Query 012342
Match_columns 465
No_of_seqs 174 out of 1626
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 01:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.4E-68 2.9E-73 538.2 42.0 412 10-453 7-450 (451)
2 PLN02555 limonoid glucosyltran 100.0 2.5E-68 5.4E-73 538.1 42.6 435 1-456 1-472 (480)
3 PLN02562 UDP-glycosyltransfera 100.0 5.8E-67 1.2E-71 527.8 40.1 412 10-452 6-448 (448)
4 PLN02173 UDP-glucosyl transfer 100.0 1.1E-66 2.5E-71 521.9 39.5 409 10-452 5-447 (449)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.2E-66 7E-71 524.5 42.7 428 9-454 8-472 (477)
6 PLN02210 UDP-glucosyl transfer 100.0 3.3E-66 7.2E-71 522.8 40.8 424 1-452 1-454 (456)
7 PLN02992 coniferyl-alcohol glu 100.0 1.5E-66 3.2E-71 523.9 37.3 421 10-461 5-477 (481)
8 PLN02534 UDP-glycosyltransfera 100.0 1.8E-65 4E-70 517.9 42.4 426 10-454 8-487 (491)
9 PLN02207 UDP-glycosyltransfera 100.0 1.7E-65 3.6E-70 515.3 40.6 417 10-453 3-465 (468)
10 PLN00164 glucosyltransferase; 100.0 4.2E-65 9.2E-70 517.9 41.2 422 9-454 2-474 (480)
11 PLN02152 indole-3-acetate beta 100.0 3.8E-65 8.2E-70 511.7 39.8 408 10-451 3-454 (455)
12 PLN02764 glycosyltransferase f 100.0 8E-65 1.7E-69 506.9 40.5 405 9-459 4-451 (453)
13 PLN02670 transferase, transfer 100.0 2.8E-64 6.1E-69 506.9 41.2 417 10-455 6-467 (472)
14 PLN02448 UDP-glycosyltransfera 100.0 2.7E-64 5.7E-69 512.1 40.3 418 8-453 8-457 (459)
15 PLN03015 UDP-glucosyl transfer 100.0 4.3E-64 9.4E-69 503.1 40.6 417 10-452 3-467 (470)
16 PLN02554 UDP-glycosyltransfera 100.0 6.8E-64 1.5E-68 511.0 38.5 421 10-454 2-479 (481)
17 PLN03007 UDP-glucosyltransfera 100.0 4.2E-63 9.1E-68 505.8 42.6 424 10-454 5-481 (482)
18 PLN00414 glycosyltransferase f 100.0 2.9E-63 6.3E-68 498.9 39.9 394 10-455 4-442 (446)
19 PLN02208 glycosyltransferase f 100.0 1.9E-63 4E-68 499.7 38.5 391 10-454 4-440 (442)
20 PLN03004 UDP-glycosyltransfera 100.0 6.6E-63 1.4E-67 495.0 37.4 406 10-442 3-450 (451)
21 PLN02167 UDP-glycosyltransfera 100.0 1.4E-62 3E-67 500.6 40.1 421 10-454 3-473 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.7E-44 3.7E-49 369.5 25.4 388 11-454 21-467 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.1E-47 4.5E-52 396.4 2.8 366 12-432 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 9.1E-40 2E-44 328.9 28.8 337 16-432 1-375 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 2.2E-39 4.8E-44 327.3 20.3 340 11-432 1-387 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 9.1E-40 2E-44 339.1 14.4 392 10-445 5-447 (496)
27 COG1819 Glycosyl transferases, 100.0 1.5E-37 3.3E-42 310.1 21.6 167 264-454 235-401 (406)
28 PRK12446 undecaprenyldiphospho 99.8 6.3E-20 1.4E-24 181.0 18.3 146 263-425 182-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.8 1.1E-18 2.3E-23 170.8 20.7 121 266-410 192-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.7 1.8E-16 3.9E-21 154.9 22.3 148 265-426 182-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.7 2.8E-16 6.1E-21 153.7 20.8 125 266-415 188-316 (321)
32 PRK00726 murG undecaprenyldiph 99.6 1.4E-13 3E-18 136.9 25.0 115 325-451 236-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.5 2.2E-12 4.8E-17 127.8 23.7 138 265-415 180-326 (350)
34 COG4671 Predicted glycosyl tra 99.4 1.9E-11 4E-16 114.6 20.1 334 9-414 8-366 (400)
35 PF04101 Glyco_tran_28_C: Glyc 99.4 8.6E-15 1.9E-19 129.2 -2.9 138 268-415 1-146 (167)
36 TIGR01133 murG undecaprenyldip 99.4 4.9E-11 1.1E-15 118.0 23.1 78 333-415 243-323 (348)
37 TIGR00215 lpxB lipid-A-disacch 99.4 7.3E-11 1.6E-15 118.2 20.4 173 264-449 189-384 (385)
38 TIGR03590 PseG pseudaminic aci 99.3 2.7E-10 5.9E-15 108.9 21.4 104 267-381 171-279 (279)
39 PRK13609 diacylglycerol glucos 99.2 4.8E-10 1E-14 112.5 19.6 165 265-453 201-371 (380)
40 PF03033 Glyco_transf_28: Glyc 99.2 6.4E-12 1.4E-16 107.2 2.8 54 13-76 1-54 (139)
41 PRK00025 lpxB lipid-A-disaccha 99.2 1.8E-09 3.9E-14 108.3 18.8 107 335-451 256-375 (380)
42 cd03814 GT1_like_2 This family 99.0 4.1E-07 8.9E-12 89.7 29.8 129 267-415 197-334 (364)
43 PRK13608 diacylglycerol glucos 98.9 2.3E-08 5E-13 100.6 16.1 166 264-453 200-371 (391)
44 PLN02605 monogalactosyldiacylg 98.9 8.2E-08 1.8E-12 96.4 17.5 135 264-413 204-347 (382)
45 PLN02871 UDP-sulfoquinovose:DA 98.9 8.7E-06 1.9E-10 84.0 32.7 140 267-427 263-415 (465)
46 cd03817 GT1_UGDG_like This fam 98.7 2.4E-05 5.3E-10 77.0 28.3 143 266-428 201-359 (374)
47 COG3980 spsG Spore coat polysa 98.6 5.3E-06 1.2E-10 76.2 18.8 134 267-415 159-295 (318)
48 cd03808 GT1_cap1E_like This fa 98.6 8.5E-05 1.8E-09 72.5 28.5 135 266-415 187-331 (359)
49 cd03801 GT1_YqgM_like This fam 98.6 0.0002 4.3E-09 69.9 29.9 131 266-415 198-343 (374)
50 cd03823 GT1_ExpE7_like This fa 98.5 8.2E-05 1.8E-09 73.0 27.0 133 266-415 190-331 (359)
51 cd03794 GT1_wbuB_like This fam 98.5 5.2E-05 1.1E-09 75.0 25.5 131 266-415 219-367 (394)
52 cd04962 GT1_like_5 This family 98.5 0.00015 3.3E-09 72.0 28.8 142 266-426 196-350 (371)
53 cd03825 GT1_wcfI_like This fam 98.5 0.0003 6.6E-09 69.5 30.4 112 322-451 242-362 (365)
54 TIGR03492 conserved hypothetic 98.5 2.4E-06 5.2E-11 85.9 14.5 160 266-447 205-392 (396)
55 cd03821 GT1_Bme6_like This fam 98.4 0.00018 3.9E-09 70.7 26.4 142 266-426 202-359 (375)
56 PRK05749 3-deoxy-D-manno-octul 98.4 0.00017 3.8E-09 73.4 26.0 91 327-426 305-402 (425)
57 cd03800 GT1_Sucrose_synthase T 98.4 0.00039 8.5E-09 69.7 27.1 136 267-415 220-370 (398)
58 cd03818 GT1_ExpC_like This fam 98.3 0.0015 3.3E-08 65.9 30.3 93 324-427 281-381 (396)
59 cd03822 GT1_ecORF704_like This 98.3 0.0015 3.3E-08 64.2 29.9 134 267-415 185-336 (366)
60 cd03816 GT1_ALG1_like This fam 98.3 0.00059 1.3E-08 69.3 27.0 141 266-427 231-399 (415)
61 cd03820 GT1_amsD_like This fam 98.2 0.0028 6E-08 61.4 29.2 131 267-415 178-321 (348)
62 cd03798 GT1_wlbH_like This fam 98.2 0.0023 5E-08 62.6 28.2 133 266-415 201-346 (377)
63 cd03807 GT1_WbnK_like This fam 98.1 0.011 2.4E-07 57.7 30.4 132 266-415 192-334 (365)
64 cd04955 GT1_like_6 This family 98.1 0.0068 1.5E-07 59.8 28.7 126 269-415 195-332 (363)
65 KOG3349 Predicted glycosyltran 98.1 1.6E-05 3.5E-10 65.9 7.7 112 268-387 5-128 (170)
66 cd03796 GT1_PIG-A_like This fa 98.0 0.0097 2.1E-07 60.0 28.8 128 266-414 192-334 (398)
67 cd03804 GT1_wbaZ_like This fam 98.0 0.0002 4.4E-09 70.8 16.1 126 268-414 196-327 (351)
68 cd03811 GT1_WabH_like This fam 97.9 0.0046 9.9E-08 59.9 24.0 131 266-415 188-334 (353)
69 TIGR02472 sucr_P_syn_N sucrose 97.9 0.0066 1.4E-07 62.2 24.8 82 323-415 316-408 (439)
70 cd03812 GT1_CapH_like This fam 97.9 0.022 4.8E-07 56.0 27.6 130 266-415 191-333 (358)
71 cd03819 GT1_WavL_like This fam 97.8 0.041 8.9E-07 54.0 29.1 149 266-427 184-346 (355)
72 cd03795 GT1_like_4 This family 97.8 0.00049 1.1E-08 67.7 14.4 142 267-426 191-346 (357)
73 TIGR02468 sucrsPsyn_pln sucros 97.8 0.027 5.8E-07 62.4 28.5 161 254-427 468-652 (1050)
74 PLN02846 digalactosyldiacylgly 97.8 0.024 5.1E-07 57.9 26.4 73 328-414 288-364 (462)
75 COG1519 KdtA 3-deoxy-D-manno-o 97.8 0.0065 1.4E-07 59.8 21.1 99 325-431 301-405 (419)
76 cd03786 GT1_UDP-GlcNAc_2-Epime 97.7 0.00033 7.2E-09 69.6 12.1 132 265-415 197-339 (363)
77 TIGR00236 wecB UDP-N-acetylglu 97.7 0.00035 7.5E-09 69.7 11.9 154 267-447 198-361 (365)
78 PLN02949 transferase, transfer 97.7 0.096 2.1E-06 53.9 29.4 96 323-429 334-440 (463)
79 PRK15484 lipopolysaccharide 1, 97.6 0.005 1.1E-07 61.7 18.5 84 322-415 255-346 (380)
80 cd04946 GT1_AmsK_like This fam 97.6 0.002 4.4E-08 65.2 15.7 146 267-426 230-391 (407)
81 PRK15427 colanic acid biosynth 97.6 0.0028 6.1E-08 64.2 16.7 160 267-452 222-404 (406)
82 cd05844 GT1_like_7 Glycosyltra 97.5 0.0026 5.6E-08 63.1 14.9 82 323-415 244-338 (367)
83 cd03799 GT1_amsK_like This is 97.5 0.0025 5.3E-08 62.7 14.6 131 266-415 178-329 (355)
84 COG5017 Uncharacterized conser 97.5 0.0026 5.6E-08 52.1 11.4 107 269-392 2-122 (161)
85 PF00534 Glycos_transf_1: Glyc 97.4 0.0024 5.3E-08 55.9 12.4 133 265-415 13-160 (172)
86 PRK09922 UDP-D-galactose:(gluc 97.4 0.0076 1.6E-07 59.9 16.7 142 267-427 180-341 (359)
87 cd04951 GT1_WbdM_like This fam 97.3 0.0074 1.6E-07 59.4 15.7 128 266-414 187-327 (360)
88 PRK10307 putative glycosyl tra 97.3 0.012 2.5E-07 59.7 17.5 115 324-454 284-408 (412)
89 TIGR03449 mycothiol_MshA UDP-N 97.3 0.0064 1.4E-07 61.4 15.2 93 323-426 282-382 (405)
90 PF04007 DUF354: Protein of un 97.3 0.041 9E-07 53.7 19.8 137 253-411 167-308 (335)
91 PRK14089 ipid-A-disaccharide s 97.2 0.0022 4.7E-08 63.0 10.2 156 267-446 168-343 (347)
92 cd03805 GT1_ALG2_like This fam 97.2 0.0071 1.5E-07 60.6 14.1 149 266-426 210-378 (392)
93 cd03809 GT1_mtfB_like This fam 97.2 0.0076 1.6E-07 59.2 14.0 129 267-415 195-338 (365)
94 TIGR02149 glgA_Coryne glycogen 97.2 0.011 2.3E-07 59.2 15.1 144 267-425 201-365 (388)
95 PF13692 Glyco_trans_1_4: Glyc 97.1 0.0023 5E-08 53.6 8.4 127 268-413 3-135 (135)
96 PF13844 Glyco_transf_41: Glyc 97.1 0.0053 1.1E-07 62.1 12.0 143 264-415 282-432 (468)
97 TIGR03087 stp1 sugar transfera 97.1 0.017 3.6E-07 58.3 15.7 91 323-426 279-376 (397)
98 TIGR03088 stp2 sugar transfera 97.1 0.021 4.5E-07 56.9 16.2 131 266-415 193-340 (374)
99 cd03806 GT1_ALG11_like This fa 97.0 0.45 9.7E-06 48.4 25.2 80 323-415 304-394 (419)
100 cd04949 GT1_gtfA_like This fam 97.0 0.01 2.2E-07 59.1 12.9 101 323-431 260-364 (372)
101 PLN02501 digalactosyldiacylgly 96.8 0.44 9.5E-06 50.6 22.6 76 326-415 603-683 (794)
102 TIGR02918 accessory Sec system 96.7 0.05 1.1E-06 56.6 15.1 103 323-431 375-485 (500)
103 PRK09814 beta-1,6-galactofuran 96.6 0.012 2.7E-07 57.8 10.0 110 323-449 206-331 (333)
104 cd03813 GT1_like_3 This family 96.6 0.1 2.2E-06 54.1 17.1 135 266-415 292-444 (475)
105 cd04950 GT1_like_1 Glycosyltra 96.6 0.063 1.4E-06 53.6 15.1 125 268-414 206-341 (373)
106 PF02350 Epimerase_2: UDP-N-ac 96.6 0.012 2.6E-07 58.1 9.3 130 264-413 178-318 (346)
107 cd03792 GT1_Trehalose_phosphor 96.5 0.077 1.7E-06 52.9 15.2 137 266-415 189-339 (372)
108 cd03802 GT1_AviGT4_like This f 96.5 0.073 1.6E-06 51.7 14.3 128 268-413 172-308 (335)
109 PRK14098 glycogen synthase; Pr 96.4 0.13 2.7E-06 53.5 16.1 135 267-411 307-449 (489)
110 TIGR02095 glgA glycogen/starch 96.4 0.072 1.6E-06 55.1 14.1 130 266-412 290-436 (473)
111 COG0381 WecB UDP-N-acetylgluco 96.2 0.44 9.4E-06 46.8 17.6 157 266-449 204-370 (383)
112 PHA01633 putative glycosyl tra 96.1 0.23 5E-06 48.6 15.1 103 322-430 199-324 (335)
113 PRK15179 Vi polysaccharide bio 96.0 0.19 4.1E-06 54.2 15.4 96 323-427 573-674 (694)
114 PRK10017 colanic acid biosynth 95.8 0.26 5.6E-06 50.0 14.7 180 257-453 225-424 (426)
115 PF06722 DUF1205: Protein of u 95.8 0.0077 1.7E-07 47.4 2.7 53 254-306 28-85 (97)
116 COG3914 Spy Predicted O-linked 95.8 0.26 5.7E-06 50.5 14.0 133 264-408 427-573 (620)
117 cd03791 GT1_Glycogen_synthase_ 95.7 0.26 5.6E-06 50.9 14.7 135 266-413 295-442 (476)
118 PRK00654 glgA glycogen synthas 95.7 0.4 8.6E-06 49.5 15.8 134 266-412 281-427 (466)
119 PF02684 LpxB: Lipid-A-disacch 95.7 0.45 9.7E-06 47.3 15.3 164 264-441 182-365 (373)
120 TIGR03568 NeuC_NnaA UDP-N-acet 95.5 0.11 2.4E-06 51.8 10.7 128 266-411 201-337 (365)
121 PLN02316 synthase/transferase 95.4 0.72 1.6E-05 51.6 17.2 169 268-453 841-1033(1036)
122 PLN02275 transferase, transfer 95.4 0.17 3.7E-06 50.5 11.6 75 324-411 286-371 (371)
123 PRK15490 Vi polysaccharide bio 95.4 0.69 1.5E-05 48.2 15.8 74 323-407 454-532 (578)
124 PRK01021 lpxB lipid-A-disaccha 95.3 0.71 1.5E-05 48.4 15.6 161 263-439 410-594 (608)
125 KOG4626 O-linked N-acetylgluco 95.0 0.15 3.2E-06 52.5 9.5 122 264-392 756-888 (966)
126 PHA01630 putative group 1 glyc 94.9 0.8 1.7E-05 44.9 14.5 111 330-452 196-329 (331)
127 PF13524 Glyco_trans_1_2: Glyc 94.7 0.44 9.5E-06 36.8 9.9 82 349-448 9-91 (92)
128 COG0763 LpxB Lipid A disacchar 94.1 1.1 2.3E-05 44.1 12.8 174 263-451 185-379 (381)
129 PLN02939 transferase, transfer 93.9 2.4 5.2E-05 47.0 16.2 137 268-412 780-930 (977)
