Query 012340
Match_columns 465
No_of_seqs 95 out of 115
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 07:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wij_A Ethylene-insensitive3-l 100.0 8.9E-83 3E-87 560.2 1.3 138 168-306 2-139 (140)
2 3q7c_A Nucleoprotein; deddh ex 54.3 4.8 0.00016 38.8 1.7 53 237-290 88-170 (243)
3 3mwp_A Nucleoprotein; structur 37.8 12 0.0004 39.5 1.7 160 97-290 284-504 (577)
4 3h3g_B Parathyroid hormone-rel 33.7 17 0.00059 24.3 1.4 14 47-60 3-16 (24)
5 2hac_A T-cell surface glycopro 25.8 9.4 0.00032 27.2 -1.0 6 115-120 13-18 (33)
6 1g5h_A Mitochondrial DNA polym 19.9 22 0.00077 35.6 0.0 40 103-143 24-78 (454)
7 2d42_A Non-toxic crystal prote 14.5 69 0.0023 31.0 1.9 14 106-119 13-26 (249)
8 1zei_A Insulin, B28Asp-X-MCR; 14.2 39 0.0013 25.6 0.1 13 106-118 15-27 (53)
9 3e8v_A Possible transglutamina 13.3 66 0.0023 26.4 1.2 13 119-131 7-19 (82)
10 1vd2_A Protein kinase C, IOTA 12.4 1.1E+02 0.0038 25.1 2.3 30 104-133 33-65 (89)
No 1
>1wij_A Ethylene-insensitive3-like 3 protein; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.140.5.1
Probab=100.00 E-value=8.9e-83 Score=560.19 Aligned_cols=138 Identities=72% Similarity=1.246 Sum_probs=126.4
Q ss_pred CCCCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcchhhhh
Q 012340 168 INAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAW 247 (465)
Q Consensus 168 ~~~~~~~~h~L~eLqDtTLGSLLSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~gl~~~~gpPPYKKPHdLKKaW 247 (465)
++++++++|+||||||||||||||||||||+|||||||||||+||||||||+|+||+++|++++|+ |||||||||||||
T Consensus 2 ~~~~~~~~h~L~~Lqd~TLgsllsaLmqhC~PPQR~~Plekg~~PPWWPtG~E~WW~~lGl~~~~~-PPYkkPhdLkKaw 80 (140)
T 1wij_A 2 SSGSSGSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQS-PPYRKPHDLKKMW 80 (140)
T ss_dssp ------CCCCSTTSCHHHHHHHHHHHSSSSSSCTTSCCTTTCCHHHHCCCSCCHHHHHHTCCTTCC-CCCCCGGGCCHHH
T ss_pred CccccccHHHHHHHHHHhHHHHHHHHHhhCCCchhcCCCCCCCCcCCCCCCCchhHHhcCCCCCCC-CCCCCchhhhHHH
Confidence 566789999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred hhhhhhhhhhccCcCHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhCCCC
Q 012340 248 KVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPES 306 (465)
Q Consensus 248 KV~VLtAVIKHmsPD~~kIr~lVrqSkclqdKmTakEs~tW~~vl~qEeal~r~l~~~~ 306 (465)
||+|||||||||||||+|||+|||||||||||||||||+||++||||||+++++++|++
T Consensus 81 KV~VLtAVIKHmsPd~~kir~lVrqSk~lqdKmTakEs~~W~~vl~~Ee~~~~~~~p~~ 139 (140)
T 1wij_A 81 KVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQSGPSS 139 (140)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTTCCSHHHHHHHHHHTTTTTCSCC-----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999998874
No 2
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=54.26 E-value=4.8 Score=38.76 Aligned_cols=53 Identities=28% Similarity=0.511 Sum_probs=40.6
Q ss_pred CCCCcchhhhhh------------------hhhhhhhhhccCcCH-------HHHHHHHhh-----hhhhhhhhhHHHHH
Q 012340 237 YKKPHDLKKAWK------------------VGVLTAVIKHMSPDI-------AKIRKLVRQ-----SKCLQDKMTAKESA 286 (465)
Q Consensus 237 YKKPHdLKKaWK------------------V~VLtAVIKHmsPD~-------~kIr~lVrq-----SkclqdKmTakEs~ 286 (465)
||+|||.|-. | -|+++|||+|+-++. +-||+|.-. =|-+-=|||+.+|.
T Consensus 88 yR~P~D~K~F-K~~SKySHGillkDl~~aqPGL~S~vi~~LP~nMVlT~QGsDDIrkLld~hGRrDiKlIDV~lt~eqaR 166 (243)
T 3q7c_A 88 FREPTDLKQF-KQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKLIDIALSKTDSR 166 (243)
T ss_dssp ECCCSCHHHH-HHHHHHTTCBCGGGGTTBCTTHHHHHHHHSCTTCEEEESSHHHHHHHHHHTTCTTSEEEECCCCHHHHT
T ss_pred ecCCcchhhh-cccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCccceEEEeecCHHHHH
Confidence 9999998743 3 379999999999986 889999843 34445589999887
Q ss_pred HHHH
Q 012340 287 TWLA 290 (465)
Q Consensus 287 tW~~ 290 (465)
....
