Query 012341
Match_columns 465
No_of_seqs 270 out of 2313
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 01:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0133 TrpB Tryptophan syntha 100.0 1.7E-89 3.8E-94 652.0 36.1 391 68-464 1-391 (396)
2 PLN02618 tryptophan synthase, 100.0 1.2E-81 2.6E-86 642.7 44.1 406 60-465 3-408 (410)
3 PRK04346 tryptophan synthase s 100.0 2.1E-81 4.5E-86 640.1 44.4 392 68-464 3-394 (397)
4 PRK13028 tryptophan synthase s 100.0 2.1E-79 4.6E-84 626.2 44.6 395 65-464 4-398 (402)
5 KOG1395 Tryptophan synthase be 100.0 6.1E-78 1.3E-82 577.9 34.1 449 3-464 8-459 (477)
6 PRK13802 bifunctional indole-3 100.0 3.9E-74 8.5E-79 616.8 43.3 397 68-464 271-674 (695)
7 PRK13803 bifunctional phosphor 100.0 1.6E-73 3.5E-78 613.8 43.2 391 68-464 216-606 (610)
8 TIGR00263 trpB tryptophan synt 100.0 1.6E-68 3.5E-73 548.2 42.1 385 74-463 1-385 (385)
9 COG1171 IlvA Threonine dehydra 100.0 5.2E-58 1.1E-62 452.5 29.9 319 87-464 4-325 (347)
10 cd06446 Trp-synth_B Tryptophan 100.0 1.1E-56 2.3E-61 458.4 35.7 364 91-459 2-365 (365)
11 PRK08526 threonine dehydratase 100.0 8.9E-54 1.9E-58 440.6 33.0 313 90-463 2-316 (403)
12 PRK12483 threonine dehydratase 100.0 2E-52 4.3E-57 439.9 34.4 307 111-463 26-335 (521)
13 KOG1251 Serine racemase [Signa 100.0 3.7E-53 8.1E-58 390.0 22.6 312 89-462 6-319 (323)
14 PRK08639 threonine dehydratase 100.0 4E-52 8.6E-57 432.0 31.8 316 90-463 7-326 (420)
15 PLN02970 serine racemase 100.0 1.4E-51 3E-56 415.2 34.4 313 91-464 10-327 (328)
16 PRK08198 threonine dehydratase 100.0 1.2E-51 2.5E-56 427.6 33.1 313 90-463 4-317 (404)
17 PRK07048 serine/threonine dehy 100.0 1.3E-51 2.8E-56 414.8 32.2 314 90-464 6-320 (321)
18 PRK06110 hypothetical protein; 100.0 1.1E-51 2.3E-56 415.4 31.2 313 89-463 2-316 (322)
19 PRK06382 threonine dehydratase 100.0 3.5E-51 7.5E-56 423.4 35.4 312 91-463 8-320 (406)
20 PLN02550 threonine dehydratase 100.0 1.4E-51 3E-56 435.8 33.0 306 111-463 98-407 (591)
21 TIGR02079 THD1 threonine dehyd 100.0 1.2E-51 2.5E-56 426.6 31.6 306 115-463 9-315 (409)
22 TIGR01124 ilvA_2Cterm threonin 100.0 3.6E-51 7.9E-56 430.7 35.2 308 110-463 5-315 (499)
23 PRK07476 eutB threonine dehydr 100.0 5.8E-51 1.2E-55 410.0 33.8 312 91-464 2-317 (322)
24 PRK06608 threonine dehydratase 100.0 9.7E-51 2.1E-55 409.8 32.6 312 90-463 5-319 (338)
25 PRK08813 threonine dehydratase 100.0 1.5E-50 3.3E-55 407.1 33.5 299 91-464 22-320 (349)
26 PRK09224 threonine dehydratase 100.0 1.7E-50 3.8E-55 427.2 34.3 307 111-463 9-318 (504)
27 PRK08638 threonine dehydratase 100.0 2.4E-50 5.2E-55 406.2 33.1 314 91-464 10-325 (333)
28 TIGR02991 ectoine_eutB ectoine 100.0 2.6E-50 5.6E-55 404.0 33.0 311 91-464 2-316 (317)
29 PLN02356 phosphateglycerate ki 100.0 2E-50 4.4E-55 412.9 31.6 310 114-460 45-401 (423)
30 KOG1250 Threonine/serine dehyd 100.0 5.5E-51 1.2E-55 398.8 25.5 301 115-461 59-361 (457)
31 TIGR01127 ilvA_1Cterm threonin 100.0 3.2E-50 6.9E-55 413.8 31.6 294 124-463 1-295 (380)
32 PRK06815 hypothetical protein; 100.0 8.5E-50 1.8E-54 400.7 32.8 310 92-463 4-316 (317)
33 PRK08246 threonine dehydratase 100.0 1.1E-49 2.4E-54 398.4 32.8 306 89-459 4-309 (310)
34 cd06448 L-Ser-dehyd Serine deh 100.0 1.1E-49 2.4E-54 399.3 32.4 304 123-465 1-315 (316)
35 PRK10717 cysteine synthase A; 100.0 1.9E-49 4.1E-54 400.5 31.8 303 115-460 6-316 (330)
36 PRK07334 threonine dehydratase 100.0 2.3E-49 5.1E-54 409.6 31.0 311 90-463 5-316 (403)
37 PRK02991 D-serine dehydratase; 100.0 8.1E-49 1.8E-53 405.9 33.7 344 91-464 42-435 (441)
38 COG0031 CysK Cysteine synthase 100.0 8.8E-49 1.9E-53 380.5 31.6 289 116-457 5-299 (300)
39 TIGR01415 trpB_rel pyridoxal-p 100.0 1.8E-48 3.8E-53 401.8 35.1 330 111-464 57-417 (419)
40 cd01562 Thr-dehyd Threonine de 100.0 9.7E-49 2.1E-53 391.2 30.9 302 92-454 1-303 (304)
41 PLN02565 cysteine synthase 100.0 1.9E-48 4E-53 390.7 31.9 291 116-458 9-305 (322)
42 PRK07591 threonine synthase; V 100.0 5.1E-48 1.1E-52 400.9 33.1 301 123-464 89-402 (421)
43 PRK08206 diaminopropionate amm 100.0 7.7E-48 1.7E-52 396.7 34.0 320 91-463 25-393 (399)
44 PRK11761 cysM cysteine synthas 100.0 3.4E-48 7.4E-53 385.1 30.1 283 115-458 5-291 (296)
45 PRK12391 tryptophan synthase s 100.0 1.3E-47 2.8E-52 395.8 35.4 330 110-464 66-426 (427)
46 TIGR01136 cysKM cysteine synth 100.0 6.8E-48 1.5E-52 384.2 32.0 289 118-458 3-296 (299)
47 TIGR01138 cysM cysteine syntha 100.0 6.5E-48 1.4E-52 382.2 30.9 282 116-458 2-287 (290)
48 PRK08197 threonine synthase; V 100.0 8.3E-48 1.8E-52 397.0 31.6 302 123-465 79-393 (394)
49 TIGR01139 cysK cysteine syntha 100.0 1.2E-47 2.7E-52 382.2 31.6 289 118-458 3-295 (298)
50 cd01561 CBS_like CBS_like: Thi 100.0 3.2E-47 6.9E-52 378.0 31.8 284 123-457 2-291 (291)
51 PRK06352 threonine synthase; V 100.0 2.3E-47 5E-52 387.6 29.8 293 120-464 26-329 (351)
52 TIGR02035 D_Ser_am_lyase D-ser 100.0 6.1E-47 1.3E-51 390.5 33.0 347 89-462 35-430 (431)
53 cd06447 D-Ser-dehyd D-Serine d 100.0 5.6E-47 1.2E-51 387.8 32.4 334 73-451 5-399 (404)
54 PLN03013 cysteine synthase 100.0 7.8E-47 1.7E-51 386.6 32.9 293 115-459 116-415 (429)
55 PRK07409 threonine synthase; V 100.0 7.8E-47 1.7E-51 384.7 32.2 293 119-463 28-332 (353)
56 PLN00011 cysteine synthase 100.0 1.5E-46 3.3E-51 377.8 33.4 291 116-458 11-307 (323)
57 PLN02556 cysteine synthase/L-3 100.0 8.9E-47 1.9E-51 384.1 31.3 293 115-459 52-350 (368)
58 PRK06260 threonine synthase; V 100.0 8.6E-47 1.9E-51 389.8 31.3 299 120-461 65-376 (397)
59 cd01563 Thr-synth_1 Threonine 100.0 9.6E-47 2.1E-51 380.1 29.5 294 119-455 19-324 (324)
60 PRK06721 threonine synthase; R 100.0 4.6E-46 1E-50 378.4 33.3 292 118-460 24-325 (352)
61 PRK06381 threonine synthase; V 100.0 8E-46 1.7E-50 372.6 31.7 297 114-451 7-317 (319)
62 TIGR01747 diampropi_NH3ly diam 100.0 1.3E-45 2.9E-50 376.4 33.6 311 114-463 15-374 (376)
63 TIGR03528 2_3_DAP_am_ly diamin 100.0 3E-45 6.6E-50 376.2 33.4 310 115-463 35-393 (396)
64 PLN02569 threonine synthase 100.0 4.9E-45 1.1E-49 381.8 32.9 299 123-462 133-448 (484)
65 TIGR01137 cysta_beta cystathio 100.0 4.5E-45 9.8E-50 384.2 31.2 298 116-459 5-309 (454)
66 TIGR00260 thrC threonine synth 100.0 3E-45 6.5E-50 369.9 26.8 293 122-457 22-328 (328)
67 PRK06450 threonine synthase; V 100.0 1.9E-44 4.2E-49 363.5 28.8 270 123-456 58-338 (338)
68 PRK08329 threonine synthase; V 100.0 7.6E-44 1.6E-48 361.5 30.3 273 123-456 64-347 (347)
69 PRK05638 threonine synthase; V 100.0 1.4E-43 3E-48 370.5 30.2 285 119-456 63-359 (442)
70 TIGR03844 cysteate_syn cysteat 100.0 4.9E-43 1.1E-47 359.8 29.0 301 123-458 62-385 (398)
71 PF00291 PALP: Pyridoxal-phosp 100.0 1.5E-43 3.3E-48 353.5 22.7 296 116-450 1-306 (306)
72 COG0498 ThrC Threonine synthas 100.0 1.5E-42 3.1E-47 352.9 26.1 338 73-461 20-381 (411)
73 cd00640 Trp-synth-beta_II Tryp 100.0 5E-42 1.1E-46 332.3 27.1 240 124-451 1-244 (244)
74 PRK03910 D-cysteine desulfhydr 100.0 3.5E-42 7.5E-47 347.7 27.1 306 116-462 9-328 (331)
75 PRK12390 1-aminocyclopropane-1 100.0 7.6E-42 1.7E-46 346.0 28.4 296 119-451 12-324 (337)
76 PRK09225 threonine synthase; V 100.0 1E-41 2.2E-46 354.2 29.7 345 73-464 20-423 (462)
77 TIGR01275 ACC_deam_rel pyridox 100.0 3.4E-42 7.5E-47 345.1 25.2 290 119-454 3-302 (311)
78 TIGR01274 ACC_deam 1-aminocycl 100.0 2.6E-41 5.6E-46 342.1 29.2 306 122-463 13-334 (337)
79 cd01560 Thr-synth_2 Threonine 100.0 4.6E-41 1E-45 349.4 31.5 349 73-464 19-427 (460)
80 cd06449 ACCD Aminocyclopropane 100.0 4E-41 8.6E-46 336.7 27.0 291 124-451 1-307 (307)
81 COG1350 Predicted alternative 100.0 1.3E-39 2.8E-44 311.3 26.6 332 109-464 65-427 (432)
82 KOG1252 Cystathionine beta-syn 100.0 1.4E-40 2.9E-45 321.3 19.8 294 116-459 46-348 (362)
83 KOG1481 Cysteine synthase [Ami 100.0 6.4E-39 1.4E-43 300.7 20.4 313 115-460 42-367 (391)
84 PRK14045 1-aminocyclopropane-1 100.0 2.4E-38 5.3E-43 319.2 23.3 294 115-451 14-314 (329)
85 COG2515 Acd 1-aminocyclopropan 100.0 1.1E-27 2.4E-32 229.2 21.9 291 118-451 10-312 (323)
86 COG3048 DsdA D-serine dehydrat 99.9 2.5E-20 5.5E-25 177.6 23.6 316 123-464 78-440 (443)
87 KOG2616 Pyridoxalphosphate-dep 96.9 0.0013 2.8E-08 61.2 5.3 69 396-464 147-215 (266)
88 PF14821 Thr_synth_N: Threonin 94.9 0.031 6.8E-07 44.3 3.6 44 75-118 21-77 (79)
89 PTZ00317 NADP-dependent malic 81.0 83 0.0018 34.3 16.6 83 107-197 227-317 (559)
90 PF00764 Arginosuc_synth: Argi 80.8 15 0.00032 38.1 10.6 130 180-327 1-138 (388)
91 PF00106 adh_short: short chai 78.7 22 0.00049 31.1 10.1 83 178-261 2-85 (167)
92 PRK06128 oxidoreductase; Provi 71.9 49 0.0011 32.5 11.5 75 177-252 56-130 (300)
93 PF05368 NmrA: NmrA-like famil 71.7 18 0.00038 34.1 7.9 51 179-233 1-51 (233)
94 PF00070 Pyr_redox: Pyridine n 69.9 29 0.00062 26.8 7.5 50 182-231 4-59 (80)
95 COG1751 Uncharacterized conser 68.9 33 0.00072 30.7 8.1 77 155-232 7-89 (186)
96 PRK07523 gluconate 5-dehydroge 68.2 88 0.0019 29.5 12.1 73 177-252 11-83 (255)
97 PRK13529 malate dehydrogenase; 65.2 2.1E+02 0.0046 31.2 16.2 83 108-198 226-316 (563)
98 PRK07109 short chain dehydroge 64.4 88 0.0019 31.5 11.7 74 177-253 9-82 (334)
99 PRK12937 short chain dehydroge 62.7 1.1E+02 0.0023 28.6 11.4 84 177-262 6-89 (245)
100 PRK07097 gluconate 5-dehydroge 62.0 1E+02 0.0022 29.4 11.3 72 177-251 11-82 (265)
101 PRK12743 oxidoreductase; Provi 61.6 1.1E+02 0.0023 29.1 11.3 57 178-235 4-60 (256)
102 PRK08416 7-alpha-hydroxysteroi 61.5 1E+02 0.0022 29.4 11.1 84 177-262 9-93 (260)
103 PRK08862 short chain dehydroge 61.3 1.1E+02 0.0025 28.6 11.3 73 178-253 7-79 (227)
104 PRK12481 2-deoxy-D-gluconate 3 61.2 91 0.002 29.6 10.7 72 177-253 9-80 (251)
105 PRK12744 short chain dehydroge 60.6 1.1E+02 0.0024 28.9 11.2 74 177-251 9-84 (257)
106 PRK06194 hypothetical protein; 60.3 1.3E+02 0.0029 28.9 11.9 82 177-261 7-88 (287)
107 PRK05370 argininosuccinate syn 60.2 1.2E+02 0.0027 31.9 11.8 59 175-234 10-73 (447)
108 PRK06935 2-deoxy-D-gluconate 3 58.9 1.5E+02 0.0032 28.1 11.7 74 177-254 16-89 (258)
109 PRK12939 short chain dehydroge 58.8 1.6E+02 0.0034 27.5 12.1 70 177-249 8-77 (250)
110 PRK08277 D-mannonate oxidoredu 58.8 1.7E+02 0.0037 28.0 12.3 82 177-261 11-92 (278)
111 PRK13394 3-hydroxybutyrate deh 58.3 1.6E+02 0.0036 27.6 12.1 57 177-235 8-64 (262)
112 TIGR01832 kduD 2-deoxy-D-gluco 57.9 1.3E+02 0.0029 28.1 11.2 81 177-262 6-86 (248)
113 PRK06139 short chain dehydroge 57.9 1E+02 0.0022 31.1 10.8 83 177-262 8-90 (330)
114 TIGR00561 pntA NAD(P) transhyd 57.5 1.1E+02 0.0025 32.9 11.4 50 179-234 166-215 (511)
115 PRK12938 acetyacetyl-CoA reduc 57.0 1.5E+02 0.0032 27.7 11.3 84 177-262 4-87 (246)
116 TIGR02825 B4_12hDH leukotriene 57.0 69 0.0015 31.7 9.4 49 177-231 140-188 (325)
117 PRK07478 short chain dehydroge 56.4 1.4E+02 0.003 28.1 11.1 83 177-262 7-89 (254)
118 PRK06182 short chain dehydroge 56.2 1.3E+02 0.0027 28.9 10.9 77 177-262 4-80 (273)
119 PRK08589 short chain dehydroge 55.9 1.5E+02 0.0032 28.5 11.3 82 177-262 7-88 (272)
120 PRK08226 short chain dehydroge 55.9 1.4E+02 0.003 28.3 11.0 73 177-253 7-79 (263)
121 PRK12823 benD 1,6-dihydroxycyc 55.7 1.3E+02 0.0028 28.4 10.8 83 177-263 9-91 (260)
122 PRK05866 short chain dehydroge 55.7 1.8E+02 0.004 28.4 12.0 83 178-263 42-124 (293)
123 TIGR02415 23BDH acetoin reduct 55.6 1.8E+02 0.0039 27.3 11.7 73 178-253 2-74 (254)
124 cd08294 leukotriene_B4_DH_like 54.9 84 0.0018 30.9 9.6 49 177-231 145-193 (329)
125 PRK08063 enoyl-(acyl carrier p 54.7 1.7E+02 0.0037 27.3 11.3 74 177-252 5-78 (250)
126 PRK08993 2-deoxy-D-gluconate 3 54.5 1.9E+02 0.004 27.4 11.6 81 177-262 11-91 (253)
127 cd08281 liver_ADH_like1 Zinc-d 54.5 2.2E+02 0.0048 28.8 12.8 47 178-230 194-240 (371)
128 PRK07890 short chain dehydroge 54.3 1.9E+02 0.0041 27.1 11.7 83 177-262 6-88 (258)
129 PRK05867 short chain dehydroge 54.2 1.7E+02 0.0037 27.6 11.3 74 177-253 10-83 (253)
130 PF02887 PK_C: Pyruvate kinase 54.1 95 0.0021 26.0 8.4 63 165-234 6-68 (117)
131 PRK08936 glucose-1-dehydrogena 54.0 2E+02 0.0043 27.2 11.9 75 177-253 8-82 (261)
132 cd01011 nicotinamidase Nicotin 53.9 58 0.0012 30.1 7.6 63 168-230 130-196 (196)
133 PRK06947 glucose-1-dehydrogena 53.9 1.9E+02 0.0041 27.0 11.6 72 178-251 4-75 (248)
134 PRK05876 short chain dehydroge 53.7 1.9E+02 0.0041 27.9 11.7 83 177-262 7-89 (275)
135 PRK06077 fabG 3-ketoacyl-(acyl 53.4 1.7E+02 0.0038 27.2 11.2 83 177-261 7-89 (252)
136 PRK08303 short chain dehydroge 52.6 1.8E+02 0.0039 28.8 11.5 87 177-264 9-103 (305)
137 PRK07035 short chain dehydroge 52.3 2E+02 0.0044 26.9 11.7 83 177-262 9-91 (252)
138 PRK13656 trans-2-enoyl-CoA red 51.6 3.1E+02 0.0066 28.7 13.2 111 152-266 14-141 (398)
139 KOG0025 Zn2+-binding dehydroge 51.4 1.2E+02 0.0026 30.3 9.4 86 145-233 124-216 (354)
140 PRK07985 oxidoreductase; Provi 50.6 2.5E+02 0.0054 27.4 16.1 85 177-262 50-134 (294)
141 cd08295 double_bond_reductase_ 50.5 1E+02 0.0022 30.7 9.4 49 177-231 153-202 (338)
142 PRK06114 short chain dehydroge 49.9 2.3E+02 0.0049 26.7 12.0 74 177-252 9-82 (254)
143 PF03853 YjeF_N: YjeF-related 49.9 1.9E+02 0.004 26.1 10.1 57 176-232 25-87 (169)
144 PF08659 KR: KR domain; Inter 49.5 2E+02 0.0043 25.9 13.0 71 179-250 3-75 (181)
145 PF01210 NAD_Gly3P_dh_N: NAD-d 49.3 21 0.00045 31.8 3.7 30 181-210 3-32 (157)
146 PTZ00323 NAD+ synthase; Provis 49.3 2.3E+02 0.005 28.3 11.4 63 172-234 42-113 (294)
147 TIGR00670 asp_carb_tr aspartat 49.2 1.1E+02 0.0023 30.7 9.1 47 186-233 162-208 (301)
148 PLN03050 pyridoxine (pyridoxam 49.0 1.1E+02 0.0024 29.6 9.0 53 177-229 61-117 (246)
149 PRK07791 short chain dehydroge 48.6 2.5E+02 0.0055 27.2 11.8 85 177-262 7-98 (286)
150 PRK07454 short chain dehydroge 48.5 2.3E+02 0.0049 26.3 11.5 82 177-261 7-88 (241)
151 PRK09730 putative NAD(P)-bindi 48.2 2.3E+02 0.005 26.3 11.6 72 178-251 3-74 (247)
152 PRK12745 3-ketoacyl-(acyl-carr 48.1 2.4E+02 0.0052 26.4 11.7 82 178-261 4-85 (256)
153 PRK07792 fabG 3-ketoacyl-(acyl 48.0 2.8E+02 0.0061 27.2 12.2 73 177-251 13-85 (306)
154 PRK09424 pntA NAD(P) transhydr 47.9 3.9E+02 0.0085 28.9 14.8 50 178-233 166-215 (509)
155 PRK07370 enoyl-(acyl carrier p 47.7 1.9E+02 0.0041 27.6 10.5 75 178-253 8-84 (258)
156 PLN03129 NADP-dependent malic 47.5 4.2E+02 0.0091 29.1 17.9 83 109-198 252-342 (581)
157 PRK05557 fabG 3-ketoacyl-(acyl 47.1 2.3E+02 0.0051 26.1 12.0 72 177-250 6-77 (248)
158 PRK07806 short chain dehydroge 47.1 2.4E+02 0.0053 26.2 11.2 58 177-235 7-64 (248)
159 PRK07677 short chain dehydroge 46.8 2.3E+02 0.0051 26.6 10.9 82 178-262 3-84 (252)
160 PRK05717 oxidoreductase; Valid 46.7 2.5E+02 0.0054 26.4 11.1 71 177-253 11-81 (255)
161 PRK08643 acetoin reductase; Va 46.6 2.4E+02 0.0051 26.5 11.0 73 178-253 4-76 (256)
162 PRK05693 short chain dehydroge 46.1 2.2E+02 0.0047 27.2 10.7 51 178-234 3-53 (274)
163 cd08291 ETR_like_1 2-enoyl thi 45.7 1.4E+02 0.0031 29.3 9.6 49 178-232 145-194 (324)
164 TIGR03325 BphB_TodD cis-2,3-di 45.5 2.4E+02 0.0052 26.7 10.8 79 177-262 6-85 (262)
165 PRK08265 short chain dehydroge 45.4 2.6E+02 0.0056 26.5 11.1 71 177-253 7-77 (261)
166 PRK12825 fabG 3-ketoacyl-(acyl 45.3 2.5E+02 0.0054 25.8 11.7 58 177-235 7-64 (249)
167 cd01455 vWA_F11C1-5a_type Von 45.1 51 0.0011 30.7 5.7 34 420-453 89-123 (191)
168 PRK06181 short chain dehydroge 45.1 2.7E+02 0.0059 26.2 11.9 81 178-261 3-83 (263)
169 PRK08213 gluconate 5-dehydroge 45.0 2.7E+02 0.0059 26.2 11.6 73 177-252 13-85 (259)
170 PRK07832 short chain dehydroge 45.0 1.8E+02 0.0039 27.8 10.0 50 178-229 2-51 (272)
171 TIGR03206 benzo_BadH 2-hydroxy 44.9 2.4E+02 0.0053 26.2 10.7 74 177-253 4-77 (250)
172 PRK06172 short chain dehydroge 44.7 2.7E+02 0.0058 26.1 11.9 71 177-250 8-78 (253)
173 PRK08628 short chain dehydroge 44.3 2.5E+02 0.0055 26.3 10.8 72 177-252 8-79 (258)
174 PF07279 DUF1442: Protein of u 44.2 1.2E+02 0.0026 28.9 7.9 50 176-227 42-94 (218)
175 PLN03154 putative allyl alcoho 44.2 1.3E+02 0.0029 30.2 9.2 49 177-231 160-209 (348)
176 cd08301 alcohol_DH_plants Plan 44.1 78 0.0017 32.1 7.5 48 179-231 190-237 (369)
177 PRK08085 gluconate 5-dehydroge 43.8 2.8E+02 0.0061 26.0 11.9 74 177-253 10-83 (254)
178 TIGR03366 HpnZ_proposed putati 43.7 97 0.0021 30.0 7.8 48 179-231 123-170 (280)
179 COG2242 CobL Precorrin-6B meth 43.5 2.7E+02 0.0059 25.8 12.1 48 144-195 6-53 (187)
180 PRK08340 glucose-1-dehydrogena 43.5 2.4E+02 0.0053 26.6 10.5 31 178-208 2-32 (259)
181 PRK10538 malonic semialdehyde 43.4 2.6E+02 0.0056 26.2 10.6 30 178-207 2-31 (248)
182 PRK07666 fabG 3-ketoacyl-(acyl 43.2 2.7E+02 0.0059 25.7 11.6 71 177-250 8-78 (239)
183 PF00107 ADH_zinc_N: Zinc-bind 43.1 1.1E+02 0.0024 25.5 7.2 40 189-234 3-42 (130)
184 PRK05565 fabG 3-ketoacyl-(acyl 43.0 2.7E+02 0.0059 25.7 11.3 74 177-252 6-79 (247)
185 TIGR02685 pter_reduc_Leis pter 42.9 3E+02 0.0066 26.1 11.4 30 178-207 3-32 (267)
186 TIGR02822 adh_fam_2 zinc-bindi 42.7 85 0.0019 31.4 7.4 47 179-231 168-214 (329)
187 PRK07062 short chain dehydroge 41.9 2.9E+02 0.0063 26.1 10.8 33 177-209 9-41 (265)
188 PRK05993 short chain dehydroge 41.6 3.1E+02 0.0068 26.3 11.1 51 178-234 6-56 (277)
189 cd08296 CAD_like Cinnamyl alco 41.6 1E+02 0.0022 30.7 7.7 45 178-229 166-210 (333)
190 cd01012 YcaC_related YcaC rela 41.5 2E+02 0.0043 25.3 8.9 61 171-231 83-147 (157)
191 PRK06123 short chain dehydroge 41.3 3E+02 0.0064 25.6 11.7 83 178-262 4-86 (248)
192 PRK05854 short chain dehydroge 41.2 2.9E+02 0.0062 27.3 10.9 83 177-262 15-99 (313)
193 PRK08217 fabG 3-ketoacyl-(acyl 41.2 3E+02 0.0064 25.5 11.5 71 177-250 6-76 (253)
194 PRK06949 short chain dehydroge 40.8 3.1E+02 0.0067 25.6 11.8 33 177-209 10-42 (258)
195 cd08293 PTGR2 Prostaglandin re 40.3 2E+02 0.0044 28.4 9.8 50 177-232 156-207 (345)
196 PRK06200 2,3-dihydroxy-2,3-dih 40.0 3.3E+02 0.0071 25.7 10.9 31 177-207 7-37 (263)
197 PLN02586 probable cinnamyl alc 40.0 1.1E+02 0.0024 31.0 7.8 47 179-230 186-232 (360)
198 PF00107 ADH_zinc_N: Zinc-bind 39.8 62 0.0014 27.0 5.1 40 288-329 49-89 (130)
199 TIGR01830 3oxo_ACP_reduc 3-oxo 38.8 3.1E+02 0.0068 25.1 10.4 68 180-249 2-69 (239)
200 PRK12826 3-ketoacyl-(acyl-carr 38.8 3.2E+02 0.007 25.3 11.8 72 177-251 7-78 (251)
201 PF00857 Isochorismatase: Isoc 38.7 1.4E+02 0.003 26.4 7.5 62 170-231 106-171 (174)
202 cd08256 Zn_ADH2 Alcohol dehydr 38.7 2.1E+02 0.0045 28.5 9.6 49 177-231 176-224 (350)
203 PRK08251 short chain dehydroge 38.5 3.3E+02 0.0072 25.3 11.4 73 178-253 4-78 (248)
204 PRK08278 short chain dehydroge 38.3 3.6E+02 0.0079 25.8 11.6 75 177-252 7-86 (273)
205 COG0300 DltE Short-chain dehyd 38.3 3.7E+02 0.0081 26.4 10.7 59 176-235 6-64 (265)
206 PRK12935 acetoacetyl-CoA reduc 38.2 3.3E+02 0.0072 25.3 11.8 74 177-252 7-80 (247)
207 PRK09135 pteridine reductase; 38.1 3.3E+02 0.0071 25.2 11.7 33 177-209 7-39 (249)
208 COG0078 ArgF Ornithine carbamo 38.1 2.6E+02 0.0056 28.1 9.5 56 178-233 155-213 (310)
209 TIGR01831 fabG_rel 3-oxoacyl-( 37.9 3.3E+02 0.0072 25.1 11.3 71 180-252 2-72 (239)
210 PF03808 Glyco_tran_WecB: Glyc 37.6 3.1E+02 0.0067 24.7 10.1 103 188-309 12-114 (172)
211 TIGR02819 fdhA_non_GSH formald 37.5 2.2E+02 0.0047 29.4 9.7 48 177-230 187-234 (393)
212 PTZ00331 alpha/beta hydrolase; 37.4 2.2E+02 0.0048 26.7 8.9 62 170-231 140-205 (212)
213 PLN02918 pyridoxine (pyridoxam 37.3 1.9E+02 0.0041 31.5 9.2 53 177-229 136-192 (544)
214 PRK06197 short chain dehydroge 37.3 3.5E+02 0.0075 26.4 10.8 33 177-209 17-49 (306)
215 TIGR02818 adh_III_F_hyde S-(hy 37.0 1.1E+02 0.0024 31.1 7.3 48 178-231 188-235 (368)
216 PRK06483 dihydromonapterin red 36.8 3.4E+02 0.0075 25.0 11.5 67 178-252 4-70 (236)
217 cd08230 glucose_DH Glucose deh 36.8 1.1E+02 0.0025 30.7 7.3 49 178-230 175-223 (355)
218 cd08231 MDR_TM0436_like Hypoth 36.8 1.3E+02 0.0029 30.1 7.9 46 177-229 179-225 (361)
219 cd08300 alcohol_DH_class_III c 36.7 1.2E+02 0.0026 30.7 7.6 49 177-231 188-236 (368)
220 PRK09880 L-idonate 5-dehydroge 36.7 1.3E+02 0.0029 30.0 7.8 49 177-231 171-219 (343)
221 PRK06113 7-alpha-hydroxysteroi 36.3 3.7E+02 0.008 25.2 11.4 75 176-253 11-85 (255)
222 PRK12859 3-ketoacyl-(acyl-carr 35.9 3.8E+02 0.0082 25.3 11.9 84 177-261 7-101 (256)
223 PRK06701 short chain dehydroge 35.9 4.2E+02 0.0091 25.8 15.8 74 177-252 47-120 (290)
224 PRK07067 sorbitol dehydrogenas 35.9 3.7E+02 0.0081 25.2 11.6 32 177-208 7-38 (257)
225 PRK05653 fabG 3-ketoacyl-(acyl 35.8 3.5E+02 0.0076 24.8 10.9 56 177-234 6-61 (246)
226 TIGR01829 AcAcCoA_reduct aceto 35.7 3.5E+02 0.0077 24.8 11.8 73 178-252 2-74 (242)
227 PRK09134 short chain dehydroge 35.7 3.8E+02 0.0082 25.2 12.0 72 177-250 10-81 (258)
228 PLN02740 Alcohol dehydrogenase 35.6 1.2E+02 0.0026 30.9 7.4 46 179-230 201-247 (381)
229 COG0604 Qor NADPH:quinone redu 35.6 2.3E+02 0.005 28.5 9.2 50 177-232 144-193 (326)
230 COG1063 Tdh Threonine dehydrog 35.5 4.8E+02 0.011 26.4 12.9 50 179-233 171-221 (350)
231 PLN02178 cinnamyl-alcohol dehy 35.4 1.7E+02 0.0037 29.9 8.4 48 179-231 181-228 (375)
232 PF01041 DegT_DnrJ_EryC1: DegT 35.3 1.6E+02 0.0034 30.0 8.1 59 171-235 35-95 (363)
233 PRK12824 acetoacetyl-CoA reduc 35.2 3.6E+02 0.0079 24.8 11.8 73 178-252 4-76 (245)
234 cd08270 MDR4 Medium chain dehy 34.9 1.7E+02 0.0036 28.3 8.0 47 177-229 134-180 (305)
235 cd08239 THR_DH_like L-threonin 34.9 1.1E+02 0.0025 30.3 6.9 48 177-231 165-213 (339)
236 TIGR01316 gltA glutamate synth 34.6 1.1E+02 0.0024 32.2 7.1 53 180-232 275-329 (449)
237 PRK06198 short chain dehydroge 34.6 3.9E+02 0.0085 25.0 11.5 72 177-250 7-78 (260)
238 PRK07814 short chain dehydroge 34.6 4E+02 0.0087 25.2 11.6 73 177-252 11-83 (263)
239 cd08277 liver_alcohol_DH_like 34.6 1.2E+02 0.0026 30.7 7.1 46 178-230 187-233 (365)
240 PRK12429 3-hydroxybutyrate deh 34.3 3.9E+02 0.0084 24.9 12.0 71 177-250 5-75 (258)
241 cd08297 CAD3 Cinnamyl alcohol 34.1 1.5E+02 0.0032 29.4 7.6 48 177-230 167-214 (341)
242 TIGR03451 mycoS_dep_FDH mycoth 33.8 2.5E+02 0.0054 28.2 9.3 49 177-231 178-226 (358)
243 PRK12827 short chain dehydroge 33.6 3.9E+02 0.0084 24.7 12.0 75 177-252 7-83 (249)
244 cd08242 MDR_like Medium chain 33.6 1.4E+02 0.003 29.3 7.2 46 178-230 158-203 (319)
245 PRK06463 fabG 3-ketoacyl-(acyl 33.3 4.1E+02 0.0089 24.9 11.3 69 177-253 8-76 (255)
246 PF00185 OTCace: Aspartate/orn 33.2 2.3E+02 0.0049 25.3 7.9 48 186-233 13-65 (158)
247 PRK06500 short chain dehydroge 32.9 4E+02 0.0087 24.6 11.3 53 177-234 7-59 (249)
248 PF02540 NAD_synthase: NAD syn 32.8 3.5E+02 0.0076 26.0 9.6 64 171-234 13-81 (242)
249 PRK09242 tropinone reductase; 32.6 4.2E+02 0.0091 24.8 10.8 74 177-253 10-85 (257)
250 COG0137 ArgG Argininosuccinate 32.6 4.3E+02 0.0092 27.5 10.3 58 176-233 4-65 (403)
251 PRK00779 ornithine carbamoyltr 32.4 2.1E+02 0.0045 28.7 8.2 56 178-233 154-209 (304)
252 PLN02514 cinnamyl-alcohol dehy 32.3 2.1E+02 0.0044 28.9 8.4 46 179-230 184-229 (357)
253 cd06533 Glyco_transf_WecG_TagA 32.3 3.8E+02 0.0082 24.1 10.8 102 189-309 11-112 (171)
254 PRK06482 short chain dehydroge 32.1 4.5E+02 0.0098 25.0 11.5 32 178-209 4-35 (276)
255 KOG0023 Alcohol dehydrogenase, 32.0 1.9E+02 0.004 29.4 7.5 50 180-234 185-234 (360)
256 cd08292 ETR_like_2 2-enoyl thi 31.7 2.9E+02 0.0062 26.9 9.2 48 177-230 141-188 (324)
257 PRK06180 short chain dehydroge 31.7 4.6E+02 0.01 25.0 11.1 32 177-208 5-36 (277)
258 cd08276 MDR7 Medium chain dehy 31.6 2.9E+02 0.0063 26.8 9.2 47 178-231 163-209 (336)
259 PRK08017 oxidoreductase; Provi 31.5 3.5E+02 0.0077 25.2 9.5 51 178-234 4-54 (256)
260 cd08240 6_hydroxyhexanoate_dh_ 31.5 1.8E+02 0.0038 29.0 7.7 46 178-229 178-223 (350)
261 KOG1205 Predicted dehydrogenas 31.5 4E+02 0.0087 26.4 9.8 85 175-262 11-97 (282)
262 cd00401 AdoHcyase S-adenosyl-L 31.3 1.3E+02 0.0029 31.5 6.8 48 177-230 202-249 (413)
263 PRK07201 short chain dehydroge 31.3 4.3E+02 0.0094 29.0 11.4 83 177-262 372-454 (657)
264 PRK08220 2,3-dihydroxybenzoate 31.1 4.4E+02 0.0094 24.5 10.4 32 177-208 9-40 (252)
265 PRK08642 fabG 3-ketoacyl-(acyl 31.0 4.4E+02 0.0094 24.5 10.5 32 177-208 6-37 (253)
266 PLN02253 xanthoxin dehydrogena 31.0 4.4E+02 0.0095 25.1 10.2 32 177-208 19-50 (280)
267 cd08284 FDH_like_2 Glutathione 30.8 3.7E+02 0.008 26.5 9.9 47 177-229 169-215 (344)
268 cd08233 butanediol_DH_like (2R 30.7 3.2E+02 0.007 27.1 9.5 48 178-231 175-222 (351)
269 PRK06124 gluconate 5-dehydroge 30.6 4.5E+02 0.0098 24.5 11.9 56 177-234 12-67 (256)
270 PRK07231 fabG 3-ketoacyl-(acyl 30.5 4.4E+02 0.0095 24.4 11.1 33 177-209 6-38 (251)
271 cd08274 MDR9 Medium chain dehy 30.3 2.2E+02 0.0047 28.2 8.1 47 177-230 179-225 (350)
272 PF01262 AlaDh_PNT_C: Alanine 30.1 2.3E+02 0.0049 25.3 7.4 50 179-234 22-71 (168)
273 cd05188 MDR Medium chain reduc 30.0 1.5E+02 0.0033 27.7 6.6 45 177-228 136-180 (271)
274 PTZ00354 alcohol dehydrogenase 29.8 2.9E+02 0.0064 26.8 8.9 49 177-231 142-190 (334)
275 PRK05650 short chain dehydroge 29.8 4.9E+02 0.011 24.7 11.9 56 178-235 2-57 (270)
276 PRK05855 short chain dehydroge 29.7 5.5E+02 0.012 27.3 11.6 74 177-253 316-389 (582)
277 cd08254 hydroxyacyl_CoA_DH 6-h 29.6 2.2E+02 0.0047 27.9 7.9 46 178-230 168-213 (338)
278 PF04127 DFP: DNA / pantothena 29.5 96 0.0021 28.6 4.9 48 177-233 20-67 (185)
279 PRK07063 short chain dehydroge 29.4 4.8E+02 0.01 24.5 11.6 83 177-262 8-92 (260)
280 PRK06138 short chain dehydroge 29.3 4.6E+02 0.01 24.3 12.0 73 177-253 6-78 (252)
281 cd08243 quinone_oxidoreductase 29.2 2.1E+02 0.0045 27.7 7.6 48 177-230 144-191 (320)
282 PRK09257 aromatic amino acid a 29.2 4.9E+02 0.011 26.5 10.7 74 155-234 68-149 (396)
283 PF13407 Peripla_BP_4: Peripla 29.1 4.7E+02 0.01 24.3 14.9 134 188-327 16-158 (257)
284 COG0026 PurK Phosphoribosylami 29.1 84 0.0018 32.3 4.7 31 180-210 4-34 (375)
285 TIGR03201 dearomat_had 6-hydro 29.1 1.7E+02 0.0037 29.3 7.1 47 179-231 169-215 (349)
286 cd08298 CAD2 Cinnamyl alcohol 29.0 2E+02 0.0044 28.1 7.6 45 177-228 169-213 (329)
287 cd05280 MDR_yhdh_yhfp Yhdh and 28.9 2.5E+02 0.0055 27.2 8.2 48 177-230 148-195 (325)
288 TIGR01963 PHB_DH 3-hydroxybuty 28.7 4.8E+02 0.01 24.2 11.8 70 178-250 3-72 (255)
289 smart00822 PKS_KR This enzymat 28.5 3.7E+02 0.008 22.8 10.3 57 178-234 2-60 (180)
290 PF13460 NAD_binding_10: NADH( 28.5 1.4E+02 0.0031 26.4 5.8 32 179-210 1-32 (183)
291 PRK10309 galactitol-1-phosphat 28.4 2.4E+02 0.0052 28.1 8.0 47 178-230 163-209 (347)
292 PRK05447 1-deoxy-D-xylulose 5- 28.3 7E+02 0.015 26.0 13.2 53 178-233 3-57 (385)
293 cd08246 crotonyl_coA_red croto 28.3 1.9E+02 0.004 29.6 7.3 49 177-231 195-243 (393)
294 PRK07576 short chain dehydroge 28.2 5.2E+02 0.011 24.5 11.5 73 177-252 10-82 (264)
295 PRK07024 short chain dehydroge 28.1 5.1E+02 0.011 24.3 10.6 31 178-208 4-34 (257)
296 PRK08261 fabG 3-ketoacyl-(acyl 28.0 6.8E+02 0.015 26.0 11.7 70 177-252 211-280 (450)
297 PRK11609 nicotinamidase/pyrazi 27.8 3.5E+02 0.0075 25.1 8.5 61 171-231 137-203 (212)
298 PRK13982 bifunctional SbtC-lik 27.4 92 0.002 33.3 4.9 43 183-234 279-321 (475)
299 TIGR01751 crot-CoA-red crotony 27.4 1.9E+02 0.0042 29.6 7.3 49 177-231 191-239 (398)
300 PLN03049 pyridoxine (pyridoxam 27.4 3.4E+02 0.0074 28.9 9.2 53 177-229 60-116 (462)
301 cd08287 FDH_like_ADH3 formalde 27.2 2.3E+02 0.005 28.0 7.6 47 177-229 170-216 (345)
302 PRK12831 putative oxidoreducta 27.1 1.8E+02 0.0039 30.9 7.1 52 180-231 284-337 (464)
303 cd01015 CSHase N-carbamoylsarc 27.1 3.1E+02 0.0067 24.7 7.8 60 171-230 109-172 (179)
304 PRK07453 protochlorophyllide o 27.0 6.1E+02 0.013 24.9 11.0 32 177-208 7-38 (322)
305 PRK07775 short chain dehydroge 27.0 5.6E+02 0.012 24.4 12.5 70 177-249 11-80 (274)
306 KOG0785 Isocitrate dehydrogena 26.9 1.3E+02 0.0029 30.1 5.4 90 58-153 58-153 (365)
307 cd05284 arabinose_DH_like D-ar 26.8 2.3E+02 0.0049 28.0 7.5 46 177-229 169-215 (340)
308 PF13450 NAD_binding_8: NAD(P) 26.8 94 0.002 23.4 3.6 26 184-209 3-28 (68)
309 PRK06924 short chain dehydroge 26.8 4E+02 0.0086 24.8 8.9 31 178-208 3-33 (251)
310 PRK07326 short chain dehydroge 26.7 5E+02 0.011 23.8 11.5 32 177-208 7-38 (237)
311 CHL00194 ycf39 Ycf39; Provisio 26.6 1.7E+02 0.0038 28.9 6.6 32 178-209 2-33 (317)
312 KOG1506 S-adenosylmethionine s 26.5 35 0.00076 33.4 1.4 103 48-186 130-261 (383)
313 cd08289 MDR_yhfp_like Yhfp put 26.4 1.7E+02 0.0038 28.5 6.6 48 177-230 148-195 (326)
314 PRK07856 short chain dehydroge 26.4 5E+02 0.011 24.2 9.5 32 177-208 7-38 (252)
315 TIGR01533 lipo_e_P4 5'-nucleot 26.3 6.2E+02 0.014 24.8 10.8 69 163-233 122-195 (266)
316 PRK12384 sorbitol-6-phosphate 26.3 5.4E+02 0.012 24.0 11.8 31 178-208 4-34 (259)
317 cd08245 CAD Cinnamyl alcohol d 26.2 2.6E+02 0.0057 27.3 7.8 47 178-231 165-211 (330)
318 cd05283 CAD1 Cinnamyl alcohol 26.1 2.4E+02 0.0051 28.0 7.5 47 177-230 171-217 (337)
319 cd08260 Zn_ADH6 Alcohol dehydr 26.0 2.3E+02 0.0051 28.0 7.4 44 178-228 168-211 (345)
320 PRK09291 short chain dehydroge 25.9 4.5E+02 0.0098 24.5 9.1 32 178-209 4-35 (257)
321 PF12831 FAD_oxidored: FAD dep 25.8 78 0.0017 33.2 4.0 29 181-209 3-31 (428)
322 PRK06484 short chain dehydroge 25.6 5.5E+02 0.012 27.2 10.7 80 177-262 6-85 (520)
323 TIGR02817 adh_fam_1 zinc-bindi 25.5 2.5E+02 0.0055 27.5 7.6 47 178-230 151-198 (336)
324 cd01013 isochorismatase Isocho 25.5 3.6E+02 0.0077 25.0 8.1 61 171-231 137-201 (203)
325 PF09094 DUF1925: Domain of un 25.4 54 0.0012 26.0 2.0 20 77-96 55-74 (80)
326 PLN02342 ornithine carbamoyltr 25.4 3E+02 0.0065 28.2 8.0 46 186-232 204-250 (348)
327 PRK05329 anaerobic glycerol-3- 25.1 7.9E+02 0.017 25.8 11.3 28 182-209 7-34 (422)
328 PRK00509 argininosuccinate syn 25.1 8E+02 0.017 25.6 14.8 57 177-233 3-62 (399)
329 PF09837 DUF2064: Uncharacteri 25.0 4.3E+02 0.0093 22.4 8.6 96 193-308 3-99 (122)
330 PRK12747 short chain dehydroge 24.9 5.7E+02 0.012 23.8 12.7 56 177-233 5-60 (252)
331 cd08285 NADP_ADH NADP(H)-depen 24.8 2.6E+02 0.0056 27.9 7.5 47 178-230 169-215 (351)
332 PRK09754 phenylpropionate diox 24.8 3.7E+02 0.0081 27.5 8.9 30 180-209 147-176 (396)
333 PRK10490 sensor protein KdpD; 24.7 9E+02 0.019 28.1 12.7 112 177-305 251-375 (895)
334 PRK12771 putative glutamate sy 24.7 2.7E+02 0.0059 30.2 8.1 53 179-231 139-206 (564)
335 PRK07102 short chain dehydroge 24.5 5.5E+02 0.012 23.7 9.4 56 178-235 3-59 (243)
336 TIGR01292 TRX_reduct thioredox 24.4 2.3E+02 0.0051 27.1 6.9 52 179-230 143-195 (300)
337 TIGR00658 orni_carb_tr ornithi 24.2 3.6E+02 0.0079 26.9 8.3 53 180-233 152-208 (304)
338 cd08278 benzyl_alcohol_DH Benz 24.1 4.7E+02 0.01 26.3 9.4 49 177-231 188-236 (365)
339 PRK06079 enoyl-(acyl carrier p 24.1 6.1E+02 0.013 23.8 10.2 31 178-208 9-41 (252)
340 cd08288 MDR_yhdh Yhdh putative 24.0 2.3E+02 0.005 27.6 6.9 48 177-230 148-195 (324)
341 PRK07825 short chain dehydroge 23.7 6.3E+02 0.014 23.9 11.4 32 177-208 6-37 (273)
342 cd08258 Zn_ADH4 Alcohol dehydr 23.7 3E+02 0.0065 26.9 7.6 46 178-228 167-212 (306)
343 TIGR01289 LPOR light-dependent 23.4 7.2E+02 0.016 24.4 11.1 73 177-252 4-77 (314)
344 cd08259 Zn_ADH5 Alcohol dehydr 23.1 3.3E+02 0.0071 26.5 7.8 46 177-228 164-209 (332)
345 PF01494 FAD_binding_3: FAD bi 23.0 1.1E+02 0.0023 30.2 4.2 29 181-209 5-33 (356)
346 PRK05476 S-adenosyl-L-homocyst 23.0 3E+02 0.0065 29.0 7.6 29 178-206 213-241 (425)
347 PRK00768 nadE NAD synthetase; 22.9 5.6E+02 0.012 25.2 9.0 64 170-233 32-108 (268)
348 PRK07774 short chain dehydroge 22.7 6.1E+02 0.013 23.4 11.4 33 177-209 7-39 (250)
349 PRK06260 threonine synthase; V 22.7 8.6E+02 0.019 25.1 14.5 36 176-211 218-261 (397)
350 cd08299 alcohol_DH_class_I_II_ 22.6 2.7E+02 0.0058 28.3 7.2 44 178-228 193-237 (373)
351 cd08244 MDR_enoyl_red Possible 22.6 2.9E+02 0.0064 26.7 7.3 46 177-228 144-189 (324)
352 PLN02827 Alcohol dehydrogenase 22.5 3.4E+02 0.0074 27.6 8.0 47 179-230 196-242 (378)
353 PRK09422 ethanol-active dehydr 22.4 5.2E+02 0.011 25.3 9.2 48 177-231 164-212 (338)
354 PF02737 3HCDH_N: 3-hydroxyacy 22.3 1.4E+02 0.003 27.2 4.6 28 182-209 4-31 (180)
355 PRK07818 dihydrolipoamide dehy 22.3 2.8E+02 0.006 29.2 7.5 54 177-231 173-232 (466)
356 cd08250 Mgc45594_like Mgc45594 22.2 3.1E+02 0.0067 26.8 7.4 47 177-229 141-187 (329)
357 COG1064 AdhP Zn-dependent alco 22.1 4.4E+02 0.0096 26.9 8.4 54 175-234 165-218 (339)
358 PF00732 GMC_oxred_N: GMC oxid 22.1 68 0.0015 31.2 2.6 36 297-334 1-36 (296)
359 TIGR03385 CoA_CoA_reduc CoA-di 21.9 4.7E+02 0.01 27.0 9.0 32 177-209 138-169 (427)
360 PRK12746 short chain dehydroge 21.8 6.5E+02 0.014 23.4 11.4 72 177-250 7-78 (254)
361 PF00890 FAD_binding_2: FAD bi 21.7 1.1E+02 0.0024 31.5 4.2 28 182-209 4-31 (417)
362 PF13478 XdhC_C: XdhC Rossmann 21.5 1.1E+02 0.0023 26.8 3.4 30 181-210 2-31 (136)
363 PLN02702 L-idonate 5-dehydroge 21.4 3.9E+02 0.0084 26.8 8.1 48 178-231 184-231 (364)
364 PLN02583 cinnamoyl-CoA reducta 21.4 5.8E+02 0.013 24.8 9.1 33 177-209 7-39 (297)
365 PF13686 DrsE_2: DsrE/DsrF/Drs 21.3 1.6E+02 0.0035 26.1 4.6 30 179-208 5-39 (148)
366 KOG2585 Uncharacterized conser 21.2 1.7E+02 0.0037 30.8 5.2 33 179-211 269-304 (453)
367 COG2242 CobL Precorrin-6B meth 21.2 2.2E+02 0.0048 26.4 5.5 49 283-332 20-68 (187)
368 TIGR00696 wecB_tagA_cpsF bacte 21.1 6.4E+02 0.014 23.0 10.6 99 189-307 13-111 (177)
369 PRK09126 hypothetical protein; 21.0 1.1E+02 0.0024 31.1 4.0 28 181-208 7-34 (392)
370 TIGR01064 pyruv_kin pyruvate k 20.8 9.4E+02 0.02 25.7 11.0 44 164-209 362-405 (473)
371 PRK07831 short chain dehydroge 20.6 7.1E+02 0.015 23.3 11.4 31 177-207 18-49 (262)
372 cd08269 Zn_ADH9 Alcohol dehydr 20.6 3.1E+02 0.0066 26.4 6.9 45 177-228 131-176 (312)
373 cd05279 Zn_ADH1 Liver alcohol 20.6 2.9E+02 0.0063 27.8 6.9 45 178-228 186-230 (365)
374 PF02826 2-Hacid_dh_C: D-isome 20.4 2.1E+02 0.0045 25.9 5.3 33 179-211 38-70 (178)
375 PRK06847 hypothetical protein; 20.4 1.4E+02 0.0031 30.1 4.6 28 180-207 7-34 (375)
376 PRK08264 short chain dehydroge 20.4 5.2E+02 0.011 23.8 8.2 33 177-209 7-40 (238)
377 PHA02554 13 neck protein; Prov 20.4 1.3E+02 0.0028 29.9 4.0 41 214-254 8-48 (311)
378 PF05185 PRMT5: PRMT5 arginine 20.0 2.1E+02 0.0046 30.4 5.8 35 298-332 189-224 (448)
No 1
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-89 Score=652.03 Aligned_cols=391 Identities=71% Similarity=1.122 Sum_probs=382.4
Q ss_pred CCCCCCCccCCCCccccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEE
Q 012341 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY 147 (465)
Q Consensus 68 ~~~~~~~~~~~~gG~~~P~~~~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~ 147 (465)
..||.+|+||+|||.||||+||+.+++++.+|.+...|++|+++|+..+++|+||||||+..++|++++ +++||
T Consensus 1 ~~~~~~g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~------gakiy 74 (396)
T COG0133 1 AYPDEKGYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHL------GAKIY 74 (396)
T ss_pred CCCccCCcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhh------CceEE
Confidence 369999999999999999999999999999999999999999999999999999999999999999998 79999
Q ss_pred EeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCC
Q 012341 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (465)
Q Consensus 148 lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA 227 (465)
+||||+|+||+||++.++.+++.|+++|++++|.++++|+||+|.|.+|+++|++|+|||...+.+||..|+.+|+.+||
T Consensus 75 LKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA 154 (396)
T COG0133 75 LKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGA 154 (396)
T ss_pred EehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCc
Q 012341 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307 (465)
Q Consensus 228 ~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~G 307 (465)
+|+.|..++.+++||+.+++++|+.+.+.++|+++|+.+||||+.+|+++|.++|.|+..||.++.|..||+||.|||||
T Consensus 155 ~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGG 234 (396)
T COG0133 155 EVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG 234 (396)
T ss_pred eEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCC
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhHHhhcCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchh
Q 012341 308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS 387 (465)
Q Consensus 308 G~~aGi~~~~~~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~ 387 (465)
+|+.|++..|..++++++||||+.+..+.++.|+++|..|+++++||.++|++|+.+|++.+.+||+.|||||++||++.
T Consensus 235 SNAiG~F~~Fi~d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha 314 (396)
T COG0133 235 SNAIGIFHPFIDDESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHA 314 (396)
T ss_pred cchhhhcccccCCCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 388 FLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 388 ~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
++++..+.+.+.|+|+|+++|++.|.+.|||++..+|++|+|.+.++++++++++.||+.+||+|+||..++.++++
T Consensus 315 ~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~~~~~ivvnlSGRGDKDv~tv~~~l~ 391 (396)
T COG0133 315 YLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLPKDEIIVVNLSGRGDKDVFTVAKLLG 391 (396)
T ss_pred HHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcCCCcEEEEEccCCCcccHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998888889999999999999999999875
No 2
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1.2e-81 Score=642.75 Aligned_cols=406 Identities=89% Similarity=1.380 Sum_probs=377.6
Q ss_pred cCCCCCCCCCCCCCCccCCCCccccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCC
Q 012341 60 KESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRP 139 (465)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~gG~~~P~~~~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~ 139 (465)
.+.||+.+..||.+|+||+|||.||||+||+.++||+++|.+...|++|++|++.++++++|++|||+++++|++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~ 82 (410)
T PLN02618 3 PGSDPTGFQRPDSFGRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERLTEHYKRA 82 (410)
T ss_pred CCCCchhccCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhccc
Confidence 36788888999999999999999999999999999999999999999999999999999999999999999999987211
Q ss_pred CCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhH
Q 012341 140 NGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNV 219 (465)
Q Consensus 140 ~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~ 219 (465)
++++.+||+|+|++|||||||+|+++.+++.+++++++++|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+
T Consensus 83 ~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv 162 (410)
T PLN02618 83 DGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNV 162 (410)
T ss_pred cCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhH
Confidence 12368999999999999999999999999999999988888888899999999999999999999999997777778899
Q ss_pred HHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCE
Q 012341 220 FRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDV 299 (465)
Q Consensus 220 ~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~ 299 (465)
.+|+.|||+|+.++.+..+++|+..+++++|.++.++.+|+++|..++|||+.+++++|.++|.|+.+|++++.+..||+
T Consensus 163 ~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~ 242 (410)
T PLN02618 163 FRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDV 242 (410)
T ss_pred HHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCE
Confidence 99999999999997655688999888888888876778999999999999998999999999999999999998778999
Q ss_pred EEEcCCCchhHHHHhHHhhcCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCC
Q 012341 300 LIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDY 379 (465)
Q Consensus 300 vvvpvG~GG~~aGi~~~~~~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~ 379 (465)
||+|+|+|||++|++.+|+.++.+||||||++++.+....|+.+|..|+++.+|+..+|++|+.+|++..++||++||++
T Consensus 243 VV~~VGgGg~~~Gi~~~f~~~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~ 322 (410)
T PLN02618 243 LVACVGGGSNAMGLFHEFIDDEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDY 322 (410)
T ss_pred EEEEeCchHHHHHHHHHHHhCCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcC
Confidence 99999999999999999987899999999999987776789999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHH
Q 012341 380 PGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTA 459 (465)
Q Consensus 380 ~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v 459 (465)
+++|+.+.++++..+++++.|+|+|+++|+++|+++|||+++++|++|+|++++++++++++++||+++||+|+||++++
T Consensus 323 pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l~~~~~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 323 PGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVVNCSGRGDKDVNTA 402 (410)
T ss_pred CCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhcCCCCEEEEEeCCCCcCCHHHH
Confidence 99999888888888999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHhcC
Q 012341 460 IKYLQV 465 (465)
Q Consensus 460 ~~~~~~ 465 (465)
.+++.+
T Consensus 403 ~~~~~~ 408 (410)
T PLN02618 403 IKYLQV 408 (410)
T ss_pred HHHhcc
Confidence 987753
No 3
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2.1e-81 Score=640.10 Aligned_cols=392 Identities=72% Similarity=1.132 Sum_probs=369.5
Q ss_pred CCCCCCCccCCCCccccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEE
Q 012341 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY 147 (465)
Q Consensus 68 ~~~~~~~~~~~~gG~~~P~~~~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~ 147 (465)
..||.+|+||+|||.||||+||+.++||+++|.+...|++|+++++..+++++|++|||+++++|++++ ++.+||
T Consensus 3 ~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~-----gg~~Iy 77 (397)
T PRK04346 3 TLPDENGYFGEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHL-----GGAKIY 77 (397)
T ss_pred CCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHc-----CCCeEE
Confidence 479999999999999999999999999999999999999999999999999999999999999999987 578999
Q ss_pred EeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCC
Q 012341 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (465)
Q Consensus 148 lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA 227 (465)
+|+|++|||||||+|+++.+++.++++|++++|+++|+||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.+||
T Consensus 78 lK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA 157 (397)
T PRK04346 78 LKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGA 157 (397)
T ss_pred EEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCC
Confidence 99999999999999999999999999999888888999999999999999999999999999766667789999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCc
Q 012341 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307 (465)
Q Consensus 228 ~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~G 307 (465)
+|+.|+.+..+++|+..++.++|.++.++++|+++|+.|+|||+.+|+++|.++|.|+.+|+.++.+..||+||+|+|||
T Consensus 158 ~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgG 237 (397)
T PRK04346 158 EVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGG 237 (397)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCcc
Confidence 99999876568899998999988887677899999999999999999999999999999999888777899999999999
Q ss_pred hhHHHHhHHhhcCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchh
Q 012341 308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS 387 (465)
Q Consensus 308 G~~aGi~~~~~~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~ 387 (465)
||++|++.+|+.+|.+||||||+.++......|+.+|..|+++.+|+..+|++++.+|++.++++|++||+|+++|+.+.
T Consensus 238 g~~~Gi~~~f~~~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~ 317 (397)
T PRK04346 238 SNAIGIFHPFIDDESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHA 317 (397)
T ss_pred HhHHHHHHHHhhCCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHH
Confidence 99999999998889999999999998777678999999999999999999999999999999999999999999999888
Q ss_pred hhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 388 FLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 388 ~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
++.+..+++++.|+|+|+++|+++|+++|||++++++|+|+|++++++++++++++||+++||+|+||++++.++++
T Consensus 318 ~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l~~~~~Vvv~lsGrG~kd~~~~~~~~~ 394 (397)
T PRK04346 318 YLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTLGKDQIIVVNLSGRGDKDVFTVAKLLG 394 (397)
T ss_pred HHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhcCCCCeEEEEeCCCCccCHHHHHHHhc
Confidence 88888889999999999999999999999999999999999999999887778999999999999999999999875
No 4
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.1e-79 Score=626.23 Aligned_cols=395 Identities=61% Similarity=0.981 Sum_probs=368.5
Q ss_pred CCCCCCCCCCccCCCCccccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCC
Q 012341 65 APWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGP 144 (465)
Q Consensus 65 ~~~~~~~~~~~~~~~gG~~~P~~~~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~ 144 (465)
+....||.+|+||+|||.|+||+||+.++||+++|.+...|++|++|++..+++++|++|||+++++|++.+ ++.
T Consensus 4 ~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~-----Gg~ 78 (402)
T PRK13028 4 YLKSMPDADGFFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEEL-----GGA 78 (402)
T ss_pred ccccCCCCCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhc-----CCC
Confidence 445679999999999999999999999999999999999999999999999999999999999999999987 478
Q ss_pred eEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHh
Q 012341 145 HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL 224 (465)
Q Consensus 145 ~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~ 224 (465)
+||+|+|++|||||||+|+++.+++.+++.+++++|+++|+||||+|+|++|+++|++|+||||+.++.++..|+.+|+.
T Consensus 79 ~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~ 158 (402)
T PRK13028 79 QIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKL 158 (402)
T ss_pred eEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHH
Confidence 99999999999999999999999999999998888888999999999999999999999999999777767789999999
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcC
Q 012341 225 LGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACV 304 (465)
Q Consensus 225 ~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpv 304 (465)
+||+|+.++.+..+++++.++++++|.++.++.+|+++|..++|||+.+++++|.++|.|+.+|+.++.+..||+||+|+
T Consensus 159 ~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~V 238 (402)
T PRK13028 159 LGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACV 238 (402)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEc
Confidence 99999999865568999998888888877666789999999999999889899999999999999888776799999999
Q ss_pred CCchhHHHHhHHhhcCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCC
Q 012341 305 GGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP 384 (465)
Q Consensus 305 G~GG~~aGi~~~~~~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~ 384 (465)
|+|||++|++.+|+.++.+||||||+.+..+..+.|+.+|..|+++.+|+..+|++++.+|++...+||++||+++++|+
T Consensus 239 GgGg~~~Gi~~~f~~~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp 318 (402)
T PRK13028 239 GGGSNAIGLFSAFLDDESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGP 318 (402)
T ss_pred CchHHHHHHHHHHHhCCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCH
Confidence 99999999999998779999999999996665677889999999999999999999999999988999999999999999
Q ss_pred chhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 385 EHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 385 ~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
.+..++...+++++.|+|+|+++|+++|+++|||++++++|+++|+++++++++.++++||+++||+|+||++++.++++
T Consensus 319 ~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l~~~~~VVv~lsG~G~kd~~~~~~~~~ 398 (402)
T PRK13028 319 EHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPELSKDETILVNLSGRGDKDIDYVAEMLG 398 (402)
T ss_pred HHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhcCCCCeEEEEECCCCccCHHHHHHHhC
Confidence 88888888889999999999999999999999999999999999999999888778999999999999999999999876
No 5
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-78 Score=577.89 Aligned_cols=449 Identities=59% Similarity=0.912 Sum_probs=421.6
Q ss_pred cccCCcccccccccccceecCCCCCcccccccccCCCc---CCCceeeeccCCCcccccccCCCCCCCCCCCCCCccCCC
Q 012341 3 VATGSSSCCKLAKPCAFTTSNSSQSPFKLKKFTASPAK---STSIRCTIARDPVVPMEAKKESDPAPWQRPDVFGRFGRF 79 (465)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (465)
|+-+.++|-+ -|-.++.+.+....++...++.+.+ +.+..|+++..++..| +.+.|...++.| .+||+|
T Consensus 8 v~~~v~~~~~---~s~lt~~rk~~~~~k~~~~~slr~~~~~~~t~~~sva~~p~~~~--~l~~d~~~~~~P---~r~gkf 79 (477)
T KOG1395|consen 8 VSPQVGDCQG---FSDLTLKRKSNQATKYSNGSSLRVKAALRFTHNKSVAEIPPQWY--NLVADLSVKPPP---PRFGKF 79 (477)
T ss_pred cccCCccccc---cCCcccccChhhhcccccCCccccccccccccCceeeeCCHHHH--hccCchhhcCCC---cccccc
Confidence 5556666654 4667777777777777766666555 4688999999999999 677888888888 899999
Q ss_pred CccccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCc
Q 012341 80 GGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAH 159 (465)
Q Consensus 80 gG~~~P~~~~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSf 159 (465)
||+|+||.|+..|.|++..|-....|++||+++..+.+ ++||||||++.++|.++++ .+++||+|+|++||||||
T Consensus 80 gg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~-y~gRpspL~~AkRLte~~q----~ga~IylKrEdlnh~GsH 154 (477)
T KOG1395|consen 80 GGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYK-YLGRPSPLIRAKRLTEHCQ----TGARIYLKREDLNHTGSH 154 (477)
T ss_pred CCccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HcCCCchhHHHHHHHHHhC----CCCEEEEEecCCCccccC
Confidence 99999999999999999999999999999999999877 8999999999999999993 389999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCH
Q 012341 160 KINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239 (465)
Q Consensus 160 K~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~ 239 (465)
|++.|+.+++.++++|++++|.++++|+||+|+|.+|+++|++|+|+|...+..++..|+.+||.+||+|+.+..+..++
T Consensus 155 KiNnav~QallakrlGkknviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tL 234 (477)
T KOG1395|consen 155 KINNAVAQALLAKRLGKKNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTL 234 (477)
T ss_pred CcccHHHHHHHHHHhcccceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhhc
Q 012341 240 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN 319 (465)
Q Consensus 240 ~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~~ 319 (465)
+|+..++.+.|+++.+.++|+++|..++|||+.+++.+|.++|.|+..|..|..+..||+||.|+|||+|.+|++.-|..
T Consensus 235 rda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~ 314 (477)
T KOG1395|consen 235 RDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR 314 (477)
T ss_pred hcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEE
Q 012341 320 DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYN 399 (465)
Q Consensus 320 ~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~ 399 (465)
+..++.|||+..+.+.+..+|..+|..|+++.+||.++|++|+.+|++..+++|..||+|||+||++.++++..+.+++.
T Consensus 315 dk~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~is 394 (477)
T KOG1395|consen 315 DKSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFIS 394 (477)
T ss_pred cchhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEe
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 400 VTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 400 Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
|+|.|.++++++|++.|||++.+++.+|+++..+++++++++++||+.+||+|+||+..+.++|+
T Consensus 395 itd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l~~~k~ivi~~sGrGdkDvqS~~kyL~ 459 (477)
T KOG1395|consen 395 ITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTLPEDKVIVINISGRGDKDVQSVAKYLP 459 (477)
T ss_pred cChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhccccCCCcEEEEEecCCCCchHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999886
No 6
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.9e-74 Score=616.80 Aligned_cols=397 Identities=55% Similarity=0.903 Sum_probs=356.3
Q ss_pred CCCCCCCccCCCCccccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEE
Q 012341 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY 147 (465)
Q Consensus 68 ~~~~~~~~~~~~gG~~~P~~~~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~ 147 (465)
.+.-.+||||+|||.||||++|+.+++++++|.+...|++|++|++..+++|+|+||||+++++|++.+.+..+++.+||
T Consensus 271 ~~~~~~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~Iy 350 (695)
T PRK13802 271 LSEHQGPYWGQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVF 350 (695)
T ss_pred cccCCCCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhcCCCceEE
Confidence 34455899999999999999999999999999999999999999999999999999999999998753200001247999
Q ss_pred EeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCC
Q 012341 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (465)
Q Consensus 148 lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA 227 (465)
+|+|++|||||||+|++++++..+++.|+.++|+++|+||||+|+|++|+++|++|+||||+.+..++..|+.+|+.|||
T Consensus 351 lK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGA 430 (695)
T PRK13802 351 LKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGA 430 (695)
T ss_pred EEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCC
Confidence 99999999999999999999999999999889999999999999999999999999999999765567789999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhC-CCCCEEEEcCCC
Q 012341 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG-GKPDVLIACVGG 306 (465)
Q Consensus 228 ~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g-~~~D~vvvpvG~ 306 (465)
+|+.++.+..+++++..+++++|.++.++.+|+++|+.|+|||+.+++++|.++|.|+..|+.+..| ..||+||+|+||
T Consensus 431 eVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGg 510 (695)
T PRK13802 431 EVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGG 510 (695)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCc
Confidence 9999986545788888788888887766678999999999999888999999999999988855434 269999999999
Q ss_pred chhHHHHhHHhhcCCCcEEEEEecCCCCCCchhhhhhhc--cCCeEeeccceeecccccCCCccCcccccccCCCCCCCC
Q 012341 307 GSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLS--KGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP 384 (465)
Q Consensus 307 GG~~aGi~~~~~~~p~~rvigVe~~~~~~~~~~~~~sl~--~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~ 384 (465)
|||++|++.+|+.+|.+||||||+.++......|..++. .|.++.+||.++|+.++.+|++...++|+.||+||++||
T Consensus 511 Gg~~~Gi~~~f~~~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp 590 (695)
T PRK13802 511 GSNAIGVMNAFLDDERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGP 590 (695)
T ss_pred hHHHHHHHHHHHhCCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCc
Confidence 999999999998789999999999998765556666665 488999999999999999999999999999999999999
Q ss_pred chhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCC----CCEEEEEeCCCCCCCHHHHH
Q 012341 385 EHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLAD----GTKVVVNFSGRGDKDVQTAI 460 (465)
Q Consensus 385 ~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~----~~~VVvv~tG~g~k~~~~v~ 460 (465)
++.+++...+.+.+.|+|+|+++++++|++.|||+++++||+|+|+++++++++++ +++||+++||+|+||++++.
