dssp HHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTT
T ss_pred HhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCC
Confidence 65 7665 4567999999999886 78888876542 11110 01122344455568888766543
No 82
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=28.99 E-value=1.5e+02 Score=26.78 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=63.6
Q ss_pred cccHHHHHHh----hcCCceeeEEEeCCCccCCC-CCCCC----CC-------CHHHHHHHHHHHHHHHHHHHhCCCcE-
Q 012338 137 HDNESLNTAN----NESVSVLPVYCFDPRDYGKS-SSGFD----KT-------GPYRASFLIESVSDLRKNLQARGSDL- 199 (465)
Q Consensus 137 ~DN~AL~~A~----~~~~~vl~vyi~dp~~~~~~-~~g~~----~~-------~~~r~~FllesL~dL~~~L~~~Gi~L- 199 (465)
....+|..|. ..+.+|..++++++...... ..+.. .. ......-..+.|.++.+.+++.|++.
T Consensus 12 ~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~ 91 (268)
T 3ab8_A 12 QARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQSALAAGVAVE 91 (268)
T ss_dssp GGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 3445666654 34678999998864321000 00000 00 00111233455667777777888765
Q ss_pred -EEEeCChHHHHHHHHHHhCCCEEEEeccCCh--hHH-HHHHHHHHHHHhcCCeEEEee
Q 012338 200 -VVRVGKPETVLVELAKAIGADAVYAHREVSH--DEV-KSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 200 -~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p--~e~-~rd~~v~~~l~~~gI~v~~~~ 254 (465)
.+..|++.+.|.+. +.+++-|++-..-.. ... -.-....+.+...++++..+.
T Consensus 92 ~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~ 148 (268)
T 3ab8_A 92 AVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAP 148 (268)
T ss_dssp EEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEEC
T ss_pred EEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEEC
Confidence 45679999999888 779999988754211 110 011223444455678887654
No 83
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=28.64 E-value=4e+02 Score=25.58 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=66.3
Q ss_pred CeEEEEEeCCCCccccHH-HHHHhhcCCceeeEEEeCCCccCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 012338 124 RASIVWFRNDLRVHDNES-LNTANNESVSVLPVYCFDPRDYGKSSSGFDKTG-PYRASFLIESVSDLRKNLQARGSDLVV 201 (465)
Q Consensus 124 ~~~LvWFRrDLRl~DN~A-L~~A~~~~~~vl~vyi~dp~~~~~~~~g~~~~~-~~r~~FllesL~dL~~~L~~~Gi~L~v 201 (465)
++.|.-+-.|-+-..+.- |..+.....-++-|.-+-|..- ... ..| |+.|++.|+++|+.-.+
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~~~G~ltv~~i~p~~~--------~~~l~~q-------l~~l~~~l~~r~v~a~~ 84 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITYPKGSVKLLGLAGNTD--------KENLLSQ-------LPSISEGFQEEGVFSSW 84 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHTTTCEEEEEECC---C--------TTCHHHH-------HHHHHHHHHHTTCEEEE
T ss_pred CCcEEEecCCchhhhhHHHHHHHhccCceeEEEEEEccCCC--------ccHHHHH-------HHHHHHHHHhCCceeEE
Confidence 345666666655332221 2233444444666666555421 111 222 37778899999998766
Q ss_pred Ee---CChHHHHHHHHHHhCC-----CEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEe
Q 012338 202 RV---GKPETVLVELAKAIGA-----DAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 202 ~~---G~~~~vL~~L~~~~~a-----~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (465)
.. .++.+.+..+++.||. +.|+....-.+.....-..+-+.+.+.+..|..+
T Consensus 85 ~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y~~~i~~~~~~~~nVlil 144 (294)
T 3g40_A 85 TIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIREIIRKASMYRMGVLLF 144 (294)
T ss_dssp EEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHHHHHHHHHHHhCceEEEE
Confidence 53 6778889999999976 5788766655555555455555666677777655
No 84
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=28.58 E-value=2e+02 Score=25.57 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=48.1
Q ss_pred hCCCcEEEEeCChHHHHHHHHHHh--C-CCEEEEec-cCChhHHHHHHHHHHHHHhcCCeEEEeeCCeeeeCCC
Q 012338 194 ARGSDLVVRVGKPETVLVELAKAI--G-ADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDD 263 (465)
Q Consensus 194 ~~Gi~L~v~~G~~~~vL~~L~~~~--~-a~~V~~n~-e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~~L~~p~~ 263 (465)
++|+.|.++..+.+..|.+.+.+. + ++.|+.|- .|+.... .+++.+..-++++..++-..++..+.
T Consensus 51 ~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~ 120 (176)
T 2c4w_A 51 NLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSI----AIADAIMLAGKPVIEVHLTNIQAREE 120 (176)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCH----HHHHHHHTSSSCEEEEESSCGGGSCG
T ss_pred cCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCcccccc
Confidence 678899999988887776666553 2 67888884 5565655 45666666799999988877776543
No 85
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=28.45 E-value=1.8e+02 Score=27.91 Aligned_cols=68 Identities=9% Similarity=0.124 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhC-------CCcEEEEeCChHHHHHHHHHHhCCCEEEEec---cCChhHHHHHHHHHHHHHhcCCeE
Q 012338 181 LIESVSDLRKNLQAR-------GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEV 250 (465)
Q Consensus 181 llesL~dL~~~L~~~-------Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~---e~~p~e~~rd~~v~~~l~~~gI~v 250 (465)
+.+-|.+|++++++. |-.+++.+. .+.-|++.+|.+.+.... +-+|...+ -+++.+.+++.+|.+
T Consensus 175 ~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~----af~Yfa~~yGl~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~v~~ 249 (313)
T 1toa_A 175 YQQQLDKLDAYVRRKAQSLPAERRVLVTAHD----AFGYFSRAYGFEVKGLQGVSTASEASAHD-MQELAAFIAQRKLPA 249 (313)
T ss_dssp HHHHHHHHHHHHHHHHHTSCGGGCEEEEEES----CCHHHHHHHTCEEEEEECSSCSSCCCHHH-HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHhhCCccCCEEEEECC----cHHHHHHHCCCeEEEeeccCCCCCCCHHH-HHHHHHHHHHcCCCE
Confidence 445566666655432 445666653 577889999998775532 23344333 356777888899988
Q ss_pred EEe
Q 012338 251 KYF 253 (465)
Q Consensus 251 ~~~ 253 (465)
..+
T Consensus 250 If~ 252 (313)
T 1toa_A 250 IFI 252 (313)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 86
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=28.30 E-value=71 Score=27.00 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCh
Q 012338 182 IESVSDLRKNLQARGSDLVVRVGKP 206 (465)
Q Consensus 182 lesL~dL~~~L~~~Gi~L~v~~G~~ 206 (465)
+.++.++=+.|++.|+++.|..+.+
T Consensus 29 ~~g~~~~l~~L~~~g~~~~i~Tn~~ 53 (179)
T 3l8h_A 29 LPGSLQAIARLTQADWTVVLATNQS 53 (179)
T ss_dssp CTTHHHHHHHHHHTTCEEEEEEECT
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCC
Confidence 3455566667788899999988765
No 87
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=28.28 E-value=89 Score=30.75 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-+..+.+.+++.|..+.+...+......+.+...+++.|+.... +..+.+.+.+.||++..++.
