RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012341
(465 letters)
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 395 bits (1016), Expect = e-136
Identities = 238/388 (61%), Positives = 295/388 (76%), Gaps = 5/388 (1%)
Query: 76 FGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLTEH 135
FG FGG++VPETL+ L ELE A + DD +F +L+ L+ + GR TPLY+A+RLTE
Sbjct: 3 FGEFGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEK 62
Query: 136 YRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATATV 195
GG IYLKREDL H GAHK NNA+GQALLAK +GKTR+IAETGAGQHGVATA
Sbjct: 63 I-----GGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMA 117
Query: 196 CARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVE 255
A G++ +YMGA+D+ERQ +NVFRM+LLGA V V+SG+ TLKDA +EA+RDWV E
Sbjct: 118 GALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFE 177
Query: 256 TTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFH 315
THY++GSV GPHPYP +VRDF +VIG+E + Q LE G PDV++ACVGGGSNAMG+F+
Sbjct: 178 YTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFY 237
Query: 316 EFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSISA 375
FVNDK V+L+GVEA G GL+SGKH+A+L+ G+VGV HG LSY LQ+E+GQI HSI+
Sbjct: 238 PFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAP 297
Query: 376 GLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLC 435
GLDYPGVGPEH++LK RAEY VTD+EAL+AF SR EGIIPALE+AHA+AY KL
Sbjct: 298 GLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLA 357
Query: 436 PTLADGTKVVVNFSGRGDKDVQTAIKYL 463
++ ++VN SGRGDKD+ +K
Sbjct: 358 KEMSRDEIIIVNLSGRGDKDLDIVLKVS 385
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 392 bits (1007), Expect = e-135
Identities = 215/391 (54%), Positives = 279/391 (71%), Gaps = 7/391 (1%)
Query: 74 GRFGRFGGKFVPETLMYALSELESALHKLADDRDFQEELSGILRDYVGRETPLYFAERLT 133
FG FGG +VP+ LM AL++LE A D +FQ + + +L++Y GR T L + +T
Sbjct: 6 PYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNIT 65
Query: 134 EHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAETGAGQHGVATA 193
+YLKREDL H GAHK N +GQALLAKR+GK+ IIAETGAGQHGVA+A
Sbjct: 66 AGT------RTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASA 119
Query: 194 TVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTN 253
A GL+C +YMGA+D+ERQ+ NVFRMRL+GAEV VHSG+ATLKDA +EA+RDW +
Sbjct: 120 LASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGS 179
Query: 254 VETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGL 313
ET HY+LG+ AGPHPYP +VR+F +IG+ET+ Q L+K G PD +IACVGGGSNA+G+
Sbjct: 180 YETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGM 239
Query: 314 FHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNEDGQIIEPHSI 373
F +F+ND V LIGVE G G+++G+H A L G VG+ G + ++Q DGQI E +SI
Sbjct: 240 FADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSI 299
Query: 374 SAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEK 433
SAGLD+P VGP+H++L GRA+Y ++TDDEALEAFK R EGIIPALE++HALA+ K
Sbjct: 300 SAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALK 359
Query: 434 LCPTLADGTK-VVVNFSGRGDKDVQTAIKYL 463
+ + + +VVN SGRGDKD+ T L
Sbjct: 360 MMREQPEKEQLLVVNLSGRGDKDIFTVHDIL 390
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 152 bits (385), Expect = 2e-43
Identities = 58/342 (16%), Positives = 108/342 (31%), Gaps = 58/342 (16%)
Query: 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRL 174
++ +G TP+ + + I+LK E N G+ K A+ L A++
Sbjct: 3 MMERLIGS-TPIVRLDSI----------DSRIFLKLEKNNPGGSVKDRPALFMILDAEKR 51
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
G + + + ++ + M + +++LGAE+
Sbjct: 52 GLLKNGIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVE--RRKVLKMLGAEL----- 104