T Consensus 591 ~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~ 670 (695)
T PRK13802 591 EHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTAG 670 (695)
T ss_pred hhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHHH
Confidence 99999988877889999999999999999999999999999999999999886643 56899999999999999999
Q ss_pred HHhc
Q 012341 461 KYLQ 464 (465)
Q Consensus 461 ~~~~ 464 (465)
++++
T Consensus 671 ~~~~ 674 (695)
T PRK13802 671 KWFG 674 (695)
T ss_pred HHhC
Confidence 8775
No 7
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.6e-73 Score=613.76 Aligned_cols=391 Identities=61% Similarity=1.008 Sum_probs=362.7
Q ss_pred CCCCCCCccCCCCccccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEE
Q 012341 68 QRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIY 147 (465)
Q Consensus 68 ~~~~~~~~~~~~gG~~~P~~~~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~ 147 (465)
..||.+||||+|||.|+||++|+.++||+++|.+...|++|+++|+..+++|+|++|||+++++|++.+ |.+||
T Consensus 216 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grpTPL~~~~~Ls~~~------G~~Iy 289 (610)
T PRK13803 216 YLSDPAGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTEAKRLSDIY------GARIY 289 (610)
T ss_pred hCCCCCCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCcceeHHHHHHhh------CCEEE
Confidence 578999999999999999999999999999999999999999999999999999999999999999886 78999
Q ss_pred EeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCC
Q 012341 148 LKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (465)
Q Consensus 148 lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA 227 (465)
+|+|++|||||||+|+++.+++.+++.+++++|+++|+||||+|+|++|+++|++|+||||+.+..++..|+.+|+.+||
T Consensus 290 lK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA 369 (610)
T PRK13803 290 LKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGA 369 (610)
T ss_pred EEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCC
Confidence 99999999999999999999999999998888888999999999999999999999999999766667789999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCc
Q 012341 228 EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307 (465)
Q Consensus 228 ~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~G 307 (465)
+|+.++.+..+++++..++.++|.++.++.+|++++..++|||+.+++.+|.++|.|+.+|+.++.+..||+||+|+|||
T Consensus 370 ~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgG 449 (610)
T PRK13803 370 NVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGG 449 (610)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcC
Confidence 99999876567889888888888666666789889988999999888889999999999999777776799999999999
Q ss_pred hhHHHHhHHhhcCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchh
Q 012341 308 SNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS 387 (465)
Q Consensus 308 G~~aGi~~~~~~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~ 387 (465)
||++|++.+|+.+|.+|||||||.++.+....|+.+|..|.++.+|+..++++++.+|++..++||++||+++++|+.+.
T Consensus 450 g~~~Gi~~~f~~~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~ 529 (610)
T PRK13803 450 SNAIGIFYHFLDDPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHA 529 (610)
T ss_pred HhHHHHHHHHhhCCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHH
Confidence 99999999998889999999999998766667899999999999999999999999999999999999999999998876
Q ss_pred hhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 388 FLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 388 ~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
.+.+..+++++.|+|+|+++|+++|++++||+++++||+|+|+++++++++.++++||+++||+|+||++++.+++.
T Consensus 530 ~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~~~~~~Vvv~lsG~G~kd~~~~~~~~~ 606 (610)
T PRK13803 530 NLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKFKKKDIVIVNLSGRGDKDIPTLKEYFE 606 (610)
T ss_pred HHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhcCCCCeEEEEeCCCCcCCHHHHHHHHh
Confidence 67667778899999999999999999999999999999999999998877777899999999999999999988764
No 8
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.6e-68 Score=548.16 Aligned_cols=385 Identities=68% Similarity=1.072 Sum_probs=339.2
Q ss_pred CccCCCCccccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCC
Q 012341 74 GRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDL 153 (465)
Q Consensus 74 ~~~~~~gG~~~P~~~~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~ 153 (465)
|+||+|||.|+||+++..++++.+.|.+.+.|++|+++++.++.++++++|||+++++|++.+ ++.+||+|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~-----g~~~iy~K~E~~ 75 (385)
T TIGR00263 1 GYFGDFGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEAL-----GGAKIYLKREDL 75 (385)
T ss_pred CCCCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHh-----CCCeEEEEeCCC
Confidence 689999999999999999999999999999999999999999999998899999999999887 348999999999
Q ss_pred CCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEc
Q 012341 154 NHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (465)
Q Consensus 154 ~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~ 233 (465)
|||||||+|++++++..+++.+++.+|+++||||||+|+|++|+++|++|+||||+.+.+++..|+.+|+.+||+|+.++
T Consensus 76 nptGS~K~R~a~~~~~~a~~~g~~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~ 155 (385)
T TIGR00263 76 NHTGAHKINNALGQALLAKRMGKKRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVT 155 (385)
T ss_pred CCCccchHHHHHHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEEC
Confidence 99999999999999999888888777778999999999999999999999999998644434468889999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH
Q 012341 234 SGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGL 313 (465)
Q Consensus 234 ~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi 313 (465)
.+.+.+++++.++.+.+.++.++.+|+.+++.|+|||+.++..++.++|.|+.+|+.++.+..||+||+|+|+||+++|+
T Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv 235 (385)
T TIGR00263 156 SGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGI 235 (385)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHH
Confidence 54455777766676666665555678888988889997777788999999999887654444689999999999999999
Q ss_pred hHHhhcCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccC
Q 012341 314 FHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEG 393 (465)
Q Consensus 314 ~~~~~~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~ 393 (465)
+.++...|++||||||++++..+.+.+..++..|.+...++...+...+..+++....||++|++++++++....+....
T Consensus 236 ~~~~~~~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~ 315 (385)
T TIGR00263 236 FYAFIDDPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETG 315 (385)
T ss_pred HHHHhhCCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcC
Confidence 98887779999999999998665566788899998887777777877777777778899999999988887666566667
Q ss_pred CceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 394 RAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 394 ~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
.++++.|+|+|+++++++|++++||+++|++|++++++++++++++++++||+++||+|++|++++.+.+
T Consensus 316 ~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l~~~~~Vv~i~~g~G~~d~~~~~~~~ 385 (385)
T TIGR00263 316 RATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTLPKDQIVVVNLSGRGDKDIFTIAKYL 385 (385)
T ss_pred CeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCCHHHHHhhC
Confidence 7899999999999999999999999999999999999999887777899999999999999999998764
No 9
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-58 Score=452.48 Aligned_cols=319 Identities=27% Similarity=0.306 Sum_probs=272.8
Q ss_pred chhHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHH
Q 012341 87 TLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVG 166 (465)
Q Consensus 87 ~~~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~ 166 (465)
.++.++.+|..|+. ++++++ ++|||++++.|++++ +.+||+|+|++||+||||.|||++
T Consensus 4 ~~~~~~~~i~~A~~--------------ri~~~~-~~TPL~~s~~Ls~~~------g~~v~lK~E~lQ~~gSFK~RGA~n 62 (347)
T COG1171 4 LLPVSLADILAAAA--------------RLKGVV-NPTPLQRSPSLSERL------GAEIYLKRENLQPVGSFKIRGAYN 62 (347)
T ss_pred cccccHHHHHHHHH--------------HHhCcc-cCCCcccchhhHHhh------CceEEEeeccCcccccchhhhHHH
Confidence 34567899999887 589988 699999999999987 899999999999999999999999
Q ss_pred HHHHHHHc-CCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHH
Q 012341 167 QALLAKRL-GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSE 245 (465)
Q Consensus 167 ~~~~a~~~-g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~ 245 (465)
.+..+.++ ++...||++|+||||+++|++|+++|++++||||.++ ++.|++.++.|||||++++. +|+|+...
T Consensus 63 ~i~~Ls~e~~~~~gViaaSaGNHaQGvA~aa~~lGi~a~IvMP~~t---p~~Kv~a~r~~GaeVil~g~---~~dda~~~ 136 (347)
T COG1171 63 KLSSLSEEEERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETT---PKIKVDATRGYGAEVILHGD---NFDDAYAA 136 (347)
T ss_pred HHHhcChhhhhcCceEEecCCcHHHHHHHHHHHhCCCEEEEecCCC---cHHHHHHHHhcCCEEEEECC---CHHHHHHH
Confidence 99887633 5667799999999999999999999999999999988 57799999999999999874 67888766
Q ss_pred HHHHHHHccCCceEEeccCCCCCCch-hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCc
Q 012341 246 AIRDWVTNVETTHYILGSVAGPHPYP-MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDV 323 (465)
Q Consensus 246 a~~~~~~~~~~~~y~~~s~~~~~p~~-~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~ 323 (465)
+.+. . +..+..|+ |||+ .+++.||+|++.|+.+|+ +..||+||||+|+||+++|++.+++ ..|.+
T Consensus 137 a~~~-a-~~~G~~~i-------~pfD~p~viAGQGTi~lEileq~----~~~~d~v~vpvGGGGLisGia~~~k~~~p~~ 203 (347)
T COG1171 137 AEEL-A-EEEGLTFV-------PPFDDPDVIAGQGTIALEILEQL----PDLPDAVFVPVGGGGLISGIATALKALSPEI 203 (347)
T ss_pred HHHH-H-HHcCCEEe-------CCCCCcceeecccHHHHHHHHhc----cccCCEEEEecCccHHHHHHHHHHHHhCCCC
Confidence 6543 3 33344553 8885 467799999999986665 3336999999999999999999998 78999
Q ss_pred EEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHH
Q 012341 324 RLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDD 403 (465)
Q Consensus 324 rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~ 403 (465)
|||||||+++ +.+++||..|+.... ...+.+|+||+.+..+|.....+.+.++|+++.|+|+
T Consensus 204 ~vIGVEp~~a----~~~~~Sl~~G~~~~~--------------~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ 265 (347)
T COG1171 204 KVIGVEPEGA----PSMYASLKAGKIVVV--------------LPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDED 265 (347)
T ss_pred eEEEEeeCCC----hHHHHHHHcCCceee--------------cCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHH
Confidence 9999999998 689999999954331 2347899999998888877666777788999999999
Q ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 404 EALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 404 e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
|+.++|+.++++++++.||++|.++|++++...+..++++|++|+|| ||.|+..+.+++.
T Consensus 266 ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~~~g~~v~~ilSG-gN~d~~~~~~v~~ 325 (347)
T COG1171 266 EICAAMRDLFERTKIIAEPAGALALAALLAGKIEPLQGKTVVVILSG-GNIDFERLAEVLE 325 (347)
T ss_pred HHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhhcCCCeEEEEecC-CCCCHHHHHHHHh
Confidence 99999999999999999999999999999877652467779999998 7999999887653
No 10
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.1e-56 Score=458.44 Aligned_cols=364 Identities=71% Similarity=1.093 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHH
Q 012341 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (465)
Q Consensus 91 ~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~ 170 (465)
.+++|++.+.+..-|++|++.++.+++++++++|||+++++|++.+ ++.+||+|+|++|||||||+|++++++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~-----g~~~l~~K~E~~nptgS~K~R~a~~~~~~ 76 (365)
T cd06446 2 ALEELEQEFSKERYDPDFPEELRELYKDYVGRPTPLYRAKRLSEYL-----GGAKIYLKREDLNHTGAHKINNALGQALL 76 (365)
T ss_pred hHHHHHHHHHHhhcCcccHHHHHHHhhccCCCCCCceehHHHHHhh-----CCceEEEEeccCCCccchhHHHHHHHHHH
Confidence 5889999999888999999999999999987899999999999876 47899999999999999999999999998
Q ss_pred HHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.+.+.+.+|+++||||||+|+|++|+.+|++|+||||+.++.+...|+.+|+.+||+|+.++.....++++..++.+.+
T Consensus 77 a~~~g~~~vv~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~ 156 (365)
T cd06446 77 AKRMGKKRVIAETGAGQHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDW 156 (365)
T ss_pred HHHcCCCeEEEecCchHHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 88888887776689999999999999999999999999865433446888899999999999854334566655555554
Q ss_pred HHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhhcCCCcEEEEEec
Q 012341 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEA 330 (465)
Q Consensus 251 ~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~~~p~~rvigVe~ 330 (465)
.++.++..|+++++.++|||+..++.++.++|.|+..|+.+..+..||+||+|+|+||+++|++.+++..+++|||||||
T Consensus 157 ~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~~~~~~vigVep 236 (365)
T cd06446 157 VTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFINDKDVKLIGVEA 236 (365)
T ss_pred HhccCCceEecccccCCCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHhCCCceEEEEcC
Confidence 44433456777777667888777788999999999888854433469999999999999999999887667999999999
Q ss_pred CCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHH
Q 012341 331 AGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFK 410 (465)
Q Consensus 331 ~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~ 410 (465)
.++......+..++..|....+++...+......+....+.|+++|+.++.+++....+.....++++.|+|+|++++++
T Consensus 237 ~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r 316 (365)
T cd06446 237 GGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFK 316 (365)
T ss_pred CCCccccccceeeccCCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHH
Confidence 99854322333567777765544333332221113345678999999877777655445566788999999999999999
Q ss_pred HHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHH
Q 012341 411 RSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTA 459 (465)
Q Consensus 411 ~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v 459 (465)
+|++++||+++|++|+++|+++++.++.+++++||+|+||+|+||++++
T Consensus 317 ~la~~eGi~~epssgaalAa~~~~~~~~~~~~~Vv~i~~g~G~k~~~~~ 365 (365)
T cd06446 317 LLARTEGIIPALESSHAIAYAIKLAKKLGKEKVIVVNLSGRGDKDLQTV 365 (365)
T ss_pred HHHHhcCceeCccchHHHHHHHHHHHhcCCCCeEEEEeCCCCccccccC
Confidence 9999999999999999999999988776678899999999999998763
No 11
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=8.9e-54 Score=440.61 Aligned_cols=313 Identities=24% Similarity=0.311 Sum_probs=257.7
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHH
Q 012341 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (465)
Q Consensus 90 ~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~ 169 (465)
.++++|.+|+. ++.+++ .+|||+++++|++.+ +.+||+|+|++|||||||+|++.+.+.
T Consensus 2 ~~~~~i~~a~~--------------~i~~~i-~~TPl~~~~~Ls~~~------g~~iylK~E~lqptGSfK~RgA~n~i~ 60 (403)
T PRK08526 2 LELNKIYQAKQ--------------RISGFV-NKTPFAYAPFLSKIS------GAEVYLKKENLQITGAYKIRGAYNKIA 60 (403)
T ss_pred CCHHHHHHHHH--------------HHhCcC-CCCCccchHHHHHHh------CCeEEEEecCCCCCCCCHHHHHHHHHH
Confidence 36889998887 588999 499999999999886 789999999999999999999999998
Q ss_pred HHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHH
Q 012341 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (465)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~ 249 (465)
.+.+.++.+.||++|+||||+++|++|+++|++|+||||+.. +..|+.+++.|||+|+.++. +++++...+.+
T Consensus 61 ~l~~~~~~~gVV~aSaGNhg~avA~aa~~~Gi~~~IvmP~~~---p~~k~~~~r~~GA~Vv~~g~---~~~~a~~~a~~- 133 (403)
T PRK08526 61 NLSEEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEAT---PLLKVSGTKALGAEVILKGD---NYDEAYAFALE- 133 (403)
T ss_pred hccHhhcCCEEEEECccHHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHHH-
Confidence 877655556788999999999999999999999999999976 45688889999999999873 57887766654
Q ss_pred HHHccCCceEEeccCCCCCCch-hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEE
Q 012341 250 WVTNVETTHYILGSVAGPHPYP-MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (465)
Q Consensus 250 ~~~~~~~~~y~~~s~~~~~p~~-~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvig 327 (465)
+.++ .+..| + |||+ ..+..+|.++|.|+.+| ++ .+|+||+|+|+||+++|++.+++ .+|.+||||
T Consensus 134 ~a~~-~g~~~-v------~p~~~~~~i~G~gtia~EI~eq----~~-~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvig 200 (403)
T PRK08526 134 YAKE-NNLTF-I------HPFEDEEVMAGQGTIALEMLDE----IS-DLDMVVVPVGGGGLISGIASAAKQINPNIKIIG 200 (403)
T ss_pred HHHh-cCCEe-e------CCCCCHHHHhhhHHHHHHHHHh----cC-CCCEEEEecChHHHHHHHHHHHHHhCCCCEEEE
Confidence 3333 33334 3 5553 24568888888887655 43 69999999999999999999998 789999999
Q ss_pred EecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHH
Q 012341 328 VEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALE 407 (465)
Q Consensus 328 Ve~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~ 407 (465)
|||++++ .+..++..|++.. .....++++|+..+.+++.........+|+++.|+|+|+.+
T Consensus 201 Vep~~~~----~~~~s~~~g~~~~---------------~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v~V~d~ei~~ 261 (403)
T PRK08526 201 VGAKGAP----AMYESFHAKKIIN---------------SKSVRTIADGIAVRDASPINLAIILECVDDFVQVDDEEIAN 261 (403)
T ss_pred EEECCCC----hHHHHHHcCCccc---------------CCCCCceeccccCCCCCHHHHHHHHHhCCEEEEECHHHHHH
Confidence 9999984 4667777776542 23467999999876666543333345679999999999999
Q ss_pred HHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 408 AFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 408 a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
|+++|++++|+++||++|+++|++++....+.++++||+++|| ||.|++.+.+++
T Consensus 262 A~~~l~~~~gi~ve~aga~~lAall~~~~~~~~~~~Vv~ilsG-Gnid~~~~~~i~ 316 (403)
T PRK08526 262 AILFLLEKQKIVVEGAGAASVAALLHQKIDLKKGKKIGVVLSG-GNIDVQMLNIII 316 (403)
T ss_pred HHHHHHHhcCcEeeHHHHHHHHHHHhCccccccCCeEEEEECC-CCCCHHHHHHHH
Confidence 9999999999999999999999998654445568899999999 799999998865
No 12
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=2e-52 Score=439.94 Aligned_cols=307 Identities=25% Similarity=0.271 Sum_probs=253.2
Q ss_pred HHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHH
Q 012341 111 ELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGV 190 (465)
Q Consensus 111 ~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~ 190 (465)
.|..+|.+.+ .+|||+++++|++.+ |.+||+|+|++|||||||+|+|++.+..+.+..+.+.||++|+||||+
T Consensus 26 ~~~~~i~~~v-~~TPL~~~~~Ls~~~------g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~aSaGNha~ 98 (521)
T PRK12483 26 ILAARVYDVA-RETPLQRAPNLSARL------GNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHAQ 98 (521)
T ss_pred HHHHHHhhhc-CCCCeeEchhhhHhh------CCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEECCCHHHH
Confidence 5667788988 599999999999987 789999999999999999999999998766444444688999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCc
Q 012341 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (465)
Q Consensus 191 AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (465)
++|++|+.+|++|+||||+.. +..|+.+++.|||+|+.++. +++++...+.+. .++ .+..| + |||
T Consensus 99 gvA~aA~~lGi~~~IvmP~~t---p~~Kv~~~r~~GAeVil~g~---~~d~a~~~A~~l-a~e-~g~~~-v------~pf 163 (521)
T PRK12483 99 GVALAAARLGVKAVIVMPRTT---PQLKVDGVRAHGGEVVLHGE---SFPDALAHALKL-AEE-EGLTF-V------PPF 163 (521)
T ss_pred HHHHHHHHhCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHHHHH-HHh-cCCee-e------CCC
Confidence 999999999999999999987 45688999999999999973 678887666543 332 23334 3 555
Q ss_pred h-hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCC
Q 012341 271 P-MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGE 348 (465)
Q Consensus 271 ~-~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~ 348 (465)
+ ..++.||+++|.|+.+|+ +..+|+||+|+||||+++|++.+++ .+|++|||||||++++ .+..++..|+
T Consensus 164 dd~~viaGqgTig~EI~eQ~----~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~----~~~~sl~~g~ 235 (521)
T PRK12483 164 DDPDVIAGQGTVAMEILRQH----PGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSN----CLQAALAAGE 235 (521)
T ss_pred CChHHHHHHHHHHHHHHHHh----CCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCc----hhhHHHhcCC
Confidence 3 345588888888876554 4359999999999999999999988 7899999999999984 5677888887
Q ss_pred eEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHH
Q 012341 349 VGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL 428 (465)
Q Consensus 349 ~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~al 428 (465)
+.. .....++++|+....+|.....+....+|+++.|+|+|+.++++.|++++|+++||++|+++
T Consensus 236 ~~~---------------~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaal 300 (521)
T PRK12483 236 RVV---------------LGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAV 300 (521)
T ss_pred ccc---------------CCCCCceeceeccCCCCHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 643 23467899999876676654334456789999999999999999999999999999999999
Q ss_pred HHHHHhcccCC-CCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 429 AYLEKLCPTLA-DGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 429 Aa~~~l~~~~~-~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
|+++++.++.. ++++||+|+|| ||.|++.+.+++
T Consensus 301 Aal~~~~~~~~~~g~~VV~IlsG-gNid~~~l~~i~ 335 (521)
T PRK12483 301 AGIKKYAEREGIEGQTLVAIDSG-ANVNFDRLRHVA 335 (521)
T ss_pred HHHHHHHHhcCCCCCEEEEEeCC-CCCCHHHHHHHH
Confidence 99998764321 68899999998 799999988765
No 13
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-53 Score=390.03 Aligned_cols=312 Identities=21% Similarity=0.301 Sum_probs=260.3
Q ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHH
Q 012341 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (465)
Q Consensus 89 ~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~ 168 (465)
.++++|+++|+. +|++++ +.||++.++.|.+.. |.++|+|+|++|.|||||.|||+|.+
T Consensus 6 ~~t~~dv~~A~~--------------rik~~i-hkTpVlTS~~ln~~~------g~~vfFKcE~fQKtGaFKfRGAlNav 64 (323)
T KOG1251|consen 6 KITYEDVRAAHQ--------------RIKPFI-HKTPVLTSENLNEKV------GRHVFFKCENFQKTGAFKFRGALNAV 64 (323)
T ss_pred cCCHHHHHHHHH--------------HHHhhh-ccCceechhhHHHHh------hhheEeehhhhhhccceehhhhHHHH
Confidence 346899999997 699999 689999999999987 88999999999999999999999999
Q ss_pred HHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHH
Q 012341 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (465)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~ 248 (465)
..+..+++.+.|++.||||||+|+|++|+.+|++++||||+++ +..|+..++.|||+|+++++.. +.++...+
T Consensus 65 ~~l~~ek~~kgvithSSGNHaqAlalaAk~~giPa~IVvP~~A---P~~Kv~a~~~Yga~ii~~e~~~----~sRE~va~ 137 (323)
T KOG1251|consen 65 SSLKAEKRAKGVITHSSGNHAQALALAAKILGIPATIVVPKDA---PICKVAATRGYGANIIFCEPTV----ESRESVAK 137 (323)
T ss_pred HHhhHhhhcCceEeecCCcHHHHHHHHHHhcCCCeEEEecCCC---hHHHHHHHHhcCceEEEecCcc----chHHHHHH
Confidence 9888666666789999999999999999999999999999998 5789999999999999998642 22333334
Q ss_pred HHHHccCCceEEeccCCCCCCchh-HHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEE
Q 012341 249 DWVTNVETTHYILGSVAGPHPYPM-MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (465)
Q Consensus 249 ~~~~~~~~~~y~~~s~~~~~p~~~-~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvi 326 (465)
+..++ ...|+ +|||+. -++.||+|++.|+ +||.+ ..|++|||+||||+++|++.+.+ ..|+++|+
T Consensus 138 ~ltee--~g~~~------i~Py~~p~vIaGqgTiA~El----leqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy 204 (323)
T KOG1251|consen 138 DLTEE--TGYYL------IHPYNHPSVIAGQGTIALEL----LEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVY 204 (323)
T ss_pred HHHHh--cCcEE------eCCCCCcceeeccchHHHHH----HHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEE
Confidence 43333 23455 488863 2446777776665 55665 79999999999999999998877 78999999
Q ss_pred EEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHH
Q 012341 327 GVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEAL 406 (465)
Q Consensus 327 gVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~ 406 (465)
+|||++. ++-++++..|.... +.++.||+||.....+|+..+-+.+..+|++++|+|+|+.
T Consensus 205 ~veP~~a----~d~~qsf~~g~I~~---------------l~tp~TIADG~r~~~lG~~t~pIir~~vddi~Tv~e~Ei~ 265 (323)
T KOG1251|consen 205 AVEPEAA----DDGQQSFLKGKIVH---------------LDTPKTIADGVRTSHLGPLTWPIIRDLVDDILTVSEDEIK 265 (323)
T ss_pred EecCccc----chHHHHHhcCCeEe---------------cCCchhhhhhhhhccccccchHHHHHHhhhheeecHHHHH
Confidence 9999987 56788888888764 4578999999998888986444444458999999999999
Q ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHH
Q 012341 407 EAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKY 462 (465)
Q Consensus 407 ~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~ 462 (465)
++++.+|++..+++||+++.++|+++....++ ..+++.+|+|| ||.|+..+..+
T Consensus 266 ~~lk~~~ermK~~vEPTa~lgfAavl~~k~~~-~~K~igIiLsG-GNVD~~~~~s~ 319 (323)
T KOG1251|consen 266 EALKLIWERMKVVVEPTAALGFAAVLSHKFAL-NIKRIGIILSG-GNVDLNSWASF 319 (323)
T ss_pred HHHHHHHHHHheeeccchhHHHHHHHhhhHHh-ccCceEEEEeC-Ccccccchhhe
Confidence 99999999999999999999999988654443 47899999998 79998875543
No 14
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4e-52 Score=432.00 Aligned_cols=316 Identities=23% Similarity=0.310 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHH
Q 012341 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (465)
Q Consensus 90 ~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~ 169 (465)
.++++|.+|+. ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|+|.+++.
T Consensus 7 ~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~ls~~~------g~~l~~K~E~~~ptGSfK~RgA~~~i~ 65 (420)
T PRK08639 7 VSAKDIDKAAK--------------RLKDVVP-ETPLQRNDYLSEKY------GANVYLKREDLQPVRSYKLRGAYNAIS 65 (420)
T ss_pred CCHHHHHHHHH--------------HHhCcCc-CCCccchHHHHHHh------CCEEEEEecCCCCCCCcHHHHHHHHHH
Confidence 36899999987 5888884 99999999999876 789999999999999999999999998
Q ss_pred HHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHH
Q 012341 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (465)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~ 249 (465)
.+.+....++|+++|+||||+++|++|+++|++|+||||+.. +..|+.+++.|||+|+.+.....+++++.+.+.+.
T Consensus 66 ~l~~~~~~~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~---~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~ 142 (420)
T PRK08639 66 QLSDEELAAGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTT---PQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEY 142 (420)
T ss_pred hCCHHhhCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---hHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHH
Confidence 764433345789999999999999999999999999999976 45688999999997543321114678877666543
Q ss_pred HHHccCCceEEeccCCCCCCch-hHHhhHHHHHHHHHHHHHHHHhCCC--CCEEEEcCCCchhHHHHhHHhh-cCCCcEE
Q 012341 250 WVTNVETTHYILGSVAGPHPYP-MMVRDFHAVIGKETRRQALEKWGGK--PDVLIACVGGGSNAMGLFHEFV-NDKDVRL 325 (465)
Q Consensus 250 ~~~~~~~~~y~~~s~~~~~p~~-~~v~~~~~~~g~e~~~qi~e~~g~~--~D~vvvpvG~GG~~aGi~~~~~-~~p~~rv 325 (465)
.++ .+ .|++ |||+ ..+..+|.++|.|+.+|+ +.. ||+||+|+||||+++|++.+++ .+|++||
T Consensus 143 -a~~-~g-~~~~------~~~~~~~~~~G~~tig~EI~eq~----~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~v 209 (420)
T PRK08639 143 -AEE-TG-ATFI------PPFDDPDVIAGQGTVAVEILEQL----EKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKI 209 (420)
T ss_pred -HHh-cC-Cccc------CCCCChhHhcchhHHHHHHHHhc----cccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEE
Confidence 333 23 3443 5552 234588888888876554 333 9999999999999999999998 6899999
Q ss_pred EEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHH
Q 012341 326 IGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEA 405 (465)
Q Consensus 326 igVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~ 405 (465)
|||||++++ .+..++..|++.. .....++++|+....+|.....+....+|+++.|+|+|+
T Consensus 210 igVep~~~~----~~~~s~~~g~~~~---------------~~~~~t~a~gi~v~~~g~~~~~~~~~~vd~~v~V~d~ei 270 (420)
T PRK08639 210 IGVEPAGAA----SMKAALEAGKPVT---------------LEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLVPEGAV 270 (420)
T ss_pred EEEEECCCC----cHHHHHhCCCcee---------------CCCCCCeecccccCCccHHHHHHHHHhCCeEEEECHHHH
Confidence 999999984 5778888887653 223578999988766665333344456899999999999
Q ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 406 LEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 406 ~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
++++++|++++|+++||++|+++|+++++.+++ ++++||+|+|| ||.|++.+.+++
T Consensus 271 ~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~~-~~~~vv~v~sG-gn~d~~~~~~~~ 326 (420)
T PRK08639 271 CTTILELYNKEGIVAEPAGALSIAALELYKDEI-KGKTVVCVISG-GNNDIERMPEIK 326 (420)
T ss_pred HHHHHHHHHhcCceecchHHHHHHHHHhhhhhc-CCCeEEEEeCC-CCCCHHHHHHHH
Confidence 999999999999999999999999999876555 78899999998 799999988865
No 15
>PLN02970 serine racemase
Probab=100.00 E-value=1.4e-51 Score=415.24 Aligned_cols=313 Identities=18% Similarity=0.181 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHH
Q 012341 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (465)
Q Consensus 91 ~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~ 170 (465)
++++|..|+. .+.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..
T Consensus 10 ~~~~i~~a~~--------------~i~~~i~-~TPL~~~~~l~~~~------g~~i~~K~E~~nptGSfKdRga~~~i~~ 68 (328)
T PLN02970 10 DLSSIREARK--------------RIAPFIH-RTPVLTSSSLDALA------GRSLFFKCECFQKGGAFKFRGACNAIFS 68 (328)
T ss_pred CHHHHHHHHH--------------HHhCcCC-CCCeeechhhHHhh------CCeEEEEecCCCCCCCcHHHHHHHHHHH
Confidence 5788888886 4888895 89999999999876 6799999999999999999999999988
Q ss_pred HHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.+++..+.||++|+||||.|+|++|+.+|++|+||||+.. ++.|+..|+.|||+|+.++. +++++... .+++
T Consensus 69 ~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~-a~~l 141 (328)
T PLN02970 69 LSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNA---PACKVDAVIRYGGIITWCEP---TVESREAV-AARV 141 (328)
T ss_pred hhHhhcCCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhcCCEEEEeCC---CHHHHHHH-HHHH
Confidence 76544455788999999999999999999999999999975 34577889999999999985 35554433 3333
Q ss_pred HHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEe
Q 012341 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVE 329 (465)
Q Consensus 251 ~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe 329 (465)
.++ . ..|++++++++.+ ..++.++|.|+.+|+ . .||+||+|+|+||+++|++.+++ .+|.+|||+||
T Consensus 142 a~~-~-g~~~~~~~~n~~~-----~~g~~t~g~Ei~~ql----~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Ve 209 (328)
T PLN02970 142 QQE-T-GAVLIHPYNDGRV-----ISGQGTIALEFLEQV----P-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAE 209 (328)
T ss_pred HHh-c-CCEEeCCCCCcch-----hhehHHHHHHHHHhc----c-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEE
Confidence 333 2 3566666654332 267778888776554 3 59999999999999999999998 68999999999
Q ss_pred cCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHH
Q 012341 330 AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAF 409 (465)
Q Consensus 330 ~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~ 409 (465)
|.+++ .+..++..|++.. ...++++++|+.++ ++..........+++++.|+|+|+++++
T Consensus 210 p~~~~----~~~~s~~~g~~~~---------------~~~~~tia~gl~~~-~~~~~~~~~~~~~d~~v~V~d~e~~~a~ 269 (328)
T PLN02970 210 PKGAD----DAAQSKAAGEIIT---------------LPVTNTIADGLRAS-LGDLTWPVVRDLVDDVITVDDKEIIEAM 269 (328)
T ss_pred ECCCc----HHHHHHHcCCcee---------------CCCCCCccccccCC-cCHHHHHHHHhhCCEEEEECHHHHHHHH
Confidence 99983 5677787776532 23457899998764 4543222334467999999999999999
Q ss_pred HHHHHhcCCcccchHHHHHHHHHHhccc----CCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 410 KRSSRLEGIIPALETAHALAYLEKLCPT----LADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 410 ~~l~~~eGi~~~p~sa~alAa~~~l~~~----~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
++|++++|++++|++|++++++++...+ ..++++||+++|| ||.|++.+.+.+.
T Consensus 270 ~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~G-gn~~~~~~~~~~~ 327 (328)
T PLN02970 270 KLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSG-GNVDLGVLWESFS 327 (328)
T ss_pred HHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECC-CCCCHHHHHHHhh
Confidence 9999999999999999999997764332 1235799999999 7999999988764
No 16
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.2e-51 Score=427.58 Aligned_cols=313 Identities=24% Similarity=0.280 Sum_probs=256.9
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHH
Q 012341 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (465)
Q Consensus 90 ~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~ 169 (465)
.++++|..|++ ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++.
T Consensus 4 ~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~ls~~~------g~~i~~K~E~~nptGS~K~R~a~~~i~ 62 (404)
T PRK08198 4 LTLDDIEEARE--------------RLKGVVR-RTPLEYSRTLSELT------GAEVYLKCENLQRTGSFKIRGAYNKIA 62 (404)
T ss_pred CCHHHHHHHHH--------------HHhccCC-CCCceehhhHHHHh------CCEEEEEECCCCCCCCCHHHHHHHHHH
Confidence 46889999887 5888885 99999999999886 779999999999999999999999998
Q ss_pred HHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHH
Q 012341 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (465)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~ 249 (465)
.+.+.++.++||++|+||||+++|++|+++|++|+||||+.. +..|+++++.|||+|+.++. +++++...+.+
T Consensus 63 ~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~a~~- 135 (404)
T PRK08198 63 SLSEEERARGVVAASAGNHAQGVAYAASLLGIKATIVMPETA---PLSKVKATRSYGAEVVLHGD---VYDEALAKAQE- 135 (404)
T ss_pred hccHhhcCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHHH-
Confidence 887555566789999999999999999999999999999976 45688899999999999963 57777765544
Q ss_pred HHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEE
Q 012341 250 WVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGV 328 (465)
Q Consensus 250 ~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigV 328 (465)
+.++ .+ .|++++++++. +..+|.++|.|+.+| ++ .+|+||+|+||||+++|++.+++ .+|++|||||
T Consensus 136 ~~~~-~g-~~~~~~~~~~~-----~~~g~~t~a~EI~~q----~~-~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigV 203 (404)
T PRK08198 136 LAEE-TG-ATFVHPFDDPD-----VIAGQGTIGLEILED----LP-DVDTVVVPIGGGGLISGVATAVKALRPEVRVIGV 203 (404)
T ss_pred HHHh-cC-CEecCCCCCcc-----HHHHHHHHHHHHHHh----CC-CCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEE
Confidence 3333 23 45555554322 237888888877554 43 68999999999999999999998 7899999999
Q ss_pred ecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHH
Q 012341 329 EAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 408 (465)
Q Consensus 329 e~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a 408 (465)
||++++ .+..++..|++.. ....+++++|+....++.....+.+..+|+++.|+|+|++++
T Consensus 204 e~~~~~----~~~~~~~~g~~~~---------------~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v~V~d~e~~~a 264 (404)
T PRK08198 204 QAEGAP----AMPESLAAGRPVE---------------LESVDTIADGIAVKRPGDLTFEIIRELVDDVVTVSDEEIARA 264 (404)
T ss_pred EeCCCh----HHHHHHHcCCCEe---------------cCCCCccccccccCCcCHHHHHHHHHhCCEEEEECHHHHHHH
Confidence 999983 5777888887653 224678889887655554333344567899999999999999
Q ss_pred HHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 409 FKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 409 ~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
++++++++|++++|++|+++|+++++. .+.++++||+++|| |+.+.+.+.+++
T Consensus 265 ~~~l~~~~g~~~e~sga~~lAal~~~~-~~~~~~~vv~vl~g-gn~~~~~l~~ii 317 (404)
T PRK08198 265 ILLLLERAKLVVEGAGAVSVAALLSGK-LDVKGKKVVAVLSG-GNIDVLLLSRVI 317 (404)
T ss_pred HHHHHHhcCeEEehHHHHHHHHHHhch-hhcCCCeEEEEECC-CCCCHHHHHHHH
Confidence 999999999999999999999999875 34578999999998 799999988754
No 17
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=1.3e-51 Score=414.82 Aligned_cols=314 Identities=20% Similarity=0.215 Sum_probs=252.8
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHH
Q 012341 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (465)
Q Consensus 90 ~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~ 169 (465)
+++++|.+|+. +|+++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++.
T Consensus 6 ~~~~~i~~a~~--------------~i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~i~ 64 (321)
T PRK07048 6 PTYDDVAAAAA--------------RLAGVAH-RTPVLTSRTADART------GAQVFFKCENFQRMGAFKFRGAYNALS 64 (321)
T ss_pred CCHHHHHHHHH--------------HhhCCCC-CCCCccchhhHHhc------CCeEEEEeccCCCCCCeeHHHHHHHHH
Confidence 45888888887 5899995 99999999998775 789999999999999999999999998
Q ss_pred HHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHH
Q 012341 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (465)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~ 249 (465)
.+.+.++..+||++|+||||.|+|++|+.+|++|+||||+.. ++.|+.+|+.|||+|+.++. .++++.. ..++
T Consensus 65 ~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~---~~~k~~~~~~~GAeV~~~~~---~~~~~~~-~a~~ 137 (321)
T PRK07048 65 QFSPEQRRAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDA---PAAKVAATRGYGGEVVTYDR---YTEDREE-IGRR 137 (321)
T ss_pred hhhHhhcCCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHH-HHHH
Confidence 776444444688999999999999999999999999999976 35688999999999999984 3455443 3344
Q ss_pred HHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEE
Q 012341 250 WVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGV 328 (465)
Q Consensus 250 ~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigV 328 (465)
+.++ . ..|++++++++++ ..++.+++.|+.+| ++ .||+||+|+|+||+++|++.+++ .+|.+|||||
T Consensus 138 l~~~-~-g~~~~~~~~~~~~-----~~g~~t~~~EI~~q----~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigv 205 (321)
T PRK07048 138 LAEE-R-GLTLIPPYDHPHV-----IAGQGTAAKELFEE----VG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGV 205 (321)
T ss_pred HHHh-c-CCEEECCCCCcch-----hhccchHHHHHHhh----cC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 4333 2 3455555544332 36777777776544 44 69999999999999999999988 6899999999
Q ss_pred ecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHH
Q 012341 329 EAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 408 (465)
Q Consensus 329 e~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a 408 (465)
||++++ .+..++..|+... ...++++++|+..++++...........++++.|+|+|++++
T Consensus 206 ep~~~~----~~~~s~~~g~~~~---------------~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a 266 (321)
T PRK07048 206 EPEAGN----DGQQSFRSGEIVH---------------IDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDA 266 (321)
T ss_pred eeCCCh----hHHHHHHcCCccc---------------CCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHH
Confidence 999873 4667777776432 224678999887666665432233456799999999999999
Q ss_pred HHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 409 FKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 409 ~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
+++|++++|++++|++++++++++++.++. ++++||+|+|| ||.+++.+.+++.
T Consensus 267 ~~~l~~~~gi~~eps~a~~laa~~~~~~~~-~~~~vv~i~tG-Gn~~~~~~~~~~~ 320 (321)
T PRK07048 267 MRFFAERMKIVVEPTGCLGAAAALRGKVPL-KGKRVGVIISG-GNVDLARFAALLS 320 (321)
T ss_pred HHHHHHhCCceeccHHHHHHHHHHhCchhc-CCCeEEEEeCC-CCCCHHHHHHHhc
Confidence 999999999999999999999999876653 68899999998 7999999998763
No 18
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-51 Score=415.38 Aligned_cols=313 Identities=25% Similarity=0.261 Sum_probs=251.3
Q ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHH
Q 012341 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (465)
Q Consensus 89 ~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~ 168 (465)
|.++++|.+|+. +++++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++
T Consensus 2 ~~~~~~i~~a~~--------------~i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~Rga~~~l 60 (322)
T PRK06110 2 MFTLAELEAAAA--------------VVYAAMP-PTPQYRWPLLAERL------GCEVWVKHENHTPTGAFKVRGGLVYF 60 (322)
T ss_pred CCCHHHHHHHHH--------------HHhCcCc-CCCcccchhHHHHh------CCeEEEEeccCCCcCCcHHHHHHHHH
Confidence 345788888886 5889995 99999999999876 67999999999999999999999999
Q ss_pred HHHHHcCC-CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHH
Q 012341 169 LLAKRLGK-TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAI 247 (465)
Q Consensus 169 ~~a~~~g~-~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~ 247 (465)
..+.+++. ...|+++|+||||+|+|++|+++|++|+||||+..+ +.|+++|+.+||+|+.++. +++++...+.
T Consensus 61 ~~a~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~---~~k~~~i~~~GA~V~~~~~---~~~~~~~~a~ 134 (322)
T PRK06110 61 DRLARRGPRVRGVISATRGNHGQSVAFAARRHGLAATIVVPHGNS---VEKNAAMRALGAELIEHGE---DFQAAREEAA 134 (322)
T ss_pred HHhhhhcCCCceEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCC---HHHHHHHHHcCCEEEEECC---CHHHHHHHHH
Confidence 88876542 345889999999999999999999999999999753 4577899999999999863 5677766554
Q ss_pred HHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEE
Q 012341 248 RDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLI 326 (465)
Q Consensus 248 ~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvi 326 (465)
+ +.++ .+ .|+++++ ||+ +..+|.++|.|+.+| ++ .+|+||+|+|+||+++|++.+++ .+|++|||
T Consensus 135 ~-~~~~-~~-~~~~~~~---~~~---~~~G~~t~~~Ei~~q----~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi 200 (322)
T PRK06110 135 R-LAAE-RG-LHMVPSF---HPD---LVRGVATYALELFRA----VP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIV 200 (322)
T ss_pred H-HHHh-cC-CEEcCCC---CCh---HHhccchHHHHHHhh----CC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEE
Confidence 4 3433 23 4555443 332 236788888887554 44 68999999999999999999987 67899999
Q ss_pred EEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHH
Q 012341 327 GVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEAL 406 (465)
Q Consensus 327 gVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~ 406 (465)
+|||+++. .+..++..|+... .....++++|+.++..++....+.+..+++++.|+|+|++
T Consensus 201 ~Vep~~~~----~~~~~~~~g~~~~---------------~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~~Vsd~e~~ 261 (322)
T PRK06110 201 GVVSAHAP----AYALSFEAGRVVT---------------TPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVA 261 (322)
T ss_pred EEeeCCCh----HHHHHHHcCCccc---------------CCCCCCcccccCCCCccHHHHHHHHHhCCeEEEECHHHHH
Confidence 99999873 4667777776542 1235788888875433332222334577999999999999
Q ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 407 EAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 407 ~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
+++++|++++|+++||++++++++++++.+.+ ++++||+|+|| ||+|++.+.+++
T Consensus 262 ~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~~-~~~~Vv~i~tG-gn~d~~~~~~~~ 316 (322)
T PRK06110 262 AAMRAYFTDTHNVAEGAGAAALAAALQERERL-AGKRVGLVLSG-GNIDRAVFARVL 316 (322)
T ss_pred HHHHHHHHHcCcEEehHHHHHHHHHHhChhhh-CCCcEEEEECC-CCCCHHHHHHHH
Confidence 99999999999999999999999999876654 67899999999 799999998876
No 19
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=3.5e-51 Score=423.43 Aligned_cols=312 Identities=21% Similarity=0.236 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHH
Q 012341 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (465)
Q Consensus 91 ~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~ 170 (465)
++++|.+|+. +++++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++++++..
T Consensus 8 ~~~~i~~a~~--------------~~~~~i~-~TPl~~~~~ls~~~------g~~v~~K~E~~nptGSfK~Rga~~~i~~ 66 (406)
T PRK06382 8 SFDDILYAKS--------------YLEGYLN-RTPLIHSTTFGDEY------GGDIYFKLENFQKTGSFKSRGAVFKFSK 66 (406)
T ss_pred CHHHHHHHHH--------------HHhCcCC-CCCeeEhhhhHHHh------CCEEEEEecCCCCCCCCHHHHHHHHHHh
Confidence 5888888887 6899995 99999999999886 6799999999999999999999999987
Q ss_pred HHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.+.+..+.||++|+||||+|+|++|+.+|++|+||||+.. +..|+.+++.|||+|+.++. +++++...+ +++
T Consensus 67 ~~~~~~~~gvv~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~---~~~k~~~~~~~GA~Vv~~~~---~~~~a~~~a-~~l 139 (406)
T PRK06382 67 LSEDELRNGVITASAGNHAQGVAYAASINGIDAKIVMPEYT---IPQKVNAVEAYGAHVILTGR---DYDEAHRYA-DKI 139 (406)
T ss_pred cchhccCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHcCCEEEEECC---CHHHHHHHH-HHH
Confidence 76655545688999999999999999999999999999976 35678889999999999874 466765444 333
Q ss_pred HHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEe
Q 012341 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVE 329 (465)
Q Consensus 251 ~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe 329 (465)
.++ .+ .|+++++++ ..+.++|.++|.|+.+ |++ .||+||+|+|+||+++|++.+++ .+|++||||||
T Consensus 140 a~~-~~-~~~v~~~~~-----~~~i~g~~t~~~Ei~e----q~~-~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe 207 (406)
T PRK06382 140 AMD-EN-RTFIEAFND-----RWVISGQGTIGLEIME----DLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIE 207 (406)
T ss_pred HHh-cC-CEecCccCC-----hHHHHHHHHHHHHHHH----hcC-CCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 333 33 445444332 2345788887777654 454 69999999999999999999998 78999999999
Q ss_pred cCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHH
Q 012341 330 AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAF 409 (465)
Q Consensus 330 ~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~ 409 (465)
|+++ ..+.+++..|++.. ....+|+++|+..+.++.....+.+..+++++.|+|+|+++++
T Consensus 208 ~~~~----~~~~~~~~~~~~~~---------------~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~ei~~a~ 268 (406)
T PRK06382 208 SELS----DSMKASLREGKIVA---------------HTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTVTEESVSKAI 268 (406)
T ss_pred ECCC----hHHHHHHHcCCcee---------------cCCCCCccccccCCCccHHHHHHHHHcCCEEEEECHHHHHHHH
Confidence 9998 35677888776642 1235789999876544432223445678999999999999999
Q ss_pred HHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 410 KRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 410 ~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
++|++++|+++||++|+++|+++..... .++++||+|+|| ||+|+..+.+++
T Consensus 269 ~~l~~~~gi~~epsga~~laal~~~~~~-~~~~~Vv~i~sG-Gn~d~~~~~~~~ 320 (406)
T PRK06382 269 YKLFEREKIVAEPSGAVGLAAIMEGKVD-VKGKKVAIVVSG-GNINPLLMSKII 320 (406)
T ss_pred HHHHHHcCceechHHHHHHHHHHhcccc-CCCCEEEEEeCC-CCCCHHHHHHHH
Confidence 9999999999999999999988654322 367899999998 799999887765
No 20
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.4e-51 Score=435.77 Aligned_cols=306 Identities=25% Similarity=0.268 Sum_probs=253.5
Q ss_pred HHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHH
Q 012341 111 ELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGV 190 (465)
Q Consensus 111 ~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~ 190 (465)
.|...+.+.+ .+|||+++++|++.+ |.+||+|+|++|||||||+|++++.+..+.+....+.||++|+||||+
T Consensus 98 il~~~v~~~i-~~TPL~~s~~LS~~~------g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~aSaGNhAq 170 (591)
T PLN02550 98 ILSAKVYDVA-IESPLQLAKKLSERL------GVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQ 170 (591)
T ss_pred HHhhhhhccc-cCChhhhhHHhhHhh------CCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEEECCCHHHH
Confidence 3445678888 599999999999987 789999999999999999999999998775445555688999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCc
Q 012341 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (465)
Q Consensus 191 AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (465)
++|++|+++|++|+||||+.. +..|+++++.|||+|+.++. +++++.+.+.+ +.++ .+..|+ |||
T Consensus 171 gvA~aA~~lGika~IvmP~~t---p~~Kv~~~r~~GAeVvl~g~---~~dea~~~A~~-la~e-~g~~fi-------~pf 235 (591)
T PLN02550 171 GVALSAQRLGCDAVIAMPVTT---PEIKWQSVERLGATVVLVGD---SYDEAQAYAKQ-RALE-EGRTFI-------PPF 235 (591)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCC---CHHHHHHHHHH-HHHh-cCCEEE-------CCC
Confidence 999999999999999999987 35688999999999999973 57787665543 3333 333443 566
Q ss_pred h-hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCC
Q 012341 271 P-MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGE 348 (465)
Q Consensus 271 ~-~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~ 348 (465)
+ ..+..||.++|.|+.+|+ +..+|+||+|+||||+++|++.+++ .+|++|||||||+++ ..+..++..|+
T Consensus 236 ddp~viaGqgTig~EI~eQl----~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a----~~~~~s~~~G~ 307 (591)
T PLN02550 236 DHPDVIAGQGTVGMEIVRQH----QGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDA----NAMALSLHHGE 307 (591)
T ss_pred CChHHHHHHHHHHHHHHHHc----CCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCC----hHHHHHHhcCC
Confidence 3 245578888888876554 4358999999999999999999998 789999999999998 46778898887
Q ss_pred eEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHH
Q 012341 349 VGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL 428 (465)
Q Consensus 349 ~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~al 428 (465)
+.. .....++++|+....+|+....+.+.++|+++.|+|+|+.+|++.+++++|+++||++|+++
T Consensus 308 ~v~---------------~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~al 372 (591)
T PLN02550 308 RVM---------------LDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALAL 372 (591)
T ss_pred ccc---------------cCCCCCccceeecCCCCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHH
Confidence 653 22457899999877777654445566889999999999999999999999999999999999
Q ss_pred HHHHHhcc--cCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 429 AYLEKLCP--TLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 429 Aa~~~l~~--~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
|+++++.+ .+ ++++||+|+|| ||.|.+.+.++.
T Consensus 373 Aall~~~~~~~~-~g~~Vv~vlsG-gNid~~~l~~v~ 407 (591)
T PLN02550 373 AGAEAYCKYYGL-KDENVVAITSG-ANMNFDRLRIVT 407 (591)
T ss_pred HHHHHHHHhcCC-CCCeEEEEecC-CCCCHHHHHHHH
Confidence 99998764 34 67899999998 799999988764
No 21
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.2e-51 Score=426.60 Aligned_cols=306 Identities=26% Similarity=0.355 Sum_probs=244.2
Q ss_pred HHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHH
Q 012341 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (465)
Q Consensus 115 ~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~ 194 (465)
++.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|++++.+..+.+.+...+||++|+||||+++|+
T Consensus 9 ~i~~~i-~~TPl~~~~~ls~~~------g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~gvv~aSsGN~g~a~A~ 81 (409)
T TIGR02079 9 RLKEVV-PHTPLQLNERLSEKY------GANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQGFAY 81 (409)
T ss_pred HHhCcC-CCCCccccHHHHHHh------CCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHHHHH
Confidence 688888 499999999999886 7799999999999999999999999877544444456889999999999999
Q ss_pred HHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHH
Q 012341 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV 274 (465)
Q Consensus 195 aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v 274 (465)
+|+++|++|+||||+.. +..|+.+++.|||+|+.+.....+++++...+.+. .++ .+ .++++++++ | .+
T Consensus 82 ~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~-~~~-~g-~~~~~~~~~--~---~~ 150 (409)
T TIGR02079 82 ACRHLGVHGTVFMPATT---PKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREH-VED-HG-GTFIPPFDD--P---RI 150 (409)
T ss_pred HHHHcCCCEEEEECCCC---CHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHH-HHh-cC-CEEeCCCCC--H---hH
Confidence 99999999999999976 35688899999997542221114678877665543 333 23 344443322 2 23
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEeec
Q 012341 275 RDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLH 353 (465)
Q Consensus 275 ~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~ 353 (465)
..+|.++|.|+.+| ++..||+||+|+|+||+++|++.+++ .+|++|||||||++++ .+..++..|++..
T Consensus 151 ~~g~~ti~~Ei~~q----~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~----~~~~s~~~g~~~~-- 220 (409)
T TIGR02079 151 IEGQGTVAAEILDQ----LPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAP----SMKASLEAGEVVT-- 220 (409)
T ss_pred hhhhHHHHHHHHHh----cCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCC----cHHHHHHCCCcee--
Confidence 47888888877555 44459999999999999999999998 6899999999999984 5777888887643
Q ss_pred cceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Q 012341 354 GALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEK 433 (465)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~ 433 (465)
....+++++|+....+|.....+....+|+++.|+|+|+.+|+++|++++|+++||++|+++|++++
T Consensus 221 -------------~~~~~t~a~g~~v~~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~ 287 (409)
T TIGR02079 221 -------------LDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALER 287 (409)
T ss_pred -------------cCCCCCeeccccCCCCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHh
Confidence 2235789999887666643222334567899999999999999999999999999999999999998
Q ss_pred hcccCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 434 LCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 434 l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
+..+. ++++||+|+|| ||.|++.+.+++
T Consensus 288 ~~~~~-~~~~Vv~ilsG-gn~d~~~~~~~~ 315 (409)
T TIGR02079 288 LGEEI-KGKTVVCVVSG-GNNDIERTEEIR 315 (409)
T ss_pred hhhhc-CCCeEEEEECC-CCCCHHHHHHHH
Confidence 76553 68899999998 799999998865
No 22
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=3.6e-51 Score=430.70 Aligned_cols=308 Identities=25% Similarity=0.286 Sum_probs=254.7
Q ss_pred HHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHH
Q 012341 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (465)
Q Consensus 110 ~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg 189 (465)
+.|..++.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|++.+..+.+..+.+.||++|+||||
T Consensus 5 ~~~~~~v~~~i-~~TPL~~~~~Ls~~~------g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNha 77 (499)
T TIGR01124 5 AILTARVYEAA-QETPLQKAAKLSERL------GNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHA 77 (499)
T ss_pred HHHHhHhhCcc-CCCCeeehHHHHHHh------CCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEEECCCHHH
Confidence 35667788999 599999999999987 67999999999999999999999998876544444568899999999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCC
Q 012341 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 269 (465)
Q Consensus 190 ~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p 269 (465)
+++|++|+++|++|+||||+.. +..|+.+++.+||+|+.++. +++++...+.+ +.++ .+..| + ||
T Consensus 78 ~~vA~aa~~~Gi~~~IvmP~~t---p~~Kv~~~r~~GA~Vvl~g~---~~d~a~~~a~~-la~~-~g~~~-i------~p 142 (499)
T TIGR01124 78 QGVAFSAARLGLKALIVMPETT---PDIKVDAVRGFGGEVVLHGA---NFDDAKAKAIE-LSQE-KGLTF-I------HP 142 (499)
T ss_pred HHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEeCc---CHHHHHHHHHH-HHHh-cCCEe-e------CC
Confidence 9999999999999999999986 45688999999999999863 57777665543 3333 33334 3 55
Q ss_pred ch-hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccC
Q 012341 270 YP-MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKG 347 (465)
Q Consensus 270 ~~-~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G 347 (465)
|+ ..+..+|+++|.|+.+| ++..+|+||+|+||||+++|++.+++ ..|.+|||||||+++ ..+..++..|
T Consensus 143 ~~~~~~i~G~gtig~EI~~q----~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~----~~~~~s~~~g 214 (499)
T TIGR01124 143 FDDPLVIAGQGTLALEILRQ----VANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDS----DCMKQALDAG 214 (499)
T ss_pred CCChHHHHhhHHHHHHHHHh----CCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCC----hHHHHHHhcC
Confidence 53 24558888888887555 44469999999999999999999998 789999999999998 4678889888
Q ss_pred CeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHH
Q 012341 348 EVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHA 427 (465)
Q Consensus 348 ~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~a 427 (465)
++..+ ....++++|+.+..+|+....+.+.++|+++.|+|+|+.+|++.+++++|+++||++|++
T Consensus 215 ~~~~~---------------~~~~t~adgiav~~~g~~~~~~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~ 279 (499)
T TIGR01124 215 EPVDL---------------DQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALA 279 (499)
T ss_pred CceeC---------------CCCCCccCcccCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHH
Confidence 87642 346789999987777765444556678999999999999999999999999999999999
Q ss_pred HHHHHHhcccCC-CCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 428 LAYLEKLCPTLA-DGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 428 lAa~~~l~~~~~-~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
+|++++++++.. ++++||+|+|| +|.|++.+.+++
T Consensus 280 lAal~~~~~~~~~~~~~vv~i~sG-~n~~~~~l~~~~ 315 (499)
T TIGR01124 280 LAGLKKYVALHGIRGQTLVAILSG-ANMNFHRLRYVS 315 (499)
T ss_pred HHHHHHhhhhcCCCCCeEEEEECC-CCCCHHHHHHHH
Confidence 999999865422 58899999999 799999988764
No 23
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=5.8e-51 Score=410.03 Aligned_cols=312 Identities=23% Similarity=0.260 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHH
Q 012341 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (465)
Q Consensus 91 ~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~ 170 (465)
++++|..|+. +|.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++..
T Consensus 2 ~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~i~~ 60 (322)
T PRK07476 2 SLADIYRARR--------------RIAGRVR-RTPLVASASLSARA------GVPVWLKLETLQPTGSFKLRGATNALLS 60 (322)
T ss_pred CHHHHHHHHH--------------HHhCCCC-CCCceechhhHHhh------CCeEEEEEccCCCCCCchHHHHHHHHHh
Confidence 3688888887 5899995 89999999999876 7899999999999999999999999998
Q ss_pred HHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.+.+..+.||++|+||||+|+|++|+.+|++|+||||+.. ++.|+.+|+.|||+|+.++. +++++.+.+.+ +
T Consensus 61 a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~-~ 133 (322)
T PRK07476 61 LSAQERARGVVTASTGNHGRALAYAARALGIRATICMSRLV---PANKVDAIRALGAEVRIVGR---SQDDAQAEVER-L 133 (322)
T ss_pred hhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH-H
Confidence 88877776688999999999999999999999999999976 35688899999999999974 45666555433 3
Q ss_pred HHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEe
Q 012341 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVE 329 (465)
Q Consensus 251 ~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe 329 (465)
.++ .+ .+++++++|+.+ ..+|.++|.|+.+| ++ .+|+||+|+|+||+++|++.+++ ..|++||||||
T Consensus 134 ~~~-~g-~~~~~~~~n~~~-----~~g~~t~~~Ei~~Q----~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe 201 (322)
T PRK07476 134 VRE-EG-LTMVPPFDDPRI-----IAGQGTIGLEILEA----LP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVS 201 (322)
T ss_pred HHh-cC-CEEeCCCCCcce-----eechhHHHHHHHHh----Cc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 333 23 355566654332 36788888877555 43 58999999999999999999998 78999999999
Q ss_pred cCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCC--ch-hhhhccCCceEEEeCHHHHH
Q 012341 330 AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP--EH-SFLKDEGRAEYYNVTDDEAL 406 (465)
Q Consensus 330 ~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~--~~-~~l~~~~~~~~~~Vsd~e~~ 406 (465)
|+++ ..+..++..|++.. ...+.|+++|+. .+++. .. .......+++++.|+|+|++
T Consensus 202 ~~~~----~~~~~s~~~g~~~~---------------~~~~~t~a~~l~-~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~ 261 (322)
T PRK07476 202 MERG----AAMHASLAAGRPVQ---------------VEEVPTLADSLG-GGIGLDNRYTFAMCRALLDDVVLLDEAEIA 261 (322)
T ss_pred ECCc----hHHHHHHHcCCcee---------------CCCCCCcccccc-ccccCCcHHHHHHHHhcCCeEEEECHHHHH
Confidence 9987 35777888876543 234678888875 23332 11 22334567899999999999
Q ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 407 EAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 407 ~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
+++++|++++|++++|++++++|++++...+ .++++||+++|| ++.|.+.+.+++.
T Consensus 262 ~a~~~l~~~~gi~ve~a~a~~laal~~~~~~-~~~~~Vvvi~tG-g~~~~~~~~~~~~ 317 (322)
T PRK07476 262 AGIRHAYREERLVVEGAGAVGIAALLAGKIA-ARDGPIVVVVSG-ANIDMELHRRIIN 317 (322)
T ss_pred HHHHHHHHhcCceEeChhHHHHHHHHhCCcc-cCCCcEEEEECC-CCCCHHHHHHHHh
Confidence 9999999999999999999999999853222 234899999998 6999999988764
No 24
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=9.7e-51 Score=409.84 Aligned_cols=312 Identities=22% Similarity=0.292 Sum_probs=251.3
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHH
Q 012341 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (465)
Q Consensus 90 ~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~ 169 (465)
+++++|.+|+. +|.+.++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++.
T Consensus 5 ~~~~~i~~A~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~v~ 63 (338)
T PRK06608 5 QNPQNIAAAHN--------------RIKQYLH-LTPIVHSESLNEML------GHEIFFKVESLQKTGAFKVRGVLNHLL 63 (338)
T ss_pred CCHHHHHHHHH--------------HHhCcCc-CCCccchHhHHHHh------CCEEEEEeCCCCCCCCcHHHHHHHHHH
Confidence 46889999987 4788895 89999999999886 779999999999999999999999999
Q ss_pred HHHHcCC-CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHH
Q 012341 170 LAKRLGK-TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (465)
Q Consensus 170 ~a~~~g~-~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~ 248 (465)
.+.+.+. .++||++|+||||+|+|++|+.+|++|+||||+.. ++.|+++|+.+||+|+.++. .+++.+.+.+
T Consensus 64 ~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~---~~~k~~~l~~~GA~V~~~~~----~~~~~~~a~~ 136 (338)
T PRK06608 64 ELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNT---SKVKQQAALYYGGEVILTNT----RQEAEEKAKE 136 (338)
T ss_pred HhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC----HHHHHHHHHH
Confidence 9988776 25788999999999999999999999999999975 35688899999999999963 2444433332
Q ss_pred HHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEE
Q 012341 249 DWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIG 327 (465)
Q Consensus 249 ~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvig 327 (465)
. +.. ..|+++++++++ ...++.+++.|+. +|++..||+||+|+|+||+++|++.+++ .++.+||||
T Consensus 137 --~-~~~-~~~~~~~~~~~~-----~~~g~~t~a~Ei~----~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vig 203 (338)
T PRK06608 137 --D-EEQ-GFYYIHPSDSDS-----TIAGAGTLCYEAL----QQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIG 203 (338)
T ss_pred --H-HhC-CCEEcCCCCCHH-----HhccHHHHHHHHH----HhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEE
Confidence 2 222 356666654322 2366777777664 4555579999999999999999999887 689999999
Q ss_pred EecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCc-hhhhhccCCceEEEeCHHHHH
Q 012341 328 VEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE-HSFLKDEGRAEYYNVTDDEAL 406 (465)
Q Consensus 328 Ve~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~-~~~l~~~~~~~~~~Vsd~e~~ 406 (465)
|||.++ ..+..+|..|++... ...+.++++|+..+.++.. +..+.. .|+++.|+|+|++
T Consensus 204 Vep~~~----~~~~~s~~~g~~~~~--------------~~~~~t~~~gl~~~~~~~~~~~~~~~--~d~~v~Vsd~e~~ 263 (338)
T PRK06608 204 SEPLNA----NDAYLSLKNNKIYRL--------------NYSPNTIADGLKTLSVSARTFEYLKK--LDDFYLVEEYEIY 263 (338)
T ss_pred EeeCCC----hHHHHHHHcCCeEeC--------------CCCCCCeecccCCCCCCHHHHHHHHh--CCCEEEECHHHHH
Confidence 999987 356778888875431 1234689999887655443 222332 5889999999999
Q ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 407 EAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 407 ~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
+++++|++++|+++||++|+++++++++.++..++++||+|+|| |++|...+.+++
T Consensus 264 ~a~~~l~~~~gi~vepssaa~laa~~~~~~~~~~~~~Vv~v~tg-g~~d~~~~~~~~ 319 (338)
T PRK06608 264 YWTAWLTHLLKVICEPSSAINMVAVVNWLKTQSKPQKLLVILSG-GNIDPILYNELW 319 (338)
T ss_pred HHHHHHHHHcCcEEchHHHHHHHHHHhhchhhcCCCeEEEEeCC-CccCHHHHHHHH
Confidence 99999999999999999999999999987665678899999998 799998887754
No 25
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-50 Score=407.12 Aligned_cols=299 Identities=25% Similarity=0.328 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHH
Q 012341 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (465)
Q Consensus 91 ~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~ 170 (465)
++++|..|+. +|++++ ++|||++++.| +||+|+|++|||||||+|++++++..
T Consensus 22 ~~~~i~~A~~--------------~i~~~i-~~TPL~~~~~l------------~v~lK~E~~nptGSfK~RgA~~~l~~ 74 (349)
T PRK08813 22 SVADVLAAQA--------------RLRRYL-SPTPLHYAERF------------GVWLKLENLQRTGSYKVRGALNALLA 74 (349)
T ss_pred CHHHHHHHHH--------------HHhCcC-CCCCeEECCCC------------cEEEEecCCCCcCCCHHHHHHHHHHH
Confidence 5889999987 699999 59999998653 49999999999999999999999999
Q ss_pred HHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.+.+..+.||++|+||||+|+|++|+.+|++|+||||++. ++.|+.+++.|||+|+.++. +++++...+.+ +
T Consensus 75 a~~~~~~~~VV~aSsGN~G~alA~aa~~~Gi~~~IvvP~~~---~~~K~~~i~~~GAeVv~~g~---~~~~a~~~a~~-l 147 (349)
T PRK08813 75 GLERGDERPVICASAGNHAQGVAWSAYRLGVQAITVMPHGA---PQTKIAGVAHWGATVRQHGN---SYDEAYAFARE-L 147 (349)
T ss_pred HHHcCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHHH-H
Confidence 98888776789999999999999999999999999999976 45788999999999999963 57777655433 3
Q ss_pred HHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhhcCCCcEEEEEec
Q 012341 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEA 330 (465)
Q Consensus 251 ~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~~~p~~rvigVe~ 330 (465)
.++ . ..|++++++ || .+.+||.|+|.|+.+ | .||+||+|+|+||+++|++.+++ .+.+|||||||
T Consensus 148 a~~-~-g~~~v~~~~--np---~~i~G~~Tig~EI~e----~---~pD~VvvpvGgGGliaGia~~lk-~~~~rVigVqp 212 (349)
T PRK08813 148 ADQ-N-GYRFLSAFD--DP---DVIAGQGTVGIELAA----H---APDVVIVPIGGGGLASGVALALK-SQGVRVVGAQV 212 (349)
T ss_pred HHh-c-CCEEcCccC--Ch---HHHHHHHHHHHHHHc----C---CCCEEEEEeCccHHHHHHHHHHh-cCCCEEEEEEE
Confidence 333 2 345544432 22 345889999988753 2 48999999999999999999987 36799999999
Q ss_pred CCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHH
Q 012341 331 AGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFK 410 (465)
Q Consensus 331 ~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~ 410 (465)
++++ .++.+|. |.+.. .....|+++|+.....+.....+....+++++.|+|+|++++++
T Consensus 213 ega~----~~~~s~~-g~~~~---------------~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~ 272 (349)
T PRK08813 213 EGVD----SMARAIR-GDLRE---------------IAPVATLADGVKVKIPGFLTRRLCSSLLDDVVIVREAELRETLV 272 (349)
T ss_pred CCCc----hHHHHHc-CCCcc---------------cCCCCceecccccCCcchhHHHHHHHhCCeEEEECHHHHHHHHH
Confidence 9983 5677776 54321 22346899998754333333334556779999999999999999
Q ss_pred HHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 411 RSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 411 ~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
+|++++|+++||++|+++|+++++ ++++|++|+|| ||.|.+.+.+++.
