BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012342
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/480 (46%), Positives = 300/480 (62%), Gaps = 38/480 (7%)
Query: 7 ACSKVHAVCIPSPFQSHIXXXXXXXXXXXXXGFHITFVNTEFNHRRLLKARGQHSLDGLP 66
A K H V IP P Q HI GFHITFVNTE+NH+RLLK+RG + DG
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFT 64
Query: 67 SFRFEAIPDGLPASSDESPTAQDAYSL--------------------------------- 93
F FE+IPDGL + +QD +L
Sbjct: 65 DFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVS 124
Query: 94 DGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKDKSCLTKEYLNSL 153
D + FTI AA++ LP VL+F+ SACS + F++F E+G+ P KD+S LT L +
Sbjct: 125 DCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETK 184
Query: 154 IDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNA 213
+DWIPG+K+ R++D+ FI++T+P D+M +E + +K + I+++TF+ LE V+NA
Sbjct: 185 VDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINA 244
Query: 214 LSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNF 273
LS P ++ IGPL LL QT Q L+S+ NL KE+TECL WL+ KEP SV+YVNF
Sbjct: 245 LSSTIPS-IYPIGPLPSLLKQTP-QIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNF 302
Query: 274 GSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP 333
GS M +QL+E A GL N FLWIIRPDLV G + +EF + ++G +ASWCP
Sbjct: 303 GSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCP 362
Query: 334 QEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING 393
Q++VL HPSIGGFLTHCGWNS ES+C+GVPM+CWPF DQPT+ R++CNEW +GMEI
Sbjct: 363 QDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI-- 420
Query: 394 DDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 453
D +V R E+ KL+ E++ G+KGK+M+ KAME K AEE P G S +NL+K++ ++LL
Sbjct: 421 -DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVLL 479
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 182/378 (48%), Gaps = 46/378 (12%)
Query: 85 PTA--QDAYSLDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKDK 142
PTA D + D F A + +P +F+ +A F E
Sbjct: 111 PTALVVDLFGTDAF-----DVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET-------V 158
Query: 143 SCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHT 202
SC +E L+ +PG + +D + D KD + + T+ +A I+++T
Sbjct: 159 SCEFRELTEPLM--LPGCVPVAGKDF--LDPAQDRKDDAYKWLLHNTKRYKEAEGILVNT 214
Query: 203 FDALEQQVLNALS--FMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWL 260
F LE + AL + ++ +GPL + Q +Q EE+ECL+WL
Sbjct: 215 FFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQ------------TEESECLKWL 262
Query: 261 DCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIR-PDLV-----------T 308
D + SV+YV+FGS + +QL E+A+GL +S FLW+IR P + T
Sbjct: 263 DNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQT 322
Query: 309 GETADLPAEFEVKAKEKGFVAS-WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMIC 367
LP F + K++GFV W PQ +VL HPS GGFLTHCGWNS +ES+ SG+P+I
Sbjct: 323 DPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIA 382
Query: 368 WPFTGDQPTNGRYVCNEWGVGMEIN-GDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEW 426
WP +Q N + + + GDD V R EV ++V+ +MEGE+GK +RNK E
Sbjct: 383 WPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKEL 442
Query: 427 KGLAEEAAAPHGSSSLNL 444
K A G+S+ L
Sbjct: 443 KEAACRVLKDDGTSTKAL 460
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/400 (28%), Positives = 186/400 (46%), Gaps = 28/400 (7%)
Query: 53 LLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQDAYSLDGFLPFTITAAQQLGLPIV 112
+ R Q ++ E+ G+ + E+ D F+ F A ++G+ +
Sbjct: 78 VFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWL 137
Query: 113 LFFTISACSFMGFKQFQTFKEK-GLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSF 171
F+T S +EK G+ ++ + + L+++IPGM +R RDL
Sbjct: 138 PFWTAGPNSLSTHVYIDEIREKIGVSGIQGRE-------DELLNFIPGMSKVRFRDLQEG 190
Query: 172 IQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLL 231
I + + + + KA+A+ I++F+ L+ + N L +L IGP L+
Sbjct: 191 IVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYL-NIGPFNLI 249
Query: 232 LNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGL 291
++ T CLQWL ++P SV+Y++FG+ +++ ++ L
Sbjct: 250 TPPP-------------VVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEAL 296
Query: 292 VNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCG 351
S PF+W +R LP F K + G V W PQ EVL H ++G F+THCG
Sbjct: 297 EASRVPFIWSLRDK----ARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCG 352
Query: 352 WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 411
WNS+ ES+ GVP+IC PF GDQ NGR V + +G+ I G ++ + +++
Sbjct: 353 WNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGG--VFTKSGLMSCFDQIL 410
Query: 412 EGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 451
EKGK++R + A+ A P GSS+ N LV+ +
Sbjct: 411 SQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 151 bits (381), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 187/378 (49%), Gaps = 47/378 (12%)