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG 294
L +E + + P V G E ++
Sbjct: 105 ---VLTPGELGMKGAVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPEIL----KQMD 157
Query: 295 GKPDVLIACVGGGSNAMGLFHEF--VNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352
+ D +A VG G G+ V+++ VE A + LS G+ G
Sbjct: 158 YQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAK--------SPVLSGGQPG-- 207
Query: 353 HGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRS 412
H+I G+ G G L E V D+EA E +
Sbjct: 208 -----------------KHAIQ-GI---GAGFVPKILDRSVIDEVITVEDEEAYEMARYL 246
Query: 413 SRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDK 454
++ EG++ + + +A K+ L +VV ++
Sbjct: 247 AKKEGLLVGISSGANVAAALKVAQKLGPDARVVTVAPDHAER 288
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 150 bits (378), Expect = 6e-42
Identities = 67/346 (19%), Positives = 120/346 (34%), Gaps = 47/346 (13%)
Query: 119 YVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL---AKRLG 175
TP+ RL++H GG H+Y KRED N A N L A G
Sbjct: 11 LTFGPTPIQPLARLSKHL----GGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQG 66
Query: 176 KTRIIAETGA-GQHGVATATVCARFGLQCIVYMGA-----QDMERQALNVFRMRLLGAEV 229
+++ G A V A G++C++ + + N+ R+LGA+V
Sbjct: 67 CDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADV 126
Query: 230 RAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQA 289
R V G + E + V Y + + HP + E R
Sbjct: 127 RLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGF----AEEVRAQ 182
Query: 290 LEKWGGKPDVLIACVGGGSNAMGLFHEFVND-KDVRLIGVEAAGFGLDSGKHAATLSKGE 348
+ G K D ++ C GS G+ F D + R+IGV+A+ + + +++
Sbjct: 183 EAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIARQT 242
Query: 349 VGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 408
+ + L + Y + ++ LEA
Sbjct: 243 AEKVGL------------------------ERDIMRADVVLDERFAGPEYGLPNEGTLEA 278
Query: 409 FKRSSRLEGII--PALETAHALAYLEKLC--PTLADGTKVVVNFSG 450
+ +R EG++ P ++ + ++ +G++V+ G
Sbjct: 279 IRLCARTEGMLTDPVY-EGKSMHGMIEMVRNGEFPEGSRVLYAHLG 323
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 146 bits (368), Expect = 1e-40
Identities = 65/362 (17%), Positives = 108/362 (29%), Gaps = 51/362 (14%)
Query: 107 DFQEELSGILRDYV---GRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINN 163
+ E L +LR V + TPL E+L+ I +KRED + K+
Sbjct: 8 EGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL------DNVILVKREDRQPVHSFKLRG 61
Query: 164 AVGQALLAKRLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR 223
A K + AG H A AR G++ ++ M + + +R
Sbjct: 62 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDA---VR 118
Query: 224 LLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGK 283
G EV + + I S + + G+
Sbjct: 119 GFGGEVL----------------LHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQ 162
Query: 284 ETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVN-DKDVRLIGVEAAGFGLDSGKHAA 342
T L + D + VGGG A G+ +++I VEA
Sbjct: 163 GTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDS--------- 213
Query: 343 TLSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTD 402
+ L + + G+ +G E L E + V
Sbjct: 214 ----------ACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDS 263
Query: 403 DEALEAFKRSSRLEGIIPALETAHALAYLEKLC-PTLADGTKVVVNFSGRGDKDVQTAIK 461
D A K + A ALA ++K G ++ SG + + ++
Sbjct: 264 DAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIRGERLAHILSG-ANVNFHG-LR 321
Query: 462 YL 463
Y+
Sbjct: 322 YV 323
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 141 bits (356), Expect = 8e-39
Identities = 56/342 (16%), Positives = 107/342 (31%), Gaps = 48/342 (14%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALL---AKRLGKTRII 180