T Consensus 38 f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~vDGiIi~~~--------~~~~~~~l~~~~iPvV~i~~ 105 (412)
T 4fe7_A 38 YDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWLGDGVIADFD--------DKQIEQALADVDVPIVGVGG 105 (412)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CCCSEEEEETT--------CHHHHHHHTTCCSCEEEEEE
T ss_pred hhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCCCCEEEEecC--------ChHHHHHHhhCCCCEEEecC
Confidence 555666777788888999998876543333344555678999988321 12345566778999998764
No 88
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=27.92 E-value=1.7e+02 Score=26.22 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHH----hCCCEEEE-eccCChhHHHHHHHHHHHHHhcCCeEEE
Q 012338 178 ASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKA----IGADAVYA-HREVSHDEVKSEEKIEAAMKDEGIEVKY 252 (465)
Q Consensus 178 ~~FllesL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~----~~a~~V~~-n~e~~p~e~~rd~~v~~~l~~~gI~v~~ 252 (465)
..+|.++...+...+ ..|..|+|.-.........+++. -|+..|++ .++|..+.... ..-.+.|++.||+|..
T Consensus 67 ~~Ai~~a~~~l~~~~-~~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~-~~g~~~L~~aGI~V~~ 144 (190)
T 2nyt_A 67 EAFFNTILPAFDPAL-RYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEI-QAALKKLKEAGCKLRI 144 (190)
T ss_pred HHHHHHHHHhcCccc-cCCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHH-HHHHHHHHHCCCEEEE
Confidence 456665544333222 23888888654433333333332 28998877 56664222111 2445677889999984
No 89
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=27.84 E-value=2.2e+02 Score=26.25 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCcEEEEe--CChHHHHHHHHHHh--CCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEee
Q 012338 184 SVSDLRKNLQARGSDLVVRV--GKPETVLVELAKAI--GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 184 sL~dL~~~L~~~Gi~L~v~~--G~~~~vL~~L~~~~--~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (465)
++.-|+..+++.|.+++|-. |....++..++.+. .+..|+++..+.+.+. .+.+++.+++.||+++.+.
T Consensus 33 ~~~~l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~~~v~vv~idtg~~~~et--~~~~~~~~~~~gi~~~v~~ 105 (252)
T 2o8v_A 33 AEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPET--YRFIDELTDKLKLNLKVYR 105 (252)
T ss_dssp HHHHHHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCBCHHH--HHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCHHH--HHHHHHHHHHhCCceEEEc
Confidence 44556667777776666653 44556777777776 4566677666654433 3457777788899988764
No 90
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=27.77 E-value=2.1e+02 Score=25.85 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCCh-H---HHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVGKP-E---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G~~-~---~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-+..+++.+++.|..+.+...+. . ..+.+.+...+++.|++.-..... ...+.+.+.||++..++.
T Consensus 27 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 27 FFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND------RIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh------HHHHHHHHCCCCEEEECC
Confidence 666777888889999999998876432 2 223344455689998874321111 234455677999988764
Q ss_pred C
Q 012338 256 S 256 (465)
Q Consensus 256 ~ 256 (465)
.
T Consensus 101 ~ 101 (292)
T 3k4h_A 101 P 101 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 91
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=27.67 E-value=2.3e+02 Score=27.18 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHhC-------CCcEEEEeCChHHHHHHHHHHhCCCEEEEe---ccCChhHHHHHHHHHHHHHhc
Q 012338 177 RASFLIESVSDLRKNLQAR-------GSDLVVRVGKPETVLVELAKAIGADAVYAH---REVSHDEVKSEEKIEAAMKDE 246 (465)
Q Consensus 177 r~~FllesL~dL~~~L~~~-------Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n---~e~~p~e~~rd~~v~~~l~~~ 246 (465)
+..=+.+-|.+|++++++. +-.+++.+ +.+.-|++.+|.+.++.. .+-+|...+ -+++.+.+++.
T Consensus 164 Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H----~af~Yfa~~yGl~~~~~~~i~~~~ePs~~~-l~~l~~~ik~~ 238 (307)
T 3ujp_A 164 NAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTPKQ-VQTVIEEVKTN 238 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSCCSSCCCHHH-HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCEEEEEC----chHHHHHHHCCCcEEEeeccCCCCCCCHHH-HHHHHHHHHhc
Confidence 3344556677787777652 23355554 357889999999987543 233444333 45688888999
Q ss_pred CCeEEEe
Q 012338 247 GIEVKYF 253 (465)
Q Consensus 247 gI~v~~~ 253 (465)
+|++..+
T Consensus 239 ~v~~If~ 245 (307)
T 3ujp_A 239 NVPTIFC 245 (307)
T ss_dssp TCSEEEE
T ss_pred CCcEEEE
Confidence 9998754
No 92
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=27.50 E-value=86 Score=30.74 Aligned_cols=40 Identities=25% Similarity=0.080 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEE
Q 012338 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAV 222 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V 222 (465)
+-+..+++-|+.+|++.++..|+..+++..|+++--+..|
T Consensus 127 ~~~~~~~~lL~~~gi~~i~ap~EADa~ia~La~~g~~~~I 166 (346)
T 2izo_A 127 IMVEESKKLLRAMGIPIVQAPSEGEAEAAYLNKLGLSWAA 166 (346)
T ss_dssp HHHHHHHHHHHHHTCCEEECSSCHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHHHHHHHCCCCEEEcCCcHHHHHHHHHhCCCeEEE
Confidence 4566777778888999888888888888888875223444
No 93
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=27.39 E-value=2.3e+02 Score=25.92 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeCC-hH---HHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEee
Q 012338 179 SFLIESVSDLRKNLQARGSDLVVRVGK-PE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 179 ~FllesL~dL~~~L~~~Gi~L~v~~G~-~~---~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (465)
.|..+-+..+.+.+++.|..+.+...+ .. ..+.+.+...+++.|+..-..... .+.+.+.+.|+++..++
T Consensus 25 ~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~------~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 25 PFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEND------PIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTC------HHHHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccCh------HHHHHHHhCCCCEEEEC
Confidence 377777888899999999999887543 21 233445555689998875322111 23344567799998876
Q ss_pred CC
Q 012338 255 GS 256 (465)
Q Consensus 255 ~~ 256 (465)
..
T Consensus 99 ~~ 100 (295)
T 3hcw_A 99 KP 100 (295)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 94
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.31 E-value=1.5e+02 Score=23.62 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeC--ChHHHHHHHHHHhCCCEEEEe
Q 012338 183 ESVSDLRKNLQARGSDLVVRVG--KPETVLVELAKAIGADAVYAH 225 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G--~~~~vL~~L~~~~~a~~V~~n 225 (465)
+.|+.++.-+++.|..+...+. +-.+.+.+|+++|+++.|+.-
T Consensus 13 etlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvv 57 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVV 57 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEE
Confidence 4566677777777877766553 233667788888888776654
No 95
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=26.86 E-value=3.5e+02 Score=25.20 Aligned_cols=72 Identities=11% Similarity=0.193 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC--ChHHH--HHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG--KPETV--LVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G--~~~~v--L~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-+..+.+.+++.|..+.+... ++... +.+.+...+++.|+..-.... +..+.+.+++.||++..++.
T Consensus 77 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 77 YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-----VDEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-----HHHHHHHHHHCSSCEEEESS
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-----hHHHHHHHHcCCCCEEEEcC
Confidence 6666778888899999999988764 33321 233444568999887542211 12355666778999987754
Q ss_pred C
Q 012338 256 S 256 (465)
Q Consensus 256 ~ 256 (465)
.