T Consensus 273 ~l~~~~gl~vE~aga~alAa~~~~-----~~~~v~~vlsG-gN~d~~~~~~~~~ 320 (349)
T PRK08813 273 RLALEEHVIAEGAGALALAAGRRV-----SGKRKCAVVSG-GNIDATVLATLLS 320 (349)
T ss_pred HHHHHcCcEEEEcHHHHHHHHHHh-----CCCCEEEEECC-CCCCHHHHHHHHH
Confidence 999999999999999999998763 46789999998 7999999988764
No 26
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.7e-50 Score=427.21 Aligned_cols=307 Identities=25% Similarity=0.281 Sum_probs=252.7
Q ss_pred HHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHH
Q 012341 111 ELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGV 190 (465)
Q Consensus 111 ~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~ 190 (465)
.|..++.+.+ .+|||+++++|++.+ +.+||+|+|++|||||||+|+|.+.+..+.+....+.||++|+||||+
T Consensus 9 ~~~~~v~~~~-~~TPL~~~~~Ls~~~------g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV~aSaGNha~ 81 (504)
T PRK09224 9 ILTARVYDVA-QETPLEKAPKLSARL------GNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVITASAGNHAQ 81 (504)
T ss_pred HHHHHhcCcC-CCCCceehhHhHHHh------CCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEEEECcCHHHH
Confidence 5667888999 599999999999887 789999999999999999999999998776444445688999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCc
Q 012341 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (465)
Q Consensus 191 AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (465)
++|++|+++|++|+||||+.. +..|+..++.+||+|+.++. +++++...+.+ +.++ .+..| + |||
T Consensus 82 avA~aa~~lGi~~~IvmP~~t---p~~K~~~~r~~GA~Vi~~g~---~~~~a~~~a~~-l~~~-~g~~~-v------~~f 146 (504)
T PRK09224 82 GVALSAARLGIKAVIVMPVTT---PDIKVDAVRAFGGEVVLHGD---SFDEAYAHAIE-LAEE-EGLTF-I------HPF 146 (504)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHHH-HHHh-cCCEE-e------CCC
Confidence 999999999999999999976 45688899999999999973 57888766644 3333 33344 3 455
Q ss_pred h-hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCC
Q 012341 271 P-MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGE 348 (465)
Q Consensus 271 ~-~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~ 348 (465)
+ ..+..+|+++|.|+.+| ++..+|+||+|+||||+++|++.+++ ..|++|||||||+++ ..+..++..|+
T Consensus 147 ~~~~~i~G~gTi~~EI~~q----~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~----~~~~~s~~~g~ 218 (504)
T PRK09224 147 DDPDVIAGQGTIAMEILQQ----HPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDS----ACLKAALEAGE 218 (504)
T ss_pred CCcHHHHhHHHHHHHHHHh----ccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCC----hHHHHHHhcCC
Confidence 2 23458888888877555 44359999999999999999999998 789999999999998 45778888887
Q ss_pred eEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHH
Q 012341 349 VGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL 428 (465)
Q Consensus 349 ~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~al 428 (465)
+.. .....++++|+..+.+|.....+....+|+++.|+|+|+.+|++.+++++|+++||++|+++
T Consensus 219 ~~~---------------~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~l 283 (504)
T PRK09224 219 RVD---------------LPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALAL 283 (504)
T ss_pred Ccc---------------CCCCCcccCcccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHH
Confidence 653 23467889998876676554445566789999999999999999999999999999999999
Q ss_pred HHHHHhcccC-CCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 429 AYLEKLCPTL-ADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 429 Aa~~~l~~~~-~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
|+++++.++. -++++||+|+|| +|.|.+.+.+++
T Consensus 284 Aal~~~~~~~~~~g~~vv~i~sG-~n~~~~~l~~~~ 318 (504)
T PRK09224 284 AGLKKYVAQHGIEGETLVAILSG-ANMNFDRLRYVA 318 (504)
T ss_pred HHHHHhhhhcCCCCCeEEEEECC-CCCCHHHHHHHH
Confidence 9999986532 148899999999 799999988764
No 27
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=2.4e-50 Score=406.21 Aligned_cols=314 Identities=23% Similarity=0.250 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHH
Q 012341 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (465)
Q Consensus 91 ~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~ 170 (465)
++++|..++. ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..
T Consensus 10 ~~~~i~~a~~--------------~i~~~i~-~TPlv~~~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~i~~ 68 (333)
T PRK08638 10 AIDDIIEAKQ--------------RLAGRIR-KTPLPRSNYLSERC------KGEIFLKLENMQRTGSFKIRGAFNKLSS 68 (333)
T ss_pred CHHHHHHHHH--------------HhhCcCc-CCCceechhhHHhh------CCeEEEEeccCCccCCcHHHHHHHHHHh
Confidence 4788888886 5888995 99999999999876 6799999999999999999999999987
Q ss_pred HHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.+..+..+|+++|+||||.|+|++|+.+|++|+||||++. ++.|+.+|+.+||+|+.++. +++++...+ +++
T Consensus 69 ~~~~~~~~~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a-~~~ 141 (333)
T PRK08638 69 LTDAEKRKGVVACSAGNHAQGVALSCALLGIDGKVVMPKGA---PKSKVAATCGYGAEVVLHGD---NFNDTIAKV-EEI 141 (333)
T ss_pred ccHHhcCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCCC---cHHHHHHHHHcCCEEEEECc---CHHHHHHHH-HHH
Confidence 76533345788999999999999999999999999999976 35688899999999999873 567766544 334
Q ss_pred HHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEe
Q 012341 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVE 329 (465)
Q Consensus 251 ~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe 329 (465)
.++ .+ .|+++++++ |+. ..+|.++|.|+.+|+ + .+|+||+|+|+||+++|++.+++ .+|++||||||
T Consensus 142 a~~-~g-~~~~~~~~~--~~~---~~g~~t~a~Ei~~q~----~-~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVe 209 (333)
T PRK08638 142 VEE-EG-RTFIPPYDD--PKV---IAGQGTIGLEILEDL----W-DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQ 209 (333)
T ss_pred HHh-cC-CEEcCcCCC--cch---hccccHHHHHHHhhc----C-CCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 443 23 455566643 322 377888888776554 3 58999999999999999999998 68999999999
Q ss_pred cCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHH
Q 012341 330 AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAF 409 (465)
Q Consensus 330 ~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~ 409 (465)
|+++ +.+..++..|++.. ...+.++++|+..+..+.....+.+...|+++.|+|+|+++++
T Consensus 210 p~g~----~~~~~s~~~g~~~~---------------~~~~~ti~~gl~~~~p~~~~~~~~~~~~d~~v~Vsd~ea~~a~ 270 (333)
T PRK08638 210 SENV----HGMAASFYAGEITT---------------HRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNAM 270 (333)
T ss_pred ECCC----chHHHHHHCCCccc---------------CCCCCCeeccccCCCccHHHHHHHHHhCCeEEEECHHHHHHHH
Confidence 9998 35777888877643 1234578888764333221111223467999999999999999
Q ss_pred HHHHHhcCCcccchHHHHHHHHHHhcc-cCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 410 KRSSRLEGIIPALETAHALAYLEKLCP-TLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 410 ~~l~~~eGi~~~p~sa~alAa~~~l~~-~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
++|++++|++++|++|+++|++..... ...++++||+|+|| ||+|++.+.+++.
T Consensus 271 ~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~G-gn~~~~~~~~~~~ 325 (333)
T PRK08638 271 KDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIISG-GNVDLSRVSQITG 325 (333)
T ss_pred HHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEECC-CCCCHHHHHHHHH
Confidence 999999999999999999988875432 22367899999998 8999999988753
No 28
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=2.6e-50 Score=404.00 Aligned_cols=311 Identities=23% Similarity=0.249 Sum_probs=245.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHH
Q 012341 91 ALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL 170 (465)
Q Consensus 91 ~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~ 170 (465)
++++|.+|+. +|.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..
T Consensus 2 ~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~K~R~a~~~i~~ 60 (317)
T TIGR02991 2 TLQDIERAAA--------------RISGRVE-ETPLVESPSLSELC------GVPVHLKLEHRQTTGSFKLRGATNAVLS 60 (317)
T ss_pred CHHHHHHHHH--------------HHhCcCC-CCCceechhhHHhh------CCeEEEEeccCCCCCCcHHHHHHHHHHh
Confidence 4778888887 5899995 99999999998876 6799999999999999999999999887
Q ss_pred HHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.+......|+++|+||||+|+|++|+++|++|+||||+.. ++.|+.+|+.|||+|+.++. +++++.+.+ +++
T Consensus 61 ~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a-~~~ 133 (317)
T TIGR02991 61 LSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATICMSELV---PQNKVDEIRRLGAEVRIVGR---SQDDAQEEV-ERL 133 (317)
T ss_pred hhHhccCCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCC---CHHHHHHHHHcCCEEEEeCC---CHHHHHHHH-HHH
Confidence 65433334688999999999999999999999999999975 35688899999999999984 456655443 333
Q ss_pred HHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEe
Q 012341 251 VTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVE 329 (465)
Q Consensus 251 ~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe 329 (465)
.++ . ..|++++++| |+ ..++|.++|.|+.+| ++ .+|+||+|+|+||+++|++.+++ ..|.+||||||
T Consensus 134 ~~~-~-g~~~~~~~~n--~~---~~~g~~t~a~Ei~~q----~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigve 201 (317)
T TIGR02991 134 VAD-R-GLTMLPPFDH--PD---IVAGQGTLGLEVVEQ----MP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVS 201 (317)
T ss_pred HHh-c-CCEeeCCCCC--hH---HHhhHHHHHHHHHHh----CC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 333 2 3455555443 22 237788877776554 43 58999999999999999999998 68999999999
Q ss_pred cCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCC--Cc-hhhhhccCCceEEEeCHHHHH
Q 012341 330 AAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVG--PE-HSFLKDEGRAEYYNVTDDEAL 406 (465)
Q Consensus 330 ~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg--~~-~~~l~~~~~~~~~~Vsd~e~~ 406 (465)
|+++ ..+..++..|++.. ...++|+++|+.. +++ .. ...+....+|+++.|+|+|++
T Consensus 202 p~~~----~~~~~s~~~g~~~~---------------~~~~~tia~~l~~-g~~~~~~~~~~~~~~~vd~~v~V~d~e~~ 261 (317)
T TIGR02991 202 MERG----AAMKASLQAGRPVL---------------VAELPTLADSLGG-GIGLDNRVTFAMCKALLDEIVLVSEAEIA 261 (317)
T ss_pred ECCc----hHHHHHHHcCCccc---------------CCCCCChhhhhhh-ccCCCCHHHHHHHHHhCCeEEEECHHHHH
Confidence 9986 35667777776542 1245788887742 222 12 222344567999999999999
Q ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 407 EAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 407 ~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
+++++|++++|+++||++|+++|++++.. +..+++||+|+|| +|.|.+.+.++++
T Consensus 262 ~a~~~l~~~~g~~ve~s~a~~~Aal~~~~--~~~~~~vvvvltG-~n~~~~~~~~~~~ 316 (317)
T TIGR02991 262 AGIRHAYAEEREIVEGAGAVGIAALLAGK--IKNPGPCAVIVSG-RNIDMDLHKRIID 316 (317)
T ss_pred HHHHHHHHhCCcEEcchHHHHHHHHHcCc--cccCCcEEEEeCC-CCCCHHHHHHHHc
Confidence 99999999999999999999999997532 2357789999999 6999999998875
No 29
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2e-50 Score=412.88 Aligned_cols=310 Identities=20% Similarity=0.218 Sum_probs=237.7
Q ss_pred HHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcC---CCeEEEEcCCChHHH
Q 012341 114 GILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG---KTRIIAETGAGQHGV 190 (465)
Q Consensus 114 ~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g---~~~~Vv~aSsGNhg~ 190 (465)
..+.+++| +|||+++++|+..+ +.+||+|+|++|||||||||++.+++..+.+.+ +..+|+++||||||+
T Consensus 45 ~~~~~~ig-~TPLv~~~~l~~~~------g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~ 117 (423)
T PLN02356 45 NGLIDAIG-NTPLIRINSLSEAT------GCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAI 117 (423)
T ss_pred hhHHhhcC-CCceEECccccccc------CCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHH
Confidence 34566786 89999999998765 789999999999999999999999999887755 445788899999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCC----CCCHHH-HHH--HHHHHHHHcc---------
Q 012341 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG----TATLKD-ATS--EAIRDWVTNV--------- 254 (465)
Q Consensus 191 AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~----~~~~~d-a~~--~a~~~~~~~~--------- 254 (465)
|+|++|+.+|++|+||||+.. ++.|+++|+.|||+|+.++.. .+++.+ +.. ...+++.++.
T Consensus 118 alA~~aa~~G~~~~ivvP~~~---s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~ 194 (423)
T PLN02356 118 SLATVAPAYGCKCHVVIPDDV---AIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGI 194 (423)
T ss_pred HHHHHHHHcCCcEEEEECCCC---cHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 999999999999999999976 456888999999999999642 112211 111 0111111110
Q ss_pred ----------------------CCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHH
Q 012341 255 ----------------------ETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMG 312 (465)
Q Consensus 255 ----------------------~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aG 312 (465)
....|+++|++|+.++. .+++. |..||++|+++.+|+||+|+||||+++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~---ahg~g-----Tg~EI~eQl~g~~D~vVv~vGtGGti~G 266 (423)
T PLN02356 195 HLEKTNGCISEEEKENSLFSSSCTGGFFADQFENLANFR---AHYEG-----TGPEIWEQTQGNLDAFVAAAGTGGTLAG 266 (423)
T ss_pred cccccccccccccccccccccCCCCcEecCccCCcchHH---HHHhh-----HHHHHHHhcCCCCCEEEeCCCchHHHHH
Confidence 02346778887766543 13333 3555677776679999999999999999
Q ss_pred HhHHhh-cCCCcEEEEEecCCCCCCch-----hhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCch
Q 012341 313 LFHEFV-NDKDVRLIGVEAAGFGLDSG-----KHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEH 386 (465)
Q Consensus 313 i~~~~~-~~p~~rvigVe~~~~~~~~~-----~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~ 386 (465)
++.+++ .+|++|||+|||.++.+... .++.++..|+... ...+++++|+..+.+ .
T Consensus 267 va~~lK~~~P~vkVigVep~~s~~~~~~~~~~~~~~s~~~G~~~~----------------~~~~tia~Gig~~~~---~ 327 (423)
T PLN02356 267 VSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLK----------------NPFDTITEGIGINRL---T 327 (423)
T ss_pred HHHHHHHhCCCCEEEEEecCCCccccccccchhhhhhhhcCCccC----------------CCCCeecCcCcCCCC---C
Confidence 999998 78999999999998754321 2444555554321 123688888864322 2
Q ss_pred hhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHH
Q 012341 387 SFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAI 460 (465)
Q Consensus 387 ~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~ 460 (465)
..+....+|+++.|+|+|+++++++|++++|++++|++|+++++++++++++.++++||+|+||+|.+|++++.
T Consensus 328 ~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~~la~~~~~g~~VV~Il~d~G~kyl~~~~ 401 (423)
T PLN02356 328 QNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSLGPGHTIVTILCDSGMRHLSKFH 401 (423)
T ss_pred hhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHHHHHHHhCCCCeEEEEECCCCcchhhhhc
Confidence 22344567999999999999999999999999999999999999999887666789999999999999999864
No 30
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-51 Score=398.80 Aligned_cols=301 Identities=27% Similarity=0.295 Sum_probs=259.6
Q ss_pred HHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHH
Q 012341 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (465)
Q Consensus 115 ~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~ 194 (465)
.+++.+ ..|||.+.-.|++.+ +.++|+|+|++||+||||.||+.+++..+.++++...|+++|+||||+|+|+
T Consensus 59 ~i~~~~-~~TPl~~s~~lS~~~------g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 59 KIYPVI-VETPLLKSVALSKKA------GMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIASSAGNHAQAAAY 131 (457)
T ss_pred ccccce-ecccchhhhhhhhhc------CCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEEecCccHHHHHHH
Confidence 477777 489999998899987 8999999999999999999999999987766665667889999999999999
Q ss_pred HHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchh-H
Q 012341 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM-M 273 (465)
Q Consensus 195 aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~-~ 273 (465)
+|+++|++++||||..+ +..|++.++.+||+|+..+ .++++|...+.+... +++..|+ ||||. +
T Consensus 132 aa~~LgipaTIVmP~~t---p~~kiq~~~nlGA~Vil~G---~~~deAk~~a~~lAk--e~gl~yI-------~pfDhP~ 196 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVAT---PLMKIQRCRNLGATVILSG---EDWDEAKAFAKRLAK--ENGLTYI-------PPFDHPD 196 (457)
T ss_pred HHHhcCCceEEEecCCC---hHHHHHHHhccCCEEEEec---ccHHHHHHHHHHHHH--hcCceec-------CCCCCch
Confidence 99999999999999988 5679999999999999876 468888877766433 3355564 88863 6
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEee
Q 012341 274 VRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352 (465)
Q Consensus 274 v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~ 352 (465)
+++||+|+|.|+.+|+.+ .+++|+|||||||+++|++.+++ ..|.++|||||++++ ..+..+|+.|++..+
T Consensus 197 I~aGqgTig~EIl~ql~~----~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a----~~f~~sl~~g~~V~l 268 (457)
T KOG1250|consen 197 IWAGQGTIGLEILEQLKE----PDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGA----HSFNASLKAGKPVTL 268 (457)
T ss_pred hhcCcchHHHHHHHhhcC----CCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCc----HHHHHHHhcCCeeec
Confidence 789999999998777742 35599999999999999999988 689999999999998 568899999999864
Q ss_pred ccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHH
Q 012341 353 HGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLE 432 (465)
Q Consensus 353 ~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~ 432 (465)
+...|+|+|++++.+|.+...+.....|+++.|+|+||..++.++.++|..++||++|+|+|+++
T Consensus 269 ---------------p~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~ 333 (457)
T KOG1250|consen 269 ---------------PKITSLADGLAVKTVGENTFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIY 333 (457)
T ss_pred ---------------ccccchhcccccchhhHHHHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHH
Confidence 35789999999999998866676778899999999999999999999999999999999999999
Q ss_pred HhcccCCCCCEEEEEeCCCCCCCHHHHHH
Q 012341 433 KLCPTLADGTKVVVNFSGRGDKDVQTAIK 461 (465)
Q Consensus 433 ~l~~~~~~~~~VVvv~tG~g~k~~~~v~~ 461 (465)
.......++++||.+++| +|.+.+.+..
T Consensus 334 ~~~~~~lk~~~vv~ilsG-~n~~~~~L~~ 361 (457)
T KOG1250|consen 334 SGKLNHLKGKKVVSILSG-GNIDFDSLGR 361 (457)
T ss_pred hccccccCCceEEeeccc-CCCCcccccc
Confidence 873333488999999998 6888877643
No 31
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=3.2e-50 Score=413.77 Aligned_cols=294 Identities=24% Similarity=0.307 Sum_probs=241.4
Q ss_pred CCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeE
Q 012341 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC 203 (465)
Q Consensus 124 TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~ 203 (465)
|||+++++|++.+ |.+||+|+|++|||||||+|+|.+++..+.+.++.++|+++|+||||+|+|++|+++|++|
T Consensus 1 TPl~~~~~ls~~~------g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~ 74 (380)
T TIGR01127 1 TPLIYSTTLSDIT------GSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKA 74 (380)
T ss_pred CCceehHHHHHHh------CCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCE
Confidence 8999999999887 7899999999999999999999999998887777667999999999999999999999999
Q ss_pred EEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHH
Q 012341 204 IVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGK 283 (465)
Q Consensus 204 ~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~ 283 (465)
+||||+.. +..|+++|+.|||+|+.++. +++++.+.+.+ +.++ .+ .++++++++ | .+..+|.++|.
T Consensus 75 ~iv~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~a~~~a~~-~~~~-~~-~~~~~~~~~--~---~~~~g~~t~~~ 140 (380)
T TIGR01127 75 VIVMPESA---PPSKVKATKSYGAEVILHGD---DYDEAYAFATS-LAEE-EG-RVFVHPFDD--E---FVMAGQGTIGL 140 (380)
T ss_pred EEEEcCCC---cHHHHHHHHHCCCEEEEECC---CHHHHHHHHHH-HHHh-cC-CEecCCCCC--h---hhhhhhHHHHH
Confidence 99999976 35688999999999999863 57777655533 3333 33 444444432 2 23477888887
Q ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccc
Q 012341 284 ETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQN 362 (465)
Q Consensus 284 e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~ 362 (465)
|+. +|++ .+|+||+|+||||+++|++.+++ .+|++|||||||+++ ..++.++..|++..
T Consensus 141 Ei~----~q~~-~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~----~~~~~~~~~g~~~~----------- 200 (380)
T TIGR01127 141 EIM----EDIP-DVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA----PSMYESLREGKIKA----------- 200 (380)
T ss_pred HHH----HhCC-CCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC----hHHHHHHHcCCcee-----------
Confidence 765 4454 69999999999999999999998 689999999999998 35777888887653
Q ss_pred cCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCC
Q 012341 363 EDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGT 442 (465)
Q Consensus 363 ~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~ 442 (465)
.....++++|+.++..+.....+....+|+++.|+|+|+.+|+++|++++|++++|++|+++|++++.... .+++
T Consensus 201 ----~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~-~~~~ 275 (380)
T TIGR01127 201 ----VESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD-VKGK 275 (380)
T ss_pred ----cCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc-cCCC
Confidence 22367899999865555433334456789999999999999999999999999999999999999875433 3688
Q ss_pred EEEEEeCCCCCCCHHHHHHHh
Q 012341 443 KVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 443 ~VVvv~tG~g~k~~~~v~~~~ 463 (465)
+||+++|| ||.|.+.+.+++
T Consensus 276 ~vv~i~sG-Gn~d~d~l~~vi 295 (380)
T TIGR01127 276 KIAVVLSG-GNIDLNLLNKII 295 (380)
T ss_pred eEEEEeCC-CCCCHHHHHHHH
Confidence 99999998 799999987765
No 32
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=8.5e-50 Score=400.71 Aligned_cols=310 Identities=26% Similarity=0.306 Sum_probs=244.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHH
Q 012341 92 LSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLA 171 (465)
Q Consensus 92 ~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a 171 (465)
+++|.+++. ++.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+
T Consensus 4 ~~~i~~a~~--------------~~~~~i~-~TPLv~~~~l~~~~------g~~i~~K~E~~nptgS~KdR~a~~~~~~l 62 (317)
T PRK06815 4 FDAILEAHQ--------------RLRPQVR-VTPLEHSPLLSQHT------GCEVYLKCEHLQHTGSFKFRGASNKLRLL 62 (317)
T ss_pred HHHHHHHHH--------------HhhCCCC-CCCccccHhHHHhh------CCeEEEEecCCCCCCCcHHHHHHHHHHhc
Confidence 678888886 5889995 99999999999876 78999999999999999999999998866
Q ss_pred HHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 012341 172 KRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (465)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~ 251 (465)
.+..+...|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++. +++++...+ +++.
T Consensus 63 ~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a-~~~~ 135 (317)
T PRK06815 63 NEAQRQQGVITASSGNHGQGVALAAKLAGIPVTVYAPEQA---SAIKLDAIRALGAEVRLYGG---DALNAELAA-RRAA 135 (317)
T ss_pred chhhcCceEEEECCChHHHHHHHHHHHhCCCEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHH-HHHH
Confidence 4433344588999999999999999999999999999976 35688999999999999985 355654433 3333
Q ss_pred HccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEec
Q 012341 252 TNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEA 330 (465)
Q Consensus 252 ~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~ 330 (465)
++ .+ .++++++++++ ...++.+++.|+.+| ++ .||+||+|+|+||+++|++.+++ .+|++|||||||
T Consensus 136 ~~-~~-~~~~~~~~~~~-----~~~g~~t~a~Ei~~q----~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep 203 (317)
T PRK06815 136 EQ-QG-KVYISPYNDPQ-----VIAGQGTIGMELVEQ----QP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWP 203 (317)
T ss_pred Hh-cC-CEEecCCCChh-----hhcchhHHHHHHHHh----cC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 32 23 34445554322 236777777776554 44 59999999999999999999998 679999999999
Q ss_pred CCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCc--hhhhhccCCceEEEeCHHHHHHH
Q 012341 331 AGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPE--HSFLKDEGRAEYYNVTDDEALEA 408 (465)
Q Consensus 331 ~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~--~~~l~~~~~~~~~~Vsd~e~~~a 408 (465)
+++. .++.++..|++.. ....+++++|+.. +.++. ...+.....++++.|+|+|++++
T Consensus 204 ~~~~----~~~~~~~~g~~~~---------------~~~~~t~~~gl~~-~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a 263 (317)
T PRK06815 204 ANSP----SLYTSLEAGEIVE---------------VAEQPTLSDGTAG-GVEPGAITFPLCQQLIDQKVLVSEEEIKEA 263 (317)
T ss_pred CCCC----cHHHHHHCCCccc---------------CCCCCChhhhhcc-CCcccHHHHHHHHHhCCeEEEECHHHHHHH
Confidence 9984 4667777776432 1234677777642 22222 11234456799999999999999
Q ss_pred HHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 409 FKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 409 ~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
+++|++++||++||++|+++++++++++++ ++++||+|+|| ++.+.+.+.+++
T Consensus 264 ~~~la~~~gi~vepssg~alaa~~~~~~~~-~~~~vv~i~tG-~~~~~~~~~~~~ 316 (317)
T PRK06815 264 MRLIAETDRWLIEGAAGVALAAALKLAPRY-QGKKVAVVLCG-KNIVLEKYLEAV 316 (317)
T ss_pred HHHHHHhcCCeEecHHHHHHHHHHhCchhc-CCCcEEEEECC-CCCCHHHHHHHh
Confidence 999999999999999999999999988765 68899999999 688899888765
No 33
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-49 Score=398.44 Aligned_cols=306 Identities=25% Similarity=0.267 Sum_probs=241.6
Q ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHH
Q 012341 89 MYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQA 168 (465)
Q Consensus 89 ~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~ 168 (465)
+++++||..|+. +|.++++ +|||+++++|+. ++.+||+|+|++|||||||+|++++++
T Consensus 4 ~~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~-------~~~~i~~K~E~~nptGS~K~R~a~~~~ 61 (310)
T PRK08246 4 MITRSDVRAAAQ--------------RIAPHIR-RTPVLEADGAGF-------GPAPVWLKLEHLQHTGSFKARGAFNRL 61 (310)
T ss_pred CCCHHHHHHHHH--------------HHhCcCC-CCCeeecccccc-------CCCEEEEEECCCCCCCCCHHHHHHHHH
Confidence 456899999997 5889995 999999998864 257999999999999999999999988
Q ss_pred HHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHH
Q 012341 169 LLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (465)
Q Consensus 169 ~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~ 248 (465)
..+.+ +.+.||++|+||||+|+|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++. +++++...+.+
T Consensus 62 ~~~~~--~~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a~~ 133 (310)
T PRK08246 62 LAAPV--PAAGVVAASGGNAGLAVAYAAAALGVPATVFVPETA---PPAKVARLRALGAEVVVVGA---EYADALEAAQA 133 (310)
T ss_pred Hhhcc--cCCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHCCCEEEEeCC---CHHHHHHHHHH
Confidence 87655 345688999999999999999999999999999975 35588899999999999974 45666544433
Q ss_pred HHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhhcCCCcEEEEE
Q 012341 249 DWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGV 328 (465)
Q Consensus 249 ~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~~~p~~rvigV 328 (465)
..++ . ..|+++++++ |+ ...++.++|+|+.+|+ + .||+||+|+|+||+++|++.+++ +.+|||+|
T Consensus 134 -~~~~-~-g~~~~~~~~n--~~---~i~g~~t~~~Ei~eq~----~-~~D~iv~~vG~GG~~~Gi~~~~~--~~~~vi~v 198 (310)
T PRK08246 134 -FAAE-T-GALLCHAYDQ--PE---VLAGAGTLGLEIEEQA----P-GVDTVLVAVGGGGLIAGIAAWFE--GRARVVAV 198 (310)
T ss_pred -HHHh-c-CCEeCCCCCC--hh---hhcchHHHHHHHHHhc----C-CCCEEEEecCccHHHHHHHHHhc--CCCEEEEE
Confidence 3333 2 3466555543 32 2367888888876554 3 69999999999999999999986 34899999
Q ss_pred ecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHH
Q 012341 329 EAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 408 (465)
Q Consensus 329 e~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a 408 (465)
||++++ .+..+|+.|++... ....+++++++.+.++.....+.+...++++.|+|+|++++
T Consensus 199 e~~~~~----~~~~s~~~g~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a 259 (310)
T PRK08246 199 EPEGAP----TLHAALAAGEPVDV---------------PVSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAA 259 (310)
T ss_pred eeCCCh----HHHHHHHcCCcccC---------------CCCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHH
Confidence 999983 57778888876421 12234456666555554333344556899999999999999
Q ss_pred HHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHH
Q 012341 409 FKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTA 459 (465)
Q Consensus 409 ~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v 459 (465)
+++|++++|++++|++|+++|++++......++++||+|+|| +|+|++.+
T Consensus 260 ~~~l~~~egi~~e~s~aa~lAa~~~~~~~~~~~~~vv~i~~g-~n~d~~~~ 309 (310)
T PRK08246 260 RRALWEELRLAVEPGAATALAALLSGAYVPAPGERVAVVLCG-ANTDPATL 309 (310)
T ss_pred HHHHHHHcCceeehHHHHHHHHHHhCCccccCCCeEEEEECC-CCCChhhc
Confidence 999999999999999999999998765444468899999999 69998764
No 34
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.1e-49 Score=399.30 Aligned_cols=304 Identities=21% Similarity=0.251 Sum_probs=238.5
Q ss_pred CCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC--CeEEEEcCCChHHHHHHHHHHHcC
Q 012341 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK--TRIIAETGAGQHGVATATVCARFG 200 (465)
Q Consensus 123 ~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~--~~~Vv~aSsGNhg~AlA~aa~~~G 200 (465)
+|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+.+++. .+.|+++|+||||+|+|++|+.+|
T Consensus 1 ~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G 74 (316)
T cd06448 1 KTPLIESTALSKTA------GCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLG 74 (316)
T ss_pred CCCccccchhhHhh------CCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcC
Confidence 59999999999876 6799999999999999999999999998888773 457889999999999999999999
Q ss_pred CeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHH
Q 012341 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAV 280 (465)
Q Consensus 201 i~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~ 280 (465)
++|+||||+.. ++.|+++|+.|||+|+.++.. .++++. +..+++.++ ....|++++++ ||+. ..+|.+
T Consensus 75 ~~~~iv~p~~~---~~~k~~~l~~~GA~v~~~~~~--~~~~~~-~~~~~l~~~-~~~~~~~~~~~--n~~~---~~g~~t 142 (316)
T cd06448 75 VPCTIVVPEST---KPRVVEKLRDEGATVVVHGKV--WWEADN-YLREELAEN-DPGPVYVHPFD--DPLI---WEGHSS 142 (316)
T ss_pred CCEEEEECCCC---CHHHHHHHHHcCCEEEEECCc--hHHHHH-HHHHHHHhc-cCCcEEeCCCC--Cchh---hccccH
Confidence 99999999975 356888999999999999752 144433 333333333 21345555553 3332 378888
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cC-CCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceee
Q 012341 281 IGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-ND-KDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSY 358 (465)
Q Consensus 281 ~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~-p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~ 358 (465)
+|.|+.+|+... ..||+||+|+|+||+++|++.+++ .+ ++++||+|||++++ .+..++..|++..
T Consensus 143 ~~~Ei~~q~~~~--~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~----~~~~~~~~g~~~~------- 209 (316)
T cd06448 143 MVDEIAQQLQSQ--EKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAH----SLNASLKAGKLVT------- 209 (316)
T ss_pred HHHHHHHHcccc--CCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCCh----HHHHHHHcCCcEe-------
Confidence 888876665211 159999999999999999999998 54 89999999999983 4667777776532
Q ss_pred cccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhc---
Q 012341 359 LLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLC--- 435 (465)
Q Consensus 359 ~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~--- 435 (465)
....+|+++|++.+.+++..........++++.|+|+|+++++++|++++||+++|++|+++|++++..
T Consensus 210 --------~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~ 281 (316)
T cd06448 210 --------LPKITSVATSLGAKTVSSQALEYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILD 281 (316)
T ss_pred --------cCCCCchhhccCCCCcCHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchh
Confidence 223578999987665554322233345689999999999999999999999999999999999998532
Q ss_pred --c--cCCCCCEEEEEeCCCCCCCHHHHHHHhcC
Q 012341 436 --P--TLADGTKVVVNFSGRGDKDVQTAIKYLQV 465 (465)
Q Consensus 436 --~--~~~~~~~VVvv~tG~g~k~~~~v~~~~~~ 465 (465)
+ .+.++++||+++||+..++++.+.+++.+
T Consensus 282 ~~~~~~~~~~~~Vv~iltg~n~~~~~~~~~~~~~ 315 (316)
T cd06448 282 LQLEVLLTPLDNVVVVVCGGSNITLEQLKEYKKQ 315 (316)
T ss_pred hhcccccCCCCeEEEEECCCCCCCHHHHHHHHHh
Confidence 1 35688999999999544599999998753
No 35
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.9e-49 Score=400.54 Aligned_cols=303 Identities=23% Similarity=0.267 Sum_probs=232.8
Q ss_pred HHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC---CeEEEEcCCChHHHH
Q 012341 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVA 191 (465)
Q Consensus 115 ~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhg~A 191 (465)
.+...++ +|||+++++|++.+ |.+||+|+|++|||||||+|++.+++..+.+.+. ..+|+++|+||||+|
T Consensus 6 ~~~~~~g-~TPL~~~~~l~~~~------g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~a 78 (330)
T PRK10717 6 DVSDTIG-NTPLIRLNRASEAT------GCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIG 78 (330)
T ss_pred hHHHHhC-CCceEEccccCCCC------CCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHH
Confidence 3566675 89999999998876 6799999999999999999999999998887764 246889999999999
Q ss_pred HHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCC-CC---CHHHHHHHHHHHHHHccCCceEEeccCCCC
Q 012341 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG-TA---TLKDATSEAIRDWVTNVETTHYILGSVAGP 267 (465)
Q Consensus 192 lA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~-~~---~~~da~~~a~~~~~~~~~~~~y~~~s~~~~ 267 (465)
+|++|+++|++|+||||+.. ++.|+.+|+.+||+|+.++.. .. .+.+...+..++...+..+..|+++++.+
T Consensus 79 lA~~a~~~G~~~~vv~p~~~---~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~- 154 (330)
T PRK10717 79 LALVAAARGYKTVIVMPETQ---SQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDN- 154 (330)
T ss_pred HHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCC-
Confidence 99999999999999999975 356889999999999999853 11 12222222222222222234666666543
Q ss_pred CCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhcc
Q 012341 268 HPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSK 346 (465)
Q Consensus 268 ~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~ 346 (465)
|. .+..++.+++.|+. +|++..+|+||+|+|+||+++|++.+++ ..|++|||+|||+++.. ..++..
T Consensus 155 -~~--~~~~g~~t~a~Ei~----~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~-----~~~~~~ 222 (330)
T PRK10717 155 -PA--NREAHYETTGPEIW----EQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSAL-----YSYYKT 222 (330)
T ss_pred -hh--hHHHHHHhHHHHHH----HhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCcc-----cccccc
Confidence 22 12245667777664 5555568999999999999999999998 67999999999998732 234444
Q ss_pred CCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHH
Q 012341 347 GEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAH 426 (465)
Q Consensus 347 G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~ 426 (465)
|+.. ....++++|+..+.+ ...+....+++++.|+|+|+++++++|++++|++++|++|+
T Consensus 223 g~~~-----------------~~~~~~~~gl~~~~~---~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga 282 (330)
T PRK10717 223 GELK-----------------AEGSSITEGIGQGRI---TANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGI 282 (330)
T ss_pred CCcC-----------------CCCCcccCcCCCCcC---CcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHH
Confidence 4321 134577777764322 12233345689999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHH
Q 012341 427 ALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAI 460 (465)
Q Consensus 427 alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~ 460 (465)
++++++++++++.++++||+|+||+|.||.+.+.
T Consensus 283 ~laa~~~l~~~~~~~~~Vv~v~~g~g~ky~~~~~ 316 (330)
T PRK10717 283 NVAAALRLARELGPGHTIVTILCDSGERYQSKLF 316 (330)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCCchhhccccc
Confidence 9999999887666788999999999999998764
No 36
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-49 Score=409.63 Aligned_cols=311 Identities=23% Similarity=0.256 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHH
Q 012341 90 YALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQAL 169 (465)
Q Consensus 90 ~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~ 169 (465)
.++++|.+|+. ++.++++ +|||+++++|++.+ |.+||+|+|++|||||||||++.+++.
T Consensus 5 ~~~~~i~~a~~--------------~i~~~i~-~TPl~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~i~ 63 (403)
T PRK07334 5 VTLADIRAAAA--------------RLAGQVL-RTPCVHSRTLSQIT------GAEVWLKFENLQFTASFKERGALNKLL 63 (403)
T ss_pred cCHHHHHHHHH--------------HHhCCCC-CCCccchHHHHHhh------CCeEEEEeccCCCCCCchHHHHHHHHH
Confidence 36889998887 5889995 99999999999876 679999999999999999999999988
Q ss_pred HHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHH
Q 012341 170 LAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (465)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~ 249 (465)
.+.+....+.|+++|+||||.|+|++|+++|++|+||||+.. ++.|+.+|+.+||+|+.++. +++++...+ ++
T Consensus 64 ~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~~---~~~~~~~~a-~~ 136 (403)
T PRK07334 64 LLTEEERARGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFT---PTVKVERTRGFGAEVVLHGE---TLDEARAHA-RE 136 (403)
T ss_pred hcCHHHhCCcEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECc---CHHHHHHHH-HH
Confidence 765433334588999999999999999999999999999976 35688899999999999863 467765544 33
Q ss_pred HHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEE
Q 012341 250 WVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGV 328 (465)
Q Consensus 250 ~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigV 328 (465)
+.++ . ..|+++++++ |+ ...+|.++|.|+. +|++ .+|+||+|+|+||+++|++.+++ .+|.+|||||
T Consensus 137 l~~~-~-~~~~~~~~~~--~~---~~~g~~t~~~Ei~----~q~~-~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~v 204 (403)
T PRK07334 137 LAEE-E-GLTFVHPYDD--PA---VIAGQGTVALEML----EDAP-DLDTLVVPIGGGGLISGMATAAKALKPDIEIIGV 204 (403)
T ss_pred HHHh-c-CCEecCCCCC--HH---HHHhHHHHHHHHH----hcCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3333 3 3455555443 22 2377777777764 5554 69999999999999999999998 7899999999
Q ss_pred ecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHH
Q 012341 329 EAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 408 (465)
Q Consensus 329 e~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a 408 (465)
||++++ .++.++..+.. .....++++|+..+..+.....+.....|+++.|+|+|++++
T Consensus 205 e~~~~~----~~~~~~~~~~~-----------------~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a 263 (403)
T PRK07334 205 QTELYP----SMYAAIKGVAL-----------------PCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLVSEADIEQA 263 (403)
T ss_pred EECCCc----hHHHHHhCCCc-----------------cCCCCCccceecCCCccHHHHHHHHHhCCeEEEECHHHHHHH
Confidence 999974 34555543211 123567888886543332223344557899999999999999
Q ss_pred HHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 409 FKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 409 ~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
++.|++++|++++|++|+++|+++++.+++ ++++||+++|| ||++.+.+.+++
T Consensus 264 ~~~l~~~~gi~v~~s~a~~~aa~~~~~~~~-~~~~vv~i~~g-gn~d~~~l~~il 316 (403)
T PRK07334 264 VSLLLEIEKTVVEGAGAAGLAALLAYPERF-RGRKVGLVLSG-GNIDTRLLANVL 316 (403)
T ss_pred HHHHHHhcCCEEechHHHHHHHHHhCchhc-CCCeEEEEECC-CCCCHHHHHHHH
Confidence 999999999999999999999999876654 67899999999 699999988765
No 37
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=8.1e-49 Score=405.90 Aligned_cols=344 Identities=16% Similarity=0.144 Sum_probs=253.2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhhh-----cCCCCCeEeccccchhhcCCC--CCCCeEEEeeCCCCC-CCCccHH
Q 012341 91 ALSELESALHKLADDRDFQEELSGILRDY-----VGRETPLYFAERLTEHYRRPN--GGGPHIYLKREDLNH-TGAHKIN 162 (465)
Q Consensus 91 ~~~~i~~a~~~~~~~~~~~~~l~~~i~~~-----vg~~TPL~~l~~Ls~~l~~~~--~~g~~i~lK~E~~~p-TGSfK~R 162 (465)
++++|..|+.++..-.+++.. +.... + .+|||++++.|++.++.+. ..+.+||+|+|++|| |||||+|
T Consensus 42 ~~~di~~A~~~i~~~~~~~~~---~~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~R 117 (441)
T PRK02991 42 TEADVQDAEARLKRFAPYLAK---AFPETAATGGI-IESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKAR 117 (441)
T ss_pred CHHHHHHHHHHHHhhhhhhhh---hCccccccCCc-cCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHH
Confidence 688999998742111111111 11111 5 4899999999998762000 012699999999999 9999999
Q ss_pred HHHHHHHHH-----HHcCC--------------------CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHH
Q 012341 163 NAVGQALLA-----KRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQAL 217 (465)
Q Consensus 163 ga~~~~~~a-----~~~g~--------------------~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~ 217 (465)
++++++..+ ++.|. ..+||++||||||+|+|++|+.+|++|+||||++. ++.
T Consensus 118 GA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a---~~~ 194 (441)
T PRK02991 118 GGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADA---RQW 194 (441)
T ss_pred HHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCC---CHH
Confidence 999987642 23332 13688999999999999999999999999999976 467
Q ss_pred hHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHH---HhC
Q 012341 218 NVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALE---KWG 294 (465)
Q Consensus 218 k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e---~~g 294 (465)
|+.+|+.|||+|+.++. +++++...+.+ ..++ ....|+++++++ | .+..||.|+|.|+.+|+-. ..+
T Consensus 195 K~~~ir~~GAeVi~~~~---~~~~a~~~A~~-la~~-~~~~~~~~~~~~--~---~~iaG~~Tig~EI~eQl~~~~~~vD 264 (441)
T PRK02991 195 KKDKLRSHGVTVVEYEG---DYGVAVEEGRK-AAES-DPNCYFIDDENS--R---TLFLGYAVAGLRLKAQLAEQGIVVD 264 (441)
T ss_pred HHHHHHhCCCEEEEECC---CHHHHHHHHHH-HHHh-cCCeEeCCCCCc--h---hHHHhHHHHHHHHHHHhhhccCccc
Confidence 88999999999999984 56776655443 3333 223455554322 2 2358999999999888742 111
Q ss_pred -CCCCEEEEcCCCchhHHHHhHHhh-c-CCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcc
Q 012341 295 -GKPDVLIACVGGGSNAMGLFHEFV-N-DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPH 371 (465)
Q Consensus 295 -~~~D~vvvpvG~GG~~aGi~~~~~-~-~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~ 371 (465)
..||+||+|+|+||+++|++.+++ . .|.+|||+|||+++ ..+..++..|+..... ..+......
T Consensus 265 ~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga----~~~~~s~~~G~~~~~~---------~~~~g~~~~ 331 (441)
T PRK02991 265 ADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS----PCMLLGLMTGLHDQIS---------VQDIGIDNL 331 (441)
T ss_pred cCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCC----hHHHHHHhcCCCccee---------ccccCCCCc
Confidence 247899999999999999999998 3 68899999999997 3577888888753210 000001356
Q ss_pred cccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcc--------cCC---C
Q 012341 372 SISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCP--------TLA---D 440 (465)
Q Consensus 372 tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~--------~~~---~ 440 (465)
|+++|+..+.++.....+.+..+++++.|+|+|++++++.|++++|+++||++|+++|+++++.+ .+. +
T Consensus 332 Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~ 411 (441)
T PRK02991 332 TAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLK 411 (441)
T ss_pred chhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccC
Confidence 89999987655544322334578999999999999999999999999999999999999986543 133 5
Q ss_pred CCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 441 GTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 441 ~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
+++||++.||+..++.+.+.+++.
T Consensus 412 ~~~vv~~~~gg~~~~~~~~~~~~~ 435 (441)
T PRK02991 412 NATHLVWATGGSMVPEEEMEQYLA 435 (441)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHH
Confidence 789999999999999999988764
No 38
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-49 Score=380.50 Aligned_cols=289 Identities=28% Similarity=0.379 Sum_probs=235.6
Q ss_pred HhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcC---CCeEEEEcCCChHHHHH
Q 012341 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG---KTRIIAETGAGQHGVAT 192 (465)
Q Consensus 116 i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g---~~~~Vv~aSsGNhg~Al 192 (465)
+.+.+| +|||+++.+++... +++||+|+|++||+||.|||.|++++..|.+.| +..+||++||||+|.++
T Consensus 5 ~~~~iG-~TPlvrL~~~~~~~------~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~L 77 (300)
T COG0031 5 ILDLIG-NTPLVRLNRLSPGT------GVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIAL 77 (300)
T ss_pred hHHHhC-CCCcEeecccCCCC------CceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHH
Confidence 556676 89999999988652 689999999999999999999999999998765 46689999999999999
Q ss_pred HHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchh
Q 012341 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM 272 (465)
Q Consensus 193 A~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 272 (465)
|++|+.+|+++++|||+.. ...|.++|++|||+|+.++.....+..+..++ +++.++..+..++++|+.|+.++
T Consensus 78 A~vaa~~Gy~~iivmP~~~---S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a-~el~~~~p~~~~~~~Qf~NpaN~-- 151 (300)
T COG0031 78 AMVAAAKGYRLIIVMPETM---SQERRKLLRALGAEVILTPGAPGNMKGAIERA-KELAAEIPGYAVWLNQFENPANP-- 151 (300)
T ss_pred HHHHHHcCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEcCCCCCchHHHHHHH-HHHHHhCCCceEchhhcCCCccH--
Confidence 9999999999999999953 24466779999999999997433356655544 44455544557788899887765
Q ss_pred HHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEe
Q 012341 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351 (465)
Q Consensus 273 ~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~ 351 (465)
..|+ .-|.+||++|+++.+|+||+++|||||++|++.++| .+|++|+|+|||+++.+.+ .|.
T Consensus 152 ---~aH~---~tT~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~--------~G~--- 214 (300)
T COG0031 152 ---EAHY---ETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLS--------GGE--- 214 (300)
T ss_pred ---HHHH---hhhHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccC--------CCC---
Confidence 4454 444566777887779999999999999999999998 7899999999999986422 121
Q ss_pred eccceeecccccCCCccCcccccccCCCCCCCCch--hhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHH
Q 012341 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEH--SFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALA 429 (465)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~--~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alA 429 (465)
.++-| . |+|..+ ..+....+|+++.|+|+|+++++|+|+++||++++++||++++
T Consensus 215 -----------------g~~~i-~-----GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~ 271 (300)
T COG0031 215 -----------------GPHKI-E-----GIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALA 271 (300)
T ss_pred -----------------CCccc-C-----CCCCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHH
Confidence 12222 2 333332 2344556799999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCEEEEEeCCCCCCCHH
Q 012341 430 YLEKLCPTLADGTKVVVNFSGRGDKDVQ 457 (465)
Q Consensus 430 a~~~l~~~~~~~~~VVvv~tG~g~k~~~ 457 (465)
++++++++++++++||+|++++|++|++
T Consensus 272 aa~~~a~~~~~g~~IVti~pD~G~RYls 299 (300)
T COG0031 272 AALKLAKELPAGKTIVTILPDSGERYLS 299 (300)
T ss_pred HHHHHHHhcCCCCeEEEEECCCcccccC
Confidence 9999999988899999999999999975
No 39
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.8e-48 Score=401.78 Aligned_cols=330 Identities=38% Similarity=0.519 Sum_probs=247.0
Q ss_pred HHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHH
Q 012341 111 ELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGV 190 (465)
Q Consensus 111 ~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~ 190 (465)
++.+++ ..++++|||+++++|++.++ .+.+||+|+|++|||||||+|++.+++..+++.|..++|+++|+||||+
T Consensus 57 ~v~~~~-~l~g~pTPL~r~~~L~~~lg----~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~~~~vtetssGN~G~ 131 (419)
T TIGR01415 57 EVLKRY-AQIGRPTPLIRAKGLEELLG----TPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGAKRLVTETGAGQWGS 131 (419)
T ss_pred HHHHHH-HhcCCCCCeEEccchhhhhC----CCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCCCeEEEecCchHHHH
Confidence 344443 33557999999999998872 2379999999999999999999999999999999887776789999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCH---------------HHHHHHHHHHHHHccC
Q 012341 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL---------------KDATSEAIRDWVTNVE 255 (465)
Q Consensus 191 AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~---------------~da~~~a~~~~~~~~~ 255 (465)
|+|++|+.+|++|+||||+.+......|+.+|+.|||+|+.++...... ..+..++.+... +..
T Consensus 132 alA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~-~~~ 210 (419)
T TIGR01415 132 ALSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYAL-SDE 210 (419)
T ss_pred HHHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHH-hCC
Confidence 9999999999999999998654334467889999999999998532110 002333333322 223
Q ss_pred CceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-----cCCCcEEEEEec
Q 012341 256 TTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-----NDKDVRLIGVEA 330 (465)
Q Consensus 256 ~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-----~~p~~rvigVe~ 330 (465)
+..|++++..| | +..++.++|+|+..|+. ..+..||+||+|+|+|||++|++.+|+ ..+++|||+|||
T Consensus 211 ~~~y~~~~~~n-~-----~~~h~~~ig~Ei~~Ql~-~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep 283 (419)
T TIGR01415 211 DTKYSLGSVLN-H-----VLLHQTVIGLEAKKQME-EAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEP 283 (419)
T ss_pred CCEEEeCCCCc-H-----HHHHHHHHHHHHHHHHH-hcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEee
Confidence 45687777644 2 23678899999988873 233469999999999999999997762 236899999999
Q ss_pred CCCCCCchhhhhhhccCCeEeecc--------ceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCH
Q 012341 331 AGFGLDSGKHAATLSKGEVGVLHG--------ALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTD 402 (465)
Q Consensus 331 ~~~~~~~~~~~~sl~~G~~~~~~~--------~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd 402 (465)
++++. +..|......+ ...+.+ .-...++.++++|+.+++.++....+.+..+.+++.|+|
T Consensus 284 ~~~~~--------l~~g~~~yd~~~~~~~~p~~~~~~l---G~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d 352 (419)
T TIGR01415 284 KACPT--------LTRGEYRYDFGDTAGLTPLLKMYTL---GHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQ 352 (419)
T ss_pred CCChh--------hhcCcccccccccccCCcceeeeec---CCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECH
Confidence 99742 32232110000 000110 011335678999999988876655566666678899999
Q ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccC---CCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 403 DEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTL---ADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 403 ~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~---~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
+|+++++++|+++|||+++|++|++++++++++++. +++++||+++||+|++|.+.+.+++.
T Consensus 353 ~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~vvv~~lsG~G~~d~~~y~~~~~ 417 (419)
T TIGR01415 353 EEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHGLLDLKAYAKYLH 417 (419)
T ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCeEEEEEcCCCCcCCHHHHHHHhc
Confidence 999999999999999999999999999999887543 23347789999999999999988764
No 40
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=9.7e-49 Score=391.22 Aligned_cols=302 Identities=26% Similarity=0.311 Sum_probs=241.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHH
Q 012341 92 LSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLA 171 (465)
Q Consensus 92 ~~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a 171 (465)
+++|.+++. .|.++++ +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+
T Consensus 1 ~~~~~~~~~--------------~i~~~ig-~TPl~~~~~l~~~~------g~~i~~K~E~~nptgS~Kdr~a~~~l~~~ 59 (304)
T cd01562 1 LEDILAAAA--------------RIKPVVR-RTPLLTSPTLSELL------GAEVYLKCENLQKTGSFKIRGAYNKLLSL 59 (304)
T ss_pred ChHHHHHHH--------------HHhCcCC-CCCcccchhhHHHh------CCeEEEEeccCCCcCCcHHHhHHHHHHhc
Confidence 357777776 4788995 99999999999876 67999999999999999999999999888
Q ss_pred HHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 012341 172 KRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (465)
Q Consensus 172 ~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~ 251 (465)
.+.++...|+++|+||||.|+|++|+.+|++|+||||+.. ++.|+++|+.+||+|+.++. +++++...+ +++.
T Consensus 60 ~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~---~~~k~~~l~~~Ga~vi~~~~---~~~~~~~~a-~~la 132 (304)
T cd01562 60 SEEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETA---PAAKVDATRAYGAEVVLYGE---DFDEAEAKA-RELA 132 (304)
T ss_pred CHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCC---CHHHHHHHH-HHHH
Confidence 7766455688999999999999999999999999999875 34578899999999999985 366765444 4444
Q ss_pred HccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEec
Q 012341 252 TNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEA 330 (465)
Q Consensus 252 ~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~ 330 (465)
++ . ..|++++++|+.+ ..+|.+++.|+..| ++ .||+||+|+|+|||++|++.+++ ..+.+|||+|++
T Consensus 133 ~~-~-~~~~~~~~~n~~~-----~~g~~~~~~Ei~~q----~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~ 200 (304)
T cd01562 133 EE-E-GLTFIHPFDDPDV-----IAGQGTIGLEILEQ----VP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEP 200 (304)
T ss_pred Hh-c-CCEEeCCCCCcch-----hccHHHHHHHHHHh----cC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 43 3 3566677765432 25677767666544 44 49999999999999999999998 678999999999
Q ss_pred CCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHH
Q 012341 331 AGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFK 410 (465)
Q Consensus 331 ~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~ 410 (465)
.++. .+..++..|.... .....++++|++.+........+.....+.++.|+|+|++++++
T Consensus 201 ~~~~----~~~~~~~~g~~~~---------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 261 (304)
T cd01562 201 EGAP----AMAQSLAAGKPVT---------------LPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAML 261 (304)
T ss_pred CCCc----hHHHHHHcCCccc---------------CCCCCcccccccCCCchHHHHHHHHHhCCeEEEECHHHHHHHHH
Confidence 9873 4666777665432 12246788888754322222224455679999999999999999
Q ss_pred HHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCC
Q 012341 411 RSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDK 454 (465)
Q Consensus 411 ~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k 454 (465)
+|++++|++++|+||+++++++++.++. ++++||+|+|| |+.
T Consensus 262 ~l~~~eGi~~~pss~~a~a~~~~~~~~~-~~~~vv~i~tG-G~~ 303 (304)
T cd01562 262 LLFEREKLVAEPAGALALAALLSGKLDL-KGKKVVVVLSG-GNI 303 (304)
T ss_pred HHHHHcCceEchhHHHHHHHHHhCcccc-CCCeEEEEecC-CCC
Confidence 9999999999999999999999988765 78899999999 464
No 41
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.9e-48 Score=390.74 Aligned_cols=291 Identities=23% Similarity=0.314 Sum_probs=224.9
Q ss_pred HhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC---C-eEEEEcCCChHHHH
Q 012341 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---T-RIIAETGAGQHGVA 191 (465)
Q Consensus 116 i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~---~-~~Vv~aSsGNhg~A 191 (465)
+.++++ +|||++++.++..+ +.+||+|+|++|||||||||+|++++..+.+.+. . ..||++||||||+|
T Consensus 9 ~~~~ig-~TPLv~l~~l~~~~------~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~a 81 (322)
T PLN02565 9 VTELIG-KTPLVYLNNVVDGC------VARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIG 81 (322)
T ss_pred HHHHhC-CCceEEccccCCCC------CceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHH
Confidence 566775 89999998875432 5799999999999999999999999998877653 1 35889999999999
Q ss_pred HHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCch
Q 012341 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP 271 (465)
Q Consensus 192 lA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 271 (465)
+|++|+.+|++|+||||++. ++.|+.+|+.|||+|+.++.. .+++++.+.+ +++.++ ....|++++++|+.+.
T Consensus 82 lA~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~-~~~~~~~~~a-~~l~~~-~~~~~~~~q~~n~~n~- 154 (322)
T PLN02565 82 LAFMAAAKGYKLIITMPASM---SLERRIILLAFGAELVLTDPA-KGMKGAVQKA-EEILAK-TPNSYILQQFENPANP- 154 (322)
T ss_pred HHHHHHHcCCeEEEEeCCCC---cHHHHHHHHHcCCEEEEeCCC-CCcHHHHHHH-HHHHHh-CCCcEeecccCCHhHH-
Confidence 99999999999999999976 466889999999999999753 2445655444 333333 2235777777654221
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeE
Q 012341 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (465)
Q Consensus 272 ~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~ 350 (465)
..++.++|.|+ ++|+++.||+||+|+|+||+++|++.+++ .+|.+|||+|||+++.. +..|++.
T Consensus 155 ---~~~~~t~a~Ei----~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~--------~~~g~~~ 219 (322)
T PLN02565 155 ---KIHYETTGPEI----WKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAV--------LSGGKPG 219 (322)
T ss_pred ---HHHHHHHHHHH----HHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCcc--------ccCCCCC
Confidence 13456666665 56665579999999999999999999998 78999999999999742 2223221
Q ss_pred eeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHH
Q 012341 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAY 430 (465)
Q Consensus 351 ~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa 430 (465)
++ ..+|+....+. ..+....+++++.|+|+|+++++++|++++|++++|++|+++++
T Consensus 220 -------------------~~-~~~glg~~~~~---~~~~~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laa 276 (322)
T PLN02565 220 -------------------PH-KIQGIGAGFIP---GVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAA 276 (322)
T ss_pred -------------------Cc-cCCCCCCCCCC---CcCCHhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHH
Confidence 22 22455421111 11222456899999999999999999999999999999999999
Q ss_pred HHHhcccC-CCCCEEEEEeCCCCCCCHHH
Q 012341 431 LEKLCPTL-ADGTKVVVNFSGRGDKDVQT 458 (465)
Q Consensus 431 ~~~l~~~~-~~~~~VVvv~tG~g~k~~~~ 458 (465)
+++++++. .++++||+++||+|.||+++
T Consensus 277 a~~~a~~~~~~~~~vV~v~~d~G~ky~~~ 305 (322)
T PLN02565 277 AIKIAKRPENAGKLIVVIFPSFGERYLSS 305 (322)
T ss_pred HHHHHHhcCCCCCeEEEEECCCccccCCc
Confidence 99998654 45789999999999999886
No 42
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=5.1e-48 Score=400.88 Aligned_cols=301 Identities=26% Similarity=0.337 Sum_probs=239.5
Q ss_pred CCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCe
Q 012341 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQ 202 (465)
Q Consensus 123 ~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~ 202 (465)
+|||+++++|++.+ +..+||+|+|++|||||||||++.+++..+.+.|.+ .|+++|+||||+|+|++|+++|++
T Consensus 89 ~TPLv~~~~l~~~l-----G~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~~-~vv~aSsGN~g~alA~~aa~~Gl~ 162 (421)
T PRK07591 89 FTPLVKADRLAREL-----GLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGFT-TVACASTGNLANSVAAHAARAGLD 162 (421)
T ss_pred CCcceEhHHHHHHh-----CCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCCC-EEEEeCCCHHHHHHHHHHHHcCCC
Confidence 79999999999887 236999999999999999999999999999888876 567899999999999999999999
Q ss_pred EEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHH
Q 012341 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (465)
Q Consensus 203 ~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g 282 (465)
|+||||+.. +..|+.+|+.|||+|+.++. +++++...+ +++.++.. ..|+.++ +.+||. .+|+.+++
T Consensus 163 ~~I~vP~~~---~~~k~~~~~~~GA~Vi~v~g---~~d~a~~~a-~~~~~~~~-~~~~~n~--~~~p~~---ieG~~Tia 229 (421)
T PRK07591 163 SCVFIPADL---EAGKIVGTLVYGPTLVAVDG---NYDDVNRLC-SELANEHE-GWGFVNI--NLRPYY---AEGSKTLG 229 (421)
T ss_pred EEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHH-HHHHHhcC-CEEEecC--CCCccc---ccchHHHH
Confidence 999999975 35688999999999999985 466665443 33333322 3455554 346765 37888888
Q ss_pred HHHHHHHHHHhCC-CCCEEEEcCCCchhHHHHhHHhhc--------CCCcEEEEEecCCCCCCchhhhhhhccCCeEeec
Q 012341 283 KETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFVN--------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLH 353 (465)
Q Consensus 283 ~e~~~qi~e~~g~-~~D~vvvpvG~GG~~aGi~~~~~~--------~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~ 353 (465)
+|+.+|+ +. .||+||+|+|+||+++|++.+|+. ++.+|||+||++++. .++++++.|.....
T Consensus 230 ~Ei~eQl----~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~----~~~~~~~~g~~~~~- 300 (421)
T PRK07591 230 YEVAEQL----GWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCS----PIAQAFKEGRDVVK- 300 (421)
T ss_pred HHHHHHc----CCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCC----HHHHHHHcCCCccc-
Confidence 8876554 43 489999999999999999999973 578999999999973 46677777654210
Q ss_pred cceeecccccCCCccCcccccccCCCCCC--CCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Q 012341 354 GALSYLLQNEDGQIIEPHSISAGLDYPGV--GPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYL 431 (465)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~tia~gl~~~~v--g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~ 431 (465)
...++++++++..+.. +.......+...+.++.|+|+|++++++.|++++||+++|++|+++|++
T Consensus 301 -------------~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal 367 (421)
T PRK07591 301 -------------PVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVL 367 (421)
T ss_pred -------------CCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHH
Confidence 1235788888853221 1111122334567899999999999999999999999999999999999
Q ss_pred HHhcc--cCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 432 EKLCP--TLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 432 ~~l~~--~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
+++.+ .+.++++||+++||+|+||++.+.+.++
T Consensus 368 ~~l~~~g~i~~~~~VV~i~tG~G~kd~~~~~~~~~ 402 (421)
T PRK07591 368 KKLVEAGKIDPDEETVVYITGNGLKTLEAVAGYVG 402 (421)
T ss_pred HHHHHhCCCCCCCeEEEEeCCCccCCHHHHHHhcC
Confidence 99876 4668899999999999999999876543
No 43
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=7.7e-48 Score=396.70 Aligned_cols=320 Identities=19% Similarity=0.173 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHH--hhhcCCCCCeEeccccchhhcCCCCCC-CeEEEeeCCCC-CCCCccHHHHHH
Q 012341 91 ALSELESALHKLADDRDFQEELSGIL--RDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLN-HTGAHKINNAVG 166 (465)
Q Consensus 91 ~~~~i~~a~~~~~~~~~~~~~l~~~i--~~~vg~~TPL~~l~~Ls~~l~~~~~~g-~~i~lK~E~~~-pTGSfK~Rga~~ 166 (465)
++++|.+|.. ++ .+.+ .+|||+++++|++.+ | .+||+|+|++| ||||||+||+.+
T Consensus 25 ~~~~~~~a~~--------------~~~~~~~~-~~TPL~~~~~l~~~~------G~~~v~~K~E~~q~ptgSFK~RG~~~ 83 (399)
T PRK08206 25 SQEEAKKARA--------------FHQSFPGY-APTPLVALPDLAAEL------GVGSILVKDESYRFGLNAFKALGGAY 83 (399)
T ss_pred CHHHHHHHHH--------------HHhcCCCC-CCCCCcchHHHHHHh------CCCcEEEecccCcCCCCChHHhhHHH
Confidence 4688888876 47 4567 499999999999987 5 69999999984 999999999988
Q ss_pred HHHHHH--HcCC--------------------CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHh
Q 012341 167 QALLAK--RLGK--------------------TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL 224 (465)
Q Consensus 167 ~~~~a~--~~g~--------------------~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~ 224 (465)
.+..+. +.+. ..+|+++|+||||+|+|++|+.+|++|+||||+.. ++.|+..|+.
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~---~~~k~~~i~~ 160 (399)
T PRK08206 84 AVARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGS---SEERVDAIRA 160 (399)
T ss_pred HHHHHHHHHhCCCcccCCHHHhhhhHHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHH
Confidence 776654 2222 12588999999999999999999999999999975 3558888999
Q ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEec-----cCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCE
Q 012341 225 LGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILG-----SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDV 299 (465)
Q Consensus 225 ~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~-----s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~ 299 (465)
+||+|+.++. +++++...+.+. .++ . ..|+++ ++++.+ ..++.++.+++.|+.+|+.+ .+..||+
T Consensus 161 ~GA~Vi~v~~---~~~~~~~~a~~~-~~~-~-g~~~v~~~~~~~~~~~~---~~~~~G~~t~a~EI~eQl~~-~~~~pD~ 230 (399)
T PRK08206 161 LGAECIITDG---NYDDSVRLAAQE-AQE-N-GWVVVQDTAWEGYEEIP---TWIMQGYGTMADEAVEQLKE-MGVPPTH 230 (399)
T ss_pred cCCEEEEeCC---CHHHHHHHHHHH-HHH-c-CCEEecCccccCccccc---HHHHHHhHHHHHHHHHHHHh-cCCCCCE
Confidence 9999999984 467766555443 322 2 344443 222212 23458899999998877632 1226999
Q ss_pred EEEcCCCchhHHHHhHHhh-c--CCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCccccccc
Q 012341 300 LIACVGGGSNAMGLFHEFV-N--DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAG 376 (465)
Q Consensus 300 vvvpvG~GG~~aGi~~~~~-~--~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~g 376 (465)
||+|+|+||+++|++.+++ . .+.+|||+|||+++. .++.++..|++...+ ..+.|+++|
T Consensus 231 vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~----~l~~s~~~g~~~~~~--------------~~~~tia~g 292 (399)
T PRK08206 231 VFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQAD----CLYQSAVDGKPVAVT--------------GDMDTIMAG 292 (399)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCc----hHHHHHHcCCcEEeC--------------CCCCceecc
Confidence 9999999999999999987 3 358999999999984 467788888765422 124689999
Q ss_pred CCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHH----hcCCcccchHHHHHHHHHHhc-----------ccCCCC
Q 012341 377 LDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSR----LEGIIPALETAHALAYLEKLC-----------PTLADG 441 (465)
Q Consensus 377 l~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~----~eGi~~~p~sa~alAa~~~l~-----------~~~~~~ 441 (465)
+.++.++.....+.+...++++.|+|+|+++++++|++ ++|+++||++|+++|+++++. ..+.++
T Consensus 293 l~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~ 372 (399)
T PRK08206 293 LACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDED 372 (399)
T ss_pred CCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCC
Confidence 87554443222233456799999999999999999996 789999999999999998764 234568
Q ss_pred CEEEEEeCCCCCCCHHHHHHHh
Q 012341 442 TKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 442 ~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
++||+|+|| |++|++.+.+++
T Consensus 373 ~~Vv~iltg-G~~d~~~~~~~~ 393 (399)
T PRK08206 373 SRVLLISTE-GDTDPDRYREIV 393 (399)
T ss_pred CEEEEEECC-CCCCHHHHHHHh
Confidence 899999996 899999998865
No 44
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=3.4e-48 Score=385.08 Aligned_cols=283 Identities=22% Similarity=0.279 Sum_probs=220.4
Q ss_pred HHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC---CeEEEEcCCChHHHH
Q 012341 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVA 191 (465)
Q Consensus 115 ~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhg~A 191 (465)
+|.+.++ +|||+++++|+... +.+||+|+|++|||||||+|++.+++..+.+.+. ...|+++|+||||+|
T Consensus 5 ~i~~~~g-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~a 77 (296)
T PRK11761 5 TLEDTIG-NTPLVKLQRLPPDR------GNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIA 77 (296)
T ss_pred cHHHhcC-CCceEeccccccCC------CCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHH
Confidence 5777886 89999999988764 6799999999999999999999999999887764 246889999999999
Q ss_pred HHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCch
Q 012341 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP 271 (465)
Q Consensus 192 lA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 271 (465)
+|++|+.+|++|+||||+.. ++.|+++|+.+||+|+.++.. .+++++...+ +++.++ . ..+++++++++.+
T Consensus 78 lA~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a-~~l~~~-~-~~~~~~~~~n~~~-- 148 (296)
T PRK11761 78 LAMIAAIKGYRMKLIMPENM---SQERRAAMRAYGAELILVPKE-QGMEGARDLA-LQMQAE-G-EGKVLDQFANPDN-- 148 (296)
T ss_pred HHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHH-HHHHhc-c-CCEecCCCCChhh--
Confidence 99999999999999999975 356889999999999999853 3566654433 333332 2 3455566644321
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeE
Q 012341 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (465)
Q Consensus 272 ~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~ 350 (465)
+..++.++|.|+ ++|++..+|+||+|+|+||+++|++.+++ ..|.+|||||||+++.. + .|-.