Query: 93 LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ-TFKEKGLFPVKDKSCLTKEYLN 151
LD F I + G+P LF T S +GF + K + + V D S + LN
Sbjct: 120 LDFFCVSMIDVGNEFGIPSYLFLT----SNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLN 175
Query: 152 SLIDWIPGMKDIRIRDLPSFI--QSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQ 209
IPG+ + +PS + + KD + + E II++TF LEQ
Sbjct: 176 -----IPGISN----QVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQS 226
Query: 210 VLNALSFMFPHH-----LFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKE 264
++AL + H ++ +GPL L Q + L+ ++L+ L+WLD +
Sbjct: 227 SIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPK---LDQAQHDLI------LKWLDEQP 274
Query: 265 PKSVIYVNFGSF-IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE--VK 321
KSV+++ FGS + Q+ E+A+GL +S FLW + E P F ++
Sbjct: 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFPEGFLEWME 329
Query: 322 AKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYV 381
+ KG + W PQ EVL H +IGGF++HCGWNSI+ES+ GVP++ WP +Q N +
Sbjct: 330 LEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRL 389
Query: 382 CNEWGVGMEINGD----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPH 437
EWGVG+ + D + V E+EK ++++M +K + K E K ++ A
Sbjct: 390 VKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDG 447
Query: 438 GSSSLNLDKLVNEILLSN 455
GSS +++ KL+++I SN
Sbjct: 448 GSSLISVGKLIDDITGSN 465
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 47/374 (12%)
Query: 93 LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ-TFKEKGLFPVKDKSCLTKEYLN 151
LD F I + G+P LF T S +GF + K + + V D S + LN
Sbjct: 120 LDFFCVSMIDVGNEFGIPSYLFLT----SNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLN 175
Query: 152 SLIDWIPGMKDIRIRDLPSFI--QSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQ 209
IPG+ + +PS + + KD + + E II++TF LEQ
Sbjct: 176 -----IPGISN----QVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQS 226
Query: 210 VLNALSFMFPHH-----LFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKE 264
++AL + H ++ +GPL L Q + L+ ++L+ L+WLD +
Sbjct: 227 SIDAL---YDHDEKIPPIYAVGPLLDLKGQPNPK---LDQAQHDLI------LKWLDEQP 274
Query: 265 PKSVIYVNFGSF-IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE--VK 321
KSV+++ FGS + Q+ E+A+GL +S FLW + E P F ++
Sbjct: 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFPEGFLEWME 329
Query: 322 AKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYV 381
+ KG + W PQ EVL H +IGGF++HCGWNSI+ES+ GVP++ WP +Q N +
Sbjct: 330 LEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRL 389
Query: 382 CNEWGVGMEINGD----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPH 437
EWGVG+ + D + V E+EK ++++M +K + K E K ++ A
Sbjct: 390 VKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDG 447
Query: 438 GSSSLNLDKLVNEI 451
GSS +++ KL+++I
Sbjct: 448 GSSLISVGKLIDDI 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 149/298 (50%), Gaps = 27/298 (9%)
Query: 154 IDWIPGMKDIRIRDLP-SFIQSTDP--KDMMFNLCVEATENASKASAIIIHTFDALEQQV 210
ID +PG +++ DLP I+ D M+ + +E +A+A+ I++F + +
Sbjct: 176 IDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLEL----PRANAVAINSFATIHPLI 231
Query: 211 LNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIY 270
N L+ F L +GP L Q + D E CL+WLD E SV+Y
Sbjct: 232 ENELNSKF-KLLLNVGPFNLTTPQRKVSD-------------EHGCLEWLDQHENSSVVY 277
Query: 271 VNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVAS 330
++FGS + +L +A L PF+W R D LP F + K KG + +
Sbjct: 278 ISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----PKEKLPKGFLERTKTKGKIVA 333
Query: 331 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 390
W PQ E+LKH S+G FLTH GWNS++E + GVPMI PF GDQ N + E + +
Sbjct: 334 WAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLN--TILTESVLEIG 391
Query: 391 INGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLV 448
+ D+ + + ++K + M EKG MR K ++ K A +A +G+S+++ L+
Sbjct: 392 VGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLI 449
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 331 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTN 377
W PQ ++L HP F+TH G N I E++ G+P + P DQP N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 328 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 387
V W PQ ++L S F+TH G S +E+L + VPM+ P +Q N + E G+
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGL 365
Query: 388 GMEINGD 394
G I D
Sbjct: 366 GRHIPRD 372
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 252 EETECLQWLDCKE-PKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGE 310
E+ + WL ++ + ++Y+ G+ + L GL + L P L
Sbjct: 227 EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSG 286
Query: 311 TADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF 370
++PA ++ SW PQ +L H + + H G + + +L +GVP + +P+
Sbjct: 287 LGEVPANVRLE--------SWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPW 336
Query: 371 TGD 373