T Consensus 152 ~ 152 (338)
T 3dbi_A 152 R 152 (338)
T ss_dssp C
T ss_pred C
Confidence 3
No 96
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=26.05 E-value=2e+02 Score=26.40 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeCCh-H---HHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEee
Q 012338 179 SFLIESVSDLRKNLQARGSDLVVRVGKP-E---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 179 ~FllesL~dL~~~L~~~Gi~L~v~~G~~-~---~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (465)
.|..+-+..+++.++++|..+.+...+. . ..+.+.+...+++.|++.-..... ...+.+.+.||++..++
T Consensus 40 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~~l~~~~iPvV~i~ 113 (305)
T 3huu_A 40 PFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD------PIEHLLNEFKVPYLIVG 113 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC------HHHHHHHHTTCCEEEES
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc------HHHHHHHHcCCCEEEEC
Confidence 4677777888889999999998876432 1 233445555689998875321111 23345567799999887
Q ss_pred CCe
Q 012338 255 GST 257 (465)
Q Consensus 255 ~~~ 257 (465)
...
T Consensus 114 ~~~ 116 (305)
T 3huu_A 114 KSL 116 (305)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 97
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=25.69 E-value=70 Score=29.99 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=14.5
Q ss_pred HHHHHHHhCCCcEEEEeCChHHHHHHHHHHhC
Q 012338 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIG 218 (465)
Q Consensus 187 dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~ 218 (465)
++-+.|++.|++++++.|+....+..++++.|
T Consensus 148 e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g 179 (297)
T 4fe3_A 148 NFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAG 179 (297)
T ss_dssp HHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcC
Confidence 33334444444444444444444444444444
No 98
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=25.56 E-value=3.7e+02 Score=24.13 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=46.1
Q ss_pred HHHhCCCcEEEEeCChHHHHHHHHHHhCC----CEEEE----------------eccCChhHHHHHHHHHHHHHhcCCeE
Q 012338 191 NLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYA----------------HREVSHDEVKSEEKIEAAMKDEGIEV 250 (465)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a----~~V~~----------------n~e~~p~e~~rd~~v~~~l~~~gI~v 250 (465)
+|++.|+.+.+..|.+...+..++++.+. .-+++ ....... .-+.+.+.+++.++.+
T Consensus 33 ~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGa~i~~~~~~~~~~~~~l~~~---~~~~i~~~~~~~~~~~ 109 (279)
T 4dw8_A 33 RIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWESKEMMYENVLPNE---VVPVLYECARTNHLSI 109 (279)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHHHHTTGGGTTCEEEEGGGTEEEETTTCCEEEECCCCGG---GHHHHHHHHHHTTCEE
T ss_pred HHHHCCCEEEEEcCCChHHHHHHHHHhCCCCCCCEEEEeCCeEEEECCCCeEEEEecCCHH---HHHHHHHHHHHcCCEE
Confidence 45677999999999998888888888775 22221 1112222 2345667778889999
Q ss_pred EEeeCCeeeeC
Q 012338 251 KYFWGSTLYHL 261 (465)
Q Consensus 251 ~~~~~~~L~~p 261 (465)
..+.+..++..
T Consensus 110 ~~~~~~~~~~~ 120 (279)
T 4dw8_A 110 LTYDGAEIVTE 120 (279)
T ss_dssp EEEETTEEEES
T ss_pred EEEECCEEEEe
Confidence 88887776653
No 99
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=25.55 E-value=2.9e+02 Score=24.50 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCC--hHH--HHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVGK--PET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G~--~~~--vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-+..+++.++++|..+.+...+ +.. .+.+.+...+++.|+..-..... + ...+.+.+.||++..++.
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~----~-~~~~~~~~~~iPvV~~~~ 90 (272)
T 3o74_A 16 SYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE----D-DSYRELQDKGLPVIAIDR 90 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS----C-CHHHHHHHTTCCEEEESS
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc----H-HHHHHHHHcCCCEEEEcc
Confidence 66666777888899999999888643 322 22333445689998875432111 1 123345667999987754
Q ss_pred C
Q 012338 256 S 256 (465)
Q Consensus 256 ~ 256 (465)
.
T Consensus 91 ~ 91 (272)
T 3o74_A 91 R 91 (272)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=25.32 E-value=2.2e+02 Score=23.96 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEE
Q 012338 210 LVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (465)
Q Consensus 210 L~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~ 251 (465)
+.+++++..++-|+...+-......-+..+++.+-+.+|++.
T Consensus 88 i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 88 IRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLL 129 (143)
T ss_dssp HHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeE
Confidence 444555555555555443322222233455555556666554
No 101
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=24.98 E-value=1.2e+02 Score=26.70 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCC----CEEEEeccCChhHHHHHHHHHHHHHhcCCe
Q 012338 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (465)
Q Consensus 185 L~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a----~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~ 249 (465)
+.++-+.|++.|+++.+..+.....+..+++..++ +.+++..+.... .---..+...+++.|+.
T Consensus 115 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~~g~~ 182 (240)
T 3sd7_A 115 MKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDGTR-VNKNEVIQYVLDLCNVK 182 (240)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTSCC-CCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcHhhEEEEEeccccCCC-CCCHHHHHHHHHHcCCC
Confidence 34555667777888888877766777777777664 455555444311 10112344455555654
No 102
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=24.73 E-value=3.9e+02 Score=25.73 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEE-EeC-ChHHHHHHHHHHh------CCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEE
Q 012338 180 FLIESVSDLRKNLQARGSDLVV-RVG-KPETVLVELAKAI------GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v-~~G-~~~~vL~~L~~~~------~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~ 251 (465)
...+++.-|++.+++.+ +++| +.| ....++..|+.+. .+..|+++..+.+.+. .+.+.+.+++.||++.
T Consensus 31 le~~a~~ilr~~~~~~~-~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~et--~~~v~~~~~~~gi~l~ 107 (325)
T 1zun_A 31 LEAESIHIIREVAAEFD-NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEM--YRFRDQMVEEMGLDLI 107 (325)
T ss_dssp HHHHHHHHHHHHHHHCS-SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHH--HHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHHHhCC-CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHHH--HHHHHHHHHHcCCCEE
Confidence 45568888888888866 4444 444 4445777777765 5678888877765433 4567777888899998
Q ss_pred EeeC
Q 012338 252 YFWG 255 (465)
Q Consensus 252 ~~~~ 255 (465)
.+.-
T Consensus 108 v~~~ 111 (325)
T 1zun_A 108 THIN 111 (325)
T ss_dssp EECC
T ss_pred EEeC
Confidence 7653
No 103
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=24.44 E-value=3.2e+02 Score=24.31 Aligned_cols=65 Identities=11% Similarity=0.292 Sum_probs=41.0
Q ss_pred HHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEE--------------eccCChhHHHHHHHHHHHHHhcCCeEEEeeCC
Q 012338 191 NLQARGSDLVVRVGKPETVLVELAKAIGADAVYA--------------HREVSHDEVKSEEKIEAAMKDEGIEVKYFWGS 256 (465)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~--------------n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~~ 256 (465)
.|++.|+.+.+..|.+...+..+.++.+...+++ ...... ..-+.+.+.+++.|+.+..+.+.