130 PRK10125 putative glycosyl tra 91.8 5.5 0.00012 40.3 14.8 115 268-407 242-365 (405)
131 TIGR02470 sucr_synth sucrose s 91.2 27 0.00058 38.4 31.7 80 323-411 618-707 (784)
132 cd01635 Glycosyltransferase_GT 90.7 1.3 2.9E-05 39.7 8.4 50 323-374 160-217 (229)
133 PRK14099 glycogen synthase; Pr 89.9 7.9 0.00017 40.2 14.2 135 268-414 296-448 (485)
134 TIGR02400 trehalose_OtsA alpha 89.2 4.3 9.3E-05 41.7 11.4 102 330-451 342-454 (456)
135 PLN00142 sucrose synthase 87.8 40 0.00088 37.2 18.0 69 346-423 670-747 (815)
136 PF06258 Mito_fiss_Elm1: Mitoc 87.7 3.9 8.6E-05 39.6 9.5 117 266-392 146-281 (311)
137 TIGR02193 heptsyl_trn_I lipopo 86.9 6.6 0.00014 38.1 10.8 140 259-411 172-319 (319)
138 TIGR03713 acc_sec_asp1 accesso 86.1 2.3 5.1E-05 44.4 7.4 92 324-431 409-507 (519)
139 TIGR02919 accessory Sec system 83.5 32 0.00068 35.2 14.1 123 266-415 283-413 (438)
140 PRK02261 methylaspartate mutas 83.3 3.8 8.3E-05 34.5 6.2 47 9-55 2-48 (137)
141 PF13477 Glyco_trans_4_2: Glyc 82.8 2.8 6E-05 34.9 5.3 51 12-74 1-51 (139)
142 cd03788 GT1_TPS Trehalose-6-Ph 81.2 8.5 0.00018 39.7 9.2 103 329-451 346-459 (460)
143 COG4370 Uncharacterized protei 79.4 6.1 0.00013 37.5 6.5 89 325-424 295-387 (412)
144 cd03793 GT1_Glycogen_synthase_ 77.9 13 0.00028 39.1 9.1 78 333-414 467-553 (590)
145 PLN03063 alpha,alpha-trehalose 77.4 10 0.00022 41.9 8.8 101 336-455 371-479 (797)
146 PRK02797 4-alpha-L-fucosyltran 76.3 49 0.0011 31.9 11.7 81 324-411 206-292 (322)
147 cd02067 B12-binding B12 bindin 74.8 6.8 0.00015 31.8 5.1 36 12-47 1-36 (119)
148 PF13579 Glyco_trans_4_4: Glyc 73.4 3.4 7.4E-05 34.7 3.1 26 26-51 6-31 (160)
149 cd03789 GT1_LPS_heptosyltransf 72.6 20 0.00044 33.9 8.6 94 267-368 122-223 (279)
150 PRK10307 putative glycosyl tra 72.3 5.8 0.00013 40.0 5.0 38 11-48 1-42 (412)
151 PF02441 Flavoprotein: Flavopr 72.3 6.1 0.00013 32.7 4.3 45 11-56 1-45 (129)
152 PF04464 Glyphos_transf: CDP-G 70.6 6.9 0.00015 38.9 5.0 113 324-448 252-368 (369)
153 cd03802 GT1_AviGT4_like This f 70.5 7.7 0.00017 37.4 5.3 38 11-48 1-46 (335)
154 TIGR02195 heptsyl_trn_II lipop 70.5 23 0.0005 34.5 8.7 96 265-368 173-276 (334)
155 cd07039 TPP_PYR_POX Pyrimidine 70.4 51 0.0011 28.5 9.8 29 342-370 63-97 (164)
156 PF07429 Glyco_transf_56: 4-al 69.9 1.1E+02 0.0024 30.0 12.6 82 324-412 245-332 (360)
157 cd03805 GT1_ALG2_like This fam 69.1 7.8 0.00017 38.5 5.1 37 11-47 1-39 (392)
158 PF13439 Glyco_transf_4: Glyco 69.1 5.5 0.00012 34.0 3.5 29 20-48 11-39 (177)
159 COG0438 RfaG Glycosyltransfera 69.1 1E+02 0.0022 28.8 16.8 132 268-414 200-343 (381)
160 cd04951 GT1_WbdM_like This fam 68.6 5.6 0.00012 38.7 3.9 34 13-46 2-37 (360)
161 TIGR02201 heptsyl_trn_III lipo 67.9 21 0.00046 35.0 7.8 98 265-368 180-285 (344)
162 PF01075 Glyco_transf_9: Glyco 67.2 14 0.0003 34.2 6.0 94 265-368 104-208 (247)
163 TIGR02398 gluc_glyc_Psyn gluco 67.2 1.2E+02 0.0026 31.5 13.1 109 327-454 365-483 (487)
164 PRK00654 glgA glycogen synthas 66.4 9.3 0.0002 39.4 5.1 38 11-48 1-44 (466)
165 PF02951 GSH-S_N: Prokaryotic 65.9 11 0.00023 30.9 4.3 39 11-49 1-42 (119)
166 cd07037 TPP_PYR_MenD Pyrimidin 65.2 78 0.0017 27.4 9.9 29 342-370 60-94 (162)
167 PF02310 B12-binding: B12 bind 65.0 21 0.00046 28.7 6.1 43 11-53 1-43 (121)
168 cd07038 TPP_PYR_PDC_IPDC_like 63.9 83 0.0018 27.1 9.9 28 343-370 60-93 (162)
169 PRK10916 ADP-heptose:LPS hepto 63.7 34 0.00073 33.6 8.3 46 11-56 1-48 (348)
170 PRK10422 lipopolysaccharide co 63.5 42 0.00091 33.1 8.9 97 266-368 183-287 (352)
171 KOG1111 N-acetylglucosaminyltr 63.1 1.2E+02 0.0025 30.0 11.2 85 277-368 206-301 (426)
172 PRK10964 ADP-heptose:LPS hepto 62.4 41 0.00089 32.6 8.6 133 267-412 179-321 (322)
173 PF05159 Capsule_synth: Capsul 62.0 23 0.00049 33.4 6.5 42 326-370 185-226 (269)
174 PF12146 Hydrolase_4: Putative 61.1 17 0.00036 27.2 4.3 36 11-46 16-51 (79)
175 TIGR02095 glgA glycogen/starch 60.6 14 0.00031 38.1 5.2 39 11-49 1-45 (473)
176 PLN02470 acetolactate synthase 60.2 50 0.0011 35.2 9.3 90 272-369 2-109 (585)
177 COG1484 DnaC DNA replication p 60.1 17 0.00036 34.2 5.1 46 11-56 106-151 (254)
178 PF01210 NAD_Gly3P_dh_N: NAD-d 59.3 7 0.00015 33.6 2.3 32 12-48 1-32 (157)
179 COG0859 RfaF ADP-heptose:LPS h 59.0 35 0.00075 33.4 7.4 95 266-368 175-276 (334)
180 PRK14501 putative bifunctional 58.7 33 0.00071 37.7 7.8 111 328-454 346-463 (726)
181 COG2185 Sbm Methylmalonyl-CoA 58.4 16 0.00035 30.8 4.1 86 9-114 11-97 (143)
182 cd07035 TPP_PYR_POX_like Pyrim 58.2 99 0.0022 26.1 9.4 28 343-370 60-93 (155)
183 cd02070 corrinoid_protein_B12- 56.9 30 0.00065 31.1 6.0 44 10-53 82-125 (201)
184 PLN02316 synthase/transferase 56.5 10 0.00022 42.8 3.4 41 9-49 586-632 (1036)
185 PF14626 RNase_Zc3h12a_2: Zc3h 51.9 14 0.0003 29.9 2.6 31 24-54 9-39 (122)
186 PRK08305 spoVFB dipicolinate s 51.0 30 0.00065 31.0 4.9 42 10-51 5-46 (196)
187 PRK06718 precorrin-2 dehydroge 50.5 1.9E+02 0.0041 26.0 13.6 144 266-433 11-165 (202)
188 PRK06276 acetolactate synthase 49.5 86 0.0019 33.4 9.0 67 342-413 63-148 (586)
189 PRK14099 glycogen synthase; Pr 49.0 31 0.00067 35.8 5.4 37 10-48 3-47 (485)
190 cd01635 Glycosyltransferase_GT 48.8 25 0.00054 31.2 4.3 26 20-45 12-37 (229)
191 PRK07710 acetolactate synthase 48.8 78 0.0017 33.6 8.5 28 342-369 78-111 (571)
192 TIGR02370 pyl_corrinoid methyl 48.7 47 0.001 29.8 5.9 46 10-55 84-129 (197)
193 PRK06249 2-dehydropantoate 2-r 48.4 39 0.00084 32.7 5.7 34 10-48 5-38 (313)
194 cd02071 MM_CoA_mut_B12_BD meth 47.4 48 0.001 27.0 5.3 41 12-52 1-41 (122)
195 cd07025 Peptidase_S66 LD-Carbo 47.3 42 0.00092 32.0 5.7 75 278-371 45-121 (282)
196 PF04127 DFP: DNA / pantothena 47.2 20 0.00044 31.8 3.2 21 28-48 33-53 (185)
197 PRK10916 ADP-heptose:LPS hepto 47.0 32 0.0007 33.8 5.0 96 265-368 179-286 (348)
198 PF01975 SurE: Survival protei 46.8 33 0.00072 30.8 4.6 40 11-51 1-40 (196)
199 COG0801 FolK 7,8-dihydro-6-hyd 46.8 39 0.00085 29.1 4.7 36 268-303 3-38 (160)
200 PF00731 AIRC: AIR carboxylase 46.1 1.9E+02 0.0041 24.7 9.9 138 268-432 2-148 (150)
201 PRK08322 acetolactate synthase 45.3 1E+02 0.0022 32.4 8.8 67 342-413 63-148 (547)
202 PRK08335 translation initiatio 44.8 57 0.0012 31.0 6.0 19 99-117 202-220 (275)
203 cd03795 GT1_like_4 This family 44.3 33 0.00071 33.2 4.6 30 20-49 13-42 (357)
204 TIGR02852 spore_dpaB dipicolin 44.1 32 0.0007 30.6 4.0 39 12-50 2-40 (187)
205 PRK12921 2-dehydropantoate 2-r 43.9 41 0.00089 32.2 5.1 31 11-46 1-31 (305)
206 PRK06522 2-dehydropantoate 2-r 43.6 33 0.00071 32.8 4.4 31 11-46 1-31 (304)
207 COG0771 MurD UDP-N-acetylmuram 43.2 1.1E+02 0.0023 31.4 8.0 36 10-50 7-42 (448)
208 COG2159 Predicted metal-depend 42.7 1.6E+02 0.0036 28.2 9.0 84 254-352 116-202 (293)
209 PF10093 DUF2331: Uncharacteri 42.3 37 0.00081 33.7 4.4 87 277-367 190-287 (374)
210 TIGR00173 menD 2-succinyl-5-en 41.9 2.5E+02 0.0054 28.6 10.7 65 343-412 64-153 (432)
211 PRK07525 sulfoacetaldehyde ace 41.9 1.4E+02 0.0031 31.7 9.3 28 342-369 68-101 (588)
212 cd02069 methionine_synthase_B1 41.8 70 0.0015 29.1 5.9 44 10-53 88-131 (213)
213 PRK02155 ppnK NAD(+)/NADH kina 41.2 1.8E+02 0.004 27.8 9.0 57 337-414 60-120 (291)
214 TIGR00118 acolac_lg acetolacta 41.0 1.4E+02 0.0031 31.5 9.1 28 342-369 64-97 (558)
215 PRK10964 ADP-heptose:LPS hepto 40.8 45 0.00097 32.3 4.9 45 11-55 1-47 (322)
216 COG3349 Uncharacterized conser 40.8 27 0.00059 35.9 3.3 32 11-47 1-32 (485)
217 cd07062 Peptidase_S66_mccF_lik 40.4 60 0.0013 31.4 5.6 75 278-371 49-125 (308)
218 PRK06372 translation initiatio 40.3 70 0.0015 30.0 5.7 19 29-47 125-143 (253)
219 COG3195 Uncharacterized protei 40.1 1.1E+02 0.0023 26.5 6.2 95 333-431 64-164 (176)
220 PRK10422 lipopolysaccharide co 39.7 43 0.00094 32.9 4.7 46 10-55 5-52 (352)
221 PRK06732 phosphopantothenate-- 39.6 37 0.0008 31.3 3.8 34 268-301 152-186 (229)
222 PRK08155 acetolactate synthase 39.2 2.4E+02 0.0051 29.9 10.4 78 284-369 16-109 (564)
223 PRK06456 acetolactate synthase 38.8 1.2E+02 0.0025 32.3 8.0 28 342-369 68-101 (572)
224 TIGR00511 ribulose_e2b2 ribose 38.7 67 0.0014 31.0 5.6 19 99-117 208-226 (301)
225 PRK14569 D-alanyl-alanine synt 38.6 3.6E+02 0.0077 25.7 10.7 37 10-46 3-43 (296)
226 PRK14098 glycogen synthase; Pr 38.1 59 0.0013 33.8 5.5 38 9-48 4-49 (489)
227 PRK07313 phosphopantothenoylcy 38.1 48 0.001 29.3 4.2 41 11-52 2-42 (182)
228 PF08323 Glyco_transf_5: Starc 38.0 27 0.00058 32.5 2.7 23 26-48 21-43 (245)
229 smart00851 MGS MGS-like domain 38.0 94 0.002 23.6 5.4 28 27-56 2-29 (90)
230 PRK05920 aromatic acid decarbo 38.0 63 0.0014 29.2 4.9 44 10-54 3-46 (204)
231 COG2084 MmsB 3-hydroxyisobutyr 37.7 45 0.00098 31.8 4.2 32 11-47 1-32 (286)
232 KOG0853 Glycosyltransferase [C 37.7 33 0.00072 35.3 3.4 62 354-425 381-442 (495)
233 PLN02929 NADH kinase 37.5 1.8E+02 0.0039 28.0 8.2 99 279-414 31-138 (301)
234 PRK08229 2-dehydropantoate 2-r 37.2 58 0.0012 31.8 5.1 33 10-47 2-34 (341)
235 TIGR00725 conserved hypothetic 37.2 1E+02 0.0022 26.5 6.0 100 253-370 20-123 (159)
236 PRK08535 translation initiatio 36.9 69 0.0015 31.1 5.4 19 99-117 213-231 (310)
237 PRK08978 acetolactate synthase 36.8 1.5E+02 0.0033 31.1 8.5 28 343-370 64-97 (548)
238 cd03791 GT1_Glycogen_synthase_ 36.7 29 0.00063 35.6 3.0 29 19-49 16-44 (476)
239 PTZ00318 NADH dehydrogenase-li 36.3 45 0.00097 33.9 4.2 44 1-49 1-44 (424)
240 TIGR01470 cysG_Nterm siroheme 35.9 3.3E+02 0.0071 24.5 12.4 147 266-433 10-165 (205)
241 TIGR00421 ubiX_pad polyprenyl 35.8 49 0.0011 29.3 3.8 40 13-53 2-41 (181)
242 cd01840 SGNH_hydrolase_yrhL_li 35.6 89 0.0019 26.3 5.4 37 266-303 51-87 (150)
243 COG0297 GlgA Glycogen synthase 35.5 5.3E+02 0.011 26.8 15.5 166 268-454 294-478 (487)
244 PRK13982 bifunctional SbtC-lik 34.9 50 0.0011 34.1 4.2 39 10-48 256-306 (475)
245 PLN02939 transferase, transfer 34.7 71 0.0015 35.9 5.6 42 8-49 479-526 (977)
246 PF05225 HTH_psq: helix-turn-h 34.7 63 0.0014 21.2 3.3 26 399-427 1-27 (45)
247 PRK06725 acetolactate synthase 34.5 2E+02 0.0042 30.6 8.8 28 342-369 77-110 (570)
248 PRK06882 acetolactate synthase 34.5 2E+02 0.0043 30.5 8.9 28 342-369 67-100 (574)
249 PRK01231 ppnK inorganic polyph 34.4 2.1E+02 0.0045 27.6 8.1 55 339-414 61-119 (295)
250 PF09001 DUF1890: Domain of un 34.0 73 0.0016 26.6 4.2 34 23-56 12-45 (139)
251 KOG2941 Beta-1,4-mannosyltrans 33.9 4.8E+02 0.01 25.8 11.3 57 10-75 12-70 (444)
252 PRK05858 hypothetical protein; 33.8 2E+02 0.0044 30.2 8.8 27 343-369 68-100 (542)
253 TIGR01501 MthylAspMutase methy 33.8 1.2E+02 0.0027 25.2 5.7 43 10-52 1-43 (134)
254 PRK06048 acetolactate synthase 33.2 2.1E+02 0.0046 30.3 8.8 27 343-369 71-103 (561)
255 PF03446 NAD_binding_2: NAD bi 32.8 46 0.00099 28.7 3.2 30 11-45 2-31 (163)
256 PRK07979 acetolactate synthase 32.7 2.3E+02 0.005 30.1 9.1 28 342-369 67-100 (574)
257 COG4394 Uncharacterized protei 32.6 1.3E+02 0.0028 28.7 6.0 39 325-366 239-280 (370)
258 PRK13604 luxD acyl transferase 32.5 88 0.0019 30.2 5.2 35 10-44 36-70 (307)
259 cd03799 GT1_amsK_like This is 32.4 76 0.0016 30.5 5.1 26 23-48 13-38 (355)
260 PRK07236 hypothetical protein; 32.1 51 0.0011 32.8 3.8 36 1-45 1-36 (386)
261 CHL00072 chlL photochlorophyll 32.0 85 0.0018 30.1 5.1 38 11-48 1-38 (290)
262 cd02065 B12-binding_like B12 b 31.7 1.2E+02 0.0025 24.4 5.3 40 13-52 2-41 (125)
263 PRK14619 NAD(P)H-dependent gly 31.6 51 0.0011 31.8 3.6 32 10-46 4-35 (308)
264 PF02374 ArsA_ATPase: Anion-tr 31.6 76 0.0017 30.7 4.7 40 12-51 2-42 (305)
265 PRK14618 NAD(P)H-dependent gly 31.5 62 0.0013 31.5 4.2 33 10-47 4-36 (328)
266 TIGR03457 sulphoacet_xsc sulfo 31.4 2.6E+02 0.0057 29.7 9.2 28 342-369 64-97 (579)
267 TIGR03449 mycothiol_MshA UDP-N 31.2 55 0.0012 32.6 3.9 29 20-48 19-47 (405)
268 PRK08527 acetolactate synthase 31.0 2.4E+02 0.0053 29.8 8.9 28 342-369 66-99 (563)
269 PRK08199 thiamine pyrophosphat 31.0 2.6E+02 0.0057 29.5 9.1 28 342-369 71-104 (557)