+P+ RL++H G ++Y KRED N A N + T ++
Sbjct: 16 SPISNLNRLSQHL----GSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLV 71
Query: 181 AETG-AGQHGVATATVCARFGLQCIVYM--------GAQDMERQALNVFRMRLLGAEVRA 231
+ G A + A+ G +C++ +D+ + N+ R++GA+VR
Sbjct: 72 SIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRV 131
Query: 232 VHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALE 291
+ G + + + Y + + H Y + A +
Sbjct: 132 IEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFA----DEVINQEV 187
Query: 292 KWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351
+ G K D ++ C GS G+ + A F + K
Sbjct: 188 ELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTK------------ 235
Query: 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKR 411
Q + + +A L + L Y V ++ +EA +
Sbjct: 236 -------------EQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRT 282
Query: 412 SSRLEGIIPA-LETAHALAYLEKLC--PTLADGTKVVVNFSG 450
+ EG++ + ++ L L G V+ G
Sbjct: 283 CAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYVHLG 324
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 137 bits (346), Expect = 3e-37
Identities = 59/347 (17%), Positives = 109/347 (31%), Gaps = 48/347 (13%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLAKRL 174
+G TP+ ++ + + G + K E N G+ K + A L
Sbjct: 40 KKIGD-TPMVRINKIGKKF----GLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTL 94
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
I E +G G+ A A G +CI+ M + V +R LGAE+ +
Sbjct: 95 KPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSE---KVDVLRALGAEIVRTPT 151
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRR-QALEKW 293
++V + + H + + +T + L++
Sbjct: 152 NAR---------FDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQC 202
Query: 294 GGKPDVLIACVG-GGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352
GK D+L+A VG GG+ R+IGV+ G L +
Sbjct: 203 DGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEE------------ 250
Query: 353 HGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRS 412
+ + + ++ G + L +++ D+EA +
Sbjct: 251 --------------LNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARML 296
Query: 413 SRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTA 459
EG++ +A K L +G + VV +
Sbjct: 297 IAQEGLLCGGSAGSTVAVAVKAAQELQEGQRCVVILPDSVRNYMTKF 343
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 127 bits (320), Expect = 7e-34
Identities = 59/352 (16%), Positives = 114/352 (32%), Gaps = 54/352 (15%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
++ + + TP+ + + + + ++ K E+ GA K A+
Sbjct: 15 IKKFANK-TPVLTSSTVNKEF------VAEVFFKCENFQKMGAFKFRGALNALSQLNEAQ 67
Query: 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235
+ + +G H A A G+ + M E + V + G +V
Sbjct: 68 RKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAK---VAATKGYGGQVIMYDRY 124
Query: 236 TATLKDATSE-AIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG 294
+ E + R+ +T + PY H + G+ T + L +
Sbjct: 125 KDDREKMAKEISEREGLTII-------------PPYD----HPHVLAGQGTAAKELFEEV 167
Query: 295 GKPDVLIACVGGGSNAMGL---FHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351
G D L C+GGG G F + +V + EA G S +
Sbjct: 168 GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRK----------- 216
Query: 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKR 411
I P +I+ G +G + E + V+D+E ++ K
Sbjct: 217 ----------GSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKF 266
Query: 412 SSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAIKYL 463
+ I+ + A + L + + + SG G+ D++ +L
Sbjct: 267 YAARMKIVVEPTGCLSFAAARAMKEKLKNKR-IGIIISG-GNVDIERYAHFL 316
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 125 bits (313), Expect = 4e-33