T Consensus 149 --~~~~~~t~~~Ei----~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~--------i-~g~~- 212 (296)
T PRK11761 149 --PLAHYETTGPEI----WRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSS--------I-PGIR- 212 (296)
T ss_pred --HHHHhhchHHHH----HHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCc--------C-cCCC-
Confidence 113345666665 45555468999999999999999999998 68999999999998631 1 0100
Q ss_pred eeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHH
Q 012341 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAY 430 (465)
Q Consensus 351 ~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa 430 (465)
+ . +... ...++....+|+++.|+|+|+++++++|++++|+++||++|+++++
T Consensus 213 --------------~-~--~~~~-----------~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laa 264 (296)
T PRK11761 213 --------------R-W--PEEY-----------LPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAA 264 (296)
T ss_pred --------------C-C--CCCc-----------CCcccChhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHH
Confidence 0 0 0000 0112223456899999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCEEEEEeCCCCCCCHHH
Q 012341 431 LEKLCPTLADGTKVVVNFSGRGDKDVQT 458 (465)
Q Consensus 431 ~~~l~~~~~~~~~VVvv~tG~g~k~~~~ 458 (465)
+++++++. ++++||+|+||+|.||+++
T Consensus 265 a~~~~~~~-~~~~vV~v~~d~g~ky~~~ 291 (296)
T PRK11761 265 ALRIAREN-PNAVIVAIICDRGDRYLST 291 (296)
T ss_pred HHHHHHHC-CCCeEEEEECCCCcccCCh
Confidence 99987664 6789999999999999987
No 45
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1.3e-47 Score=395.84 Aligned_cols=330 Identities=39% Similarity=0.506 Sum_probs=248.8
Q ss_pred HHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHH
Q 012341 110 EELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHG 189 (465)
Q Consensus 110 ~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg 189 (465)
+++.++. ..+ ++|||+++++|++.++ .+.+||+|+|++|||||||+|++..++..+++.|..++++++|+||||
T Consensus 66 ~~v~~~~-~~~-~~TPL~~~~~L~~~lg----~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~~~~vtetgsGN~G 139 (427)
T PRK12391 66 EEVREIY-RLW-RPTPLIRARRLEKALG----TPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGIKRLTTETGAGQWG 139 (427)
T ss_pred HHHHHHH-ccc-CCCCeeEchhhHhhhC----CCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCCCEEEEccCchHHH
Confidence 3344444 334 6999999999998872 237999999999999999999999999999999988766668899999
Q ss_pred HHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCC---------------HHHHHHHHHHHHHHcc
Q 012341 190 VATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT---------------LKDATSEAIRDWVTNV 254 (465)
Q Consensus 190 ~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~---------------~~da~~~a~~~~~~~~ 254 (465)
.|+|++|+.+|++|+||||+.+....+.|..+|+.+||+|+.++..... +..++.++.+...+ .
T Consensus 140 ~alA~aaa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~-~ 218 (427)
T PRK12391 140 SALALACALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAK-R 218 (427)
T ss_pred HHHHHHHHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHh-C
Confidence 9999999999999999999854443456788999999999999853111 11244455444332 2
Q ss_pred CCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh----cC-CCcEEEEEe
Q 012341 255 ETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV----ND-KDVRLIGVE 329 (465)
Q Consensus 255 ~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~----~~-p~~rvigVe 329 (465)
.+..|.+++.. ++ +..++.++|.|+..|+. ..+..||+||+|+|+|||++|++.++. .+ +.+|||+||
T Consensus 219 ~~~~y~~~s~~--~~----~~~~~~~ig~Ei~~Ql~-~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVE 291 (427)
T PRK12391 219 PDTKYALGSVL--NH----VLLHQTVIGLEAKKQLE-LAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVE 291 (427)
T ss_pred CCcEEEcCCCC--cH----HHhhHHHHHHHHHHHHH-hcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 34567766532 22 23678889999988874 334579999999999999999998763 24 889999999
Q ss_pred cCCCCCCchhhhhhhccCCeEeecc--------ceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeC
Q 012341 330 AAGFGLDSGKHAATLSKGEVGVLHG--------ALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVT 401 (465)
Q Consensus 330 ~~~~~~~~~~~~~sl~~G~~~~~~~--------~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vs 401 (465)
|++++. |..|......+ ...+.+ .....++.+.++|+.|++..+....+.+....+.+.|+
T Consensus 292 p~~~~~--------l~~g~~~~~~gd~~~~~p~~~~~~l---G~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~ 360 (427)
T PRK12391 292 PAACPT--------LTKGEYAYDFGDTAGLTPLLKMYTL---GHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYP 360 (427)
T ss_pred eccchh--------hccccccccccccccCCccceeEec---CCCCCCccccccccccCCchHHHHHHHhcCceEEEEEC
Confidence 999742 33332211111 001111 01133566788999998877655666666667999999
Q ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhccc---CCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 402 DDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPT---LADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 402 d~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~---~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
|+|+++++++|+++|||+++|++|++++++++++.+ .+++++||+++||+|++|++.+.+++.
T Consensus 361 d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~~~~iv~~lsG~G~~d~~~y~~~l~ 426 (427)
T PRK12391 361 QTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHGLLDLAAYDAYLA 426 (427)
T ss_pred HHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCCHHHHHHHhc
Confidence 999999999999999999999999999999987643 235789999999999999999988764
No 46
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=6.8e-48 Score=384.20 Aligned_cols=289 Identities=25% Similarity=0.307 Sum_probs=222.9
Q ss_pred hhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC---CeEEEEcCCChHHHHHHH
Q 012341 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATAT 194 (465)
Q Consensus 118 ~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhg~AlA~ 194 (465)
++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.+. ..+|+++|+||||+|+|+
T Consensus 3 ~~vg-~TPL~~~~~l~~~~------g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 75 (299)
T TIGR01136 3 ELIG-NTPLVRLNRLAPGC------DARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAM 75 (299)
T ss_pred cccC-CCceEEccccCCCC------CceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHH
Confidence 4675 89999999998865 6799999999999999999999999998887665 246889999999999999
Q ss_pred HHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHH
Q 012341 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV 274 (465)
Q Consensus 195 aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v 274 (465)
+|+.+|++|+||||+.. +..|+.+|+.+||+|+.++.. .+++++.+.+ +++.++ .+.+|++++++++.. +
T Consensus 76 ~a~~~G~~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a-~~~~~~-~~~~~~~~~~~~~~~----~ 145 (299)
T TIGR01136 76 VAAAKGYKLILTMPETM---SLERRKLLRAYGAELILTPAE-EGMKGAIDKA-EELAAE-TNKYVMLDQFENPAN----P 145 (299)
T ss_pred HHHHcCCcEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHH-HHHHhh-CCCeEecCCCCCchh----H
Confidence 99999999999999975 356888999999999999853 3467766555 333333 234566666544321 1
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEeec
Q 012341 275 RDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLH 353 (465)
Q Consensus 275 ~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~ 353 (465)
..++.++|.|+. +|++..||+||+|+|+||+++|++.+++ .+|.+|||+|||+++.. +..+.+..
T Consensus 146 ~~g~~t~~~Ei~----~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~--------~~~~~~~~-- 211 (299)
T TIGR01136 146 EAHYKTTGPEIW----RDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPV--------LSGGEPGP-- 211 (299)
T ss_pred HHHHHHHHHHHH----HhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCcc--------ccCCCCCC--
Confidence 245667777665 4554469999999999999999999998 68999999999999742 11111100
Q ss_pred cceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Q 012341 354 GALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEK 433 (465)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~ 433 (465)
....++ . .+.....+....+++++.|+|+|+++++++|++++|++++|++|++++++++
T Consensus 212 --------------~~~~~i----~---~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~ 270 (299)
T TIGR01136 212 --------------HKIQGI----G---AGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALK 270 (299)
T ss_pred --------------ccCCCC----C---CCCCCccCChhhCCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHH
Confidence 011112 1 1111112334456899999999999999999999999999999999999999
Q ss_pred hcccC-CCCCEEEEEeCCCCCCCHHH
Q 012341 434 LCPTL-ADGTKVVVNFSGRGDKDVQT 458 (465)
Q Consensus 434 l~~~~-~~~~~VVvv~tG~g~k~~~~ 458 (465)
+.++. .++++||+++||+|.||.++
T Consensus 271 ~~~~~~~~~~~vv~i~~d~g~ky~~~ 296 (299)
T TIGR01136 271 LAKRLENADKVIVAILPDTGERYLST 296 (299)
T ss_pred HHHhcCCCCCEEEEEECCCCccccCc
Confidence 87653 34889999999999999885
No 47
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=6.5e-48 Score=382.20 Aligned_cols=282 Identities=21% Similarity=0.284 Sum_probs=219.5
Q ss_pred HhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC---CeEEEEcCCChHHHHH
Q 012341 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVAT 192 (465)
Q Consensus 116 i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhg~Al 192 (465)
|.++++ +|||+++++|+... +.+||+|+|++|||||||+|++.+++..+.+.+. ..+|+++|+||||+|+
T Consensus 2 i~~~ig-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~al 74 (290)
T TIGR01138 2 IEQTVG-NTPLVRLQRMGPEN------GSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIAL 74 (290)
T ss_pred hHHhCC-CCceEEccccccCC------CCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHH
Confidence 456785 99999999998765 6899999999999999999999999999887765 2568899999999999
Q ss_pred HHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchh
Q 012341 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM 272 (465)
Q Consensus 193 A~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 272 (465)
|++|+++|++|+||||+.. ++.|+.+|+.+||+|+.++.. .+++++.+ ..+++.++. .. +++++++|+...
T Consensus 75 A~~a~~~G~~~~i~~p~~~---~~~k~~~~~~~GA~v~~v~~~-~~~~~~~~-~a~~l~~~~-~~-~~~~~~~~~~~~-- 145 (290)
T TIGR01138 75 AMIAALKGYRMKLLMPDNM---SQERKAAMRAYGAELILVTKE-EGMEGARD-LALELANRG-EG-KLLDQFNNPDNP-- 145 (290)
T ss_pred HHHHHHcCCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHH-HHHHHHHhC-CC-CCCCccCCcccH--
Confidence 9999999999999999975 355888899999999999853 34566543 334444332 22 344666543321
Q ss_pred HHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEe
Q 012341 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351 (465)
Q Consensus 273 ~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~ 351 (465)
..++.++|.|+ ++|++..+|+||+|+|+||+++|++.+++ .+|++|||+|||.++.. + .|
T Consensus 146 --~~~~~t~~~Ei----~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~--------~-~g---- 206 (290)
T TIGR01138 146 --YAHYTSTGPEI----WQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSS--------I-PG---- 206 (290)
T ss_pred --HHHhHhHHHHH----HHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCC--------c-cC----
Confidence 12235666665 55555579999999999999999999998 78999999999998632 1 01
Q ss_pred eccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Q 012341 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYL 431 (465)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~ 431 (465)
..++.+++. +. .+....+|+++.|+|+|+++++++|++++|++++|++|++++++
T Consensus 207 ------------------~~~~~~~~~-----~~--~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~ 261 (290)
T TIGR01138 207 ------------------IRRWPTEYL-----PG--IFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAA 261 (290)
T ss_pred ------------------CCCCCCCcC-----Cc--ccChhhCcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHH
Confidence 011111111 11 11233468999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCEEEEEeCCCCCCCHHH
Q 012341 432 EKLCPTLADGTKVVVNFSGRGDKDVQT 458 (465)
Q Consensus 432 ~~l~~~~~~~~~VVvv~tG~g~k~~~~ 458 (465)
+++++++ ++++||+|+||+|.||+++
T Consensus 262 ~~~~~~~-~~~~vv~v~~d~g~ky~~~ 287 (290)
T TIGR01138 262 LRLAREL-PDAVVVAIICDRGDRYLST 287 (290)
T ss_pred HHHHHHC-CCCeEEEEECCCCccccCc
Confidence 9987776 6789999999999999885
No 48
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=8.3e-48 Score=396.97 Aligned_cols=302 Identities=27% Similarity=0.345 Sum_probs=239.6
Q ss_pred CCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCe
Q 012341 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQ 202 (465)
Q Consensus 123 ~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~ 202 (465)
+|||+++++|++.+ +..+||+|+|++|||||||||++.+++..+.+.|.+ .|+++|+||||+|+|++|+.+|++
T Consensus 79 ~TPL~~~~~l~~~~-----G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~-~vv~aSsGN~g~alA~~aa~~G~~ 152 (394)
T PRK08197 79 MTPLLPLPRLGKAL-----GIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGVK-HLAMPTNGNAGAAWAAYAARAGIR 152 (394)
T ss_pred CCCceEhHHHHHHh-----CCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHHHHcCCc
Confidence 79999999999887 236999999999999999999999999999888876 577899999999999999999999
Q ss_pred EEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHH
Q 012341 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (465)
Q Consensus 203 ~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g 282 (465)
|+||||++. ++.|+.+|+.+||+|+.++. +++++.+.+. +..++ . ..|..+++. |||. .++|.+++
T Consensus 153 ~~v~vp~~~---~~~k~~~~~~~GA~Vi~v~~---~~~~~~~~a~-~~~~~-~-g~~~~~~~~--np~~---ieG~~t~a 218 (394)
T PRK08197 153 ATIFMPADA---PEITRLECALAGAELYLVDG---LISDAGKIVA-EAVAE-Y-GWFDVSTLK--EPYR---IEGKKTMG 218 (394)
T ss_pred EEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHH-HHHHh-c-CcccccCCC--Cccc---hhcHHHHH
Confidence 999999976 35688999999999999985 4566654443 33332 2 356666553 5554 37888888
Q ss_pred HHHHHHHHHHhCC-CCCEEEEcCCCchhHHHHhHHhhc--------CCCcEEEEEecCCCCCCchhhhhhhccCCeEeec
Q 012341 283 KETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFVN--------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLH 353 (465)
Q Consensus 283 ~e~~~qi~e~~g~-~~D~vvvpvG~GG~~aGi~~~~~~--------~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~ 353 (465)
+|+.+|+ +. .||+||+|+|+||+++|++.+|+. ++.+|||+||++++. .+.++++.|.....
T Consensus 219 ~Ei~eQl----~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~----~l~~~~~~g~~~~~- 289 (394)
T PRK08197 219 LELAEQL----GWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCA----PIVKAWEEGKEESE- 289 (394)
T ss_pred HHHHHHc----CCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCC----HHHHHHHcCCCccc-
Confidence 8876554 42 499999999999999999999873 388999999999984 46667776653210
Q ss_pred cceeecccccCCCccCcccccccCCCCCCCCchhhh--hccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Q 012341 354 GALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFL--KDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYL 431 (465)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l--~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~ 431 (465)
....++|+++|+..+........+ .+...+.++.|+|+|+++++++|++++||+++|++|+++|++
T Consensus 290 ------------~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~ 357 (394)
T PRK08197 290 ------------FWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAA 357 (394)
T ss_pred ------------cCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHH
Confidence 012457888888654321111111 123457899999999999999999999999999999999999
Q ss_pred HHhccc--CCCCCEEEEEeCCCCCCCHHHHHHHhcC
Q 012341 432 EKLCPT--LADGTKVVVNFSGRGDKDVQTAIKYLQV 465 (465)
Q Consensus 432 ~~l~~~--~~~~~~VVvv~tG~g~k~~~~v~~~~~~ 465 (465)
+++.++ +.++++||+++||+|.||++++...+.+
T Consensus 358 ~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~~~~~~~~ 393 (394)
T PRK08197 358 RQLRESGWLKGDERVVLFNTGSGLKYPDTVPVVVPV 393 (394)
T ss_pred HHHHHcCCcCCCCcEEEEeCCCCcCchhhhhhhcCC
Confidence 998763 5678899999999999999999988764
No 49
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.2e-47 Score=382.17 Aligned_cols=289 Identities=24% Similarity=0.311 Sum_probs=222.2
Q ss_pred hhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC---CeEEEEcCCChHHHHHHH
Q 012341 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATAT 194 (465)
Q Consensus 118 ~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhg~AlA~ 194 (465)
++++ +|||+++++ ...+ +.+||+|+|++|||||||+|++.+++..+.+.+. ..+|+++|+||||+|+|+
T Consensus 3 ~~~g-~TPl~~~~~-~~~~------g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~ 74 (298)
T TIGR01139 3 ELIG-NTPLVRLNR-IEGC------NANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAM 74 (298)
T ss_pred cccC-CCceEEccc-cCCC------CceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHH
Confidence 4675 899999998 4443 6899999999999999999999999998887765 245889999999999999
Q ss_pred HHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHH
Q 012341 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV 274 (465)
Q Consensus 195 aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v 274 (465)
+|+++|++|+||||+.. ++.|+++|+.+||+|+.++.. .+++++.+.+ +++.++....+|+++++.|+.. +
T Consensus 75 ~a~~~Gl~~~i~vp~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~~n~~~----~ 145 (298)
T TIGR01139 75 VAAARGYKLILTMPETM---SIERRKLLKAYGAELVLTPGA-EGMKGAIAKA-EEIAASTPNSYFMLQQFENPAN----P 145 (298)
T ss_pred HHHHcCCeEEEEeCCcc---CHHHHHHHHHcCCEEEEECCC-CCHHHHHHHH-HHHHHhCCCcEEcccccCCccc----H
Confidence 99999999999999975 345788899999999999864 2345555443 4444443333557777654331 1
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEeec
Q 012341 275 RDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLH 353 (465)
Q Consensus 275 ~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~ 353 (465)
..++.+++.|+.+ |++..||+||+|+|+||+++|++.+++ ..|++|||+|||.+++. +..++.
T Consensus 146 ~~g~~t~~~Ei~~----q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~--------~~~~~~---- 209 (298)
T TIGR01139 146 EIHRKTTGPEIWR----DTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPV--------LSGGKP---- 209 (298)
T ss_pred HHHHHHHHHHHHH----HhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcc--------cCCCCC----
Confidence 2456667776654 444469999999999999999999998 67899999999998732 111111
Q ss_pred cceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Q 012341 354 GALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEK 433 (465)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~ 433 (465)
..+..+|+....+. ..+....+++++.|+|+|+++++++|++++|++++|++|++++++++
T Consensus 210 ----------------~~~~~~gl~~~~~~---~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~ 270 (298)
T TIGR01139 210 ----------------GPHKIQGIGAGFIP---KNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALK 270 (298)
T ss_pred ----------------CCCCCCCCCCCCCC---CccChhhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHH
Confidence 01122343321111 12233456899999999999999999999999999999999999999
Q ss_pred hcccCCCCCEEEEEeCCCCCCCHHH
Q 012341 434 LCPTLADGTKVVVNFSGRGDKDVQT 458 (465)
Q Consensus 434 l~~~~~~~~~VVvv~tG~g~k~~~~ 458 (465)
+.+++.++++||+++||+|.||+++
T Consensus 271 ~~~~~~~~~~vv~v~~d~G~ky~~~ 295 (298)
T TIGR01139 271 LAKRPEPDKLIVVILPSTGERYLST 295 (298)
T ss_pred HHHhcCCCCEEEEEECCCCccccCc
Confidence 8877667889999999999999875
No 50
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=3.2e-47 Score=378.05 Aligned_cols=284 Identities=27% Similarity=0.318 Sum_probs=224.0
Q ss_pred CCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC---CeEEEEcCCChHHHHHHHHHHHc
Q 012341 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVATATVCARF 199 (465)
Q Consensus 123 ~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhg~AlA~aa~~~ 199 (465)
+|||+++++|++.+ +.+||+|+|++|||||||+|++.+.+..+.+.++ ..+|+++|+||||+|+|++|+++
T Consensus 2 ~TPl~~~~~l~~~~------g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~ 75 (291)
T cd01561 2 NTPLVRLNRLSPGT------GAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAK 75 (291)
T ss_pred CCCEEEccccCCCC------CCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHc
Confidence 79999999998765 7899999999999999999999999999888776 25688999999999999999999
Q ss_pred CCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCC-CCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHH
Q 012341 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT-ATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (465)
Q Consensus 200 Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~-~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~ 278 (465)
|++|+||||... ++.|+++|+.+||+|+.++... .+.+++.+.+ +++.++. ...|++++++ ||+. ..+|
T Consensus 76 G~~~~i~vp~~~---~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a-~~~~~~~-~~~~~~~~~~--~p~~---~~g~ 145 (291)
T cd01561 76 GYRFIIVMPETM---SEEKRKLLRALGAEVILTPEAEADGMKGAIAKA-RELAAET-PNAFWLNQFE--NPAN---PEAH 145 (291)
T ss_pred CCeEEEEECCCC---CHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHH-HHHHhhC-CCcEEecCCC--CchH---HHHH
Confidence 999999999975 3568889999999999998643 1345655444 3333332 2456665543 3332 2566
Q ss_pred H-HHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccce
Q 012341 279 A-VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGAL 356 (465)
Q Consensus 279 ~-~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~ 356 (465)
. +++.|+.+| ++..||+||+|+|+||+++|++.+++ ..|.+|||+||++++... ..+
T Consensus 146 ~~t~~~Ei~~q----l~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~--------~~~--------- 204 (291)
T cd01561 146 YETTAPEIWEQ----LDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLF--------SGG--------- 204 (291)
T ss_pred HHHHHHHHHHH----cCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCccc--------CCC---------
Confidence 5 777776554 44469999999999999999999998 679999999999997421 100
Q ss_pred eecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcc
Q 012341 357 SYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCP 436 (465)
Q Consensus 357 ~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~ 436 (465)
....++++|+..+.+ ...+....+++++.|+|+|++++++.|++++|++++|++|+++++++++++
T Consensus 205 -----------~~~~~~~~gi~~~~~---~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~~~ 270 (291)
T cd01561 205 -----------PPGPHKIEGIGAGFI---PENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAK 270 (291)
T ss_pred -----------CCCCCcCCCCCCCCC---CCccCchhCceeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHHHH
Confidence 113445566653311 122344467899999999999999999999999999999999999999877
Q ss_pred cCCCCCEEEEEeCCCCCCCHH
Q 012341 437 TLADGTKVVVNFSGRGDKDVQ 457 (465)
Q Consensus 437 ~~~~~~~VVvv~tG~g~k~~~ 457 (465)
++.++++||+|+||+|.||.+
T Consensus 271 ~~~~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 271 RLGPGKTIVTILPDSGERYLS 291 (291)
T ss_pred hcCCCCeEEEEECCCccccCC
Confidence 665788999999999999864
No 51
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.3e-47 Score=387.60 Aligned_cols=293 Identities=25% Similarity=0.357 Sum_probs=226.8
Q ss_pred cCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHc
Q 012341 120 VGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARF 199 (465)
Q Consensus 120 vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~ 199 (465)
+| +|||+++++|+..+ +.+||+|+|++|||||||||++.+++..+.+++.+ +||++|+||||.|+|++|+.+
T Consensus 26 ~G-~TPL~~~~~l~~~~------g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~-~vV~aSsGN~G~AlA~~aa~~ 97 (351)
T PRK06352 26 EG-NTPLIPLPNLSKEL------GVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAE-AVICASTGNTSAAAAAYATRA 97 (351)
T ss_pred CC-CCCeeEcHhhHHHh------CCeEEEEecCCCCccChHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHHHc
Confidence 45 89999999999876 67999999999999999999999999999888865 688999999999999999999
Q ss_pred CCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHH
Q 012341 200 GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHA 279 (465)
Q Consensus 200 Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~ 279 (465)
|++|+||||+... +..|+.+|+.+||+|+.++. +++++.+.+ +++.++ ...|..++ .||+. ..+|.
T Consensus 98 G~~~~ivvp~~~~--~~~k~~~~~a~GA~V~~~~~---~~~~~~~~a-~~~~~~--~~~~~~~~---~n~~~---~~G~~ 163 (351)
T PRK06352 98 GLKAYIVIPEGKV--ALGKLAQAVMYGADIISIQG---NFDEALKSV-RELAET--EAVTLVNS---VNPYR---LEGQK 163 (351)
T ss_pred CCcEEEEEeCCCC--cHHHHHHHHhcCCEEEEECC---CHHHHHHHH-HHHHHh--cCcccccC---CCccc---eeeHH
Confidence 9999999999632 24578889999999999984 466655444 333332 22343332 24443 37888
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCC-----cEEEEEecCCCCCCchhhhhhhccCCeEeec
Q 012341 280 VIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKD-----VRLIGVEAAGFGLDSGKHAATLSKGEVGVLH 353 (465)
Q Consensus 280 ~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~-----~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~ 353 (465)
++|.|+.+|+ +..||+||+|+|+||+++|++.+++ .+|. +|||+|||+++. .+..|++.
T Consensus 164 t~~~EI~~Q~----~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~--------~~~~g~~~--- 228 (351)
T PRK06352 164 TAAFEICEQL----GSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAA--------AIVQGKPI--- 228 (351)
T ss_pred HHHHHHHHHc----CCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCC--------HHHhCCCc---
Confidence 8888876554 5579999999999999999999987 4444 899999999873 13334321
Q ss_pred cceeecccccCCCccCcccccccCCCCCCCCchhhh---hccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHH
Q 012341 354 GALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFL---KDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAY 430 (465)
Q Consensus 354 ~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l---~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa 430 (465)
..++++++++.++.. ..+... .+...+.++.|+|+|+++++++|++++||+++|++|+++|+
T Consensus 229 --------------~~~~~ia~~l~~~~~-~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa 293 (351)
T PRK06352 229 --------------DNPETIATAIRIGNP-ASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAG 293 (351)
T ss_pred --------------CCCCcceeEEEeCCC-CcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHH
Confidence 124567777653321 111111 11123458999999999999999999999999999999999
Q ss_pred HHHhcc--cCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 431 LEKLCP--TLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 431 ~~~l~~--~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
++++.+ .+.++++||+++||+|++|++++.+++.
T Consensus 294 ~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~~~~~~ 329 (351)
T PRK06352 294 VIQHVANGTIKKGETVVCVFTGNGLKDPDTAMSVHE 329 (351)
T ss_pred HHHHHHcCCCCCCCcEEEEeCCCCcCChHHHHhhcC
Confidence 998765 3557889999999999999999876543
No 52
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=6.1e-47 Score=390.46 Aligned_cols=347 Identities=16% Similarity=0.105 Sum_probs=250.7
Q ss_pred hHHHHHHHHHHHHhcCCchHHHH-HHHHHh-hhcCCCCCeEeccccchhhcCC--CCCCCeEEEeeCCCCC-CCCccHHH
Q 012341 89 MYALSELESALHKLADDRDFQEE-LSGILR-DYVGRETPLYFAERLTEHYRRP--NGGGPHIYLKREDLNH-TGAHKINN 163 (465)
Q Consensus 89 ~~~~~~i~~a~~~~~~~~~~~~~-l~~~i~-~~vg~~TPL~~l~~Ls~~l~~~--~~~g~~i~lK~E~~~p-TGSfK~Rg 163 (465)
..+++||.+|..++...--|... +...-. ..+ .+|||+++++|++.++.. ...+.+||+|+|++|| |||||+|+
T Consensus 35 ~~~~~~i~~a~~~~~~~~~~~~~~fp~~~~~~~~-~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRG 113 (431)
T TIGR02035 35 GLKAQEVAEAEARLQRFAPYIAKVFPETAATGGI-IESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARG 113 (431)
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHhCccccccCCc-cCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHH
Confidence 45789999888753211111110 111101 034 489999999998855110 0125699999999999 99999999
Q ss_pred HHHHHHH-----HHHcCC--------------------CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHh
Q 012341 164 AVGQALL-----AKRLGK--------------------TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALN 218 (465)
Q Consensus 164 a~~~~~~-----a~~~g~--------------------~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k 218 (465)
+.+++.. +.+.|. .++||++||||||+++|++|+.+|++|+||||++. +..|
T Consensus 114 A~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a---~~~K 190 (431)
T TIGR02035 114 GIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADA---KQWK 190 (431)
T ss_pred HHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---CHHH
Confidence 9998764 434443 24788999999999999999999999999999976 4678
Q ss_pred HHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHH---hC-
Q 012341 219 VFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEK---WG- 294 (465)
Q Consensus 219 ~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~---~g- 294 (465)
+.+|+.|||+|+.++. +++++...+.+ +.++ ....|++++.+..+ ++.+|.++|.|+.+|+... .+
T Consensus 191 ~~~ir~~GAeVv~~~~---~~~~a~~~A~~-la~~-~~~~~~~d~~n~~n-----~~aG~~T~g~EI~eQl~~~~~~~d~ 260 (431)
T TIGR02035 191 KDKLRSKGVTVVEYES---DYGVAVEEGRK-NADA-DPMCYFVDDENSRN-----LFLGYAVAASRLKKQFDKKGIVVDK 260 (431)
T ss_pred HHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHh-cCCeEECCCCCccc-----HHhhHHHHHHHHHHhhhcccccccc
Confidence 9999999999999984 57777665544 3333 22345555432211 2489999999998877321 11
Q ss_pred CCCCEEEEcCCCchhHHHHhHHhh-c-CCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCccc
Q 012341 295 GKPDVLIACVGGGSNAMGLFHEFV-N-DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHS 372 (465)
Q Consensus 295 ~~~D~vvvpvG~GG~~aGi~~~~~-~-~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~t 372 (465)
..||+|++|+|+||+++|++.+++ . +|++|||+|||+++ ..+..++..|...... ..+......|
T Consensus 261 ~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s----~~~~~s~~~g~~~~~~---------~~~~g~~~~T 327 (431)
T TIGR02035 261 EHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHS----PCMLLGVYTGLHEKIS---------VQDIGIDNIT 327 (431)
T ss_pred CCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCC----HHHHHHHhcCCCcccc---------ccccCCCCCc
Confidence 257899999999999999999998 3 78999999999997 3466777777543210 0010013579
Q ss_pred ccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccC-------------C
Q 012341 373 ISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTL-------------A 439 (465)
Q Consensus 373 ia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~-------------~ 439 (465)
+++|+.+...+.....+.+..+|+++.|+|+|+++++++|++++|+++||++|++++++.++.+.. .
T Consensus 328 ~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~ 407 (431)
T TIGR02035 328 AADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNL 407 (431)
T ss_pred eeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCcccccc
Confidence 999998766554433333447799999999999999999999999999999999999998876431 1
Q ss_pred CCCEEEEEeCCCCCCCHHHHHHH
Q 012341 440 DGTKVVVNFSGRGDKDVQTAIKY 462 (465)
Q Consensus 440 ~~~~VVvv~tG~g~k~~~~v~~~ 462 (465)
++.+.+++.||++..-.+...++
T Consensus 408 ~~~~~~~~~tg~~~~p~~~~~~~ 430 (431)
T TIGR02035 408 NNATHVVWATGGGMVPEEEMEAY 430 (431)
T ss_pred CCCeEEEEecCCCCCCHHHHHhh
Confidence 46688999999776655555544
No 53
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=5.6e-47 Score=387.76 Aligned_cols=334 Identities=17% Similarity=0.151 Sum_probs=244.3
Q ss_pred CCccCCCCccccccchhHHHHHHHHHHHHhcCCchHHHHHHHHHhhh----------------cCCCCCeEeccccchhh
Q 012341 73 FGRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDY----------------VGRETPLYFAERLTEHY 136 (465)
Q Consensus 73 ~~~~~~~gG~~~P~~~~~~~~~i~~a~~~~~~~~~~~~~l~~~i~~~----------------vg~~TPL~~l~~Ls~~l 136 (465)
|-.||+---..-|- ++++|.+|..+ |+++ + .+|||+++++|++.+
T Consensus 5 ~~~~~~~~~~~~~~----~~~~i~~a~~~--------------i~~~~~~~~~~~~~~~~~~~~-~~TPLv~~~~ls~~~ 65 (404)
T cd06447 5 NPNYGKPAEALAPL----SREDIFDAEAR--------------LKRFAPYIAKVFPETAASHGI-IESPLLPIPRMKQAL 65 (404)
T ss_pred CCCCCchhhccCCC----CHHHHHHHHHH--------------HhhcchhhhhhCccccccCCc-cCCCceehHHHHHHh
Confidence 34455544344443 58899998874 5665 6 489999999999876
Q ss_pred cCC--CCCCCeEEEeeCCCCC-CCCccHHHHHHHHHH-----HHHcCC--------------------CeEEEEcCCChH
Q 012341 137 RRP--NGGGPHIYLKREDLNH-TGAHKINNAVGQALL-----AKRLGK--------------------TRIIAETGAGQH 188 (465)
Q Consensus 137 ~~~--~~~g~~i~lK~E~~~p-TGSfK~Rga~~~~~~-----a~~~g~--------------------~~~Vv~aSsGNh 188 (465)
+.. ++.+.+||+|+|++|| |||||||++++++.. +.+.|. ..+||++|||||
T Consensus 66 g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~ 145 (404)
T cd06447 66 EKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNL 145 (404)
T ss_pred ccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHH
Confidence 100 0013799999999999 999999999998764 333333 247899999999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCC
Q 012341 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (465)
Q Consensus 189 g~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~ 268 (465)
|+|+|++|+.+|++|+||||++. ++.|+.+|+.|||+|+.++. +++++...+.+ +.++.. ..|++++++ +
T Consensus 146 G~alA~~a~~~G~~~~IvvP~~~---~~~K~~~ira~GAeVv~v~~---~~~~a~~~a~~-la~~~~-~~~~v~~~n--~ 215 (404)
T cd06447 146 GLSIGIMAAALGFKVTVHMSADA---KQWKKDKLRSKGVTVVEYET---DYSKAVEEGRK-QAAADP-MCYFVDDEN--S 215 (404)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHCCCEEEEECC---CHHHHHHHHHH-HHHHCC-CeEeCCCCC--c
Confidence 99999999999999999999976 46788999999999999974 46676655433 333322 345555532 2
Q ss_pred CchhHHhhHHHHHHHHHHHHHHH---HhC-CCCCEEEEcCCCchhHHHHhHHhh-c-CCCcEEEEEecCCCCCCchhhhh
Q 012341 269 PYPMMVRDFHAVIGKETRRQALE---KWG-GKPDVLIACVGGGSNAMGLFHEFV-N-DKDVRLIGVEAAGFGLDSGKHAA 342 (465)
Q Consensus 269 p~~~~v~~~~~~~g~e~~~qi~e---~~g-~~~D~vvvpvG~GG~~aGi~~~~~-~-~p~~rvigVe~~~~~~~~~~~~~ 342 (465)
| .+.++|.|+|.|+.+|+-+ ..+ ..||+||+|+|+||+++|++.+++ . .|+++||+|||++++ .+..
T Consensus 216 ~---~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap----~~~~ 288 (404)
T cd06447 216 R---DLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSP----CMLL 288 (404)
T ss_pred h---hHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCCh----HHHH
Confidence 2 2358999999998877632 111 136689999999999999999998 3 788999999999873 4556
Q ss_pred hhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccc
Q 012341 343 TLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPAL 422 (465)
Q Consensus 343 sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p 422 (465)
+++.|...... ..+.-...+|+++|+.++..+.....+.+..+|+++.|+|+|+++++++|++++|+++||
T Consensus 289 s~~ag~~~~~~---------~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vep 359 (404)
T cd06447 289 GMATGLHDKIS---------VQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEP 359 (404)
T ss_pred HHHcCCCcccc---------ccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeH
Confidence 77777553211 000001357999999865544433223345679999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcccC--------C---CCCEEEEEeCCC
Q 012341 423 ETAHALAYLEKLCPTL--------A---DGTKVVVNFSGR 451 (465)
Q Consensus 423 ~sa~alAa~~~l~~~~--------~---~~~~VVvv~tG~ 451 (465)
++|+++|+++++.++. + +..+-+++.||+
T Consensus 360 SgAa~lAAl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (404)
T cd06447 360 SAAAGFTGPAQVLSEAEGKRYVRLGYRMENATHIVWATGG 399 (404)
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCccccccCceEEEEccCC
Confidence 9999999999986532 1 334557788874
No 54
>PLN03013 cysteine synthase
Probab=100.00 E-value=7.8e-47 Score=386.59 Aligned_cols=293 Identities=21% Similarity=0.276 Sum_probs=226.0
Q ss_pred HHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC---C-eEEEEcCCChHHH
Q 012341 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---T-RIIAETGAGQHGV 190 (465)
Q Consensus 115 ~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~---~-~~Vv~aSsGNhg~ 190 (465)
.+.+.+| +|||++++.+++.. +.+||+|+|++|||||||||+|.+++..+++.|. + .+||++||||||+
T Consensus 116 ~i~~~iG-~TPLv~l~~l~~~~------g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ 188 (429)
T PLN03013 116 NVSQLIG-KTPMVYLNSIAKGC------VANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGI 188 (429)
T ss_pred HHHhcCC-CCCeEECccccccc------CCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHH
Confidence 4677786 89999999988654 6799999999999999999999999998887664 2 4589999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCc
Q 012341 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (465)
Q Consensus 191 AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (465)
|+|++|+.+|++++||||+.. ++.|+.+|+.|||+|+.++.. ..++++.+.+ +++.++. ...|+++|+.|+ +
T Consensus 189 ALA~~a~~~G~~~~VvvP~~~---s~~K~~~ira~GAeVi~v~~~-~~~~~a~~~A-~ela~~~-~g~~~~~qy~Np--~ 260 (429)
T PLN03013 189 GLAFIAASRGYRLILTMPASM---SMERRVLLKAFGAELVLTDPA-KGMTGAVQKA-EEILKNT-PDAYMLQQFDNP--A 260 (429)
T ss_pred HHHHHHHHcCCCEEEEECCCC---cHHHHHHHHHcCCEEEEECCC-CChHHHHHHH-HHHHhhc-CCeEeCCCCCCH--H
Confidence 999999999999999999976 456888999999999999754 3345555444 3333332 235676776442 2
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCe
Q 012341 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (465)
Q Consensus 271 ~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~ 349 (465)
. +..++.++|.|+ ++|+++.+|+||+|+|+||+++|++.+++ .+|++|||||||+++.. +..|++
T Consensus 261 n--~~ah~~ttg~EI----~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~--------l~~g~~ 326 (429)
T PLN03013 261 N--PKIHYETTGPEI----WDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDI--------LSGGKP 326 (429)
T ss_pred H--HHHHHHHHHHHH----HHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCch--------hhCCCC
Confidence 2 223555555554 56666679999999999999999999998 68999999999999742 222322
Q ss_pred EeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHH
Q 012341 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALA 429 (465)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alA 429 (465)
. + +..+|++...+ ...+....+|+++.|+|+|+++++++|++++|++++|++|++++
T Consensus 327 ~-------------------~-~~i~Glg~~~i---p~~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAala 383 (429)
T PLN03013 327 G-------------------P-HKIQGIGAGFI---PKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAA 383 (429)
T ss_pred C-------------------C-cccCcccCCcC---CHhHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHH
Confidence 1 1 22345543222 12234456799999999999999999999999999999999999
Q ss_pred HHHHhcccCC-CCCEE-EEEeCCCCCCCHHHH
Q 012341 430 YLEKLCPTLA-DGTKV-VVNFSGRGDKDVQTA 459 (465)
Q Consensus 430 a~~~l~~~~~-~~~~V-Vvv~tG~g~k~~~~v 459 (465)
++++++++.. ++++| +++++++|++|.+..
T Consensus 384 Aalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 384 AAIKVAKRPENAGKLIAVSLFASGRDIYTPRC 415 (429)
T ss_pred HHHHHhhhccCCCCEEEEEEcCCCchhchhhh
Confidence 9999876433 46665 567778899999885
No 55
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=7.8e-47 Score=384.68 Aligned_cols=293 Identities=27% Similarity=0.360 Sum_probs=228.2
Q ss_pred hcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHH
Q 012341 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (465)
Q Consensus 119 ~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~ 198 (465)
.+| +|||+++++|+..+ +.+||+|+|++|||||||||++.+++..+.+.+.+ +||++||||||.|+|++|+.
T Consensus 28 ~~g-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~-~iv~aSsGN~g~alA~~a~~ 99 (353)
T PRK07409 28 GEG-NTPLIPAPNLSELL------GVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAK-AVICASTGNTSASAAAYAAR 99 (353)
T ss_pred CCC-CCCEEEchhhHHHh------CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHHH
Confidence 455 89999999998876 67999999999999999999999999999887765 68899999999999999999
Q ss_pred cCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHH
Q 012341 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (465)
Q Consensus 199 ~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~ 278 (465)
+|++|+||||+... +..|+++|+.+||+|+.++. +++++.+. .+++.++. . .|..++ .||+. ..+|
T Consensus 100 ~G~~~~ivvP~~~~--~~~k~~~~~~~GA~Vi~~~~---~~~~~~~~-a~~l~~~~-~-~~~~~~---~n~~~---~~g~ 165 (353)
T PRK07409 100 AGLKAFVLIPEGKI--ALGKLAQAVMYGAEIIQIDG---NFDDALEI-VRELAEKY-P-VTLVNS---VNPYR---IEGQ 165 (353)
T ss_pred cCCCEEEEEcCCCC--chhhHHHHHhcCCEEEEECC---CHHHHHHH-HHHHHHhc-C-ceecCC---CCchh---hhhH
Confidence 99999999999632 24577889999999999984 46776544 34444332 2 444433 24443 3688
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-c------CCCcEEEEEecCCCCCCchhhhhhhccCCeEe
Q 012341 279 AVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351 (465)
Q Consensus 279 ~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~------~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~ 351 (465)
.++|.|+.+|+ +..||+||+|+|+||+++|++.+++ . .+.+|||+|||.++. .+..|++.
T Consensus 166 ~t~~~EI~~q~----~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~--------~~~~g~~~- 232 (353)
T PRK07409 166 KTAAFEIVDAL----GDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAA--------PIVRGEPV- 232 (353)
T ss_pred HHHHHHHHHHh----CCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCC--------hHhhCCcC-
Confidence 88888876554 4469999999999999999998886 2 235899999999863 22233321
Q ss_pred eccceeecccccCCCccCcccccccCCCCCCCCchh---hhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHH
Q 012341 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS---FLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL 428 (465)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~---~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~al 428 (465)
..+.+++++++.+. ..... ...+...++++.|+|+|++++++++++++|++++|++|+++
T Consensus 233 ----------------~~~~ti~~~l~~~~-~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~al 295 (353)
T PRK07409 233 ----------------KNPETIATAIRIGN-PASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASV 295 (353)
T ss_pred ----------------CCCcceeeeeecCC-CCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHH
Confidence 12467887776432 11211 11233456889999999999999999999999999999999
Q ss_pred HHHHHhccc--CCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 429 AYLEKLCPT--LADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 429 Aa~~~l~~~--~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
++++++.++ +.++++||+++||+|+||++++.+.+
T Consensus 296 aa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~~~~~ 332 (353)
T PRK07409 296 AGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTAIKQA 332 (353)
T ss_pred HHHHHHHHcCCCCCCCcEEEEecCccccchHHHHhhc
Confidence 999887654 56788999999999999999987654
No 56
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.5e-46 Score=377.84 Aligned_cols=291 Identities=24% Similarity=0.279 Sum_probs=223.5
Q ss_pred HhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC----CeEEEEcCCChHHHH
Q 012341 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVA 191 (465)
Q Consensus 116 i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~----~~~Vv~aSsGNhg~A 191 (465)
+.++++ +|||+++++++... +.+||+|+|++|||||||+|++.+++..+.+.|. ..+||++|+||||+|
T Consensus 11 ~~~~~g-~TPl~~l~~l~~~~------g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~a 83 (323)
T PLN00011 11 VTELIG-NTPMVYLNNIVDGC------VARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIG 83 (323)
T ss_pred HHHHhC-CCceEEccccCCCC------CceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHH
Confidence 345675 89999999887543 5799999999999999999999999999988763 246889999999999
Q ss_pred HHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCch
Q 012341 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP 271 (465)
Q Consensus 192 lA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 271 (465)
+|++|+.+|++|+||||+.. ++.|+++|+.+||+|+.++.. ...++..+++ +++.++ ....|++++++|+.+.
T Consensus 84 lA~~a~~~G~~~~ivvp~~~---~~~k~~~i~~~GA~V~~~~~~-~~~~~~~~~a-~~l~~~-~~~~~~~~~~~n~~n~- 156 (323)
T PLN00011 84 LACIGAARGYKVILVMPSTM---SLERRIILRALGAEVHLTDQS-IGLKGMLEKA-EEILSK-TPGGYIPQQFENPANP- 156 (323)
T ss_pred HHHHHHHcCCeEEEEeCCCC---CHHHHHHHHHcCCEEEEECCC-cChHHHHHHH-HHHHHh-CCCeEEeccccCCccH-
Confidence 99999999999999999975 357889999999999999853 2333334333 333332 2236777777654321
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeE
Q 012341 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (465)
Q Consensus 272 ~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~ 350 (465)
..++.++|.|+. +|.++.||+||+|+|+||+++|++.+++ .+|++|||||||+++.. +..+++
T Consensus 157 ---~~~~~t~~~EI~----~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~--------~~~~~~- 220 (323)
T PLN00011 157 ---EIHYRTTGPEIW----RDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAV--------LSGGQP- 220 (323)
T ss_pred ---HHHHHHHHHHHH----HhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcc--------cCCCCC-
Confidence 134566666665 4444479999999999999999999998 68999999999998742 222221
Q ss_pred eeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHH
Q 012341 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAY 430 (465)
Q Consensus 351 ~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa 430 (465)
..++++|++.+.+ ...+....+++++.|+|+|+++++++|++++|++++|++|+++++
T Consensus 221 -------------------~~~~~~gl~~~~~---~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laa 278 (323)
T PLN00011 221 -------------------GPHLIQGIGSGII---PFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAA 278 (323)
T ss_pred -------------------CCCCCCCCCCCCC---CcccChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHH
Confidence 1234555543211 112233456889999999999999999999999999999999999
Q ss_pred HHHhcccC-CCCCEEEEEeCCCCCCCHHH
Q 012341 431 LEKLCPTL-ADGTKVVVNFSGRGDKDVQT 458 (465)
Q Consensus 431 ~~~l~~~~-~~~~~VVvv~tG~g~k~~~~ 458 (465)
+++++++. .++++||+|++++|+||.++
T Consensus 279 a~~~~~~~~~~~~~vv~i~~d~G~ky~~~ 307 (323)
T PLN00011 279 ALKVAKRPENAGKLIVVIFPSGGERYLST 307 (323)
T ss_pred HHHHHHhccCCCCeEEEEECCCccccCCh
Confidence 99887543 35789999998899999886
No 57
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=8.9e-47 Score=384.08 Aligned_cols=293 Identities=20% Similarity=0.305 Sum_probs=222.3
Q ss_pred HHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC----CeEEEEcCCChHHH
Q 012341 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGV 190 (465)
Q Consensus 115 ~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~----~~~Vv~aSsGNhg~ 190 (465)
.+...+| +|||+++++++..+ +.+||+|+|++|||||||||++++++..+.+.|. ..+||++|+||||+
T Consensus 52 ~v~~~ig-~TPl~~l~~l~~~~------g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~ 124 (368)
T PLN02556 52 DASQLIG-KTPLVYLNKVTEGC------GAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGI 124 (368)
T ss_pred hHHHhcC-CCccEEcccccccc------CCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHH
Confidence 4566776 89999999988654 6899999999999999999999999999887753 24688999999999
Q ss_pred HHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCc
Q 012341 191 ATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (465)
Q Consensus 191 AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (465)
|+|++|+.+|++|+||||+.. +..|+.+|+.|||+|+.++.. ........++.+ +.++.. ..|+++|++|+.
T Consensus 125 alA~~a~~~G~~~~ivvp~~~---~~~k~~~lr~~GA~Vi~~~~~-~~~~~~~~~a~~-l~~~~~-~~~~~~q~~np~-- 196 (368)
T PLN02556 125 SLAFMAAMKGYKMILTMPSYT---SLERRVTMRAFGAELVLTDPT-KGMGGTVKKAYE-LLESTP-DAFMLQQFSNPA-- 196 (368)
T ss_pred HHHHHHHHcCCCEEEEECCCC---CHHHHHHHHHcCCEEEEECCC-CCccHHHHHHHH-HHHhcC-CCCccCCCCCHH--
Confidence 999999999999999999975 356888999999999999742 222333433332 233322 345566664422
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCe
Q 012341 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (465)
Q Consensus 271 ~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~ 349 (465)
. +..++.++|.|+ ++|.++.+|+||+|+||||+++|++.+++ .+|++|||||||+++.. +..|++
T Consensus 197 ~--~~~g~~ttg~EI----~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~--------~~~g~~ 262 (368)
T PLN02556 197 N--TQVHFETTGPEI----WEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNV--------LNGGKP 262 (368)
T ss_pred H--HHHHHHHHHHHH----HHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCcc--------ccCCCC
Confidence 1 113555666665 45554579999999999999999999998 68999999999998732 333332
Q ss_pred EeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHH
Q 012341 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALA 429 (465)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alA 429 (465)
. ++.+ .|++. +.....+....+++++.|+|+|+++++++|++++|+++++++|++++
T Consensus 263 ~-------------------~~~i-~g~g~---~~~p~~~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~ 319 (368)
T PLN02556 263 G-------------------PHHI-TGNGV---GFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTV 319 (368)
T ss_pred C-------------------Ceee-eeccC---CCCccccchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHH
Confidence 1 1222 23321 11112234456789999999999999999999999999999999998
Q ss_pred HHHHhcccC-CCCCEEEEEeCCCCCCCHHHH
Q 012341 430 YLEKLCPTL-ADGTKVVVNFSGRGDKDVQTA 459 (465)
Q Consensus 430 a~~~l~~~~-~~~~~VVvv~tG~g~k~~~~v 459 (465)
++++++++. .++++||+|++|+|.||++++
T Consensus 320 aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~ 350 (368)
T PLN02556 320 AALRLAKMPENKGKLIVTVHPSFGERYLSSV 350 (368)
T ss_pred HHHHHhhhccCCcCEEEEEECCCCcccCChh
Confidence 888887653 257899999999999998863
No 58
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=8.6e-47 Score=389.78 Aligned_cols=299 Identities=27% Similarity=0.357 Sum_probs=235.5
Q ss_pred cCCCCCeEeccccchhhcCCCCCCC-eEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHH
Q 012341 120 VGRETPLYFAERLTEHYRRPNGGGP-HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (465)
Q Consensus 120 vg~~TPL~~l~~Ls~~l~~~~~~g~-~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~ 198 (465)
.| +|||+++++|++.+ |. +||+|+|++|||||||||++..++..+++.+.+ +|+++||||||.|+|++|++
T Consensus 65 ~G-~TPLv~~~~l~~~~------g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~~-~vv~aSsGN~g~alA~~aa~ 136 (397)
T PRK06260 65 EG-GTPLYRCPNLEKEL------GVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVK-TVACASTGNTSASLAAYAAR 136 (397)
T ss_pred CC-CCCeEEchhhHHHh------CCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHHHH
Confidence 44 89999999999877 54 999999999999999999999999999888876 67789999999999999999
Q ss_pred cCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHH
Q 012341 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (465)
Q Consensus 199 ~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~ 278 (465)
+|++|+||||+... +..|+.+++.+||+|+.++. +++++.+.+ ++..++ ...|.++++ ||+. .++|
T Consensus 137 ~G~~~~i~vP~~~~--~~~k~~~~~~~GA~vi~v~~---~~~~~~~~a-~~~~~~--~g~y~~~~~---np~~---~~G~ 202 (397)
T PRK06260 137 AGLKCYVLLPAGKV--ALGKLAQALLHGAKVLEVDG---NFDDALDMV-VELAKE--GKIYLLNSI---NPFR---LEGQ 202 (397)
T ss_pred cCCcEEEEEeCCCc--cHHHHHHHHhcCCEEEEECC---cHHHHHHHH-HHHHhh--CCEEeecCC---Cchh---hcch
Confidence 99999999998621 35577889999999999985 466765443 333333 246776654 5664 3788
Q ss_pred HHHHHHHHHHHHHHhCC-CCCEEEEcCCCchhHHHHhHHhh-c------CCCcEEEEEecCCCCCCchhhhhhhccCCeE
Q 012341 279 AVIGKETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFV-N------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (465)
Q Consensus 279 ~~~g~e~~~qi~e~~g~-~~D~vvvpvG~GG~~aGi~~~~~-~------~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~ 350 (465)
.++++|+.+|+ +. .||+||+|+|+||+++|++.+|+ . .+.+|||+||++++. .+..++..|...
T Consensus 203 ~t~a~Ei~eQl----~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~----~~~~a~~~g~~~ 274 (397)
T PRK06260 203 KTIGFEIADQL----GWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAA----PIVEAIKKGKDE 274 (397)
T ss_pred hhHHHHHHHHh----CCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCc----HHHHHHHcCCCc
Confidence 88888886665 43 59999999999999999999987 2 245799999999984 466677776543
Q ss_pred eeccceeecccccCCCccCcccccccCCCCC--CCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHH
Q 012341 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPG--VGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL 428 (465)
Q Consensus 351 ~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~--vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~al 428 (465)
.. ....+.|+++++..+. ..+......+...+.++.|+|+|+++++++|++++|++++|++|+++
T Consensus 275 ~~-------------~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaal 341 (397)
T PRK06260 275 IE-------------PVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASV 341 (397)
T ss_pred cc-------------ccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHH
Confidence 10 0123578888875421 11111112223447899999999999999999999999999999999
Q ss_pred HHHHHhccc--CCCCCEEEEEeCCCCCCCHHHHHH
Q 012341 429 AYLEKLCPT--LADGTKVVVNFSGRGDKDVQTAIK 461 (465)
Q Consensus 429 Aa~~~l~~~--~~~~~~VVvv~tG~g~k~~~~v~~ 461 (465)
|++++++++ +.++++||+++||+|.||++.+.+
T Consensus 342 Aa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~~~~ 376 (397)
T PRK06260 342 AGLIKLVEEGVIDKDERVVCITTGHLLKDPDAAIK 376 (397)
T ss_pred HHHHHHHHcCCCCCCCeEEEEeCCCccCchHHHHh
Confidence 999998764 567899999999999999998754
No 59
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=9.6e-47 Score=380.14 Aligned_cols=294 Identities=30% Similarity=0.411 Sum_probs=229.3
Q ss_pred hcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHH
Q 012341 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (465)
Q Consensus 119 ~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~ 198 (465)
.+| +|||+++++|++.+ ++.+||+|+|++|||||||+|++.+++..+.+.+.+ +|+++|+||||.|+|++|+.
T Consensus 19 ~~g-~TPl~~~~~l~~~~-----g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~-~vv~~SsGN~g~alA~~a~~ 91 (324)
T cd01563 19 GEG-NTPLVRAPRLGERL-----GGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGVK-AVACASTGNTSASLAAYAAR 91 (324)
T ss_pred CCC-CCceeechhhHhhc-----CCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCCC-EEEEeCCCHHHHHHHHHHHH
Confidence 344 89999999999876 358999999999999999999999999999887755 67899999999999999999
Q ss_pred cCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHH
Q 012341 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (465)
Q Consensus 199 ~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~ 278 (465)
+|++|+||||++. ++.|+++|+.+||+|+.++. +++++...+ +++.++ . .+++++++|+. . ..+|
T Consensus 92 ~G~~~~ivvp~~~---~~~k~~~l~~~GA~Vi~~~~---~~~~~~~~a-~~~~~~-~--~~~~~~~~n~~--~---~~g~ 156 (324)
T cd01563 92 AGIKCVVFLPAGK---ALGKLAQALAYGATVLAVEG---NFDDALRLV-RELAEE-N--WIYLSNSLNPY--R---LEGQ 156 (324)
T ss_pred cCCceEEEEeCCC---CHHHHHHHHHcCCEEEEECC---cHHHHHHHH-HHHHHh-c--CeeccCCCCcc--e---ecch
Confidence 9999999999976 35688899999999999975 456665433 333333 2 34445554332 2 2677
Q ss_pred HHHHHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHhHHhh-c------CCCcEEEEEecCCCCCCchhhhhhhccCCeE
Q 012341 279 AVIGKETRRQALEKWG-GKPDVLIACVGGGSNAMGLFHEFV-N------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (465)
Q Consensus 279 ~~~g~e~~~qi~e~~g-~~~D~vvvpvG~GG~~aGi~~~~~-~------~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~ 350 (465)
.+++.|+.+|+ + ..+|+||+|+|+||+++|++.+++ . ++.+|||||||.++. .+..++..|...
T Consensus 157 ~t~~~Ei~~q~----~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~----~~~~~~~~g~~~ 228 (324)
T cd01563 157 KTIAFEIAEQL----GWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAA----PIVRAFKEGKDD 228 (324)
T ss_pred hhhHHHHHHHc----CCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCC----HHHHHHHcCCCc
Confidence 78888776554 3 269999999999999999999987 2 268999999999873 456667766432
Q ss_pred eeccceeecccccCCCccCcccccccCCCCCCC--CchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHH
Q 012341 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVG--PEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL 428 (465)
Q Consensus 351 ~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg--~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~al 428 (465)
. ......+++++|++.+... +....+.+...++++.|+|+|++++++++++++|++++|++|+++
T Consensus 229 ~-------------~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~al 295 (324)
T cd01563 229 I-------------EPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASL 295 (324)
T ss_pred c-------------CcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHH
Confidence 1 0123457888887643221 111112334568999999999999999999999999999999999
Q ss_pred HHHHHhccc--CCCCCEEEEEeCCCCCCC
Q 012341 429 AYLEKLCPT--LADGTKVVVNFSGRGDKD 455 (465)
Q Consensus 429 Aa~~~l~~~--~~~~~~VVvv~tG~g~k~ 455 (465)
++++++.++ +.++++||+|+||+|.||
T Consensus 296 aa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 296 AGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred HHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 999998754 457889999999999886
No 60
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=4.6e-46 Score=378.40 Aligned_cols=292 Identities=26% Similarity=0.345 Sum_probs=226.6
Q ss_pred hhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHH
Q 012341 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCA 197 (465)
Q Consensus 118 ~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~ 197 (465)
-.+| +|||+++++|++.+ +.+||+|+|++|||||||||++.+++..+++++.+ +||++|+||||.|+|++|+
T Consensus 24 l~~G-~TPl~~l~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~~-~vV~aSsGN~G~alA~~aa 95 (352)
T PRK06721 24 LMEG-NTPLIPLLNISKQL------GIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGSE-AIICASTGNTSASAAAYAA 95 (352)
T ss_pred cCcC-CCCeeEchhhHHHh------CCeEEEEecCCCCccchHHHHHHHHHHHHHHCCCC-EEEEECCcHHHHHHHHHHH
Confidence 3455 89999999998876 67999999999999999999999999999888865 6889999999999999999
Q ss_pred HcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhH
Q 012341 198 RFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDF 277 (465)
Q Consensus 198 ~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~ 277 (465)
.+|++|+||||+... ++.|+++|+.+||+|+.++. +++++...+ +++.++ . ..|.+++ .||+. ..+
T Consensus 96 ~~G~~~~vvvp~~~~--~~~k~~~~~~~GA~V~~~~~---~~~~~~~~a-~~~~~~-~-~~~~~~~---~n~~~---~~G 161 (352)
T PRK06721 96 RLGMKCIIVIPEGKI--AHGKLAQAVAYGAEIISIEG---NFDDALKAV-RNIAAE-E-PITLVNS---VNPYR---IEG 161 (352)
T ss_pred HCCCcEEEEECCCCC--CHHHHHHHHHcCCEEEEECC---CHHHHHHHH-HHHHHh-C-CceeccC---CCchh---hhh
Confidence 999999999998632 24578889999999999984 466655443 433333 2 2444432 24443 368
Q ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHH----hh-c-CCCcEEEEEecCCCCCCchhhhhhhccCCeEe
Q 012341 278 HAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHE----FV-N-DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351 (465)
Q Consensus 278 ~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~----~~-~-~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~ 351 (465)
|.+++.|+.+|+ +..||+||+|+|+||+++|++.+ ++ . .|.+|||||||+++. .+..|..
T Consensus 162 ~~t~~~Ei~eq~----~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~--------~~~~g~~-- 227 (352)
T PRK06721 162 QKTAAFEICDQL----QRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAA--------AIVKGHV-- 227 (352)
T ss_pred hhhHHHHHHHHh----CCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCC--------hHhhCCc--
Confidence 888888876554 44699999999999999986544 33 3 489999999999873 2333321
Q ss_pred eccceeecccccCCCccCcccccccCCCCCCCCch--hhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHH
Q 012341 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEH--SFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALA 429 (465)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~--~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alA 429 (465)
+..++++++++..+...... ....+...++++.|+|+|+++++++|++++|++++|++|+++|
T Consensus 228 ---------------~~~~~tia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaala 292 (352)
T PRK06721 228 ---------------IDEPETIATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLA 292 (352)
T ss_pred ---------------CCCCCceeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHH
Confidence 12356788877643211111 1112346789999999999999999999999999999999999
Q ss_pred HHHHhcc--cCCCCCEEEEEeCCCCCCCHHHHH
Q 012341 430 YLEKLCP--TLADGTKVVVNFSGRGDKDVQTAI 460 (465)
Q Consensus 430 a~~~l~~--~~~~~~~VVvv~tG~g~k~~~~v~ 460 (465)
+++++++ ++.++++||+++||+|.||++.++
T Consensus 293 a~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~~~ 325 (352)
T PRK06721 293 GVMKHVQSGKIKKGETVVAVLTGNGLKDPDIAI 325 (352)
T ss_pred HHHHHHHcCCCCCCCeEEEEeCCCCcCchHHHh
Confidence 9999865 356788999999999999999986
No 61
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=8e-46 Score=372.59 Aligned_cols=297 Identities=25% Similarity=0.305 Sum_probs=224.8
Q ss_pred HHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHH
Q 012341 114 GILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATA 193 (465)
Q Consensus 114 ~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA 193 (465)
..-...+| +|||+++++|++.+ +..+||+|+|++|||||||+|++.+++..+++++.+ +|+++|+||||+|+|
T Consensus 7 ~~~~~~~g-~TPL~~~~~l~~~~-----G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~-~lv~aSsGN~g~alA 79 (319)
T PRK06381 7 SSEEKPPG-GTPLLRARKLEEEL-----GLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYS-GITVGTCGNYGASIA 79 (319)
T ss_pred ccccccCC-CCceeEhHhhHHhc-----CCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCCC-EEEEeCCcHHHHHHH
Confidence 34456676 89999999999886 236999999999999999999999999999988875 577899999999999
Q ss_pred HHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhH
Q 012341 194 TVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMM 273 (465)
Q Consensus 194 ~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~ 273 (465)
++|+.+|++|+||||+.. +..|+++|+.+||+|+.++. +++++...+.+. .++ ...|+++++.. ||. .
T Consensus 80 ~~aa~~G~~~~ivvp~~~---~~~~~~~l~~~GA~V~~~~~---~~~~~~~~a~~~-~~~--~~~~~~~~~~~-n~~--~ 147 (319)
T PRK06381 80 YFARLYGLKAVIFIPRSY---SNSRVKEMEKYGAEIIYVDG---KYEEAVERSRKF-AKE--NGIYDANPGSV-NSV--V 147 (319)
T ss_pred HHHHHcCCcEEEEECCCC---CHHHHHHHHHcCCEEEEcCC---CHHHHHHHHHHH-HHH--cCcEecCCCCC-Ccc--h
Confidence 999999999999999975 35688899999999999985 366665554433 332 23565544421 221 1
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-c------CCCcEEEEEecCCCCCCchhhhhhhcc
Q 012341 274 VRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N------DKDVRLIGVEAAGFGLDSGKHAATLSK 346 (465)
Q Consensus 274 v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~------~p~~rvigVe~~~~~~~~~~~~~sl~~ 346 (465)
.++++.+++.|+.+|+ +..||+||+|+|+||+++|++.+++ . +|.+|||+||+.+++ .+..++..
T Consensus 148 ~~~G~~t~a~Ei~~ql----~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~----~~~~~~~~ 219 (319)
T PRK06381 148 DIEAYSAIAYEIYEAL----GDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGN----QIVESFKR 219 (319)
T ss_pred HhhhHHHHHHHHHHHh----CCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCC----HHHHHHHc
Confidence 2478888888876655 4469999999999999999999998 4 689999999999873 45667777
Q ss_pred CCeEeeccceeecccccCCCccCcccccc-cCCCCC-----CCCch-hhhhccCCceEEEeCHHHHHHHHHHHHHhcCCc
Q 012341 347 GEVGVLHGALSYLLQNEDGQIIEPHSISA-GLDYPG-----VGPEH-SFLKDEGRAEYYNVTDDEALEAFKRSSRLEGII 419 (465)
Q Consensus 347 G~~~~~~~~~~~~~~~~~g~~~~~~tia~-gl~~~~-----vg~~~-~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~ 419 (465)
|...... ....++++ .++.+. ..... ..+...+.++.+.|+|+|+++++++|++++||+
T Consensus 220 g~~~~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~ 285 (319)
T PRK06381 220 GSSEVVD--------------LEVDEIRETAVNEPLVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLN 285 (319)
T ss_pred CCCcccC--------------CCcchhhhcccCCCcccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcc
Confidence 7543210 01123332 111111 11011 112233456899999999999999999999999
Q ss_pred ccchHHHHHHHHHHhcccCCCCCEEEEEeCCC
Q 012341 420 PALETAHALAYLEKLCPTLADGTKVVVNFSGR 451 (465)
Q Consensus 420 ~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~ 451 (465)
++|++|+++|+++++.++...+++||+++||+
T Consensus 286 ~epssa~alaa~~~~~~~~~~~~~vv~i~tGg 317 (319)
T PRK06381 286 ALPASASALAALVKYLKKNGVNDNVVAVITGR 317 (319)
T ss_pred cCchHHHHHHHHHHHHHcCCCCCcEEEEecCC
Confidence 99999999999999887544458999999985
No 62
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=1.3e-45 Score=376.42 Aligned_cols=311 Identities=20% Similarity=0.193 Sum_probs=239.0
Q ss_pred HHHhhhcCCCCCeEeccccchhhcCCCCCC-CeEEEeeCCCCC-CCCccHHHHHHHHHHHHHcC----------------
Q 012341 114 GILRDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLNH-TGAHKINNAVGQALLAKRLG---------------- 175 (465)
Q Consensus 114 ~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g-~~i~lK~E~~~p-TGSfK~Rga~~~~~~a~~~g---------------- 175 (465)
+++..+ ++|||+++++|++.+ | .+||+|+|++|+ |||||+||+.+.+..+....
T Consensus 15 ~~~~~~--~~TPL~~~~~l~~~~------g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 86 (376)
T TIGR01747 15 KKIPGY--RPTPLCALDHLANLL------GLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKND 86 (376)
T ss_pred HhCCCC--CCCCCcchHHHHHHh------CCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhh
Confidence 467776 489999999999987 5 699999999985 89999999988876653310
Q ss_pred ------CCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHH
Q 012341 176 ------KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (465)
Q Consensus 176 ------~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~ 249 (465)
...+|+++|+||||+|+|++|+.+|++|+||||++. ++.|+.+|+.+||+|+.++. +++++...+.+
T Consensus 87 ~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~---~~~k~~~i~~~GAeVi~v~~---~~~~a~~~a~~- 159 (376)
T TIGR01747 87 AIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGS---AQERVENILNLGAECTITDM---NYDDTVRLAMQ- 159 (376)
T ss_pred HHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC---CHHHHHHHHhCCCEEEEECC---CHHHHHHHHHH-
Confidence 134788999999999999999999999999999976 35688899999999999984 46776554433
Q ss_pred HHHccCCceEEec-----cCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-c-CC-
Q 012341 250 WVTNVETTHYILG-----SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-N-DK- 321 (465)
Q Consensus 250 ~~~~~~~~~y~~~-----s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~-~p- 321 (465)
+.++ .+ .|+++ .+++.+|+ ++.||.+++.|+.+|+.......||+||+|+|+||+++|++.+++ . .+
T Consensus 160 ~~~~-~g-~~~~~~~~~~~~~~~~~~---ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~ 234 (376)
T TIGR01747 160 MAQQ-HG-WVVVQDTAWEGYEKIPTW---IMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSEN 234 (376)
T ss_pred HHHh-cC-cEEeccccccccccCCch---HHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCC
Confidence 3332 22 44443 24444454 358999999988777632101269999999999999999998875 2 34
Q ss_pred CcEEEEEecCCCCCCchhhhhhhcc--CCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEE
Q 012341 322 DVRLIGVEAAGFGLDSGKHAATLSK--GEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYN 399 (465)
Q Consensus 322 ~~rvigVe~~~~~~~~~~~~~sl~~--G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~ 399 (465)
.+|||+|||+++ +.++++|.. |++..++ ..++||++||.++.+++....+.+...+.++.
