Query 012340
Match_columns 465
No_of_seqs 95 out of 115
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 01:36:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03109 ETHYLENE-INSENSITIVE3 100.0 3E-149 6E-154 1137.7 25.0 302 33-337 24-333 (599)
2 PF04873 EIN3: Ethylene insens 100.0 4E-118 9E-123 877.1 -0.2 346 49-427 1-354 (354)
3 PF11001 DUF2841: Protein of u 97.1 0.00085 1.8E-08 59.9 5.7 82 177-274 16-103 (126)
4 PF00843 Arena_nucleocap: Aren 44.2 13 0.00029 40.4 1.8 158 97-290 269-485 (533)
5 KOG4215 Hepatocyte nuclear fac 41.5 5.5 0.00012 42.3 -1.4 23 411-433 40-62 (432)
6 KOG3263 Nucleic acid binding p 38.4 19 0.0004 35.1 1.6 22 102-130 145-166 (196)
7 PHA02767 hypothetical protein; 37.6 26 0.00056 30.9 2.3 26 82-107 43-68 (101)
8 PF11628 TCR_zetazeta: T-cell 27.8 13 0.00028 27.5 -1.0 6 115-120 13-18 (33)
9 PF07440 Caerin_1: Caerin 1 pr 24.4 35 0.00076 23.7 0.7 15 249-263 3-17 (24)
10 PF13494 DUF4119: Domain of un 22.2 47 0.001 29.5 1.2 15 42-56 26-40 (96)
11 COG2091 Sfp Phosphopantetheiny 22.0 86 0.0019 30.6 3.1 36 90-128 41-78 (223)
12 PF11831 Myb_Cef: pre-mRNA spl 20.8 3.3E+02 0.0072 26.5 6.7 21 90-110 154-174 (231)
No 1
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional
Probab=100.00 E-value=2.7e-149 Score=1137.71 Aligned_cols=302 Identities=63% Similarity=1.106 Sum_probs=282.6
Q ss_pred CCcCCCCcCccccCCHHHHHHhhhhhhHHHHHHHhhhcCCccc--hhhhccccHHHHHHhHhhhhhhhHHHHHHHHHHHH
Q 012340 33 PEATVEDDYTDEEMDVDELERRMWKDKMRLKRLKEQSRGKEGI--DMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVC 110 (465)
Q Consensus 33 ~~~~~e~~~sdeei~~eeLerRmWkDr~~LkrlKe~~~~~~~~--~~~k~~~~~eqarRKkMsRAQDgILKyMlKmMEvC 110 (465)
.++++|+|+||||||+||||||||||||+||||||+++..+.. +..|+++++||||||||+|||||||||||||||||
T Consensus 24 c~~~~~~~~sdeei~~~el~rrmwkd~~~l~rlke~~~~~~~~~~e~~~~~~~~~~arrkkm~raqdgilkymlk~me~c 103 (599)
T PLN03109 24 CDNLTENDVSDEEIEAEDLERRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRKKMSRAQDGILKYMLKLMEVC 103 (599)
T ss_pred cCCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999875444 36788999999999999999999999999999999
Q ss_pred hhccceeeeccCCCccccCCChhhHHHhhhhccccccchhhhhhhcccCCCCCCCCCCCCCCCCcchhhhcchhhhhhHH
Q 012340 111 KAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQELQDTTLGSLL 190 (465)
Q Consensus 111 ~AqGFVYGIIpekGKPvsGaSdnlR~WWKekVrFDrngPaAiaky~~~~~~~~~~~~~~~~~~~~h~L~eLqDtTLGSLL 190 (465)
|||||||||||||||||||||||||+||||||+||||||+||+||+++|.+.+.++.... +++|+|||||||||||||
T Consensus 104 ~a~gfvygiipekgkpvsg~sd~lr~wwk~~v~fd~~gp~ai~ky~~~~~~~~~~~~~~~--~~~~~l~~lqd~tLgsll 181 (599)
T PLN03109 104 KARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMGEAESSGN--NSQHSLQDLQDATLGSLL 181 (599)
T ss_pred hhcceeEEeccCCCCCCCCCchHHHHHHHHhcccccccHHHHHHhhhhcccccccccCCc--ccHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887765443 899999999999999999