Identities = 56/350 (16%), Positives = 101/350 (28%), Gaps = 57/350 (16%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
+ +G+ TP+ ++ E +++K E LN G+ K A A+ G
Sbjct: 3 VEGAIGK-TPVVRLAKVVEPD------MAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERG 55
Query: 176 -----KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVR 230
++I E +G G+ A + A G + I+ M AQ E + +
Sbjct: 56 ILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTD 115
Query: 231 AVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQAL 290
+ E ++ P VR + G E
Sbjct: 116 PER-------RMLAAREEALRLKEELGAFMPD----QFKNPANVRAHYETTGPEL----Y 160
Query: 291 EKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVG 350
E G+ D + G G G+ + +
Sbjct: 161 EALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKV----------------------IA 198
Query: 351 VLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFK 410
V + L + G G G G L V +++A +
Sbjct: 199 VEPARSNVLSGGKMG--------QHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLAR 250
Query: 411 RSSRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAI 460
R +R EG+ + + + ++ L G +V G K + T +
Sbjct: 251 RLAREEGLFLGMSSGGIVWAALQVARELGPGKRVACISPDGGWKYLSTPL 300
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 120 bits (301), Expect = 5e-31
Identities = 64/343 (18%), Positives = 115/343 (33%), Gaps = 41/343 (11%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIAET 183
TPL + E + G +Y K E LN TG+ K A G + +
Sbjct: 29 TPLIPLKGPEEARK----KGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGAQAVACAS 84
Query: 184 GAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDAT 243
G + A AR G+ IV + A + + +++ G ++
Sbjct: 85 T-GNTAASAAAYAARAGILAIVVLPAGYVALGKVA-----------QSLVHGARIVQVEG 132
Query: 244 SEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIAC 303
+ +T T + + V +P+ + + A + +++ G P
Sbjct: 133 NFDDALRLTQKLTEAFPVALVNSVNPHRLEGQKTLA-------FEVVDELGDAPHYHALP 185
Query: 304 VGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYLLQNE 363
VG N + + + +G + L+
Sbjct: 186 VGNAGNITAHWMGYKAYHALGKAKRLPR----------------MLGFQAAGAAPLVLGR 229
Query: 364 DGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALE 423
+ E + + + P K+E VTD+E L A++ +R EGI
Sbjct: 230 PVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPA 289
Query: 424 TAHALAYLEKLC--PTLADGTKVVVNFSGRGDKDVQTAIKYLQ 464
+A A+A + KL L + VV+ +G G KD TA + +
Sbjct: 290 SAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATAERVAE 332
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 115 bits (287), Expect = 2e-29
Identities = 57/349 (16%), Positives = 99/349 (28%), Gaps = 50/349 (14%)
Query: 108 FQEELSGILR-DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNH--TGAHKINNA 164
L+ R + + ETP+ + ++ G +Y+KR+DL G +KI
Sbjct: 5 IFALLAKFPRVELIPWETPIQYLPNISREI------GADVYIKRDDLTGLGIGGNKIRKL 58
Query: 165 VGQALLAKRLG-KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMR 223
A G I H T + GL I+ + ++ + + ++
Sbjct: 59 EYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIM 118
Query: 224 LLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGK 283
G E R + + +E I + + Y++ G P +
Sbjct: 119 --GIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVI-PPGGASPIGTLGYVRAV---- 171
Query: 284 ETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAAT 343
+ + K D ++ G G GL + A G
Sbjct: 172 ---GEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGR---------- 218
Query: 344 LSKGEVGVLHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDD 403
E + I + GV E + Y
Sbjct: 219 -----------------FGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKITG 261
