BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012339
         (465 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
           Antarctica
 pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
           Antarctica
          Length = 282

 Score = 37.4 bits (85), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 87/241 (36%), Gaps = 50/241 (20%)

Query: 235 DVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEK 294
           ++ G G+  ++L HGFG     WR  +  L +Q   TV  FD  G G  S L     +  
Sbjct: 22  NITGGGEKTVLLAHGFGCDQNXWRFXLPELEKQF--TVIVFDYVGSG-QSDLESFSTKRY 78

Query: 295 GSINPYKLETQVAIRGVVLLNASFSREVVPGFARILMRTALGKK---------------- 338
            S+  Y  + +  +  + L+N S     V      +  T +G +                
Sbjct: 79  SSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDRISDITXICPSPCFXNF 138

Query: 339 --HLVRPLLRTEITQVVNRR-----AWYDATKLTTEVLSLYKAPLCVEGWDEALHEIGRL 391
               V    R ++ +++N        W +           Y APL V G   +   IG L
Sbjct: 139 PPDYVGGFERDDLEELINLXDKNYIGWAN-----------YLAPL-VXGASHSSELIGEL 186

Query: 392 SHE-TILPPQCEAALLKA---------VEDL--PVLVIAGAEDALVSLKSSQVMASKLVN 439
           S       P       KA         +ED+  P L+   A+D+L S +  Q  A  + N
Sbjct: 187 SGSFCTTDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYXAENIPN 246

Query: 440 S 440
           S
Sbjct: 247 S 247


>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
           The H177y Mutation
 pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
           The H177y Mutation
 pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
           The H177y Mutation
 pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
           The H177y Mutation
          Length = 301

 Score = 35.4 bits (80), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 210 SEDIPILNLDDTVPDIEMDSGALEQDVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIG 269
           +E+ P+ N  ++    E+D   L     G G   ++LVHGFG   + W  +M  LA++  
Sbjct: 1   AEEFPVPNGFESAYR-EVDGVKLHYVKGGQGPL-VMLVHGFGQTWYEWHQLMPELAKRF- 57

Query: 270 CTVAAFDRPGWGLTSRLRQKDWEEKGSINPYKLETQVA 307
            TV A D PG G +   +     E+ ++  +KL  Q +
Sbjct: 58  -TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94


>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
           The H269a Mutation
 pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
           The H269a Mutation
 pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
           The H269a Mutation
 pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
           The H269a Mutation
          Length = 301

 Score = 35.4 bits (80), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 210 SEDIPILNLDDTVPDIEMDSGALEQDVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIG 269
           +E+ P+ N  ++    E+D   L     G G   ++LVHGFG   + W  +M  LA++  
Sbjct: 1   AEEFPVPNGFESAYR-EVDGVKLHYVKGGQGPL-VMLVHGFGQTWYEWHQLMPELAKRF- 57

Query: 270 CTVAAFDRPGWGLTSRLRQKDWEEKGSINPYKLETQVA 307
            TV A D PG G +   +     E+ ++  +KL  Q +
Sbjct: 58  -TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94


>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
 pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
 pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
 pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
          Length = 301

 Score = 35.4 bits (80), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 210 SEDIPILNLDDTVPDIEMDSGALEQDVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIG 269
           +E+ P+ N  ++    E+D   L     G G   ++LVHGFG   + W  +M  LA++  
Sbjct: 1   AEEFPVPNGFESAYR-EVDGVKLHYVKGGQGPL-VMLVHGFGQTWYEWHQLMPELAKRF- 57

Query: 270 CTVAAFDRPGWGLTSRLRQKDWEEKGSINPYKLETQVA 307
            TV A D PG G +   +     E+ ++  +KL  Q +
Sbjct: 58  -TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94


>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
           Hydrolase B Complexed With An Inhibitor
          Length = 362

 Score = 34.7 bits (78), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLR 287
           ++L+HGF    +SWRH +  LA   G  V A D+ G+G +S+ R
Sbjct: 36  VVLLHGFPESWYSWRHQIPALA-GAGYRVVAIDQRGYGRSSKYR 78