Q ss_pred HHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhccCcCHHHHHHHH
Q 012340 191 SALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLV 270 (465)
Q Consensus 191 SaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~gl~~~~gpPPYKKPHdLKKaWKV~VLtAVIKHmsPD~~kIr~lV 270 (465)
|||||||+|||||||||||+||||||||+|+||+++|+|++++ |||||||||||||||||||||||||||||+|||+||
T Consensus 182 salmqhC~Ppqr~~plekg~~PPWWPtg~E~WW~~~g~~~~~~-pPykkphdLkK~wKv~vl~avikhmsPd~~kir~~v 260 (599)
T PLN03109 182 SSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLPKGQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDFDKIRRHV 260 (599)
T ss_pred HHHHhhcCChhhcCCCCCCCCCCCCCCCCcchhhhcCCCCCCC-CCCCCchhhhhHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhCCCCCc------cccCCCCCCCccccCCCCccccCCCCCCC
Q 012340 271 RQSKCLQDKMTAKESATWLAIINQEEALARELYPESCT------VLSSSAGSGSLVINDCNEYDVEGAEDEPN 337 (465)
Q Consensus 271 rqSkclqdKmTakEs~tW~~vl~qEeal~r~l~~~~~~------p~~~~~~~~~~~~~~~~eydV~g~~~~~~ 337 (465)
|||||||||||||||+||++||+|||+|++++..++.+ |.++.++.....+|+++||||||+||...
T Consensus 261 r~Sk~lqdkmtakEs~~W~~vl~~Ee~~~~~~s~DNGtS~ITe~P~g~~~~rk~~~~SSdsdYDVDg~eD~~g 333 (599)
T PLN03109 261 RQSKCLQDKMTAKESLIWLGVLNREESLIRQPSSDNGTSGITETPRGGHEDRNKDAISSDSDYDVDGLEDAPG 333 (599)
T ss_pred HhchhHHhhhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCCCccccCCCCCcCCCcccccccccCCCC
Confidence 99999999999999999999999999999998777643 44556677777899999999999998753
No 2
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=100.00 E-value=4.2e-118 Score=877.12 Aligned_cols=346 Identities=45% Similarity=0.780 Sum_probs=95.9
Q ss_pred HHHHHhhhhhhHHHHHHHhhhcC----Ccc-chhhhccccHHHHHHhHhhhhhhhHHHHHHHHHHHHhhccceeeeccCC
Q 012340 49 DELERRMWKDKMRLKRLKEQSRG----KEG-IDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEK 123 (465)
Q Consensus 49 eeLerRmWkDr~~LkrlKe~~~~----~~~-~~~~k~~~~~eqarRKkMsRAQDgILKyMlKmMEvC~AqGFVYGIIpek 123 (465)
|||++|||||+|+|+||++++.. ++. ....|..+..||+|||+|+||||||||||+||||||||+||||||||++
T Consensus 1 EElkk~~~~dq~~~r~~~~r~~~~~~~~e~a~~~~k~~~~~eq~~kr~~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~ 80 (354)
T PF04873_consen 1 EELKKRMWKDQMPVRRLHSRKLQLMEDQEPATGAKKSNKPNEQIRKRKMSRAQDGILKYMFPEMELCNAPGFVYTIISSS 80 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhhhccChhhcchHHHHhhcccccccccccccccccCCcHHHHHhhhhhhhhhHHHHhhccccccccCceeeecCCCCC
Confidence 79999999999999999998755 222 2334567889999999999999999999999999999999999999999
Q ss_pred CccccCCChhhHHHhhhhccccccchhhhhhhcccCCCCCCCCCCCC-CCCCcchhhhcchhhhhhHHHHhhhcCCCCcc
Q 012340 124 GKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINA-IGPTPHTLQELQDTTLGSLLSALMQHCDPPQR 202 (465)
Q Consensus 124 GKPvsGaSdnlR~WWKekVrFDrngPaAiaky~~~~~~~~~~~~~~~-~~~~~h~L~eLqDtTLGSLLSaLmqhC~PPQR 202 (465)