T Consensus 167 ~FEd 170 (243)
T 3q7c_A 167 KYEN 170 (243)
T ss_dssp TTHH
T ss_pred HHHH
Confidence 6543
No 3
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=37.85 E-value=12 Score=39.50 Aligned_cols=160 Identities=28% Similarity=0.416 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHhhccceeeecc----------------CCCccccCCChhh--HHHhhhhccccccchhhhhhhccc
Q 012340 97 DGILKYMLKMMEVCKAQGFVYGIIP----------------EKGKPVTGASDNL--REWWKDKVRFDRNGPAAIAKYQAD 158 (465)
Q Consensus 97 DgILKyMlKmMEvC~AqGFVYGIIp----------------ekGKPvsGaSdnl--R~WWKekVrFDrngPaAiaky~~~ 158 (465)
++|||-+|+ |=++-|..-.-.| -.|=|-.||--.| |+|=.--|-|+...+..-
T Consensus 284 ~~iiK~~L~---vK~~e~MFVs~~PG~RNPYENlLYKlCLSGeGWPYI~SRsqI~GRaWdNT~vdl~~~~~~~~------ 354 (577)
T 3mwp_A 284 DGILKSILK---VKKALGMFISDTPGERNPYENILYKICLSGDGWPYIASRTSITGRAWENTVVDLESDGKPQK------ 354 (577)
T ss_dssp HHHHHHHHH---HHHHHTCCCCSCCSSCCHHHHHHHHHHHCSSBCTTTSBCTTCCSCHHHHEEECC--------------
T ss_pred HHHHHHHHH---HHHhcCceecCCCCCCChHHHHHHHHhhCCCCCcceeeccccccccccCceEecCCCCCCCC------
Confidence 467777765 4455554444444 3567777776665 889888888887763221
Q ss_pred CCCCCCCCCC--CCCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCC--
Q 012340 159 NSVPGKNEGI--NAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGA-- 234 (465)
Q Consensus 159 ~~~~~~~~~~--~~~~~~~h~L~eLqDtTLGSLLSaLmqhC~PPQRrfPLekG~~PPWWPtG~E~WW~~~gl~~~~gp-- 234 (465)
.|..|++. ...++ ...|...|-. +|...|+.-||-- ..|=.-.|-|.+++-
T Consensus 355 --~p~rnG~~~~~~~~~-l~~L~~~qe~----~~k~~~~~ldp~~------------------ttWiDIEG~p~DPVE~A 409 (577)
T 3mwp_A 355 --ADSNNSSKSLQSAGF-TAGLTYSQLM----TLKDAMLQLDPNA------------------KTWMDIEGRPEDPVEIA 409 (577)
T ss_dssp --------------------CCCHHHHH----HHHHHGGGSCTTS------------------CEEEEEESCTTSCSEEE
T ss_pred --CCccCcccccccCCc-ccCCCHHHHH----HHHHHHHhCCCCC------------------CeEEecCCCCCCCeEEE
Confidence 23333211 11111 2334444433 4455666666632 244444566655431
Q ss_pred ----------CCCCCCcchhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHhh-----hhh
Q 012340 235 ----------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------AKIRKLVRQ-----SKC 275 (465)
Q Consensus 235 ----------PPYKKPHdLKKaW-----------------KV~VLtAVIKHmsPD~-------~kIr~lVrq-----Skc 275 (465)
-=|++|||.|-.= .-|+++|||+|+-++. +-||+|.-. -|-
T Consensus 410 iyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqPGL~S~vi~~LP~~mV~T~QGsdDI~kLld~hGR~DiK~ 489 (577)
T 3mwp_A 410 LYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKL 489 (577)
T ss_dssp EEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCTTHHHHHHHHSCTTCEEEESSHHHHHHHHHHTTCTTCEE
T ss_pred EeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCccceE
Confidence 1399999987431 2378999999999886 889998843 344
Q ss_pred hhhhhhHHHHHHHHH
Q 012340 276 LQDKMTAKESATWLA 290 (465)
Q Consensus 276 lqdKmTakEs~tW~~ 290 (465)
+-=|||+.+|.....