GD
Sbjct: 337 AGD 339
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 318 FEVKAKEKGFVASWCPQEE-----------------VLKHPSIGGFLTHCGWNSIVESLC 360
FE KA++ GF S+ E V K +GG + G ++++E C
Sbjct: 241 FEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTC 300
Query: 361 SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR-NEVEKLVREMMEGEKGKQM 419
G+P+I P+T ++ E G G E+ + E V + E+ + +E+ EK +++
Sbjct: 301 WGIPVIYGPYTHKVNDLKEFLEKE-GAGFEVKNETELVTKLTELLSVKKEIKVEEKSREI 359
Query: 420 RNKAME 425
+ +E
Sbjct: 360 KGCYLE 365
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 259 WLDCKEPKSVIYVNFGSFIFMNKQQLIEV--AMGLVNSNHPFLWIIRPDLVTGETADLPA 316
W + V+ V+ GS E A G + H L I R + E +LP
Sbjct: 225 WQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGR-KVTPAELGELPD 283
Query: 317 EFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQ 374
EV W PQ +L+ + F+TH G E L + PMI P DQ
Sbjct: 284 NVEVH--------DWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQ 331
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 331 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 390
W P VL H LTH +++E+ +GVP++ P + E G+G
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 391 INGD--DEDVIRNEVEKL 406
+ D + IR VE+L
Sbjct: 346 LRPDQLEPASIREAVERL 363
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 331 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 390
W P +VL+ ++ +TH G ++ E+L G P++ P + D R V ++ G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 391 INGDDED 397
+ G+ D
Sbjct: 361 LPGEKAD 367
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 331 WCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 390
W P +VL+ ++ +TH G ++ E+L G P++ P + D R V ++ G+G
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRV-DQLGLGAV 360
Query: 391 INGDDED 397
+ G+ D
Sbjct: 361 LPGEKAD 367
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 305 DLVTGET-ADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGV 363
DLVT + + E E +A+++ F A WC EE++ H + HC E + +GV
Sbjct: 218 DLVTTDVWTSMGFEAENEARKRAF-ADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGV 276
>pdb|3LFH|A Chain A, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|B Chain B, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|C Chain C, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|D Chain D, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|E Chain E, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
pdb|3LFH|F Chain F, Crystal Structure Of Manxa From Thermoanaerobacter
Tengcongensis
Length = 144
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 387 VGMEINGDDEDVIRNEVEKLVREMMEGEK 415
VG+ + GD+ +V+R EVEK+++E ++ +K
Sbjct: 35 VGLNL-GDNIEVVRKEVEKIIKEKLQEDK 62
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 328 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 387
V W P +L+ + + H G +++ +L +GVP P Q TN R V G+
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLT--GL 346
Query: 388 GMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAA 434
G+ + + + + +L+ + E ++R + E AE AA
Sbjct: 347 GIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 328 VASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGV 387
V W P +L+ + + H G +++ +L +GVP P Q TN R V G+
Sbjct: 292 VVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN-RDVLT--GL 346
Query: 388 GMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAA 434
G+ + + + + +L+ + E ++R + E AE AA
Sbjct: 347 GIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETAA 393
>pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial
Phytochrome Cph1 In The Pr-State
Length = 520
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 257 LQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVN---SNHPFLWIIRPDLV 307
LQWL+ +E + V + + S I+ + VA GL+ + H FL RP+++
Sbjct: 392 LQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVL 445
>pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial
Phytochrome Cph1
Length = 520
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 257 LQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVN---SNHPFLWIIRPDLV 307
LQWL+ +E + V + + S I+ + VA GL+ + H FL RP+++
Sbjct: 392 LQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVL 445
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 284 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF 318
+ EVA + + + + WI+ P LV G+T +P+EF
Sbjct: 210 IFEVANSVGLTGYGYTWIV-PSLVAGDTDTVPSEF 243
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 284 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF 318
+ EVA + + + + WI+ P LV G+T +P+EF
Sbjct: 209 IFEVANSVGLTGYGYTWIV-PSLVAGDTDTVPSEF 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,841,245
Number of Sequences: 62578
Number of extensions: 576387
Number of successful extensions: 1272
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 25
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)