Query: 404 EALEAFKRSSRLEGII--PALETAHALAYLEKLCPTLADGTKVVVNFSG 450
E + ++ EGII P T A L L G K++ +G
Sbjct: 262 EVAQIIRKVGTREGIILDPV-YTGKAFYGLVDLARKGELGEKILFIHTG 309
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 117 bits (293), Expect = 3e-29
Identities = 51/346 (14%), Positives = 99/346 (28%), Gaps = 36/346 (10%)
Query: 124 TPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGK----TRI 179
+ L++AER + + G +++K ++HTG+ K RL K
Sbjct: 122 SNLFWAERFGKQF----LGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVG 177
Query: 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239
+ G A + CA G+ IV++ A + L +
Sbjct: 178 VGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIA----------NGAFVLS 227
Query: 240 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDV 299
D + + + I + + + PD
Sbjct: 228 IDTDFDGCMKLIREITAELPI-------YLANSLNSLRLEGQKTAAIEILQQFDWQVPDW 280
Query: 300 LIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL 359
+I G N + F ++ G + + + S
Sbjct: 281 VIVPGGNLGNIYAFYKGFKMCQE--------LGLVDRIPRMVCAQAANANPLYLHYKSGW 332
Query: 360 LQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGII 419
+ + + + P + + T++E ++A ++ G+
Sbjct: 333 KDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADS-TGMF 391
Query: 420 PALETAHALAYLEKLC--PTLADGTKVVVNFSGRGDKDVQTAIKYL 463
T AL L KL +A + VV + G K Q+ I Y
Sbjct: 392 ICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYH 437
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 107 bits (268), Expect = 7e-27
Identities = 53/336 (15%), Positives = 90/336 (26%), Gaps = 46/336 (13%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLG 175
+ Y R TPL + L G + LK E L TG+ K A+ +AL L
Sbjct: 13 IAPYTHR-TPLLTSRLLDGLL------GKRLLLKAEHLQKTGSFKARGALSKAL---ALE 62
Query: 176 KTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235
+ + +G H A G++ +V M + +
Sbjct: 63 NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKN 122
Query: 236 TATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGG 295
+ A E + HP+ + + G
Sbjct: 123 REEVARALQEETGYAL---------------IHPFDDPLVIAGQGTAGLELLAQAGRMGV 167
Query: 296 KPDVLIACVGGGSNAM-GLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHG 354
P ++A VGGG ++GVE A
Sbjct: 168 FPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEA------------ 215
Query: 355 ALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSR 414
P + + G+ +G + E V+++ LEA +
Sbjct: 216 ------GRILRLEAPPRTRADGVRTLSLGERTFPILRERVDGILTVSEEALLEAERLLFT 269
Query: 415 LEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSG 450
+ A LA + + L + + SG
Sbjct: 270 RTKQVVEPTGALPLAAVLEHGARL--PQTLALLLSG 303
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 107 bits (268), Expect = 7e-27
Identities = 59/339 (17%), Positives = 96/339 (28%), Gaps = 49/339 (14%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLAKRL 174
+G TPL R+ I K E N + + K N + A L
Sbjct: 9 LTIGH-TPLVRLNRIG---------NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVL 58
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
+ E G G+A A V A G + + M + + +
Sbjct: 59 KPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG 294
++ A D + + P G E E
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQF---------SNPANPEIHEKTTGPEI----WEDTD 165
Query: 295 GKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHG 354
G+ DV I+ VG G + ++ + + A DS A L
Sbjct: 166 GQVDVFISGVGTGGT-LTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQAL---------- 214
Query: 355 ALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSR 414
+I G+ G G L + + +T++EA+ +R
Sbjct: 215 --------AGEEIKPGPHKIQGI---GAGFIPGNLDLKLIDKVVGITNEEAISTARRLME 263
Query: 415 LEGIIPALETAHALAYLEKLCPT-LADGTKVVVNFSGRG 452