||||+|+|||||+||||+|+||+|||+||+||++++.+.+...++.. .....|+|++|||||||||||||||||+||||
T Consensus 81 ~k~~~~~s~slr~wwke~v~~~~ng~~~vs~~~~~~l~ls~~~~lq~~rs~~~~sl~~vpDTd~gSLL~a~~q~~~~p~~ 160 (354)
T PF04873_consen 81 GKPVEGVSPSLRAWWKEEVEFDRNGPIQVSKYDPKDLVLSGERGLQTERSSESTSLSLVPDTDLGSLLSALMQHCTPPQR 160 (354)
T ss_dssp -------------------------------------------------------STTS-HHHHHHHHHHHSSSSSS-TT
T ss_pred CCccCCcCCcccchhhhhhhcCcccccccCCcchhhhcccCCCCcccccccccccccccCCcccccccccccccCCCCcc
Confidence 99999999999999999999999999999999999999877766543 56899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhccCcCHHHHHHHHhhhhhhhhhhhH
Q 012340 203 RFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTA 282 (465)
Q Consensus 203 rfPLekG~~PPWWPtG~E~WW~~~gl~~~~gpPPYKKPHdLKKaWKV~VLtAVIKHmsPD~~kIr~lVrqSkclqdKmTa 282 (465)
+|||++|++|||||||+|.||+++|+++++||||||+||||||||||+||+||||||+|+|.+||++|++|+|||+|||+
T Consensus 161 ~~~~~~~~~~Pwwp~gkE~~~~~~g~s~~~~~~~~k~p~~lkk~~k~~~L~~~ikH~~~~~~~me~seldtq~LQnK~Sk 240 (354)
T PF04873_consen 161 CFPLEKGIEPPWWPTGKELWWGELGCSKDTGPPPYKKPHDLKKAWKVSVLRAEIKHMSPTFDEMEESELDTQYLQNKMSK 240 (354)
T ss_dssp S--TTT--HHHH---S--HHHHHHT--TT--------GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--S
T ss_pred CcccccccCCCCCCCCccccccccCCcCCCCCCCccChHHhhhcccccchhhhhccCCcchHHHHHhhhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCCCccccCCCCccccCCCCCCCccccccCCCCcccccchhhhhhcCC
Q 012340 283 KESATWLAIINQEEALARELYPESCTVLSSSAGSGSLVINDCNEYDVEGAEDEPNFDVQECKPQNLISSSLGMERMRERL 362 (465)
Q Consensus 283 kEs~tW~~vl~qEeal~r~l~~~~~~p~~~~~~~~~~~~~~~~eydV~g~~~~~~~~v~~~kp~~~~~~n~~~~~~~~~~ 362 (465)
+||.||+++++|||++++.++++ +.+...++..+.++...+|||+|.++.....++....
T Consensus 241 rqSfa~~s~~~qEEk~~~~v~a~---s~S~~kqsp~vt~e~~qeee~qG~~Es~i~~vq~~~~----------------- 300 (354)
T PF04873_consen 241 RQSFAWFSNPGQEEKECRTVCAH---SRSLRKQSPKVTLECEQEEEVQGKEESKIKHVQAVSA----------------- 300 (354)
T ss_dssp HHHHHHHHHHTTTTT-S---------------------------------------------------------------
T ss_pred hhhhhhhcccCchhhhccccCCC---cchhhccCCCccccccchhhccCcccccccccccccc-----------------
Confidence 99999999999999999999888 2344556666777788899999988866544433221
Q ss_pred CCCCCCCCcccccccccccccccCCCCCCCcccC--ccccccCCCCCCCCCCCCCCCCcccCCCccc
Q 012340 363 PNQQPPYAIKGEVVSNFDFVRKRKPSNDLSMKMD--QHIYTCEYLQCPYSDPRLGYRDRTSRDNHQL 427 (465)
Q Consensus 363 ~~~~~~~~~K~e~~~~~~f~~KRk~~~~~~~~~~--~~~ytCe~~qCP~s~~~~GF~DrnsR~nHq~ 427 (465)
..+..++.||+...+...... ...|+|+++|||+|+..+||.|+|.|++|+|
T Consensus 301 -------------~~~~~~v~Qrkrkpgd~a~~s~~~~srlCqssq~~gsE~eli~~Dkn~isqn~y 354 (354)
T PF04873_consen 301 -------------TNGFPVVCQRKRKPGDYAKCSIKGVSRLCQSSQCPGSETELIFADKNGISQNPY 354 (354)
T ss_dssp -------------------------------------------------------------------
T ss_pred -------------ccCCccccccCCCCCccccccccccccCCccccCCCcccccCcCCccccccCCC