T Consensus 31 ~l~~~G~~~~~aTGR~~~~~~~~~~~l~~~~~i~~nGa~i~~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~ 107 (258)
T 2pq0_A 31 RLKQSGVYVAIATGRAPFMFEHVRKQLGIDSFVSFNGQYVVFEGNVLYKQPLRR---EKVRALTEEAHKNGHPLVFMDAE 107 (258)
T ss_dssp HHHHTTCEEEEECSSCGGGSHHHHHHHTCCCEEEGGGTEEEETTEEEEECCCCH---HHHHHHHHHHHHTTCCEEEECSS
T ss_pred HHHHCCCEEEEECCCChHHHHHHHHhcCCCEEEECCCCEEEECCEEEEEecCCH---HHHHHHHHHHHhCCCeEEEEeCC
Confidence 4567799999999987776777777766543221 122222 22345666777888888776554
Q ss_pred ee
Q 012338 257 TL 258 (465)
Q Consensus 257 ~L 258 (465)
.+
T Consensus 108 ~~ 109 (258)
T 2pq0_A 108 KM 109 (258)
T ss_dssp CE
T ss_pred cE
Confidence 43
No 104
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.39 E-value=3.7e+02 Score=24.10 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC--ChH---HHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEee
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G--~~~---~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (465)
|..+-+..+++.+++.|..+.+... +.. +.+..+. +.+++.|+..-..... . ..+.+.+.+.||++..++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~-~---~~~~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 22 FAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFV-HLKVDAIFITTLDDVY-I---GSAIEEAKKAGIPVFAID 96 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHH-HTTCSEEEEECSCTTT-T---HHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEecCChHH-H---HHHHHHHHHcCCCEEEec
Confidence 6666677888889999999988764 333 2333333 4689988875322111 1 122344556799999876
Q ss_pred CC
Q 012338 255 GS 256 (465)
Q Consensus 255 ~~ 256 (465)
..
T Consensus 97 ~~ 98 (293)
T 3l6u_A 97 RM 98 (293)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 105
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=24.33 E-value=98 Score=26.50 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=31.1
Q ss_pred HHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEe
Q 012338 188 LRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (465)
Q Consensus 188 L~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n 225 (465)
+=+.|++.|+++.+..|.+...+..++++.++..++..
T Consensus 43 ~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~ 80 (180)
T 1k1e_A 43 GIKMLMDADIQVAVLSGRDSPILRRRIADLGIKLFFLG 80 (180)
T ss_dssp HHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCceeecC
Confidence 33456678999999999998889999999999887643
No 106
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=23.88 E-value=1e+02 Score=26.38 Aligned_cols=41 Identities=5% Similarity=-0.125 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEE
Q 012338 182 IESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAV 222 (465)
Q Consensus 182 lesL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V 222 (465)
+..|+++.+++++.|..++.+..+..+.+.++++++++.-.
T Consensus 71 l~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~ 111 (179)
T 3ixr_A 71 GLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFP 111 (179)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceE
Confidence 56788999999999999888887877888899998877643
No 107
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=23.81 E-value=3.2e+02 Score=24.17 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEe----CChH---HHHHHHHHHhC-CCEEEEeccCChhHHHHHHHHHHHHHhcCCeEE
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRV----GKPE---TVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~----G~~~---~vL~~L~~~~~-a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~ 251 (465)
|..+-++.+++.++++|..+.+.. +++. +.+..+++. + ++.|+..-.-... .....+.+.+.||++.
T Consensus 14 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~vdgii~~~~~~~~----~~~~~~~~~~~~ipvV 88 (276)
T 3ksm_A 14 YWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQ-APPDALILAPNSAED----LTPSVAQYRARNIPVL 88 (276)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHH-SCCSEEEECCSSTTT----THHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCCCHHH----HHHHHHHHHHCCCcEE
Confidence 566667778888889999998875 2333 244455554 6 9998875421111 1123344567799999
Q ss_pred EeeCC
Q 012338 252 YFWGS 256 (465)
Q Consensus 252 ~~~~~ 256 (465)
.++..
T Consensus 89 ~~~~~ 93 (276)
T 3ksm_A 89 VVDSD 93 (276)
T ss_dssp EESSC
T ss_pred EEecC
Confidence 87643
No 108
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=23.78 E-value=2e+02 Score=26.18 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCE----------EEE-eccC---ChhHHHHHHHHHHHHHhcCCeE
Q 012338 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADA----------VYA-HREV---SHDEVKSEEKIEAAMKDEGIEV 250 (465)
Q Consensus 185 L~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~----------V~~-n~e~---~p~e~~rd~~v~~~l~~~gI~v 250 (465)
.+.|++ ++.|+.+.+..|.+...+..+.++.+... |+. +.+. .+-....-+.+.+.+++.++.+
T Consensus 25 ~~al~~--~~~Gi~v~iaTGR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~~~~~~i~~~~l~~~~~~~i~~~~~~~~~~~ 102 (268)
T 1nf2_A 25 RRNIEK--LSRKCYVVFASGRMLVSTLNVEKKYFKRTFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIEYIKPLNVHW 102 (268)
T ss_dssp HHHHHH--HTTTSEEEEECSSCHHHHHHHHHHHSSSCCCEEEGGGTEEEETTTEEEEECCBCHHHHHHHHHHHGGGCCCE
T ss_pred HHHHHH--HhCCCEEEEECCCChHHHHHHHHHhCCCCCeEEEeCCeEEECCCCCEEEecCCCHHHHHHHHHHHHhCCCEE
Confidence 344444 57899999999998888888888887753 332 1111 0111223345667777778887
Q ss_pred EEeeCCeee
Q 012338 251 KYFWGSTLY 259 (465)
Q Consensus 251 ~~~~~~~L~ 259 (465)
..+.+..++
T Consensus 103 ~~~~~~~~~ 111 (268)
T 1nf2_A 103 QAYIDDVLY 111 (268)
T ss_dssp EEECSSCEE
T ss_pred EEEECCEEE
Confidence 777655544
No 109
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=23.55 E-value=1.4e+02 Score=26.01 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCC
Q 012338 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGA 219 (465)
Q Consensus 187 dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a 219 (465)
++=+.|++.|+++.+..+.....+..+++..++
T Consensus 90 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl 122 (222)
T 2nyv_A 90 YTLEALKSKGFKLAVVSNKLEELSKKILDILNL 122 (222)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 333445556666666666655555556666553
No 110
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=23.42 E-value=4.4e+02 Score=24.76 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC--ChHH--HHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG--KPET--VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G--~~~~--vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-+..+.+.+++.|..+.+... ++.. .+.+.+...+++.|+..-..... ...+.+.+.||++..+++
T Consensus 84 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~------~~~~~l~~~~iPvV~i~~ 157 (355)
T 3e3m_A 84 HFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE------QTIRLLQRASIPIVEIWE 157 (355)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH------HHHHHHHHCCSCEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH------HHHHHHHhCCCCEEEECC
Confidence 5666778888899999999988764 3322 22233345689988875322211 233456678999998754
No 111
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=23.36 E-value=3.1e+02 Score=25.68 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHh-----CCCcEEEEeCChHHHHHHHHHHhCCCEEEEec---cCChhHHHHHHHHHHHHHhcCCeEE
Q 012338 180 FLIESVSDLRKNLQA-----RGSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEVK 251 (465)
Q Consensus 180 FllesL~dL~~~L~~-----~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~---e~~p~e~~rd~~v~~~l~~~gI~v~ 251 (465)
=+.+-|.+|++++++ .|-.+++.+. .+.-|++.+|.+.+.... +-+|...+ -+++.+.+++.+|.+.