T Consensus 235 ~p~vi~Vep~ga----~~~~~s~~~~~g~~~~~~--------------~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~ 296 (376)
T TIGR01747 235 NPHSIVVEPDKA----DCLYQSAVKKDGDIVNVG--------------GDMATIMAGLACGEPNPISWEILRNCTSQFIS 296 (376)
T ss_pred CCEEEEEeeCCC----CHHHHHHHhcCCCeEEcC--------------CCccccccccccCCcchHHHHHHHhcCCEEEE
Confidence 369999999998 468888866 6654311 12579999998765554433344456789999
Q ss_pred eCHHHHHHHHHHHHHhc----CCcccchHHHHHHHHHHhc---------c--cCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 400 VTDDEALEAFKRSSRLE----GIIPALETAHALAYLEKLC---------P--TLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 400 Vsd~e~~~a~~~l~~~e----Gi~~~p~sa~alAa~~~l~---------~--~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
|+|+|+.+||+.|++.. ++++||++|+++|++...+ + .+.++++||+++|| ||.|++.+.+++
T Consensus 297 V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~t~-gn~d~~~~~~~~ 374 (376)
T TIGR01747 297 AQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVISTE-GDTDPDHYREIV 374 (376)
T ss_pred cCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEeCC-CCCCHHHHHHHh
Confidence 99999999999999855 5999999999998887432 1 24567899999998 799999998764
No 63
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=3e-45 Score=376.23 Aligned_cols=310 Identities=18% Similarity=0.171 Sum_probs=232.5
Q ss_pred HHhhhcCCCCCeEeccccchhhcCCCCCC-CeEEEeeCCCCC-CCCccHHHHHHHHHHHH--HcC---------------
Q 012341 115 ILRDYVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLNH-TGAHKINNAVGQALLAK--RLG--------------- 175 (465)
Q Consensus 115 ~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g-~~i~lK~E~~~p-TGSfK~Rga~~~~~~a~--~~g--------------- 175 (465)
++..+ ++|||++++.|++.+ | .+||+|+|++|+ |||||+||+.+.+..+. +.+
T Consensus 35 ~~~~~--~~TPL~~~~~L~~~~------g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~ 106 (396)
T TIGR03528 35 SFPGY--QPTPLAELDNLAKHL------GVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNE 106 (396)
T ss_pred cCCCC--cCCCCcchHHHHHHh------CCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHH
Confidence 45444 589999999999987 5 699999999995 99999999988887642 111
Q ss_pred -----CCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 176 -----KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 176 -----~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
...+||++|+||||+|+|++|+.+|++|+||||++. ++.|+.+|+.+||+|+.++. +++++...+.+ +
T Consensus 107 ~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~---~~~K~~~ir~~GAeVi~~~~---~~~~a~~~a~~-~ 179 (396)
T TIGR03528 107 IREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGS---AQIRLENIRAEGAECTITDL---NYDDAVRLAWK-M 179 (396)
T ss_pred HHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCC---cHHHHHHHHhcCCEEEEECC---CHHHHHHHHHH-H
Confidence 122789999999999999999999999999999976 35688899999999999974 46666554433 3
Q ss_pred HHccCCceEEec-----cCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh--cCCC-
Q 012341 251 VTNVETTHYILG-----SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV--NDKD- 322 (465)
Q Consensus 251 ~~~~~~~~y~~~-----s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~--~~p~- 322 (465)
.++ . ..|+++ ++++.+|+ +..+|.++|.|+.+|+-..-...||+||+|+|+||+++|++.+++ ..+.
T Consensus 180 a~~-~-g~~~v~~~~~~~~~~~~~~---~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~ 254 (396)
T TIGR03528 180 AQE-N-GWVMVQDTAWEGYEKIPTW---IMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEER 254 (396)
T ss_pred HHh-c-CcEeeccccccccccCchH---HHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCC
Confidence 332 2 334443 33333333 357899999998877632211369999999999999999988774 2343
Q ss_pred cEEEEEecCCCCCCchhhhhhhcc--CCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEe
Q 012341 323 VRLIGVEAAGFGLDSGKHAATLSK--GEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNV 400 (465)
Q Consensus 323 ~rvigVe~~~~~~~~~~~~~sl~~--G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~V 400 (465)
+|||+|||+++ ..++.++.. |++.... ..++|+++|+.++..+.....+.+...++++.|
T Consensus 255 p~vi~Vep~~a----~~l~~s~~~~~g~~~~~~--------------g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~V 316 (396)
T TIGR03528 255 PITVIVEPDAA----DCLYRSAIADDGKPHFVT--------------GDMATIMAGLACGEPNTIGWEILRDYASQFISC 316 (396)
T ss_pred CEEEEEccCCC----chHHHHHHhcCCCEEEeC--------------CCccceecccccCCccHHHHHHHHHhCCeEEEE
Confidence 59999999998 357788876 6654321 035789999976444432222334567999999
Q ss_pred CHHHHHHHHHHHHH----hcCCcccchHHHHHHHHHHhc---------c--cCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 401 TDDEALEAFKRSSR----LEGIIPALETAHALAYLEKLC---------P--TLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 401 sd~e~~~a~~~l~~----~eGi~~~p~sa~alAa~~~l~---------~--~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
+|+|++++|++|++ ++++++||++|+++|++..+. + .+.++++||+|+|| ||.|++.+.+++
T Consensus 317 sD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~tg-gn~d~~~~~~~~ 393 (396)
T TIGR03528 317 PDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLISTE-GDTDPDNYRKIV 393 (396)
T ss_pred CHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEECC-CCCCHHHHHHHh
Confidence 99999999999998 579999999999996553222 1 13457899999998 799999998875
No 64
>PLN02569 threonine synthase
Probab=100.00 E-value=4.9e-45 Score=381.76 Aligned_cols=299 Identities=20% Similarity=0.246 Sum_probs=231.5
Q ss_pred CCCeEeccccchh-hcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC----CeEEEEcCCChHHHHHHHHHH
Q 012341 123 ETPLYFAERLTEH-YRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVATATVCA 197 (465)
Q Consensus 123 ~TPL~~l~~Ls~~-l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~----~~~Vv~aSsGNhg~AlA~aa~ 197 (465)
+|||+++++|.+. + +..+||+|+|++|||||||||++...+..+++.+. ...|+++||||||.|+|++|+
T Consensus 133 ~TPLv~~~~l~~~~~-----G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAayaa 207 (484)
T PLN02569 133 NSNLFWAERLGKEFL-----GMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCA 207 (484)
T ss_pred CCceeEhhhhhHhhc-----CCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHHH
Confidence 7999999999877 5 23589999999999999999999888887766543 246889999999999999999
Q ss_pred HcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhH
Q 012341 198 RFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDF 277 (465)
Q Consensus 198 ~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~ 277 (465)
.+|++|+||||++.. +..|+.+|+.+||+|+.+++ +++++...+.+ ..++ ...|.++++ ||++ .+|
T Consensus 208 ~~Gl~~~I~vP~~~~--~~~k~~qi~a~GA~Vi~v~g---~~d~a~~~a~e-~~~~--~~~~~~n~~---Np~~---ieG 273 (484)
T PLN02569 208 AAGIPSIVFLPADKI--SIAQLVQPIANGALVLSIDT---DFDGCMRLIRE-VTAE--LPIYLANSL---NSLR---LEG 273 (484)
T ss_pred hcCCeEEEEEcCCCC--CHHHHHHHHhcCCEEEEECC---CHHHHHHHHHH-HHHH--cCCEecCCC---Ccch---hHh
Confidence 999999999999632 34688889999999999985 56776654433 3332 235776665 6665 378
Q ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEcCCCchhHHHHhHHhhc-------CCCcEEEEEecCCCCCCchhhhhhhccCCe
Q 012341 278 HAVIGKETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFVN-------DKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (465)
Q Consensus 278 ~~~~g~e~~~qi~e~~g~-~~D~vvvpvG~GG~~aGi~~~~~~-------~p~~rvigVe~~~~~~~~~~~~~sl~~G~~ 349 (465)
|.|+++|+.+| ++. .||+||+|+|+||+++|++.+|+. ++.+|||+||+++++ .+++++..|..
T Consensus 274 ~kT~a~EI~eQ----l~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~----pl~~a~~~G~~ 345 (484)
T PLN02569 274 QKTAAIEILQQ----FDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANAN----PLYRAYKSGWE 345 (484)
T ss_pred HHHHHHHHHHH----cCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCc----HHHHHHHcCCC
Confidence 88888887555 453 499999999999999999999873 456799999999984 46777777753
Q ss_pred EeeccceeecccccCCCccCcccccccCCCCCCCC--chhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHH
Q 012341 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGP--EHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHA 427 (465)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~--~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~a 427 (465)
... ....++|+++|+....... ..........+.++.|+|+|+++++++ ++++||+++|+||++
T Consensus 346 ~~~-------------~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaa 411 (484)
T PLN02569 346 EFK-------------PVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVA 411 (484)
T ss_pred ccc-------------cCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHH
Confidence 210 0224678888886431111 011111223356799999999999999 889999999999999
Q ss_pred HHHHHHhccc--CCCCCEEEEEeCCCCCCCHHHHHHH
Q 012341 428 LAYLEKLCPT--LADGTKVVVNFSGRGDKDVQTAIKY 462 (465)
Q Consensus 428 lAa~~~l~~~--~~~~~~VVvv~tG~g~k~~~~v~~~ 462 (465)
+|+++++.++ +.++++||+++||+|.||++....+
T Consensus 412 lAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~~~~~ 448 (484)
T PLN02569 412 LAALKKLRASGVIGPTDRTVVVSTAHGLKFTQSKIDY 448 (484)
T ss_pred HHHHHHHHHcCCCCCCCcEEEEeCCCcccChhHHHHh
Confidence 9999998763 5678899999999999999876543
No 65
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=4.5e-45 Score=384.21 Aligned_cols=298 Identities=20% Similarity=0.257 Sum_probs=225.9
Q ss_pred HhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC---CeEEEEcCCChHHHHH
Q 012341 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK---TRIIAETGAGQHGVAT 192 (465)
Q Consensus 116 i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~---~~~Vv~aSsGNhg~Al 192 (465)
+.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++..+.+.|. ..+|+++|+||||+|+
T Consensus 5 ~~~~~~-~TPl~~~~~l~~~~------~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~al 77 (454)
T TIGR01137 5 IIDLIG-NTPLVRLNKVSKGI------KCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGL 77 (454)
T ss_pred hHHhcC-CCceEEccccCCCC------CceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHH
Confidence 567785 89999999998764 6799999999999999999999999999887765 2468899999999999
Q ss_pred HHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHH--HHHHHHHHHHHccCCceEEeccCCCCCCc
Q 012341 193 ATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD--ATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (465)
Q Consensus 193 A~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~d--a~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (465)
|++|+.+|++|+||||+.. ++.|+.+|+.+||+|+.++... .+++ ...+..+++.++.. ..|++++++++.+
T Consensus 78 A~~a~~~G~~~~iv~p~~~---~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~- 151 (454)
T TIGR01137 78 ALVAAIKGYKCIIVLPEKM---SNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAKRLVREIP-GAHILDQYNNPSN- 151 (454)
T ss_pred HHHHHHcCCeEEEEeCCCc---CHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHHHHHHhCC-CcEecccCCChhh-
Confidence 9999999999999999875 3458889999999999998531 1222 11122233333322 3566677654332
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCe
Q 012341 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (465)
Q Consensus 271 ~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~ 349 (465)
+..++.++|.|+. +|++..||+||+|+||||+++|++.+++ ..|.+|||||||+++.. ..+..
T Consensus 152 ---~~~~~~t~~~Ei~----~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~---------~~~~~ 215 (454)
T TIGR01137 152 ---PLAHYDGTGPEIL----EQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSIL---------AQPEN 215 (454)
T ss_pred ---HHHHHHhhHHHHH----HHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcc---------cCCCc
Confidence 1245667777665 4444469999999999999999999998 68999999999998732 11111
Q ss_pred EeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHH
Q 012341 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALA 429 (465)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alA 429 (465)
.. ......+...|++.+.+ ...+.....++++.|+|+|++++++.|++++|++++|+||++++
T Consensus 216 ~~--------------~~~~~~~~~~g~~~~~~---~~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~a 278 (454)
T TIGR01137 216 LN--------------KTGRTPYKVEGIGYDFI---PTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVV 278 (454)
T ss_pred cc--------------CCCCCCccCCCCCCCCC---CCcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHH
Confidence 00 00001234455543211 11233445789999999999999999999999999999999999
Q ss_pred HHHHhcc-cCCCCCEEEEEeCCCCCCCHHHH
Q 012341 430 YLEKLCP-TLADGTKVVVNFSGRGDKDVQTA 459 (465)
Q Consensus 430 a~~~l~~-~~~~~~~VVvv~tG~g~k~~~~v 459 (465)
+++++++ .++++++||+++||+|.||++++
T Consensus 279 a~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~ 309 (454)
T TIGR01137 279 AALKAAEDELTEDQVIVVLLPDSIRNYMTKF 309 (454)
T ss_pred HHHHHHHhhcCCCCEEEEEECCCCccccCcc
Confidence 9999877 57778999999999999999875
No 66
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=3e-45 Score=369.91 Aligned_cols=293 Identities=23% Similarity=0.241 Sum_probs=226.0
Q ss_pred CCCCeEeccccchhhcCCCCCCC-eEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcC
Q 012341 122 RETPLYFAERLTEHYRRPNGGGP-HIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFG 200 (465)
Q Consensus 122 ~~TPL~~l~~Ls~~l~~~~~~g~-~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~G 200 (465)
.+|||+++++|+..+ +. +||+|+|++|||||||||++.+++..+.+.+.. +|+++||||||+|+|++|+.+|
T Consensus 22 g~TPl~~~~~l~~~~------g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~~-~vv~aSsGN~g~a~A~~a~~~g 94 (328)
T TIGR00260 22 GVTPLFRSPALVANV------GIKNLYVLELFHNPTLSFKDRGMAVALTKALELGND-TVLCASTGNTGAAAAAYAGKAG 94 (328)
T ss_pred CCccCccchHHHHhc------CCccEEehhhccCCchhhHhhhHHHHHHHHHHcCCC-EEEEeCCcHHHHHHHHHhccCC
Confidence 489999999998876 55 999999999999999999999999888887765 6889999999999999999999
Q ss_pred CeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHH
Q 012341 201 LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAV 280 (465)
Q Consensus 201 i~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~ 280 (465)
++|+||||+... ++.|+.+++.+||+|+.++. +++++.+.+ +++.++. ..|.+++.|++ |++ ..+|.+
T Consensus 95 ~~~~v~~p~~~~--s~~k~~~~~~~GA~Vi~~~~---~~~~~~~~~-~~~~~~~--~~~~~~~~n~~-~~~---~~g~~t 162 (328)
T TIGR00260 95 VKVVILYPAGKI--SLGKLAQALGYNAEVVAIDG---NFDDAQRLV-KQLFGDK--EALGLNSVNSI-PYR---LEGQKT 162 (328)
T ss_pred CcEEEEECCCCC--CHHHHHHHHhcCcEEEEecC---CHHHHHHHH-HHHHhhc--CeeecccCCCC-CeE---eeeehh
Confidence 999999999722 25688899999999999985 466765443 4333332 24555554432 665 378888
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhhc--------CCCcEEEEEecCCCCCCchhhhhhh-ccCCeEe
Q 012341 281 IGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN--------DKDVRLIGVEAAGFGLDSGKHAATL-SKGEVGV 351 (465)
Q Consensus 281 ~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~~--------~p~~rvigVe~~~~~~~~~~~~~sl-~~G~~~~ 351 (465)
++.|+.+|+.. ..+|+||+|+|+||+++|++.+++. .| ++++||+.+++ .+...+ ..|++..
T Consensus 163 ~~~Ei~~q~~~---~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve~~~~~----~~~~~~~~~g~~~~ 233 (328)
T TIGR00260 163 YAFEAVEQLGW---EAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQAEGAA----DIVRAFLESGQWEP 233 (328)
T ss_pred HHHHHHHHhCC---CCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEEcCCCC----hHHHHHHcCCCcCc
Confidence 88888666521 2699999999999999999999873 34 99999999973 233333 3443221
Q ss_pred eccceeecccccCCCccCcccccccCCCCCC--CCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHH
Q 012341 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGV--GPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALA 429 (465)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~tia~gl~~~~v--g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alA 429 (465)
...+.|++++++.... .+....+.+...++.+.|+|+|++++++++++++|++++|++|+++|
T Consensus 234 ---------------~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~ala 298 (328)
T TIGR00260 234 ---------------IEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVA 298 (328)
T ss_pred ---------------CCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHH
Confidence 1234688888764311 11111233456789999999999999999999999999999999999
Q ss_pred HHHHhcc--cCCCCCEEEEEeCCCCCCCHH
Q 012341 430 YLEKLCP--TLADGTKVVVNFSGRGDKDVQ 457 (465)
Q Consensus 430 a~~~l~~--~~~~~~~VVvv~tG~g~k~~~ 457 (465)
+++++.+ .+.++++||+++||++.|+.+
T Consensus 299 a~~~~~~~~~~~~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 299 ALLKLVEKGTADPAERVVCALTGNGLKDPE 328 (328)
T ss_pred HHHHHHhCCCCCCCCcEEEEecCCCCCCCC
Confidence 9998875 345788999999999999853
No 67
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.9e-44 Score=363.55 Aligned_cols=270 Identities=21% Similarity=0.245 Sum_probs=210.4
Q ss_pred CCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCe
Q 012341 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQ 202 (465)
Q Consensus 123 ~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~ 202 (465)
+|||++.. +||+|+|++|||||||||++.+++..+++.+.+ .|+++||||||.|+|++|+++|++
T Consensus 58 ~TPLv~~~--------------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~~-~vv~aSsGN~g~slA~~aa~~G~~ 122 (338)
T PRK06450 58 RTPLIKKG--------------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGIK-QISEDSSGNAGASIAAYGAAAGIE 122 (338)
T ss_pred CCCceecC--------------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC-EEEEECCcHHHHHHHHHHHHcCCC
Confidence 79999852 599999999999999999999999999888765 688999999999999999999999
Q ss_pred EEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHH
Q 012341 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (465)
Q Consensus 203 ~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g 282 (465)
|+||||++. ++.|+.+|+.+||+|+.++. +++++... .++ . ..|+++++. ||+. .+|+.|++
T Consensus 123 ~~i~vP~~~---~~~k~~~i~~~GA~vi~v~~---~~~~~~~~-----a~~-~-g~~~~~~~~--np~~---ieG~kTia 184 (338)
T PRK06450 123 VKIFVPETA---SGGKLKQIESYGAEVVRVRG---SREDVAKA-----AEN-S-GYYYASHVL--QPQF---RDGIRTLA 184 (338)
T ss_pred EEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHH-----HHh-c-CeEeccCCC--CccH---HHHHHHHH
Confidence 999999975 46688899999999999985 45554332 111 2 234444442 5654 47888888
Q ss_pred HHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHhHHhh-cC------CCcEEEEEecCCCCCCchhhhhhhccCCeEeecc
Q 012341 283 KETRRQALEKWG-GKPDVLIACVGGGSNAMGLFHEFV-ND------KDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHG 354 (465)
Q Consensus 283 ~e~~~qi~e~~g-~~~D~vvvpvG~GG~~aGi~~~~~-~~------p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~ 354 (465)
+|+.+|+ + ..||+||+|+|+||+++|++.+|+ .. +.+|||+||++++. .++.+|..+.+..
T Consensus 185 ~EI~eql----~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~----p~~~a~~~~~~~~--- 253 (338)
T PRK06450 185 YEIAKDL----DWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVS----PLCAKFKGISYTP--- 253 (338)
T ss_pred HHHHHHc----CCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCC----HHHHHhcCCCCCC---
Confidence 8876554 4 359999999999999999999987 22 35799999999974 4666666332211
Q ss_pred ceeecccccCCCccCcccccccCCCCCCCC--c-hhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Q 012341 355 ALSYLLQNEDGQIIEPHSISAGLDYPGVGP--E-HSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYL 431 (465)
Q Consensus 355 ~~~~~~~~~~g~~~~~~tia~gl~~~~vg~--~-~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~ 431 (465)
...+.|+++|+..+.... . +..+++ . +.++.|+|+|+++++++|++ +|+++||++|+++|++
T Consensus 254 ------------~~~~~tia~~l~~~~p~~~~~~~~~i~~-~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~ 318 (338)
T PRK06450 254 ------------PDKVTSIADALVSTRPFLLDYMVKALSE-Y-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAY 318 (338)
T ss_pred ------------CCCCCcceeeeecCCCCCHHHHHHHHHh-c-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHH
Confidence 224678998886432111 1 122333 3 78999999999999999987 6999999999999999
Q ss_pred HHhcccCCCCCEEEEEeCCCCCCCH
Q 012341 432 EKLCPTLADGTKVVVNFSGRGDKDV 456 (465)
Q Consensus 432 ~~l~~~~~~~~~VVvv~tG~g~k~~ 456 (465)
+++ ++++||+++||+|.|++
T Consensus 319 ~~l-----~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 319 KKY-----SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred HHC-----CCCCEEEEeCCCCccCC
Confidence 886 34789999999999863
No 68
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=7.6e-44 Score=361.49 Aligned_cols=273 Identities=22% Similarity=0.276 Sum_probs=213.4
Q ss_pred CCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCe
Q 012341 123 ETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQ 202 (465)
Q Consensus 123 ~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~ 202 (465)
.|||+++ +.+||+|+|++|||||||||++..++..+++.|.+ .|+++|+||||+|+|++|+++|++
T Consensus 64 ~Tpl~~~-------------~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~~-~vv~aSsGN~g~alA~~aa~~G~~ 129 (347)
T PRK08329 64 ITPTVKR-------------SIKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGIN-EVVIDSSGNAALSLALYSLSEGIK 129 (347)
T ss_pred CCccccC-------------CCeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCCC-EEEEECCCcHHHHHHHHHHHcCCc
Confidence 6999986 34899999999999999999999999999888875 678999999999999999999999
Q ss_pred EEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHH
Q 012341 203 CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIG 282 (465)
Q Consensus 203 ~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g 282 (465)
|+||||++. ++.|+.+|+.+||+|+.++. +++++...+ +++.++ .+ .|+++++ .|||. .++|.+++
T Consensus 130 ~~v~vp~~~---~~~k~~~~~~~GA~v~~v~~---~~~~~~~~a-~~l~~~-~~-~~~~~~~--~np~~---~eG~~t~~ 195 (347)
T PRK08329 130 VHVFVSYNA---SKEKISLLSRLGAELHFVEG---DRMEVHEEA-VKFSKR-NN-IPYVSHW--LNPYF---LEGTKTIA 195 (347)
T ss_pred EEEEECCCC---hHHHHHHHHHcCCEEEEECC---CHHHHHHHH-HHHHHh-cC-CeeccCC--CCchh---hccchhHH
Confidence 999999975 46789999999999999985 345554333 333332 22 2334443 35654 37888888
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhhc-------CCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccc
Q 012341 283 KETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN-------DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGA 355 (465)
Q Consensus 283 ~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~~-------~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~ 355 (465)
+|+.+| ++ .||+||+|+|+||+++|++.+++. ++.+|||+||++++.+ +...
T Consensus 196 ~Ei~eq----l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~----~~~~------------ 254 (347)
T PRK08329 196 YEIYEQ----IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYES----LCKR------------ 254 (347)
T ss_pred HHHHHH----cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCch----HHhc------------
Confidence 887655 44 699999999999999999999872 3678999999998632 1110
Q ss_pred eeecccccCCCccCcccccccCCCCCCCCchh--hhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHH
Q 012341 356 LSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS--FLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEK 433 (465)
Q Consensus 356 ~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~--~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~ 433 (465)
...+.++++|+..+....... ...+...+.++.|+|+|+++++++|++ +||+++|++|+++|++++
T Consensus 255 -----------~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~ 322 (347)
T PRK08329 255 -----------SKSENKLADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWK 322 (347)
T ss_pred -----------cCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHH
Confidence 113567888876543322111 122334578999999999999999986 899999999999999999
Q ss_pred hccc--CCCCCEEEEEeCCCCCCCH
Q 012341 434 LCPT--LADGTKVVVNFSGRGDKDV 456 (465)
Q Consensus 434 l~~~--~~~~~~VVvv~tG~g~k~~ 456 (465)
+.++ +.++++||+++||+|.||+
T Consensus 323 l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 323 LLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred HHHhCCCCCCCeEEEEeCCCCccCC
Confidence 8764 6688999999999999974
No 69
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=1.4e-43 Score=370.50 Aligned_cols=285 Identities=21% Similarity=0.231 Sum_probs=222.1
Q ss_pred hcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHH
Q 012341 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCAR 198 (465)
Q Consensus 119 ~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~ 198 (465)
..| +|||+++ ++++.+ |.+||+|+|++|||||||||++..++..+.+.+.+ .|+++|+||||.|+|++|+.
T Consensus 63 ~~G-~TPLv~~-~~~~~~------g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~~-~vv~aSsGN~g~alA~~aa~ 133 (442)
T PRK05638 63 GEG-GTPLIRA-RISEKL------GENVYIKDETRNPTGSFRDRLATVAVSYGLPYAAN-GFIVASDGNAAASVAAYSAR 133 (442)
T ss_pred CCC-CCcEEcc-cchHHh------CCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCCC-EEEEeCCChHHHHHHHHHHH
Confidence 455 8999998 466665 67999999999999999999999999988887766 57789999999999999999
Q ss_pred cCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHH
Q 012341 199 FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFH 278 (465)
Q Consensus 199 ~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~ 278 (465)
+|++|+||||++. +..|+.+|+.+||+|+.++. +++++...+.+ ..++ ...|.++++. ||+. .++|
T Consensus 134 ~G~~~~i~vp~~~---~~~k~~~~~~~GA~vi~v~~---~~~~~~~~a~~-~~~~--~~~~~~~~~~--np~~---~eG~ 199 (442)
T PRK05638 134 AGKEAFVVVPRKV---DKGKLIQMIAFGAKIIRYGE---SVDEAIEYAEE-LARL--NGLYNVTPEY--NIIG---LEGQ 199 (442)
T ss_pred cCCCEEEEEeCCC---CHHHHHHHHhcCcEEEEECC---CHHHHHHHHHH-HHHh--CCeEecCCCC--ChhH---hhhH
Confidence 9999999999975 35688999999999999974 56777654433 3322 3467766553 4554 4788
Q ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cC------CCcEEEEEecCCCCCCchhhhhhhccCCeEe
Q 012341 279 AVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-ND------KDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351 (465)
Q Consensus 279 ~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~------p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~ 351 (465)
.++++|+.+|+ + ||+||+|+|+||+++|++.+|+ .. ..+|||+||++++. .+..++..+..
T Consensus 200 ~t~a~Ei~eq~----~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~----p~~~~~~~~~~-- 267 (442)
T PRK05638 200 KTIAFELWEEI----N--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCN----PIASEILGNKT-- 267 (442)
T ss_pred HHHHHHHHHHH----C--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCC----HHHHHHhcCCC--
Confidence 88888886664 3 9999999999999999999997 22 34799999999874 35555554421
Q ss_pred eccceeecccccCCCccCcccccccCCCCC--CCCc-hhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHH
Q 012341 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPG--VGPE-HSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHAL 428 (465)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~tia~gl~~~~--vg~~-~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~al 428 (465)
....++++|+..+. .+.. ...+++ ..+.++.|+|+++.++++.+++ +||+++|++|+++
T Consensus 268 ----------------~~~~t~a~gl~~~~p~~~~~~~~~i~~-~~g~~~~v~d~~i~~a~~~l~~-eGi~~epssaaa~ 329 (442)
T PRK05638 268 ----------------KCNETKALGLYVKNPVMKEYVSEAIKE-SGGTAVVVNEEEIMAGEKLLAK-EGIFAELSSAVVM 329 (442)
T ss_pred ----------------CCCCceeeeEeeCCCCCHHHHHHHHHH-hCCEEEEECHHHHHHHHHHHHh-cCceecchHHHHH
Confidence 13456777764321 1111 122332 3577899999999999988875 8999999999999
Q ss_pred HHHHHhccc--CCCCCEEEEEeCCCCCCCH
Q 012341 429 AYLEKLCPT--LADGTKVVVNFSGRGDKDV 456 (465)
Q Consensus 429 Aa~~~l~~~--~~~~~~VVvv~tG~g~k~~ 456 (465)
|+++++.++ +.++++||+++||+|.|+.
T Consensus 330 Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~ 359 (442)
T PRK05638 330 PALLKLGEEGYIEKGDKVVLVVTGSGLKGY 359 (442)
T ss_pred HHHHHHHHcCCCCCCCeEEEEeCCCCCCCC
Confidence 999998764 5678999999999999995
No 70
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=4.9e-43 Score=359.79 Aligned_cols=301 Identities=20% Similarity=0.163 Sum_probs=224.1
Q ss_pred CCCeEeccccchhhcCCCCCCC-eEEE-------eeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHH
Q 012341 123 ETPLYFAERLTEHYRRPNGGGP-HIYL-------KREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (465)
Q Consensus 123 ~TPL~~l~~Ls~~l~~~~~~g~-~i~l-------K~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~ 194 (465)
.|||+++++|++.+ |. ++|+ |+|++|||||||||++.+.+..+.+.+.+ .|+++|+||||+|+|+
T Consensus 62 ~tpl~~~~~L~~~l------G~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~~-~Vv~aSsGN~g~alA~ 134 (398)
T TIGR03844 62 GPVTYKSEGLAREL------GLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGGK-TLVVASAGNTGRAFAE 134 (398)
T ss_pred CCceeehHHHHHHh------CCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHH
Confidence 68999999999987 55 9999 56669999999999999999999888854 6889999999999999
Q ss_pred HHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHH
Q 012341 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMV 274 (465)
Q Consensus 195 aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v 274 (465)
+|+++|++|+||||++.+. ..+ ..++.+||+|+.++. +++++.+.+.+ +.++ . .+|..++ ..||+.
T Consensus 135 ~aa~~Gi~~~I~vP~~~~~--~~~-~~~~~~ga~vv~v~g---~~d~a~~~a~~-~a~~-~-g~~~~~~--~~~p~~--- 200 (398)
T TIGR03844 135 VSAITGQPVILVVPKSSAD--RLW-TTEPASSVLLVTVDG---DYTDAIALADR-IATL-P-GFVPEGG--ARNVAR--- 200 (398)
T ss_pred HHHHcCCcEEEEECCChHH--HHH-HHhhCCcEEEEECCC---CHHHHHHHHHH-HHHh-C-CccccCC--CCCHHH---
Confidence 9999999999999997532 222 235789999999874 57777655443 3332 2 2332111 124543
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhhc--------CCCcEEEEEecCCCCCCchhhhhhhcc
Q 012341 275 RDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN--------DKDVRLIGVEAAGFGLDSGKHAATLSK 346 (465)
Q Consensus 275 ~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~~--------~p~~rvigVe~~~~~~~~~~~~~sl~~ 346 (465)
.+|+.|+++|+++| ++..||+||+|+|+|+++.|++.+++. +..+|+++||++++ +.++++|+.
T Consensus 201 ieG~~Ti~~Ei~eq----l~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~----~p~~~a~~~ 272 (398)
T TIGR03844 201 RDGMGTVMLDAAVT----IGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPF----VPMVNAWQE 272 (398)
T ss_pred HhhHHHHHHHHHHH----cCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCc----hHHHHHHHc
Confidence 48999998887655 443589999999999888888877652 24578999999998 468889998
Q ss_pred CCeEeeccceeecccccCCCccC-cccccccCCCCCC-CCch---hhhhccCCceEEEeCHHHHHHHHHHHHHhcCCccc
Q 012341 347 GEVGVLHGALSYLLQNEDGQIIE-PHSISAGLDYPGV-GPEH---SFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPA 421 (465)
Q Consensus 347 G~~~~~~~~~~~~~~~~~g~~~~-~~tia~gl~~~~v-g~~~---~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~ 421 (465)
|.....+.. +....... .+|+++|+..... +... ....+...++++.|+|+||++|++.|++++|+++|
T Consensus 273 g~~~~~~~~------~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vE 346 (398)
T TIGR03844 273 GRREIIPES------DMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDIL 346 (398)
T ss_pred CCCcccccc------CCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCcccc
Confidence 875421100 00000000 1578888853221 1110 12223456899999999999999999999999999
Q ss_pred chHHHHHHHHHHhccc--CCCCCEEEEEeCCCCCCCHHH
Q 012341 422 LETAHALAYLEKLCPT--LADGTKVVVNFSGRGDKDVQT 458 (465)
Q Consensus 422 p~sa~alAa~~~l~~~--~~~~~~VVvv~tG~g~k~~~~ 458 (465)
|++|+++|+++++.++ +.++++||+++||+|.|++..
T Consensus 347 pa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 347 PAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLRE 385 (398)
T ss_pred ccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHHh
Confidence 9999999999998753 667899999999999998765
No 71
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.5e-43 Score=353.47 Aligned_cols=296 Identities=33% Similarity=0.375 Sum_probs=215.6
Q ss_pred HhhhcCCCCCeEecc-ccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHH
Q 012341 116 LRDYVGRETPLYFAE-RLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATAT 194 (465)
Q Consensus 116 i~~~vg~~TPL~~l~-~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~ 194 (465)
|...++ +|||++++ .+.... .+.+||+|+|++|||||||+|++.+++..+++++.. .|+++|+||||.|+|+
T Consensus 1 i~~~~~-~TPl~~~~~~~~~~~-----~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~~-~vv~assGN~g~a~A~ 73 (306)
T PF00291_consen 1 ISLGIG-PTPLVRLPSRLLSEL-----GGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGGR-TVVGASSGNHGRALAY 73 (306)
T ss_dssp GGGGSS-SS-EEEEHEHHHHHC-----TTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTTS-EEEEESSSHHHHHHHH
T ss_pred CcCCCc-CCCEEECccccchhc-----cCCeEEEEECCCCCcCCcccccchhhhhhccccccc-eeeeeccCCceehhhh
Confidence 345674 89999975 333332 489999999999999999999999999998887665 4689999999999999
Q ss_pred HHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhH
Q 012341 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMM 273 (465)
Q Consensus 195 aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~-~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~ 273 (465)
+|+.+|++|+||||++. ++.|+.+|+.+||+|+.++...+ .++++. +..++.........+.++++ .+..
T Consensus 74 ~a~~~g~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~ 144 (306)
T PF00291_consen 74 AAARLGLKCTIVVPEDV---SPEKLKQMRALGAEVILVPGDVEGAFDDAQ-ELAKERAELLSPFNGELNQY-----NNPN 144 (306)
T ss_dssp HHHHHTCEEEEEEETTS---HHHHHHHHHHTTCEEEEESSTHHHHHHHHH-HHHHHHHHHHHHSTTEESTT-----TSHH
T ss_pred hhhhccccceeeecccc---ccccccceeeecceEEEccccccccccccc-cccccccccccccccccCcc-----cchh
Confidence 99999999999999975 45788899999999999875321 233333 23332111111000113333 1223
Q ss_pred HhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhhc--CCCcEEEEEecCCCCCCchhhhhhhccCCeEe
Q 012341 274 VRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN--DKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351 (465)
Q Consensus 274 v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~~--~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~ 351 (465)
...++.+++.|+..|+. ..++|+||+|+|+||+++|++.+++. .|.+|||+|++.++ +.+.+++..|.+..
T Consensus 145 ~~~g~~~~~~Ei~~q~~---~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~~~~~vigv~~~~~----~~~~~~~~~g~~~~ 217 (306)
T PF00291_consen 145 VIAGYATIGLEIYEQLG---KPDPDYVVVPVGTGGTAAGIAAGLKELILPPVRVIGVEPEGS----DPLYRSFKAGKPIR 217 (306)
T ss_dssp HHHHHHHHHHHHHHHHT---TESESEEEEEESSSHHHHHHHHHHHHHCHTTSEEEEEEETTG----HHHHHHHHHTSCEH
T ss_pred hhhhhhhcchhcccccc---cccceEEEecCCchhHHHHHHhhhhhhhcccccceeeeccCC----cccccccccccccc
Confidence 45788888888776653 12234599999999999999999876 58999999999886 56788888887642
Q ss_pred eccceeecccccCCCccCcccccccCCCCC--CCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHH
Q 012341 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPG--VGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALA 429 (465)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~tia~gl~~~~--vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alA 429 (465)
.+ ..++++ |+..+. .+.....+.+...++++.|+|+|+++++++|++++||+++|++|++++
T Consensus 218 ~~---------------~~~~~~-gl~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~a 281 (306)
T PF00291_consen 218 LP---------------GESTIA-GLGVPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALA 281 (306)
T ss_dssp SS---------------CHHSST-GGTSSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHH
T ss_pred cc---------------ceeeee-cccCCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHH
Confidence 11 113444 766443 222222344455678899999999999999999999999999999999
Q ss_pred HHHHhcccC----CCCCEEEEEeCC
Q 012341 430 YLEKLCPTL----ADGTKVVVNFSG 450 (465)
Q Consensus 430 a~~~l~~~~----~~~~~VVvv~tG 450 (465)
++++++++. +++++||+|+||
T Consensus 282 a~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 282 AALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp HHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred HHHHHHHhCCccccCCCeEEEEcCC
Confidence 999987643 578999999997
No 72
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-42 Score=352.94 Aligned_cols=338 Identities=27% Similarity=0.326 Sum_probs=250.0
Q ss_pred CCccCCCCccccccchhHH-H-----------HHHHHHHHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCC
Q 012341 73 FGRFGRFGGKFVPETLMYA-L-----------SELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPN 140 (465)
Q Consensus 73 ~~~~~~~gG~~~P~~~~~~-~-----------~~i~~a~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~ 140 (465)
-.+..++||+|+|..+... . .++.-.|.+++...+.+.+ .+.+ -.||+++.+++...++.
T Consensus 20 ~~~~c~~cGl~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~---~l~e---g~tp~~~~~~~~~~l~~-- 91 (411)
T COG0498 20 LQGLCPDCGLFLPAEYPYFSLEEIDKLLGLSYPELAWRYLELLPVGEIPAV---SLGE---GGTPLYKAPALAAPLGV-- 91 (411)
T ss_pred hhCcCCcCCcccccccCccchhhhhhhhcccccchHHHHHHHCCCCCcchh---hhhh---ccCccccCcccchhhcc--
Confidence 3577899999999987421 1 1122234443332122111 1222 15999999888887721
Q ss_pred CCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHH
Q 012341 141 GGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVF 220 (465)
Q Consensus 141 ~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~ 220 (465)
.+.++|+|.|++|||||||||++...+..+++.++ .+|+++||||+|.|+|+++++.|++|.|++|++.. ...|..
T Consensus 92 -~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~v--s~~k~~ 167 (411)
T COG0498 92 -LNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKV--SPGKLA 167 (411)
T ss_pred -CCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCC--CHHHHH
Confidence 13469999999999999999999999998888886 57889999999999999999999999999999743 356778
Q ss_pred HHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEE
Q 012341 221 RMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVL 300 (465)
Q Consensus 221 ~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~v 300 (465)
+|..+|++++.+.+ +|||+++. +++..++ . . + ++..|++||++. ++|.++++|++.|+-. ..||+|
T Consensus 168 q~~~~ga~~i~v~G---~fDda~~~-vk~~~~~-~-~-~-~~~~nsiNp~rl---egq~t~~fe~~~ql~~---~~p~~v 233 (411)
T COG0498 168 QMLTLGAHVIAVDG---NFDDAQEL-VKEAANR-E-G-L-LSAVNSINPYRL---EGQKTYAFEIAEQLGW---KAPDHV 233 (411)
T ss_pred HHHhcCCEEEEEcC---cHHHHHHH-HHHHHhh-C-C-c-eeeccccCHHHh---hhhhhhHhHHHHHhCC---CCCCeE
Confidence 89999999999985 57777654 4544442 1 2 2 566778899984 8999999998777621 479999
Q ss_pred EEcCCCchhHHHHhHHhhcC-C------CcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccc
Q 012341 301 IACVGGGSNAMGLFHEFVND-K------DVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSI 373 (465)
Q Consensus 301 vvpvG~GG~~aGi~~~~~~~-p------~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~ti 373 (465)
+||+|+||++.|++.++++. + -++..+|++++..+ ....++.+ ...+.|+
T Consensus 234 ~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p----~~~~~~~~-------------------~~~~~T~ 290 (411)
T COG0498 234 VVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSP----GVYAWKEG-------------------RETPETI 290 (411)
T ss_pred EEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccc----hhhhcccc-------------------ccccccc
Confidence 99999999999999999732 2 24556666666421 12222211 1357899
Q ss_pred cccCCCCCCCCchhh----hhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhccc-CCCCCEEEEEe
Q 012341 374 SAGLDYPGVGPEHSF----LKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPT-LADGTKVVVNF 448 (465)
Q Consensus 374 a~gl~~~~vg~~~~~----l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~-~~~~~~VVvv~ 448 (465)
+++|+.. ...++.. +.+. .+..+.|||+|++++++.+++++|++++|+||++++++++++++ +.+++++|+++
T Consensus 291 a~am~I~-~p~n~~r~l~a~~es-~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~ 368 (411)
T COG0498 291 APAMDIG-NPSNWERALFALRES-GGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVL 368 (411)
T ss_pred ccccccC-CCCCHHHHHHHHHhc-CCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEe
Confidence 9999842 2222222 2222 25589999999999999999999999999999999999998763 56788999999
Q ss_pred CCCCCCCHHHHHH
Q 012341 449 SGRGDKDVQTAIK 461 (465)
Q Consensus 449 tG~g~k~~~~v~~ 461 (465)
||||.||++++++
T Consensus 369 Tg~~~K~~~~v~~ 381 (411)
T COG0498 369 TGHGLKFPDTVEE 381 (411)
T ss_pred cCCcccChhHHHh
Confidence 9999999999765
No 73
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=5e-42 Score=332.31 Aligned_cols=240 Identities=38% Similarity=0.521 Sum_probs=202.2
Q ss_pred CCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC--CeEEEEcCCChHHHHHHHHHHHcCC
Q 012341 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK--TRIIAETGAGQHGVATATVCARFGL 201 (465)
Q Consensus 124 TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~--~~~Vv~aSsGNhg~AlA~aa~~~Gi 201 (465)
|||+++++|++.. +.+||+|+|++|||||||||++.+++..+.+.+. ..+|+++|+||||.|+|++|+.+|+
T Consensus 1 TPl~~~~~l~~~~------~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~ 74 (244)
T cd00640 1 TPLVRLKRLSKLG------GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGL 74 (244)
T ss_pred CCeeEcccccccc------CCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence 8999999988753 7899999999999999999999999999988774 5678899999999999999999999
Q ss_pred eEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHH
Q 012341 202 QCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVI 281 (465)
Q Consensus 202 ~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~ 281 (465)
+|+||||... ++.|+++|+.+|++|+.++. +++++...+ +++.++.. ..|+++++. ||+. ..+|.++
T Consensus 75 ~~~v~~p~~~---~~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a-~~~~~~~~-~~~~~~~~~--n~~~---~~g~~~~ 141 (244)
T cd00640 75 KCTIVMPEGA---SPEKVAQMRALGAEVVLVPG---DFDDAIALA-KELAEEDP-GAYYVNQFD--NPAN---IAGQGTI 141 (244)
T ss_pred CEEEEECCCC---CHHHHHHHHHCCCEEEEECC---CHHHHHHHH-HHHHHhCC-CCEecCCCC--CHHH---HHHHHHH
Confidence 9999999976 46788899999999999985 366665443 44444323 356666652 3333 3788888
Q ss_pred HHHHHHHHHHHhCC-CCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeec
Q 012341 282 GKETRRQALEKWGG-KPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL 359 (465)
Q Consensus 282 g~e~~~qi~e~~g~-~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~ 359 (465)
+.|+.+|+ +. .||+||+|+|+||+++|++.+++ ..|.+|||+|++
T Consensus 142 ~~Ei~~q~----~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------- 188 (244)
T cd00640 142 GLEILEQL----GGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------- 188 (244)
T ss_pred HHHHHHHc----CCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee-----------------------------
Confidence 88876655 33 59999999999999999999998 679999999995
Q ss_pred ccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCC
Q 012341 360 LQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLA 439 (465)
Q Consensus 360 ~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~ 439 (465)
+++.|+|+|++++++++++++|++++|++|++++++.++.++.+
T Consensus 189 ------------------------------------~~~~v~d~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~~~~~~ 232 (244)
T cd00640 189 ------------------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLG 232 (244)
T ss_pred ------------------------------------eEEEECHHHHHHHHHHHHHHcCceECHhHHHHHHHHHHHHHhcC
Confidence 23889999999999999999999999999999999999887766
Q ss_pred CCCEEEEEeCCC
Q 012341 440 DGTKVVVNFSGR 451 (465)
Q Consensus 440 ~~~~VVvv~tG~ 451 (465)
++++||+++||+
T Consensus 233 ~~~~vv~v~tg~ 244 (244)
T cd00640 233 KGKTVVVILTGG 244 (244)
T ss_pred CCCEEEEEeCCC
Confidence 788999999984
No 74
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=3.5e-42 Score=347.71 Aligned_cols=306 Identities=25% Similarity=0.267 Sum_probs=220.8
Q ss_pred HhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCC--CCccHHHHHHHHHHHHHcCCCeEEEEcC--CChHHHH
Q 012341 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRIIAETG--AGQHGVA 191 (465)
Q Consensus 116 i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pT--GSfK~Rga~~~~~~a~~~g~~~~Vv~aS--sGNhg~A 191 (465)
+...+ .+|||++++.|++.+ +.+||+|+|++||+ ||||+|++.+++..+++.+.+. ||++| +||||.|
T Consensus 9 ~~~~~-~~TPl~~~~~l~~~~------g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~~~-vvt~g~s~gN~g~a 80 (331)
T PRK03910 9 LELAG-LPTPLEPLPRLSAAL------GPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGADT-LITAGAIQSNHARQ 80 (331)
T ss_pred ccccC-CCCCceEhhhhhHhh------CCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCCCE-EEEcCcchhHHHHH
Confidence 44455 489999999998876 77999999999997 5999999999999888888764 55664 4899999
Q ss_pred HHHHHHHcCCeEEEEEcCCChhhH-----HHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCC
Q 012341 192 TATVCARFGLQCIVYMGAQDMERQ-----ALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAG 266 (465)
Q Consensus 192 lA~aa~~~Gi~~~Vv~P~~~~~~~-----~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~ 266 (465)
+|++|+.+|++|+||||+..+... ..|...|+.+||+|+.++.. ++..+...+..+++.++....+++..+.
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~-- 157 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG-TDMDAQLEELAEELRAQGRRPYVIPVGG-- 157 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCcc-chHHHHHHHHHHHHHHcCCceEEECCCC--
Confidence 999999999999999999654211 25778899999999999854 2333333333333333322223333333
Q ss_pred CCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhc
Q 012341 267 PHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLS 345 (465)
Q Consensus 267 ~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~ 345 (465)
.+|+. ..+|.+++.|+.+|+.. .+..||+||+|+||||+++|++.+++ .+|+++|||||++++.. +..+
T Consensus 158 ~~~~~---~~g~~~~~~Ei~~q~~~-~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~----~~~~-- 227 (331)
T PRK03910 158 SNALG---ALGYVACALEIAQQLAE-GGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAA----EQEP-- 227 (331)
T ss_pred CCchh---HHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHH----HHHH--
Confidence 24432 36777788888776632 12269999999999999999999998 68999999999998631 1111
Q ss_pred cCCeEeeccceeecccccCCCccCcccccccCCCC-CCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccc-h
Q 012341 346 KGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYP-GVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPAL-E 423 (465)
Q Consensus 346 ~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~-~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p-~ 423 (465)
.+ .....++++++..+ .+.+....+.+.+.++.+.|+|+|+++++++|++++||+++| |
T Consensus 228 --~~-----------------~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~y 288 (331)
T PRK03910 228 --KV-----------------AKLAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVY 288 (331)
T ss_pred --HH-----------------HHHHHHHHHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCcccccc
Confidence 00 00123455555432 122221224445678899999999999999999999999999 5
Q ss_pred HHHHHHHHHHhcc--cCCCCCEEEEEeCCCCCCCHHHHHHH
Q 012341 424 TAHALAYLEKLCP--TLADGTKVVVNFSGRGDKDVQTAIKY 462 (465)
Q Consensus 424 sa~alAa~~~l~~--~~~~~~~VVvv~tG~g~k~~~~v~~~ 462 (465)
+|+++++++++.+ .+.++++||+|+|| |+.+.--+.+.
T Consensus 289 sg~~~aa~~~~~~~~~~~~~~~Vv~i~tG-G~~~~~~~~~~ 328 (331)
T PRK03910 289 TGKAMAGLIDLIRQGRFKKGGNVLFIHTG-GAPALFAYADA 328 (331)
T ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEECC-ChHhhhhhhhh
Confidence 9999999999864 34467899999998 67766555443
No 75
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=7.6e-42 Score=346.03 Aligned_cols=296 Identities=23% Similarity=0.334 Sum_probs=217.9
Q ss_pred hcCCCCCeEeccccchhhcCCCCCC-CeEEEeeCCCCCC---CCccHHHHHHHHHHHHHcCCCeEEEEc--CCChHHHHH
Q 012341 119 YVGRETPLYFAERLTEHYRRPNGGG-PHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVAT 192 (465)
Q Consensus 119 ~vg~~TPL~~l~~Ls~~l~~~~~~g-~~i~lK~E~~~pT---GSfK~Rga~~~~~~a~~~g~~~~Vv~a--SsGNhg~Al 192 (465)
.++ +|||+++++|++.+ +. .+||+|+|++||+ ||||+|.+..++..+.+.|.. +|+++ |+||||+|+
T Consensus 12 ~~g-~TPL~~~~~l~~~~-----g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~-~vvs~G~s~GN~g~al 84 (337)
T PRK12390 12 TFG-PTPIHPLKRLSAHL-----GGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGAD-TLVSIGGVQSNHTRQV 84 (337)
T ss_pred CCC-CCcceeHHHHHHHh-----CCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCCC-EEEEeCCCccHHHHHH
Confidence 344 89999999998876 22 7999999999987 777999999999999888886 55666 789999999
Q ss_pred HHHHHHcCCeEEEEEcCCCh-----hhHHHhHHHHHhcCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceEEeccCCC
Q 012341 193 ATVCARFGLQCIVYMGAQDM-----ERQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYILGSVAG 266 (465)
Q Consensus 193 A~aa~~~Gi~~~Vv~P~~~~-----~~~~~k~~~~~~~GA~V~~v~~~~~-~~~da~~~a~~~~~~~~~~~~y~~~s~~~ 266 (465)
|++|+++|++|+||||...+ ..+..|+.+|+.|||+|+.++...+ ..+++...+.+.+. +..+..|.+....+
T Consensus 85 A~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 163 (337)
T PRK12390 85 AAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVR-AAGGKPYAIPAGAS 163 (337)
T ss_pred HHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHH-hCCCceEEeCCcCC
Confidence 99999999999999876422 1123477889999999999986421 23344444444333 22333554444444
Q ss_pred CCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhc
Q 012341 267 PHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLS 345 (465)
Q Consensus 267 ~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~ 345 (465)
.||+. ..++.+++.|+.+|+. +++..+|+||+|+|+|||++|++.+++ .+|.+|||||+++++.. +...
T Consensus 164 ~~~~~---~~G~~~~a~Ei~~q~~-~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~----~~~~-- 233 (337)
T PRK12390 164 DHPLG---GLGFVGFAEEVRAQEA-ELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPE----QTRA-- 233 (337)
T ss_pred CCCcc---cHHHHHHHHHHHHHHH-hcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchH----HHHH--
Confidence 56654 2566667888877753 355579999999999999999999998 68999999999998732 1111
Q ss_pred cCCeEeeccceeecccccCCCccCcccccccCCCCC-CCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccc-h
Q 012341 346 KGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPG-VGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPAL-E 423 (465)
Q Consensus 346 ~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~-vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p-~ 423 (465)
+.. ...+++++++..+. ..+....+...+.++.+.|+|+|++++++++++++|++++| |
T Consensus 234 --~~~-----------------~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~y 294 (337)
T PRK12390 234 --QVL-----------------RIARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVY 294 (337)
T ss_pred --HHH-----------------HHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccH
Confidence 000 01234444443221 11111123445678999999999999999999999999999 5
Q ss_pred HHHHHHHHHHhcc--cCCCCCEEEEEeCCC
Q 012341 424 TAHALAYLEKLCP--TLADGTKVVVNFSGR 451 (465)
Q Consensus 424 sa~alAa~~~l~~--~~~~~~~VVvv~tG~ 451 (465)
||+++++++++.+ .++++++||++|||+
T Consensus 295 sg~~~aa~~~~~~~g~~~~~~~vv~~htgg 324 (337)
T PRK12390 295 EGKSMHGMIDLVRKGEFPEGSKVLYAHLGG 324 (337)
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 9999999999875 467888999999995
No 76
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=1e-41 Score=354.18 Aligned_cols=345 Identities=17% Similarity=0.094 Sum_probs=257.2
Q ss_pred CCccCCCCccccccchhH------------HHHHHHHHHHHhcC-CchHHHHHHHHHhhhcC-C----CCCeEeccccch
Q 012341 73 FGRFGRFGGKFVPETLMY------------ALSELESALHKLAD-DRDFQEELSGILRDYVG-R----ETPLYFAERLTE 134 (465)
Q Consensus 73 ~~~~~~~gG~~~P~~~~~------------~~~~i~~a~~~~~~-~~~~~~~l~~~i~~~vg-~----~TPL~~l~~Ls~ 134 (465)
-..++.+||||||+.++. ++.++.....+.|. ++...++|++++.+... + .+||.++
T Consensus 20 l~Gla~DGGLyvP~~~P~l~~~~~~~~~~~sy~~~a~~il~~f~~~~i~~~~l~~~i~~ay~~F~~~~~~pl~~l----- 94 (462)
T PRK09225 20 LQGLAPDGGLYVPEELPKLSAEEIDALLGLSYAELAFEILSAFVGDDIPEDDLKAIIARAYTTFDHPAIAPLVQL----- 94 (462)
T ss_pred hcCCCCCCceEeCcccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCCcCccceEEe-----
Confidence 346789999999999822 55777777777664 44444568888887664 3 3788776
Q ss_pred hhcCCCCCCCeEEEeeCCCCCCCCccHHHHHH---HHHHHHHcCCCeEEEEcCCChHHHHH-HHHHHHcCCeEEEEEcCC
Q 012341 135 HYRRPNGGGPHIYLKREDLNHTGAHKINNAVG---QALLAKRLGKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQ 210 (465)
Q Consensus 135 ~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~---~~~~a~~~g~~~~Vv~aSsGNhg~Al-A~aa~~~Gi~~~Vv~P~~ 210 (465)
+.++|+...+|+||||||||++.. .+..+.+ +...+|+++||||+|.|+ |.++.+.|++|+|++|++
T Consensus 95 --------~~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~ATSGdtG~Aa~aaf~~~~gi~~~V~~P~g 165 (462)
T PRK09225 95 --------DDNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGATSGDTGSAAAEAFRGKPNVRVVILYPKG 165 (462)
T ss_pred --------CCCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcCC
Confidence 236899999999999999999866 4555555 545678899999999999 566899999999999996
Q ss_pred ChhhHHHhHHHHHhc-CCEE--EEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHH
Q 012341 211 DMERQALNVFRMRLL-GAEV--RAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRR 287 (465)
Q Consensus 211 ~~~~~~~k~~~~~~~-GA~V--~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~ 287 (465)
.. +..+..+|..+ |++| +.|+ ++++|++....+.+.++.-...+.+.+.|++||++. .+|.++++|++.
T Consensus 166 ~v--s~~q~~Qm~t~~g~nv~vi~V~---G~fDD~q~~vk~~~~d~~~~~~~~l~saNSiN~~Ri---~gQ~~yyfea~~ 237 (462)
T PRK09225 166 KV--SPVQEKQMTTLQGDNIHVVAVE---GNFDDCQALVKAAFNDEELKEKLKLSSANSINIGRL---LAQIVYYFYAYL 237 (462)
T ss_pred CC--CHHHHHHHHhhcCCCeEEEEeC---CCHHHHHHHHHHHhhchhhhhcCceEEEeccCHHHH---HHHHHHHHHHHH
Confidence 32 24466679999 9977 5665 367887655444332211122244566777899984 788888899988
Q ss_pred HHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCCC
Q 012341 288 QALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQ 366 (465)
Q Consensus 288 qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~ 366 (465)
|+.... +.||+|+||+|+||++.|.+.+.+ ..|..|+|++++.+. ...+.+..|.+..
T Consensus 238 ql~~~~-~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n~-----~l~~~~~~G~y~~--------------- 296 (462)
T PRK09225 238 QLGIEA-GEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNEND-----VLTRFLKTGVYDP--------------- 296 (462)
T ss_pred Hhcccc-CCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCCh-----HHHHHHHcCCCcc---------------
Confidence 874322 258999999999999999998866 567779999986663 4567788776431
Q ss_pred ccCcccccccCCCCCCCCchhh------------h----hc---cCC--------------ceEEEeCHHHHHHHHHHHH
Q 012341 367 IIEPHSISAGLDYPGVGPEHSF------------L----KD---EGR--------------AEYYNVTDDEALEAFKRSS 413 (465)
Q Consensus 367 ~~~~~tia~gl~~~~vg~~~~~------------l----~~---~~~--------------~~~~~Vsd~e~~~a~~~l~ 413 (465)
...+.|++.+|+.+ ...++.. + .. ... -..+.|+|+|+++++++++
T Consensus 297 ~~~~~T~s~amdI~-~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~ 375 (462)
T PRK09225 297 RPTVATLSPAMDIS-VSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVY 375 (462)
T ss_pred CCCCCCcCchhhcC-CCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHH
Confidence 12467899998853 2233333 1 00 010 1668999999999999999
Q ss_pred HhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 414 RLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 414 ~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
+++|++++||||++++++.++ +.+++++|++.||+|.||++.+.+.++
T Consensus 376 ~~~G~~~dPhtAva~aa~~~~---~~~~~~~V~l~Ta~p~Kf~~~v~~a~~ 423 (462)
T PRK09225 376 EEYGYLIDPHTAVAYKAAREY---LDPGEPGVVLSTAHPAKFPEVVEEALG 423 (462)
T ss_pred HhCCEEECchHHHHHHHHHHh---hCCCCCEEEEecCCccCCHHHHHHhcC
Confidence 999999999999999999886 346678999999999999999998765
No 77
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=3.4e-42 Score=345.08 Aligned_cols=290 Identities=21% Similarity=0.223 Sum_probs=207.4
Q ss_pred hcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCC--CCccHHHHHHHHHHHHHcCCCeEEEEc--CCChHHHHHHH
Q 012341 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATAT 194 (465)
Q Consensus 119 ~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pT--GSfK~Rga~~~~~~a~~~g~~~~Vv~a--SsGNhg~AlA~ 194 (465)
+++++|||+++++|+... +.+||+|+|++||| ||||+|++.+++..+++++.+ .||++ |+||||+|+|+
T Consensus 3 ~~~~~TPl~~~~~l~~~~------g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~~-~vv~~g~ssGN~g~alA~ 75 (311)
T TIGR01275 3 LIPWPTPIQYLPRISREI------GAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGAD-TVITVGAIQSNHARATAL 75 (311)
T ss_pred CCCCCCcceechhhhhhc------CCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCCC-EEEEcCCchhHHHHHHHH
Confidence 456799999999998875 68999999999998 999999999999988888875 56677 56999999999
Q ss_pred HHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHH---HHHHHHHHHHccCCceEEeccCCCCCCch
Q 012341 195 VCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDA---TSEAIRDWVTNVETTHYILGSVAGPHPYP 271 (465)
Q Consensus 195 aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da---~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 271 (465)
+|+++|++++||||.... +..|..+++.+||+|+.++.. ++++. ..+..+++.++....+++.++.. ||+.
T Consensus 76 ~a~~~G~~~~ivvp~~~~--~~~~~~~~~~~Ga~v~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~ 149 (311)
T TIGR01275 76 AAKKLGLDAVLVLREKEE--LNGNLLLDKLMGAETRVYSAE--EYFEIMKYAEELAEELEKEGRKPYVIPVGGS--NSLG 149 (311)
T ss_pred HHHHhCCceEEEecCCcc--CCCCHHHHHHcCCEEEEECch--hhhhhHHHHHHHHHHHHhcCCCeEEECCCCC--cHHH
Confidence 999999999999998532 233566689999999999752 22222 22222221222122334444443 4432
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeE
Q 012341 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350 (465)
Q Consensus 272 ~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~ 350 (465)
..+|.++|.|+.+|+.. . ..||+||+|+|||||++|++.+++ .+|+++||||+++.+.. .....+.
T Consensus 150 ---~~g~~~~~~EI~~q~~~-~-~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~---~~~~~~~----- 216 (311)
T TIGR01275 150 ---TLGYVEAVLEIATQLES-E-VKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGE---DMTDKFV----- 216 (311)
T ss_pred ---HHHHHHHHHHHHHHHhc-C-CCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHH---HHHHHHH-----
Confidence 25666667776655421 1 269999999999999999999998 68899999999876521 0111110
Q ss_pred eeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccc-hHHHHHH
Q 012341 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPAL-ETAHALA 429 (465)
Q Consensus 351 ~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p-~sa~alA 429 (465)
...+++++++..+.. ..+. +.....+..+.|+|+|+++++++|++++|+++|| |+|++++
T Consensus 217 -----------------~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~a 277 (311)
T TIGR01275 217 -----------------NLVKEIAEGLEVKAS-EVIP-ELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFY 277 (311)
T ss_pred -----------------HHHHHHHHHhCCCCC-CCEE-EECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHH
Confidence 013456666542210 1111 2223456789999999999999999999999999 6999999
Q ss_pred HHHHhcccCC-CCCEEEEEeCCCCCC
Q 012341 430 YLEKLCPTLA-DGTKVVVNFSGRGDK 454 (465)
Q Consensus 430 a~~~l~~~~~-~~~~VVvv~tG~g~k 454 (465)
++++++++.. ++++||+++|| |+.
T Consensus 278 a~~~~~~~~~~~~~~vv~i~tG-G~~ 302 (311)
T TIGR01275 278 GLIDLIRKGELGEKGILFIHTG-GIS 302 (311)
T ss_pred HHHHHHHhCCCCCCCEEEEECC-Ccc
Confidence 9998764322 46789999999 453
No 78
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=2.6e-41 Score=342.06 Aligned_cols=306 Identities=19% Similarity=0.269 Sum_probs=222.4
Q ss_pred CCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCC---CCccHHHHHHHHHHHHHcCCCeEEEEc--CCChHHHHHHHHH
Q 012341 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATATVC 196 (465)
Q Consensus 122 ~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pT---GSfK~Rga~~~~~~a~~~g~~~~Vv~a--SsGNhg~AlA~aa 196 (465)
.+|||+++++|++.++ .+.+||+|+|++||+ ||||+|++..++..++++|.. +|+++ |+||||+|+|++|
T Consensus 13 g~TPl~~~~~l~~~~g----~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~~-~vvs~ggs~gN~g~alA~~a 87 (337)
T TIGR01274 13 GPSPIHPLPRLSQHLG----GKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGCT-TLVSIGGIQSNQTRQVAAVA 87 (337)
T ss_pred CCCCceEhHhhHHhcC----CCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCCC-EEEECCCCcchHHHHHHHHH
Confidence 4899999999998761 135999999999986 777999999999999988886 55665 6699999999999
Q ss_pred HHcCCeEEEEEcCCCh-h----hHHHhHHHHHhcCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceEEeccCCCCCCc
Q 012341 197 ARFGLQCIVYMGAQDM-E----RQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (465)
Q Consensus 197 ~~~Gi~~~Vv~P~~~~-~----~~~~k~~~~~~~GA~V~~v~~~~~-~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (465)
+++|++|+||||+... . .+..|+.+|+.+||+|+.++.... ...++..++.+.+.++ ....|++....+.||+
T Consensus 88 ~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~-~~~~~~i~~~~~~~~~ 166 (337)
T TIGR01274 88 AHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGA-GGKPYPIPAGCSDHPL 166 (337)
T ss_pred HHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhc-CCceEEeCCCCCCCcc
Confidence 9999999999998421 1 125688999999999999985321 2234444444443332 2233554444445666
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCe
Q 012341 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (465)
Q Consensus 271 ~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~ 349 (465)
. ..++.+++.|+.+|+. +++..||+||+|+|+|||++|++.+++ .++++||||||+.++.. +.. +..
T Consensus 167 ~---~~G~~~~~~Ei~eq~~-~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~----~~~----~~~ 234 (337)
T TIGR01274 167 G---GLGFVGFAFEVREQEG-ELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPE----QTR----AQI 234 (337)
T ss_pred c---hhHHHHHHHHHHHHHH-hcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHH----HHH----HHH
Confidence 4 2566666888777763 244479999999999999999999998 67899999999999732 110 000
Q ss_pred EeeccceeecccccCCCccCcccccccCCCCCC-CCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccc-hHHHH
Q 012341 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGV-GPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPAL-ETAHA 427 (465)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~v-g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p-~sa~a 427 (465)
.....++++++..+.. .+....+...+.++.|.|+|+|++++++++++++|++++| |||++
T Consensus 235 -----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~ 297 (337)
T TIGR01274 235 -----------------LRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKS 297 (337)
T ss_pred -----------------HHHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHH
Confidence 0112345555432211 0111124445568899999999999999999999999999 69999
Q ss_pred HHHHHHhcc--cCCCCCEEEEEeCCCCCCCHHHHHHHh
Q 012341 428 LAYLEKLCP--TLADGTKVVVNFSGRGDKDVQTAIKYL 463 (465)
Q Consensus 428 lAa~~~l~~--~~~~~~~VVvv~tG~g~k~~~~v~~~~ 463 (465)
+++++++.+ +++++++||++||| |...+-.+.+.+
T Consensus 298 ~aa~~~~~~~g~~~~~~~vv~~htG-G~~~~~~~~~~~ 334 (337)
T TIGR01274 298 MHGMIEMIRRGEFKEGSNVLYAHLG-GAPALNAYSFLF 334 (337)
T ss_pred HHHHHHHHhcCCCCCCCEEEEEeCC-ChhhhhhhHHHh
Confidence 999999876 36788999999999 555555554444
No 79
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=4.6e-41 Score=349.45 Aligned_cols=349 Identities=18% Similarity=0.096 Sum_probs=258.5
Q ss_pred CCccCCCCccccccchh------------HHHHHHHHHHHHhcC-CchHHHHHHHHHhhhcC-CC----CCeEeccccch
Q 012341 73 FGRFGRFGGKFVPETLM------------YALSELESALHKLAD-DRDFQEELSGILRDYVG-RE----TPLYFAERLTE 134 (465)
Q Consensus 73 ~~~~~~~gG~~~P~~~~------------~~~~~i~~a~~~~~~-~~~~~~~l~~~i~~~vg-~~----TPL~~l~~Ls~ 134 (465)
-..++.+||||||+.++ .++.++.....+.|. ++...++|++++..... ++ +||.++
T Consensus 19 l~Gla~DGGLyvP~~~P~~~~~~~~~~~~~sy~~~a~~vl~~f~~~~i~~~~L~~~i~~ay~~F~~~~~~pl~~l----- 93 (460)
T cd01560 19 LSGLAPDGGLYVPEELPKLSAEEIASWSGLSYQELAFEVLSLFIGDEIPEDDLKSLIDRAYSFFRHPDIAPLVQL----- 93 (460)
T ss_pred hcCCCCCCceecCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCccceEEe-----
Confidence 34678999999999872 256777777777666 44444568999987663 23 787776
Q ss_pred hhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHH---HHHHHHc-CCCeEEEEcCCChHHHHH-HHHHHHcCCeEEEEEcC
Q 012341 135 HYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQ---ALLAKRL-GKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGA 209 (465)
Q Consensus 135 ~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~---~~~a~~~-g~~~~Vv~aSsGNhg~Al-A~aa~~~Gi~~~Vv~P~ 209 (465)
+.++|++.++|+||||||||++..+ +..+.+. ....+|+++||||+|.|+ +..+++.|++|+|++|+
T Consensus 94 --------~~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~ATSGdTG~Aa~aaf~~~~gi~v~Vl~P~ 165 (460)
T cd01560 94 --------GDNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPK 165 (460)
T ss_pred --------CCCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEcCCCcHHHHHHHHHhCcCCCEEEEEEcC
Confidence 3368999999999999999998654 3444333 345578899999999995 67799999999999999
Q ss_pred CChhhHHHhHHHHHhcCC---EEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHH
Q 012341 210 QDMERQALNVFRMRLLGA---EVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETR 286 (465)
Q Consensus 210 ~~~~~~~~k~~~~~~~GA---~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~ 286 (465)
+.. +..+..+|..+|+ +++.|++ +++|++....+.+.+..-...+.+.+.|++||++. .+|.++++|++
T Consensus 166 g~v--s~~Q~~Qm~t~g~~Nv~vi~V~G---~fDd~q~~vk~~~~d~~~~~~~~l~saNSiN~~Ri---~~Q~~yyf~a~ 237 (460)
T cd01560 166 GGV--SPIQELQMTTLPADNVHVVAVEG---DFDDCQSLVKALFADEDFNKKLKLSSANSINWARI---LAQIVYYFYAY 237 (460)
T ss_pred CCC--CHHHHHHHHhhCCCceEEEEEcC---CHHHHHHHHHHHhcChhhHhcceEEEEeccCHHHH---HHHHHHHHHHH
Confidence 632 2456678999996 7888874 57887655443332211112344567777899985 67888889999
Q ss_pred HHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEeeccceeecccccCC
Q 012341 287 RQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDG 365 (465)
Q Consensus 287 ~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g 365 (465)
.|+..+..+.||.|+||+|+||++.|.+.+++ ..|..|+|++++.+. ...+.+.+|.+...