Confidence 125667778874344333443 3489999999999999999999999999997
No 3
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=97.14 E-value=0.00085 Score=59.95 Aligned_cols=82 Identities=24% Similarity=0.634 Sum_probs=65.1
Q ss_pred hhhhcchhhhhhHHHHhhhcCCC-CccCCCCCCC--CCCCCCCCCCCccccccCCCCCCCCCCCCCCcchhhhhhhhhhh
Q 012340 177 TLQELQDTTLGSLLSALMQHCDP-PQRRFPLEKG--VSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLT 253 (465)
Q Consensus 177 ~L~eLqDtTLGSLLSaLmqhC~P-PQRrfPLekG--~~PPWWPtG~E~WW~~~gl~~~~gpPPYKKPHdLKKaWKV~VLt 253 (465)
.+..||-+.--.+..|-..-=.| -|.+||-.+| ..|+|||.+ .+++-|.-|+|.-.|.+|+
T Consensus 16 ~F~~lqQ~~Ck~IAKawIK~IEPkKQ~~~PY~~g~~tkP~WWP~~----------------V~HkEPDHL~K~eRi~LLi 79 (126)
T PF11001_consen 16 AFKALQQVNCKQIAKAWIKVIEPKKQAKYPYNGGDKTKPPWWPED----------------VRHKEPDHLKKPERIRLLI 79 (126)
T ss_pred HHHHcChhHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC----------------CCcCCCCccCHHHHHHHHH
Confidence 35567777766666676666555 5899999999 599999944 7899999999999999999
Q ss_pred hhhhccCc---CHHHHHHHHhhhh
Q 012340 254 AVIKHMSP---DIAKIRKLVRQSK 274 (465)
Q Consensus 254 AVIKHmsP---D~~kIr~lVrqSk 274 (465)
.+++.+.+ ..++++.+...+.
T Consensus 80 hIlr~l~~~~~t~~kL~~a~~~~~ 103 (126)
T PF11001_consen 80 HILRNLRPHGITVDKLEEATQDVR 103 (126)
T ss_pred HHHHhccccCCcHHHHHHHHHHHH
Confidence 99999877 6677777666554
No 4
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=44.17 E-value=13 Score=40.38 Aligned_cols=158 Identities=27% Similarity=0.434 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHHhhccceeeeccC----------------CCccccCCChhh--HHHhhhhccccccchhhhhhhccc
Q 012340 97 DGILKYMLKMMEVCKAQGFVYGIIPE----------------KGKPVTGASDNL--REWWKDKVRFDRNGPAAIAKYQAD 158 (465)
Q Consensus 97 DgILKyMlKmMEvC~AqGFVYGIIpe----------------kGKPvsGaSdnl--R~WWKekVrFDrngPaAiaky~~~ 158 (465)
+.|||-+|+ |=+.-|..-+..|- .|=|-.||--.| |+|=---|-|+...+..-
T Consensus 269 ~~iiK~~L~---vK~~e~MFv~~~pG~RNPYENlLYKlCLSGeGWPYI~SRSqI~GRAWDNT~VDl~~~p~~~~------ 339 (533)
T PF00843_consen 269 STIIKAVLK---VKRREGMFVSETPGQRNPYENLLYKLCLSGEGWPYIGSRSQIKGRAWDNTTVDLTGKPDSGP------ 339 (533)
T ss_dssp HHHHHHHHH---HHHHHT----SSSSS--HHHHHHHHHHH-SSB-TTTSBGTT--S-HHHHEEEE---------------
T ss_pred HHHHHHHHH---HHHhcCcccCCCCCCCCcHHHHHHHHhcCCCCCCceeecccccccccCCcEEeCCCCCCCCC------
Confidence 457776664 44555555455553 566777776665 889888899988765211
Q ss_pred CCCCCCCCCCCCCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCC----
Q 012340 159 NSVPGKNEGINAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGA---- 234 (465)
Q Consensus 159 ~~~~~~~~~~~~~~~~~h~L~eLqDtTLGSLLSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~gl~~~~gp---- 234 (465)
..+..+ ..++.+..|.+.|-.. |...|+.=||-- ..|=.=.|-|.+++-
T Consensus 340 -~~p~~n----g~~~~l~~Lt~~qe~~----lk~am~~Ldp~~------------------ttWiDIEG~p~DPVElAiy 392 (533)