T Consensus 156 ~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~----af~Yf~~~yGl~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~v~~i 230 (284)
T 3cx3_A 156 AFIKKAQELTKKFQPKFEKATQKTFVTQHT----AFSYLAKRFGLNQLGIAGISPEQEPSPRQ-LTEIQEFVKTYKVKTI 230 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCCCEEEEES----CCHHHHHHTTCCEEEEECSSTTCCCCSHH-HHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEECC----chHHHHHHcCCEEeeccCCCCCCCCCHHH-HHHHHHHHHHcCCCEE
Confidence 344566666665544 2455666653 477899999999876542 22333333 3567778888999876
Q ss_pred Ee
Q 012338 252 YF 253 (465)
Q Consensus 252 ~~ 253 (465)
.+
T Consensus 231 f~ 232 (284)
T 3cx3_A 231 FT 232 (284)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 112
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.26 E-value=4.2e+02 Score=23.94 Aligned_cols=72 Identities=14% Similarity=0.023 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC-ChHH---HHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG-KPET---VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G-~~~~---vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-++.+++.++++|..+++... ++.+ .+..+.+ .+++.|+..-.- ... ...+.+.+.+.||++..++.
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~-~~vdgiii~~~~-~~~---~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 16 WFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAA-SGAKGFVICTPD-PKL---GSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHH-TTCCEEEEECSC-GGG---HHHHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEEeCCC-chh---hHHHHHHHHHCCCcEEEeCC
Confidence 6667777888888899999987764 3332 3334443 479988875422 111 12223345667999998874
Q ss_pred C
Q 012338 256 S 256 (465)
Q Consensus 256 ~ 256 (465)
.
T Consensus 91 ~ 91 (306)
T 8abp_A 91 Q 91 (306)
T ss_dssp C
T ss_pred C
Confidence 3
No 113
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=23.21 E-value=3.4e+02 Score=22.92 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEe
Q 012338 184 SVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAH 225 (465)
Q Consensus 184 sL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n 225 (465)
.+.++-+.|++.|+++.+..+.+...+..+++..++..++.+
T Consensus 79 ~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~ 120 (217)
T 3m1y_A 79 GALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSN 120 (217)
T ss_dssp THHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcchhccc
Confidence 355666778889999999998888888889999998866543
No 114
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=22.92 E-value=3e+02 Score=26.43 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhC-------CCcEEEEeCChHHHHHHHHHHhCCCEEEEec---cCChhHHHHHHHHHHHHHhcCC
Q 012338 179 SFLIESVSDLRKNLQAR-------GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGI 248 (465)
Q Consensus 179 ~FllesL~dL~~~L~~~-------Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~---e~~p~e~~rd~~v~~~l~~~gI 248 (465)
.=+.+-|.+|++++++. +-.+++.+ +.+.-|++.+|.+.+.... +-+|...+ -..+.+.+++.+|
T Consensus 180 ~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H----~af~Yfa~~yGL~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~v 254 (321)
T 1xvl_A 180 AVYSEQLKAIDRQLGADLEQVPANQRFLVSCE----GAFSYLARDYGMEEIYMWPINAEQQFTPKQ-VQTVIEEVKTNNV 254 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEE----STTHHHHHHTTCEEEEEESSSSSCSCCHHH-HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccCCEEEEEC----chHHHHHHHCCCeEEEeeccCCCCCCCHHH-HHHHHHHHHHcCC
Confidence 33455677777766542 34566655 3577899999998776532 23444443 3567788888999
Q ss_pred eEEEe
Q 012338 249 EVKYF 253 (465)
Q Consensus 249 ~v~~~ 253 (465)
.+..+
T Consensus 255 ~~If~ 259 (321)
T 1xvl_A 255 PTIFC 259 (321)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88754
No 115
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=22.90 E-value=1.3e+02 Score=25.97 Aligned_cols=64 Identities=23% Similarity=0.268 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCC----CEEEEeccCChhHHHHHHHHHHHHHhcCCe
Q 012338 185 VSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (465)
Q Consensus 185 L~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a----~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~ 249 (465)
+.++-+.|++.|+++.+..+.....+..+++..++ +.+++..++... .---..+...+++.|+.
T Consensus 91 ~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~-kp~~~~~~~~~~~lgi~ 158 (226)
T 3mc1_A 91 IEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFYFDAIVGSSLDGKL-STKEDVIRYAMESLNIK 158 (226)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTSSS-CSHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHhheeeeeccCCCCCC-CCCHHHHHHHHHHhCcC
Confidence 34444556666888888777666666777776664 445555444311 11112344455555653
No 116
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=22.89 E-value=3.3e+02 Score=24.71 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCC--------------hHHHHHHHHHHhCCCEEEEeccCChhH----------HHHHHH
Q 012338 183 ESVSDLRKNLQARGSDLVVRVGK--------------PETVLVELAKAIGADAVYAHREVSHDE----------VKSEEK 238 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G~--------------~~~vL~~L~~~~~a~~V~~n~e~~p~e----------~~rd~~ 238 (465)
+.+.++++.|++.|+.+...... ......+++++.|+..|.++-...+.. .+.-+.
T Consensus 48 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~ 127 (286)
T 3dx5_A 48 ETTERELNCLKDKTLEITMISDYLDISLSADFEKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRM 127 (286)
T ss_dssp HHHHHHHHHTGGGTCCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHH
Q ss_pred HHHHHHhcCCeE
Q 012338 239 IEAAMKDEGIEV 250 (465)
Q Consensus 239 v~~~l~~~gI~v 250 (465)
+.+.+++.||.+
T Consensus 128 l~~~a~~~Gv~l 139 (286)
T 3dx5_A 128 ICELFAQHNMYV 139 (286)
T ss_dssp HHHHHHHTTCEE
T ss_pred HHHHHHHhCCEE
No 117
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=22.87 E-value=2.3e+02 Score=26.78 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHhCCCEEEEec---cCChhHHHHHHHHHHHHHhcCCeE
Q 012338 179 SFLIESVSDLRKNLQAR-----GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEV 250 (465)
Q Consensus 179 ~FllesL~dL~~~L~~~-----Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~---e~~p~e~~rd~~v~~~l~~~gI~v 250 (465)
.=+.+-|.+|++++++. |-.+++.+ +.+.-|++.+|.+.+.... +-+|... +-+++.+.+++.+|.+
T Consensus 157 ~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~~~eps~~-~l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 157 KAFKKEAEQLTEEYTQKFKKVRSKTFVTQH----TAFSYLAKRFGLKQLGISGISPEQEPSPR-QLKEIQDFVKEYNVKT 231 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCCEEEEEE----SCCHHHHHHTTCEEEEEECSCC---CCHH-HHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEEC----CchHHHHHHCCCeEeeccccCCCCCCCHH-HHHHHHHHHHHcCCCE
Confidence 33455677777766543 45566555 3577889999998775432 1233333 3456777888899988
Q ss_pred EEe
Q 012338 251 KYF 253 (465)
Q Consensus 251 ~~~ 253 (465)
..+
T Consensus 232 if~ 234 (286)
T 3gi1_A 232 IFA 234 (286)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 118
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=21.54 E-value=1.2e+02 Score=28.76 Aligned_cols=78 Identities=8% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCe
Q 012338 175 PYRASFLIESVSDLRKNLQAR-----GSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIE 249 (465)
Q Consensus 175 ~~r~~FllesL~dL~~~L~~~-----Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~ 249 (465)
..+..=+.+-|.+|++++++. |-.+++.+ +.+.-|++.+|.+.+.....-....-++-+++.+.+++.+|.