EGI+ + + A+A KL +VV G
Sbjct: 264 EEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSG 302
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 101 bits (253), Expect = 6e-25
Identities = 57/348 (16%), Positives = 99/348 (28%), Gaps = 63/348 (18%)
Query: 116 LRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKI---NNAVGQALLAK 172
L +G TPL +R+ G ++LK E N G+ K + + +A
Sbjct: 3 LEQTIGN-TPLVKLQRMGPDN------GSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRG 55
Query: 173 RLGKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAV 232
+ ++ E +G G+A A + A G + + M MR GAE+ V
Sbjct: 56 EIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLM---PDNMSQERRAAMRAYGAELILV 112
Query: 233 HSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEK 292
A + D T + ++
Sbjct: 113 TKE-----QGMEGARDLALEMANRGEG-------KLLDQFNNPDNPYAHYTTTGPEIWQQ 160
Query: 293 WGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352
GG+ ++ +G G+ I
Sbjct: 161 TGGRITHFVSSMGTTGTITGVSRFMREQSKPVTI-------------------------- 194
Query: 353 HGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRS 412
LQ E+G I PG+ E ++ +A +
Sbjct: 195 -----VGLQPEEGSSIPGIRRWPTEYLPGIFNASLV------DEVLDIHQRDAENTMREL 243
Query: 413 SRLEGIIPALETAHALAYLEKLCPTLADGTKVVVNFSGRGDKDVQTAI 460
+ EGI + + A+A ++ D VV RGD+ + T +
Sbjct: 244 AVREGIFCGVSSGGAVAGALRVAKANPDAV-VVAIICDRGDRYLSTGV 290
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 87.5 bits (215), Expect = 1e-19
Identities = 51/347 (14%), Positives = 94/347 (27%), Gaps = 53/347 (15%)
Query: 122 RETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKTRIIA 181
+TP+ + L++ G +YLK + +G+ KI + G +
Sbjct: 6 VKTPIRDSMALSKMA------GTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVC 59
Query: 182 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKD 241
+ AG G+A A + G+ + + +
Sbjct: 60 SS-AGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEG-----------------A 101
Query: 242 ATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLI 301
E + + G P ++ E KP +
Sbjct: 102 TCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIA 161
Query: 302 ACVGGGSN--AMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSYL 359
VGGG + + DV +I +E G A
Sbjct: 162 LSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTA----------------- 204
Query: 360 LQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGII 419
+ + + S++ L VG + L E ++D EA+ A ++ E I+
Sbjct: 205 --GKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKIL 262
Query: 420 PALETAHALAYLEKLC--------PTLADGTKVVVNFSGRGDKDVQT 458
ALA + +VV G + +
Sbjct: 263 VEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQ 309
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 87.2 bits (215), Expect = 1e-19
Identities = 57/348 (16%), Positives = 109/348 (31%), Gaps = 60/348 (17%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKINNAVGQALLAKRLGKT 177
+ +G TPL + + E G + K E + + K A++ G
Sbjct: 9 ELIGN-TPLVYLNNVAE------GCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLI 61
Query: 178 R----IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVH 233
+ ++ E +G GV A A G + I+ M A + + +
Sbjct: 62 KPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTER------------RIILLA 109
Query: 234 SGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMM--VRDFHAVIGKETRRQALE 291
G + ++ ++ + E + + + + G E +
Sbjct: 110 FGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGT-- 167
Query: 292 KWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGV 351
GGK D ++ +G G G + +A LS G+ G
Sbjct: 168 --GGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVE-------PVESAILSGGKPG- 217
Query: 352 LHGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKR 411