T PF00843_consen 340 -PPPVRN----GGNPRLSGLTESQEMQ----LKDAMEKLDPNA------------------TTWIDIEGPPNDPVELAIY 392 (533)
T ss_dssp -----------------SSS-HHHHHH----HHHHHCCS-TTS-------------------EEEEEESETTSESEEEEE
T ss_pred -CCccCC----CCCCCCCCCCHHHHHH----HHHHHHhCCCCC------------------CeeEecCCCCCCCeEEEEe
Confidence 112222 2223334455555444 444555555532 234444455554421
Q ss_pred --------CCCCCCcchhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHhh-----hhhhh
Q 012340 235 --------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------AKIRKLVRQ-----SKCLQ 277 (465)
Q Consensus 235 --------PPYKKPHdLKKaW-----------------KV~VLtAVIKHmsPD~-------~kIr~lVrq-----Skclq 277 (465)
-=||+|||.|-.= .-|+++|||+|+-++. +-||+|.-. =|-+-
T Consensus 393 QP~sg~YiHcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL~S~vi~~LP~~MVlT~QGsDDIrkLld~hGRrDiKlvD 472 (533)
T PF00843_consen 393 QPSSGNYIHCYREPHDEKQFKNQSKYSHGILLKDLENAQPGLTSAVIELLPKNMVLTCQGSDDIRKLLDMHGRRDIKLVD 472 (533)
T ss_dssp ETTTTEEEEEE---S-HHHHHHHHHHTT-B-GGGCTTB-TTHHHHHHHHS-TT-EEEESSHHHHHHHHHCTT-TTSEEEE
T ss_pred ccCCCcEEEEecCCcchhhhcccccccccccHHHHhhhccchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCCcceEEE
Confidence 1399999987431 2479999999999886 889998743 34445
Q ss_pred hhhhHHHHHHHHH
Q 012340 278 DKMTAKESATWLA 290 (465)
Q Consensus 278 dKmTakEs~tW~~ 290 (465)
=|||+.+|.....
T Consensus 473 V~lt~eqaR~FEd 485 (533)
T PF00843_consen 473 VKLTSEQARKFED 485 (533)
T ss_dssp ----HHHHTTTHH
T ss_pred eecCHHHHHHHHH
Confidence 5899998876543
No 5
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=41.55 E-value=5.5 Score=42.29 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=20.8
Q ss_pred CCCCCCCCcccCCCcccccCCCC
Q 012340 411 DPRLGYRDRTSRDNHQLTCPYKS 433 (465)
Q Consensus 411 ~~~~GF~DrnsR~nHq~~C~yr~ 433 (465)
+.+=||--|+.|.||||+|+|..
T Consensus 40 dGCKGFFRRSVrk~~~YtCRF~k 62 (432)
T KOG4215|consen 40 DGCKGFFRRSVRKNHQYTCRFNK 62 (432)
T ss_pred CcchHHHHHHHHhcceeeeeccc
Confidence 56789999999999999999983
No 6
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=38.40 E-value=19 Score=35.14 Aligned_cols=22 Identities=50% Similarity=0.806 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhccceeeeccCCCccccCC
Q 012340 102 YMLKMMEVCKAQGFVYGIIPEKGKPVTGA 130 (465)
Q Consensus 102 yMlKmMEvC~AqGFVYGIIpekGKPvsGa 130 (465)
-|+||| ||+ |+=--|||+|.|+
T Consensus 145 EMmk~M------Gf~-gFDtTkgkkv~g~ 166 (196)
T KOG3263|consen 145 EMMKIM------GFS-GFDTTKGKKVGGS 166 (196)
T ss_pred HHHHHh------CcC-cccCCCCccccCc
Confidence 488888 555 6778999999886
No 7
>PHA02767 hypothetical protein; Provisional
Probab=37.58 E-value=26 Score=30.93 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.1
Q ss_pred ccHHHHHHhHhhhhhhhHHHHHHHHH
Q 012340 82 QSQEQARRKKMSRAQDGILKYMLKMM 107 (465)
Q Consensus 82 ~~~eqarRKkMsRAQDgILKyMlKmM 107 (465)
|.+=-+|.|.|..|-|.||||.|+..