T Consensus 164 ~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H----~af~Yf~~~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~ 239 (291)
T 1pq4_A 164 EANLAAFLAELERLNQELGQILQPLPQRKFIVFH----PSWAYFARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLT 239 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESS----CCCHHHHHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEC----CchHHHHHHCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCC
Q ss_pred EEEeeCC
Q 012338 250 VKYFWGS 256 (465)
Q Consensus 250 v~~~~~~ 256 (465)
+..+...
T Consensus 240 ~If~e~~ 246 (291)
T 1pq4_A 240 MVFGETQ 246 (291)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
No 119
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=21.53 E-value=2.6e+02 Score=23.20 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCC----CEEEEeccC
Q 012338 183 ESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGA----DAVYAHREV 228 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a----~~V~~n~e~ 228 (465)
..+.++-+.|++.|.++.+..+...+.+..+++..++ +.+++..+.
T Consensus 92 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~ 141 (214)
T 3e58_A 92 PDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQGFFDIVLSGEEF 141 (214)
T ss_dssp TTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGC
T ss_pred chHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHhheeeEeecccc
Confidence 3455666777888999999888877778888887775 456665544
No 120
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=21.46 E-value=1.3e+02 Score=22.86 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEee
Q 012338 210 LVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 210 L~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (465)
..+.++.-.+.-|+...|.+++ ....+...|++.+|++..+.
T Consensus 19 v~kai~~gkaklViiA~D~~~~---~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 19 TVKALKRGSVKEVVVAKDADPI---LTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHTTTCEEEEEEETTSCHH---HHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHcCCeeEEEEeCCCCHH---HHHHHHHHHHHcCCCEEEEC
Confidence 3344555567777777777762 34567777888888887654
No 121
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=21.22 E-value=3.4e+02 Score=24.22 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEeC--C----------hHHHHHHHHHHhCCCEEEEeccCCh-----hH-HHHHHHHHHHHH
Q 012338 183 ESVSDLRKNLQARGSDLVVRVG--K----------PETVLVELAKAIGADAVYAHREVSH-----DE-VKSEEKIEAAMK 244 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G--~----------~~~vL~~L~~~~~a~~V~~n~e~~p-----~e-~~rd~~v~~~l~ 244 (465)
+.+.++++.|++.|+.+..+.. . -.....+++++.|+..|.++-.... .. .+.-+.+.+.++
T Consensus 51 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~ 130 (272)
T 2q02_A 51 LNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFA 130 (272)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 3467888899999999865542 1 1133456778899999987533211 11 233345556667
Q ss_pred hcCCeEE
Q 012338 245 DEGIEVK 251 (465)
Q Consensus 245 ~~gI~v~ 251 (465)
+.||.+-
T Consensus 131 ~~gv~l~ 137 (272)
T 2q02_A 131 RYDIQGL 137 (272)
T ss_dssp TTTCEEE
T ss_pred HcCCEEE
Confidence 7898764
No 122
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=21.20 E-value=2.9e+02 Score=25.01 Aligned_cols=70 Identities=7% Similarity=0.058 Sum_probs=45.5
Q ss_pred HHHhCCCcEEEEeCChHHHHHHHHHHhCCC-EEEE-------e--ccC---ChhHHHHHHHHHHHHHhcCCeEEEeeCCe
Q 012338 191 NLQARGSDLVVRVGKPETVLVELAKAIGAD-AVYA-------H--REV---SHDEVKSEEKIEAAMKDEGIEVKYFWGST 257 (465)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~-~V~~-------n--~e~---~p~e~~rd~~v~~~l~~~gI~v~~~~~~~ 257 (465)
+|++.|+.+.+..|.+...+..+.+..+.. .+++ + .+. .+-....-+.+.+.+++.++.+..+.+..
T Consensus 34 ~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (290)
T 3dnp_A 34 YVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLHEKY 113 (290)
T ss_dssp HHHHTTCEEEEBCSSCHHHHHHHHHHTTCCSCEEEGGGTEEESSTTSCSEECCCCHHHHHHHHHHHHTSSCEEEEECSSC
T ss_pred HHHHCCCEEEEECCCChHHHHHHHHHcCCCCeEEEcCCeEEEcCCCCEEEecCCCHHHHHHHHHHHHHcCceEEEEECCc
Confidence 446679999999999888888888888765 2221 1 110 01112233556677888899988777665
Q ss_pred eee
Q 012338 258 LYH 260 (465)
Q Consensus 258 L~~ 260 (465)
.+.
T Consensus 114 ~~~ 116 (290)
T 3dnp_A 114 SIG 116 (290)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 123
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=21.15 E-value=2.7e+02 Score=25.39 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=42.1
Q ss_pred HHHhCCCcEEEEeCChHHHHHHHHHHhCCC---------------EEEEeccCChhHHHHHHHHHHHHHhc--CCeEEEe
Q 012338 191 NLQARGSDLVVRVGKPETVLVELAKAIGAD---------------AVYAHREVSHDEVKSEEKIEAAMKDE--GIEVKYF 253 (465)
Q Consensus 191 ~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~---------------~V~~n~e~~p~e~~rd~~v~~~l~~~--gI~v~~~ 253 (465)
+|++.|+.+.+..|.+...+..+.++.+.. .+......... .-+.+.+.+++. ++.+..+
T Consensus 50 ~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~~i~~~~l~~~---~~~~i~~~~~~~~~~~~~~~~ 126 (283)
T 3dao_A 50 RLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTYPMDED---IWKGMCRMVRDELPACDYFAA 126 (283)
T ss_dssp HHHHTTCEEEEECSSCHHHHHHHTGGGGGGCEEEETTTTEEECSSCEEEECCCCHH---HHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHCCCEEEEEcCCCHHHHHHHHHHcCCCcEEEECCCcEEEECCEEEEEecCCHH---HHHHHHHHHHHhcCCceEEEE
Confidence 446679999999999888888887766543 22222222222 234456666666 8888777
Q ss_pred eCCeeee
Q 012338 254 WGSTLYH 260 (465)
Q Consensus 254 ~~~~L~~ 260 (465)
..+..+-
T Consensus 127 ~~~~~~~ 133 (283)
T 3dao_A 127 TPDFCFA 133 (283)
T ss_dssp CSSCEEE
T ss_pred eCCeEEE
Confidence 6665543
No 124
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.12 E-value=2.7e+02 Score=25.25 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeCC----hHHHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVGK----PETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G~----~~~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-+..+.+.++++|..+.+...+ ..+.+..+ ...+++.|+..-... .. ..+ +.+.+ ||++..++.
T Consensus 25 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~-~~----~~~-~~~~~-~iPvV~i~~ 96 (289)
T 3k9c_A 25 FHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQAL-MRERCEAAILLGTRF-DT----DEL-GALAD-RVPALVVAR 96 (289)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHH-TTTTEEEEEEETCCC-CH----HHH-HHHHT-TSCEEEESS
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH-HhCCCCEEEEECCCC-CH----HHH-HHHHc-CCCEEEEcC
Confidence 66667788888999999999887532 22334444 335788887654222 11 223 33445 999988764
Q ss_pred C
Q 012338 256 S 256 (465)
Q Consensus 256 ~ 256 (465)
.