I+ G G S L + E V+ DE+++ ++
Sbjct: 218 -------------PHKIQGI---------GAGFIPSVLNVDLIDEVVQVSSDESIDMARQ 255
Query: 412 SSRLEGIIPALETAHALAYLEKLCPTLAD-GTKVVVNFSGRGDKDVQT 458
+ EG++ + + A A KL + G V F G++ + T
Sbjct: 256 LALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLST 303
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 86.9 bits (214), Expect = 2e-19
Identities = 65/349 (18%), Positives = 109/349 (31%), Gaps = 53/349 (15%)
Query: 118 DYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGAHKIN---NAVGQALLAKRL 174
+G TPL + ++ +K E N + + K N V QA L
Sbjct: 8 YSIGN-TPLVRLKHFGH--------NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 58
Query: 175 GKTRIIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHS 234
K + I + +G G+A A V A G + + M + + + V V +
Sbjct: 59 TKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGL-----GVNLVLT 113
Query: 235 GTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG 294
A + V + + + +L P + G E +
Sbjct: 114 EGAKGMKGAIAKAEEIVASDPSRYVML----KQFENPANPQIHRETTGPE----IWKDTD 165
Query: 295 GKPDVLIACVGGGSNAMGLFHEF--VNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVL 352
GK DV++A VG G + G+ K + + VE + S A K +
Sbjct: 166 GKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKI 225
Query: 353 HGALSYLLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRS 412
G G G L V D AL +R
Sbjct: 226 QG-------------------------IGAGFIPKNLDLSIIDRVETVDSDTALATARRL 260
Query: 413 SRLEGIIPALETAHALAYLEKLCPTL-ADGTKVVVNFSGRGDKDVQTAI 460
EGI+ + + A+A ++L +VV ++ + TA+
Sbjct: 261 MAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTAL 309
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 86.4 bits (213), Expect = 4e-19
Identities = 61/338 (18%), Positives = 97/338 (28%), Gaps = 62/338 (18%)
Query: 121 GRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHTGA-HKINNAVGQALLA-KRLGKTR 178
G+ TPL R R G ++LK E N K AV +R+ K
Sbjct: 93 GKPTPLV---RS----RLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGS 145
Query: 179 IIAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTAT 238
++A+ + GVA + V +G + VY+ E L + GA+V +T
Sbjct: 146 LVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLL---GAQVIVDPEAPST 202
Query: 239 LKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPD 298
+ + +E Q+
Sbjct: 203 VHLLPRVMKDSKNEGFVHVNQ--------FYNDANFEAHMRGTAREIFVQSRRGGLALRG 254
Query: 299 VLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLDSGKHAATLSKGEVGVLHGALSY 358
V + G + F+ D +R + V+ A G G L
Sbjct: 255 VAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVE---------TGMLWI 305
Query: 359 LLQNEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGI 418
+ + + E VT +EA+EA +R +G+
Sbjct: 306 NMLDISYTLAE------------------------------VTLEEAMEAVVEVARSDGL 335
Query: 419 IPALETAHALAYLEKLC--PTLADGTKVVVNFSGRGDK 454
+ A+ L K L G VVV G K
Sbjct: 336 VIGPSGGAAVKALAKKAAEGDLEPGDYVVV-VPDTGFK 372
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 193
Score = 27.2 bits (60), Expect = 3.1
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 185 AGQHGVATATVCARFGLQ---CIVYMGAQDMERQALNVFRMRLLGAEVRAVHSG 235
AG G+ + +R + A D+ QA + +++ + A H+
Sbjct: 105 AGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTK 158
>d2bsqe1 a.43.1.8 (E:2-70) Trafficking protein A {Neisseria
gonorrhoeae [TaxId: 485]}
Length = 69
Score = 25.1 bits (55), Expect = 4.0
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 94 ELESALHKLA--DDRDFQEELSGILRDYVGRETPLYFAERLTEHYRRPNG 141
+A+ A R + E+ IL + + + L + G
Sbjct: 11 ATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRLGSMLASIGQEIGG 60
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 26.8 bits (58), Expect = 4.4