270 PF01695 IstB_IS21: IstB-like 31.0 83 0.0018 27.6 4.5 46 10-55 47-92 (178)
271 COG2230 Cfa Cyclopropane fatty 30.7 29 0.00064 33.0 1.6 40 349-388 80-121 (283)
272 PF13450 NAD_binding_8: NAD(P) 30.7 61 0.0013 23.3 3.0 18 28-45 9-26 (68)
273 PRK12446 undecaprenyldiphospho 30.7 1.6E+02 0.0034 29.1 6.9 96 268-369 4-121 (352)
274 KOG1250 Threonine/serine dehyd 30.6 1.2E+02 0.0027 30.2 5.8 115 267-415 195-318 (457)
275 PRK06849 hypothetical protein; 30.5 99 0.0021 30.9 5.6 35 10-48 4-38 (389)
276 COG1797 CobB Cobyrinic acid a, 30.2 1.3E+02 0.0028 30.5 6.0 28 17-44 8-35 (451)
277 PF03721 UDPG_MGDP_dh_N: UDP-g 30.1 79 0.0017 28.0 4.2 39 11-56 1-39 (185)
278 COG2085 Predicted dinucleotide 30.0 1.1E+02 0.0023 27.8 5.0 35 11-50 2-36 (211)
279 PRK09620 hypothetical protein; 30.0 79 0.0017 29.1 4.3 26 20-47 27-52 (229)
280 PRK06029 3-octaprenyl-4-hydrox 29.8 97 0.0021 27.5 4.7 43 12-55 3-46 (185)
281 PRK06466 acetolactate synthase 29.7 3.5E+02 0.0077 28.7 9.8 27 343-369 68-100 (574)
282 PRK08979 acetolactate synthase 29.6 2.9E+02 0.0062 29.4 9.1 28 342-369 67-100 (572)
283 PRK14092 2-amino-4-hydroxy-6-h 29.4 1.2E+02 0.0026 26.3 5.1 32 264-295 5-36 (163)
284 TIGR02193 heptsyl_trn_I lipopo 29.4 74 0.0016 30.6 4.4 45 12-56 1-47 (319)
285 PRK11269 glyoxylate carboligas 29.1 1.7E+02 0.0038 31.1 7.4 27 343-369 69-101 (591)
286 PRK07524 hypothetical protein; 28.9 3.2E+02 0.0069 28.7 9.3 27 343-369 65-97 (535)
287 cd02034 CooC The accessory pro 28.8 1.3E+02 0.0028 24.3 4.9 37 12-48 1-37 (116)
288 PRK07282 acetolactate synthase 28.6 2.7E+02 0.0058 29.5 8.7 28 342-369 73-106 (566)
289 cd02032 Bchl_like This family 28.5 99 0.0021 29.0 4.9 36 11-46 1-36 (267)
290 cd03789 GT1_LPS_heptosyltransf 28.4 86 0.0019 29.5 4.5 45 12-56 1-47 (279)
291 TIGR00524 eIF-2B_rel eIF-2B al 28.4 86 0.0019 30.3 4.4 18 100-117 223-240 (303)
292 TIGR01281 DPOR_bchL light-inde 28.3 1E+02 0.0022 28.8 5.0 36 11-46 1-36 (268)
293 PRK11914 diacylglycerol kinase 28.0 3.3E+02 0.0072 26.0 8.6 81 268-370 12-96 (306)
294 PRK06719 precorrin-2 dehydroge 27.8 1.1E+02 0.0023 26.3 4.5 39 10-54 13-51 (157)
295 PF00070 Pyr_redox: Pyridine n 27.7 86 0.0019 23.0 3.5 22 27-48 11-32 (80)
296 PRK08266 hypothetical protein; 27.6 3.4E+02 0.0073 28.5 9.2 27 343-369 69-101 (542)
297 TIGR03026 NDP-sugDHase nucleot 27.6 79 0.0017 31.9 4.3 31 11-46 1-31 (411)
298 COG0041 PurE Phosphoribosylcar 27.6 4E+02 0.0086 22.9 12.3 141 268-434 4-152 (162)
299 PF04244 DPRP: Deoxyribodipyri 27.5 86 0.0019 28.8 4.1 25 23-47 47-71 (224)
300 PF01380 SIS: SIS domain SIS d 27.4 1.7E+02 0.0038 23.4 5.7 38 18-55 60-97 (131)
301 PF02780 Transketolase_C: Tran 27.4 1.1E+02 0.0023 24.8 4.4 35 10-46 9-43 (124)
302 COG2910 Putative NADH-flavin r 27.3 58 0.0013 28.9 2.7 32 11-46 1-32 (211)
303 COG1618 Predicted nucleotide k 27.2 1.5E+02 0.0032 25.9 5.1 37 10-46 5-42 (179)
304 PRK08617 acetolactate synthase 27.0 2.8E+02 0.0061 29.2 8.5 27 343-369 68-100 (552)
305 TIGR02699 archaeo_AfpA archaeo 26.9 1.1E+02 0.0024 26.8 4.5 31 22-52 10-42 (174)
306 PF02776 TPP_enzyme_N: Thiamin 26.9 1.4E+02 0.0031 25.7 5.3 28 343-370 65-98 (172)
307 PF01008 IF-2B: Initiation fac 26.4 85 0.0018 29.8 4.1 18 100-117 202-219 (282)
308 PF12695 Abhydrolase_5: Alpha/ 26.4 1.2E+02 0.0027 24.5 4.7 35 14-48 2-36 (145)
309 PF02702 KdpD: Osmosensitive K 26.3 1.2E+02 0.0025 27.5 4.5 38 10-47 5-42 (211)
310 PRK13933 stationary phase surv 26.3 2E+02 0.0044 26.9 6.4 24 27-51 16-39 (253)
311 TIGR02836 spore_IV_A stage IV 26.1 1.5E+02 0.0033 30.1 5.7 75 335-411 138-233 (492)
312 PRK06457 pyruvate dehydrogenas 26.1 3.8E+02 0.0083 28.2 9.3 27 343-369 65-97 (549)
313 KOG1209 1-Acyl dihydroxyaceton 25.9 1.2E+02 0.0025 27.8 4.4 39 1-45 1-39 (289)
314 PRK08939 primosomal protein Dn 25.9 1.1E+02 0.0023 29.7 4.6 47 10-56 156-202 (306)
315 TIGR01007 eps_fam capsular exo 25.9 1.3E+02 0.0029 26.7 5.1 39 10-48 16-56 (204)
316 COG4088 Predicted nucleotide k 25.9 91 0.002 28.3 3.7 36 11-46 2-37 (261)
317 PRK06835 DNA replication prote 25.9 1.2E+02 0.0026 29.7 5.0 45 11-55 184-228 (329)
318 TIGR02113 coaC_strep phosphopa 25.7 92 0.002 27.4 3.8 40 12-52 2-41 (177)
319 TIGR00087 surE 5'/3'-nucleotid 25.7 1.9E+02 0.0041 27.0 6.1 24 27-51 16-39 (244)
320 COG0240 GpsA Glycerol-3-phosph 25.5 94 0.002 30.3 4.1 31 11-46 2-32 (329)
321 PRK07586 hypothetical protein; 25.5 4.1E+02 0.0088 27.7 9.3 28 343-370 65-98 (514)
322 KOG2941 Beta-1,4-mannosyltrans 25.4 2.4E+02 0.0051 27.9 6.6 130 264-412 252-404 (444)
323 PF09314 DUF1972: Domain of un 25.2 1.2E+02 0.0027 26.9 4.5 46 21-74 16-62 (185)
324 PLN02275 transferase, transfer 25.2 2.1E+02 0.0046 28.2 6.8 58 11-75 5-63 (371)
325 COG2894 MinD Septum formation 25.1 1.3E+02 0.0029 27.6 4.6 35 12-46 3-39 (272)
326 PRK07064 hypothetical protein; 25.1 4E+02 0.0086 28.0 9.2 28 342-369 66-99 (544)
327 COG2120 Uncharacterized protei 25.1 1.5E+02 0.0032 27.5 5.3 37 10-46 10-46 (237)
328 PF09547 Spore_IV_A: Stage IV 25.0 1.5E+02 0.0033 30.1 5.4 73 337-411 141-233 (492)
329 COG1817 Uncharacterized protei 24.9 4.7E+02 0.01 25.4 8.4 104 252-369 168-278 (346)
330 PRK00652 lpxK tetraacyldisacch 24.8 1.5E+02 0.0032 29.0 5.4 39 10-48 49-89 (325)
331 PF02826 2-Hacid_dh_C: D-isome 24.8 3.1E+02 0.0066 23.9 7.1 102 266-408 37-142 (178)
332 PF06506 PrpR_N: Propionate ca 24.7 36 0.00078 29.8 1.1 31 341-372 33-63 (176)
333 TIGR02700 flavo_MJ0208 archaeo 24.7 1.3E+02 0.0028 27.8 4.7 42 13-54 2-45 (234)
334 PF02558 ApbA: Ketopantoate re 24.7 1.2E+02 0.0026 25.3 4.4 39 13-56 1-39 (151)
335 cd03412 CbiK_N Anaerobic cobal 24.6 1.2E+02 0.0026 24.9 4.1 37 267-303 2-40 (127)
336 CHL00099 ilvB acetohydroxyacid 24.6 2.6E+02 0.0057 29.7 7.7 29 342-370 76-110 (585)
337 COG3140 Uncharacterized protei 24.4 2.4E+02 0.0053 19.4 4.8 36 419-458 13-48 (60)
338 KOG3446 NADH:ubiquinone oxidor 24.4 1.8E+02 0.004 22.0 4.5 44 364-412 51-95 (97)
339 PF07991 IlvN: Acetohydroxy ac 24.4 1.2E+02 0.0027 26.2 4.2 35 10-49 4-38 (165)
340 PRK06965 acetolactate synthase 24.2 3.8E+02 0.0082 28.5 8.9 29 342-370 84-118 (587)
341 PF10933 DUF2827: Protein of u 24.2 4.6E+02 0.0099 26.0 8.4 103 325-451 254-363 (364)
342 cd03786 GT1_UDP-GlcNAc_2-Epime 24.1 1.3E+02 0.0027 29.4 5.0 35 12-47 1-36 (363)
343 PRK11380 hypothetical protein; 24.1 2.3E+02 0.0051 27.7 6.3 74 334-421 117-202 (353)
344 PRK14620 NAD(P)H-dependent gly 24.0 83 0.0018 30.5 3.6 31 11-46 1-31 (326)
345 COG0299 PurN Folate-dependent 23.8 3.7E+02 0.008 24.1 7.1 104 283-410 67-172 (200)
346 TIGR02195 heptsyl_trn_II lipop 23.7 1.1E+02 0.0023 29.8 4.3 45 12-56 1-47 (334)
347 PRK04148 hypothetical protein; 23.6 1.6E+02 0.0035 24.6 4.6 31 10-46 17-47 (134)
348 PRK06270 homoserine dehydrogen 23.6 5E+02 0.011 25.4 9.0 58 333-391 80-149 (341)
349 PF07015 VirC1: VirC1 protein; 23.5 2.2E+02 0.0047 26.3 5.8 43 13-55 4-47 (231)
350 PRK05876 short chain dehydroge 23.5 1.4E+02 0.003 28.0 5.0 31 12-45 7-37 (275)
351 TIGR02201 heptsyl_trn_III lipo 23.3 1E+02 0.0022 30.1 4.1 45 12-56 1-47 (344)
352 TIGR00745 apbA_panE 2-dehydrop 23.2 1.1E+02 0.0024 28.9 4.2 19 29-47 5-23 (293)
353 PF09334 tRNA-synt_1g: tRNA sy 23.0 72 0.0016 32.1 3.0 30 19-48 14-46 (391)
354 PRK05282 (alpha)-aspartyl dipe 23.0 4.2E+02 0.0091 24.5 7.8 46 254-301 22-67 (233)
355 TIGR00521 coaBC_dfp phosphopan 23.0 1.3E+02 0.0029 30.2 4.8 44 10-54 3-46 (390)
356 PF00289 CPSase_L_chain: Carba 22.9 1.2E+02 0.0026 24.3 3.7 69 280-358 10-88 (110)
357 COG0569 TrkA K+ transport syst 22.7 99 0.0022 28.3 3.6 31 11-46 1-31 (225)
358 TIGR00288 conserved hypothetic 22.7 2.6E+02 0.0056 24.2 5.8 40 12-56 108-148 (160)
359 PF05673 DUF815: Protein of un 22.7 6.4E+02 0.014 23.6 10.3 138 283-453 93-247 (249)
360 PRK14077 pnk inorganic polypho 22.7 2.3E+02 0.0049 27.2 6.1 58 336-414 60-121 (287)
361 PF12689 Acid_PPase: Acid Phos 22.6 1.4E+02 0.0031 26.0 4.3 47 360-409 119-165 (169)
362 cd03416 CbiX_SirB_N Sirohydroc 22.6 2.4E+02 0.0051 21.7 5.4 34 268-301 2-37 (101)
363 PF10727 Rossmann-like: Rossma 22.5 1.8E+02 0.004 23.9 4.8 37 8-49 8-44 (127)
364 PF03720 UDPG_MGDP_dh_C: UDP-g 22.5 1E+02 0.0023 24.3 3.3 36 20-55 10-47 (106)
365 PRK04539 ppnK inorganic polyph 22.3 2.5E+02 0.0055 27.0 6.4 57 337-414 65-125 (296)
366 PRK10637 cysG siroheme synthas 22.2 8.6E+02 0.019 24.9 11.1 151 259-434 7-169 (457)
367 PRK06935 2-deoxy-D-gluconate 3 22.2 2.2E+02 0.0048 26.1 6.0 34 11-47 15-48 (258)
368 KOG0202 Ca2+ transporting ATPa 22.2 5.6E+02 0.012 28.5 9.2 169 267-454 572-750 (972)
369 TIGR03837 efp_adjacent_2 conse 22.1 1.9E+02 0.0041 28.7 5.4 89 275-366 186-284 (371)
370 TIGR03845 sulfopyru_alph sulfo 22.0 2.7E+02 0.0058 23.8 5.9 29 344-372 61-94 (157)
371 TIGR00512 salvage_mtnA S-methy 21.9 1.6E+02 0.0035 28.8 5.0 19 99-117 250-268 (331)
372 cd01983 Fer4_NifH The Fer4_Nif 21.9 2.1E+02 0.0046 21.0 5.0 33 13-45 2-34 (99)
373 TIGR00236 wecB UDP-N-acetylglu 21.9 2.3E+02 0.005 27.8 6.4 44 11-55 1-45 (365)
374 COG0162 TyrS Tyrosyl-tRNA synt 21.7 1E+02 0.0022 31.1 3.6 35 12-47 36-73 (401)
375 PLN02350 phosphogluconate dehy 21.7 86 0.0019 32.6 3.3 32 10-46 6-37 (493)
376 cd03115 SRP The signal recogni 21.7 2.4E+02 0.0051 24.2 5.7 38 13-50 3-40 (173)
377 TIGR01915 npdG NADPH-dependent 21.6 1E+02 0.0022 28.0 3.4 31 11-46 1-32 (219)
378 KOG0100 Molecular chaperones G 21.6 2.1E+02 0.0046 28.7 5.6 52 360-411 498-553 (663)
379 PRK09922 UDP-D-galactose:(gluc 21.5 1.6E+02 0.0034 28.8 5.1 38 11-48 1-43 (359)
380 PF05014 Nuc_deoxyrib_tr: Nucl 21.5 3.2E+02 0.0069 21.6 6.0 94 269-374 1-101 (113)
381 PF06180 CbiK: Cobalt chelatas 21.4 1.2E+02 0.0025 28.7 3.8 39 267-305 2-43 (262)
382 PRK13935 stationary phase surv 21.4 2.6E+02 0.0056 26.2 6.0 24 27-51 16-39 (253)
383 PRK11064 wecC UDP-N-acetyl-D-m 21.3 1.3E+02 0.0028 30.5 4.4 32 10-46 3-34 (415)
384 COG2327 WcaK Polysaccharide py 21.3 3E+02 0.0066 27.5 6.7 72 335-415 280-352 (385)
385 PRK07418 acetolactate synthase 21.2 4.1E+02 0.0088 28.5 8.4 28 342-369 85-118 (616)
386 COG1255 Uncharacterized protei 21.2 98 0.0021 25.1 2.7 83 10-114 14-101 (129)
387 PF02737 3HCDH_N: 3-hydroxyacy 21.1 84 0.0018 27.6 2.7 32 12-48 1-32 (180)
388 PRK06129 3-hydroxyacyl-CoA deh 20.9 1E+02 0.0022 29.7 3.5 32 11-47 3-34 (308)
389 COG0665 DadA Glycine/D-amino a 20.8 1.1E+02 0.0023 30.3 3.7 32 10-46 4-35 (387)
390 PLN02935 Bifunctional NADH kin 20.8 1.8E+02 0.0039 30.2 5.2 55 339-414 261-319 (508)
391 PRK06546 pyruvate dehydrogenas 20.7 5.4E+02 0.012 27.3 9.1 28 343-370 67-100 (578)
392 PF05762 VWA_CoxE: VWA domain 20.6 2.1E+02 0.0046 26.1 5.3 38 10-47 150-188 (222)
393 COG3340 PepE Peptidase E [Amin 20.6 6.6E+02 0.014 23.0 8.2 46 255-301 23-68 (224)
394 PF05693 Glycogen_syn: Glycoge 20.5 1.3E+02 0.0028 31.9 4.2 95 333-430 462-566 (633)
395 cd01075 NAD_bind_Leu_Phe_Val_D 20.5 1.3E+02 0.0028 27.0 3.8 31 10-45 28-58 (200)
396 COG3660 Predicted nucleoside-d 20.5 7.5E+02 0.016 23.5 9.7 72 287-368 189-271 (329)
397 KOG3062 RNA polymerase II elon 20.4 2.1E+02 0.0045 26.5 4.9 34 11-44 2-36 (281)
398 COG1703 ArgK Putative periplas 20.4 2.2E+02 0.0047 27.5 5.3 39 10-48 51-89 (323)
399 PRK13869 plasmid-partitioning 20.3 1.7E+02 0.0036 29.6 4.9 38 10-47 120-159 (405)
400 PF06792 UPF0261: Uncharacteri 20.2 5.1E+02 0.011 26.1 8.1 96 264-375 183-283 (403)
401 PRK13054 lipid kinase; Reviewe 20.2 5.6E+02 0.012 24.4 8.5 78 268-370 7-92 (300)
402 PRK05708 2-dehydropantoate 2-r 20.1 97 0.0021 29.8 3.1 33 10-47 2-34 (305)
403 PF13460 NAD_binding_10: NADH( 20.0 1.3E+02 0.0029 25.8 3.8 29 18-48 4-32 (183)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-68 Score=538.17 Aligned_cols=412 Identities=35% Similarity=0.641 Sum_probs=326.3
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCC-CCCC---
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASS-DESP--- 85 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~-~~~~--- 85 (465)
++||+++|||++||++||++||+.|+.+|+.|||++++.+... .. ....+++|..+|+++|+.. +...