T Consensus 43 QIk~~~k~~~~EK~~~~I~kYl~~TF 68 (101)
T PHA02767 43 QIKINMKKKEYEKAGMSILKYLVHTF 68 (101)
T ss_pred EEEehhhHHHHHHHHHHHHHHHHHHc
Confidence 44556889999999999999999864
No 8
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=27.81 E-value=13 Score=27.49 Aligned_cols=6 Identities=83% Similarity=1.802 Sum_probs=4.5
Q ss_pred ceeeec
Q 012340 115 FVYGII 120 (465)
Q Consensus 115 FVYGII 120 (465)
|+||||
T Consensus 13 ~iYgii 18 (33)
T PF11628_consen 13 FIYGII 18 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 778876
No 9
>PF07440 Caerin_1: Caerin 1 protein; InterPro: IPR010000 This family consists of several caerin 1 proteins from Litoria species, Australian tree frogs. The caerin 1 peptides are among the most powerful of the broad-spectrum antibiotic amphibian peptides []. These peptides are excreted from amphibian skin, and can interact with and disrupt bacterial membranes, leading to the permeabilisation of the cell membrane. Caerin 1.1 forms a helix-bend-helix sturcture, where both helices are required for activity, as well as the bend region for flexibility.; GO: 0005576 extracellular region
Probab=24.41 E-value=35 Score=23.71 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=12.8
Q ss_pred hhhhhhhhhccCcCH
Q 012340 249 VGVLTAVIKHMSPDI 263 (465)
Q Consensus 249 V~VLtAVIKHmsPD~ 263 (465)
.+||-+|.||+.|..
T Consensus 3 ~~vlgsvakhvlphv 17 (24)
T PF07440_consen 3 FSVLGSVAKHVLPHV 17 (24)
T ss_pred HHHHHHHHHHhcccc
Confidence 579999999999865
No 10
>PF13494 DUF4119: Domain of unknown function, B. Theta Gene description (DUF4119)
Probab=22.16 E-value=47 Score=29.47 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=11.9
Q ss_pred ccccCCHHHHHHhhh
Q 012340 42 TDEEMDVDELERRMW 56 (465)
Q Consensus 42 sdeei~~eeLerRmW 56 (465)
.+|-|+.||||+||=
T Consensus 26 k~EIIs~eElekr~~ 40 (96)
T PF13494_consen 26 KGEIISEEELEKRIG 40 (96)
T ss_pred ccceecHHHHHhhcC
Confidence 345579999999984
No 11
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=21.99 E-value=86 Score=30.57 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=30.1
Q ss_pred hHhhhhhhhHHHHHHHHHHHHhhcc--ceeeeccCCCcccc
Q 012340 90 KKMSRAQDGILKYMLKMMEVCKAQG--FVYGIIPEKGKPVT 128 (465)
Q Consensus 90 KkMsRAQDgILKyMlKmMEvC~AqG--FVYGIIpekGKPvs 128 (465)
+.|-.|.+++|++.|+.|--|..+. |.|| +.|||.=
T Consensus 41 r~r~l~~~~~lr~lls~~l~~~~~~~~~~~~---~~GKP~~ 78 (223)
T COG2091 41 RERFLASRLLLRALLSIALGLDPELLQISYG---ERGKPYL 78 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccceeeEC---CCCCccc
Confidence 5788999999999999999998776 4554 7899963
No 12
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=20.84 E-value=3.3e+02 Score=26.54 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=17.1
Q ss_pred hHhhhhhhhHHHHHHHHHHHH
Q 012340 90 KKMSRAQDGILKYMLKMMEVC 110 (465)
Q Consensus 90 KkMsRAQDgILKyMlKmMEvC 110 (465)
.-..+|++=|.+-|+.||.-=
T Consensus 154 ~~~~~ae~lI~~Em~~Ll~~D 174 (231)
T PF11831_consen 154 TELDEAEELIKQEMATLLKHD 174 (231)
T ss_pred cchHHHHHHHHHHHHHHHHhH
Confidence 345689999999999999753
Done!