>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
           Mycobacterium Tuberculosis At 2.1 Angstrom
          Length = 356

 Score = 34.7 bits (78), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLR 287
           ++L+HGF    +SWRH +  LA   G  V A D+ G+G +S+ R
Sbjct: 30  VVLLHGFPESWYSWRHQIPALA-GAGYRVVAIDQRGYGRSSKYR 72


>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
 pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
 pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Cpu Inhibitor
 pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Cpu Inhibitor
 pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Ciu Inhibitor
 pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Ciu Inhibitor
 pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Cdu Inhibitor
 pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Cdu Inhibitor
          Length = 554

 Score = 33.1 bits (74), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
            + L HGF    FSWR+ +  LA Q G  V A D  G+G +S
Sbjct: 258 ALCLCHGFPESWFSWRYQIPALA-QAGFRVLAIDMKGYGDSS 298


>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
 pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
           Iodophenyl)urea Complex
 pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
           Ethanoic Acid Complex
 pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
           Butyric Acid Complex
 pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
           Hexanoic Acid Complex
 pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
           Heptanoic Acid Complex
 pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
 pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
 pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
 pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
           Antagonist
 pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
           Complexed With N-
           Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
          Length = 555

 Score = 33.1 bits (74), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
            + L HGF    +SWR+ +  LA Q G  V A D  G+G +S
Sbjct: 260 AVCLCHGFPESWYSWRYQIPALA-QAGYRVLAMDMKGYGESS 300


>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
           Synthetic Inhibitor
 pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
           Synthetic Inhibitor
 pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
           Synthetic Inhibitor
 pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
           Synthetic Inhibitor
          Length = 336

 Score = 32.7 bits (73), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
            + L HGF    +SWR+ +  LA Q G  V A D  G+G +S
Sbjct: 41  AVCLCHGFPESWYSWRYQIPALA-QAGYRVLAMDMKGYGESS 81


>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
           Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
 pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
           Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
          Length = 344

 Score = 32.3 bits (72), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
            + L HGF    +SWR+ +  LA Q G  V A D  G+G +S
Sbjct: 56  AVCLCHGFPESWYSWRYQIPALA-QAGYRVLAMDMKGYGESS 96


>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
           Mycobacterium Tuberculosis
 pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
           Mycobacterium Tuberculosis
 pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
           Mycobacterium Tuberculosis In Complex With Hopoda
 pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
           Mycobacterium Tuberculosis In Complex With Hopoda
 pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
           Mycobacterium Tuberculosis In Complex With 4,9dsha
 pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
           Mycobacterium Tuberculosis In Complex With 4,9dsha
 pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
           Mycobacterium Tuberculosis In Complex With Hopda
 pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
           Mycobacterium Tuberculosis In Complex With Hopda
          Length = 291

 Score = 31.6 bits (70), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 238 GNGQFGIILVHGFGGGVFSWRHV---MGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEK 294
           GN Q  ++L+HG G G  SW +    + VLAR     V A D+PG+G + +       E 
Sbjct: 34  GNDQT-VVLLHGGGPGAASWTNFSRNIAVLARHF--HVLAVDQPGYGHSDKR-----AEH 85

Query: 295 GSINPYKLETQVAIRGV 311
           G  N Y     +A++G+
Sbjct: 86  GQFNRY---AAMALKGL 99


>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
           Tuberculosis
 pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
           Tuberculosis
          Length = 311

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 238 GNGQFGIILVHGFGGGVFSWRHV---MGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEK 294
           GN Q  ++L+HG G G  SW +    + VLAR     V A D+PG+G + +       E 
Sbjct: 54  GNDQT-VVLLHGGGPGAASWTNFSRNIAVLARHF--HVLAVDQPGYGHSDKR-----AEH 105

Query: 295 GSINPYKLETQVAIRGV 311
           G  N Y     +A++G+
Sbjct: 106 GQFNRY---AAMALKGL 119


>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
           Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
           Cyanogenic Enzyme
 pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
           Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
           Cyanogenic Enzyme
          Length = 270