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~------~~~~~i~~~~ip~glp~~~~~~~~~~~ 78 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS------DDFTDFQFVTIPESLPESDFKNLGPIE 78 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc------cCCCCeEEEeCCCCCCcccccccCHHH
Confidence 7899999999999999999999999999999999999877421 10 1123699999998877531 0100
Q ss_pred ----cc-----------cCC------C-C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcCc-CCC
Q 012342 86 ----TA-----------QDA------Y-S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGL-FPV 139 (465)
Q Consensus 86 ----~~-----------~~~------~-~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~-~P~ 139 (465)
.. ..+ + . +|++++|+.++|+++|||+++|++++++..+..+++..+...+. .|.
T Consensus 79 ~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~ 158 (451)
T PLN02410 79 FLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPL 158 (451)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCc
Confidence 00 000 1 0 99999999999999999999999999999887776544332221 232
Q ss_pred CCcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHhccCC
Q 012342 140 KDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALSFMFP 219 (465)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~p 219 (465)
.... .+... .+|++++++..+++..... .......++... ....+++++++|||++||+.++++++...+
T Consensus 159 ~~~~------~~~~~-~iPg~~~~~~~dlp~~~~~--~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~ 228 (451)
T PLN02410 159 KEPK------GQQNE-LVPEFHPLRCKDFPVSHWA--SLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQ 228 (451)
T ss_pred cccc------cCccc-cCCCCCCCChHHCcchhcC--CcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccC
Confidence 2110 01122 3788888777777754321 112222222222 234678999999999999999999988766
Q ss_pred CceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEE
Q 012342 220 HHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFL 299 (465)
Q Consensus 220 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l 299 (465)
+++++|||++...+. +.+++..+.+|.+|||.+++++||||||||....+.+++.+++.+|+.++.+||
T Consensus 229 ~~v~~vGpl~~~~~~-----------~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~Fl 297 (451)
T PLN02410 229 IPVYPIGPLHLVASA-----------PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFL 297 (451)
T ss_pred CCEEEecccccccCC-----------CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeE
Confidence 569999999753210 112222345689999999989999999999999999999999999999999999
Q ss_pred EEEcCCCCC--CCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhH
Q 012342 300 WIIRPDLVT--GETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTN 377 (465)
Q Consensus 300 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~n 377 (465)
|+++.+... +....+|++|.+++++|+++++|+||.+||+|+++|+|||||||||++||+++|||||++|+++||+.|
T Consensus 298 Wv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n 377 (451)
T PLN02410 298 WVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVN 377 (451)
T ss_pred EEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHH
Confidence 999853211 111247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Q 012342 378 GRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 453 (465)
Q Consensus 378 a~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 453 (465)
|+++++.||+|+.+. +.+++++|+++|+++|.+++|++||+||+++++++++++.+||||.+++++||+.+..
T Consensus 378 a~~~~~~~~~G~~~~---~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 378 ARYLECVWKIGIQVE---GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHhCeeEEeC---CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999977789999996 5789999999999999888788999999999999999999999999999999998864
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.5e-68 Score=538.15 Aligned_cols=435 Identities=32% Similarity=0.614 Sum_probs=336.0
Q ss_pred CCCCCCCCCCCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcC-C---CCCCCCCeeEEeCCCC
Q 012342 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQ-H---SLDGLPSFRFEAIPDG 76 (465)
Q Consensus 1 m~~~~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~-~---~~~~~~~i~f~~l~~~ 76 (465)
|+|-+. ++||+++|+|++||++||+.||+.|+.+|..|||++++.+..++.+.... . .......++|..+|++
T Consensus 1 ~~~~~~---~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdg 77 (480)
T PLN02555 1 MESESS---LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDG 77 (480)
T ss_pred CCCCCC---CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCC
Confidence 555442 78999999999999999999999999999999999999877766531100 0 0011234778777777
Q ss_pred CCCCCCCCCc-------c------------c-----CCC-C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhh
Q 012342 77 LPASSDESPT-------A------------Q-----DAY-S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQF 128 (465)
Q Consensus 77 ~~~~~~~~~~-------~------------~-----~~~-~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~ 128 (465)
+++..+.... . . .-+ . +|++++|+.++|+++|||+++|++++++..+..+++
T Consensus 78 lp~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~ 157 (480)
T PLN02555 78 WAEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHY 157 (480)
T ss_pred CCCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHH
Confidence 7643110000 0 0 001 1 999999999999999999999999999988877665
Q ss_pred hhhhhcCcCCCCCcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhH
Q 012342 129 QTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQ 208 (465)
Q Consensus 129 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~ 208 (465)
+ .+..|+.... +.+..+ .+|+++.++..+++.++..........+.+.+..+...+++++++|||++||+
T Consensus 158 ~----~~~~~~~~~~-----~~~~~~-~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~ 227 (480)
T PLN02555 158 Y----HGLVPFPTET-----EPEIDV-QLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEK 227 (480)
T ss_pred h----hcCCCccccc-----CCCcee-ecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhH
Confidence 3 2222322110 011123 38999888888998765422222333444445556677889999999999999
Q ss_pred HHHHHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHH
Q 012342 209 QVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVA 288 (465)
Q Consensus 209 ~~~~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~ 288 (465)
.++++++... + ++.|||+......... ..+.+.+..+++|.+|||.++++++|||||||+...+.+++.+++
T Consensus 228 ~~~~~l~~~~-~-v~~iGPl~~~~~~~~~------~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela 299 (480)
T PLN02555 228 EIIDYMSKLC-P-IKPVGPLFKMAKTPNS------DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIA 299 (480)
T ss_pred HHHHHHhhCC-C-EEEeCcccCccccccc------cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHH
Confidence 9999987744 4 9999999743211000 111122334567999999998889999999999989999999999
Q ss_pred HHHHhCCCCEEEEEcCCCCC--CCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEE
Q 012342 289 MGLVNSNHPFLWIIRPDLVT--GETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMI 366 (465)
Q Consensus 289 ~al~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i 366 (465)
.+|+.++++|||+++..... .+...+|+++.+++++|+++++|+||.+||.|+++++|||||||||++||+++|||||
T Consensus 300 ~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l 379 (480)
T PLN02555 300 YGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVV 379 (480)
T ss_pred HHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEE
Confidence 99999999999998743111 1123478889888889999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHhhcccceeEEEEecC---CCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 012342 367 CWPFTGDQPTNGRYVCNEWGVGMEINGD---DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLN 443 (465)
Q Consensus 367 ~~P~~~DQ~~na~~~~~~~g~g~~~~~~---~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 443 (465)
++|+++||+.||++++++||+|+++... ++.+++++|.++|+++|.+++|+++|+||++|++++++|+.+||||..+
T Consensus 380 ~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~ 459 (480)
T PLN02555 380 CFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRN 459 (480)
T ss_pred eCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999999999999997788999999421 0468999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 012342 444 LDKLVNEILLSNK 456 (465)
Q Consensus 444 ~~~~~~~~~~~~~ 456 (465)
+++||+++.....
T Consensus 460 l~~~v~~i~~~~~ 472 (480)
T PLN02555 460 FQEFVDKLVRKSV 472 (480)
T ss_pred HHHHHHHHHhccc
Confidence 9999999987643
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.8e-67 Score=527.83 Aligned_cols=412 Identities=27% Similarity=0.507 Sum_probs=320.6
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCC-CC-C--
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSD-ES-P-- 85 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~-~~-~-- 85 (465)
++||+++|||++||++||++||+.|+.+|++|||+|++.+..++.+... ..++++|+.+|++++.... +. .
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~-----~~~~i~~v~lp~g~~~~~~~~~~~l~ 80 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD-----PKLGITFMSISDGQDDDPPRDFFSIE 80 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC-----CCCCEEEEECCCCCCCCccccHHHHH
Confidence 7899999999999999999999999999999999999998877665421 1136999999987653200 00 0
Q ss_pred -cc------------cCC----C--C--CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcCcCCCCCccc
Q 012342 86 -TA------------QDA----Y--S--LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKDKSC 144 (465)
Q Consensus 86 -~~------------~~~----~--~--~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 144 (465)
.. ..+ + . +|++++|+.++|+++|||+++|+++++...+..++++.....+..+.....
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 159 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCP- 159 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccc-
Confidence 00 000 0 0 899999999999999999999999998887776665543322222211000
Q ss_pred ccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHhc-----cCC
Q 012342 145 LTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALSF-----MFP 219 (465)
Q Consensus 145 ~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~-----~~p 219 (465)
.....+..+|+++.++.++++.++............+.+..+...+++++++|||++||+.+++..+. ..|
T Consensus 160 ----~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~ 235 (448)
T PLN02562 160 ----RQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNP 235 (448)
T ss_pred ----ccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCC
Confidence 00112334789888888888876533221222334445555667788999999999999998887653 234
Q ss_pred CceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeecccc-CCCHHHHHHHHHHHHhCCCCE
Q 012342 220 HHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFI-FMNKQQLIEVAMGLVNSNHPF 298 (465)
Q Consensus 220 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~~~~al~~~~~~~ 298 (465)
+ ++.|||++...... ....+.+..+.+|.+|||+++++++|||||||+. ..+.+++.+++.+|+.+|++|
T Consensus 236 ~-v~~iGpl~~~~~~~--------~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~f 306 (448)
T PLN02562 236 Q-ILQIGPLHNQEATT--------ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPF 306 (448)
T ss_pred C-EEEecCcccccccc--------cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCE
Confidence 4 99999997532110 0011122345678899999988899999999986 678899999999999999999
Q ss_pred EEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHH
Q 012342 299 LWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNG 378 (465)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na 378 (465)
||+++.+. ...+++++.+++++|+++++|+||.+||+|+++|+|||||||||++||+++|||+|++|+++||+.||
T Consensus 307 iW~~~~~~----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na 382 (448)
T PLN02562 307 IWVLNPVW----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNC 382 (448)
T ss_pred EEEEcCCc----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHH
Confidence 99997531 11378899888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 012342 379 RYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEIL 452 (465)
Q Consensus 379 ~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 452 (465)
+++++.+|+|+.+ +.+++++|.++|+++|.|++ ||+||++++++++++ ++||||.+++++||++++
T Consensus 383 ~~~~~~~g~g~~~----~~~~~~~l~~~v~~~l~~~~---~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 383 AYIVDVWKIGVRI----SGFGQKEVEEGLRKVMEDSG---MGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHHHhCceeEe----CCCCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 9996668999888 45799999999999998876 999999999999876 678999999999999873
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-66 Score=521.91 Aligned_cols=409 Identities=31% Similarity=0.563 Sum_probs=317.9
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCC-CCCCc--
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASS-DESPT-- 86 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~-~~~~~-- 86 (465)
++||+++|||++||++||++||+.|+.+|+.|||++++.+...+... ..++++|+.+|+++++.. +....
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~~i~~~~ipdglp~~~~~~~~~~~ 77 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSSPISIATISDGYDQGGFSSAGSVP 77 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCCCEEEEEcCCCCCCcccccccCHH
Confidence 67999999999999999999999999999999999999876554321 113599999998887631 00000
Q ss_pred -----------------ccCC-----C-C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcCcCCCC
Q 012342 87 -----------------AQDA-----Y-S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVK 140 (465)
Q Consensus 87 -----------------~~~~-----~-~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 140 (465)
...+ + . +|++++|+.++|+++|||++.|++++++....++.. .. ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~-~~~----- 150 (449)
T PLN02173 78 EYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YI-NNG----- 150 (449)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hh-ccC-----
Confidence 0000 0 0 899999999999999999999999888877654432 11 000
Q ss_pred CcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHhccCCC
Q 012342 141 DKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALSFMFPH 220 (465)
Q Consensus 141 ~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~p~ 220 (465)
+ ..+. +|+++.++..+++.++............+.+..+...+++++++|||++||+.++++++.. ++
T Consensus 151 --------~--~~~~-~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-~~ 218 (449)
T PLN02173 151 --------S--LTLP-IKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-CP 218 (449)
T ss_pred --------C--ccCC-CCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-CC
Confidence 0 0122 6888878888888766432222233343444456677899999999999999999998764 44
Q ss_pred ceeeecccccccccchhhccccccCCCCCc--cchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCE
Q 012342 221 HLFTIGPLQLLLNQTEEQDGMLNSIGYNLL--KEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPF 298 (465)
Q Consensus 221 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 298 (465)
++.|||++.........+.. .....+.| ..++.|.+|||.++++++|||||||....+.+++.+++.+| ++.+|
T Consensus 219 -v~~VGPl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~f 294 (449)
T PLN02173 219 -VLTIGPTVPSMYLDQQIKSD-NDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSY 294 (449)
T ss_pred -eeEEcccCchhhcccccccc-ccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCE
Confidence 99999996321000000000 00011222 23456999999999999999999999989999999999999 78899
Q ss_pred EEEEcCCCCCCCcCCCchhHHHHh-ccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhH
Q 012342 299 LWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTN 377 (465)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~n 377 (465)
||+++... ...+|+++.+++ ++|+++++|+||.+||+|+++|+|||||||||++|++++|||||+||+++||+.|
T Consensus 295 lWvvr~~~----~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~N 370 (449)
T PLN02173 295 LWVVRASE----ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMN 370 (449)
T ss_pred EEEEeccc----hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHH
Confidence 99998532 123788888877 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccceeEEEEecCC--CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 012342 378 GRYVCNEWGVGMEINGDD--EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEIL 452 (465)
Q Consensus 378 a~~~~~~~g~g~~~~~~~--~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 452 (465)
|+++++.||+|+.+...+ ..++.++|+++|+++|.+++|+++|+||+++++++++++++||||.+++++|++.+.
T Consensus 371 a~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 371 AKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 999977789999986421 236999999999999998888899999999999999999999999999999999874
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.2e-66 Score=524.47 Aligned_cols=428 Identities=25% Similarity=0.410 Sum_probs=320.8
Q ss_pred CCCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCC----CCCCCCCCC
Q 012342 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD----GLPASSDES 84 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~----~~~~~~~~~ 84 (465)
+++||+++|||++||++||++||+.|+.+|+.|||++++.+..++.+... ..++++++.+|. +++++.++.
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~-----~~~~i~~~~lp~P~~~~lPdG~~~~ 82 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS-----KHPSIETLVLPFPSHPSIPSGVENV 82 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc-----cCCCeeEEeCCCCCcCCCCCCCcCh
Confidence 38999999999999999999999999999999999999999877765421 112466655431 232221000
Q ss_pred -CcccC----------------------C--C-C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcC
Q 012342 85 -PTAQD----------------------A--Y-S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKG 135 (465)
Q Consensus 85 -~~~~~----------------------~--~-~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (465)
....+ . + . +|++++|+.++|+++|||+++|++++++.++.++++....
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~--- 159 (477)
T PLN02863 83 KDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM--- 159 (477)
T ss_pred hhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc---
Confidence 00000 0 0 0 9999999999999999999999999999998887764321
Q ss_pred cCCCCCcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHh
Q 012342 136 LFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALS 215 (465)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~ 215 (465)
|..... .+.+....+..+|+++.++..+++.++............+.+.......++++++|||++||+.++++++
T Consensus 160 --~~~~~~--~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 235 (477)
T PLN02863 160 --PTKINP--DDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLK 235 (477)
T ss_pred --cccccc--cccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHH
Confidence 211000 0000011223478888888888887654322222233344444444567788999999999999999998
Q ss_pred ccCC-CceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhC
Q 012342 216 FMFP-HHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNS 294 (465)
Q Consensus 216 ~~~p-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~ 294 (465)
..+. ++++.|||++........ .. ..+.+.+..++++.+|||.++++++|||||||+...+.+++.+++.+|+.+
T Consensus 236 ~~~~~~~v~~IGPL~~~~~~~~~--~~--~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~ 311 (477)
T PLN02863 236 KELGHDRVWAVGPILPLSGEKSG--LM--ERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKS 311 (477)
T ss_pred hhcCCCCeEEeCCCccccccccc--cc--ccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhC
Confidence 8653 359999999743211000 00 011111113467999999999899999999999988999999999999999
Q ss_pred CCCEEEEEcCCCCC-CCcCCCchhHHHHhccCc-eEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCC
Q 012342 295 NHPFLWIIRPDLVT-GETADLPAEFEVKAKEKG-FVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTG 372 (465)
Q Consensus 295 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~ 372 (465)
+.+|||+++..... .....+|++|.+++.+++ ++.+|+||.+||+|+++++|||||||||++||+++|||+|++|+++
T Consensus 312 ~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 391 (477)
T PLN02863 312 GVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAA 391 (477)
T ss_pred CCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccc
Confidence 99999999853221 112347888888775544 4569999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhcccceeEEEEecCC-CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 012342 373 DQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 451 (465)
Q Consensus 373 DQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 451 (465)
||+.||+++++++|+|+++..+. ..++.+++.++|+++|.+ +++||+||+++++.+++|+.+||||.+++++||+.+
T Consensus 392 DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i 469 (477)
T PLN02863 392 DQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHV 469 (477)
T ss_pred cchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 99999999867899999995311 346899999999999942 346999999999999999999999999999999999
Q ss_pred Hhc
Q 012342 452 LLS 454 (465)
Q Consensus 452 ~~~ 454 (465)
...
T Consensus 470 ~~~ 472 (477)
T PLN02863 470 VEL 472 (477)
T ss_pred HHh
Confidence 765
No 6
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3.3e-66 Score=522.80 Aligned_cols=424 Identities=29% Similarity=0.528 Sum_probs=323.4
Q ss_pred CCCCCCCCCCCEEEEEcCCCCccHHHHHHHHHH--HHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCC
Q 012342 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKL--LHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLP 78 (465)
Q Consensus 1 m~~~~~~~~~~~il~~~~~~~GH~~P~l~La~~--L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~ 78 (465)
|+++.+ +++||+++|+|++||++|+++||+. |++||++|||++++.+.+++.... .....+++..+|++++
T Consensus 1 ~~~~~~--~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-----~~~~~~~~~~~~~glp 73 (456)
T PLN02210 1 MGSSEG--QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-----KPRRPVDLVFFSDGLP 73 (456)
T ss_pred CCCcCC--CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-----CCCCceEEEECCCCCC
Confidence 655543 3789999999999999999999999 569999999999999877664321 1124578887887777
Q ss_pred CCCCCCCcccC----------------C---C-C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcC
Q 012342 79 ASSDESPTAQD----------------A---Y-S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKG 135 (465)
Q Consensus 79 ~~~~~~~~~~~----------------~---~-~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (465)
+. ....... + . . +|.+++|+..+|+++|||+++|++.++..++..+++... .