T Consensus 97 ~ 97 (289)
T 3k9c_A 97 A 97 (289)
T ss_dssp C
T ss_pred C
Confidence 3
No 125
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=20.83 E-value=2.7e+02 Score=26.03 Aligned_cols=68 Identities=9% Similarity=0.133 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhC-----CCcEEEEeCChHHHHHHHHHHhCCCEEEEec---cCChhHHHHHHHHHHHHHhcCCeEEE
Q 012338 181 LIESVSDLRKNLQAR-----GSDLVVRVGKPETVLVELAKAIGADAVYAHR---EVSHDEVKSEEKIEAAMKDEGIEVKY 252 (465)
Q Consensus 181 llesL~dL~~~L~~~-----Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~---e~~p~e~~rd~~v~~~l~~~gI~v~~ 252 (465)
+.+-|.+|++++++. |-.+++.+. .+.-|++.+|.+.+.... +-+|...+ -+++.+.+++.+|.+..
T Consensus 154 ~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~----af~Yf~~~yGl~~~~~~~~~~~~eps~~~-l~~l~~~ik~~~v~~if 228 (284)
T 2prs_A 154 FEAQLASTETQVGNELAPLKGKGYFVFHD----AYGYFEKQFGLTPLGHFTVNPEIQPGAQR-LHEIRTQLVEQKATCVF 228 (284)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTCCEEEEES----CCHHHHHHHTCCCCEEEESSTTSCCCHHH-HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEECc----cHHHHHHHCCCeEeEeeccCCCCCCCHHH-HHHHHHHHHHcCCCEEE
Confidence 445566666655432 455666653 577899999998765432 23344333 35677888899999875
Q ss_pred e
Q 012338 253 F 253 (465)
Q Consensus 253 ~ 253 (465)
+
T Consensus 229 ~ 229 (284)
T 2prs_A 229 A 229 (284)
T ss_dssp E
T ss_pred E
Confidence 4
No 126
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=20.56 E-value=3.7e+02 Score=22.55 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=47.8
Q ss_pred CCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEE-----eCChHHHHHHHHHHhCCCEEE
Q 012338 149 SVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVR-----VGKPETVLVELAKAIGADAVY 223 (465)
Q Consensus 149 ~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v~-----~G~~~~vL~~L~~~~~a~~V~ 223 (465)
|.-++|-|++++-+..+. .....+..--..+|..| +.|++.+- +.+. .++..+.+.++|++.++ .|+
T Consensus 31 g~liIP~~Vl~ELq~lA~-----s~d~~~r~rGr~gL~iL-~~L~~~~~-vei~~~~~~~~~vD~~ll~lA~~~~~-~lv 102 (134)
T 3ix7_A 31 GPLWVPHFVLKELQHFAD-----SQDPLRRAKGRRGLETL-ERLREAAP-LEVLETTPKGESVDEKLLFLARDLEA-ALV 102 (134)
T ss_dssp SCEEEEHHHHHHHHHHHT-----CSSHHHHHHHHHHHHHH-HHHHHHSC-EEEECCCCSCSSHHHHHHHHHHHTTC-EEE
T ss_pred CceecHHHHHHHHHHHHh-----ccchhhHHHHHHHHHHH-HHHHhcCC-EEEeCCCCCcccHHHHHHHHHHHhCC-EEE
Confidence 445778888875333221 11222222233455444 33444333 5444 14567889999999986 454
Q ss_pred EeccCChhHHHHHHHHHHHHHhcCCeEEEe
Q 012338 224 AHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 224 ~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (465)
++ | ..+.+.++..||++...
T Consensus 103 Tn-D---------~~L~kvA~~~GI~Vl~l 122 (134)
T 3ix7_A 103 TN-D---------HALLQMARIYGVKALSI 122 (134)
T ss_dssp ES-C---------HHHHHHHHHTTCCEEEH
T ss_pred eC-C---------HHHHHHHHHCCCeEEeh
Confidence 54 2 34566666779998643
No 127
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=20.51 E-value=3.6e+02 Score=24.63 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC--ChH--HHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEeeC
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE--TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWG 255 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G--~~~--~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~~ 255 (465)
|..+-+..+++.++++|..+.+... +.. ..+.+.+...+++.|+..-.....+ +.+. .+.+ ||++..++.
T Consensus 29 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~----~~~~-~l~~-~iPvV~i~~ 102 (303)
T 3kke_A 29 VFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDD----DMLA-AVLE-GVPAVTINS 102 (303)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCH----HHHH-HHHT-TSCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcH----HHHH-HHhC-CCCEEEECC
Confidence 5556667778889999999988763 222 2233344456899888754222211 1233 4455 999988764
Q ss_pred C
Q 012338 256 S 256 (465)
Q Consensus 256 ~ 256 (465)
.
T Consensus 103 ~ 103 (303)
T 3kke_A 103 R 103 (303)
T ss_dssp C
T ss_pred c
Confidence 3
No 128
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=20.45 E-value=2.1e+02 Score=24.36 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCh-HHHHHHHHHHhCCCEEEEec-cCChhHHHHHHHHHHHHHhcCCe
Q 012338 184 SVSDLRKNLQARGSDLVVRVGKP-ETVLVELAKAIGADAVYAHR-EVSHDEVKSEEKIEAAMKDEGIE 249 (465)
Q Consensus 184 sL~dL~~~L~~~Gi~L~v~~G~~-~~vL~~L~~~~~a~~V~~n~-e~~p~e~~rd~~v~~~l~~~gI~ 249 (465)
.+.++=+.|++.|+++.|..+.+ ...+..+++..++...+... -+..... ..+...+++.|+.
T Consensus 72 g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~~~f~~~~~~~~~k~---~~~~~~~~~~~~~ 136 (187)
T 2wm8_A 72 EVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKI---THFERLQQKTGIP 136 (187)
T ss_dssp THHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCTTTEEEEEESSSCHH---HHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcHhhcceeEEEeCchH---HHHHHHHHHcCCC
Confidence 34444455667799999999988 67888888888876443321 1111111 2355556666764
No 129
>2w91_A Endo-beta-N-acetylglucosaminidase D; hydrolase, N-glycan, secreted, oxazoline, NAG-thiazoline, substrate-participation; 1.40A {Streptococcus pneumoniae} PDB: 2w92_A*
Probab=20.40 E-value=1.9e+02 Score=31.13 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=61.4
Q ss_pred eEEEEEeCCCCccccHHHHHHh-hcCCceeeEEEeCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcEEEEe
Q 012338 125 ASIVWFRNDLRVHDNESLNTAN-NESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRV 203 (465)
Q Consensus 125 ~~LvWFRrDLRl~DN~AL~~A~-~~~~~vl~vyi~dp~~~~~~~~g~~~~~~~r~~FllesL~dL~~~L~~~Gi~L~v~~ 203 (465)
.-++| .-+ .=.+++..|+ ++|.+|+..+++++.. +.....++.+-|+ +.-...