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 371 LYKAPLCVEGWDEALHEIGRLSHETILPPQCE 402
           ++  P C E W++AL E G ++  TI  P C+
Sbjct: 228 MHPTPECTEVWNKALAEQGNINPYTIYTPTCD 259


>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
           I (Steh1)
 pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
           I (Steh1)
          Length = 328

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
           I+ +HGF    +SWRH M  LA + G    A D  G+G T+
Sbjct: 34  ILFIHGFPELWYSWRHQMVYLAER-GYRAVAPDLRGYGDTT 73


>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
           Solanum Tuberosum
 pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
           Solanum Tuberosum
          Length = 328

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
           I+ +HGF    +SWRH M  LA + G    A D  G+G T+
Sbjct: 34  ILFIHGFPELWYSWRHQMVYLAER-GYRAVAPDLRGYGDTT 73


>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio Cholerae,
           Pfam Abhydrolase
          Length = 264

 Score = 29.3 bits (64), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWG 281
           ++LVHG  G    W+ V+  LAR   C     D PG G
Sbjct: 19  VVLVHGLLGSGADWQPVLSHLAR-TQCAALTLDLPGHG 55


>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
 pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
 pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
           In Arabidopsis Thaliana
          Length = 288

 Score = 29.3 bits (64), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 236 VEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEKG 295
           V G+G+  I+L HGFG     W+H++  L       V  +D  G G T+     D++   
Sbjct: 30  VIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDY--RVVLYDNMGAG-TTNPDYFDFDRYS 86

Query: 296 SINPYKLE 303
           ++  Y  +
Sbjct: 87  NLEGYSFD 94


>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
           Arabidopsis Thaliana
          Length = 270

 Score = 29.3 bits (64), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 236 VEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEKG 295
           V G+G+  I+L HGFG     W+H++  L       V  +D  G G T+     D++   
Sbjct: 12  VIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDY--RVVLYDNMGAG-TTNPDYFDFDRYS 68

Query: 296 SINPYKLE 303
           ++  Y  +
Sbjct: 69  NLEGYSFD 76


>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
           (atd14l)
          Length = 272

 Score = 29.3 bits (64), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 236 VEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEKG 295
           V G+G+  I+L HGFG     W+H++  L       V  +D  G G T+     D++   
Sbjct: 14  VIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDY--RVVLYDNMGAG-TTNPDYFDFDRYS 70

Query: 296 SINPYKLE 303
           ++  Y  +
Sbjct: 71  NLEGYSFD 78


>pdb|1KUV|A Chain A, X-Ray Crystallographic Studies Of Serotonin
           N-Acetyltransferase Catalysis And Inhibition
 pdb|1KUX|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
           Acetyltransferase Catalysis And Inhibition
 pdb|1KUY|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
           Acetyltransferase Catalysis And Inhibition
          Length = 207

 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 128 VHYKLCLPGSPPRSLSSTTFLEPKSTCNTPQTAVGRLKLDRQAFSALS 175
           +H    +PGSP R     T    +  C TP+ A G  +++R+AF ++S
Sbjct: 14  LHLPSGIPGSPGRQ-RRHTLPANEFRCLTPEDAAGVFEIEREAFISVS 60


>pdb|1L0C|A Chain A, Investigation Of The Roles Of Catalytic Residues In
           Serotonin N- Acetyltransferase
          Length = 207

 Score = 28.5 bits (62), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 128 VHYKLCLPGSPPRSLSSTTFLEPKSTCNTPQTAVGRLKLDRQAFSALS 175
           +H    +PGSP R     T    +  C TP+ A G  +++R+AF ++S
Sbjct: 14  LHLPSGIPGSPGRQ-RRHTLPANEFRCLTPEDAAGVFEIEREAFISVS 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,834,323
Number of Sequences: 62578
Number of extensions: 511865
Number of successful extensions: 1111
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 30
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)