T Consensus 74 ~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~- 148 (456)
T PLN02210 74 KD--DPRAPETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--T- 148 (456)
T ss_pred CC--cccCHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--c-
Confidence 54 1110000 0 0 0 999999999999999999999999999888876654321 1
Q ss_pred cCCCCCcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHh
Q 012342 136 LFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALS 215 (465)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~ 215 (465)
.+..... +.+..+ .+|+++.++..+++.++.... .........+..+....++++++||+++||++++++++
T Consensus 149 -~~~~~~~-----~~~~~~-~~Pgl~~~~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 220 (456)
T PLN02210 149 -NSFPDLE-----DLNQTV-ELPALPLLEVRDLPSFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMA 220 (456)
T ss_pred -CCCCccc-----ccCCee-eCCCCCCCChhhCChhhhcCC-chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHh
Confidence 1111110 111122 378888778888886554321 11122233344445567899999999999999999988
Q ss_pred ccCCCceeeeccccccc--ccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHh
Q 012342 216 FMFPHHLFTIGPLQLLL--NQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVN 293 (465)
Q Consensus 216 ~~~p~~v~~vGpl~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~ 293 (465)
.. + ++++|||++... +.... ........++|..+++|.+|||.++++++|||||||....+.+++.+++.+|+.
T Consensus 221 ~~-~-~v~~VGPl~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~ 296 (456)
T PLN02210 221 DL-K-PVIPIGPLVSPFLLGDDEE--ETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKN 296 (456)
T ss_pred hc-C-CEEEEcccCchhhcCcccc--cccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 73 4 499999997421 10000 000001112344567899999999889999999999988899999999999999
Q ss_pred CCCCEEEEEcCCCCCCCcCCCchhHHHHh-ccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCC
Q 012342 294 SNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTG 372 (465)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~ 372 (465)
++.+|||+++..... ..+.++.++. ++++++++|+||.+||+|+++|+|||||||||++|++++|||+|+||+++
T Consensus 297 ~~~~flw~~~~~~~~----~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~ 372 (456)
T PLN02210 297 RGVPFLWVIRPKEKA----QNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWT 372 (456)
T ss_pred CCCCEEEEEeCCccc----cchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 999999999853211 1234555555 47888999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhcccceeEEEEecCC--CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 012342 373 DQPTNGRYVCNEWGVGMEINGDD--EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNE 450 (465)
Q Consensus 373 DQ~~na~~~~~~~g~g~~~~~~~--~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 450 (465)
||+.||+++++++|+|+.+...+ +.+++++|+++|+++|.+++|++||+||++|++.+++|+++||||.+++++||+.
T Consensus 373 DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~ 452 (456)
T PLN02210 373 DQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISD 452 (456)
T ss_pred ccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999999955699999996410 3689999999999999888888999999999999999999999999999999998
Q ss_pred HH
Q 012342 451 IL 452 (465)
Q Consensus 451 ~~ 452 (465)
+.
T Consensus 453 ~~ 454 (456)
T PLN02210 453 IT 454 (456)
T ss_pred Hh
Confidence 85
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.5e-66 Score=523.93 Aligned_cols=421 Identities=27% Similarity=0.470 Sum_probs=323.5
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCC----CCCCCCCCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD----GLPASSDES 84 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~-~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~----~~~~~~~~~ 84 (465)
++||+++|||++||++||++||+.|+ ++|++|||++++.+..++.+... ..++++++.+|. ++++...+.
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~-----~~~~i~~~~lp~p~~~glp~~~~~~ 79 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL-----NSTGVDIVGLPSPDISGLVDPSAHV 79 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc-----cCCCceEEECCCccccCCCCCCccH
Confidence 88999999999999999999999998 78999999999988766533311 112588888874 443110000
Q ss_pred C-----cc-----------cCC--C-C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcCcCCCCCc
Q 012342 85 P-----TA-----------QDA--Y-S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKDK 142 (465)
Q Consensus 85 ~-----~~-----------~~~--~-~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 142 (465)
. .. ..+ . . +|++++|+.++|+++|||+++|++++++..+...+++.... +....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~----~~~~~ 155 (481)
T PLN02992 80 VTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDK----DIKEE 155 (481)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcc----ccccc
Confidence 0 00 000 0 0 99999999999999999999999999988776555443211 10000
Q ss_pred ccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHhcc--C--
Q 012342 143 SCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALSFM--F-- 218 (465)
Q Consensus 143 ~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~--~-- 218 (465)
. ......+ .+|+++.++..+++..+... .......+.+......+++++++|||++||+.++++++.. .
T Consensus 156 ~----~~~~~~~-~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~ 228 (481)
T PLN02992 156 H----TVQRKPL-AMPGCEPVRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGR 228 (481)
T ss_pred c----ccCCCCc-ccCCCCccCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccc
Confidence 0 0001122 37998888888888543221 2223344445556677899999999999999999998753 1
Q ss_pred --CCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCCC
Q 012342 219 --PHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNH 296 (465)
Q Consensus 219 --p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~ 296 (465)
.++++.|||+..... . . ..+++|.+|||.+++++||||||||...++.+++.+++.+|+.+++
T Consensus 229 ~~~~~v~~VGPl~~~~~------------~-~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~ 293 (481)
T PLN02992 229 VARVPVYPIGPLCRPIQ------------S-S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQ 293 (481)
T ss_pred ccCCceEEecCccCCcC------------C-C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 134999999964211 0 0 1345799999999889999999999999999999999999999999
Q ss_pred CEEEEEcCCCCC---------------C-CcCCCchhHHHHhccCceE-eeccChhhhhcCCCcceeeecCCchhHHHHH
Q 012342 297 PFLWIIRPDLVT---------------G-ETADLPAEFEVKAKEKGFV-ASWCPQEEVLKHPSIGGFLTHCGWNSIVESL 359 (465)
Q Consensus 297 ~~l~~~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~v-~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal 359 (465)
+|||+++..... . ....+|++|.+++.+++.+ .+|+||.+||+|+++|+|||||||||++|++
T Consensus 294 ~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal 373 (481)
T PLN02992 294 RFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESV 373 (481)
T ss_pred CEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHH
Confidence 999999742110 0 0124888999998877665 5999999999999999999999999999999
Q ss_pred hcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhC--CC
Q 012342 360 CSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAA--PH 437 (465)
Q Consensus 360 ~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~--~~ 437 (465)
++|||||+||+++||+.||+++++++|+|+.+...++.++.++|+++|+++|.+++|++++++|+++++++++|+. +|
T Consensus 374 ~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~G 453 (481)
T PLN02992 374 VGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGG 453 (481)
T ss_pred HcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999668999999964102489999999999999888788999999999999999994 69
Q ss_pred CchHHHHHHHHHHHHhcCCCCCCC
Q 012342 438 GSSSLNLDKLVNEILLSNKHNSSI 461 (465)
Q Consensus 438 g~~~~~~~~~~~~~~~~~~~~~~~ 461 (465)
|||.+++++|++.+.+-...-+|+
T Consensus 454 GSS~~~l~~~v~~~~~~~~~~~~~ 477 (481)
T PLN02992 454 GVAHESLCRVTKECQRFLERVRCL 477 (481)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997754444444
No 8
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-65 Score=517.93 Aligned_cols=426 Identities=32% Similarity=0.572 Sum_probs=318.0
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCC-----CCCCCCCCCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP-----DGLPASSDES 84 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~-----~~~~~~~~~~ 84 (465)
++||+++|||++||++||++||+.|+.+|+.|||++++.+..++............ .++|+.+| +++|+..+..
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~-~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGL-PIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCC-CeEEEEcCCCCccCCCCCCcccc
Confidence 67999999999999999999999999999999999999987766654221111111 38898887 5666541100
Q ss_pred Cc-cc-C----------------------C--C-C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhc
Q 012342 85 PT-AQ-D----------------------A--Y-S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEK 134 (465)
Q Consensus 85 ~~-~~-~----------------------~--~-~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 134 (465)
.. .. + . + . +|++++|+.++|+++|||+++|++++++..+..+.+....
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~-- 164 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHN-- 164 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhc--
Confidence 00 00 0 0 0 0 8999999999999999999999999988877655442221
Q ss_pred CcCCCCCcccccccccCcceeecCCCCC---CccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHH
Q 012342 135 GLFPVKDKSCLTKEYLNSLIDWIPGMKD---IRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVL 211 (465)
Q Consensus 135 ~~~P~~~~~~~~~~~~~~~~~~~p~l~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~ 211 (465)
...+... ...++. +|++++ ++..+++.++.... ....+.....+....++++++|||++||+.++
T Consensus 165 ~~~~~~~--------~~~~~~-iPg~p~~~~l~~~dlp~~~~~~~---~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l 232 (491)
T PLN02534 165 AHLSVSS--------DSEPFV-VPGMPQSIEITRAQLPGAFVSLP---DLDDVRNKMREAESTAFGVVVNSFNELEHGCA 232 (491)
T ss_pred ccccCCC--------CCceee-cCCCCccccccHHHCChhhcCcc---cHHHHHHHHHhhcccCCEEEEecHHHhhHHHH
Confidence 1111110 111233 788764 66667776432211 11222222222334577999999999999999
Q ss_pred HHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHH
Q 012342 212 NALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGL 291 (465)
Q Consensus 212 ~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al 291 (465)
++++..++++++.|||++........ .. ..+.....++++|.+|||.+++++||||||||......+++.+++.+|
T Consensus 233 ~~l~~~~~~~v~~VGPL~~~~~~~~~--~~--~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl 308 (491)
T PLN02534 233 EAYEKAIKKKVWCVGPVSLCNKRNLD--KF--ERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGL 308 (491)
T ss_pred HHHHhhcCCcEEEECccccccccccc--cc--ccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 99988775569999999742211000 00 001011112457999999999899999999999999999999999999
Q ss_pred HhCCCCEEEEEcCCCCC-C-CcCCCchhHHHHhc-cCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 292 VNSNHPFLWIIRPDLVT-G-ETADLPAEFEVKAK-EKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 292 ~~~~~~~l~~~~~~~~~-~-~~~~~~~~~~~~~~-~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
+.++.+|||+++.+... + ....+|++|.+++. .++++.+|+||..||+|+++|+|||||||||++||+++|||+|++
T Consensus 309 ~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~ 388 (491)
T PLN02534 309 EASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITW 388 (491)
T ss_pred HhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEec
Confidence 99999999999843211 1 11136788987754 455557999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHhhcccceeEEEEecC-------C----CCCCHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHhC
Q 012342 369 PFTGDQPTNGRYVCNEWGVGMEINGD-------D----EDVIRNEVEKLVREMME--GEKGKQMRNKAMEWKGLAEEAAA 435 (465)
Q Consensus 369 P~~~DQ~~na~~~~~~~g~g~~~~~~-------~----~~~~~~~l~~ai~~~l~--~~~~~~~~~~a~~l~~~~~~~~~ 435 (465)
|+++||+.||+++++.||+|+++... + ..+++++|.++|+++|. +++|+++|+||++|++++++++.
T Consensus 389 P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~ 468 (491)
T PLN02534 389 PLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAME 468 (491)
T ss_pred cccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998899999988410 0 13799999999999997 45688999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHhc
Q 012342 436 PHGSSSLNLDKLVNEILLS 454 (465)
Q Consensus 436 ~~g~~~~~~~~~~~~~~~~ 454 (465)
+||||.+++++||+++...
T Consensus 469 ~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 469 LGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999864
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.7e-65 Score=515.33 Aligned_cols=417 Identities=26% Similarity=0.450 Sum_probs=319.3
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCC--CEEEEEeCCcch-HHHHhhhcCCCCCCCCCeeEEeCCCCC--CC-CCC-
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITFVNTEFNH-RRLLKARGQHSLDGLPSFRFEAIPDGL--PA-SSD- 82 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rG--h~Vt~~t~~~~~-~~~~~~~~~~~~~~~~~i~f~~l~~~~--~~-~~~- 82 (465)
++||+++|+|++||++||++||+.|+.+| +.|||++++.+. ..+....... ....++++|+.+|+.. +. ...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSI-ASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhc-cCCCCCeEEEEeCCCCCCCcccccc
Confidence 67999999999999999999999999998 999999998765 3332221100 0112369999998532 11 000
Q ss_pred CCC-----c---c------------cC-----CC--C--CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhh
Q 012342 83 ESP-----T---A------------QD-----AY--S--LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKE 133 (465)
Q Consensus 83 ~~~-----~---~------------~~-----~~--~--~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 133 (465)
+.. . . .. -+ . +|.+++|+.++|+++|||+++|+++++...+..++++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 000 0 0 00 01 1 89999999999999999999999999988877765543211
Q ss_pred cC-cCCCCCcccccccccCcceeecCCC-CCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHH
Q 012342 134 KG-LFPVKDKSCLTKEYLNSLIDWIPGM-KDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVL 211 (465)
Q Consensus 134 ~~-~~P~~~~~~~~~~~~~~~~~~~p~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~ 211 (465)
.. ..+.. +.+..+ .+||+ ++++..+++.++..... .....+......+++++++||+++||++++
T Consensus 162 ~~~~~~~~--------~~~~~~-~vPgl~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~ 228 (468)
T PLN02207 162 KDTSVFVR--------NSEEML-SIPGFVNPVPANVLPSALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSV 228 (468)
T ss_pred cccccCcC--------CCCCeE-ECCCCCCCCChHHCcchhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHH
Confidence 00 00000 011123 48998 57888999876532211 222334445677899999999999999999
Q ss_pred HHHhc--cCCCceeeecccccccccchhhccccccCCC-CCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHH
Q 012342 212 NALSF--MFPHHLFTIGPLQLLLNQTEEQDGMLNSIGY-NLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVA 288 (465)
Q Consensus 212 ~~~~~--~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~ 288 (465)
+..+. ..|+ ++.|||++..... ..+. +.+ .++++.+|||+++++++|||||||....+.+++.+++
T Consensus 229 ~~~~~~~~~p~-v~~VGPl~~~~~~---------~~~~~~~~-~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela 297 (468)
T PLN02207 229 NHFLDEQNYPS-VYAVGPIFDLKAQ---------PHPEQDLA-RRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIA 297 (468)
T ss_pred HHHHhccCCCc-EEEecCCcccccC---------CCCccccc-hhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHH
Confidence 98854 4455 9999999753221 1111 111 2457999999998899999999999999999999999
Q ss_pred HHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 289 MGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 289 ~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
.+|+.++++|||+++.... ...+.+|++|.+++++|+++++|+||.+||+|+++|+|||||||||++||+++|||||+|
T Consensus 298 ~~l~~~~~~flW~~r~~~~-~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~ 376 (468)
T PLN02207 298 HGLELCQYRFLWSLRTEEV-TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTW 376 (468)
T ss_pred HHHHHCCCcEEEEEeCCCc-cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEec
Confidence 9999999999999985321 112348899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHhhcccceeEEEEecCC-----CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 012342 369 PFTGDQPTNGRYVCNEWGVGMEINGDD-----EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLN 443 (465)
Q Consensus 369 P~~~DQ~~na~~~~~~~g~g~~~~~~~-----~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 443 (465)
|+++||+.||+++++++|+|+++..+. +.+++++|+++|+++|++ ++++||+||+++++++++|+.+||||+++
T Consensus 377 P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~ 455 (468)
T PLN02207 377 PMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAA 455 (468)
T ss_pred CccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999999867799999874210 246999999999999973 35679999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 012342 444 LDKLVNEILL 453 (465)
Q Consensus 444 ~~~~~~~~~~ 453 (465)
+++|++++..
T Consensus 456 l~~~v~~~~~ 465 (468)
T PLN02207 456 IEKFIHDVIG 465 (468)
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 10
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.2e-65 Score=517.94 Aligned_cols=422 Identities=28% Similarity=0.479 Sum_probs=322.6
Q ss_pred CCCEEEEEcCCCCccHHHHHHHHHHHHhCC----CEEEEEeCCcch----HHHHhhhcCCCCCCCCCeeEEeCCCCCCCC
Q 012342 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKG----FHITFVNTEFNH----RRLLKARGQHSLDGLPSFRFEAIPDGLPAS 80 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~La~~L~~rG----h~Vt~~t~~~~~----~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~ 80 (465)
+|+||+++|||++||++||+.||+.|+.+| +.|||++++.+. ..+........ ....+++|+.+|++.++.
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREA-ASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcc-cCCCCEEEEECCCCCCCC
Confidence 388999999999999999999999999997 899999987652 23333211100 111258999998654221
Q ss_pred C-CCCC----------------cccCC--C-C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcCcC
Q 012342 81 S-DESP----------------TAQDA--Y-S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLF 137 (465)
Q Consensus 81 ~-~~~~----------------~~~~~--~-~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (465)
. ++.. ....+ + . +|++++|+.++|+++|||++.|++++++..+..++++......-.
T Consensus 81 ~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 160 (480)
T PLN00164 81 DAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEVAV 160 (480)
T ss_pred ccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccccC
Confidence 0 0000 00001 1 0 999999999999999999999999999998887766442111000
Q ss_pred CCCCcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHhcc
Q 012342 138 PVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALSFM 217 (465)
Q Consensus 138 P~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~ 217 (465)
+... ....+. +|+++.++..+++.+..... +....++....+...+++++++|||++||+.++++++..