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRL 224
+ G G G A V A G ++ +D+ ++ L
Sbjct: 7 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESL 51
>d1z9ha1 a.45.1.1 (A:213-373) Microsomal prostaglandin E synthase-2
{Crab-eating macaque (Macaca fascicularis) [TaxId:
9541]}
Length = 161
Score = 26.7 bits (59), Expect = 4.7
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 69 RPDVFGRFGRFGGKFVPETLMYALSELESALHKLADDR--DFQEELSGIL------RDYV 120
R FG K++ MY +S+ + H+L D+ D E + R ++
Sbjct: 54 REGKFGAVEGAVAKYMGAAAMYLISKRLKSRHRLQDNVREDLYEAADKWVAAVGKDRPFM 113
Query: 121 GRETPLY 127
G + P
Sbjct: 114 GGQKPNL 120
>d2qtpa1 d.79.9.1 (A:3-171) Uncharacterized protein SPO0826
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 169
Score = 26.6 bits (59), Expect = 5.4
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 19/76 (25%)
Query: 247 IRDWVTNVETTHYILGSVAGP------------HPY-------PMMVRDFHAVIGKETRR 287
IR +E T G P +P+ + D A +G
Sbjct: 2 IRKIAVFIEETRIEAGREISPPTRKAVAVAVIENPFAGRYVEDLTELMDTGAELGALLGE 61
Query: 288 QALEKWGGKPDVLIAC 303
+ ++ G +P+ +
Sbjct: 62 RCVQALGIRPEQAESY 77
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase,
middle domain {Escherichia coli [TaxId: 562]}
Length = 179
Score = 26.3 bits (57), Expect = 7.1
Identities = 26/157 (16%), Positives = 41/157 (26%), Gaps = 24/157 (15%)
Query: 180 IAETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATL 239
+A GAG G+A A A G Q ++ D + F + ++ TL
Sbjct: 46 LAVVGAGPAGLAFAINAAARGHQVTLF----DAHSEIGGQFN---IAKQIPGKEEFYETL 98
Query: 240 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDV 299
+ + V L A GK
Sbjct: 99 RY------YRRMIEVTGVTLKLNHTVTADQLQAFDETILASGIPNRALAQPLIDSGKT-- 150
Query: 300 LIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLD 336
+ +GG AM + D R + L+
Sbjct: 151 -VHLIGGCDVAM--------ELDARRAIAQGTRLALE 178
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
faecalis (Streptococcus faecalis) [TaxId: 1351]}
Length = 353
Score = 26.5 bits (58), Expect = 8.1
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 343 TLSKGEVGVLHGALSYLLQNEDGQIIEP-------HSISAGLDYPGVGPEHSFLKDEGRA 395
+ G+LS L + ++P HS S G PG E E +A
Sbjct: 113 AKTDLAYENEDGSLSLLFDQAVVENMQPEDMYQLIHSQSKGFRLPGWEEERLQQFQELKA 172
Query: 396 EYYNVTDDEALEAFKRSSRLEGIIPALETAHALAYLEKLCPTLA 439
Y VT+++ +E + LE +IP E + + P
Sbjct: 173 MYAGVTEEDLVENLRY--FLERVIPVCEEENIKMGIHPDDPPWE 214
>d1otva_ a.132.1.4 (A:) Coenzyme PQQ synthesis protein C, PqqC
{Klebsiella pneumoniae [TaxId: 573]}
Length = 254
Score = 26.1 bits (57), Expect = 8.5
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 371 HSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEAFKRSSRLEGIIPALETAHALAY 430
+ P+ + + ++Y +E F+ SRL +E H LA
Sbjct: 137 QEAACSSLTELFAPQIHQSRLDSWPQHYPWIKEEGYFYFR--SRLSQANRDVE--HGLAL 192
Query: 431 LEKLCPTLADGTKV 444
+ C + ++
Sbjct: 193 AKAYCDSAEKQNRM 206
>d2bmob1 d.17.4.4 (B:1-194) Nitrobenzene dioxygenase beta subunit,
NBDO-beta {Comamonas sp. JS765 [TaxId: 58226]}
Length = 194
Score = 26.1 bits (57), Expect = 8.8
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 115 ILRDYVGRETPLYFAERLTEHYRRPNGGGPHIYLKREDLNHT 156
+ R + +++A R + ++R GGG + + D
Sbjct: 143 LHRARRENQVDVFYATR-EDKWKRIEGGGIKLVERFVDYPER 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,724,081
Number of extensions: 81984
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 39
Length of query: 465
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 377
Effective length of database: 1,199,356
Effective search space: 452157212
Effective search space used: 452157212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)