T Consensus 238 ~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~-----il~~~~~~G~y~~~------------- 299 (460)
T cd01560 238 LQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEND-----VLRRFFKTGRYDRR------------- 299 (460)
T ss_pred HHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCCh-----HHHHHHHcCCCcCC-------------
Confidence 88743211268999999999999999999877 568889999887663 34567777765320
Q ss_pred CccCcccccccCCCCCCCCchhhhhcc--CC-------------------------------ceEEEeCHHHHHHHHHHH
Q 012341 366 QIIEPHSISAGLDYPGVGPEHSFLKDE--GR-------------------------------AEYYNVTDDEALEAFKRS 412 (465)
Q Consensus 366 ~~~~~~tia~gl~~~~vg~~~~~l~~~--~~-------------------------------~~~~~Vsd~e~~~a~~~l 412 (465)
...+.|++.+|+.. ...++..+... .. -..+.|+|+|++++++.+
T Consensus 300 -~~~~~T~spamdI~-~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~ 377 (460)
T cd01560 300 -ESLKQTLSPAMDIL-KSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREV 377 (460)
T ss_pred -CCCCCCcCchhhcC-CCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHH
Confidence 12467899999853 33333322111 00 156899999999999999
Q ss_pred HHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 413 SRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 413 ~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
++++|++++||||++++++.++.++ +++++|++.||||.||++.+.+.++
T Consensus 378 ~~~~G~~vdPhtAva~aa~~~~~~~--~~~~~V~l~Ta~p~Kf~~~v~~a~~ 427 (460)
T cd01560 378 YEETGYLIDPHTAVGVRAAERVRKS--PGTPGVVLSTAHPAKFPEAVKEALG 427 (460)
T ss_pred HHhcCEEECchHHHHHHHHHHHHhc--cCCCEEEEecCCcccCHHHHHHhhC
Confidence 9999999999999999999887654 4568899999999999999998875
No 80
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=4e-41 Score=336.73 Aligned_cols=291 Identities=27% Similarity=0.364 Sum_probs=210.8
Q ss_pred CCeEeccccchhhcCCCCCCCeEEEeeCCCCCC---CCccHHHHHHHHHHHHHcCCCeEEEEc--CCChHHHHHHHHHHH
Q 012341 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT---GAHKINNAVGQALLAKRLGKTRIIAET--GAGQHGVATATVCAR 198 (465)
Q Consensus 124 TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pT---GSfK~Rga~~~~~~a~~~g~~~~Vv~a--SsGNhg~AlA~aa~~ 198 (465)
|||+++++|++.++ .+.+||+|+|++||| ||||+|++.+++..+.+.+.. .|+++ |+||||.|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g----~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~~-~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLG----GKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGAD-TLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhC----CCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCCC-EEEECCCchhHHHHHHHHHHHH
Confidence 89999999988761 257999999999999 566999999999888887775 56677 689999999999999
Q ss_pred cCCeEEEEEcCCChh-----hHHHhHHHHHhcCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceEEeccCCCCCCchh
Q 012341 199 FGLQCIVYMGAQDME-----RQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPM 272 (465)
Q Consensus 199 ~Gi~~~Vv~P~~~~~-----~~~~k~~~~~~~GA~V~~v~~~~~-~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~~ 272 (465)
+|++|+||||...+. .+..|..+|+.+||+|+.++.... ...++..++.+.+.++ ....|++....+.||+.
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 153 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAK-GGKPYVIPAGGSEHPLG- 153 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHc-CCceEEecCCCCCCccc-
Confidence 999999999986431 124578889999999999985321 1222333333333333 22234432222224443
Q ss_pred HHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCeEe
Q 012341 273 MVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351 (465)
Q Consensus 273 ~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~~~ 351 (465)
..+|.+++.|+..|+.. .+..||+||+|+|+||+++|++.+++ .++.+|||+|++.++.. +..+ ....
T Consensus 154 --~~G~~t~~~Ei~~q~~~-~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~----~~~~----~~~~ 222 (307)
T cd06449 154 --GLGYVGFVLEIAQQEEE-LGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPE----KTKA----QVLR 222 (307)
T ss_pred --HHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchH----HHHH----HHHH
Confidence 36888899998887743 23369999999999999999999998 67899999999998732 1111 0000
Q ss_pred eccceeecccccCCCccCccccc-ccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccc-hHHHHHH
Q 012341 352 LHGALSYLLQNEDGQIIEPHSIS-AGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPAL-ETAHALA 429 (465)
Q Consensus 352 ~~~~~~~~~~~~~g~~~~~~tia-~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p-~sa~alA 429 (465)
.. ..+++ .|+. .......+...+.++++.|+|+|++++++++++++|++++| |||++++
T Consensus 223 ---------------~~-~~~~~~~g~~---~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~a 283 (307)
T cd06449 223 ---------------IA-QAKLAEEGLE---VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQ 283 (307)
T ss_pred ---------------HH-HHHHHHcCCC---CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHH
Confidence 00 01221 1211 11111223344567889999999999999999999999999 8999999
Q ss_pred HHHHhccc--CCCCCEEEEEeCCC
Q 012341 430 YLEKLCPT--LADGTKVVVNFSGR 451 (465)
Q Consensus 430 a~~~l~~~--~~~~~~VVvv~tG~ 451 (465)
++.++.++ ++++++||+|+||+
T Consensus 284 a~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 284 GMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred HHHHHHhcCCCCCCCeEEEEeCCC
Confidence 99998764 56788999999984
No 81
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=311.32 Aligned_cols=332 Identities=39% Similarity=0.535 Sum_probs=268.8
Q ss_pred HHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChH
Q 012341 109 QEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQH 188 (465)
Q Consensus 109 ~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNh 188 (465)
++++.++... +||||||++..+|.+.|+ ..++||.|.|...||||||++.|+.++-.++..|.++++.++++|+.
T Consensus 65 P~Ev~e~Y~~-~gRPTPL~RA~~LE~~L~----tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQW 139 (432)
T COG1350 65 PEEVREAYLQ-IGRPTPLIRAKNLEEALG----TPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQW 139 (432)
T ss_pred cHHHHHHHHH-hCCCCchhhhhhHHHHhC----CCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchH
Confidence 3345555444 469999999999999994 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCC---------------CCHHHHHHHHHHHHHHc
Q 012341 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGT---------------ATLKDATSEAIRDWVTN 253 (465)
Q Consensus 189 g~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~---------------~~~~da~~~a~~~~~~~ 253 (465)
|.|++.||+.+|++|+|||-..+-.+...+..+|+.+||+|+..+... +++--|+.++++..+++
T Consensus 140 GsAlslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~ 219 (432)
T COG1350 140 GSALSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKN 219 (432)
T ss_pred HHHHHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhC
Confidence 999999999999999999988654444556678999999999876431 12344677777776654
Q ss_pred cCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-----cCCCcEEEEE
Q 012341 254 VETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-----NDKDVRLIGV 328 (465)
Q Consensus 254 ~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-----~~p~~rvigV 328 (465)
++..|.++|+.| | |...|.++|.|+-.|+ ++.+..||++|-|||||+|++|+..-|. .....++|+|
T Consensus 220 -~~~kY~lGSVln-h-----vllhQTViGlEakkQl-e~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAv 291 (432)
T COG1350 220 -ENTKYSLGSVLN-H-----VLLHQTVIGLEAKKQL-EQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAV 291 (432)
T ss_pred -CCceecchhHHH-H-----HHHHHHHHhHHHHHHH-HhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEe
Confidence 467899988865 2 3368889999999887 6777789999999999999999976553 2344899999
Q ss_pred ecCCCCCCchhhhhhhccCCeEeeccc--------eeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEe
Q 012341 329 EAAGFGLDSGKHAATLSKGEVGVLHGA--------LSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNV 400 (465)
Q Consensus 329 e~~~~~~~~~~~~~sl~~G~~~~~~~~--------~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~V 400 (465)
+|..++ +|++|++..-.+. +.|.+-+ ...+|..-+.||.|.|+.|..+.+...++.+....
T Consensus 292 ep~a~P--------~lT~GeY~YD~gDtagltPllKMyTlGh---d~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay 360 (432)
T COG1350 292 EPKACP--------KLTKGEYRYDFGDTAGLTPLLKMYTLGH---DYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAY 360 (432)
T ss_pred CCccCC--------ccccceeeccCCchhccchhhhhhccCC---CccCCCcccccccccCcChHHHHHHHcCcccceec
Confidence 999874 6888877643321 1122211 13456777899999999988888888888899999
Q ss_pred CHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccC---CCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 401 TDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTL---ADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 401 sd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~---~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
+++|++++.+.+++.|||++.|+|++|+.++++.+.+. ++.+.|+|.+||||..|++.+.+++.
T Consensus 361 ~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL~~Y~~yl~ 427 (432)
T COG1350 361 DQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDLSAYDKYLE 427 (432)
T ss_pred ChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCceeEEEEeccCccccchhhHHHHhh
Confidence 99999999999999999999999999999998876432 34457889999999999999988764
No 82
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=321.30 Aligned_cols=294 Identities=25% Similarity=0.329 Sum_probs=225.9
Q ss_pred HhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCC----CeEEEEcCCChHHHH
Q 012341 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRIIAETGAGQHGVA 191 (465)
Q Consensus 116 i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~----~~~Vv~aSsGNhg~A 191 (465)
..+.+| +|||+++.++... ..++||+|+|.+||+||.|||.++.++..|.+.|. +.++++.||||+|.+
T Consensus 46 ~~~liG-~TPlv~ln~i~~g------~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGig 118 (362)
T KOG1252|consen 46 VRDLIG-NTPLVKLNKIAGG------CVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIG 118 (362)
T ss_pred HHHHhC-CCceEEeccccCC------ccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHH
Confidence 456777 8999999988654 37899999999999999999999999999988762 357999999999999
Q ss_pred HHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHH---HHHHHHHHHHHccCCceEEeccCCCCC
Q 012341 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD---ATSEAIRDWVTNVETTHYILGSVAGPH 268 (465)
Q Consensus 192 lA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~d---a~~~a~~~~~~~~~~~~y~~~s~~~~~ 268 (465)
+|++|+..|++|+++||+.- ...|+.+|++|||+|+.++.. ..++. +...+ ..+..+.. ..|++.|+.|+.
T Consensus 119 LA~~~a~~Gyk~i~tmP~~m---s~Ek~~~l~a~Gaeii~tp~a-~~~~~~e~ai~~a-~~l~~~~p-na~~l~Qf~np~ 192 (362)
T KOG1252|consen 119 LAYMAALRGYKCIITMPEKM---SKEKRILLRALGAEIILTPPA-AGMKGPESAIGKA-EELLNKTP-NAYILDQFHNPG 192 (362)
T ss_pred HHHHHHHcCceEEEEechhh---hHHHHHHHHHcCCEEEecChH-HccCChHHHHHHH-HHHHHhCC-ChHHHHHhcCCC
Confidence 99999999999999999953 345778899999999999864 22322 33333 33455444 468889997765
Q ss_pred CchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccC
Q 012341 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKG 347 (465)
Q Consensus 269 p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G 347 (465)
+. ..|+ ..+.+||+.|+.+.+|.||.++|+|||++|+.++++ .+|+++|++|+|..+.+.+ .+
T Consensus 193 Np-----~~hy---~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~--------~~ 256 (362)
T KOG1252|consen 193 NP-----LAHY---ETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLS--------GG 256 (362)
T ss_pred Cc-----cccc---ccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceecc--------CC
Confidence 53 2444 445566777777899999999999999999999988 7999999999999985311 11
Q ss_pred CeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccchHHHH
Q 012341 348 EVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHA 427 (465)
Q Consensus 348 ~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~a 427 (465)
.++ . ..+-| .|++|. ..| ..+....+++++.+.++|+..+.++|+.+|||+++.+|+++
T Consensus 257 ~~g----------------~-~~~~I-~GIGyg-~~p--~~ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan 315 (362)
T KOG1252|consen 257 KPG----------------P-TFHKI-QGIGYG-FIP--TTLDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGAN 315 (362)
T ss_pred CCC----------------C-Cccce-eccccC-cCc--cccchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHH
Confidence 110 0 11233 344432 111 23445566888999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCEEEEEe-CCCCCCCHHHH
Q 012341 428 LAYLEKLCPTLADGTKVVVNF-SGRGDKDVQTA 459 (465)
Q Consensus 428 lAa~~~l~~~~~~~~~VVvv~-tG~g~k~~~~v 459 (465)
++++++++++.....+++++. .+.|..|..++
T Consensus 316 ~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~ 348 (362)
T KOG1252|consen 316 VAAALKLAKRPENAGKLIVVTFPDFGERYLSTF 348 (362)
T ss_pred HHHHHHHHhccccCCcEEEEECCCcchhhhhhh
Confidence 999999987665555555444 77789998764
No 83
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-39 Score=300.68 Aligned_cols=313 Identities=20% Similarity=0.273 Sum_probs=238.5
Q ss_pred HHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcC---CCeEEEEcCCChHHHH
Q 012341 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG---KTRIIAETGAGQHGVA 191 (465)
Q Consensus 115 ~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g---~~~~Vv~aSsGNhg~A 191 (465)
-+.+.+| +|||+++..|++.. |++|+.|.|++||.||.|||.|++++..|.+.| +..+|++.++|++|.+
T Consensus 42 Gv~~~IG-nTpliri~sLs~aT------GcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIs 114 (391)
T KOG1481|consen 42 GVEGAIG-NTPLIRINSLSNAT------GCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGIS 114 (391)
T ss_pred hhHHhhC-CCceEEeecccccc------ccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchh
Confidence 5667787 89999999999885 999999999999999999999999999998876 3568999999999999
Q ss_pred HHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCC-----ceEEeccCC
Q 012341 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVET-----THYILGSVA 265 (465)
Q Consensus 192 lA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~-~~~da~~~a~~~~~~~~~~-----~~y~~~s~~ 265 (465)
+|..|+.+|++|+|+||++. ...|.+.++.+||+|..|++..- +-..-...+.+. .++..+ ..|+.+|+.
T Consensus 115 lA~v~~a~Gyk~~I~mPddq---s~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~-an~~~~~~ngi~g~fAdQFe 190 (391)
T KOG1481|consen 115 LAHVARALGYKCHIYMPDDQ---SQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRA-ANETPNASNGIRGWFADQFE 190 (391)
T ss_pred HHHhhhhcCcceEEECCChH---HHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHH-hhhcccccCCcccchhhhhc
Confidence 99999999999999999964 35588889999999999986431 111222222221 111111 236667877
Q ss_pred CCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCC-CcEEEEEecCCCCCCchhhhhh
Q 012341 266 GPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDK-DVRLIGVEAAGFGLDSGKHAAT 343 (465)
Q Consensus 266 ~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p-~~rvigVe~~~~~~~~~~~~~s 343 (465)
|.-+|. .|+ ..+.+|||.|..+..|++++.+|+|||++|+..+++ .++ .+++..++|.++.+.. .
T Consensus 191 N~AN~~-----aHy---etTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYn-----k 257 (391)
T KOG1481|consen 191 NVANWL-----AHY---ETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYN-----K 257 (391)
T ss_pred CHHHHH-----HHh---cCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhh-----h
Confidence 655542 333 334567788888899999999999999999999998 344 4889999999986421 2
Q ss_pred hccCCeEeeccceeecccccCCCc--cCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCccc
Q 012341 344 LSKGEVGVLHGALSYLLQNEDGQI--IEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPA 421 (465)
Q Consensus 344 l~~G~~~~~~~~~~~~~~~~~g~~--~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~ 421 (465)
...|.. |.....+|.. ...+||.+|++...+-.++ ...+..+|+.+.|+|++++++.+.|...+|++++
T Consensus 258 V~~GVm--------y~~~e~eG~r~r~q~dti~EGIGinRiT~Nf-~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvG 328 (391)
T KOG1481|consen 258 VNYGVM--------YDHIETEGTRRRNQVDTITEGIGINRITGNF-QMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVG 328 (391)
T ss_pred hhhhhh--------hhhhhhcCcccCCCcchhhhccccccccccc-ccchhhhhhheecChHHHHHHHHHhhhcCceEec
Confidence 222211 1111222322 2367888887644433222 2334457899999999999999999999999999
Q ss_pred chHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHH
Q 012341 422 LETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAI 460 (465)
Q Consensus 422 p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~ 460 (465)
.+++.+..++.++++.+++|.+||.++|++|.+++..+.
T Consensus 329 sSsa~N~VaAv~vAk~LgpG~~iVtilCDsG~rh~sk~~ 367 (391)
T KOG1481|consen 329 SSSALNCVAAVRVAKTLGPGHTIVTILCDSGSRHLSKLF 367 (391)
T ss_pred chhhHHHHHHHHHHHhcCCCceEEEEEeCCcchHHHHhc
Confidence 999999999999999999999999999999999887654
No 84
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.4e-38 Score=319.21 Aligned_cols=294 Identities=20% Similarity=0.271 Sum_probs=200.4
Q ss_pred HHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCC--CCccHHHHHHHHHHHHHcCCCeEE-EEcCCChHHHH
Q 012341 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT--GAHKINNAVGQALLAKRLGKTRII-AETGAGQHGVA 191 (465)
Q Consensus 115 ~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pT--GSfK~Rga~~~~~~a~~~g~~~~V-v~aSsGNhg~A 191 (465)
++.... ++|||+++++|++.. +.+||+|+|++||+ ||||+|++.+++..+.+.|.+.+| +++|+||||+|
T Consensus 14 ~~~l~~-~~TPl~~~~~l~~~~------g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~a 86 (329)
T PRK14045 14 RVELIP-WETPIQYLPNISREL------GADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFV 86 (329)
T ss_pred CcccCC-CCCCcccchhhHHHh------CCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHH
Confidence 354445 599999999998875 68999999999996 899999999999888888876544 26899999999
Q ss_pred HHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCC-CHHHHHHHHHHHHHHccCCceEEe-ccCCCCCC
Q 012341 192 TATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTA-TLKDATSEAIRDWVTNVETTHYIL-GSVAGPHP 269 (465)
Q Consensus 192 lA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~-~~~da~~~a~~~~~~~~~~~~y~~-~s~~~~~p 269 (465)
+|++|+.+|++|++|||...+ .+.|...++.+||+|+.++.... ...+...+..+++.++.. ..|++ ++.. +|
T Consensus 87 lA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~p~~~~--n~ 161 (329)
T PRK14045 87 TGLAAKKLGLDAVLVLRGKEE--LKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGR-KPYIIPPGGA--SP 161 (329)
T ss_pred HHHHHHHcCCeEEEEEeCCCC--CCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCC-CEEEECCCCC--ch
Confidence 999999999999999997532 23455668999999998874211 111222233333333322 34543 3332 33
Q ss_pred chhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCC
Q 012341 270 YPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGE 348 (465)
Q Consensus 270 ~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~ 348 (465)
.. ..+|.....|+.+|+.+ .+..+|+||+|+|||||++|++.+++ .+|++|||||++.+.. ..+...+....
T Consensus 162 ~~---~~g~~~~~~EI~~q~~~-~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~---~~~~~~~~~~~ 234 (329)
T PRK14045 162 VG---TLGYVRAVGEIATQVKK-LGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFG---EKMKEKVKNLV 234 (329)
T ss_pred hH---HHHHHHHHHHHHHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCH---HHHHHHHHHHH
Confidence 32 13444333466655532 22469999999999999999999998 7899999999997631 11111111000
Q ss_pred eEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHHHHHHHHhcCCcccc-hHHHH
Q 012341 349 VGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPAL-ETAHA 427 (465)
Q Consensus 349 ~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~~p-~sa~a 427 (465)
. ....+ .|+... .. ...+.+. ..+++..++ +|+++++++++++|||+.+| |||++
T Consensus 235 ~-------------------~~~~~-~g~~~~-~~-~~~~~d~-~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~ 290 (329)
T PRK14045 235 K-------------------KTKEL-LGVKVK-VQ-EPELYDY-SFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKA 290 (329)
T ss_pred H-------------------HHHHH-hCCCCC-cc-ceEeccc-ccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHH
Confidence 0 00000 011000 00 0111222 235555666 79999999999999999998 99999
Q ss_pred HHHHHHhcccCCCCCEEEEEeCCC
Q 012341 428 LAYLEKLCPTLADGTKVVVNFSGR 451 (465)
Q Consensus 428 lAa~~~l~~~~~~~~~VVvv~tG~ 451 (465)
++++++++++...+++||+||||+
T Consensus 291 ~~a~~~~~~~~~~~~~iv~ihtGG 314 (329)
T PRK14045 291 FYGLMDLAKKGELGEKILFIHTGG 314 (329)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCC
Confidence 999999987654478999999985
No 85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.1e-27 Score=229.17 Aligned_cols=291 Identities=27% Similarity=0.368 Sum_probs=209.6
Q ss_pred hhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCC--CCCccHHHHHHHHHHHHHcCCCeEEEEcCCC--hHHHHHH
Q 012341 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNH--TGAHKINNAVGQALLAKRLGKTRIIAETGAG--QHGVATA 193 (465)
Q Consensus 118 ~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~p--TGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsG--Nhg~AlA 193 (465)
+++..||||.+++++++++ +.+||+||||+.+ .|.+|.|+..+.+..+.+.|.+ ++|++++- ||.+++|
T Consensus 10 ~l~~~pTPiq~L~rls~~l------g~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~d-TlvT~GgiQSNh~r~tA 82 (323)
T COG2515 10 ELIFGPTPIQKLPRLSAHL------GVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGAD-TLVTYGGIQSNHVRQTA 82 (323)
T ss_pred ccCCCCChhhhHHHHHHhc------CeEEEEEcccccccccCccHHHHHHHHHhhhhhcCCc-EEEEecccchhHHHHHH
Confidence 3455799999999999987 7999999999965 5889999999999999988887 56677544 9999999
Q ss_pred HHHHHcCCeEEEEEcCCC-hhhHHHhHHHHHhcCCEEEEEcCCCCCH--HHHHHHHHHHHHHccCCceEEeccCCCCCCc
Q 012341 194 TVCARFGLQCIVYMGAQD-MERQALNVFRMRLLGAEVRAVHSGTATL--KDATSEAIRDWVTNVETTHYILGSVAGPHPY 270 (465)
Q Consensus 194 ~aa~~~Gi~~~Vv~P~~~-~~~~~~k~~~~~~~GA~V~~v~~~~~~~--~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~ 270 (465)
++|+++|++|+.++-... .-....|....+.+|++++.++.+. ++ .....+..++ +.+..+..|++.-.. .||+
T Consensus 83 avA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~-d~~~~~~~~~~~e~-~~~~g~kpyvIp~GG-~~~~ 159 (323)
T COG2515 83 AVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGT-DIGINASAEELAEE-VRKQGGKPYVIPEGG-SSPL 159 (323)
T ss_pred HHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCC-ChhhchhhHHHHHH-HHhcCCCCcEeccCC-cCcc
Confidence 999999999999996532 1113458888999999999999763 22 2222223333 333455567664333 4665
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCCCCCCchhhhhhhccCCe
Q 012341 271 PMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAGFGLDSGKHAATLSKGEV 349 (465)
Q Consensus 271 ~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~~~~~~~~~~~sl~~G~~ 349 (465)
.. -|+.....|+..|. +++ -.+|.|||++|+|||.||+..++. ..++.+|||+....... ...+-+.
T Consensus 160 g~---lGyv~~a~Ei~~Q~-~~~-~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~---~~~~qv~---- 227 (323)
T COG2515 160 GA---LGYVRLALEIAEQA-EQL-LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPE---KLKEQVL---- 227 (323)
T ss_pred cc---ccHHHHHHHHHHHH-hhc-cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHH---HHHHHHH----
Confidence 41 34555567776664 332 479999999999999999999987 67999999999887631 1110000
Q ss_pred EeeccceeecccccCCCccCcccccccCCCCCCCCchh-hhhccCCceEEEeCHHHHHHHHHHHHHhcCCc-ccchHHHH
Q 012341 350 GVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHS-FLKDEGRAEYYNVTDDEALEAFKRSSRLEGII-PALETAHA 427 (465)
Q Consensus 350 ~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~-~l~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~-~~p~sa~a 427 (465)
. -..+.+.-++ .+.+.. .+...+....|.++.+|.+++++.+++.|||. ++.|++++
T Consensus 228 ~------------------L~~~~a~~~~---~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKa 286 (323)
T COG2515 228 N------------------LAQATAELLG---LGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKA 286 (323)
T ss_pred H------------------HHHHHHHHcC---CCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHH
Confidence 0 0011111111 111111 12333445668999999999999999999999 99999999
Q ss_pred HHHHHHhcc--cCCCCCEEEEEeCCC
Q 012341 428 LAYLEKLCP--TLADGTKVVVNFSGR 451 (465)
Q Consensus 428 lAa~~~l~~--~~~~~~~VVvv~tG~ 451 (465)
+++++++++ +++++.+|+++|||+
T Consensus 287 m~Glid~~~k~~f~~~~~vLfiHtGG 312 (323)
T COG2515 287 MYGLIDLARKGEFPDGSPVLFIHTGG 312 (323)
T ss_pred HHHHHHHHhcccCCCCCceEEEEcCC
Confidence 999999875 577788899999995
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.87 E-value=2.5e-20 Score=177.59 Aligned_cols=316 Identities=17% Similarity=0.181 Sum_probs=225.8
Q ss_pred CCCeEeccccchhhcC--CCCCCCeEEEeeCCCCC-CCCccHHHHHHHHH-HHH----HcC-------------------
Q 012341 123 ETPLYFAERLTEHYRR--PNGGGPHIYLKREDLNH-TGAHKINNAVGQAL-LAK----RLG------------------- 175 (465)
Q Consensus 123 ~TPL~~l~~Ls~~l~~--~~~~g~~i~lK~E~~~p-TGSfK~Rga~~~~~-~a~----~~g------------------- 175 (465)
++||+..+.+.+.+.+ ++....++|+|++++-| +||.|.||..+.++ +|. +.|
T Consensus 78 ES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~F 157 (443)
T COG3048 78 ESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDF 157 (443)
T ss_pred ccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHHHHHH
Confidence 5788888765544432 12234589999999999 79999998766543 332 222
Q ss_pred -CCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 012341 176 -KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (465)
Q Consensus 176 -~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~ 254 (465)
.+.-|...|+||.|.++....+.+|++++|.|..++ .++|...+|..|.+|+..+. ++..++++-.++ .++
T Consensus 158 Fs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADA---r~WKKd~LRs~gV~ViEYe~---DY~~AVeeGRk~-a~~- 229 (443)
T COG3048 158 FSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADA---RAWKKDKLRSHGVTVVEYEQ---DYGVAVEEGRKE-AES- 229 (443)
T ss_pred HHhheEeecccCccceehhhhhhhhcceEEEEecchH---HHHHHHHHHhcCceEEEecc---hhhHHHHHhhhh-hcc-
Confidence 123577899999999999999999999999998876 68899999999999999985 456666655443 233
Q ss_pred CCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHhHHhh--cCCCcEEEEE
Q 012341 255 ETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG----GKPDVLIACVGGGSNAMGLFHEFV--NDKDVRLIGV 328 (465)
Q Consensus 255 ~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g----~~~D~vvvpvG~GG~~aGi~~~~~--~~p~~rvigV 328 (465)
+...|+++..++.+-| .||.+++..+-.|+.++-- ..|-.|..|+|-||.-.|++.++| -..++.++-+
T Consensus 230 DP~c~FiDDE~S~~LF-----LGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFa 304 (443)
T COG3048 230 DPNCFFIDDENSRTLF-----LGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFA 304 (443)
T ss_pred CCceEEecccchhhhh-----hhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEe
Confidence 3345666655554443 5788888887778765421 257789999999999999999987 3678899999
Q ss_pred ecCCCCCCchhhhhhhccCCeEeeccceeecccccCCCccCcccccccCCCCCCCCchhhhhccCCceEEEeCHHHHHHH
Q 012341 329 EAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 408 (465)
Q Consensus 329 e~~~~~~~~~~~~~sl~~G~~~~~~~~~~~~~~~~~g~~~~~~tia~gl~~~~vg~~~~~l~~~~~~~~~~Vsd~e~~~a 408 (465)
||..++ .|..-+.+| +|...+...... .-.|-+|||.+...+--...+.+..++..++|+|+..++.
T Consensus 305 EPthsP----cMlLGv~tG----lHe~ISVqdiGi-----dn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~l 371 (443)
T COG3048 305 EPTHSP----CMLLGVYTG----LHEQISVQDIGI-----DNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDL 371 (443)
T ss_pred cCCCCh----HHHHhhhhc----cccceeeEeecc-----cccccccceeecCccchHHHHHHHHhCCcEEechHHHHHH
Confidence 998873 454444444 333222222111 2346788887533322223455566789999999999999
Q ss_pred HHHHHHhcCCcccchHHHHHHHHHHhccc---------CC----CCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 409 FKRSSRLEGIIPALETAHALAYLEKLCPT---------LA----DGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 409 ~~~l~~~eGi~~~p~sa~alAa~~~l~~~---------~~----~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
...|++.||+..+|++-+++++..++.+. +. ....-+++.||++-.-.+.++.++.
T Consensus 372 L~~L~~~e~~rlEPSalAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~MVPeeeM~~yl~ 440 (443)
T COG3048 372 LGWLAQEEGIRLEPSALAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGMVPEEEMEAYLA 440 (443)
T ss_pred HHHHHHhcCcccCchhhhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCcCCHHHHHHHHh
Confidence 99999999999999998888877665421 10 2335689999988887777777653
No 87
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0013 Score=61.18 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=58.9
Q ss_pred eEEEeCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcccCCCCCEEEEEeCCCCCCCHHHHHHHhc
Q 012341 396 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464 (465)
Q Consensus 396 ~~~~Vsd~e~~~a~~~l~~~eGi~~~p~sa~alAa~~~l~~~~~~~~~VVvv~tG~g~k~~~~v~~~~~ 464 (465)
...+||++|+.++|...|+..+++.+||||+|+-...+...+-.++-.++++.|.|+.|+.+.+...+.
T Consensus 147 tse~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt~ps~~~i~lstAh~aKFa~AV~~Al~ 215 (266)
T KOG2616|consen 147 TSERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKTQPSIPYICLSTAHPAKFAEAVNAALS 215 (266)
T ss_pred hhhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhccCCCCceEEecccChhhhhHHHHHHhc
Confidence 346799999999999999999999999999999877776554345667899999999999999987653
No 88
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=94.87 E-value=0.031 Score=44.33 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=22.9
Q ss_pred ccCCCCccccccchhH------------HHHHHHHHHHHhcCCchH-HHHHHHHHhh
Q 012341 75 RFGRFGGKFVPETLMY------------ALSELESALHKLADDRDF-QEELSGILRD 118 (465)
Q Consensus 75 ~~~~~gG~~~P~~~~~------------~~~~i~~a~~~~~~~~~~-~~~l~~~i~~ 118 (465)
..+.+||||||+.++. ++.+|+....+.+.++++ .++|+++|.+
T Consensus 21 GlA~DGGLyvP~~iP~l~~~~l~~l~~~sy~elA~~il~~f~~~di~~~~L~~ii~~ 77 (79)
T PF14821_consen 21 GLAPDGGLYVPEEIPKLSKEELEELKNLSYAELAFEILSPFLGDDIPEEELKEIIEK 77 (79)
T ss_dssp -SBTTSB-EEESS-----HHHHHHHTTS-HHHHHHHHHHHHCCCCS-HHHHHHHHHH
T ss_pred CCCCCCeeEecCcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 4589999999998732 445555555554443333 3345555543
No 89
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=81.01 E-value=83 Score=34.25 Aligned_cols=83 Identities=17% Similarity=0.163 Sum_probs=52.5
Q ss_pred hHHHHHHHHHhhhcCCCCCeEeccccch--------hhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCe
Q 012341 107 DFQEELSGILRDYVGRETPLYFAERLTE--------HYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTR 178 (465)
Q Consensus 107 ~~~~~l~~~i~~~vg~~TPL~~l~~Ls~--------~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~ 178 (465)
+|.+++-..++... |+=++.++.++. +| ..++-+=.+|.|-||+.=.-+.++.+....+.=.+.
T Consensus 227 ~f~defv~av~~~~--P~~~Iq~EDf~~~naf~iL~ky------r~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~ 298 (559)
T PTZ00317 227 ELLDEFMEAVSSRW--PNAVVQFEDFSNNHCFDLLERY------QNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQ 298 (559)
T ss_pred HHHHHHHHHHHHhC--CCeEEehhhcCCccHHHHHHHh------ccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhc
Confidence 34445555565555 445888876543 23 234666788888888866666666655443322344
Q ss_pred EEEEcCCChHHHHHHHHHH
Q 012341 179 IIAETGAGQHGVATATVCA 197 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~ 197 (465)
.|+..++|..|.++|....
T Consensus 299 riv~~GAGsAgiGia~ll~ 317 (559)
T PTZ00317 299 RIVFFGAGSAAIGVANNIA 317 (559)
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 5777899999999887754
No 90
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=80.81 E-value=15 Score=38.08 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=64.2
Q ss_pred EEEcCCC-hHHHHHHHHHHHcCCeEEEEEcC-CCh-hhHHHhHHHHHhcCC-EEEEEcCCCCCHH-HHHHHHHHHHHHcc
Q 012341 180 IAETGAG-QHGVATATVCARFGLQCIVYMGA-QDM-ERQALNVFRMRLLGA-EVRAVHSGTATLK-DATSEAIRDWVTNV 254 (465)
Q Consensus 180 Vv~aSsG-Nhg~AlA~aa~~~Gi~~~Vv~P~-~~~-~~~~~k~~~~~~~GA-~V~~v~~~~~~~~-da~~~a~~~~~~~~ 254 (465)
|+.+|+| ++...+.+...+.+.+++.|.-+ +-. +..+.-.+....+|| +++.++.. +.|- |.+..+++ .+.
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r-~ef~~~~i~~aI~---anA 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR-DEFAEDYIFPAIK---ANA 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H-HHHHHHTHHHHHH---TT-
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH-HHHHHHHHHHHHH---HHH
Confidence 4678888 89999999999988999888854 111 112233345778899 89888742 1121 22222222 111
Q ss_pred -CCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEE-cCCCchhHHHHhHHhh-cCCCcEEEE
Q 012341 255 -ETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIA-CVGGGSNAMGLFHEFV-NDKDVRLIG 327 (465)
Q Consensus 255 -~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvv-pvG~GG~~aGi~~~~~-~~p~~rvig 327 (465)
....|.+++. --+ ..++..+ -++.++.+ .++|.- |+|-|-...=.-.+++ .+|+.+||+
T Consensus 77 ~Yeg~YpL~ts----l~R-------plIa~~~-v~~A~~~g--a~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 77 LYEGRYPLSTS----LAR-------PLIAKKL-VEVAREEG--ADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -BTTTB--CCC----CHH-------HHHHHHH-HHHHHHHT---SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HhCCCcccccc----chH-------HHHHHHH-HHHHHHcC--CeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 1223433221 111 1222332 23444554 688887 4455555544434444 688888875
No 91
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=78.67 E-value=22 Score=31.09 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=51.4
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCC-ChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~-~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
..+|+.+++.-|.++|..-...|-..++++... +.+..+.....++..|.++..++.+. ...+..+..++...+....
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDL-SDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESET-TSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 467888889999999999777777666666554 22223334456778899988887542 2344455555554433333
Q ss_pred ceEEe
Q 012341 257 THYIL 261 (465)
Q Consensus 257 ~~y~~ 261 (465)
-..++
T Consensus 81 ld~li 85 (167)
T PF00106_consen 81 LDILI 85 (167)
T ss_dssp ESEEE
T ss_pred ccccc
Confidence 33333
No 92
>PRK06128 oxidoreductase; Provisional
Probab=71.92 E-value=49 Score=32.49 Aligned_cols=75 Identities=16% Similarity=0.102 Sum_probs=46.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+.++|+.++|--|.++|......|.++++..........+.....++..|.++..+..+-.+ .+.+.+++++..+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~ 130 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD-EAFCRQLVERAVK 130 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHHHH
Confidence 35788888899999999998889999877653322111222334566778887766543222 3334444444433
No 93
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=71.68 E-value=18 Score=34.12 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=39.7
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEc
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~ 233 (465)
++|+..+|+.|..++.+....+.++++++...+ ......++..|++++..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~----~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS----SDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH----HHHHHHHHHTTTEEEES-
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc----hhhhhhhhcccceEeecc
Confidence 356788999999999998889999999997753 223455888999988543
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=69.88 E-value=29 Score=26.84 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=35.2
Q ss_pred EcCCChHHHHHHHHHHHcCCeEEEEEcCCChh------hHHHhHHHHHhcCCEEEE
Q 012341 182 ETGAGQHGVATATVCARFGLQCIVYMGAQDME------RQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 182 ~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~------~~~~k~~~~~~~GA~V~~ 231 (465)
.-++|..|.-+|.+.+.+|.+++++....... ....-.+.++..|.+++.
T Consensus 4 ViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 4 VIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 45799999999999999999999998763221 122233456666766654
No 95
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=68.86 E-value=33 Score=30.67 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=51.5
Q ss_pred CCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC------CChhhHHHhHHHHHhcCCE
Q 012341 155 HTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGA------QDMERQALNVFRMRLLGAE 228 (465)
Q Consensus 155 pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~------~~~~~~~~k~~~~~~~GA~ 228 (465)
|.--+-++.....+.+|++.+-+.+||++++|.++.-++-+... .+++++|.-. +..+..+.-...++..|++
T Consensus 7 pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~ 85 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAK 85 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCce
Confidence 33345566667777889999988999999999998876655332 2787777632 2222223334558888998
Q ss_pred EEEE
Q 012341 229 VRAV 232 (465)
Q Consensus 229 V~~v 232 (465)
|..-
T Consensus 86 v~~~ 89 (186)
T COG1751 86 VLTQ 89 (186)
T ss_pred eeee
Confidence 8753
No 96
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=68.21 E-value=88 Score=29.55 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=44.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
++++|+.++|.-|.++|......|.+++++... .++.+.....++..|.++..+..+-.+ .+...++++....
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 83 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRD--PAKLAAAAESLKGQGLSAHALAFDVTD-HDAVRAAIDAFEA 83 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCceEEEEEccCCC-HHHHHHHHHHHHH
Confidence 457888888999999999988889986665432 221122233456667777766543222 3334444444333
No 97
>PRK13529 malate dehydrogenase; Provisional
Probab=65.15 E-value=2.1e+02 Score=31.19 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhcCCCCCeEeccccch--------hhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeE
Q 012341 108 FQEELSGILRDYVGRETPLYFAERLTE--------HYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRI 179 (465)
Q Consensus 108 ~~~~l~~~i~~~vg~~TPL~~l~~Ls~--------~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~ 179 (465)
|.+++-..++... |+=++.++.++. ++ ..++-+=.+|.|-||+.=.-+.++.+....+.=.+..
T Consensus 226 f~defv~av~~~~--P~~~I~~EDf~~~~af~iL~ry------r~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~r 297 (563)
T PRK13529 226 FVDEFVQAVKRRF--PNALLQFEDFAQKNARRILERY------RDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQR 297 (563)
T ss_pred HHHHHHHHHHHhC--CCeEEehhhcCCchHHHHHHHh------ccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcE
Confidence 3444445555554 444888876543 23 2356667888888988666666665554432223445
Q ss_pred EEEcCCChHHHHHHHHHHH
Q 012341 180 IAETGAGQHGVATATVCAR 198 (465)
Q Consensus 180 Vv~aSsGNhg~AlA~aa~~ 198 (465)
|+..++|..|.++|-....
T Consensus 298 iv~~GAGsAgiGia~ll~~ 316 (563)
T PRK13529 298 IVFLGAGSAGCGIADQIVA 316 (563)
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 6678999999998887544
No 98
>PRK07109 short chain dehydrogenase; Provisional
Probab=64.38 E-value=88 Score=31.46 Aligned_cols=74 Identities=22% Similarity=0.190 Sum_probs=46.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+.++|+.++|--|.++|......|.+++++... .+..+.....++..|+++..+..+-.+ .+.+..+.+...++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~--~~~l~~~~~~l~~~g~~~~~v~~Dv~d-~~~v~~~~~~~~~~ 82 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARG--EEGLEALAAEIRAAGGEALAVVADVAD-AEAVQAAADRAEEE 82 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHcCCcEEEEEecCCC-HHHHHHHHHHHHHH
Confidence 457888888899999999988899987776543 222222334566788888766544323 33344444444333
No 99
>PRK12937 short chain dehydrogenase; Provisional
Probab=62.72 E-value=1.1e+02 Score=28.55 Aligned_cols=84 Identities=17% Similarity=0.104 Sum_probs=49.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.++|.-|.++|..-...|.+++++..... .....-...++.+|.++..+..+-.+ .+...++++...++...
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 83 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSA-AAADELVAEIEAAGGRAIAVQADVAD-AAAVTRLFDAAETAFGR 83 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCH-HHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 35778888899999999998889998877654322 11122233456678888776644222 33344455544433333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-.+++.
T Consensus 84 id~vi~ 89 (245)
T PRK12937 84 IDVLVN 89 (245)
T ss_pred CCEEEE
Confidence 334443
No 100
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=62.03 E-value=1e+02 Score=29.41 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=43.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~ 251 (465)
+..+|+.++|.-|.++|......|.+++++-.. .+..+.-...++..|.++..+..+-.+ .+....+++...
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~ 82 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDIN--QELVDKGLAAYRELGIEAHGYVCDVTD-EDGVQAMVSQIE 82 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHH
Confidence 457888888899999999988899987666322 222222233455668777766544222 333444444433
No 101
>PRK12743 oxidoreductase; Provisional
Probab=61.63 E-value=1.1e+02 Score=29.12 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=38.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~ 235 (465)
.++|+.++|.-|.++|......|.+++++....... .+.-...++.+|.++..+..+
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D 60 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG-AKETAEEVRSHGVRAEIRQLD 60 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHHHhcCCceEEEEcc
Confidence 467888888999999999989999887775432211 111223466678887766544
No 102
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=61.48 E-value=1e+02 Score=29.42 Aligned_cols=84 Identities=11% Similarity=0.137 Sum_probs=46.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHH-hcCCEEEEEcCCCCCHHHHHHHHHHHHHHccC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAVHSGTATLKDATSEAIRDWVTNVE 255 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~-~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~ 255 (465)
+.++|+.+++.-|.++|......|.+++++..... +..+.....++ ..|.++..+..+-.+ .+...+.++...++..
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 86 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNV-EEANKIAEDLEQKYGIKAKAYPLNILE-PETYKELFKKIDEDFD 86 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHhcC
Confidence 45778888888999999998889998776654322 11111112222 357666666544323 3334445554443333
Q ss_pred CceEEec
Q 012341 256 TTHYILG 262 (465)
Q Consensus 256 ~~~y~~~ 262 (465)
.-.++++
T Consensus 87 ~id~lv~ 93 (260)
T PRK08416 87 RVDFFIS 93 (260)
T ss_pred CccEEEE
Confidence 3334443
No 103
>PRK08862 short chain dehydrogenase; Provisional
Probab=61.31 E-value=1.1e+02 Score=28.64 Aligned_cols=73 Identities=11% Similarity=0.054 Sum_probs=43.2
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
..+|+..++.-|.++|......|.+++++-.. .+..+...+.++..|.+++.+..+..+ .+.....++...++
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~--~~~l~~~~~~i~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 79 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQD--QSALKDTYEQCSALTDNVYSFQLKDFS-QESIRHLFDAIEQQ 79 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCCeEEEEccCCC-HHHHHHHHHHHHHH
Confidence 46677777789999999999999987665332 222222344566678777655433222 33344444544443
No 104
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=61.19 E-value=91 Score=29.60 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=44.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+..+|+.+++.-|.++|....+.|.+++++-.... +.....++..|.++..+..+-.+ .+.....++...+.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 80 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA----PETQAQVEALGRKFHFITADLIQ-QKDIDSIVSQAVEV 80 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH----HHHHHHHHHcCCeEEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 45788888889999999998899999877643221 11223456678777665543223 33344555544433
No 105
>PRK12744 short chain dehydrogenase; Provisional
Probab=60.59 E-value=1.1e+02 Score=28.94 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=43.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC--CChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA--QDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~--~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~ 251 (465)
+.++|+.++|.-|.++|..-...|.+++++... ...+..+.....++..|.++..+..+-.+ .+...+.++...
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~ 84 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTT-AAAVEKLFDDAK 84 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCC-HHHHHHHHHHHH
Confidence 357788888889999999988889996666532 12121222233455668777666544322 333444444433
No 106
>PRK06194 hypothetical protein; Provisional
Probab=60.33 E-value=1.3e+02 Score=28.85 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=47.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.++|.-|.++|......|.+++++-.. .+..+.....+...|.++..+..+-.+ .+...+.++...+....
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQ--QDALDRAVAELRAQGAEVLGVRTDVSD-AAQVEALADAALERFGA 83 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC--hHHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 457888888999999999988889987666432 111222233455557788766654333 23344444443333333
Q ss_pred ceEEe
Q 012341 257 THYIL 261 (465)
Q Consensus 257 ~~y~~ 261 (465)
-.+++
T Consensus 84 id~vi 88 (287)
T PRK06194 84 VHLLF 88 (287)
T ss_pred CCEEE
Confidence 23444
No 107
>PRK05370 argininosuccinate synthase; Validated
Probab=60.16 E-value=1.2e+02 Score=31.95 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCC-hHHHHHHHHHHHcCCeEEEEEcCC-C--hhhHHHhHHHHHhcCC-EEEEEcC
Q 012341 175 GKTRIIAETGAG-QHGVATATVCARFGLQCIVYMGAQ-D--MERQALNVFRMRLLGA-EVRAVHS 234 (465)
Q Consensus 175 g~~~~Vv~aSsG-Nhg~AlA~aa~~~Gi~~~Vv~P~~-~--~~~~~~k~~~~~~~GA-~V~~v~~ 234 (465)
..+++|+++|+| ++...+-|.-.. |++++.|.-+. . .+....-.+....+|| +++.++.
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDl 73 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDC 73 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEecc
Confidence 455688899988 688888888766 99988888542 1 1111223345778899 6777764
No 108
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=58.88 E-value=1.5e+02 Score=28.12 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=45.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~ 254 (465)
+.++|+..+|.-|.++|..-...|.+++++..... .+.....+...|.++..+..+-.+ .+.....+++..+..
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTN---WDETRRLIEKEGRKVTFVQVDLTK-PESAEKVVKEALEEF 89 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcH---HHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHHHc
Confidence 45778888889999999998889999888765421 111223355567776655543223 333444555544443
No 109
>PRK12939 short chain dehydrogenase; Provisional
Probab=58.78 E-value=1.6e+02 Score=27.49 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=41.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~ 249 (465)
+.++|+.++|.-|.++|......|.+++++... .+..+.....++..|.++..+..+-.+ .+.....++.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~ 77 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGL--AAEARELAAALEAAGGRAHAIAADLAD-PASVQRFFDA 77 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHH
Confidence 457788888999999999988899987666322 221122223455567777666543222 3334344443
No 110
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=58.78 E-value=1.7e+02 Score=28.01 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=47.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+..+|+.++|.-|.++|......|.+++++-.... ..+.....++..|.++..+..+-.+ .+.+...++...++...
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQE--KAEAVVAEIKAAGGEALAVKADVLD-KESLEQARQQILEDFGP 87 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 45678888889999999998889998777654321 1122233455567777666543222 23333444444333333
Q ss_pred ceEEe
Q 012341 257 THYIL 261 (465)
Q Consensus 257 ~~y~~ 261 (465)
-.+++
T Consensus 88 id~li 92 (278)
T PRK08277 88 CDILI 92 (278)
T ss_pred CCEEE
Confidence 33444
No 111
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.34 E-value=1.6e+02 Score=27.61 Aligned_cols=57 Identities=18% Similarity=0.069 Sum_probs=39.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~ 235 (465)
+.++|+.++|.-|.+++......|.+++++..... ....-...++..|.++..+..+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQD--GANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChH--HHHHHHHHHHhcCceEEEEECC
Confidence 45788898999999999999999998776654321 1222233456678888766644
No 112
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=57.89 E-value=1.3e+02 Score=28.08 Aligned_cols=81 Identities=10% Similarity=0.068 Sum_probs=47.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+..+|.-|.++|......|.+++++-.... ......++.++.++..+..+-.+ .+.....++...+....
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~----~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 80 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP----SETQQQVEALGRRFLSLTADLSD-IEAIKALVDSAVEEFGH 80 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH----HHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHHHHHcCC
Confidence 45778888888999999998889998777653221 11223455667776666544323 33344444444333333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
...+++
T Consensus 81 ~d~li~ 86 (248)
T TIGR01832 81 IDILVN 86 (248)
T ss_pred CCEEEE
Confidence 334443
No 113
>PRK06139 short chain dehydrogenase; Provisional
Probab=57.87 E-value=1e+02 Score=31.08 Aligned_cols=83 Identities=19% Similarity=0.135 Sum_probs=48.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.+||+..||--|.++|......|.+++++-.. .+..+.-...++..|+++..+..+-.+ .+.+.++.+...+....
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~--~~~l~~~~~~~~~~g~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARD--EEALQAVAEECRALGAEVLVVPTDVTD-ADQVKALATQAASFGGR 84 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEEeeCCC-HHHHHHHHHHHHHhcCC
Confidence 457788888889999999988999987766533 222222234566788887655533222 33444454444333222
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-.++++
T Consensus 85 iD~lVn 90 (330)
T PRK06139 85 IDVWVN 90 (330)
T ss_pred CCEEEE
Confidence 234443
No 114
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=57.52 E-value=1.1e+02 Score=32.92 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=36.6
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
.++.-+.|..|.+.+..++.+|-.++++-.. ..+.++.+.+|++.+.++.
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~------~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTR------PEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCC------HHHHHHHHHcCCeEEeccc
Confidence 3445679999999999999999875554332 1245668889999877663
No 115
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=57.03 E-value=1.5e+02 Score=27.71 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=48.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+..+|+.++|.-|.++|......|.+++++..... .+.......++..|.+++....+-.+ .+...+++++..+....
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 81 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS-PRRVKWLEDQKALGFDFIASEGNVGD-WDSTKAAFDKVKAEVGE 81 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh-HHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHHhCC
Confidence 34678888899999999998889988766543222 11222334456678887765543223 23344444443333333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-.++++
T Consensus 82 id~li~ 87 (246)
T PRK12938 82 IDVLVN 87 (246)
T ss_pred CCEEEE
Confidence 334443
No 116
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=56.95 E-value=69 Score=31.68 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=34.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+.++|...+|--|.+++..|+.+|.++++.... ..|...++.+|++.+.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s------~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS------DEKVAYLKKLGFDVAF 188 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCCEEE
Confidence 345555557889999999999999986655433 2255567889996554
No 117
>PRK07478 short chain dehydrogenase; Provisional
Probab=56.36 E-value=1.4e+02 Score=28.13 Aligned_cols=83 Identities=18% Similarity=0.114 Sum_probs=47.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+..+|+.++|.-|.++|..-...|.+++++.... +..+.-...++..|.++..+..+-.+ .+...+.++...++...
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ--AELDQLVAEIRAEGGEAVALAGDVRD-EAYAKALVALAVERFGG 83 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHhcCC
Confidence 3577888888899999999888999876665331 11111223456667777666543223 33344555554443333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-..+++
T Consensus 84 id~li~ 89 (254)
T PRK07478 84 LDIAFN 89 (254)
T ss_pred CCEEEE
Confidence 234443
No 118
>PRK06182 short chain dehydrogenase; Validated
Probab=56.23 E-value=1.3e+02 Score=28.88 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=46.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.++|.-|.++|......|.+++++.... .++..+...+.+++.++.. + .+.....++...++...
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~------~~l~~~~~~~~~~~~~Dv~--~-~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRV------DKMEDLASLGVHPLSLDVT--D-EASIKAAVDTIIAEEGR 74 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHhCCCeEEEeeCC--C-HHHHHHHHHHHHHhcCC
Confidence 3577888888999999999888899887765431 1223344456676666542 2 33344455544443333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-.++++
T Consensus 75 id~li~ 80 (273)
T PRK06182 75 IDVLVN 80 (273)
T ss_pred CCEEEE
Confidence 344444
No 119
>PRK08589 short chain dehydrogenase; Validated
Probab=55.89 E-value=1.5e+02 Score=28.53 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=47.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.+++--|.++|......|.+++++-.. . ........++..|.++..+..+-.+ .+....+++...++...
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~--~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIA-E--AVSETVDKIKSNGGKAKAYHVDISD-EQQVKDFASEIKEQFGR 82 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-H--HHHHHHHHHHhcCCeEEEEEeecCC-HHHHHHHHHHHHHHcCC
Confidence 356788888889999999888889988877544 2 1222234455667666655533222 33344455554444333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-..+++
T Consensus 83 id~li~ 88 (272)
T PRK08589 83 VDVLFN 88 (272)
T ss_pred cCEEEE
Confidence 334443
No 120
>PRK08226 short chain dehydrogenase; Provisional
Probab=55.88 E-value=1.4e+02 Score=28.31 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=43.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+..+|+.++|.-|.++|......|.+++++-.... .......+...|.++..+..+-.+ .+.....++...++
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~---~~~~~~~~~~~~~~~~~~~~Dl~~-~~~v~~~~~~~~~~ 79 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPE---IEKLADELCGRGHRCTAVVADVRD-PASVAAAIKRAKEK 79 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH---HHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHHH
Confidence 45788888999999999998888998766643321 111223344457776655543222 33344444444433
No 121
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=55.71 E-value=1.3e+02 Score=28.42 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=47.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.++|.-|.++|......|.+++++-.... .......+...|.++..+..+-.+. +.....++...++...
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL---VHEVAAELRAAGGEALALTADLETY-AGAQAAMAAAVEAFGR 84 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH---HHHHHHHHHhcCCeEEEEEEeCCCH-HHHHHHHHHHHHHcCC
Confidence 45788888899999999998889998776643311 1122234556677776555332232 3334444444433333
Q ss_pred ceEEecc
Q 012341 257 THYILGS 263 (465)
Q Consensus 257 ~~y~~~s 263 (465)
-..+++.
T Consensus 85 id~lv~n 91 (260)
T PRK12823 85 IDVLINN 91 (260)
T ss_pred CeEEEEC
Confidence 3344443
No 122
>PRK05866 short chain dehydrogenase; Provisional
Probab=55.69 E-value=1.8e+02 Score=28.43 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=47.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~ 257 (465)
.++|+.++|.-|.++|......|.+++++-... +..+.....+...|.++..+..+-.+ .+...+.++...++...-
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~--~~l~~~~~~l~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~~g~i 118 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARRE--DLLDAVADRITRAGGDAMAVPCDLSD-LDAVDALVADVEKRIGGV 118 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence 577888889999999999888899877765432 11122223344557666655543222 333444555443333333
Q ss_pred eEEecc
Q 012341 258 HYILGS 263 (465)
Q Consensus 258 ~y~~~s 263 (465)
.++++.
T Consensus 119 d~li~~ 124 (293)
T PRK05866 119 DILINN 124 (293)
T ss_pred CEEEEC
Confidence 444443
No 123
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=55.65 E-value=1.8e+02 Score=27.26 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=44.4
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
..+|+.++|.-|.++|......|.+++++-.. ....+.....++..|.++..+..+-.+ .+...++++...++
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLN--EETAKETAKEINQAGGKAVAYKLDVSD-KDQVFSAIDQAAEK 74 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 36778888999999999988899986665433 111222234466678777666543222 34444455544443
No 124
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=54.94 E-value=84 Score=30.86 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=34.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+.++|...+|.-|.++...|+.+|.+++++... +.|...++.+|++-+.
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s------~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS------DDKVAWLKELGFDAVF 193 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCCEEE
Confidence 345565657899999999999999986555432 2255668889996544
No 125
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.66 E-value=1.7e+02 Score=27.34 Aligned_cols=74 Identities=15% Similarity=0.084 Sum_probs=44.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+.++|+.++|.-|.++|..-...|.++++++...... .+.-...++..|.++..+..+-.+ .+....+++...+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 78 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKA-AEETAEEIEALGRKALAVKANVGD-VEKIKEMFAQIDE 78 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHH
Confidence 3578888889999999999888899887654332211 112223466678887776643222 2333444444333
No 126
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=54.54 E-value=1.9e+02 Score=27.38 Aligned_cols=81 Identities=10% Similarity=0.051 Sum_probs=47.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+..+|+.++|.-|.++|......|.+++++-.... ......++.+|.++..+..+-.+ .+.....++...++...
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP----TETIEQVTALGRRFLSLTADLRK-IDGIPALLERAVAEFGH 85 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch----HHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHHhCC
Confidence 35788898999999999998899998766522211 12233455567777666544222 33344445544443333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-..+++
T Consensus 86 ~D~li~ 91 (253)
T PRK08993 86 IDILVN 91 (253)
T ss_pred CCEEEE
Confidence 234443
No 127
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=54.45 E-value=2.2e+02 Score=28.76 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=31.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.++| .++|--|.+++..++.+|.+.++++.. + +.|...++.+|++.+
T Consensus 194 ~VlV-~G~G~vG~~a~~lak~~G~~~Vi~~~~-~----~~r~~~a~~~Ga~~~ 240 (371)
T cd08281 194 SVAV-VGLGGVGLSALLGAVAAGASQVVAVDL-N----EDKLALARELGATAT 240 (371)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCcEEEEcC-C----HHHHHHHHHcCCceE
Confidence 3455 557889999888899999853444322 2 224556788998644
No 128
>PRK07890 short chain dehydrogenase; Provisional
Probab=54.32 E-value=1.9e+02 Score=27.13 Aligned_cols=83 Identities=14% Similarity=0.127 Sum_probs=47.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.++|--|.++|......|.+++++.... ...+.-...++..|.++..+..+..+ .+....+++...++...
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA--ERLDEVAAEIDDLGRRALAVPTDITD-EDQCANLVALALERFGR 82 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHHhCCceEEEecCCCC-HHHHHHHHHHHHHHcCC
Confidence 4578888889999999999889999877765331 11112223344557766555543222 33344444443333333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-.+++.
T Consensus 83 ~d~vi~ 88 (258)
T PRK07890 83 VDALVN 88 (258)
T ss_pred ccEEEE
Confidence 334443
No 129
>PRK05867 short chain dehydrogenase; Provisional
Probab=54.19 E-value=1.7e+02 Score=27.57 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=43.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+..+|+.++|.-|.++|......|.+++++-.. .+..+.-...++..|.++..+..+-.+ .+...+++++..+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 83 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARH--LDALEKLADEIGTSGGKVVPVCCDVSQ-HQQVTSMLDQVTAE 83 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 456788888889999999988889987665432 221222233455667777665543222 33344455544333
No 130
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=54.13 E-value=95 Score=26.01 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 165 VGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 165 ~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
...+..+.+.+.+.+|+.+.||++++.+|.. +-..+.+++.|... .-.++.-.+|..-+.++.
T Consensus 6 ~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~--RP~~pIiavt~~~~-----~~r~l~l~~GV~p~~~~~ 68 (117)
T PF02887_consen 6 RAAVELAEDLNAKAIVVFTESGRTARLISKY--RPKVPIIAVTPNES-----VARQLSLYWGVYPVLIEE 68 (117)
T ss_dssp HHHHHHHHHHTESEEEEE-SSSHHHHHHHHT---TSSEEEEEESSHH-----HHHHGGGSTTEEEEECSS
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHHhh--CCCCeEEEEcCcHH-----HHhhhhcccceEEEEecc
Confidence 3445556667777888888999999887764 45678888877632 112223456766665554
No 131
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=54.02 E-value=2e+02 Score=27.24 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=45.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+..+|+.++|.-|.++|......|.+++++..... .........++..|.++..+..+-.+ .+...+.++...++
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~i~~~~~~~~~~ 82 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDE-EEANDVAEEIKKAGGEAIAVKGDVTV-ESDVVNLIQTAVKE 82 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHHcCCeEEEEEecCCC-HHHHHHHHHHHHHH
Confidence 35778888888999999998899998777655332 11222233456668887665543223 23333444444333
No 132
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=53.86 E-value=58 Score=30.14 Aligned_cols=63 Identities=21% Similarity=0.097 Sum_probs=43.1
Q ss_pred HHHHHHcCCCeEEEEcCCChHHHHH-HHHHHHcCCeEEEEEcCC---ChhhHHHhHHHHHhcCCEEE
Q 012341 168 ALLAKRLGKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 168 ~~~a~~~g~~~~Vv~aSsGNhg~Al-A~aa~~~Gi~~~Vv~P~~---~~~~~~~k~~~~~~~GA~V~ 230 (465)
...+++.+.+.++++.-..|+++.. |..+...|++++|+.... +.+....-+..|+..|++|+
T Consensus 130 ~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i~ 196 (196)
T cd01011 130 AEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVLV 196 (196)
T ss_pred HHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEEC
Confidence 3344567878888877777888754 444888899999888652 22334445677888888764
No 133
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=53.85 E-value=1.9e+02 Score=26.98 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=43.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~ 251 (465)
.++|+.++|.-|.++|....+.|.++++..-.. .+..+.....++..+.++..+..+-.+ .+...++++...
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~ 75 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARD-AAAAEETADAVRAAGGRACVVAGDVAN-EADVIAMFDAVQ 75 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEeccCC-HHHHHHHHHHHH
Confidence 577888888999999999888898876654322 111222334466677777766543222 233334444433
No 134
>PRK05876 short chain dehydrogenase; Provisional
Probab=53.74 E-value=1.9e+02 Score=27.94 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=46.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.++|--|.++|......|.+++++... .+..+.-...++..|.++..+..+-.+ .+.....++...++...
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~--~~~l~~~~~~l~~~~~~~~~~~~Dv~d-~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVD--KPGLRQAVNHLRAEGFDVHGVMCDVRH-REEVTHLADEAFRLLGH 83 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHHHHcCC
Confidence 357788888889999999988899986665422 111122233455668777666543223 33344444443333333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-..+++
T Consensus 84 id~li~ 89 (275)
T PRK05876 84 VDVVFS 89 (275)
T ss_pred CCEEEE
Confidence 234443
No 135
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.35 E-value=1.7e+02 Score=27.25 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=47.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.++|--|.+++......|.++++..-... .........++..|.++..+..+-.+ .+.....++++.+....
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 84 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRA-EEMNETLKMVKENGGEGIGVLADVST-REGCETLAKATIDRYGV 84 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHHcCCeeEEEEeccCC-HHHHHHHHHHHHHHcCC
Confidence 35778888888999999988889998766553222 11223344567778776655543222 33344444544433333
Q ss_pred ceEEe
Q 012341 257 THYIL 261 (465)
Q Consensus 257 ~~y~~ 261 (465)
-.+++
T Consensus 85 ~d~vi 89 (252)
T PRK06077 85 ADILV 89 (252)
T ss_pred CCEEE
Confidence 23443
No 136
>PRK08303 short chain dehydrogenase; Provisional
Probab=52.58 E-value=1.8e+02 Score=28.79 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=48.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCC--------hhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQD--------MERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIR 248 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~--------~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~ 248 (465)
+.++|+.+++--|.++|......|.+++++-.... .+........++..|.+++.+..+-.+. +.++.+++
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~-~~v~~~~~ 87 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVP-EQVRALVE 87 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCH-HHHHHHHH
Confidence 45677777778999999988889998777653311 1111222344666787776655432333 33444555
Q ss_pred HHHHccCCceEEeccC
Q 012341 249 DWVTNVETTHYILGSV 264 (465)
Q Consensus 249 ~~~~~~~~~~y~~~s~ 264 (465)
...+....-..+++..
T Consensus 88 ~~~~~~g~iDilVnnA 103 (305)
T PRK08303 88 RIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHcCCccEEEECC
Confidence 5444433333444433
No 137
>PRK07035 short chain dehydrogenase; Provisional
Probab=52.33 E-value=2e+02 Score=26.89 Aligned_cols=83 Identities=11% Similarity=0.064 Sum_probs=47.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.++|.-|.+++......|.+++++-... ...+.....+...|.++..+..+..+. +....+++...+....
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~ 85 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL--DGCQAVADAIVAAGGKAEALACHIGEM-EQIDALFAHIRERHGR 85 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEEcCCCCH-HHHHHHHHHHHHHcCC
Confidence 4578888888999999999888999877765432 111222233455676665554332233 3344444444433333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-.++++
T Consensus 86 id~li~ 91 (252)
T PRK07035 86 LDILVN 91 (252)
T ss_pred CCEEEE
Confidence 334443
No 138
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=51.62 E-value=3.1e+02 Score=28.68 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=55.1
Q ss_pred CCCCCCCccHHHHHHHHHHHHHc-----CCCeEEEEcCCChHHHH--HHHHHHHcCCeEEEEEcCCChhh----------
Q 012341 152 DLNHTGAHKINNAVGQALLAKRL-----GKTRIIAETGAGQHGVA--TATVCARFGLQCIVYMGAQDMER---------- 214 (465)
Q Consensus 152 ~~~pTGSfK~Rga~~~~~~a~~~-----g~~~~Vv~aSsGNhg~A--lA~aa~~~Gi~~~Vv~P~~~~~~---------- 214 (465)
+-+|.|-. +....++...+.+ |.+..+|+.+|+..|.| +|.+. ..|.+++++.-......
T Consensus 14 ~~hp~gc~--~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~ 90 (398)
T PRK13656 14 TAHPVGCE--ANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYN 90 (398)
T ss_pred CCCCHHHH--HHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccch
Confidence 34455532 2334455544433 34567777777777777 55566 67888777652211100
Q ss_pred HHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCC
Q 012341 215 QALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAG 266 (465)
Q Consensus 215 ~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~ 266 (465)
...-...++.+|..+..+..+- .-.+..++.++...++...-..++++...
T Consensus 91 ~~a~~~~a~~~G~~a~~i~~DV-ss~E~v~~lie~I~e~~G~IDiLVnSaA~ 141 (398)
T PRK13656 91 SAAFDKFAKAAGLYAKSINGDA-FSDEIKQKVIELIKQDLGQVDLVVYSLAS 141 (398)
T ss_pred HHHHHHHHHhcCCceEEEEcCC-CCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 0111224566787655444321 22444555555555444333445554443
No 139
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=51.36 E-value=1.2e+02 Score=30.30 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=54.9
Q ss_pred eEEEeeCCCCC-----CCCccHHHHHHHHHHHHHcCCCeEEEEcCCCh--HHHHHHHHHHHcCCeEEEEEcCCChhhHHH
Q 012341 145 HIYLKREDLNH-----TGAHKINNAVGQALLAKRLGKTRIIAETGAGQ--HGVATATVCARFGLQCIVYMGAQDMERQAL 217 (465)
Q Consensus 145 ~i~lK~E~~~p-----TGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGN--hg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~ 217 (465)
+-++|.++--| |-+.---.|+-++..-.+..+...||-- ++| -|+++-..|+.+|++.+=++.+.. ...+.
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQN-ganS~VG~~ViQlaka~GiktinvVRdR~-~ieel 201 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQN-GANSGVGQAVIQLAKALGIKTINVVRDRP-NIEEL 201 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeec-CcccHHHHHHHHHHHHhCcceEEEeecCc-cHHHH
Confidence 35567666444 2222222455566666666666667644 566 566677779999999999997742 11233
Q ss_pred hHHHHHhcCCEEEEEc
Q 012341 218 NVFRMRLLGAEVRAVH 233 (465)
Q Consensus 218 k~~~~~~~GA~V~~v~ 233 (465)
.++++.+||+.++.+
T Consensus 202 -~~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 202 -KKQLKSLGATEVITE 216 (354)
T ss_pred -HHHHHHcCCceEecH
Confidence 346889999988765
No 140
>PRK07985 oxidoreductase; Provisional
Probab=50.61 E-value=2.5e+02 Score=27.41 Aligned_cols=85 Identities=11% Similarity=0.035 Sum_probs=47.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+..+|+.++|.-|.++|......|.+++++.........+.-...++..|.++..+..+-.+ .+.....++...+....
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~g~ 128 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD-EKFARSLVHEAHKALGG 128 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC-HHHHHHHHHHHHHHhCC
Confidence 35788888889999999998889999877543322111111122344567776655433222 34444555544443333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-..+++
T Consensus 129 id~lv~ 134 (294)
T PRK07985 129 LDIMAL 134 (294)
T ss_pred CCEEEE
Confidence 233433
No 141
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=50.52 E-value=1e+02 Score=30.75 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=34.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHh-cCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~-~GA~V~~ 231 (465)
+.++|...+|.-|.+++..|+.+|.++++.... ..|...++. +|++-+.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~------~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS------DEKVDLLKNKLGFDDAF 202 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHhcCCceeE
Confidence 345666666999999999999999986555433 224555776 8986443
No 142
>PRK06114 short chain dehydrogenase; Provisional
Probab=49.89 E-value=2.3e+02 Score=26.72 Aligned_cols=74 Identities=12% Similarity=0.044 Sum_probs=44.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+..+|+.++|--|.++|......|.+++++....... .+.-...++..|.++..+..+-.+ .+...+.++...+
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~-~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~ 82 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDG-LAETAEHIEAAGRRAIQIAADVTS-KADLRAAVARTEA 82 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHHHH
Confidence 3567888888899999999888999888776432211 111233456667776665543222 3334445554433
No 143
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=49.85 E-value=1.9e+02 Score=26.08 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCh-HHHHHHHH--HHHcCCeEEEEE--cCC-ChhhHHHhHHHHHhcCCEEEEE
Q 012341 176 KTRIIAETGAGQ-HGVATATV--CARFGLQCIVYM--GAQ-DMERQALNVFRMRLLGAEVRAV 232 (465)
Q Consensus 176 ~~~~Vv~aSsGN-hg~AlA~a--a~~~Gi~~~Vv~--P~~-~~~~~~~k~~~~~~~GA~V~~v 232 (465)
...+++-++.|| -|-+++.+ .+..|++++|++ |.. ..+....+.+.++.+|.+++..