T Consensus 161 ~~~~--------~~~~~~-iPGlp~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 229 (480)
T PLN00164 161 EFEE--------MEGAVD-VPGLPPVPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADG 229 (480)
T ss_pred cccc--------cCccee-cCCCCCCChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhc
Confidence 1110 012333 89998888888987553321 122233334445567899999999999999999999874
Q ss_pred C------CCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHH
Q 012342 218 F------PHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGL 291 (465)
Q Consensus 218 ~------p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al 291 (465)
. .++++.|||++..... . .....+++|.+|||+++++++|||||||....+.+++.+++.+|
T Consensus 230 ~~~~~~~~~~v~~vGPl~~~~~~---------~---~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL 297 (480)
T PLN00164 230 RCTPGRPAPTVYPIGPVISLAFT---------P---PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGL 297 (480)
T ss_pred cccccCCCCceEEeCCCcccccc---------C---CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 2 1349999999742211 0 01124567999999999899999999999888999999999999
Q ss_pred HhCCCCEEEEEcCCCCC--------CCcCCCchhHHHHhccCceEe-eccChhhhhcCCCcceeeecCCchhHHHHHhcC
Q 012342 292 VNSNHPFLWIIRPDLVT--------GETADLPAEFEVKAKEKGFVA-SWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSG 362 (465)
Q Consensus 292 ~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~v~-~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~G 362 (465)
+.++++|||+++..... +....+|+++.+++.+++.++ +|+||.+||+|+++|+|||||||||++|++++|
T Consensus 298 ~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~G 377 (480)
T PLN00164 298 ERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHG 377 (480)
T ss_pred HHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcC
Confidence 99999999999854211 112247889988888777775 899999999999999999999999999999999
Q ss_pred CcEEecCCCCChhhHHHhhcccceeEEEEecCC---CCCCHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHhCCC
Q 012342 363 VPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD---EDVIRNEVEKLVREMMEGE--KGKQMRNKAMEWKGLAEEAAAPH 437 (465)
Q Consensus 363 vP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~---~~~~~~~l~~ai~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~ 437 (465)
||||+||+++||+.||+++++++|+|+.+...+ +.+++++|+++|+++|.++ +|+++|+||+++++++++++.+|
T Consensus 378 VP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~g 457 (480)
T PLN00164 378 VPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEG 457 (480)
T ss_pred CCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999998867899999985310 2479999999999999865 37899999999999999999999
Q ss_pred CchHHHHHHHHHHHHhc
Q 012342 438 GSSSLNLDKLVNEILLS 454 (465)
Q Consensus 438 g~~~~~~~~~~~~~~~~ 454 (465)
|||.+++++|++++...
T Consensus 458 GSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 458 GSSYAALQRLAREIRHG 474 (480)
T ss_pred CcHHHHHHHHHHHHHhc
Confidence 99999999999999874
No 11
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.8e-65 Score=511.75 Aligned_cols=408 Identities=30% Similarity=0.541 Sum_probs=313.6
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHh-CCCEEEEEeCCcc-hHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCC-CCc
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHH-KGFHITFVNTEFN-HRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDE-SPT 86 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~-rGh~Vt~~t~~~~-~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~-~~~ 86 (465)
++||+++|||++||++||++||+.|+. +|+.|||++++.+ .+.+.+. ....++++|+.+++++++..+. ...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~-----~~~~~~i~~~~i~dglp~g~~~~~~~ 77 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN-----HNNVENLSFLTFSDGFDDGVISNTDD 77 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc-----CCCCCCEEEEEcCCCCCCcccccccc
Confidence 679999999999999999999999996 6999999999864 2222111 0112369999999877754100 000
Q ss_pred -------------------ccCC-----C-C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcCcCC
Q 012342 87 -------------------AQDA-----Y-S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFP 138 (465)
Q Consensus 87 -------------------~~~~-----~-~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~P 138 (465)
...+ + . +|++++|+.++|+++|||++.|++++++..+..+++... .
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~------~ 151 (455)
T PLN02152 78 VQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG------N 151 (455)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc------C
Confidence 0000 0 0 899999999999999999999999999988877654311 0
Q ss_pred CCCcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhc--ccceeeecchhhhhHHHHHHHhc
Q 012342 139 VKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENAS--KASAIIIHTFDALEQQVLNALSF 216 (465)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~le~~~~~~~~~ 216 (465)
...+ .+|+++.++..+++.++..............+..+... .++++++|||++||+.++++++.
T Consensus 152 ------------~~~~-~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 218 (455)
T PLN02152 152 ------------NSVF-EFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN 218 (455)
T ss_pred ------------CCee-ecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc
Confidence 0112 38888888888888866432222222333333444332 35799999999999999999865
Q ss_pred cCCCceeeecccccccccchhhccccccCCC--CCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhC
Q 012342 217 MFPHHLFTIGPLQLLLNQTEEQDGMLNSIGY--NLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNS 294 (465)
Q Consensus 217 ~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~ 294 (465)
. +++.|||+......... ..+. +.++.+.++.+|||++++++||||||||...++.+++.+++.+|+.+
T Consensus 219 --~-~v~~VGPL~~~~~~~~~------~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 289 (455)
T PLN02152 219 --I-EMVAVGPLLPAEIFTGS------ESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEG 289 (455)
T ss_pred --C-CEEEEcccCcccccccc------ccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHc
Confidence 2 49999999742110000 0011 11223457999999998889999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCC-----CC---cCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEE
Q 012342 295 NHPFLWIIRPDLVT-----GE---TADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMI 366 (465)
Q Consensus 295 ~~~~l~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i 366 (465)
+.+|||+++..... .+ ...++++|.++.++|+++.+|+||.+||+|+++|+|||||||||++|++++|||+|
T Consensus 290 ~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l 369 (455)
T PLN02152 290 KRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVV 369 (455)
T ss_pred CCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEE
Confidence 99999999853210 01 11246889888999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHhhcccceeEEEEecCC-CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 012342 367 CWPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLD 445 (465)
Q Consensus 367 ~~P~~~DQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 445 (465)
++|+++||+.||+++++.||+|+.+.... +.+++++|+++|+++|+++ +++||+||+++++++++++++||||.++++
T Consensus 370 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~ 448 (455)
T PLN02152 370 AFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVE 448 (455)
T ss_pred eccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 99999999999999976677777774211 3469999999999999754 667999999999999999999999999999
Q ss_pred HHHHHH
Q 012342 446 KLVNEI 451 (465)
Q Consensus 446 ~~~~~~ 451 (465)
+||+++
T Consensus 449 ~li~~i 454 (455)
T PLN02152 449 AFVKTL 454 (455)
T ss_pred HHHHHh
Confidence 999976
No 12
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=8e-65 Score=506.93 Aligned_cols=405 Identities=25% Similarity=0.399 Sum_probs=313.2
Q ss_pred CCCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCC--CCCCCCCCCCCc
Q 012342 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP--DGLPASSDESPT 86 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~--~~~~~~~~~~~~ 86 (465)
.|+||+++|||++||++||+.||+.|+.+|+.|||++++.+...+... .. ......+.+.++| ++++++. +.
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~-~~~~~~v~~~~~p~~~glp~g~---e~ 77 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NL-FPHNIVFRSVTVPHVDGLPVGT---ET 77 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--cc-CCCCceEEEEECCCcCCCCCcc---cc
Confidence 489999999999999999999999999999999999999887655432 00 0001136777777 5665441 11
Q ss_pred ccCCC---------------------------C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcCc
Q 012342 87 AQDAY---------------------------S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGL 136 (465)
Q Consensus 87 ~~~~~---------------------------~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 136 (465)
..++. . +|+ ++|+.++|+++|||++.|++++++..++++. + .+.
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~~ 151 (453)
T PLN02764 78 VSEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GGE 151 (453)
T ss_pred cccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----ccc
Confidence 10110 0 895 8899999999999999999999988776542 1 000
Q ss_pred CCCCCcccccccccCcceeecCCCCC----CccCcCCcccc--cCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHH
Q 012342 137 FPVKDKSCLTKEYLNSLIDWIPGMKD----IRIRDLPSFIQ--STDPKDMMFNLCVEATENASKASAIIIHTFDALEQQV 210 (465)
Q Consensus 137 ~P~~~~~~~~~~~~~~~~~~~p~l~~----~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~ 210 (465)
.+ .. +|+++. ++..+++.+.. ..........+..+..+....++++++|||++||+.+
T Consensus 152 ~~-------------~~---~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~ 215 (453)
T PLN02764 152 LG-------------VP---PPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNF 215 (453)
T ss_pred CC-------------CC---CCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHH
Confidence 00 01 355552 45555554321 1111122334444454566788999999999999999
Q ss_pred HHHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHH
Q 012342 211 LNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMG 290 (465)
Q Consensus 211 ~~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a 290 (465)
+++.+...+++++.|||++..... . ...+++|.+|||.++++|||||||||....+.+++.+++.+
T Consensus 216 ~~~~~~~~~~~v~~VGPL~~~~~~---------~-----~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~g 281 (453)
T PLN02764 216 CDYIEKHCRKKVLLTGPVFPEPDK---------T-----RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLG 281 (453)
T ss_pred HHHHHhhcCCcEEEeccCccCccc---------c-----ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHH
Confidence 999987544459999999642210 0 01245799999999999999999999998999999999999
Q ss_pred HHhCCCCEEEEEcCCCCCC-CcCCCchhHHHHhccCceEe-eccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 291 LVNSNHPFLWIIRPDLVTG-ETADLPAEFEVKAKEKGFVA-SWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 291 l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~-~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
|+.++.+|+|+++.....+ ....+|++|.+++.+++.++ +|+||.+||+|+++++|||||||||++||+++|||+|++
T Consensus 282 L~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~ 361 (453)
T PLN02764 282 MELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLV 361 (453)
T ss_pred HHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeC
Confidence 9999999999999532211 12358999999988887775 999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHhhcccceeEEEEecCC-CCCCHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Q 012342 369 PFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEG--EKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLD 445 (465)
Q Consensus 369 P~~~DQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~l~~ai~~~l~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 445 (465)
|+++||+.||+++++.+|+|+.+...+ +.++.++|+++|+++|++ +.|+++|+||+++++.++ ++|||..+++
T Consensus 362 P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~ 437 (453)
T PLN02764 362 PQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVD 437 (453)
T ss_pred CcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHH
Confidence 999999999999966799999985410 258999999999999986 457889999999999997 4899999999
Q ss_pred HHHHHHHhcCCCCC
Q 012342 446 KLVNEILLSNKHNS 459 (465)
Q Consensus 446 ~~~~~~~~~~~~~~ 459 (465)
+||+.+.+..+.++
T Consensus 438 ~lv~~~~~~~~~~~ 451 (453)
T PLN02764 438 NFIESLQDLVSGTS 451 (453)
T ss_pred HHHHHHHHhccccc
Confidence 99999998876554
No 13
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.8e-64 Score=506.94 Aligned_cols=417 Identities=27% Similarity=0.452 Sum_probs=315.3
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCC----CCCCCCCCCCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP----DGLPASSDESP 85 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~----~~~~~~~~~~~ 85 (465)
++||+++|||++||++||++||+.|+.||+.|||++++.+..++.+.... ..++++|+.+| ++++++. +
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~----~~~~i~~~~lp~p~~dglp~~~---~ 78 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ----LSSSITLVSFPLPSVPGLPSSA---E 78 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc----CCCCeeEEECCCCccCCCCCCc---c
Confidence 78999999999999999999999999999999999999887666542110 11258898887 5666431 1
Q ss_pred cccCCC-----C-------------------------CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcC
Q 012342 86 TAQDAY-----S-------------------------LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKG 135 (465)
Q Consensus 86 ~~~~~~-----~-------------------------~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (465)
...++. . +|++++|+.++|+++|||+++|+++++...+..++.......+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 79 SSTDVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred cccccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 111111 0 9999999999999999999999999998887765443222222
Q ss_pred cCCCCCcccccccccCcceeecCCCC------CCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHH
Q 012342 136 LFPVKDKSCLTKEYLNSLIDWIPGMK------DIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQ 209 (465)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~~~~~p~l~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~ 209 (465)
..+... ..+..+|++. .++..+++.++..............+......+++++++|||++||+.
T Consensus 159 ~~~~~~----------~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~ 228 (472)
T PLN02670 159 DLRSTA----------EDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPE 228 (472)
T ss_pred cCCCcc----------ccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHH
Confidence 211110 0111134331 134457776543221111112222233345667899999999999999
Q ss_pred HHHHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHH
Q 012342 210 VLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAM 289 (465)
Q Consensus 210 ~~~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~ 289 (465)
++++++...+++++.|||+......... ....+. ..+++|.+|||++++++||||||||...++.+++.+++.
T Consensus 229 ~l~~l~~~~~~~v~~VGPl~~~~~~~~~------~~~~~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~ 301 (472)
T PLN02670 229 WFDLLSDLYRKPIIPIGFLPPVIEDDEE------DDTIDV-KGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELAL 301 (472)
T ss_pred HHHHHHHhhCCCeEEEecCCcccccccc------cccccc-chhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHH
Confidence 9999987654459999999642110000 000000 113579999999988999999999999999999999999
Q ss_pred HHHhCCCCEEEEEcCCCC--CCCcCCCchhHHHHhccCceE-eeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEE
Q 012342 290 GLVNSNHPFLWIIRPDLV--TGETADLPAEFEVKAKEKGFV-ASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMI 366 (465)
Q Consensus 290 al~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v-~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i 366 (465)
+|+.++++|||+++.... .+....+|++|.+++.+++++ .+|+||.+||+|+++|+|||||||||++|++++|||+|
T Consensus 302 gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l 381 (472)
T PLN02670 302 GLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLI 381 (472)
T ss_pred HHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEE
Confidence 999999999999985321 111234899999998888877 59999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHhhcccceeEEEEecCC--CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 012342 367 CWPFTGDQPTNGRYVCNEWGVGMEINGDD--EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNL 444 (465)
Q Consensus 367 ~~P~~~DQ~~na~~~~~~~g~g~~~~~~~--~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 444 (465)
++|+++||+.||+++ +++|+|+.+...+ +.++.++|+++|+++|.+++|++||+||+++++.+++ .+...+.+
T Consensus 382 ~~P~~~DQ~~Na~~v-~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~ 456 (472)
T PLN02670 382 LFPVLNEQGLNTRLL-HGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYV 456 (472)
T ss_pred eCcchhccHHHHHHH-HHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHH
Confidence 999999999999999 7799999996411 2489999999999999888788899999999999994 57788999
Q ss_pred HHHHHHHHhcC
Q 012342 445 DKLVNEILLSN 455 (465)
Q Consensus 445 ~~~~~~~~~~~ 455 (465)
++|++.+....
T Consensus 457 ~~~~~~l~~~~ 467 (472)
T PLN02670 457 DELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 14
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.7e-64 Score=512.12 Aligned_cols=418 Identities=32% Similarity=0.576 Sum_probs=322.5
Q ss_pred CCCCEEEEEcCCCCccHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCC-
Q 012342 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDES- 84 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~- 84 (465)
+.++||+++|+|++||++||++||++|+.| ||+|||++++.+...+++... .++++|+.+|++++...+..
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~------~~gi~fv~lp~~~p~~~~~~~ 81 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK------PDNIRFATIPNVIPSELVRAA 81 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC------CCCEEEEECCCCCCCcccccc
Confidence 348999999999999999999999999999 999999999999887776421 23799999997655431000
Q ss_pred Cc-------c-----------cCC--C----CCCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcCcCCCC
Q 012342 85 PT-------A-----------QDA--Y----SLDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVK 140 (465)
Q Consensus 85 ~~-------~-----------~~~--~----~~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 140 (465)
.. . ..+ . .+|.+++|+..+|+++|||++.|+++++...+..++++.....+..|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (459)
T PLN02448 82 DFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVE 161 (459)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 00 0 000 0 0899999999999999999999999999877776665543222222221
Q ss_pred CcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHhccCCC
Q 012342 141 DKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALSFMFPH 220 (465)
Q Consensus 141 ~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~p~ 220 (465)
... ..+..+.++|+++.++..+++.++... .....+.+........+++.+++||+++||+.++++++...+.
T Consensus 162 ~~~-----~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~ 234 (459)
T PLN02448 162 LSE-----SGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPF 234 (459)
T ss_pred ccc-----ccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCC
Confidence 100 001123347888877888888654321 2222334444555566788999999999999999999887665
Q ss_pred ceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEE
Q 012342 221 HLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLW 300 (465)
Q Consensus 221 ~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~ 300 (465)
+++.|||+......... .........+.++.+||+.++++++|||||||+...+.+++.+++.+|+.++++|||
T Consensus 235 ~~~~iGP~~~~~~~~~~------~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw 308 (459)
T PLN02448 235 PVYPIGPSIPYMELKDN------SSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLW 308 (459)
T ss_pred ceEEecCcccccccCCC------ccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 69999999642110000 000000112347899999998899999999999888899999999999999999999
Q ss_pred EEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHh
Q 012342 301 IIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRY 380 (465)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~ 380 (465)
+++.. ..++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 309 ~~~~~---------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~ 379 (459)
T PLN02448 309 VARGE---------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKL 379 (459)
T ss_pred EEcCc---------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHH
Confidence 88743 124444456789999999999999999999999999999999999999999999999999999999
Q ss_pred hcccceeEEEEecCC---CCCCHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Q 012342 381 VCNEWGVGMEINGDD---EDVIRNEVEKLVREMMEGE--KGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 453 (465)
Q Consensus 381 ~~~~~g~g~~~~~~~---~~~~~~~l~~ai~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 453 (465)
+++.||+|+.+.... +.+++++|+++|+++|.++ +|++||+||+++++++++++.+||||.+++++|++.+++
T Consensus 380 v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 380 IVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 966689998885310 3579999999999999863 578899999999999999999999999999999999975
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=4.3e-64 Score=503.12 Aligned_cols=417 Identities=25% Similarity=0.431 Sum_probs=315.7
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCC-C-CCC-
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASS-D-ESP- 85 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~r-Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~-~-~~~- 85 (465)
++||+++|+|++||++||+.||+.|+.+ |..|||++++.+...+............++++|+.+|....+.. . +..