T Consensus 93 ~fvyf--h~l--~P~~~widaAHrnGV~VlGT~~fe~~~-----------~~~~~~~~~~lL~------~~~~~~----- 146 (653)
T 2w91_A 93 SMVFW--EGL--VPTPDVIDAGHRNGVPVYGTLFFNWSN-----------SIADQERFAEALK------QDADGS----- 146 (653)
T ss_dssp EEEET--TCS--SCCHHHHHHHHHTTCCEEEEEEEEEEC-----------CHHHHHHHHHHTC------CCTTSC-----
T ss_pred eeecc--ccc--CCCcHHHHHHHHCCCEEEEEEecCccc-----------CCcHHHHHHHHhc------cCccch-----
Confidence 34566 555 4455555544 6789999999888643 2223344433332 011111
Q ss_pred CChHHHHHHHHHHhCCCEEEEeccCCh----hH----HHHHHHHHHHHHhcC--CeEEEeeCC
Q 012338 204 GKPETVLVELAKAIGADAVYAHREVSH----DE----VKSEEKIEAAMKDEG--IEVKYFWGS 256 (465)
Q Consensus 204 G~~~~vL~~L~~~~~a~~V~~n~e~~p----~e----~~rd~~v~~~l~~~g--I~v~~~~~~ 256 (465)
-...+.|.++|+.+|.+-+..|.|... .. ...-+.+.+.+.+.+ ..+..|++-
T Consensus 147 ~~~a~kLv~la~~yGFDGw~IN~E~~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~ 209 (653)
T 2w91_A 147 FPIARKLVDMAKYYGYDGYFINQETTGDLVKPLGEKMRQFMLYSKEYAAKVNHPIKYSWYDAM 209 (653)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEEEECSTTTGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCB
T ss_pred HHHHHHHHHHHHHhCCCceEEeecccCCCCHHHHHHHHHHHHHHHHHHhccCCCcEEEEeecc
Confidence 124588999999999999999999632 11 233445555555443 456666553
No 130
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=20.33 E-value=66 Score=34.45 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=34.4
Q ss_pred HHHHHHHhCCCcEEEEeCChHHHHHHHHHHhCCCEEEEecc
Q 012338 187 DLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHRE 227 (465)
Q Consensus 187 dL~~~L~~~Gi~L~v~~G~~~~vL~~L~~~~~a~~V~~n~e 227 (465)
+.-+.|++.|+++.+..|+.......++++.|++.++++..
T Consensus 464 ~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~~~~~~~ 504 (645)
T 3j08_A 464 PAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVL 504 (645)
T ss_dssp HHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCC
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCEEEEeCC
Confidence 33345677899999999999999999999999999887643
No 131
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=20.27 E-value=1.9e+02 Score=23.32 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEe
Q 012338 208 TVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYF 253 (465)
Q Consensus 208 ~vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~ 253 (465)
+.+.+++++++++.|+..-..... ..-+++.+.|.+.|+.+..+
T Consensus 55 ~~l~~~~~~~~id~viia~~~~~~--~~~~~i~~~l~~~gv~v~~v 98 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPSASQ--VQKKVIIESLAKLHVEVLTI 98 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTTSCH--HHHHHHHHHHHTTTCEEEEC
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCH--HHHHHHHHHHHHcCCeEEEC
Confidence 458889999999999886543222 23356777888899998753
No 132
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=20.27 E-value=2.3e+02 Score=25.89 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEeC---------ChH---------HHHHHHHHHhCCCEEEEeccCC-------hhHH----
Q 012338 183 ESVSDLRKNLQARGSDLVVRVG---------KPE---------TVLVELAKAIGADAVYAHREVS-------HDEV---- 233 (465)
Q Consensus 183 esL~dL~~~L~~~Gi~L~v~~G---------~~~---------~vL~~L~~~~~a~~V~~n~e~~-------p~e~---- 233 (465)
+.+.++++.|++.|+.+..+.. ++. ....+++++.|+..|+++-.+. ..+.
T Consensus 64 ~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~ 143 (287)
T 3kws_A 64 GRVNEIKQALNGRNIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDF 143 (287)
T ss_dssp GGHHHHHHHHTTSSCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHH
Confidence 3478899999999999865431 221 2344577889999998764321 1111
Q ss_pred --HHHHHHHHHHHhcCCeEE
Q 012338 234 --KSEEKIEAAMKDEGIEVK 251 (465)
Q Consensus 234 --~rd~~v~~~l~~~gI~v~ 251 (465)
+.-+.+.+.+++.||.+-
T Consensus 144 ~~~~l~~l~~~a~~~Gv~l~ 163 (287)
T 3kws_A 144 LCEQFNEMGTFAAQHGTSVI 163 (287)
T ss_dssp HHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHcCCEEE
Confidence 122344445567898764
No 133
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=20.19 E-value=4.8e+02 Score=23.48 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEeC--ChH---H---HHHHHHHHhCCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEE
Q 012338 180 FLIESVSDLRKNLQARGSDLVVRVG--KPE---T---VLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVK 251 (465)
Q Consensus 180 FllesL~dL~~~L~~~Gi~L~v~~G--~~~---~---vL~~L~~~~~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~ 251 (465)
|..+-+..+++.+++.|..+.+... ++. + .+..+ ...+++.|+..-... . +..+ +.+.+.||++.
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~-~----~~~~-~~l~~~~iPvV 94 (290)
T 2rgy_A 22 YYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFL-IGRDCDGVVVISHDL-H----DEDL-DELHRMHPKMV 94 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHH-HHTTCSEEEECCSSS-C----HHHH-HHHHHHCSSEE
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHH-HhcCccEEEEecCCC-C----HHHH-HHHhhcCCCEE
Confidence 6666777888889999999988753 222 2 33333 456899888753221 1 1122 23455799998
Q ss_pred EeeC
Q 012338 252 YFWG 255 (465)
Q Consensus 252 ~~~~ 255 (465)
.++.
T Consensus 95 ~~~~ 98 (290)
T 2rgy_A 95 FLNR 98 (290)
T ss_dssp EESS
T ss_pred EEcc
Confidence 8754
No 134
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=20.07 E-value=2e+02 Score=26.86 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCcEEEEe-CChHHHHHHHHHHh--CCCEEEEeccCChhHHHHHHHHHHHHHhcCCeEEEee
Q 012338 184 SVSDLRKNLQARGSDLVVRV-GKPETVLVELAKAI--GADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW 254 (465)
Q Consensus 184 sL~dL~~~L~~~Gi~L~v~~-G~~~~vL~~L~~~~--~a~~V~~n~e~~p~e~~rd~~v~~~l~~~gI~v~~~~ 254 (465)
++.-|+..+++.|.+++|-. |....+|..++.+. ++..|+++..+.+.+. .+.+++.+++.|++++.+.
T Consensus 42 a~~~l~~a~~~~g~~i~Va~SGkDS~vLL~Ll~~~~~~i~vv~iDtg~~~~et--~~~v~~~~~~~gi~l~v~~ 113 (275)
T 2goy_A 42 PQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPET--YRFIDQVREHYGIAIDVLS 113 (275)
T ss_dssp HHHHHHHHHHHHSTTEEEECCSSTTHHHHHHHHHHCTTCCEEEECCSCCCHHH--HHHHHHHHHHHTCCCEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEeecHHHHHHHHHHHHhCCCceEEEEeCCCCCHHH--HHHHHHHHHHHCCeEEEEe
Confidence 34455555555565665533 76667888888876 4677888877765543 3456666777799887653
Done!