T Consensus 25 ~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 87 (169)
T PF03853_consen 25 GPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIEL 87 (169)
T ss_dssp T-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESS
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeec
Confidence 455666777886 44455554 555799998855 322 2222344667788888776543
No 144
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=49.49 E-value=2e+02 Score=25.94 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=42.6
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCC-C-hhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ-D-MERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~-~-~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
.||+.+.|..|..+|..-...|-+-+|++... . .......+..++..|++|..+..+-.+ .+...++++..
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d-~~~v~~~~~~~ 75 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTD-PEAVAAALAQL 75 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTS-HHHHHHHHHTS
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccC-HHHHHHHHHHH
Confidence 46778889999999998666665545555443 1 112344677899999999887754323 33444555443
No 145
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=49.30 E-value=21 Score=31.82 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=26.4
Q ss_pred EEcCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 012341 181 AETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (465)
Q Consensus 181 v~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~ 210 (465)
..-++||.|.|+|...+..|.+++++.++.
T Consensus 3 ~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 3 AVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 346799999999999999999999998763
No 146
>PTZ00323 NAD+ synthase; Provisional
Probab=49.29 E-value=2.3e+02 Score=28.27 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=40.7
Q ss_pred HHcCCCeEEEEcCCC-hHHHHHHHHHHHcCC-------eEEEEEcCC-ChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 172 KRLGKTRIIAETGAG-QHGVATATVCARFGL-------QCIVYMGAQ-DMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 172 ~~~g~~~~Vv~aSsG-Nhg~AlA~aa~~~Gi-------~~~Vv~P~~-~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
++.+.+.+||.-|+| +.+..++.+.+.+|. -+.+++|.. +....+.-...++.+|.+.+.++.
T Consensus 42 ~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi 113 (294)
T PTZ00323 42 RRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQ 113 (294)
T ss_pred HHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEEC
Confidence 345666788888888 677777777777764 345667853 222122233458899999888875
No 147
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=49.19 E-value=1.1e+02 Score=30.71 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEc
Q 012341 186 GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (465)
Q Consensus 186 GNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~ 233 (465)
+|.+.++..+++++|++++++-|+.... ++..+..++..|++|....
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~-~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRM-PKEILEELKAKGIKVRETE 208 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccC-CHHHHHHHHHcCCEEEEEC
Confidence 5899999999999999999999986411 1223345666799987664
No 148
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=49.03 E-value=1.1e+02 Score=29.60 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=31.6
Q ss_pred CeEEEEcCCCh-HHHHHHHH--HHHcCCeEEEEEcCCChhhH-HHhHHHHHhcCCEE
Q 012341 177 TRIIAETGAGQ-HGVATATV--CARFGLQCIVYMGAQDMERQ-ALNVFRMRLLGAEV 229 (465)
Q Consensus 177 ~~~Vv~aSsGN-hg~AlA~a--a~~~Gi~~~Vv~P~~~~~~~-~~k~~~~~~~GA~V 229 (465)
.+++|-++.|| -|-+++.| ....|+++.|++++...... ..+..+++.+|..+
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 117 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYEVTVCYPKQSSKPHYENLVTQCEDLGIPF 117 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCeEEEEEcCCCChHHHHHHHHHHHHcCCCE
Confidence 35666777885 45555544 55569999999965321111 23445567777554
No 149
>PRK07791 short chain dehydrogenase; Provisional
Probab=48.60 E-value=2.5e+02 Score=27.20 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=47.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCC-------ChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQ-------DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~-------~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~ 249 (465)
+..+|+.+++--|.++|......|.+++++.... ..+........++..|.++..+..+-.+. +.+.+.++.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~-~~v~~~~~~ 85 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADW-DGAANLVDA 85 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCH-HHHHHHHHH
Confidence 3567788888899999998888999877764221 00111222344556687776665433333 334455555
Q ss_pred HHHccCCceEEec
Q 012341 250 WVTNVETTHYILG 262 (465)
Q Consensus 250 ~~~~~~~~~y~~~ 262 (465)
..++...-..+++
T Consensus 86 ~~~~~g~id~lv~ 98 (286)
T PRK07791 86 AVETFGGLDVLVN 98 (286)
T ss_pred HHHhcCCCCEEEE
Confidence 4444333334443
No 150
>PRK07454 short chain dehydrogenase; Provisional
Probab=48.53 E-value=2.3e+02 Score=26.34 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=46.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+..+|+.++|.-|.+++......|.+++++..... ..+.-...++..+.++..+..+-.+ .+....+++...+....
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQD--ALEALAAELRSTGVKAAAYSIDLSN-PEAIAPGIAELLEQFGC 83 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhCCCcEEEEEccCCC-HHHHHHHHHHHHHHcCC
Confidence 35678888899999999999899998777664321 1111122344556666655543223 33344444444433333
Q ss_pred ceEEe
Q 012341 257 THYIL 261 (465)
Q Consensus 257 ~~y~~ 261 (465)
-..++
T Consensus 84 id~lv 88 (241)
T PRK07454 84 PDVLI 88 (241)
T ss_pred CCEEE
Confidence 33444
No 151
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=48.21 E-value=2.3e+02 Score=26.26 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=43.8
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~ 251 (465)
.++|+.++|.-|.+++......|.++++++.... +..+.....++..|.++..+..+-.+ .+....+++...
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~i~~~~~~~~ 74 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNL-HAAQEVVNLITQAGGKAFVLQADISD-ENQVVAMFTAID 74 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCh-HHHHHHHHHHHhCCCeEEEEEccCCC-HHHHHHHHHHHH
Confidence 4678888899999999998889998877554322 21222333456667776665543222 333444555443
No 152
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.10 E-value=2.4e+02 Score=26.41 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=47.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~ 257 (465)
.++|+.++|.-|.++|..-...|.+++++....... .......++..+.++..+..+-.+ .+.....++...++...-
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE-LAATQQELRALGVEVIFFPADVAD-LSAHEAMLDAAQAAWGRI 81 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH-HHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHHHhcCCC
Confidence 467888899999999999888899887765332211 122233455567777666543322 333444444443333333
Q ss_pred eEEe
Q 012341 258 HYIL 261 (465)
Q Consensus 258 ~y~~ 261 (465)
.+++
T Consensus 82 d~vi 85 (256)
T PRK12745 82 DCLV 85 (256)
T ss_pred CEEE
Confidence 3443
No 153
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.01 E-value=2.8e+02 Score=27.24 Aligned_cols=73 Identities=22% Similarity=0.165 Sum_probs=44.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~ 251 (465)
+..||+.++|.-|.++|......|.+++++-.... ...+.....++..|.+++.+..+-.+ .+.....++...
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~-~~~~~~~~~i~~~g~~~~~~~~Dv~d-~~~~~~~~~~~~ 85 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASA-LDASDVLDEIRAAGAKAVAVAGDISQ-RATADELVATAV 85 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCch-hHHHHHHHHHHhcCCeEEEEeCCCCC-HHHHHHHHHHHH
Confidence 45678888888999999998888998766532211 11222334567778888777654333 333444444433
No 154
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=47.86 E-value=3.9e+02 Score=28.88 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=36.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~ 233 (465)
..|+.-+.|.-|.+.+..|+.+|-+++++ +.. ..+.++.+.+||+.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~--D~~----~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF--DTR----PEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE--eCC----HHHHHHHHHcCCeEEEec
Confidence 34556789999999999999999853333 323 235567899999965554
No 155
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=47.71 E-value=1.9e+02 Score=27.57 Aligned_cols=75 Identities=8% Similarity=-0.074 Sum_probs=39.0
Q ss_pred eEEEEcCC--ChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 178 ~~Vv~aSs--GNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
..+|+.++ +--|.++|....+.|.++++..-.....+.+.++..++..+.++..+..+-.+ .+.+.+.++...++
T Consensus 8 ~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~v~~~~~~~~~~ 84 (258)
T PRK07370 8 KALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQD-DAQIEETFETIKQK 84 (258)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCC-HHHHHHHHHHHHHH
Confidence 45666644 46888888888889999776542111111223344455444444444433222 33444555554443
No 156
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=47.52 E-value=4.2e+02 Score=29.12 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhcCCCCCeEeccccch--------hhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEE
Q 012341 109 QEELSGILRDYVGRETPLYFAERLTE--------HYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRII 180 (465)
Q Consensus 109 ~~~l~~~i~~~vg~~TPL~~l~~Ls~--------~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~V 180 (465)
.+++-+.++..+| +.=++.++.++. +| ..++-+=.+|.|-||+.=.=+.++.+....+.=.+..|
T Consensus 252 ~defv~av~~~fG-p~~~I~~EDf~~~~af~iL~ry------r~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~ri 324 (581)
T PLN03129 252 VDEFMEAVKQRWG-PKVLVQFEDFANKNAFRLLQRY------RTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRI 324 (581)
T ss_pred HHHHHHHHHHHhC-CccEEehhhcCCccHHHHHHHh------ccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceE
Confidence 3444445555554 334777765543 23 23566678888888876555555555543322224456
Q ss_pred EEcCCChHHHHHHHHHHH
Q 012341 181 AETGAGQHGVATATVCAR 198 (465)
Q Consensus 181 v~aSsGNhg~AlA~aa~~ 198 (465)
+..++|..|.++|-....
T Consensus 325 v~~GAGsAgigia~ll~~ 342 (581)
T PLN03129 325 LFAGAGEAGTGIAELIAL 342 (581)
T ss_pred EEECCCHHHHHHHHHHHH
Confidence 778899999998876544
No 157
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=47.13 E-value=2.3e+02 Score=26.06 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=43.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.++|+.++|.-|.+++....+.|.+++++...... ........++..+.++..+..+-.+ .+...++++..
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~ 77 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEA-GAEALVAEIGALGGKALAVQGDVSD-AESVERAVDEA 77 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHH
Confidence 457888889999999999988889987666643221 1111223355567787777644322 33333444443
No 158
>PRK07806 short chain dehydrogenase; Provisional
Probab=47.06 E-value=2.4e+02 Score=26.24 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=37.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~ 235 (465)
+.++|+.++|.-|.+++......|.+++++...... ..+.-...++..|.++..+..+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~-~~~~~~~~l~~~~~~~~~~~~D 64 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAP-RANKVVAEIEAAGGRASAVGAD 64 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchH-hHHHHHHHHHhcCCceEEEEcC
Confidence 457788888999999999988889998776543221 1111122345557777666543
No 159
>PRK07677 short chain dehydrogenase; Provisional
Probab=46.79 E-value=2.3e+02 Score=26.57 Aligned_cols=82 Identities=12% Similarity=0.161 Sum_probs=45.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~ 257 (465)
..+|+.++|.-|.++|......|.+++++.... .+.+.-...++..+.++..+..+-.+ .+...+.++...++...-
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTK--EKLEEAKLEIEQFPGQVLTVQMDVRN-PEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHHhCCc
Confidence 467788888899999999888999766654321 11111122344456666655533222 334445555444333333
Q ss_pred eEEec
Q 012341 258 HYILG 262 (465)
Q Consensus 258 ~y~~~ 262 (465)
..+++
T Consensus 80 d~lI~ 84 (252)
T PRK07677 80 DALIN 84 (252)
T ss_pred cEEEE
Confidence 44444
No 160
>PRK05717 oxidoreductase; Validated
Probab=46.74 E-value=2.5e+02 Score=26.44 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=41.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+.++|+.++|.-|.++|......|.+++++-... .+ .....+.++.++..+..+-.+ .+...++++...++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~---~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 81 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ER---GSKVAKALGENAWFIAMDVAD-EAQVAAGVAEVLGQ 81 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HH---HHHHHHHcCCceEEEEccCCC-HHHHHHHHHHHHHH
Confidence 3578888899999999999888898877764321 11 111234456666655543222 23344444444443
No 161
>PRK08643 acetoin reductase; Validated
Probab=46.60 E-value=2.4e+02 Score=26.51 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=43.2
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
.++|+.++|.-|.++|......|.+++++-.... +...-...++..|.++..+..+-.+ .+...+.++...++
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 76 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEE--TAQAAADKLSKDGGKAIAVKADVSD-RDQVFAAVRQVVDT 76 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 4678888889999999998888988766653321 1111122345567777666543222 33444555544433
No 162
>PRK05693 short chain dehydrogenase; Provisional
Probab=46.13 E-value=2.2e+02 Score=27.24 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=35.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
.++|+..+|--|.++|......|.+++++.... .+...+...|.+.+.++-
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~------~~~~~~~~~~~~~~~~Dl 53 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKA------EDVEALAAAGFTAVQLDV 53 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHCCCeEEEeeC
Confidence 467888888999999999888999877765431 122334455666665553
No 163
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=45.72 E-value=1.4e+02 Score=29.32 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=33.6
Q ss_pred eEEEE-cCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEE
Q 012341 178 RIIAE-TGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (465)
Q Consensus 178 ~~Vv~-aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v 232 (465)
.+++. .++|..|.++...|+.+|.+++++.+. +.|...++.+|++.+..
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~------~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVRR------KEQVDLLKKIGAEYVLN 194 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeCC------HHHHHHHHHcCCcEEEE
Confidence 34443 678889999998999999986554432 12455577799976543
No 164
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=45.48 E-value=2.4e+02 Score=26.73 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=44.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHH-HhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRM-RLLGAEVRAVHSGTATLKDATSEAIRDWVTNVE 255 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~-~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~ 255 (465)
+.++|+.++|.-|.++|......|.+++++-... + +.+.+ ..+|.++..+..+-.+ .+...+++++..++..
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~----~~~~l~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g 78 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA--A----GLQELEAAHGDAVVGVEGDVRS-LDDHKEAVARCVAAFG 78 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--H----HHHHHHhhcCCceEEEEeccCC-HHHHHHHHHHHHHHhC
Confidence 4577888888999999999889999877664221 1 11222 2346566555433222 3334444554444333
Q ss_pred CceEEec
Q 012341 256 TTHYILG 262 (465)
Q Consensus 256 ~~~y~~~ 262 (465)
.-.++++
T Consensus 79 ~id~li~ 85 (262)
T TIGR03325 79 KIDCLIP 85 (262)
T ss_pred CCCEEEE
Confidence 3334443
No 165
>PRK08265 short chain dehydrogenase; Provisional
Probab=45.45 E-value=2.6e+02 Score=26.53 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=41.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+.++|+.++|--|.++|......|.+++++-... +.. ....+.+|.++..+..+-.+ .+...+.++...++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~---~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 77 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNG---AAVAASLGERARFIATDITD-DAAIERAVATVVAR 77 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHH---HHHHHHhCCeeEEEEecCCC-HHHHHHHHHHHHHH
Confidence 4577888888899999999888999877664321 111 11233447666655543222 33344444544333
No 166
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.30 E-value=2.5e+02 Score=25.85 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=38.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~ 235 (465)
++++|+.++|.-|.+++......|.+++++....... .+.-...+...+.++..+..+
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D 64 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEA-AEELVEAVEALGRRAQAVQAD 64 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHHHhcCCceEEEECC
Confidence 3578889999999999999888999987766553321 111122344556666666543
No 167
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=45.14 E-value=51 Score=30.69 Aligned_cols=34 Identities=15% Similarity=0.016 Sum_probs=24.7
Q ss_pred ccchHHHHHHHHHHhcc-cCCCCCEEEEEeCCCCC
Q 012341 420 PALETAHALAYLEKLCP-TLADGTKVVVNFSGRGD 453 (465)
Q Consensus 420 ~~p~sa~alAa~~~l~~-~~~~~~~VVvv~tG~g~ 453 (465)
.+..|+-|+.-+.+..+ +.+...+||+++|++.|
T Consensus 89 ag~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n 123 (191)
T cd01455 89 SGDHTVEATEFAIKELAAKEDFDEAIVIVLSDANL 123 (191)
T ss_pred cCccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCc
Confidence 56788878777766654 55567889999998543
No 168
>PRK06181 short chain dehydrogenase; Provisional
Probab=45.13 E-value=2.7e+02 Score=26.23 Aligned_cols=81 Identities=20% Similarity=0.157 Sum_probs=46.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~ 257 (465)
.++|+.++|.-|.+++......|.+++++..... ..+.....++..|.++..+..+..+ .+....+++...++...-
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~--~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNET--RLASLAQELADHGGEALVVPTDVSD-AEACERLIEAAVARFGGI 79 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHHcCCC
Confidence 4678888899999999998889998777764321 1111223355567777665543222 333444444443333333
Q ss_pred eEEe
Q 012341 258 HYIL 261 (465)
Q Consensus 258 ~y~~ 261 (465)
.+++
T Consensus 80 d~vi 83 (263)
T PRK06181 80 DILV 83 (263)
T ss_pred CEEE
Confidence 3444
No 169
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=45.00 E-value=2.7e+02 Score=26.20 Aligned_cols=73 Identities=11% Similarity=0.144 Sum_probs=43.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+.++|+.++|.-|.++|......|.+++++... .++.+.-...++..|.++..+..+-.+ .+..+..++.+.+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~--~~~~~~~~~~i~~~~~~~~~~~~Dl~d-~~~i~~~~~~~~~ 85 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARK--AEELEEAAAHLEALGIDALWIAADVAD-EADIERLAEETLE 85 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence 457888888899999999888889987655432 121122223355667777666544222 3334444444333
No 170
>PRK07832 short chain dehydrogenase; Provisional
Probab=44.96 E-value=1.8e+02 Score=27.80 Aligned_cols=50 Identities=28% Similarity=0.211 Sum_probs=32.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V 229 (465)
.++|+.++|.-|.++|......|.+++++-... +..+.....++..|+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~--~~~~~~~~~~~~~~~~~ 51 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDA--DGLAQTVADARALGGTV 51 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCCc
Confidence 367888888999999999888999876654332 11122233455566653
No 171
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=44.88 E-value=2.4e+02 Score=26.19 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=43.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+.++|+.++|.-|.++|......|.+++++..... ..+.-...++..+.++..+..+..+ .+.....++.+.++
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNRE--AAEKVAADIRAKGGNAQAFACDITD-RDSVDTAVAAAEQA 77 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH--HHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 34678888999999999998888998777654321 1111122345556666666544222 33344455544443
No 172
>PRK06172 short chain dehydrogenase; Provisional
Probab=44.74 E-value=2.7e+02 Score=26.07 Aligned_cols=71 Identities=21% Similarity=0.153 Sum_probs=43.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.++|+..+|.-|.++|......|.+++++..... ..+.....++..|.++..+..+-.+ .+.....++..
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~ 78 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAA--GGEETVALIREAGGEALFVACDVTR-DAEVKALVEQT 78 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHH
Confidence 45778888899999999998888998776653321 1122233456677777665543222 33344444443
No 173
>PRK08628 short chain dehydrogenase; Provisional
Probab=44.30 E-value=2.5e+02 Score=26.33 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=44.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+.++|+.++|--|.++|..-...|.+++++...... . .-...++..|.++..+..+..+ .+.....++...+
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~--~-~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 79 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPD--D-EFAEELRALQPRAEFVQVDLTD-DAQCRDAVEQTVA 79 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhh--H-HHHHHHHhcCCceEEEEccCCC-HHHHHHHHHHHHH
Confidence 356788888899999999988899988776543221 1 1223456668777666544322 3334444444433
No 174
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=44.25 E-value=1.2e+02 Score=28.85 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=34.4
Q ss_pred CCeEEEEcCCC---hHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCC
Q 012341 176 KTRIIAETGAG---QHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA 227 (465)
Q Consensus 176 ~~~~Vv~aSsG---Nhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA 227 (465)
.+.+|.+.|.| -+..|||.||++-|=+.+.++|+... +......|..+|.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~--~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQS--LSEYKKALGEAGL 94 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhh--HHHHHHHHhhccc
Confidence 44445444555 37999999999999999999998421 2233445766675
No 175
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=44.20 E-value=1.3e+02 Score=30.22 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=33.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHH-hcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~-~~GA~V~~ 231 (465)
+.++|...+|--|.++...|+.+|.+++++... ..|...++ .+|++.+.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~------~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS------SQKVDLLKNKLGFDEAF 209 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC------HHHHHHHHHhcCCCEEE
Confidence 345565656899999999999999985554322 22455565 69997544
No 176
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=44.13 E-value=78 Score=32.07 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=31.4
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.|+..++|.-|.+++..++.+|...++++... ..+...++.+|++.+.
T Consensus 190 ~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~-----~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 190 TVAIFGLGAVGLAVAEGARIRGASRIIGVDLN-----PSKFEQAKKFGVTEFV 237 (369)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEE
Confidence 34444679999999999999998433333221 1245567889986443
No 177
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=43.83 E-value=2.8e+02 Score=26.01 Aligned_cols=74 Identities=24% Similarity=0.254 Sum_probs=43.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+..+|+.++|.-|.++|....+.|.+++++--. ....+.-...++..|.++..+..+-.+ .+.....++...++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~--~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 83 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDIT--AERAELAVAKLRQEGIKAHAAPFNVTH-KQEVEAAIEHIEKD 83 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC--HHHHHHHHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHHHh
Confidence 457888888999999999988889877665422 221122223455557676665543222 33344444444333
No 178
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=43.68 E-value=97 Score=30.04 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=32.9
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.|+..++|.-|..++..++.+|.+.++++ +.+ +.|.+..+.+|++.+.
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~~----~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAA-DPS----PDRRELALSFGATALA 170 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEE-CCC----HHHHHHHHHcCCcEec
Confidence 34445678999999999999999845554 322 2355668889986543
No 179
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=43.52 E-value=2.7e+02 Score=25.82 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=27.5
Q ss_pred CeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHH
Q 012341 144 PHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATV 195 (465)
Q Consensus 144 ~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~a 195 (465)
.++|...|..+.| | +-.....+...+..++..+..-++|.-+.++-++
T Consensus 6 D~~F~~~~~~p~T---K-~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a 53 (187)
T COG2242 6 DELFERDEGGPMT---K-EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA 53 (187)
T ss_pred chhhccCCCCCCc---H-HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH
Confidence 3566666666555 3 2222233333344556678787788777776666
No 180
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=43.45 E-value=2.4e+02 Score=26.60 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=25.2
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+++|+.++|.-|.++|......|.+++++-.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 3678888889999999998889998766543
No 181
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=43.42 E-value=2.6e+02 Score=26.22 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=25.2
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYM 207 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~ 207 (465)
.++|+.++|..|.++|......|.+++++-
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~ 31 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATG 31 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 367788899999999999888999876664
No 182
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.22 E-value=2.7e+02 Score=25.74 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=42.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.++|+.++|..|.+++......|.+++++..... ....-...++..|.+++.+..+..+ .+....+++..
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~ 78 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEE--NLKAVAEEVEAYGVKVVIATADVSD-YEEVTAAIEQL 78 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCeEEEEECCCCC-HHHHHHHHHHH
Confidence 45778888889999999988888998777654321 1111122345567777766544223 33344444443
No 183
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=43.07 E-value=1.1e+02 Score=25.51 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 189 g~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
|..++..|+.+|.+++++-+. +.|.+.++.+||+.+....
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~------~~k~~~~~~~Ga~~~~~~~ 42 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRS------EEKLELAKELGADHVIDYS 42 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESS------HHHHHHHHHTTESEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEECC------HHHHHHHHhhccccccccc
Confidence 666777789999555554433 2356678899988776553
No 184
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.03 E-value=2.7e+02 Score=25.67 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=42.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+.++|+.++|.-|..+|......|.++++++.... +........+...+.++..+..+-.+ .+.....++.+.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 79 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE-EAAQELLEEIKEEGGDAIAVKADVSS-EEDVENLVEQIVE 79 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHH
Confidence 35788888999999999987788998777633321 11111122234456677666543222 2333344444333
No 185
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=42.88 E-value=3e+02 Score=26.13 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.8
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYM 207 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~ 207 (465)
..+|+..+|.-|.++|......|.++++..
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~~V~~~~ 32 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGYRVVLHY 32 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCCeEEEEc
Confidence 467788888899999998888888876654
No 186
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=42.69 E-value=85 Score=31.35 Aligned_cols=47 Identities=23% Similarity=0.103 Sum_probs=32.3
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.|+..+.|--|.+++..|+.+|.+++++... +.|.+.++.+||+.+.
T Consensus 168 ~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~------~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 168 RLGLYGFGGSAHLTAQVALAQGATVHVMTRG------AAARRLALALGAASAG 214 (329)
T ss_pred EEEEEcCCHHHHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHhCCceec
Confidence 3444556888988888899999975544332 2256678999997543
No 187
>PRK07062 short chain dehydrogenase; Provisional
Probab=41.86 E-value=2.9e+02 Score=26.11 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
+.++|+.+++.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 357788888889999999988899987776543
No 188
>PRK05993 short chain dehydrogenase; Provisional
Probab=41.64 E-value=3.1e+02 Score=26.27 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=35.5
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
.++|+.++|.-|.++|......|.+++++.... .+...+...|.+++.++.
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~------~~~~~l~~~~~~~~~~Dl 56 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRKE------EDVAALEAEGLEAFQLDY 56 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH------HHHHHHHHCCceEEEccC
Confidence 467888889999999999888899877765431 123334555767666553
No 189
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=41.62 E-value=1e+02 Score=30.68 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=30.9
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V 229 (465)
.++|. ++|..|.+++..|+.+|.+++++.+.. .+...++.+|++-
T Consensus 166 ~vlV~-g~g~iG~~~~~~a~~~G~~vi~~~~~~------~~~~~~~~~g~~~ 210 (333)
T cd08296 166 LVAVQ-GIGGLGHLAVQYAAKMGFRTVAISRGS------DKADLARKLGAHH 210 (333)
T ss_pred EEEEE-CCcHHHHHHHHHHHHCCCeEEEEeCCh------HHHHHHHHcCCcE
Confidence 34444 489999999999999999865554321 2344567788754
No 190
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=41.46 E-value=2e+02 Score=25.32 Aligned_cols=61 Identities=25% Similarity=0.227 Sum_probs=42.2
Q ss_pred HHHcCCCeEEEEcCCChHHHH-HHHHHHHcCCeEEEEEcCC---ChhhHHHhHHHHHhcCCEEEE
Q 012341 171 AKRLGKTRIIAETGAGQHGVA-TATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~A-lA~aa~~~Gi~~~Vv~P~~---~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+++.|.+.+|++.-..|.++. +|.-+...|++++++-... +++..+.-+..|+..|++|+.
T Consensus 83 L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as~~~~~h~~al~~~~~~~~~v~~ 147 (157)
T cd01012 83 LKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGSRSKEDHELALARMRQAGAVLTT 147 (157)
T ss_pred HHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCCCCHHHHHHHHHHHHHCCCEEee
Confidence 445677888887777777764 4444888999999988652 223234456778889998853
No 191
>PRK06123 short chain dehydrogenase; Provisional
Probab=41.28 E-value=3e+02 Score=25.58 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=45.5
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETT 257 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~ 257 (465)
..+|+.++|.-|.++|..-.+.|..+++.... .....+.....++..|.+++.+..+-.+ .+...++++...++...-
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLR-NRDAAEAVVQAIRRQGGEALAVAADVAD-EADVLRLFEAVDRELGRL 81 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCC-CHHHHHHHHHHHHhCCCcEEEEEeccCC-HHHHHHHHHHHHHHhCCC
Confidence 46778888889999998877788775544322 2222222233456667776655543222 334445555444333333
Q ss_pred eEEec
Q 012341 258 HYILG 262 (465)
Q Consensus 258 ~y~~~ 262 (465)
..++.
T Consensus 82 d~li~ 86 (248)
T PRK06123 82 DALVN 86 (248)
T ss_pred CEEEE
Confidence 34443
No 192
>PRK05854 short chain dehydrogenase; Provisional
Probab=41.20 E-value=2.9e+02 Score=27.32 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=43.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhc--CCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL--GAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~--GA~V~~v~~~~~~~~da~~~a~~~~~~~~ 254 (465)
+..||+.+++--|.++|..-.+.|.+++++.... ++.+.....++.. +.++..+..+-.+.+ .+.++.++..+..
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~--~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~-sv~~~~~~~~~~~ 91 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR--AKGEAAVAAIRTAVPDAKLSLRALDLSSLA-SVAALGEQLRAEG 91 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHhCCCCceEEEEecCCCHH-HHHHHHHHHHHhC
Confidence 3567777777888888888888898877665432 1111112223222 445555443323333 3444555544443
Q ss_pred CCceEEec
Q 012341 255 ETTHYILG 262 (465)
Q Consensus 255 ~~~~y~~~ 262 (465)
..-.++++
T Consensus 92 ~~iD~li~ 99 (313)
T PRK05854 92 RPIHLLIN 99 (313)
T ss_pred CCccEEEE
Confidence 33334443
No 193
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.17 E-value=3e+02 Score=25.54 Aligned_cols=71 Identities=23% Similarity=0.205 Sum_probs=42.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+..+|+.++|--|.++|......|.+++++.... .+.+.....++..|+++..+..+-.+ .+...+.++..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~ 76 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ--EKLEEAVAECGALGTEVRGYAANVTD-EEDVEATFAQI 76 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEcCCCC-HHHHHHHHHHH
Confidence 3467778789999999999888898876654432 21122233456668887666543222 23344444443
No 194
>PRK06949 short chain dehydrogenase; Provisional
Probab=40.78 E-value=3.1e+02 Score=25.65 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=27.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
+.++|+.++|.-|.++|......|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457888888999999999988899987766543
No 195
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=40.28 E-value=2e+02 Score=28.43 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=33.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCC-eEEEEEcCCChhhHHHhHHHHHh-cCCEEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGL-QCIVYMGAQDMERQALNVFRMRL-LGAEVRAV 232 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi-~~~Vv~P~~~~~~~~~k~~~~~~-~GA~V~~v 232 (465)
+.++|...+|-.|.++...|+.+|. +++++... +.|...++. +|++-+..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s------~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS------DEKCQLLKSELGFDAAIN 207 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC------HHHHHHHHHhcCCcEEEE
Confidence 4556666668999999989999998 56555433 124444554 89975543
No 196
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=40.05 E-value=3.3e+02 Score=25.73 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=25.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYM 207 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~ 207 (465)
+.++|+.++|.-|.++|......|.+++++-
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLE 37 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4577888888899999999888999876654
No 197
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=39.96 E-value=1.1e+02 Score=31.04 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=29.5
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.|+..++|.-|.+++..|+.+|.+++++..... .+....+.+|++.+
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~-----~~~~~~~~~Ga~~v 232 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSN-----KEDEAINRLGADSF 232 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc-----hhhhHHHhCCCcEE
Confidence 344466788888888889999987555433321 12234567888544
No 198
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=39.82 E-value=62 Score=27.04 Aligned_cols=40 Identities=33% Similarity=0.447 Sum_probs=24.1
Q ss_pred HHHHHhCC-CCCEEEEcCCCchhHHHHhHHhhcCCCcEEEEEe
Q 012341 288 QALEKWGG-KPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVE 329 (465)
Q Consensus 288 qi~e~~g~-~~D~vvvpvG~GG~~aGi~~~~~~~p~~rvigVe 329 (465)
++.+..++ .+|++|-++|++..+.-....+ .+.-+++-+-
T Consensus 49 ~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l--~~~G~~v~vg 89 (130)
T PF00107_consen 49 QIRELTGGRGVDVVIDCVGSGDTLQEAIKLL--RPGGRIVVVG 89 (130)
T ss_dssp HHHHHTTTSSEEEEEESSSSHHHHHHHHHHE--EEEEEEEEES
T ss_pred ccccccccccceEEEEecCcHHHHHHHHHHh--ccCCEEEEEE
Confidence 34444443 6999999999877665544443 3444554444
No 199
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=38.79 E-value=3.1e+02 Score=25.12 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=40.7
Q ss_pred EEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHH
Q 012341 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (465)
Q Consensus 180 Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~ 249 (465)
+|+.++|-.|..+|......|.+++++..... ...+.....++..|+++..+..+-.+ .+..++.++.
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~ 69 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSE-EGAEEVVEELKAYGVKALGVVCDVSD-REDVKAVVEE 69 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCch-hHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHH
Confidence 56788889999999998888998766654321 11122233466678777666543222 3334444443
No 200
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=38.78 E-value=3.2e+02 Score=25.26 Aligned_cols=72 Identities=22% Similarity=0.121 Sum_probs=43.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~ 251 (465)
+.++|+.++|.-|.+++......|.+++++..... ........++..+.++..+..+-.+ .+.....++...
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~ 78 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD--DAAATAELVEAAGGKARARQVDVRD-RAALKAAVAAGV 78 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHH
Confidence 35778888999999999998888988777654321 1122233456667777666543222 333444444433
No 201
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=38.70 E-value=1.4e+02 Score=26.43 Aligned_cols=62 Identities=26% Similarity=0.186 Sum_probs=42.2
Q ss_pred HHHHcCCCeEEEEcCCChHHHH-HHHHHHHcCCeEEEEEcC---CChhhHHHhHHHHHhcCCEEEE
Q 012341 170 LAKRLGKTRIIAETGAGQHGVA-TATVCARFGLQCIVYMGA---QDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~A-lA~aa~~~Gi~~~Vv~P~---~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.+++.|.+.+|++.-..+.++. .|..+..+|++++|+-.. .+++..+.-+..|+..|++|+.
T Consensus 106 ~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~~~~~~h~~~l~~l~~~~~~v~t 171 (174)
T PF00857_consen 106 ILRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDACASYSPEAHEAALEELRKRGAEVIT 171 (174)
T ss_dssp HHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEEEBSSHHHHHHHHHHHHHHTSEEE-
T ss_pred cccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhhcCCCHHHHHHHHHHHHhCCCEEEe
Confidence 3445777788887777777664 444588899999998854 2334445567778888999874
No 202
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=38.67 E-value=2.1e+02 Score=28.51 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=35.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+.++| .++|..|.+++..|+.+|...++.+... +.|...++.+|++.+.
T Consensus 176 ~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 176 DVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDLK-----DERLALARKFGADVVL 224 (350)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcCC-----HHHHHHHHHcCCcEEe
Confidence 33444 7779999999999999998876665442 2244567889986553
No 203
>PRK08251 short chain dehydrogenase; Provisional
Probab=38.45 E-value=3.3e+02 Score=25.31 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=41.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhc--CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL--GAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~--GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
.++|+.++|.-|.++|....+.|.+++++.... .+.+.-...+... |.++..+..+..+ .+.....++....+
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~ 78 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRT--DRLEELKAELLARYPGIKVAVAALDVND-HDQVFEVFAEFRDE 78 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 467888899999999999888898766665332 1111111122222 6677666544333 33344455544433
No 204
>PRK08278 short chain dehydrogenase; Provisional
Probab=38.35 E-value=3.6e+02 Score=25.77 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=44.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhh-----HHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMER-----QALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWV 251 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~-----~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~ 251 (465)
+..+|+.++|--|.++|......|.+++++........ ...-...++..|.+++.+..+-.+ .+.....++...
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~-~~~i~~~~~~~~ 85 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRD-EDQVAAAVAKAV 85 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCC-HHHHHHHHHHHH
Confidence 35678888888999999998889999888775422100 011123456678777666543222 333444444433
Q ss_pred H
Q 012341 252 T 252 (465)
Q Consensus 252 ~ 252 (465)
+
T Consensus 86 ~ 86 (273)
T PRK08278 86 E 86 (273)
T ss_pred H
Confidence 3
No 205
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=38.28 E-value=3.7e+02 Score=26.38 Aligned_cols=59 Identities=20% Similarity=0.163 Sum_probs=40.5
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCC
Q 012341 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (465)
Q Consensus 176 ~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~ 235 (465)
....|||..|+.-|.++|..-++.|.+++++-...+.- .+...+.-+.+|.+|...+.+
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL-~~la~~l~~~~~v~v~vi~~D 64 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKL-EALAKELEDKTGVEVEVIPAD 64 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHH-HHHHHHHHHhhCceEEEEECc
Confidence 34578888899999999999999999999998763211 122222333456776666544
No 206
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=38.23 E-value=3.3e+02 Score=25.27 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=44.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+..+|+.++|--|.++|......|.+++++..... ...+.-...++..|.++..+..+..+ .+...++++...+
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 80 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK-EAAENLVNELGKEGHDVYAVQADVSK-VEDANRLVEEAVN 80 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH-HHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHHHHH
Confidence 45778888889999999988888988776543221 11112223456678888777654322 3334444444433
No 207
>PRK09135 pteridine reductase; Provisional
Probab=38.11 E-value=3.3e+02 Score=25.16 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=27.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
+.++|+.++|.-|..++..-...|.+++++...
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 357888889999999999988889998888754
No 208
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=38.07 E-value=2.6e+02 Score=28.08 Aligned_cols=56 Identities=5% Similarity=0.013 Sum_probs=37.9
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhH---HHhHHHHHhcCCEEEEEc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQ---ALNVFRMRLLGAEVRAVH 233 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~---~~k~~~~~~~GA~V~~v~ 233 (465)
+++.+.-+.|-+.++-.+|+++|++++|..|++....+ ..-....+..|++|..+.
T Consensus 155 k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~ 213 (310)
T COG0078 155 KLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTE 213 (310)
T ss_pred EEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEec
Confidence 34444444579999999999999999999999632211 111112344599998875
No 209
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=37.88 E-value=3.3e+02 Score=25.14 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=42.4
Q ss_pred EEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 180 Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+|+.++|.-|.++|......|.+++++..... +..+.....++..+.++..+..+-.+. +.....++...+
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~Dl~~~-~~~~~~~~~~~~ 72 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGR-SDAESVVSAIQAQGGNARLLQFDVADR-VACRTLLEADIA 72 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHHcCCeEEEEEccCCCH-HHHHHHHHHHHH
Confidence 56788888999999998889999776654322 111222334556677777666443332 333444444333
No 210
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.57 E-value=3.1e+02 Score=24.71 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCC
Q 012341 188 HGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP 267 (465)
Q Consensus 188 hg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~ 267 (465)
-|..+.++++.+|.++.--++..+. -..-+..+...|-.|.++++. .+..+++.+.+.+...+ .-+.+..
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl--~~~l~~~~~~~~~~ifllG~~----~~~~~~~~~~l~~~yP~-l~ivg~~--- 81 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDL--FPDLLRRAEQRGKRIFLLGGS----EEVLEKAAANLRRRYPG-LRIVGYH--- 81 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHH--HHHHHHHHHHcCCeEEEEeCC----HHHHHHHHHHHHHHCCC-eEEEEec---
Confidence 3577888999999888433332221 122334466678899999754 23333444444443332 2222222
Q ss_pred CCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchh
Q 012341 268 HPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSN 309 (465)
Q Consensus 268 ~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~ 309 (465)
+||- ..... .++..+|.+ ..||.|+|+.|+---
T Consensus 82 ~g~f---~~~~~---~~i~~~I~~---~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 82 HGYF---DEEEE---EAIINRINA---SGPDIVFVGLGAPKQ 114 (172)
T ss_pred CCCC---ChhhH---HHHHHHHHH---cCCCEEEEECCCCHH
Confidence 3321 01111 333444432 358999999988643
No 211
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=37.46 E-value=2.2e+02 Score=29.39 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=34.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
+.++| .++|--|.+++..++.+|.+.+++. +.. +.+....+.+|++.+
T Consensus 187 ~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~-d~~----~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 187 STVYI-AGAGPVGLAAAASAQLLGAAVVIVG-DLN----PARLAQARSFGCETV 234 (393)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCceEEEe-CCC----HHHHHHHHHcCCeEE
Confidence 33444 6789999999999999999876643 222 235666888999853
No 212
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=37.44 E-value=2.2e+02 Score=26.67 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=43.1
Q ss_pred HHHHcCCCeEEEEcCCChHHHHHH-HHHHHcCCeEEEEEcCC---ChhhHHHhHHHHHhcCCEEEE
Q 012341 170 LAKRLGKTRIIAETGAGQHGVATA-TVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 170 ~a~~~g~~~~Vv~aSsGNhg~AlA-~aa~~~Gi~~~Vv~P~~---~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.+++.+.+.++++.-..|+++.-. .-+...|++++|+-... +.+..+.-+..|+..|++|+.
T Consensus 140 ~L~~~gi~~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~ 205 (212)
T PTZ00331 140 ILKAHGVRRVFICGLAFDFCVLFTALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILLT 205 (212)
T ss_pred HHHHCCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 345568888888887888887544 44888999998887542 222234456778889988863
No 213
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=37.35 E-value=1.9e+02 Score=31.50 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=32.9
Q ss_pred CeEEEEcCCCh-HHHHHHHH--HHHcCCeEEEEEcCCChhh-HHHhHHHHHhcCCEE
Q 012341 177 TRIIAETGAGQ-HGVATATV--CARFGLQCIVYMGAQDMER-QALNVFRMRLLGAEV 229 (465)
Q Consensus 177 ~~~Vv~aSsGN-hg~AlA~a--a~~~Gi~~~Vv~P~~~~~~-~~~k~~~~~~~GA~V 229 (465)
.+++|.++.|| -|=+++.| ....|.+++|++|...... ......+++.+|..+
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 35677788885 45555544 5557999999998742111 122455677777664
No 214
>PRK06197 short chain dehydrogenase; Provisional
Probab=37.31 E-value=3.5e+02 Score=26.40 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=26.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
+.++|+.++|--|.++|..-...|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 457788888889999998888889987776643
No 215
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=37.03 E-value=1.1e+02 Score=31.10 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=31.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.++| .++|.-|.+++..|+.+|.+-++.+.. + +.|...++.+|++.+.
T Consensus 188 ~VlV-~G~G~iG~~a~q~Ak~~G~~~Vi~~~~-~----~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 188 TVAV-FGLGGIGLSVIQGARMAKASRIIAIDI-N----PAKFELAKKLGATDCV 235 (368)
T ss_pred EEEE-ECCCHHHHHHHHHHHHcCCCeEEEEcC-C----HHHHHHHHHhCCCeEE
Confidence 3444 467999999998999999843333322 2 2245567888986433
No 216
>PRK06483 dihydromonapterin reductase; Provisional
Probab=36.83 E-value=3.4e+02 Score=25.04 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=42.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
.++|+.++|--|.++|......|.+++++-..... ....++..|++.+.++.. + .+.....++...+
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~~~~~~~~~~D~~--~-~~~~~~~~~~~~~ 70 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYP-----AIDGLRQAGAQCIQADFS--T-NAGIMAFIDELKQ 70 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchh-----HHHHHHHcCCEEEEcCCC--C-HHHHHHHHHHHHh
Confidence 46788888899999999988889988776543221 123355567776666542 2 3334444444433
No 217
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=36.78 E-value=1.1e+02 Score=30.65 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=34.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.++|. ++|.-|..++..++..|.+++++-.... .+.|.+.++.+|++.+
T Consensus 175 ~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~---~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 175 RALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDP---PDPKADIVEELGATYV 223 (355)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCC---CHHHHHHHHHcCCEEe
Confidence 34444 6799999999999999998666554321 1235566889999863
No 218
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=36.77 E-value=1.3e+02 Score=30.10 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=30.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCC-eEEEEEcCCChhhHHHhHHHHHhcCCEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGL-QCIVYMGAQDMERQALNVFRMRLLGAEV 229 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi-~~~Vv~P~~~~~~~~~k~~~~~~~GA~V 229 (465)
..++|. ++|..|.+++..|+.+|. +++++.+ . +.+...++.+|++-
T Consensus 179 ~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~~--~----~~~~~~~~~~g~~~ 225 (361)
T cd08231 179 DTVVVQ-GAGPLGLYAVAAAKLAGARRVIVIDG--S----PERLELAREFGADA 225 (361)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--C----HHHHHHHHHcCCCe
Confidence 345555 579999999999999999 5544432 2 12344567788753
No 219
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=36.69 E-value=1.2e+02 Score=30.69 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=31.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+.++|. ++|.-|.+++..++.+|.+.++.+... +.|...++.+|++.+.
T Consensus 188 ~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~~-----~~~~~~~~~lGa~~~i 236 (368)
T cd08300 188 STVAVF-GLGAVGLAVIQGAKAAGASRIIGIDIN-----PDKFELAKKFGATDCV 236 (368)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCCEEE
Confidence 334444 679999999999999998534443221 2245557889986543
No 220
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=36.69 E-value=1.3e+02 Score=29.98 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=33.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+.++| .++|--|.++...++.+|.+.++++-.. +.|.+..+.+||+.+.
T Consensus 171 ~~VlV-~G~G~vG~~aiqlak~~G~~~Vi~~~~~-----~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 171 KRVFV-SGVGPIGCLIVAAVKTLGAAEIVCADVS-----PRSLSLAREMGADKLV 219 (343)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEeCC-----HHHHHHHHHcCCcEEe
Confidence 34454 4579999999989999998644444321 2355668889997654
No 221
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=36.32 E-value=3.7e+02 Score=25.23 Aligned_cols=75 Identities=16% Similarity=0.073 Sum_probs=43.7
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 176 ~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
.+.++|+.++|.-|.+++......|.+++++..... ..+.-...++..|.++..+..+-.+ .+...++++...+.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D~~~-~~~i~~~~~~~~~~ 85 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD--AANHVVDEIQQLGGQAFACRCDITS-EQELSALADFALSK 85 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHHH
Confidence 355778888888999999988888998777654321 1111122345567776655543223 33344444444433
No 222
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.92 E-value=3.8e+02 Score=25.27 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=46.2
Q ss_pred CeEEEEcCCC--hHHHHHHHHHHHcCCeEEEEEcC----C-----ChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHH
Q 012341 177 TRIIAETGAG--QHGVATATVCARFGLQCIVYMGA----Q-----DMERQALNVFRMRLLGAEVRAVHSGTATLKDATSE 245 (465)
Q Consensus 177 ~~~Vv~aSsG--Nhg~AlA~aa~~~Gi~~~Vv~P~----~-----~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~ 245 (465)
+.++|+.++| .-|.++|......|.++++.... . ...........++..|.++..+..+-.+ .+....
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~-~~~i~~ 85 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQ-NDAPKE 85 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHH
Confidence 3466666653 78899999988899987775311 0 1111112234466778888776644323 334445
Q ss_pred HHHHHHHccCCceEEe
Q 012341 246 AIRDWVTNVETTHYIL 261 (465)
Q Consensus 246 a~~~~~~~~~~~~y~~ 261 (465)
++..+.+....-..++
T Consensus 86 ~~~~~~~~~g~id~li 101 (256)
T PRK12859 86 LLNKVTEQLGYPHILV 101 (256)
T ss_pred HHHHHHHHcCCCcEEE
Confidence 5555444333323344
No 223
>PRK06701 short chain dehydrogenase; Provisional
Probab=35.91 E-value=4.2e+02 Score=25.75 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=44.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+.++|+..+|.-|.++|....+.|.+++++....... .......++..|.++..+..+-.+ .+...+.+++..+
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~i~~ 120 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHED-ANETKQRVEKEGVKCLLIPGDVSD-EAFCKDAVEETVR 120 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchH-HHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHHHH
Confidence 3477888888999999999888899987765442211 122234456678777666543222 3334444444333
No 224
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=35.90 E-value=3.7e+02 Score=25.18 Aligned_cols=32 Identities=16% Similarity=0.028 Sum_probs=26.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+.++|+.++|--|.++|......|.+++++-.
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r 38 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADI 38 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcC
Confidence 45788888899999999998888998777644
No 225
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=35.83 E-value=3.5e+02 Score=24.82 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=37.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
++++|+..+|.-|..++......|.+++++..... ..+.-...++..|.++..+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 61 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE--AAEALAAELRAAGGEARVLVF 61 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh--HHHHHHHHHHhcCCceEEEEc
Confidence 35788888999999999998888999655554322 112223345567877777654
No 226
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=35.71 E-value=3.5e+02 Score=24.85 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=42.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
..+|+..+|.-|..+|......|.+++++.-... ...+.-...+...+.++..+..+..+ .+....+++.+.+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 74 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNE-ERAEAWLQEQGALGFDFRVVEGDVSS-FESCKAAVAKVEA 74 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhhCCceEEEEecCCC-HHHHHHHHHHHHH
Confidence 3577888899999999998889998777654222 11111122344456666665543222 3334444444433
No 227
>PRK09134 short chain dehydrogenase; Provisional
Probab=35.68 E-value=3.8e+02 Score=25.19 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=42.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.++|+..+|.-|.+++....+.|.+++++.-... ...+.-...++..|.++..+..+-.+ .+...++++..
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~ 81 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSR-DEAEALAAEIRALGRRAVALQADLAD-EAEVRALVARA 81 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH-HHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHH
Confidence 35788888899999999999999998877654321 11111122344557777666543222 23344444443
No 228
>PLN02740 Alcohol dehydrogenase-like
Probab=35.57 E-value=1.2e+02 Score=30.95 Aligned_cols=46 Identities=20% Similarity=0.052 Sum_probs=30.8
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCe-EEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~-~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.|+..++|.-|.+++..|+.+|.+ ++++-.. +.|.+.++.+|++.+
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~------~~r~~~a~~~Ga~~~ 247 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARGASKIIGVDIN------PEKFEKGKEMGITDF 247 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC------hHHHHHHHHcCCcEE
Confidence 344446799999999999999985 4443222 225556788898653
No 229
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=35.55 E-value=2.3e+02 Score=28.52 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=35.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v 232 (465)
+.++|.+.+|.-|..+...|+.+|..+++.... + .|...++.+||+.+..
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s-~-----~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS-S-----EKLELLKELGADHVIN 193 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHcCCcEEEEecC-H-----HHHHHHHhcCCCEEEc
Confidence 456777889999999888999999844444322 1 2444799999976654
No 230
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=35.49 E-value=4.8e+02 Score=26.36 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=37.1
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHh-cCCEEEEEc
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL-LGAEVRAVH 233 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~-~GA~V~~v~ 233 (465)
+|+..++|.-|..++.+++.+|-..+|++... +.++...+. .|++++...
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~-----~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS-----PERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC-----HHHHHHHHHhCCCeEeecC
Confidence 56678899999999999999999988888442 234455655 777776544
No 231
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=35.40 E-value=1.7e+02 Score=29.92 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=31.4
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+|+..++|.-|.+++..|+.+|.+++++.+.. +.+...++.+|++.+.
T Consensus 181 ~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~-----~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 181 RLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS-----EKEREAIDRLGADSFL 228 (375)
T ss_pred EEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh-----HHhHHHHHhCCCcEEE
Confidence 44445678899998888999998855554331 1123456778886543
No 232
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=35.26 E-value=1.6e+02 Score=29.96 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=39.9
Q ss_pred HHHcCCCeEEEEcCCChHHHHHHHHHHHcCCe--EEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCC
Q 012341 171 AKRLGKTRIIAETGAGQHGVATATVCARFGLQ--CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~--~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~ 235 (465)
+...|.+.. +..+||..+.-+|..+ +|++ -.|++|.-+. ..-...+...|+++++++.+
T Consensus 35 a~~~g~~~~-~~~~sgt~Al~~al~~--l~~~~gdeVi~p~~t~---~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 35 AEYFGVKYA-VAVSSGTSALHLALRA--LGLGPGDEVIVPAYTF---PATASAILWAGAEPVFVDID 95 (363)
T ss_dssp HHHHTSSEE-EEESSHHHHHHHHHHH--TTGGTTSEEEEESSS----THHHHHHHHTT-EEEEE-BE
T ss_pred HHHhCCCeE-EEeCChhHHHHHHHHh--cCCCcCceEecCCCcc---hHHHHHHHHhccEEEEEecc
Confidence 334566654 4677998888888877 5554 7888888542 22345689999999999865
No 233
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=35.23 E-value=3.6e+02 Score=24.83 Aligned_cols=73 Identities=12% Similarity=0.030 Sum_probs=41.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
.++|+.++|.-|.++|..-.+.|.++++...... +............+.++..+..+-.+ .+...++++...+
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~v~~~~~~~~~ 76 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFSGN-DCAKDWFEEYGFTEDQVRLKELDVTD-TEECAEALAEIEE 76 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHhhccCCeEEEEEcCCCC-HHHHHHHHHHHHH
Confidence 4678888889999999987778988777765422 11111111223345566665543222 3334444444333
No 234
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=34.93 E-value=1.7e+02 Score=28.28 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=32.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V 229 (465)
..+++...+|..|.+++..++.+|.+++..... . .+...++.+|+..
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~--~----~~~~~~~~~g~~~ 180 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAGAHVVAVVGS--P----ARAEGLRELGAAE 180 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCC--H----HHHHHHHHcCCcE
Confidence 445666666899999999999999986555432 1 2444567788763
No 235
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=34.91 E-value=1.1e+02 Score=30.27 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=31.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCe-EEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~-~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+.++|. ++|--|.+++..++.+|.+ +++ +.. + +.|...++.+|++.+.
T Consensus 165 ~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~-~~~-~----~~~~~~~~~~ga~~~i 213 (339)
T cd08239 165 DTVLVV-GAGPVGLGALMLARALGAEDVIG-VDP-S----PERLELAKALGADFVI 213 (339)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCEEEE-ECC-C----HHHHHHHHHhCCCEEE
Confidence 344554 5788999988899999998 444 322 2 1244557888986543
No 236
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=34.65 E-value=1.1e+02 Score=32.20 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=37.6
Q ss_pred EEEcCCChHHHHHHHHHHHcCCeEEEEEcCCC--hhhHHHhHHHHHhcCCEEEEE
Q 012341 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD--MERQALNVFRMRLLGAEVRAV 232 (465)
Q Consensus 180 Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~--~~~~~~k~~~~~~~GA~V~~v 232 (465)
|+.-++||.|.-+|..+.++|.+++++..... +......+..++..|.+++.-
T Consensus 275 VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 275 VVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 44567999999999999999999999886531 111122335577788887653
No 237
>PRK06198 short chain dehydrogenase; Provisional
Probab=34.63 E-value=3.9e+02 Score=25.02 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=42.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.++|+..+|.-|..+|......|.+.++++.... +........++..|.++..+..+..+ .+...+.++..
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~-~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~ 78 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA-EKGEAQAAELEALGAKAVFVQADLSD-VEDCRRVVAAA 78 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH-HHHHHHHHHHHhcCCeEEEEEccCCC-HHHHHHHHHHH
Confidence 44678888889999999998889998444443322 11122223456678887665543222 33344444443
No 238
>PRK07814 short chain dehydrogenase; Provisional
Probab=34.60 E-value=4e+02 Score=25.18 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=42.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+.++|+.++|--|.++|......|.+++++.... +..+.-...++..|.++..+..+..+ .+...+++++..+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~ 83 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE--SQLDEVAEQIRAAGRRAHVVAADLAH-PEATAGLAGQAVE 83 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHH
Confidence 4577888888899999998888899887765432 11111223344456666554433222 3334444444433
No 239
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=34.59 E-value=1.2e+02 Score=30.70 Aligned_cols=46 Identities=15% Similarity=0.038 Sum_probs=30.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCe-EEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~-~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.++|. ++|.-|.+++..++.+|.. ++++-+. +.|...++.+|++-+
T Consensus 187 ~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~~------~~~~~~~~~~ga~~~ 233 (365)
T cd08277 187 TVAVF-GLGAVGLSAIMGAKIAGASRIIGVDIN------EDKFEKAKEFGATDF 233 (365)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHHHHHcCCCcE
Confidence 34444 6799999999999999985 4444332 224555788898533
No 240
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=34.32 E-value=3.9e+02 Score=24.87 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=43.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.++|+..+|.-|.++|..-...|.+++++..... ..+.....++..+.++..+..+-.+ .+...++++..
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~ 75 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDE--AAAAAAEALQKAGGKAIGVAMDVTD-EEAINAGIDYA 75 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHHHhcCCcEEEEEcCCCC-HHHHHHHHHHH
Confidence 35788888999999999997788998877754422 1112223355567777655543222 33344444443
No 241
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=34.08 E-value=1.5e+02 Score=29.43 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=31.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
..++|...++..|.+++..|+.+|++++++.... .+...++.+|++-+
T Consensus 167 ~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~v 214 (341)
T cd08297 167 DWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGD------EKLELAKELGADAF 214 (341)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH------HHHHHHHHcCCcEE
Confidence 4455555556799999999999999866664432 13334567886543
No 242
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=33.84 E-value=2.5e+02 Score=28.22 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=32.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+.++|. ++|--|.+++..|+.+|.+.++.+... +.|...++.+|++.+.
T Consensus 178 ~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~~-----~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 178 DSVAVI-GCGGVGDAAIAGAALAGASKIIAVDID-----DRKLEWAREFGATHTV 226 (358)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCC-----HHHHHHHHHcCCceEE
Confidence 334444 678899999999999999744444222 2255567889996443
No 243
>PRK12827 short chain dehydrogenase; Provisional
Probab=33.61 E-value=3.9e+02 Score=24.66 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=43.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC--CChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA--QDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~--~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
..++|+.++|--|.++|......|.+++++... ...+....-...+...|.++..+..+-.+ .+.....++...+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~ 83 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRD-FAATRAALDAGVE 83 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCC-HHHHHHHHHHHHH
Confidence 357888889999999999988889987775432 12121121223455667777666543223 3334444444333
No 244
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=33.58 E-value=1.4e+02 Score=29.30 Aligned_cols=46 Identities=24% Similarity=0.258 Sum_probs=30.4
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.++|. ++|--|.+++..|+.+|.+++++... . .+...++.+|+..+
T Consensus 158 ~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~~~--~----~~~~~~~~~g~~~~ 203 (319)
T cd08242 158 KVAVL-GDGKLGLLIAQVLALTGPDVVLVGRH--S----EKLALARRLGVETV 203 (319)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCeEEEEcCC--H----HHHHHHHHcCCcEE
Confidence 44444 57889999999999999995444322 1 24445667887653
No 245
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.26 E-value=4.1e+02 Score=24.89 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=41.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+..+|+.++|--|.++|......|.+++++..... .+...++..+...+.++-. + .+...++++...+.
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~-----~~~~~l~~~~~~~~~~Dl~--~-~~~~~~~~~~~~~~ 76 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE-----NEAKELREKGVFTIKCDVG--N-RDQVKKSKEVVEKE 76 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcH-----HHHHHHHhCCCeEEEecCC--C-HHHHHHHHHHHHHH
Confidence 35678888889999999998888998776653321 1222344445555555532 2 33344555544433
No 246
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=33.23 E-value=2.3e+02 Score=25.27 Aligned_cols=48 Identities=8% Similarity=0.141 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHcCCeEEEEEcCC--ChhhHHH---hHHHHHhcCCEEEEEc
Q 012341 186 GQHGVATATVCARFGLQCIVYMGAQ--DMERQAL---NVFRMRLLGAEVRAVH 233 (465)
Q Consensus 186 GNhg~AlA~aa~~~Gi~~~Vv~P~~--~~~~~~~---k~~~~~~~GA~V~~v~ 233 (465)
+|.+.+++.+++++|+.++++.|+. .+..+.. -.......|.++....
T Consensus 13 ~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 13 NRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp SHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred ChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 6999999999999999999999986 2221111 0123455699998874
No 247
>PRK06500 short chain dehydrogenase; Provisional
Probab=32.92 E-value=4e+02 Score=24.64 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=34.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
+.++|+..+|.-|.+++......|.+++++-.. . +.. ....+.+|.++..+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~-~-~~~---~~~~~~~~~~~~~~~~ 59 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD-P-ASL---EAARAELGESALVIRA 59 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC-H-HHH---HHHHHHhCCceEEEEe
Confidence 457888889999999999988899987665332 1 111 1123445777665543
No 248
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=32.79 E-value=3.5e+02 Score=26.02 Aligned_cols=64 Identities=19% Similarity=0.169 Sum_probs=43.1
Q ss_pred HHHcCCCeEEEEcCCC-hHHHHHHHHHHHcC-Ce-EEEEEcCC--ChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 171 AKRLGKTRIIAETGAG-QHGVATATVCARFG-LQ-CIVYMGAQ--DMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsG-Nhg~AlA~aa~~~G-i~-~~Vv~P~~--~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
.++.+.+++|+.-|+| +.+..++.+.+.+| -+ ..|+||.. +....+.-....+.+|.+...++-
T Consensus 13 ~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i 81 (242)
T PF02540_consen 13 VKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDI 81 (242)
T ss_dssp HHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEES
T ss_pred HHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccch
Confidence 4456777788888888 77777777777786 34 45788852 222222334457889999988864
No 249
>PRK09242 tropinone reductase; Provisional
Probab=32.64 E-value=4.2e+02 Score=24.81 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=42.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhc--CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL--GAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~--GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+..+|+.++|.-|.++|......|.+++++..... ..+.....++.. +.++..+..+-.+ .+....+++...++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~ 85 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDAD--ALAQARDELAEEFPEREVHGLAADVSD-DEDRRAILDWVEDH 85 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHHhhCCCCeEEEEECCCCC-HHHHHHHHHHHHHH
Confidence 34677888889999999998889998776654321 111112223333 6677766544222 33344445544433
No 250
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=32.57 E-value=4.3e+02 Score=27.50 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=39.4
Q ss_pred CCeEEEEcCCC-hHHHHHHHHHHHcCCeEEEEEcCC-Ch-hhHHHhHHHHHhcCCE-EEEEc
Q 012341 176 KTRIIAETGAG-QHGVATATVCARFGLQCIVYMGAQ-DM-ERQALNVFRMRLLGAE-VRAVH 233 (465)
Q Consensus 176 ~~~~Vv~aSsG-Nhg~AlA~aa~~~Gi~~~Vv~P~~-~~-~~~~~k~~~~~~~GA~-V~~v~ 233 (465)
.+++|+++|+| +|.+++-|.-...|..++-|+-+. -+ +....-.+....+||. .+.++
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD 65 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVID 65 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEee
Confidence 35688899999 899999999999999988888541 11 1111222335567987 55554
No 251
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=32.44 E-value=2.1e+02 Score=28.68 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=37.2
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~ 233 (465)
++.+..-.+|...+++.+++++|++++++-|+.-...........+..|.++...+
T Consensus 154 ~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 154 KVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred EEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 34444445689999999999999999999998532111111112466788887653
No 252
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=32.31 E-value=2.1e+02 Score=28.93 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=29.8
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
++| .++|--|.+++..|+.+|.+++++.... +.+...++.+|++.+
T Consensus 184 vlV-~G~G~vG~~av~~Ak~~G~~vi~~~~~~-----~~~~~~~~~~Ga~~~ 229 (357)
T PLN02514 184 GGI-LGLGGVGHMGVKIAKAMGHHVTVISSSD-----KKREEALEHLGADDY 229 (357)
T ss_pred EEE-EcccHHHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHhcCCcEE
Confidence 444 4678899998889999998865554321 112234567888643
No 253
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=32.26 E-value=3.8e+02 Score=24.13 Aligned_cols=102 Identities=14% Similarity=0.067 Sum_probs=53.4
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCC
Q 012341 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (465)
Q Consensus 189 g~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~ 268 (465)
|..+.++++.+|.+..--++..+. -..-+..+...+.+|.+++.. .+..+.+.+.+.++..+ .-+.+.. +
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl--~~~ll~~~~~~~~~v~llG~~----~~~~~~~~~~l~~~yp~-l~i~g~~---~ 80 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDL--MPALLELAAQKGLRVFLLGAK----PEVLEKAAERLRARYPG-LKIVGYH---H 80 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHH--HHHHHHHHHHcCCeEEEECCC----HHHHHHHHHHHHHHCCC-cEEEEec---C
Confidence 567888999999984444443222 122334455568899999754 23333333333333333 2333322 3
Q ss_pred CchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchh
Q 012341 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSN 309 (465)
Q Consensus 269 p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~ 309 (465)
+|-. .- .-.+++.+|.+ ..||.|+|+.|.---
T Consensus 81 g~~~---~~---~~~~i~~~I~~---~~pdiv~vglG~PkQ 112 (171)
T cd06533 81 GYFG---PE---EEEEIIERINA---SGADILFVGLGAPKQ 112 (171)
T ss_pred CCCC---hh---hHHHHHHHHHH---cCCCEEEEECCCCHH
Confidence 3311 00 01223444432 359999999987543
No 254
>PRK06482 short chain dehydrogenase; Provisional
Probab=32.07 E-value=4.5e+02 Score=24.97 Aligned_cols=32 Identities=6% Similarity=-0.040 Sum_probs=26.6
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
.++|+.++|.-|.++|......|.+++++...
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46788889999999999988889988777643
No 255
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.02 E-value=1.9e+02 Score=29.43 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=35.3
Q ss_pred EEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 180 Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
|...+.|-.|.-.-..|+.+|++++++-.... .|-+.++.|||+...+..
T Consensus 185 vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~-----kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 185 VGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK-----KKEEAIKSLGADVFVDST 234 (360)
T ss_pred EEEecCcccchHHHHHHHHhCcEEEEEeCCch-----hHHHHHHhcCcceeEEec
Confidence 33344444777666779999999999865431 245669999999987754
No 256
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=31.73 E-value=2.9e+02 Score=26.87 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=32.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
..++|...+|.-|.+++..|+.+|.+++++..... +...++.+|++-+
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~------~~~~~~~~g~~~~ 188 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDA------GVAELRALGIGPV 188 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHH------HHHHHHhcCCCEE
Confidence 34455555688999999999999998766654321 3334566787543
No 257
>PRK06180 short chain dehydrogenase; Provisional
Probab=31.70 E-value=4.6e+02 Score=25.01 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=26.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+.++|+.++|.-|.+++......|.+++++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r 36 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVR 36 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeC
Confidence 35788888999999999998888999777654
No 258
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=31.60 E-value=2.9e+02 Score=26.83 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=30.9
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.+++ .++|..|.+++..++..|.++++..+.. .+.+.++.+|++.+.
T Consensus 163 ~vli-~g~g~~g~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~~~ 209 (336)
T cd08276 163 TVLV-QGTGGVSLFALQFAKAAGARVIATSSSD------EKLERAKALGADHVI 209 (336)
T ss_pred EEEE-ECCcHHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHHcCCCEEE
Confidence 3444 4678899999999999999965554331 233445567876543
No 259
>PRK08017 oxidoreductase; Provisional
Probab=31.52 E-value=3.5e+02 Score=25.20 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=35.4
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
.++|+..+|.-|.++|......|.+++++.... .+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~------~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP------DDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH------HHhHHHHhCCCeEEEeec
Confidence 467788889999999999888899876654331 123335566877766653
No 260
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=31.49 E-value=1.8e+02 Score=29.01 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=29.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V 229 (465)
.++| .++|..|.+++..++.+|.+.+++.... ..|...++.+|++.
T Consensus 178 ~vlI-~g~g~vg~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~ 223 (350)
T cd08240 178 PVVI-IGAGGLGLMALALLKALGPANIIVVDID-----EAKLEAAKAAGADV 223 (350)
T ss_pred EEEE-ECCcHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCcE
Confidence 3444 4678899999999999999644444321 12344467778753
No 261
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.47 E-value=4e+02 Score=26.43 Aligned_cols=85 Identities=13% Similarity=0.123 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCC-E-EEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA-E-VRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 175 g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA-~-V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
..+.++||..|.--|.++|+.-.+.|.+.+++..... +.+...+.++..|+ + |+.+.-+-.+.++ +..+++....
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~r--rl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~-~~~~~~~~~~ 87 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRAR--RLERVAEELRKLGSLEKVLVLQLDVSDEES-VKKFVEWAIR 87 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhh--hHHHHHHHHHHhCCcCccEEEeCccCCHHH-HHHHHHHHHH
Confidence 3445677777777899999999999999999886632 11211144555543 4 5555543334444 3444444333
Q ss_pred ccCCceEEec
Q 012341 253 NVETTHYILG 262 (465)
Q Consensus 253 ~~~~~~y~~~ 262 (465)
...+-..++|
T Consensus 88 ~fg~vDvLVN 97 (282)
T KOG1205|consen 88 HFGRVDVLVN 97 (282)
T ss_pred hcCCCCEEEe
Confidence 3344344443
No 262
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=31.34 E-value=1.3e+02 Score=31.52 Aligned_cols=48 Identities=23% Similarity=0.249 Sum_probs=34.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.+.|+..+.|.-|..+|..++.+|.+++++=+ ++ .+....+.+|++++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~--d~----~R~~~A~~~G~~~~ 249 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEV--DP----ICALQAAMEGYEVM 249 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC--Ch----hhHHHHHhcCCEEc
Confidence 34566688999999999999999998666422 22 23445777898654
No 263
>PRK07201 short chain dehydrogenase; Provisional
Probab=31.28 E-value=4.3e+02 Score=28.96 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=48.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.++|.-|.++|..-...|.+++++.... +..+.....++..|.++..+..+-.+ .+...++++...++...