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 7899999999999999999999999987 99999999877654432110000000112589998884321110 0 000
Q ss_pred ------cc-----------cCC--C-C---CCccCchHHHHHHHcCCC-eEEEcCCchhhhhhhhhhhhhhhcCcCCCCC
Q 012342 86 ------TA-----------QDA--Y-S---LDGFLPFTITAAQQLGLP-IVLFFTISACSFMGFKQFQTFKEKGLFPVKD 141 (465)
Q Consensus 86 ------~~-----------~~~--~-~---~D~~~~~~~~vA~~lgiP-~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 141 (465)
.. ..+ + . +|++++|+.++|+++||| +++|++++++.....++++.... ..+. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~--~~~~-~ 159 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDT--VVEG-E 159 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhc--cccc-c
Confidence 00 000 0 0 899999999999999999 58888888877766666543211 1110 0
Q ss_pred cccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHhccC---
Q 012342 142 KSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALSFMF--- 218 (465)
Q Consensus 142 ~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~--- 218 (465)
.. +.+..+ .+|+++.++..+++..+.... ......+....+...+++++++|||++||+.++++++..+
T Consensus 160 ~~-----~~~~~~-~vPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~ 231 (470)
T PLN03015 160 YV-----DIKEPL-KIPGCKPVGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELN 231 (470)
T ss_pred cC-----CCCCee-eCCCCCCCChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccc
Confidence 00 011233 389998888889986543221 1112223344455778999999999999999999998742
Q ss_pred ---CCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCC
Q 012342 219 ---PHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSN 295 (465)
Q Consensus 219 ---p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~ 295 (465)
.+++++|||+..... . . ..+++|.+|||.+++++||||||||....+.+++.+++.+|+.++
T Consensus 232 ~~~~~~v~~VGPl~~~~~------------~-~--~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~ 296 (470)
T PLN03015 232 RVMKVPVYPIGPIVRTNV------------H-V--EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSG 296 (470)
T ss_pred cccCCceEEecCCCCCcc------------c-c--cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCC
Confidence 134999999973110 0 0 123479999999988999999999999999999999999999999
Q ss_pred CCEEEEEcCCCC--------CC-CcCCCchhHHHHhccCceE-eeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcE
Q 012342 296 HPFLWIIRPDLV--------TG-ETADLPAEFEVKAKEKGFV-ASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPM 365 (465)
Q Consensus 296 ~~~l~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~v-~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~ 365 (465)
++|||+++.... .+ ..+.+|++|.+++.+++++ .+|+||.+||+|+++|+|||||||||++|++++||||
T Consensus 297 ~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~ 376 (470)
T PLN03015 297 QRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPI 376 (470)
T ss_pred CcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCE
Confidence 999999974311 01 1224889999998888876 5999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHhhcccceeEEEEecC-C-CCCCHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHhCCCCchH
Q 012342 366 ICWPFTGDQPTNGRYVCNEWGVGMEINGD-D-EDVIRNEVEKLVREMMEG--EKGKQMRNKAMEWKGLAEEAAAPHGSSS 441 (465)
Q Consensus 366 i~~P~~~DQ~~na~~~~~~~g~g~~~~~~-~-~~~~~~~l~~ai~~~l~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 441 (465)
|+||+++||+.||+++++++|+|+++... . +.+++++|+++|+++|.+ ++|+++|+||+++++++++|+++||||.
T Consensus 377 v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~ 456 (470)
T PLN03015 377 VAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSY 456 (470)
T ss_pred EecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999999998899999999510 0 468999999999999963 5688999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 012342 442 LNLDKLVNEIL 452 (465)
Q Consensus 442 ~~~~~~~~~~~ 452 (465)
+++++|++.+.
T Consensus 457 ~nl~~~~~~~~ 467 (470)
T PLN03015 457 NSLFEWAKRCY 467 (470)
T ss_pred HHHHHHHHhcc
Confidence 99999998763
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.8e-64 Score=510.96 Aligned_cols=421 Identities=30% Similarity=0.475 Sum_probs=319.0
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCC--CEEEEEeCCcchHHHH--h-hhcCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITFVNTEFNHRRLL--K-ARGQHSLDGLPSFRFEAIPDGLPASSDES 84 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rG--h~Vt~~t~~~~~~~~~--~-~~~~~~~~~~~~i~f~~l~~~~~~~~~~~ 84 (465)
|+||+++|||++||++||++||+.|+.+| ..|||++++.+...+. + ..........++++|+.+|++.+...+..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 81 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTEDP 81 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccch
Confidence 78999999999999999999999999998 8999999988754321 0 00000000123599999986654210000
Q ss_pred C------------------cc--------cCCCC--CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcCc
Q 012342 85 P------------------TA--------QDAYS--LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGL 136 (465)
Q Consensus 85 ~------------------~~--------~~~~~--~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 136 (465)
. .. ..+.. +|++++|+.++|+++|||++.|+++++...+..++++.....+-
T Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~~ 161 (481)
T PLN02554 82 TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEKK 161 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccccc
Confidence 0 00 00001 89999999999999999999999999999988877654321110
Q ss_pred CCCCCcccccccccCcceeecCCCC-CCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHh
Q 012342 137 FPVKDKSCLTKEYLNSLIDWIPGMK-DIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALS 215 (465)
Q Consensus 137 ~P~~~~~~~~~~~~~~~~~~~p~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~ 215 (465)
.+..... +....+. +|+++ +++..+++..... ..+...+.+.......++++++||+.+||+.++..++
T Consensus 162 ~~~~~~~-----~~~~~v~-iPgl~~pl~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~ 231 (481)
T PLN02554 162 YDVSELE-----DSEVELD-VPSLTRPYPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFS 231 (481)
T ss_pred cCccccC-----CCCceeE-CCCCCCCCCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 1111000 1112233 89984 6777888765432 1223344455566778999999999999999998887
Q ss_pred c---cCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHH
Q 012342 216 F---MFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLV 292 (465)
Q Consensus 216 ~---~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~ 292 (465)
. ..|+ +++|||++...+. ..... ...+++|.+|||++++++||||||||+...+.+++.+++.+|+
T Consensus 232 ~~~~~~~~-v~~vGpl~~~~~~---------~~~~~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~ 300 (481)
T PLN02554 232 GSSGDLPP-VYPVGPVLHLENS---------GDDSK-DEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALE 300 (481)
T ss_pred hcccCCCC-EEEeCCCcccccc---------ccccc-cccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHH
Confidence 5 3455 9999999432211 00000 1134579999999988899999999998889999999999999
Q ss_pred hCCCCEEEEEcCCCC----------CCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcC
Q 012342 293 NSNHPFLWIIRPDLV----------TGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSG 362 (465)
Q Consensus 293 ~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~G 362 (465)
.++++|||+++.... .+....+|++|.+++++|+++++|+||.+||.|+++++|||||||||++||+++|
T Consensus 301 ~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~G 380 (481)
T PLN02554 301 RSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFG 380 (481)
T ss_pred HcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcC
Confidence 999999999985311 0111236889999999999999999999999999999999999999999999999
Q ss_pred CcEEecCCCCChhhHHHhhcccceeEEEEecC--------C-CCCCHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHH
Q 012342 363 VPMICWPFTGDQPTNGRYVCNEWGVGMEINGD--------D-EDVIRNEVEKLVREMME-GEKGKQMRNKAMEWKGLAEE 432 (465)
Q Consensus 363 vP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~--------~-~~~~~~~l~~ai~~~l~-~~~~~~~~~~a~~l~~~~~~ 432 (465)
||||+||+++||+.||+++++++|+|+.+... + +.+++++|+++|+++|. ++ +||+||+++++++++
T Consensus 381 VP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~---~~r~~a~~l~~~~~~ 457 (481)
T PLN02554 381 VPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS---DVRKRVKEMSEKCHV 457 (481)
T ss_pred CCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHH
Confidence 99999999999999996644899999998520 0 35899999999999996 44 499999999999999
Q ss_pred HhCCCCchHHHHHHHHHHHHhc
Q 012342 433 AAAPHGSSSLNLDKLVNEILLS 454 (465)
Q Consensus 433 ~~~~~g~~~~~~~~~~~~~~~~ 454 (465)
++.+||||..++++||+.+.++
T Consensus 458 av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 458 ALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999874
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4.2e-63 Score=505.81 Aligned_cols=424 Identities=29% Similarity=0.514 Sum_probs=313.5
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCC-CCCC-C-CCeeEEeCC---CCCCCCCCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQH-SLDG-L-PSFRFEAIP---DGLPASSDE 83 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~-~~~~-~-~~i~f~~l~---~~~~~~~~~ 83 (465)
++||+++|+|++||++|++.||+.|+.||++|||++++.+..++++..... +... . -.+.+.++| +++++..+.
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 789999999999999999999999999999999999999987776543211 0001 0 023444455 344432100
Q ss_pred CCc---c-c----CCC----C----------------------CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhh
Q 012342 84 SPT---A-Q----DAY----S----------------------LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQ 129 (465)
Q Consensus 84 ~~~---~-~----~~~----~----------------------~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~ 129 (465)
... . . ++. . +|.+++|+..+|+++|||+++|++++++..+..+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 164 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIR 164 (482)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHH
Confidence 000 0 0 000 0 9999999999999999999999999988877665543
Q ss_pred hhhhcCcCCCCCcccccccccCcceeecCCCCC---CccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhh
Q 012342 130 TFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKD---IRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDAL 206 (465)
Q Consensus 130 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~p~l~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 206 (465)
........+ . ....+. +|+++. ++..+++.. ........+.....+...+++++++||+++|
T Consensus 165 ~~~~~~~~~--~--------~~~~~~-~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~l 229 (482)
T PLN03007 165 VHKPQKKVA--S--------SSEPFV-IPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYEL 229 (482)
T ss_pred hcccccccC--C--------CCceee-CCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHH
Confidence 321101111 0 001122 677652 333344321 1112233444455556778899999999999
Q ss_pred hHHHHHHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHH
Q 012342 207 EQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIE 286 (465)
Q Consensus 207 e~~~~~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~ 286 (465)
|++++++++...+.++++|||+....+.... .. ..+.+.+..+++|.+|||.++++++|||||||+...+.+++.+
T Consensus 230 e~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~--~~--~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~ 305 (482)
T PLN03007 230 ESAYADFYKSFVAKRAWHIGPLSLYNRGFEE--KA--ERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFE 305 (482)
T ss_pred HHHHHHHHHhccCCCEEEEcccccccccccc--cc--ccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHH
Confidence 9999999987766569999998643221000 00 0011122234679999999988999999999999888999999
Q ss_pred HHHHHHhCCCCEEEEEcCCCCC-CCcCCCchhHHHHhc-cCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCc
Q 012342 287 VAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAK-EKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVP 364 (465)
Q Consensus 287 ~~~al~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP 364 (465)
++.+|+.++.+|||+++..... +....+|++|.++.. .|+++.+|+||.+||+|+++|+|||||||||++||+++|||
T Consensus 306 ~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP 385 (482)
T PLN03007 306 IAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLP 385 (482)
T ss_pred HHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCC
Confidence 9999999999999999864321 112247888888764 55666799999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHhhcccceeEEEEe--------cCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCC
Q 012342 365 MICWPFTGDQPTNGRYVCNEWGVGMEIN--------GDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAP 436 (465)
Q Consensus 365 ~i~~P~~~DQ~~na~~~~~~~g~g~~~~--------~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~ 436 (465)
+|+||+++||+.||+++++.+++|+.+. . +.+++++|+++|+++|.+++|++||+||+++++.+++++.+
T Consensus 386 ~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~--~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~ 463 (482)
T PLN03007 386 MVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKG--DFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEE 463 (482)
T ss_pred eeeccchhhhhhhHHHHHHhhcceeEecccccccccc--CcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999866566666552 2 56899999999999999887888999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhc
Q 012342 437 HGSSSLNLDKLVNEILLS 454 (465)
Q Consensus 437 ~g~~~~~~~~~~~~~~~~ 454 (465)
||||++++++|++.+.+.
T Consensus 464 gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 464 GGSSFNDLNKFMEELNSR 481 (482)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 999999999999998753
No 18
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.9e-63 Score=498.87 Aligned_cols=394 Identities=27% Similarity=0.384 Sum_probs=301.5
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeC--C--CCCCCCCCCCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAI--P--DGLPASSDESP 85 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l--~--~~~~~~~~~~~ 85 (465)
++||+++|||++||++||++||+.|+.+|++|||++++.+...++.... ..++++|+.+ | ++++++. +
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~-----~~~~i~~~~i~lP~~dGLP~g~---e 75 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL-----FPDSIVFEPLTLPPVDGLPFGA---E 75 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc-----CCCceEEEEecCCCcCCCCCcc---c
Confidence 8899999999999999999999999999999999999988776655411 1124777544 3 5565431 1
Q ss_pred cccCCCC------------------------------CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcC
Q 012342 86 TAQDAYS------------------------------LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKG 135 (465)
Q Consensus 86 ~~~~~~~------------------------------~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (465)
...++.. +|+ ++|+.++|+++|||++.|+++++...+..++... ...
T Consensus 76 ~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~--~~~ 152 (446)
T PLN00414 76 TASDLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA--ELG 152 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh--hcC
Confidence 1111100 895 8899999999999999999999988877654110 000
Q ss_pred cCCCCCcccccccccCcceeecCCCCC----CccCcC--CcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHH
Q 012342 136 LFPVKDKSCLTKEYLNSLIDWIPGMKD----IRIRDL--PSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQ 209 (465)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~~~~~p~l~~----~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~ 209 (465)
.| +|+++. ++..+. +.++.. ....+.+..+...+++++++|||++||+.
T Consensus 153 -~~------------------~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 207 (446)
T PLN00414 153 -FP------------------PPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGN 207 (446)
T ss_pred -CC------------------CCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHH
Confidence 00 244432 121221 111110 11223334455667899999999999999
Q ss_pred HHHHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHH
Q 012342 210 VLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAM 289 (465)
Q Consensus 210 ~~~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~ 289 (465)
++++++...+++++.|||+...... ... ...+++|.+|||.++++|||||||||......+++.+++.
T Consensus 208 ~~~~~~~~~~~~v~~VGPl~~~~~~---------~~~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~ 275 (446)
T PLN00414 208 LCDFIERQCQRKVLLTGPMLPEPQN---------KSG---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCL 275 (446)
T ss_pred HHHHHHHhcCCCeEEEcccCCCccc---------ccC---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHH
Confidence 9999988655559999999642210 000 1123569999999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEcCCCCC-CCcCCCchhHHHHhccCceEe-eccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEe
Q 012342 290 GLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKEKGFVA-SWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMIC 367 (465)
Q Consensus 290 al~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~-~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~ 367 (465)
+|+.+|.+|+|+++..... +....+|++|.+++.++++++ +|+||.+||+|+++++|||||||||++||+++|||+|+
T Consensus 276 gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~ 355 (446)
T PLN00414 276 GMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVF 355 (446)
T ss_pred HHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEe
Confidence 9999999999999864221 122358999999999888885 89999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHhhcccceeEEEEecCC-CCCCHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Q 012342 368 WPFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGE--KGKQMRNKAMEWKGLAEEAAAPHGSSSLNL 444 (465)
Q Consensus 368 ~P~~~DQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~l~~ai~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 444 (465)
||+++||+.||+++++++|+|++++..+ +.+++++|+++|+++|.++ .|++||++|+++++.+. ++||++ ..+
T Consensus 356 ~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l 431 (446)
T PLN00414 356 IPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYA 431 (446)
T ss_pred cCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHH
Confidence 9999999999999977899999996410 2489999999999999764 47889999999999975 467734 448
Q ss_pred HHHHHHHHhcC
Q 012342 445 DKLVNEILLSN 455 (465)
Q Consensus 445 ~~~~~~~~~~~ 455 (465)
++||+++++..
T Consensus 432 ~~~v~~~~~~~ 442 (446)
T PLN00414 432 DKFVEALENEV 442 (446)
T ss_pred HHHHHHHHHhc
Confidence 99999997654
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.9e-63 Score=499.72 Aligned_cols=391 Identities=27% Similarity=0.425 Sum_probs=300.1
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeC--C--CCCCCCCCCCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAI--P--DGLPASSDESP 85 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l--~--~~~~~~~~~~~ 85 (465)
++||+++|||++||++|++.||+.|+.+||+|||+|++.+..++.+... ..+.++|..+ | +++++.. +
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a-----~~~~i~~~~l~~p~~dgLp~g~---~ 75 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL-----FPDSIVFHPLTIPPVNGLPAGA---E 75 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC-----CCCceEEEEeCCCCccCCCCCc---c
Confidence 7899999999999999999999999999999999999988777655311 0113555544 3 4455431 1
Q ss_pred cccCCC--------------------------C----CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcC
Q 012342 86 TAQDAY--------------------------S----LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKG 135 (465)
Q Consensus 86 ~~~~~~--------------------------~----~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (465)
...++. . +| +++|+..+|+++|||++.|+++++...+ +++++. .
T Consensus 76 ~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~ 149 (442)
T PLN02208 76 TTSDIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----G 149 (442)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----c
Confidence 111110 0 89 5789999999999999999999887654 332211 0
Q ss_pred cCCCCCcccccccccCcceeecCCCCC----CccCcCCcccccCCCchhHHH-HHHHHHHhhcccceeeecchhhhhHHH
Q 012342 136 LFPVKDKSCLTKEYLNSLIDWIPGMKD----IRIRDLPSFIQSTDPKDMMFN-LCVEATENASKASAIIIHTFDALEQQV 210 (465)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~~~~~p~l~~----~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~le~~~ 210 (465)
. .... +|+++. ++..+++.+. ....... +.....+....++++++|||++||+.+
T Consensus 150 ~-------------~~~~---~pglp~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~ 209 (442)
T PLN02208 150 K-------------LGVP---PPGYPSSKVLFRENDAHALA----TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKF 209 (442)
T ss_pred c-------------cCCC---CCCCCCcccccCHHHcCccc----ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHH
Confidence 0 0001 455553 3455555421 1112222 222333455678999999999999999
Q ss_pred HHHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHH
Q 012342 211 LNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMG 290 (465)
Q Consensus 211 ~~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~a 290 (465)
+++.+...++++++|||++...+. .. ..+++|.+|||.+++++||||||||...++.+++.+++.+
T Consensus 210 ~~~~~~~~~~~v~~vGpl~~~~~~-----------~~---~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~ 275 (442)
T PLN02208 210 CDYISRQYHKKVLLTGPMFPEPDT-----------SK---PLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLG 275 (442)
T ss_pred HHHHHhhcCCCEEEEeecccCcCC-----------CC---CCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHH
Confidence 999987655559999999743210 00 1246799999999889999999999998899999999999
Q ss_pred HHhCCCCEEEEEcCCCCC-CCcCCCchhHHHHhccCceE-eeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 291 LVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKEKGFV-ASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 291 l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v-~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
++.++.+|+|+++.+... .....+|++|.+++.+++.+ .+|+||.+||+|+++|+|||||||||++||+++|||+|+|
T Consensus 276 l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~ 355 (442)
T PLN02208 276 MELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLI 355 (442)
T ss_pred HHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEec
Confidence 999999999999864211 11234888999887655554 5999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHhhcccceeEEEEecCCCC---CCHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHhCCCCchHHH
Q 012342 369 PFTGDQPTNGRYVCNEWGVGMEINGDDED---VIRNEVEKLVREMMEGE--KGKQMRNKAMEWKGLAEEAAAPHGSSSLN 443 (465)
Q Consensus 369 P~~~DQ~~na~~~~~~~g~g~~~~~~~~~---~~~~~l~~ai~~~l~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 443 (465)
|+++||+.||+++++++|+|+.+.. ++ +++++|+++|+++|+++ .|+++|+||+++++.+. ++|||.++
T Consensus 356 P~~~DQ~~na~~~~~~~g~gv~~~~--~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~ 429 (442)
T PLN02208 356 PFLSDQVLFTRLMTEEFEVSVEVSR--EKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGY 429 (442)
T ss_pred CcchhhHHHHHHHHHHhceeEEecc--ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHH
Confidence 9999999999998677999999975 33 89999999999999865 48899999999999985 37899999
Q ss_pred HHHHHHHHHhc
Q 012342 444 LDKLVNEILLS 454 (465)
Q Consensus 444 ~~~~~~~~~~~ 454 (465)
+++||+++++.