T Consensus 490 iDV~lt~eqaR~fEd 504 (577)
T 3mwp_A 490 IDIALSKTDSRKYEN 504 (577)
T ss_dssp EECCCCHHHHTTTHH
T ss_pred EEeecCHHHHHHHHH
Confidence 455899998876543
No 4
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=33.73 E-value=17 Score=24.34 Aligned_cols=14 Identities=21% Similarity=0.665 Sum_probs=10.7
Q ss_pred CHHHHHHhhhhhhH
Q 012340 47 DVDELERRMWKDKM 60 (465)
Q Consensus 47 ~~eeLerRmWkDr~ 60 (465)
.+.||+||||-..+
T Consensus 3 s~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 3 SIQDLRRRFFLHHL 16 (26)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 47899999996543
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=25.77 E-value=9.4 Score=27.20 Aligned_cols=6 Identities=67% Similarity=1.752 Sum_probs=4.5
Q ss_pred ceeeec
Q 012340 115 FVYGII 120 (465)
Q Consensus 115 FVYGII 120 (465)
|+||||
T Consensus 13 ~iYgii 18 (33)
T 2hac_A 13 FIYGVI 18 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 678876
No 6
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=19.92 E-value=22 Score=35.63 Aligned_cols=40 Identities=23% Similarity=0.637 Sum_probs=26.9
Q ss_pred HHHHHHHHhhccceee---eccCCCccccCCC-----------hhhHH-Hhhhhcc
Q 012340 103 MLKMMEVCKAQGFVYG---IIPEKGKPVTGAS-----------DNLRE-WWKDKVR 143 (465)
Q Consensus 103 MlKmMEvC~AqGFVYG---IIpekGKPvsGaS-----------dnlR~-WWKekVr 143 (465)
|-|+++.|+.+|||+. |-|-+ -+|+|.- .||.. ||++.+.
T Consensus 24 ~~~~~~l~krrgf~~~s~eiy~g~-~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~ 78 (454)
T 1g5h_A 24 REALVDLCRRRHFLSGTPQQLSTA-ALLSGCHARFGPLGVELRKNLASQWWSSMVV 78 (454)
T ss_dssp -CHHHHHHHHTTSBCCCGGGGSHH-HHHHCCSCCBCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCccccchhcccC-CCCCcceeeeCchHHHHHHHHHHHHHHHHhh
Confidence 6789999999999763 22211 3677755 47877 8887554
No 7
>2d42_A Non-toxic crystal protein; parasporin, bacterial toxin, beta-pore-forming toxin, parasporal inclusion, hinge-bending motion; 2.07A {Bacillus thuringiensis}
Probab=14.51 E-value=69 Score=31.04 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=12.7
Q ss_pred HHHHHhhccceeee
Q 012340 106 MMEVCKAQGFVYGI 119 (465)
Q Consensus 106 mMEvC~AqGFVYGI 119 (465)
||++|+|+|+-||.
T Consensus 13 ~~~~~~~~~~ty~~ 26 (249)
T 2d42_A 13 GMQYANSHQYTYGS 26 (249)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHhhhccceecc
Confidence 68999999999984
No 8
>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical activity, insulin mutant, cross-LINK, glucose metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1 PDB: 6ins_E 1sju_A 2jzq_A
Probab=14.18 E-value=39 Score=25.58 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=10.6
Q ss_pred HHHHHhhccceee
Q 012340 106 MMEVCKAQGFVYG 118 (465)
Q Consensus 106 mMEvC~AqGFVYG 118 (465)
|--||..+||.|.
T Consensus 15 L~~vC~~rgf~~~ 27 (53)
T 1zei_A 15 LYLVCGERGFFYT 27 (53)
T ss_dssp HHHHHGGGCEEEE
T ss_pred HHHHHcccCeecC
Confidence 4568999999996
No 9
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=13.30 E-value=66 Score=26.39 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=11.1
Q ss_pred eccCCCccccCCC
Q 012340 119 IIPEKGKPVTGAS 131 (465)
Q Consensus 119 IIpekGKPvsGaS 131 (465)
|+.++||||+||.
T Consensus 7 V~d~~GkPV~gA~ 19 (82)
T 3e8v_A 7 VTDAEGQPVADAT 19 (82)
T ss_dssp EECTTSCBCTTCE
T ss_pred EEcCCCCCCCCCE
Confidence 6788999999984
No 10
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=12.42 E-value=1.1e+02 Score=25.05 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=26.3
Q ss_pred HHHHHHHhh---ccceeeeccCCCccccCCChh
Q 012340 104 LKMMEVCKA---QGFVYGIIPEKGKPVTGASDN 133 (465)
Q Consensus 104 lKmMEvC~A---qGFVYGIIpekGKPvsGaSdn 133 (465)
-||.++|+- +.|.==-+.|.|.|++=|||+
T Consensus 33 ~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~ 65 (89)
T 1vd2_A 33 NEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQL 65 (89)
T ss_dssp HHHHHHTTCCSSCCEEEEECCSSSCCEECCSHH
T ss_pred HHHHHHhCCCCCCeEEEEEECCCCCcccccCHH
Confidence 478889994 789988999999999999996
Done!