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~~g~ 448 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNG--EALDELVAEIRAKGGTAHAYTCDLTD-SAAVDHTVKDILAEHGH 448 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCcEEEEEecCCC-HHHHHHHHHHHHHhcCC
Confidence 3467888888999999998888899877766432 11122223355567777665543223 33344555554444333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-..+++
T Consensus 449 id~li~ 454 (657)
T PRK07201 449 VDYLVN 454 (657)
T ss_pred CCEEEE
Confidence 334443
No 264
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=31.10 E-value=4.4e+02 Score=24.49 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=26.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+.++|+..+|.-|.++|......|.+++++..
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~ 40 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQ 40 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 45778888889999999998889998888754
No 265
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.03 E-value=4.4e+02 Score=24.47 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=26.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+.++|+.++|.-|.++|......|.++++...
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 45788888999999999998888998776553
No 266
>PLN02253 xanthoxin dehydrogenase
Probab=30.98 E-value=4.4e+02 Score=25.12 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=26.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+.++|+.++|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 45788898999999999998888998777643
No 267
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=30.80 E-value=3.7e+02 Score=26.48 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=31.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V 229 (465)
+.++|. ++|.-|.+++..++.+|+..+++... . +.|...++.+|+.+
T Consensus 169 ~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~~~-~----~~~~~~~~~~g~~~ 215 (344)
T cd08284 169 DTVAVI-GCGPVGLCAVLSAQVLGAARVFAVDP-V----PERLERAAALGAEP 215 (344)
T ss_pred CEEEEE-CCcHHHHHHHHHHHHcCCceEEEEcC-C----HHHHHHHHHhCCeE
Confidence 345554 68899999999999999843344422 2 12444577799864
No 268
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=30.68 E-value=3.2e+02 Score=27.13 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=31.9
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.++|. ++|..|.+++..|+.+|.+.+++.... ..|...++.+|++.+.
T Consensus 175 ~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~~~-----~~~~~~~~~~ga~~~i 222 (351)
T cd08233 175 TALVL-GAGPIGLLTILALKAAGASKIIVSEPS-----EARRELAEELGATIVL 222 (351)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEE
Confidence 34444 578899999999999999544444322 1244456778997654
No 269
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=30.64 E-value=4.5e+02 Score=24.54 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=36.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
+.++|+.++|.-|.++|......|.+++++..... ....-...++..|.++..+..
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~ 67 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAA--TLEAAVAALRAAGGAAEALAF 67 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHH--HHHHHHHHHHhcCCceEEEEc
Confidence 45778888889999999998888998777654321 111122335556766655543
No 270
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.52 E-value=4.4e+02 Score=24.36 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=26.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
+.++|+.++|.-|.+++......|.+++++...
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 357888889999999999988889996666543
No 271
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=30.27 E-value=2.2e+02 Score=28.19 Aligned_cols=47 Identities=28% Similarity=0.358 Sum_probs=32.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
..++|...+|.-|.+++..|+.+|.+++++... . +...++.+|++.+
T Consensus 179 ~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~------~-~~~~~~~~g~~~~ 225 (350)
T cd08274 179 ETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA------A-KEEAVRALGADTV 225 (350)
T ss_pred CEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc------h-hhHHHHhcCCeEE
Confidence 345555556999999999999999996555422 1 3344677888643
No 272
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=30.10 E-value=2.3e+02 Score=25.34 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=36.1
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
.|+..++|+-|...+..+..+|.+++++ +..+ .+.+..+.+++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~--d~~~----~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVP--DERP----ERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEE--ESSH----HHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEec--cCCH----HHHHhhhcccCceEEEcc
Confidence 3555779999999999999999986665 4332 244557888998877753
No 273
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=30.01 E-value=1.5e+02 Score=27.68 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=28.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~ 228 (465)
..+++...++ .|.+++..++..|.+++++.+.. .+...++.+|++
T Consensus 136 ~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~ 180 (271)
T cd05188 136 DTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSD------EKLELAKELGAD 180 (271)
T ss_pred CEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCH------HHHHHHHHhCCc
Confidence 3455555445 99999999999997766664431 123345666654
No 274
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=29.81 E-value=2.9e+02 Score=26.82 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=33.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
..++|...+|..|.+++..++.+|.+.+++... . .+...++.+|++.+.
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~--~----~~~~~~~~~g~~~~~ 190 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYGAATIITTSS--E----EKVDFCKKLAAIILI 190 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC--H----HHHHHHHHcCCcEEE
Confidence 345555557999999999999999987665433 1 133445678986444
No 275
>PRK05650 short chain dehydrogenase; Provisional
Probab=29.77 E-value=4.9e+02 Score=24.66 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=37.4
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~ 235 (465)
+++|+.++|.-|.++|......|.+++++..... ..+.-...++..|.++..+..+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~--~~~~~~~~l~~~~~~~~~~~~D 57 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEE--GGEETLKLLREAGGDGFYQRCD 57 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEEcc
Confidence 3678888999999999998888998777654321 1122233455667777665543
No 276
>PRK05855 short chain dehydrogenase; Validated
Probab=29.68 E-value=5.5e+02 Score=27.32 Aligned_cols=74 Identities=16% Similarity=0.056 Sum_probs=44.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
...+|+.++|--|.++|......|.+++++-.. .+..+.-...++..|.++..+..+-.+ .+.+.+.+++..++
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~~~~~~~~~~~~ 389 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDID--EAAAERTAELIRAAGAVAHAYRVDVSD-ADAMEAFAEWVRAE 389 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEEcCCCC-HHHHHHHHHHHHHh
Confidence 446778888889999999988899996665432 121222223456678777665543222 33444555544333
No 277
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=29.58 E-value=2.2e+02 Score=27.88 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=30.2
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.+++. ++|..|.+++..|+.+|.+++++.+. . .+...++.+|++.+
T Consensus 168 ~vli~-g~g~vG~~~~~la~~~G~~V~~~~~s--~----~~~~~~~~~g~~~~ 213 (338)
T cd08254 168 TVLVI-GLGGLGLNAVQIAKAMGAAVIAVDIK--E----EKLELAKELGADEV 213 (338)
T ss_pred EEEEE-CCcHHHHHHHHHHHHcCCEEEEEcCC--H----HHHHHHHHhCCCEE
Confidence 45554 57888999999999999985554332 1 23344677787543
No 278
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=29.48 E-value=96 Score=28.64 Aligned_cols=48 Identities=27% Similarity=0.386 Sum_probs=32.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~ 233 (465)
-+.|--.|||-+|.++|.++...|-+++++....... + -.|.+++.+.
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~-~--------p~~~~~i~v~ 67 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP-P--------PPGVKVIRVE 67 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------------TTEEEEE-S
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc-c--------cccceEEEec
Confidence 3567778999999999999999999999999774321 1 1366777775
No 279
>PRK07063 short chain dehydrogenase; Provisional
Probab=29.40 E-value=4.8e+02 Score=24.46 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=44.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHh--cCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL--LGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~--~GA~V~~v~~~~~~~~da~~~a~~~~~~~~ 254 (465)
+.++|+.++|--|.++|..-...|.+++++.... +..+.-...++. .+.++..+..+-.+ .+....+++...++.
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDA--ALAERAAAAIARDVAGARVLAVPADVTD-AASVAAAVAAAEEAF 84 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhccCCceEEEEEccCCC-HHHHHHHHHHHHHHh
Confidence 4567888888899999998888899877665432 111112223443 46666555533222 233444444444333
Q ss_pred CCceEEec
Q 012341 255 ETTHYILG 262 (465)
Q Consensus 255 ~~~~y~~~ 262 (465)
..-..+++
T Consensus 85 g~id~li~ 92 (260)
T PRK07063 85 GPLDVLVN 92 (260)
T ss_pred CCCcEEEE
Confidence 33334443
No 280
>PRK06138 short chain dehydrogenase; Provisional
Probab=29.32 E-value=4.6e+02 Score=24.25 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=42.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~ 253 (465)
+.++|+.++|--|.++|......|.+++++.... +........++ .|.++..+..+-.+ .+...++++...++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~-~~~~~~~~~~D~~~-~~~~~~~~~~i~~~ 78 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDA--EAAERVAAAIA-AGGRAFARQGDVGS-AEAVEALVDFVAAR 78 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH--HHHHHHHHHHh-cCCeEEEEEcCCCC-HHHHHHHHHHHHHH
Confidence 3578888899999999998778898866665332 11112222233 57777666543223 33344444444433
No 281
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=29.23 E-value=2.1e+02 Score=27.65 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=32.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
+.++|...+|..|.++...|+..|.+++.+.... .+...++.+|++-+
T Consensus 144 ~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~ 191 (320)
T cd08243 144 DTLLIRGGTSSVGLAALKLAKALGATVTATTRSP------ERAALLKELGADEV 191 (320)
T ss_pred CEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHhcCCcEE
Confidence 3455555568999999999999999865554331 13344567887543
No 282
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=29.22 E-value=4.9e+02 Score=26.55 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=41.4
Q ss_pred CCCCccHHHHHHHHHHHHH---cCCCeE-EEEcCCChHHHHHHHHHH---HcCCeEEEEEcCC-ChhhHHHhHHHHHhcC
Q 012341 155 HTGAHKINNAVGQALLAKR---LGKTRI-IAETGAGQHGVATATVCA---RFGLQCIVYMGAQ-DMERQALNVFRMRLLG 226 (465)
Q Consensus 155 pTGSfK~Rga~~~~~~a~~---~g~~~~-Vv~aSsGNhg~AlA~aa~---~~Gi~~~Vv~P~~-~~~~~~~k~~~~~~~G 226 (465)
+.|....|-+......... ...+.+ |+.++++++|..++..+- .-|= .|++|.- .+. -...++.+|
T Consensus 68 ~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd--~Vlv~~P~y~~----~~~~~~~~g 141 (396)
T PRK09257 68 IEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDA--KVWVSDPTWPN----HRAIFEAAG 141 (396)
T ss_pred CCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCC--eEEECCCCccc----HHHHHHHcC
Confidence 4677777876554432111 123444 345667788887775322 2343 4555542 211 233478899
Q ss_pred CEEEEEcC
Q 012341 227 AEVRAVHS 234 (465)
Q Consensus 227 A~V~~v~~ 234 (465)
++++.++.
T Consensus 142 ~~~v~v~~ 149 (396)
T PRK09257 142 LEVKTYPY 149 (396)
T ss_pred CcEEEEec
Confidence 99998863
No 283
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=29.14 E-value=4.7e+02 Score=24.29 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCeEEEE-EcCCChhhHHHhHHHHHhcCCEEEEEcCC-CCCHHHHHHHHHHHHHHccCCceEEeccC-
Q 012341 188 HGVATATVCARFGLQCIVY-MGAQDMERQALNVFRMRLLGAEVRAVHSG-TATLKDATSEAIRDWVTNVETTHYILGSV- 264 (465)
Q Consensus 188 hg~AlA~aa~~~Gi~~~Vv-~P~~~~~~~~~k~~~~~~~GA~V~~v~~~-~~~~~da~~~a~~~~~~~~~~~~y~~~s~- 264 (465)
...++-.+|+.+|+...++ -...+...+...++.+...|.+-+.+... .....+.. +.+.++ .-....+++.
T Consensus 16 ~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l----~~~~~~-gIpvv~~d~~~ 90 (257)
T PF13407_consen 16 VIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFL----EKAKAA-GIPVVTVDSDE 90 (257)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHH----HHHHHT-TSEEEEESSTH
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHH----HHHhhc-CceEEEEeccc
Confidence 3444555566677776665 33344444444555565666664444322 11222222 221211 1112222222
Q ss_pred CCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCchhHH------HHhHHhhcCCCcEEEE
Q 012341 265 AGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAM------GLFHEFVNDKDVRLIG 327 (465)
Q Consensus 265 ~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG~~a------Gi~~~~~~~p~~rvig 327 (465)
....+....+..-+...|...+.++.++.+.. ..|++-.|.-+... |+..+++..+.++++.
T Consensus 91 ~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~-~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~ 158 (257)
T PF13407_consen 91 APDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK-GKVLILSGSPGNPNTQERLEGFRDALKEYPGVEIVD 158 (257)
T ss_dssp HTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT-EEEEEEESSTTSHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cccccceeeeeccHHHHHHHHHHHHHHHhccC-ceEEeccCCCCchHHHHHHHHHHHHHhhcceeeeee
Confidence 01111111111223456777778888887644 34443344433322 3334444557888887
No 284
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=29.07 E-value=84 Score=32.33 Aligned_cols=31 Identities=32% Similarity=0.446 Sum_probs=27.0
Q ss_pred EEEcCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 012341 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (465)
Q Consensus 180 Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~ 210 (465)
|-.=++|+.|+-++.+|+++|++++|+=|..
T Consensus 4 vgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~ 34 (375)
T COG0026 4 VGILGGGQLGRMMALAAARLGIKVIVLDPDA 34 (375)
T ss_pred EEEEcCcHHHHHHHHHHHhcCCEEEEecCCC
Confidence 3334789999999999999999999999873
No 285
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=29.06 E-value=1.7e+02 Score=29.31 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=31.9
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.|+..++|..|.+++..++.+|.+++++- . + +.|...++.+|++.+.
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G~~vi~~~-~-~----~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMGAAVVAID-I-D----PEKLEMMKGFGADLTL 215 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEc-C-C----HHHHHHHHHhCCceEe
Confidence 44445569999999999999999744432 2 2 2245567889987543
No 286
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=28.97 E-value=2e+02 Score=28.13 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=30.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~ 228 (465)
..++| .++|.-|.+++..++..|++++++.+... +...++.+|++
T Consensus 169 ~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~~~------~~~~~~~~g~~ 213 (329)
T cd08298 169 QRLGL-YGFGASAHLALQIARYQGAEVFAFTRSGE------HQELARELGAD 213 (329)
T ss_pred CEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCChH------HHHHHHHhCCc
Confidence 34454 46788999988899999988766654421 33445678874
No 287
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=28.93 E-value=2.5e+02 Score=27.22 Aligned_cols=48 Identities=17% Similarity=0.306 Sum_probs=33.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
..++|...+|..|.+++..|+.+|.+++++.+.. .+...++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTGKE------EQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH------HHHHHHHhcCCcEE
Confidence 3566666669999999999999999855554331 23445677887543
No 288
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=28.73 E-value=4.8e+02 Score=24.19 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=41.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
.++|+.++|--|.+++......|.+++++..... ..+.-...++..+.++..+..+-.+ .+....+++..
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~ 72 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEA--GAEAAAKVATDAGGSVIYLVADVTK-EDEIADMIAAA 72 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHhcCCceEEEECCCCC-HHHHHHHHHHH
Confidence 4678888899999999998888998777764422 1111112244557777666543322 23333444443
No 289
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=28.53 E-value=3.7e+02 Score=22.83 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=33.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEE-cCCChhhHHH-hHHHHHhcCCEEEEEcC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYM-GAQDMERQAL-NVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~-P~~~~~~~~~-k~~~~~~~GA~V~~v~~ 234 (465)
..+++.++|..|.+++......|...++++ .......... -...++..|.++..+..
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVAC 60 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEEC
Confidence 356778888899999998888887544444 2211110111 12345556777766554
No 290
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=28.47 E-value=1.4e+02 Score=26.43 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=28.2
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~ 210 (465)
++|..++|+.|..++......|.++++++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 45678899999999999999999999999763
No 291
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=28.37 E-value=2.4e+02 Score=28.09 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=32.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.++|. ++|..|.+++..|+.+|.+.++.+... +.|...++.+|++-+
T Consensus 163 ~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 163 NVIII-GAGTIGLLAIQCAVALGAKSVTAIDIN-----SEKLALAKSLGAMQT 209 (347)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCceE
Confidence 44444 679999999999999999865555332 224445788898644
No 292
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=28.28 E-value=7e+02 Score=25.96 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=37.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHc--CCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEc
Q 012341 178 RIIAETGAGQHGVATATVCARF--GLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~--Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~ 233 (465)
++.|-.|+|+-|.+..-+.+.. .++++.+.-....++ -.++.+.++.+.+.+.
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~---l~~q~~~f~p~~v~i~ 57 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVEL---LAEQAREFRPKYVVVA 57 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHH---HHHHHHHhCCCEEEEc
Confidence 4566788999999877776665 677777765544332 2346888999988775
No 293
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=28.28 E-value=1.9e+02 Score=29.56 Aligned_cols=49 Identities=16% Similarity=0.155 Sum_probs=34.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+.++|...+|..|.+++..++.+|.+.+++.+. ..+...++.+|++.+.
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s------~~~~~~~~~~G~~~~i 243 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAGANPVAVVSS------EEKAEYCRALGAEGVI 243 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCC------HHHHHHHHHcCCCEEE
Confidence 345555556899999999999999997665432 1244557789986543
No 294
>PRK07576 short chain dehydrogenase; Provisional
Probab=28.23 E-value=5.2e+02 Score=24.48 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=42.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+.++|+..+|.-|.++|......|.+++++....+ ..+.....+...+.+++.+..+-.+ .+.....+++..+
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~Dv~~-~~~i~~~~~~~~~ 82 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQE--KVDAAVAQLQQAGPEGLGVSADVRD-YAAVEAAFAQIAD 82 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHHHHHHHhCCceEEEECCCCC-HHHHHHHHHHHHH
Confidence 45778888889999999988888998777654321 1111223355556666555433222 3334444554433
No 295
>PRK07024 short chain dehydrogenase; Provisional
Probab=28.12 E-value=5.1e+02 Score=24.32 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=25.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
.++|+.++|--|.++|......|.+++++-.
T Consensus 4 ~vlItGas~gIG~~la~~l~~~G~~v~~~~r 34 (257)
T PRK07024 4 KVFITGASSGIGQALAREYARQGATLGLVAR 34 (257)
T ss_pred EEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4678888889999999998888987766643
No 296
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.03 E-value=6.8e+02 Score=26.00 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=42.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+..+|+..+|.-|.++|......|.+++++-..... +........++++++.++.. + .+.....++...+
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~---~~l~~~~~~~~~~~~~~Dv~--~-~~~~~~~~~~~~~ 280 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG---EALAAVANRVGGTALALDIT--A-PDAPARIAEHLAE 280 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH---HHHHHHHHHcCCeEEEEeCC--C-HHHHHHHHHHHHH
Confidence 356778888899999999988899997776543221 11112244567777776642 2 3334444444433
No 297
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=27.76 E-value=3.5e+02 Score=25.10 Aligned_cols=61 Identities=21% Similarity=0.145 Sum_probs=42.5
Q ss_pred HHHcCCCeEEEEcCCChHHHH-HHHHHHHcCCeEEEEEcCCC-----hhhHHHhHHHHHhcCCEEEE
Q 012341 171 AKRLGKTRIIAETGAGQHGVA-TATVCARFGLQCIVYMGAQD-----MERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~A-lA~aa~~~Gi~~~Vv~P~~~-----~~~~~~k~~~~~~~GA~V~~ 231 (465)
+++.+.+.+|++.-..|.++- .|..|..+|++++|+-.... ++.....+..|+..|++|+.
T Consensus 137 L~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~t 203 (212)
T PRK11609 137 LREHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLYT 203 (212)
T ss_pred HHHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEEE
Confidence 345677778888777787764 45558999999999887532 22223456778888988864
No 298
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=27.44 E-value=92 Score=33.29 Aligned_cols=43 Identities=28% Similarity=0.398 Sum_probs=32.5
Q ss_pred cCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 183 TGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 183 aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
.|||-.|.++|.++...|-+++++....+.. .-.|.+++.|+.
T Consensus 279 ~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---------~p~~v~~i~V~t 321 (475)
T PRK13982 279 RSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---------DPQGVKVIHVES 321 (475)
T ss_pred CCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---------CCCCceEEEecC
Confidence 3788899999999999999999998543211 125678887764
No 299
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=27.41 E-value=1.9e+02 Score=29.61 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=33.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
..++|...+|.-|.+++..++.+|.+.+++.+. . .+...++.+|+..+.
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~--~----~~~~~~~~~g~~~~v 239 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAGGGNPVAVVSS--P----EKAEYCRELGAEAVI 239 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCC--H----HHHHHHHHcCCCEEe
Confidence 345555556999999999999999997555432 1 234457779987554
No 300
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=27.38 E-value=3.4e+02 Score=28.92 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=32.0
Q ss_pred CeEEEEcCCCh-HHHHHHHH--HHHcCCeEEEEEcCCCh-hhHHHhHHHHHhcCCEE
Q 012341 177 TRIIAETGAGQ-HGVATATV--CARFGLQCIVYMGAQDM-ERQALNVFRMRLLGAEV 229 (465)
Q Consensus 177 ~~~Vv~aSsGN-hg~AlA~a--a~~~Gi~~~Vv~P~~~~-~~~~~k~~~~~~~GA~V 229 (465)
.+++|.++.|| -|=+++.| ....|+++.|+++.... .....+..+++.+|..+
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~ 116 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKRTDKPLYNGLVTQLESLSVPF 116 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECCCCCHHHHHHHHHHHHcCCce
Confidence 35667777885 45455544 55579999999875321 11223445667777554
No 301
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=27.16 E-value=2.3e+02 Score=28.04 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=33.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V 229 (465)
+.++| .++|..|.+++..++..|++.++.+.... .+...++.+|++-
T Consensus 170 ~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~~-----~~~~~~~~~ga~~ 216 (345)
T cd08287 170 STVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRHE-----DRQALAREFGATD 216 (345)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCH-----HHHHHHHHcCCce
Confidence 34555 56899999999999999998666664432 2445678888843
No 302
>PRK12831 putative oxidoreductase; Provisional
Probab=27.14 E-value=1.8e+02 Score=30.88 Aligned_cols=52 Identities=15% Similarity=0.251 Sum_probs=36.0
Q ss_pred EEEcCCChHHHHHHHHHHHcCCeEEEEEcCCC--hhhHHHhHHHHHhcCCEEEE
Q 012341 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQD--MERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 180 Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~--~~~~~~k~~~~~~~GA~V~~ 231 (465)
|+.-++||.|.-+|..+.++|.+++++..... .......+..++..|.+++.
T Consensus 284 VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~ 337 (464)
T PRK12831 284 VAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDL 337 (464)
T ss_pred EEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEe
Confidence 44567999999999999999999988876431 11111233446677877764
No 303
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=27.10 E-value=3.1e+02 Score=24.66 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=38.6
Q ss_pred HHHcCCCeEEEEcCCChHHH-HHHHHHHHcCCeEEEEEcCC---ChhhHHHhHHHHHhcCCEEE
Q 012341 171 AKRLGKTRIIAETGAGQHGV-ATATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~-AlA~aa~~~Gi~~~Vv~P~~---~~~~~~~k~~~~~~~GA~V~ 230 (465)
+++.|.+++|++.-..|.++ +.|..|..+|++++|+--.. +.+....-+..|+..+++|+
T Consensus 109 L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a~~~~~~h~~al~~l~~~~~~v~ 172 (179)
T cd01015 109 LTARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVGDRAPAPHEANLFDIDNKYGDVV 172 (179)
T ss_pred HHHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeeccccCCCHHHHHHHHHHHHhhceeec
Confidence 45678788888877778777 55556899999998887652 22222233444545555654
No 304
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=27.02 E-value=6.1e+02 Score=24.88 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=24.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+.++|+.++|--|.++|......|.+++++..
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 45778888888888888888888988766643
No 305
>PRK07775 short chain dehydrogenase; Provisional
Probab=27.00 E-value=5.6e+02 Score=24.43 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=42.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRD 249 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~ 249 (465)
+.++|+..+|--|.+++......|.+++++.... +..+.-...++..|.++..+..+-.+ .+....+++.
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~~~ 80 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRV--EKCEELVDKIRADGGEAVAFPLDVTD-PDSVKSFVAQ 80 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCC-HHHHHHHHHH
Confidence 4577888888999999998888899876665331 11111122355668887766543222 3334444444
No 306
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=26.89 E-value=1.3e+02 Score=30.08 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=53.7
Q ss_pred cccCCCCCCCCCCCCCCccCCCCccccccchhHHHHHHHHHHHHhcCCc------hHHHHHHHHHhhhcCCCCCeEeccc
Q 012341 58 AKKESDPAPWQRPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDR------DFQEELSGILRDYVGRETPLYFAER 131 (465)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~gG~~~P~~~~~~~~~i~~a~~~~~~~~------~~~~~l~~~i~~~vg~~TPL~~l~~ 131 (465)
|.+..-|++|..-|..--++.||+..+|+.-..++..=.-++.-+...| +..-.|++-+.-|- .-.|...++.
T Consensus 58 f~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~kgh~S~nl~LRK~f~LyA-NVRPc~SieG 136 (365)
T KOG0785|consen 58 FEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGKGHRSLNLALRKEFGLYA-NVRPCKSIEG 136 (365)
T ss_pred HHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCccccccccHHHHHHHHhchhc-cceecccccC
Confidence 5678889999999999999999999999976544443332332222222 22233444443333 2346666666
Q ss_pred cchhhcCCCCCCCeEEEeeCCC
Q 012341 132 LTEHYRRPNGGGPHIYLKREDL 153 (465)
Q Consensus 132 Ls~~l~~~~~~g~~i~lK~E~~ 153 (465)
+...| ...++-+-||+.
T Consensus 137 ~Kt~Y-----~~vD~V~IRENT 153 (365)
T KOG0785|consen 137 YKTPY-----DDVDLVIIRENT 153 (365)
T ss_pred CcCCC-----CCceEEEEecCC
Confidence 55444 345555555554
No 307
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=26.85 E-value=2.3e+02 Score=27.97 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=29.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcC-CeEEEEEcCCChhhHHHhHHHHHhcCCEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~G-i~~~Vv~P~~~~~~~~~k~~~~~~~GA~V 229 (465)
+.++|.. +|..|.+++..|+.+| .+++++.... .+...++.+|++-
T Consensus 169 ~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~~~------~~~~~~~~~g~~~ 215 (340)
T cd05284 169 STVVVIG-VGGLGHIAVQILRALTPATVIAVDRSE------EALKLAERLGADH 215 (340)
T ss_pred CEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeCCH------HHHHHHHHhCCcE
Confidence 3455544 6679999999999998 7766554321 2334567788743
No 308
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=26.81 E-value=94 Score=23.40 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 184 GAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 184 SsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
++|=.|.+.|+..++.|.+++|+=-.
T Consensus 3 GaG~sGl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 3 GAGISGLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp S-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eeCHHHHHHHHHHHHCCCcEEEEecC
Confidence 58899999999999999999888644
No 309
>PRK06924 short chain dehydrogenase; Provisional
Probab=26.81 E-value=4e+02 Score=24.80 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=25.6
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
.++|+.++|.-|.++|......|.+++++-.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeC
Confidence 4678888899999999998888998777654
No 310
>PRK07326 short chain dehydrogenase; Provisional
Probab=26.67 E-value=5e+02 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=26.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+.++|+.++|.-|.+++......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 45778888999999999998888999777653
No 311
>CHL00194 ycf39 Ycf39; Provisional
Probab=26.64 E-value=1.7e+02 Score=28.87 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=27.6
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
+++|+.++|..|..++......|.+++++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 36788999999999999988889998888754
No 312
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism]
Probab=26.46 E-value=35 Score=33.36 Aligned_cols=103 Identities=27% Similarity=0.424 Sum_probs=62.1
Q ss_pred eccCCCcccccc--------------cCCCCCCCCCCCCC----CccCCCCccccccch-----------hHHHHHHHHH
Q 012341 48 IARDPVVPMEAK--------------KESDPAPWQRPDVF----GRFGRFGGKFVPETL-----------MYALSELESA 98 (465)
Q Consensus 48 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~----~~~~~~gG~~~P~~~-----------~~~~~~i~~a 98 (465)
.+.+.+..|||+ +-++.-.|.+||+- --|-...|..+|-.. ..++++++++
T Consensus 130 ATdet~e~mplt~~lahkln~~l~~~rr~g~l~WlRpdsktqVTvey~~~~Ga~vP~rVhtvviS~QH~~~is~~~lr~~ 209 (383)
T KOG1506|consen 130 ATDETPECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQHSEDITLDDLRAE 209 (383)
T ss_pred ecCCCccccchHHHHHHHHHHHHHhhcccCcccccccCCcceEEEEEecCCCceeeeEEEEEEEecccCccccHHHHHHH
Confidence 345666777743 24666778899984 457789999999865 3467777766
Q ss_pred HHHhcCCchHHHHHHHHHhhhcCCCCCeEeccccchhhcCCCCCCCeEEEeeCCCCCCCCccHHHHHHHHHHHHHcCCCe
Q 012341 99 LHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTR 178 (465)
Q Consensus 99 ~~~~~~~~~~~~~l~~~i~~~vg~~TPL~~l~~Ls~~l~~~~~~g~~i~lK~E~~~pTGSfK~Rga~~~~~~a~~~g~~~ 178 (465)
..+ ++|+. +++..-|.+ ..|| .+||.|.|-+-|-...+- -.|++
T Consensus 210 l~e------------~vik~-------viPa~~lDe---------~Tiy----hl~PsGrFviGGP~GDAG---lTGRK- 253 (383)
T KOG1506|consen 210 LKE------------KVIKP-------VIPAKYLDE---------KTIY----HLNPSGRFVIGGPQGDAG---LTGRK- 253 (383)
T ss_pred HHH------------hhhhh-------cCcHhhcCc---------cceE----EecCCccEEecCCCcccc---cccce-
Confidence 642 34443 333333332 2466 479999988776543322 23444
Q ss_pred EEEEcCCC
Q 012341 179 IIAETGAG 186 (465)
Q Consensus 179 ~Vv~aSsG 186 (465)
+||.+-+|
T Consensus 254 IIvDtYGG 261 (383)
T KOG1506|consen 254 IIVDTYGG 261 (383)
T ss_pred EEEeccCc
Confidence 55554444
No 313
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=26.44 E-value=1.7e+02 Score=28.49 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=32.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
+.++|...+|..|.+++..|+.+|.++++..... .+...++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~v 195 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA------DAADYLKKLGAKEV 195 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH------HHHHHHHHcCCCEE
Confidence 3556666669999999999999999865554331 23445677887443
No 314
>PRK07856 short chain dehydrogenase; Provisional
Probab=26.36 E-value=5e+02 Score=24.24 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=26.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+.++|+.++|--|.++|......|.+++++..
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r 38 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGR 38 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 45678888889999999998888998777654
No 315
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=26.31 E-value=6.2e+02 Score=24.76 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeE----EEEEcCCChhhHHHhHHHHHhcCCEE-EEEc
Q 012341 163 NAVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQC----IVYMGAQDMERQALNVFRMRLLGAEV-RAVH 233 (465)
Q Consensus 163 ga~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~----~Vv~P~~~~~~~~~k~~~~~~~GA~V-~~v~ 233 (465)
++...+..+.+.|....+++..+.+.-.++...-+++|++. .|++-+....++ .++..+.. |-+| ..++
T Consensus 122 GA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~-~rr~~I~~-~y~Ivl~vG 195 (266)
T TIGR01533 122 GALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDKSSKE-SRRQKVQK-DYEIVLLFG 195 (266)
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCCCCcH-HHHHHHHh-cCCEEEEEC
Confidence 44555666667776655555544455555555577899975 566654332222 34444432 4454 4444
No 316
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=26.31 E-value=5.4e+02 Score=24.04 Aligned_cols=31 Identities=16% Similarity=-0.006 Sum_probs=25.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
.++|+.++|.-|.++|......|.+++++-.
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r 34 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADI 34 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 4788888899999999998888998777654
No 317
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=26.20 E-value=2.6e+02 Score=27.33 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=31.2
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.++|. ++|..|.+++..++.+|++++++.+.. .+...++.+|++.+.
T Consensus 165 ~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~~~ 211 (330)
T cd08245 165 RVAVL-GIGGLGHLAVQYARAMGFETVAITRSP------DKRELARKLGADEVV 211 (330)
T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCCH------HHHHHHHHhCCcEEe
Confidence 35554 577799998888999999876665432 133446677865443
No 318
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=26.09 E-value=2.4e+02 Score=28.00 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=30.7
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
..++| .+.|..|.+++..++.+|++++++.+.. .+...++.+|++-+
T Consensus 171 ~~vlV-~g~g~vG~~~~~~a~~~G~~v~~~~~~~------~~~~~~~~~g~~~v 217 (337)
T cd05283 171 KRVGV-VGIGGLGHLAVKFAKALGAEVTAFSRSP------SKKEDALKLGADEF 217 (337)
T ss_pred CEEEE-ECCcHHHHHHHHHHHHcCCeEEEEcCCH------HHHHHHHHcCCcEE
Confidence 34555 4578999999999999999765554331 13344566786543
No 319
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=25.98 E-value=2.3e+02 Score=28.02 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=30.0
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~ 228 (465)
.++|.. +|..|.++...++.+|++++++.... .+...++.+|++
T Consensus 168 ~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~------~~~~~~~~~g~~ 211 (345)
T cd08260 168 WVAVHG-CGGVGLSAVMIASALGARVIAVDIDD------DKLELARELGAV 211 (345)
T ss_pred EEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHhCCC
Confidence 445544 78999999999999999876665432 133445667873
No 320
>PRK09291 short chain dehydrogenase; Provisional
Probab=25.87 E-value=4.5e+02 Score=24.47 Aligned_cols=32 Identities=22% Similarity=0.171 Sum_probs=27.2
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
.++|+.++|.-|.+++......|.+++++...
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 47888999999999999988999988877654
No 321
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=25.81 E-value=78 Score=33.17 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=22.0
Q ss_pred EEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 181 AETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 181 v~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
|..++|-.|.+.|.+|++.|.++.++=+.
T Consensus 3 VVvGgG~aG~~AAi~AAr~G~~VlLiE~~ 31 (428)
T PF12831_consen 3 VVVGGGPAGVAAAIAAARAGAKVLLIEKG 31 (428)
T ss_dssp EEE--SHHHHHHHHHHHHTTS-EEEE-SS
T ss_pred EEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 34679999999999999999999998764
No 322
>PRK06484 short chain dehydrogenase; Validated
Probab=25.58 E-value=5.5e+02 Score=27.16 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=44.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVET 256 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~ 256 (465)
+.++|+.+++.-|.++|......|.+++++-... + .. ....+.+|.++..+..+-.+ .+...++++...++...
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~--~--~~-~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~~g~ 79 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNV--E--RA-RERADSLGPDHHALAMDVSD-EAQIREGFEQLHREFGR 79 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--H--HH-HHHHHHhCCceeEEEeccCC-HHHHHHHHHHHHHHhCC
Confidence 3567777777899999999888998876664321 1 11 12244457766555433222 33444555554443333
Q ss_pred ceEEec
Q 012341 257 THYILG 262 (465)
Q Consensus 257 ~~y~~~ 262 (465)
-..+++
T Consensus 80 iD~li~ 85 (520)
T PRK06484 80 IDVLVN 85 (520)
T ss_pred CCEEEE
Confidence 233443
No 323
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=25.52 E-value=2.5e+02 Score=27.51 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=30.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHc-CCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 178 RIIAETGAGQHGVATATVCARF-GLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~-Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.++|...+|..|.+++..|+.+ |.+++++.... .+...++.+|++-+
T Consensus 151 ~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~------~~~~~l~~~g~~~~ 198 (336)
T TIGR02817 151 ALLIIGGAGGVGSILIQLARQLTGLTVIATASRP------ESQEWVLELGAHHV 198 (336)
T ss_pred EEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcH------HHHHHHHHcCCCEE
Confidence 4555555788888888888887 88866654331 13344566787543
No 324
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=25.49 E-value=3.6e+02 Score=24.95 Aligned_cols=61 Identities=18% Similarity=0.103 Sum_probs=40.3
Q ss_pred HHHcCCCeEEEEcCCChHHHHH-HHHHHHcCCeEEEEEcCC---ChhhHHHhHHHHHhcCCEEEE
Q 012341 171 AKRLGKTRIIAETGAGQHGVAT-ATVCARFGLQCIVYMGAQ---DMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 171 a~~~g~~~~Vv~aSsGNhg~Al-A~aa~~~Gi~~~Vv~P~~---~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+++.|.+.+|++.-..|.++-. |.-|..+|++++|+-... +.+..+.-+..|+..+++|+-
T Consensus 137 Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~Da~as~~~~~h~~al~~l~~~~a~v~~ 201 (203)
T cd01013 137 LKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVADAIADFSLEEHRMALKYAATRCAMVVS 201 (203)
T ss_pred HHHcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEeccccCCCCHHHHHHHHHHHHhheeEeee
Confidence 4567778888887777876654 444888999988877542 222234455666667777753
No 325
>PF09094 DUF1925: Domain of unknown function (DUF1925); InterPro: IPR015178 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). It is adjacent to the C-terminal domain (see IPR015179 from INTERPRO). The exact function of this domain is, as yet, unknown. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=25.44 E-value=54 Score=26.00 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=11.8
Q ss_pred CCCCccccccchhHHHHHHH
Q 012341 77 GRFGGKFVPETLMYALSELE 96 (465)
Q Consensus 77 ~~~gG~~~P~~~~~~~~~i~ 96 (465)
|.|||+|.|.--...+..|.
T Consensus 55 G~FGGlYlp~LR~a~y~~LI 74 (80)
T PF09094_consen 55 GLFGGLYLPHLRHAAYRHLI 74 (80)
T ss_dssp SSS-GGG-HHHHHHHHHHHH
T ss_pred ccccceecHHHHHHHHHHHH
Confidence 99999999985444444333
No 326
>PLN02342 ornithine carbamoyltransferase
Probab=25.43 E-value=3e+02 Score=28.17 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCC-EEEEE
Q 012341 186 GQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGA-EVRAV 232 (465)
Q Consensus 186 GNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA-~V~~v 232 (465)
-|...+++.+++++|++++++-|+.-.. .+..+...+..|. ++...
T Consensus 204 ~nva~Sli~~~~~~G~~v~~~~P~~~~~-~~~~~~~a~~~g~~~~~~~ 250 (348)
T PLN02342 204 NNIVHSWLLLAAVLPFHFVCACPKGYEP-DAKTVEKARAAGISKIEIT 250 (348)
T ss_pred chhHHHHHHHHHHcCCEEEEECCccccc-CHHHHHHHHHhCCCcEEEE
Confidence 3799999999999999999999985321 1222334555674 66554
No 327
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=25.12 E-value=7.9e+02 Score=25.77 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.1
Q ss_pred EcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 182 ETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 182 ~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
.-++|-.|.+.|+.+++.|.+++++-..
T Consensus 7 IIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 7 VIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred EECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 3568999999999999999999998643
No 328
>PRK00509 argininosuccinate synthase; Provisional
Probab=25.11 E-value=8e+02 Score=25.62 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=34.7
Q ss_pred CeEEEEcCCC-hHHHHHHHHHHHcCCeEEEEEcCC-ChhhHHHhHHHHHhcCC-EEEEEc
Q 012341 177 TRIIAETGAG-QHGVATATVCARFGLQCIVYMGAQ-DMERQALNVFRMRLLGA-EVRAVH 233 (465)
Q Consensus 177 ~~~Vv~aSsG-Nhg~AlA~aa~~~Gi~~~Vv~P~~-~~~~~~~k~~~~~~~GA-~V~~v~ 233 (465)
+++++..|+| +....+.++...+|.+++.|.=.. .....+.-....+.+|+ +.+.++
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD 62 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQGEELEPIREKALKSGASEIYVED 62 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 4578889888 566666666565698877766432 11112222345788998 566554
No 329
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=25.03 E-value=4.3e+02 Score=22.44 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=47.8
Q ss_pred HHHHHHcCCeEEEEEcC-CChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCCCch
Q 012341 193 ATVCARFGLQCIVYMGA-QDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYP 271 (465)
Q Consensus 193 A~aa~~~Gi~~~Vv~P~-~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~p~~ 271 (465)
+...+..+.+..|++-. ... ..........+.+++.= ...++.+.+..+++.. .+......++++- -|.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~Q--~g~dLG~Rm~~a~~~~-~~g~~~vvliGsD---~P~- 72 (122)
T PF09837_consen 3 AALAQADGADVVLAYTPDGDH---AAFRQLWLPSGFSFFPQ--QGGDLGERMANAFQQA-ARGYEPVVLIGSD---CPD- 72 (122)
T ss_dssp -----TSSSEEEEEE----TT---HHHHHHHH-TTSEEEE----SSSHHHHHHHHHHHH-HTT-SEEEEE-SS----TT-
T ss_pred cccccCCCcCEEEEEcCCccH---HHHhccccCCCCEEeec--CCCCHHHHHHHHHHHH-HcCCCcEEEEcCC---CCC-
Confidence 44566778888887743 221 11111133444555443 3368999888888876 3333455565543 332
Q ss_pred hHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCch
Q 012341 272 MMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGS 308 (465)
Q Consensus 272 ~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~GG 308 (465)
+-.+.+.|..+.+. ..|+|+.|+-=||
T Consensus 73 ---------l~~~~l~~A~~~L~-~~d~VlgPa~DGG 99 (122)
T PF09837_consen 73 ---------LTPDDLEQAFEALQ-RHDVVLGPAEDGG 99 (122)
T ss_dssp -----------HHHHHHHHHHTT-T-SEEEEEBTTSS
T ss_pred ---------CCHHHHHHHHHHhc-cCCEEEeeccCCC
Confidence 11334455556664 5699999998776
No 330
>PRK12747 short chain dehydrogenase; Provisional
Probab=24.87 E-value=5.7e+02 Score=23.80 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=34.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~ 233 (465)
+..+|+.++|--|.++|......|.+++++..... +........++..|.++..+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 60 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRK-EEAEETVYEIQSNGGSAFSIG 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCH-HHHHHHHHHHHhcCCceEEEe
Confidence 35678888888999999998889988776532211 111222234555566655544
No 331
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=24.83 E-value=2.6e+02 Score=27.87 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=31.6
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.++|. ++|..|.+++..|+.+|...++.+... +.+....+.+|++.+
T Consensus 169 ~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~ 215 (351)
T cd08285 169 TVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR-----PNRVELAKEYGATDI 215 (351)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCceE
Confidence 44554 678999999999999999755554332 124455777887533
No 332
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=24.83 E-value=3.7e+02 Score=27.51 Aligned_cols=30 Identities=23% Similarity=0.218 Sum_probs=25.4
Q ss_pred EEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 180 IAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 180 Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
|+.-++|..|.-+|...+.+|.+++++.+.
T Consensus 147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 147 VVIVGAGTIGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 334568999999999999999999998864
No 333
>PRK10490 sensor protein KdpD; Provisional
Probab=24.70 E-value=9e+02 Score=28.10 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=58.3
Q ss_pred CeEEEEcCCChHHH----HHHHHHHHcCCeEEEEEcCC------Ch-hh--HHHhHHHHHhcCCEEEEEcCCCCCHHHHH
Q 012341 177 TRIIAETGAGQHGV----ATATVCARFGLQCIVYMGAQ------DM-ER--QALNVFRMRLLGAEVRAVHSGTATLKDAT 243 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~----AlA~aa~~~Gi~~~Vv~P~~------~~-~~--~~~k~~~~~~~GA~V~~v~~~~~~~~da~ 243 (465)
.+++|+-|++-++. ..+-.|.+++-+.+++.=+. +. .+ ...++++.+.+||+++.+.+ ++..+.
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~--~dva~~- 327 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSD--PAEEKA- 327 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeC--CCHHHH-
Confidence 44566665554442 23344667888877655221 11 11 12345677889999888875 233333
Q ss_pred HHHHHHHHHccCCceEEeccCCCCCCchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCC
Q 012341 244 SEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVG 305 (465)
Q Consensus 244 ~~a~~~~~~~~~~~~y~~~s~~~~~p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG 305 (465)
+-++.....-+..+++.... +++ + .. ..+..++.+.. +.+|..||+..
T Consensus 328 ---i~~~A~~~~vt~IViG~s~~-~~~--~---~~----~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 ---VLRYAREHNLGKIIIGRRAS-RRW--W---RR----ESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred ---HHHHHHHhCCCEEEECCCCC-CCC--c---cC----CCHHHHHHHhC-CCCCEEEEeCC
Confidence 33344444445666765432 111 0 01 12334555555 46888888643
No 334
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=24.68 E-value=2.7e+02 Score=30.24 Aligned_cols=53 Identities=26% Similarity=0.358 Sum_probs=37.4
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCC---------------ChhhHHHhHHHHHhcCCEEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQ---------------DMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~---------------~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.|+.-++|-.|.++|+.+++.|.+++|+=... ..+....++..++.+|+++..
T Consensus 139 ~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 45567799999999999999999977763211 001133456678889998765
No 335
>PRK07102 short chain dehydrogenase; Provisional
Probab=24.47 E-value=5.5e+02 Score=23.74 Aligned_cols=56 Identities=14% Similarity=0.021 Sum_probs=35.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHH-hcCCEEEEEcCC
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR-LLGAEVRAVHSG 235 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~-~~GA~V~~v~~~ 235 (465)
.++|+.++|.-|.+++......|.+++++..... ..+.....++ ..+.++..+..+
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D 59 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVE--RLERLADDLRARGAVAVSTHELD 59 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHHHHHHHHhcCCeEEEEecC
Confidence 4678888899999999998888998777764421 1111122222 235576666543
No 336
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=24.37 E-value=2.3e+02 Score=27.14 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=33.4
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhc-CCEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLL-GAEVR 230 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~-GA~V~ 230 (465)
.|+.-++|+.|.-+|...+..+.+++++.+.......+.-...++.. |.+++
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~ 195 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFL 195 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEE
Confidence 34456799999999999888899999988753221111222334444 65554
No 337
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=24.18 E-value=3.6e+02 Score=26.91 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=35.5
Q ss_pred EEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHH----HHhcCCEEEEEc
Q 012341 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFR----MRLLGAEVRAVH 233 (465)
Q Consensus 180 Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~----~~~~GA~V~~v~ 233 (465)
.+..-..|...+++.+++++|++++++.|+...... ..+.. .+..|+++....
T Consensus 152 ~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 152 VYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDA-DIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred EEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCH-HHHHHHHHHHHHcCCeEEEEc
Confidence 333333589999999999999999999998532111 11112 355788887663
No 338
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=24.14 E-value=4.7e+02 Score=26.27 Aligned_cols=49 Identities=22% Similarity=0.208 Sum_probs=32.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
+.++|. ++|.-|.+++..|+.+|.+.++..... +.|...++.+|++.+.
T Consensus 188 ~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~~-----~~k~~~~~~~g~~~~i 236 (365)
T cd08278 188 SSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDIV-----DSRLELAKELGATHVI 236 (365)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHcCCcEEe
Confidence 334554 678999999999999999755544332 2345567888986443
No 339
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.05 E-value=6.1e+02 Score=23.84 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=23.5
Q ss_pred eEEEEcCC--ChHHHHHHHHHHHcCCeEEEEEc
Q 012341 178 RIIAETGA--GQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 178 ~~Vv~aSs--GNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
..+|+.++ +.-|.++|....+.|.++++...
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 45666665 57899999998889998776643
No 340
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=23.96 E-value=2.3e+02 Score=27.59 Aligned_cols=48 Identities=23% Similarity=0.329 Sum_probs=34.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
..++|...+|..|.+++..|+.+|.+++++... +.|...++.+|++-+
T Consensus 148 ~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~------~~~~~~~~~~g~~~~ 195 (324)
T cd08288 148 GPVLVTGAAGGVGSVAVALLARLGYEVVASTGR------PEEADYLRSLGASEI 195 (324)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC------HHHHHHHHhcCCCEE
Confidence 345665656999999999999999986665432 124455788998543
No 341
>PRK07825 short chain dehydrogenase; Provisional
Probab=23.68 E-value=6.3e+02 Score=23.88 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=25.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+.++|+.++|.-|.++|......|.+++++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r 37 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDL 37 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 35788888899999999988888998766543
No 342
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=23.67 E-value=3e+02 Score=26.90 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=29.9
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~ 228 (465)
.++|. ++|..|.+++..|+.+|.+++++--... ..+...++.+|++
T Consensus 167 ~vlI~-g~g~~g~~~~~la~~~G~~v~~~~~~~~----~~~~~~~~~~g~~ 212 (306)
T cd08258 167 TVVVF-GPGPIGLLAAQVAKLQGATVVVVGTEKD----EVRLDVAKELGAD 212 (306)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCEEEEECCCCC----HHHHHHHHHhCCc
Confidence 45554 5788999999999999998544312222 2244557778863
No 343
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=23.35 E-value=7.2e+02 Score=24.43 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=39.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcC-CeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFG-LQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVT 252 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~G-i~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~ 252 (465)
+.++|+.+++--|.++|......| .+++++.... ++.+.-...+...+.++..+..+-.+. +.+..++++..+
T Consensus 4 k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~-~~v~~~~~~~~~ 77 (314)
T TIGR01289 4 PTVIITGASSGLGLYAAKALAATGEWHVIMACRDF--LKAEQAAKSLGMPKDSYTIMHLDLGSL-DSVRQFVQQFRE 77 (314)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHHHHHHHHHH
Confidence 346777777778888888877889 8777765432 111111122333455565554332233 334444444433
No 344
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=23.08 E-value=3.3e+02 Score=26.46 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=31.2
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~ 228 (465)
..++|...+|..|.+++..++..|.+++++.... + +...++.+|++
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~--~----~~~~~~~~~~~ 209 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP--E----KLKILKELGAD 209 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH--H----HHHHHHHcCCc
Confidence 3456667678999999999999999876665321 1 22335666764
No 345
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=23.01 E-value=1.1e+02 Score=30.19 Aligned_cols=29 Identities=34% Similarity=0.446 Sum_probs=23.6
Q ss_pred EEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 181 AETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 181 v~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
+..++|=.|.++|.+.++.|++++|+=..
T Consensus 5 ~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 5 AIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEECCCHHHHHHHHHHHhcccccccchhc
Confidence 34679999999999999999999998754
No 346
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=23.00 E-value=3e+02 Score=29.03 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=23.7
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVY 206 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv 206 (465)
+.|+..+.|+-|..+|..++.+|.+++++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~ 241 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVT 241 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 34556789999999999999999985554
No 347
>PRK00768 nadE NAD synthetase; Reviewed
Probab=22.95 E-value=5.6e+02 Score=25.21 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=37.0
Q ss_pred HHHHcCCCeEEEEcCCC-hHHHHHHHHHHHc---CC--------eEEEEEcCCChhhHHHhHHHHHhcCC-EEEEEc
Q 012341 170 LAKRLGKTRIIAETGAG-QHGVATATVCARF---GL--------QCIVYMGAQDMERQALNVFRMRLLGA-EVRAVH 233 (465)
Q Consensus 170 ~a~~~g~~~~Vv~aSsG-Nhg~AlA~aa~~~---Gi--------~~~Vv~P~~~~~~~~~k~~~~~~~GA-~V~~v~ 233 (465)
...+.+....|+--|+| +.+..++.+...+ +. -+.+.||..............+.+|. +...++
T Consensus 32 ~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~~~~i~ 108 (268)
T PRK00768 32 YLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDRVLTVN 108 (268)
T ss_pred HHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCeeEEEE
Confidence 44556777777777777 5665555443333 31 24567785432212333456888998 676665
No 348
>PRK07774 short chain dehydrogenase; Provisional
Probab=22.73 E-value=6.1e+02 Score=23.41 Aligned_cols=33 Identities=30% Similarity=0.187 Sum_probs=27.0
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
+.++|+.++|--|.++|......|.+++++...
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 347888888999999999988899988777543
No 349
>PRK06260 threonine synthase; Validated
Probab=22.72 E-value=8.6e+02 Score=25.09 Aligned_cols=36 Identities=8% Similarity=-0.045 Sum_probs=25.8
Q ss_pred CCeEEEEcCCChHHHHHHHHHHHcC--------CeEEEEEcCCC
Q 012341 176 KTRIIAETGAGQHGVATATVCARFG--------LQCIVYMGAQD 211 (465)
Q Consensus 176 ~~~~Vv~aSsGNhg~AlA~aa~~~G--------i~~~Vv~P~~~ 211 (465)
.+.+|+..++|-+..+++.+-+.+. .+++.+-|.+.
T Consensus 218 pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~ 261 (397)
T PRK06260 218 PDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGA 261 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCC
Confidence 5777887888877777777765543 47777888754
No 350
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=22.59 E-value=2.7e+02 Score=28.29 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=29.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCe-EEEEEcCCChhhHHHhHHHHHhcCCE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAE 228 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~-~~Vv~P~~~~~~~~~k~~~~~~~GA~ 228 (465)
.++|. ++|.-|.+++..++.+|.+ ++++-+. +.+...++.+|++
T Consensus 193 ~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~~------~~~~~~a~~lGa~ 237 (373)
T cd08299 193 TCAVF-GLGGVGLSAIMGCKAAGASRIIAVDIN------KDKFAKAKELGAT 237 (373)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcCC------HHHHHHHHHcCCc
Confidence 34444 6789999999999999984 5444322 1244456778884
No 351
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=22.57 E-value=2.9e+02 Score=26.72 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=30.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~ 228 (465)
..++|...+|..|.+++..++.+|.+++++.+... +...++.+|++
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~------~~~~~~~~g~~ 189 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPA------KTALVRALGAD 189 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHH------HHHHHHHcCCC
Confidence 44566666789999999999999988655543311 22335667764
No 352
>PLN02827 Alcohol dehydrogenase-like
Probab=22.46 E-value=3.4e+02 Score=27.62 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=31.2
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEE
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~ 230 (465)
.|+..++|--|.+++..|+.+|.+.++..... +.|...++.+|++-+
T Consensus 196 ~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~-----~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 196 SVVIFGLGTVGLSVAQGAKLRGASQIIGVDIN-----PEKAEKAKTFGVTDF 242 (378)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCcEE
Confidence 34344678899998888999998655554322 124556788898643
No 353
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=22.40 E-value=5.2e+02 Score=25.29 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=31.9
Q ss_pred CeEEEEcCCChHHHHHHHHHHH-cCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCAR-FGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~-~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
..++|.. +|--|.+++..++. .|.+++++.+.. .+...++.+|++.+.
T Consensus 164 ~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~~~------~~~~~~~~~g~~~v~ 212 (338)
T PRK09422 164 QWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDIND------DKLALAKEVGADLTI 212 (338)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeCCh------HHHHHHHHcCCcEEe
Confidence 3455554 78888888888887 499865554332 245557889986553
No 354
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=22.30 E-value=1.4e+02 Score=27.20 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=23.5
Q ss_pred EcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 182 ETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 182 ~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
.-++|..|.++|..+...|++++++=+.
T Consensus 4 ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 4 VIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 3578999999999999999999999876
No 355
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.27 E-value=2.8e+02 Score=29.23 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=35.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC------CChhhHHHhHHHHHhcCCEEEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA------QDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~------~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
++++ .-++|..|.-+|...+.+|.+++++... .+.+....-.+.++..|.+|+.
T Consensus 173 ~~vv-VIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~ 232 (466)
T PRK07818 173 KSIV-IAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILT 232 (466)
T ss_pred CeEE-EECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEE
Confidence 3444 4678999999999999999999987532 2222222223446667776653
No 356
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=22.19 E-value=3.1e+02 Score=26.79 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=31.1
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEV 229 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V 229 (465)
+.++|...+|-.|.+++..++.+|.+++++.... .+...++.+|++-
T Consensus 141 ~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~------~~~~~~~~~g~~~ 187 (329)
T cd08250 141 ETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSD------EKAEFLKSLGCDR 187 (329)
T ss_pred CEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcH------HHHHHHHHcCCce
Confidence 3456666678899999999999999866554321 1233456677643
No 357
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=22.10 E-value=4.4e+02 Score=26.88 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcC
Q 012341 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234 (465)
Q Consensus 175 g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~ 234 (465)
++...|+..+.|-.|......|+.+|.+++.+--. +.|.+..+.+||+.+....
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~------~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS------EEKLELAKKLGADHVINSS 218 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC------hHHHHHHHHhCCcEEEEcC
Confidence 33445666778877777777789999777776533 3467779999999887643
No 358
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=22.09 E-value=68 Score=31.25 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCEEEEcCCCchhHHHHhHHhhcCCCcEEEEEecCCCC
Q 012341 297 PDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFG 334 (465)
Q Consensus 297 ~D~vvvpvG~GG~~aGi~~~~~~~p~~rvigVe~~~~~ 334 (465)
.|+|||..|.||.+.+- .+...+..+|..+|.-...
T Consensus 1 yD~iIVGsG~~G~v~A~--rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVAS--RLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHH--HHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHH--HHhhCCCCcEEEEEccccC
Confidence 48999988877655332 2225667899999977653
No 359
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=21.87 E-value=4.7e+02 Score=26.99 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=26.3
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
++++| -++|..|..+|...++.|.+++++.+.
T Consensus 138 ~~vvV-iGgG~~g~e~A~~l~~~g~~Vtli~~~ 169 (427)
T TIGR03385 138 ENVVI-IGGGYIGIEMAEALRERGKNVTLIHRS 169 (427)
T ss_pred CeEEE-ECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 34444 578999999999999999999998865
No 360
>PRK12746 short chain dehydrogenase; Provisional
Probab=21.85 E-value=6.5e+02 Score=23.36 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=41.6
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHH
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDW 250 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~ 250 (465)
+.++|+.++|--|.++|....+.|.+++++..... +........+...+.++..+..+-.+ .+...++++..
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~-~~~~~~~~~~~~~~~~~~~~~~D~~d-~~~i~~~~~~~ 78 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNK-QAADETIREIESNGGKAFLIEADLNS-IDGVKKLVEQL 78 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHHHHHHhcCCcEEEEEcCcCC-HHHHHHHHHHH
Confidence 45788888999999999998888988777643322 11111222344446666655543223 23333444443
No 361
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=21.66 E-value=1.1e+02 Score=31.51 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=22.8
Q ss_pred EcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 182 ETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 182 ~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
.-++|..|.+.|..++..|.+++|+=..
T Consensus 4 VIG~G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 4 VIGGGLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp EE-SSHHHHHHHHHHHHTTT-EEEEESS
T ss_pred EECCCHHHHHHHHHHhhhcCeEEEEEee
Confidence 3569999999999999999998888754
No 362
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=21.48 E-value=1.1e+02 Score=26.80 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=25.0
Q ss_pred EEcCCChHHHHHHHHHHHcCCeEEEEEcCC
Q 012341 181 AETGAGQHGVATATVCARFGLQCIVYMGAQ 210 (465)
Q Consensus 181 v~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~ 210 (465)
+..++|.-+.+++..++.+|++++++=|..
T Consensus 2 ~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 2 VIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred EEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 346799999999999999999999998873
No 363
>PLN02702 L-idonate 5-dehydrogenase
Probab=21.42 E-value=3.9e+02 Score=26.80 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=33.1
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRA 231 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~ 231 (465)
.++|. ++|.-|.++...++.+|.+.++..... ..|...++.+|++...
T Consensus 184 ~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 184 NVLVM-GAGPIGLVTMLAARAFGAPRIVIVDVD-----DERLSVAKQLGADEIV 231 (364)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEE
Confidence 34554 678899998889999999865555432 2345567888987554
No 364
>PLN02583 cinnamoyl-CoA reductase
Probab=21.36 E-value=5.8e+02 Score=24.81 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=28.5
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
+.++|+.++|--|.+++......|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 457888989999999999988999999888754
No 365
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=21.30 E-value=1.6e+02 Score=26.10 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=20.2
Q ss_pred EEEEcCCCh-----HHHHHHHHHHHcCCeEEEEEc
Q 012341 179 IIAETGAGQ-----HGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 179 ~Vv~aSsGN-----hg~AlA~aa~~~Gi~~~Vv~P 208 (465)
..+..+||+ ++.-+|..|+..|.+++|+.-
T Consensus 5 l~ii~~sg~~Dk~~~~lilA~~Aaa~G~eV~iFfT 39 (148)
T PF13686_consen 5 LAIIVFSGTLDKAYPALILASGAAAMGMEVTIFFT 39 (148)
T ss_dssp EEEEE---SHHHHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 334456784 778889999999999999994
No 366
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.19 E-value=1.7e+02 Score=30.80 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=26.3
Q ss_pred EEEEcCCChHHHHHHHHHHHc---CCeEEEEEcCCC
Q 012341 179 IIAETGAGQHGVATATVCARF---GLQCIVYMGAQD 211 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~---Gi~~~Vv~P~~~ 211 (465)
++|.++.||+|.+-..++|++ |+..+|++|..+
T Consensus 269 V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~pk~s 304 (453)
T KOG2585|consen 269 VAILCGPGNNGGDGLVCGRHLAQHGYTPVIYYPKRS 304 (453)
T ss_pred EEEEeCCCCccchhHHHHHHHHHcCceeEEEeecCc
Confidence 777889998777766666654 999999999854
No 367
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=21.18 E-value=2.2e+02 Score=26.45 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCCCEEEEcCCCchhHHHHhHHhhcCCCcEEEEEecCC
Q 012341 283 KETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAG 332 (465)
Q Consensus 283 ~e~~~qi~e~~g~~~D~vvvpvG~GG~~aGi~~~~~~~p~~rvigVe~~~ 332 (465)
.|+.......+...++-++.-+|.|+...++-.+ ...|..|+|++|...
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~ 68 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDE 68 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCH
Confidence 5555555666777788788888888777777544 457999999999754
No 368
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.12 E-value=6.4e+02 Score=22.99 Aligned_cols=99 Identities=9% Similarity=-0.028 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHccCCceEEeccCCCCC
Q 012341 189 GVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPH 268 (465)
Q Consensus 189 g~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~~~~~y~~~s~~~~~ 268 (465)
|..+.++++.+|.+..--++..+ --..-+......|..|.++++. .+..+.+.+.+.++.++- -+.+. +
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~d--l~~~l~~~~~~~~~~vfllG~~----~~v~~~~~~~l~~~yP~l-~i~g~----~ 81 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPD--LMEELCQRAGKEKLPIFLYGGK----PDVLQQLKVKLIKEYPKL-KIVGA----F 81 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHH--HHHHHHHHHHHcCCeEEEECCC----HHHHHHHHHHHHHHCCCC-EEEEE----C
Confidence 46788899999876432333211 1112233355677899999754 233334444444444332 22222 2
Q ss_pred CchhHHhhHHHHHHHHHHHHHHHHhCCCCCEEEEcCCCc
Q 012341 269 PYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGG 307 (465)
Q Consensus 269 p~~~~v~~~~~~~g~e~~~qi~e~~g~~~D~vvvpvG~G 307 (465)
+|-. .-.. .++..+|.+ . .+|.|+|+.|.=
T Consensus 82 g~f~---~~~~---~~i~~~I~~-s--~~dil~VglG~P 111 (177)
T TIGR00696 82 GPLE---PEER---KAALAKIAR-S--GAGIVFVGLGCP 111 (177)
T ss_pred CCCC---hHHH---HHHHHHHHH-c--CCCEEEEEcCCc
Confidence 3210 1111 334455543 3 589999988874
No 369
>PRK09126 hypothetical protein; Provisional
Probab=20.95 E-value=1.1e+02 Score=31.11 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.2
Q ss_pred EEcCCChHHHHHHHHHHHcCCeEEEEEc
Q 012341 181 AETGAGQHGVATATVCARFGLQCIVYMG 208 (465)
Q Consensus 181 v~aSsGNhg~AlA~aa~~~Gi~~~Vv~P 208 (465)
+..++|-.|.++|.+.++.|++++|+=.
T Consensus 7 iIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 7 VVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred EEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 3467999999999999999999988853
No 370
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=20.80 E-value=9.4e+02 Score=25.67 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCChHHHHHHHHHHHcCCeEEEEEcC
Q 012341 164 AVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGA 209 (465)
Q Consensus 164 a~~~~~~a~~~g~~~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~ 209 (465)
+...+..+...+.+.+|+-+.||+++..+|.. +-..+++++.|.
T Consensus 362 a~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~--rp~~PIiAvT~~ 405 (473)
T TIGR01064 362 ALSAVEAAEKLDAKAIVVLTESGRTARLLSKY--RPNAPIIAVTPN 405 (473)
T ss_pred HHHHHHHHhhcCCCEEEEEcCChHHHHHHHhh--CCCCCEEEEcCC
Confidence 33344445555555556556667666665554 445666666655
No 371
>PRK07831 short chain dehydrogenase; Provisional
Probab=20.60 E-value=7.1e+02 Score=23.34 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=23.4
Q ss_pred CeEEEEcCCC-hHHHHHHHHHHHcCCeEEEEE
Q 012341 177 TRIIAETGAG-QHGVATATVCARFGLQCIVYM 207 (465)
Q Consensus 177 ~~~Vv~aSsG-Nhg~AlA~aa~~~Gi~~~Vv~ 207 (465)
+.++|+.++| .-|.++|......|.+++++-
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~ 49 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISD 49 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEe
Confidence 3467777666 689999999888999865543
No 372
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=20.56 E-value=3.1e+02 Score=26.44 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=29.4
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCCe-EEEEEcCCChhhHHHhHHHHHhcCCE
Q 012341 177 TRIIAETGAGQHGVATATVCARFGLQ-CIVYMGAQDMERQALNVFRMRLLGAE 228 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi~-~~Vv~P~~~~~~~~~k~~~~~~~GA~ 228 (465)
..++|. ++|-.|.+++..|+.+|.+ ++++-.. . .+...++.+|++
T Consensus 131 ~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~~~~--~----~~~~~~~~~g~~ 176 (312)
T cd08269 131 KTVAVI-GAGFIGLLFLQLAAAAGARRVIAIDRR--P----ARLALARELGAT 176 (312)
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECCC--H----HHHHHHHHhCCc
Confidence 345555 5788999999999999998 5443222 1 233456778874
No 373
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=20.55 E-value=2.9e+02 Score=27.85 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=30.3
Q ss_pred eEEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCChhhHHHhHHHHHhcCCE
Q 012341 178 RIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE 228 (465)
Q Consensus 178 ~~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~~~~~~~k~~~~~~~GA~ 228 (465)
.++|. ++|..|.+++..++.+|.+.++..... +.+...++.+|++
T Consensus 186 ~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~~-----~~~~~~~~~~g~~ 230 (365)
T cd05279 186 TCAVF-GLGGVGLSVIMGCKAAGASRIIAVDIN-----KDKFEKAKQLGAT 230 (365)
T ss_pred EEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC-----HHHHHHHHHhCCC
Confidence 44554 678999999999999998755554321 1244456778874
No 374
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=20.45 E-value=2.1e+02 Score=25.89 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=27.3
Q ss_pred EEEEcCCChHHHHHHHHHHHcCCeEEEEEcCCC
Q 012341 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQD 211 (465)
Q Consensus 179 ~Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~P~~~ 211 (465)
+|..-+.|+-|+++|..++.+|++++++=|...
T Consensus 38 tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 38 TVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred EEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 455568999999999999999999999988754
No 375
>PRK06847 hypothetical protein; Provisional
Probab=20.43 E-value=1.4e+02 Score=30.08 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.1
Q ss_pred EEEcCCChHHHHHHHHHHHcCCeEEEEE
Q 012341 180 IAETGAGQHGVATATVCARFGLQCIVYM 207 (465)
Q Consensus 180 Vv~aSsGNhg~AlA~aa~~~Gi~~~Vv~ 207 (465)
|+.-++|-.|.++|...++.|++++|+=
T Consensus 7 V~IVGaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 7 VLIVGGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 3345799999999999999999998884
No 376
>PRK08264 short chain dehydrogenase; Validated
Probab=20.40 E-value=5.2e+02 Score=23.77 Aligned_cols=33 Identities=9% Similarity=-0.020 Sum_probs=26.8
Q ss_pred CeEEEEcCCChHHHHHHHHHHHcCC-eEEEEEcC
Q 012341 177 TRIIAETGAGQHGVATATVCARFGL-QCIVYMGA 209 (465)
Q Consensus 177 ~~~Vv~aSsGNhg~AlA~aa~~~Gi-~~~Vv~P~ 209 (465)
+.++|+.++|.-|.++|......|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4578888899999999999889998 76666543
No 377
>PHA02554 13 neck protein; Provisional
Probab=20.40 E-value=1.3e+02 Score=29.92 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=32.8
Q ss_pred hHHHhHHHHHhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcc
Q 012341 214 RQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNV 254 (465)
Q Consensus 214 ~~~~k~~~~~~~GA~V~~v~~~~~~~~da~~~a~~~~~~~~ 254 (465)
+++.|-.-+|.|||-|+.++...+-..|+++++++.+.+..
T Consensus 8 p~eLkD~iLRrLGAPii~Ievt~dQi~D~I~rALely~EYH 48 (311)
T PHA02554 8 PRELKDYILRRLGAPIINVEVTEDQIYDCIQRALELYGEYH 48 (311)
T ss_pred HHHHHHHHHHhcCCCeeEeecCHHHHHHHHHHHHHHHHHHh
Confidence 36778888999999999998776667889988888765543
No 378
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=20.02 E-value=2.1e+02 Score=30.36 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=24.2
Q ss_pred CEEEEcCCCchhHHHHhHHhh-cCCCcEEEEEecCC
Q 012341 298 DVLIACVGGGSNAMGLFHEFV-NDKDVRLIGVEAAG 332 (465)
Q Consensus 298 D~vvvpvG~GG~~aGi~~~~~-~~p~~rvigVe~~~ 332 (465)
-+++|.+|+|-+..-.+.+.. .....+|++||...
T Consensus 189 vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 189 VVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred EEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 467788888887765555543 45789999999654
Done!