T Consensus 430 l~~~v~~l~~~ 440 (442)
T PLN02208 430 VDKFVEELQEY 440 (442)
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 20
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=6.6e-63 Score=495.02 Aligned_cols=406 Identities=32% Similarity=0.544 Sum_probs=305.6
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCC--CEEEE--EeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKG--FHITF--VNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESP 85 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rG--h~Vt~--~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~ 85 (465)
+-||+++|+|++||++||++||+.|+.+| +.||+ ++++.+...+.+.... .....++++|+.+|++.+... ...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~lp~~~~~~~-~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISS-VSSSFPSITFHHLPAVTPYSS-SST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhcc-ccCCCCCeEEEEcCCCCCCCC-ccc
Confidence 56999999999999999999999999998 45555 5554443332221111 011224699999987653110 000
Q ss_pred cc----------------------cCC----C----CCCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcC
Q 012342 86 TA----------------------QDA----Y----SLDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKG 135 (465)
Q Consensus 86 ~~----------------------~~~----~----~~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 135 (465)
.. ..+ + .+|++++|+..+|+++|||+++|++++++..+.+++++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~-- 158 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE-- 158 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc--
Confidence 00 000 0 089999999999999999999999999999888776543211
Q ss_pred cCCCCCcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHh
Q 012342 136 LFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALS 215 (465)
Q Consensus 136 ~~P~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~ 215 (465)
..|.... .+.....+|+++.++..+++.+..... .....++.+.......++++++|||++||+.++++++
T Consensus 159 ~~~~~~~-------~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~ 229 (451)
T PLN03004 159 TTPGKNL-------KDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAIT 229 (451)
T ss_pred ccccccc-------ccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHH
Confidence 0111000 011112379998888889997654321 2233444455566677899999999999999999998
Q ss_pred ccCC-CceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhC
Q 012342 216 FMFP-HHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNS 294 (465)
Q Consensus 216 ~~~p-~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~ 294 (465)
..+. ++++.|||++..... . . . .. ..+.+|.+|||.+++++||||||||....+.+++.+++.+|+.+
T Consensus 230 ~~~~~~~v~~vGPl~~~~~~-~-------~-~-~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s 298 (451)
T PLN03004 230 EELCFRNIYPIGPLIVNGRI-E-------D-R-ND-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKS 298 (451)
T ss_pred hcCCCCCEEEEeeeccCccc-c-------c-c-cc-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHC
Confidence 7532 359999999732110 0 0 0 11 12457999999998899999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCC-C---C-cCCCchhHHHHhccCc-eEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 295 NHPFLWIIRPDLVT-G---E-TADLPAEFEVKAKEKG-FVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 295 ~~~~l~~~~~~~~~-~---~-~~~~~~~~~~~~~~~~-~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
+++|||+++..... . + ...+|++|.+++.+++ ++.+|+||.+||+|+++|+|||||||||++|++++|||+|++
T Consensus 299 ~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~ 378 (451)
T PLN03004 299 GQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAW 378 (451)
T ss_pred CCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEec
Confidence 99999999953210 0 1 1137889999887655 557999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHhhcccceeEEEEecCC-CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHH
Q 012342 369 PFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSL 442 (465)
Q Consensus 369 P~~~DQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 442 (465)
|+++||+.||+++++++|+|+++...+ +.+++++|+++|+++|++++ ||+||+++++.+++|+++||||++
T Consensus 379 P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~---~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 379 PLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECP---VRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred cccccchhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999999999999966799999996410 25799999999999998776 999999999999999999999864
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-62 Score=500.61 Aligned_cols=421 Identities=27% Similarity=0.453 Sum_probs=312.6
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCC---EEEEEeCCcchH-HHHhhhcCCCCCCCCCeeEEeCCCCCCC-CCC--
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGF---HITFVNTEFNHR-RLLKARGQHSLDGLPSFRFEAIPDGLPA-SSD-- 82 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh---~Vt~~t~~~~~~-~~~~~~~~~~~~~~~~i~f~~l~~~~~~-~~~-- 82 (465)
++||+++|||++||++||++||+.|+.+|. .||++++..+.. ......... ....++++|+.+|++..+ ..+
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~-~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSL-IASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhc-ccCCCCeEEEECCCCCCCcccccc
Confidence 789999999999999999999999999984 567766543221 111110000 011236999999854311 000
Q ss_pred --CCC-------------------c-ccC-----C-C-C---CCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhh
Q 012342 83 --ESP-------------------T-AQD-----A-Y-S---LDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQT 130 (465)
Q Consensus 83 --~~~-------------------~-~~~-----~-~-~---~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~ 130 (465)
... . ... - + . +|++++|+.++|+++|||+++|++++++..+..++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 000 0 000 0 1 1 89999999999999999999999999988887765543
Q ss_pred hhhcCcCCCCCcccccccccCcceeecCCCC-CCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHH
Q 012342 131 FKEKGLFPVKDKSCLTKEYLNSLIDWIPGMK-DIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQ 209 (465)
Q Consensus 131 ~~~~~~~P~~~~~~~~~~~~~~~~~~~p~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~ 209 (465)
... ..+. ... . ...+..+. +|+++ +++..+++....... .........+...+++++++|||++||+.
T Consensus 162 ~~~--~~~~-~~~--~-~~~~~~~~-iPgl~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (475)
T PLN02167 162 RHR--KTAS-EFD--L-SSGEEELP-IPGFVNSVPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPN 230 (475)
T ss_pred hcc--cccc-ccc--c-CCCCCeeE-CCCCCCCCChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHH
Confidence 211 1110 000 0 00012233 89984 577777776443211 12233344455678899999999999999
Q ss_pred HHHHHhcc---CCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHH
Q 012342 210 VLNALSFM---FPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIE 286 (465)
Q Consensus 210 ~~~~~~~~---~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~ 286 (465)
++++++.. +|+ +++|||++........ ..+ ...+.+|.+|||.+++++||||||||+...+.+++.+
T Consensus 231 ~~~~l~~~~~~~p~-v~~vGpl~~~~~~~~~------~~~---~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e 300 (475)
T PLN02167 231 AFDYFSRLPENYPP-VYPVGPILSLKDRTSP------NLD---SSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKE 300 (475)
T ss_pred HHHHHHhhcccCCe-eEEeccccccccccCC------CCC---cchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHH
Confidence 99998764 455 9999999753211000 111 1123579999999988999999999998889999999
Q ss_pred HHHHHHhCCCCEEEEEcCCCCC--CCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCc
Q 012342 287 VAMGLVNSNHPFLWIIRPDLVT--GETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVP 364 (465)
Q Consensus 287 ~~~al~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP 364 (465)
++.+|+.++++|||+++..... .....+|++|.+++.+++++++|+||.+||+|+++|+|||||||||++||+++|||
T Consensus 301 la~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP 380 (475)
T PLN02167 301 IAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVP 380 (475)
T ss_pred HHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCC
Confidence 9999999999999999853211 11234888999999889999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHhhcccceeEEEEecC-----CCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCc
Q 012342 365 MICWPFTGDQPTNGRYVCNEWGVGMEINGD-----DEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGS 439 (465)
Q Consensus 365 ~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~-----~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 439 (465)
||+||+++||+.||+++++++|+|+.+... +..+++++|+++|+++|.+++ +||+||+++++++++++.+|||
T Consensus 381 ~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~--~~r~~a~~~~~~~~~av~~gGs 458 (475)
T PLN02167 381 IATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGED--VPRKKVKEIAEAARKAVMDGGS 458 (475)
T ss_pred EEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999998755889999998631 024799999999999997652 5999999999999999999999
Q ss_pred hHHHHHHHHHHHHhc
Q 012342 440 SSLNLDKLVNEILLS 454 (465)
Q Consensus 440 ~~~~~~~~~~~~~~~ 454 (465)
|.+++++||+.+...
T Consensus 459 S~~~l~~~v~~i~~~ 473 (475)
T PLN02167 459 SFVAVKRFIDDLLGD 473 (475)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999764
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-44 Score=369.49 Aligned_cols=388 Identities=16% Similarity=0.212 Sum_probs=262.1
Q ss_pred CEEEEE-cCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCC-----------
Q 012342 11 VHAVCI-PSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLP----------- 78 (465)
Q Consensus 11 ~~il~~-~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~----------- 78 (465)
.||+++ |.++.+|..-+-.|+++|++|||+||++++.... ..... ...+++.+.++...+
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH-------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC-------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 368766 8899999999999999999999999999874311 00000 001233222210000
Q ss_pred --------------------------CCCCCCC-----c--cc--CCCCCCccCchHHHHHHHc-CCCeEEEcCCchhhh
Q 012342 79 --------------------------ASSDESP-----T--AQ--DAYSLDGFLPFTITAAQQL-GLPIVLFFTISACSF 122 (465)
Q Consensus 79 --------------------------~~~~~~~-----~--~~--~~~~~D~~~~~~~~vA~~l-giP~v~~~~~~~~~~ 122 (465)
....+.. . .. |+-.+|.+..|+..+|+.+ ++|.|.+++......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 0000000 0 00 1111777778888899999 999888766544322
Q ss_pred hhhhhhh-hhhhcCcCCCCCcccccccccCcceeecCCCCCCccCcCCccccc--CCCchhHH-HHHH----HHHHhhcc
Q 012342 123 MGFKQFQ-TFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQS--TDPKDMMF-NLCV----EATENASK 194 (465)
Q Consensus 123 ~~~~~~~-~~~~~~~~P~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~--~~~~~~~~-~~~~----~~~~~~~~ 194 (465)
.. .... .+....|+|..... .+..|.++.++.++-......+... ....+.+. +.+. ...+...+
T Consensus 173 ~~-~~~gg~p~~~syvP~~~~~------~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~ 245 (507)
T PHA03392 173 NF-ETMGAVSRHPVYYPNLWRS------KFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNR 245 (507)
T ss_pred HH-HhhccCCCCCeeeCCcccC------CCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhC
Confidence 11 1122 33445566654332 2234555555544211100000000 00011111 1111 12345567
Q ss_pred cceeeecchhhhhHHHHHHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeec
Q 012342 195 ASAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFG 274 (465)
Q Consensus 195 ~~~~l~~~~~~le~~~~~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~G 274 (465)
.+++|+|+.+.++.+ |+. ++++++|||++...+.. ...++++.+|++.++ +++||||||
T Consensus 246 ~~l~lvns~~~~d~~-----rp~-~p~v~~vGgi~~~~~~~--------------~~l~~~l~~fl~~~~-~g~V~vS~G 304 (507)
T PHA03392 246 VQLLFVNVHPVFDNN-----RPV-PPSVQYLGGLHLHKKPP--------------QPLDDYLEEFLNNST-NGVVYVSFG 304 (507)
T ss_pred CcEEEEecCccccCC-----CCC-CCCeeeecccccCCCCC--------------CCCCHHHHHHHhcCC-CcEEEEECC
Confidence 789999998777765 555 45599999998643210 013567899998865 579999999
Q ss_pred cccC---CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCC
Q 012342 275 SFIF---MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCG 351 (465)
Q Consensus 275 S~~~---~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG 351 (465)
|+.. .+.+.+..+++++++.+.+|||+++... . + ...++|+++.+|+||.+||+|+.+++||||||
T Consensus 305 S~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-------~-~---~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG 373 (507)
T PHA03392 305 SSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-------E-A---INLPANVLTQKWFPQRAVLKHKNVKAFVTQGG 373 (507)
T ss_pred CCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-------C-c---ccCCCceEEecCCCHHHHhcCCCCCEEEecCC
Confidence 9853 4678899999999999999999998542 1 1 12478999999999999999999999999999
Q ss_pred chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 012342 352 WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAE 431 (465)
Q Consensus 352 ~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~ 431 (465)
+||++||+++|||+|++|+++||+.||+++ +++|+|+.+.. ..++.++|.++|+++|+|++ |++||+++++.++
T Consensus 374 ~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~--~~~t~~~l~~ai~~vl~~~~---y~~~a~~ls~~~~ 447 (507)
T PHA03392 374 VQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDT--VTVSAAQLVLAIVDVIENPK---YRKNLKELRHLIR 447 (507)
T ss_pred cccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEecc--CCcCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHH
Confidence 999999999999999999999999999999 88999999988 88999999999999999988 9999999999999
Q ss_pred HHhCCCCchHHHHHHHHHHHHhc
Q 012342 432 EAAAPHGSSSLNLDKLVNEILLS 454 (465)
Q Consensus 432 ~~~~~~g~~~~~~~~~~~~~~~~ 454 (465)
. +.-+..+.+...++.+.+.
T Consensus 448 ~---~p~~~~~~av~~iE~v~r~ 467 (507)
T PHA03392 448 H---QPMTPLHKAIWYTEHVIRN 467 (507)
T ss_pred h---CCCCHHHHHHHHHHHHHhC
Confidence 6 3333344444556665554
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.1e-47 Score=396.42 Aligned_cols=366 Identities=24% Similarity=0.394 Sum_probs=217.8
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCC-C--CCCcc-
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASS-D--ESPTA- 87 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~-~--~~~~~- 87 (465)
||+++|. +.+|+.++..|+++|++|||+||++++.... .+... ....+++..++...+... + .....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS-------KPSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------------S-CCEEEE-----TT------TTHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc-------cccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 7899985 7899999999999999999999999874321 22211 112455555543332210 0 00000
Q ss_pred ------------------------------------cCCC-----------CCCccCchHHHHHHHcCCCeEEEcCCchh
Q 012342 88 ------------------------------------QDAY-----------SLDGFLPFTITAAQQLGLPIVLFFTISAC 120 (465)
Q Consensus 88 ------------------------------------~~~~-----------~~D~~~~~~~~vA~~lgiP~v~~~~~~~~ 120 (465)
..+. .+|.+.+|+..+|+.+++|.+.+.+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~ 152 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPM 152 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSC
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEeccccc
Confidence 0000 06666777788888888888765443222
Q ss_pred hhhhhhhhhhhhhcCcCCCCCcccccccccCcceeecCCCCCCccCcCC----cccccC--CCchhHHHHHHHHHHhhcc
Q 012342 121 SFMGFKQFQTFKEKGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLP----SFIQST--DPKDMMFNLCVEATENASK 194 (465)
Q Consensus 121 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~ 194 (465)
..........+...+|+|..... ....|.+..++.+....... ...... .........-....+.+.+
T Consensus 153 ~~~~~~~~g~p~~psyvP~~~s~------~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (500)
T PF00201_consen 153 YDLSSFSGGVPSPPSYVPSMFSD------FSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSN 226 (500)
T ss_dssp SCCTCCTSCCCTSTTSTTCBCCC------SGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHH
T ss_pred chhhhhccCCCCChHHhcccccc------CCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHH
Confidence 21111111122233444433221 12233333333331110000 000000 0000000000011233345
Q ss_pred cceeeecchhhhhHHHHHHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeec
Q 012342 195 ASAIIIHTFDALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFG 274 (465)
Q Consensus 195 ~~~~l~~~~~~le~~~~~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~G 274 (465)
.+++++|+.+.++.| ++..|+ +++||+++..+++ + .+.++.+|++...++++||||||
T Consensus 227 ~~l~l~ns~~~ld~p-----rp~~p~-v~~vGgl~~~~~~---------~-------l~~~~~~~~~~~~~~~vv~vsfG 284 (500)
T PF00201_consen 227 ASLVLINSHPSLDFP-----RPLLPN-VVEVGGLHIKPAK---------P-------LPEELWNFLDSSGKKGVVYVSFG 284 (500)
T ss_dssp HHHCCSSTEEE---------HHHHCT-STTGCGC-S-------------T-------CHHHHHHHTSTTTTTEEEEEE-T
T ss_pred HHHHhhhccccCcCC-----cchhhc-ccccCcccccccc---------c-------cccccchhhhccCCCCEEEEecC
Confidence 667888887766654 677776 9999999764332 1 24568889988556789999999
Q ss_pred cccCCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCch
Q 012342 275 SFIFMNK-QQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWN 353 (465)
Q Consensus 275 S~~~~~~-~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~ 353 (465)
|.....+ +...++++++++.+.+|||++++. .+. .+++|+++.+|+||.+||.|+++++||||||+|
T Consensus 285 s~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~--------~~~----~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~ 352 (500)
T PF00201_consen 285 SIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE--------PPE----NLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLN 352 (500)
T ss_dssp SSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS--------HGC----HHHTTEEEESS--HHHHHTSTTEEEEEES--HH
T ss_pred cccchhHHHHHHHHHHHHhhCCCccccccccc--------ccc----cccceEEEeccccchhhhhcccceeeeeccccc
Confidence 9875444 458889999999999999999863 112 247899999999999999999999999999999
Q ss_pred hHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 012342 354 SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEE 432 (465)
Q Consensus 354 s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~ 432 (465)
|++||+++|||+|++|+++||+.||+++ ++.|+|+.++. +.++.++|.++|+++|+|++ |++||+++++.++.
T Consensus 353 s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~--~~~~~~~l~~ai~~vl~~~~---y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 353 STQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDK--NDLTEEELRAAIREVLENPS---YKENAKRLSSLFRD 425 (500)
T ss_dssp HHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGG--GC-SHHHHHHHHHHHHHSHH---HHHHHHHHHHTTT-
T ss_pred hhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEe--cCCcHHHHHHHHHHHHhhhH---HHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 88999999998 88999999999999999988 99999999999985
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=9.1e-40 Score=328.88 Aligned_cols=337 Identities=20% Similarity=0.274 Sum_probs=232.6
Q ss_pred EcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCc-cc------
Q 012342 16 IPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT-AQ------ 88 (465)
Q Consensus 16 ~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~-~~------ 88 (465)
+.+|++||++|++.||++|++|||+|+|++++.+.+.+++. |++|..++...+........ ..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~----------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA----------GAEFVLYGSALPPPDNPPENTEEEPIDII 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc----------CCEEEecCCcCccccccccccCcchHHHH
Confidence 35799999999999999999999999999999999999887 78888887554321000000 00
Q ss_pred -----------------------CCCCCCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhhcCcCCCCCcccc
Q 012342 89 -----------------------DAYSLDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKEKGLFPVKDKSCL 145 (465)
Q Consensus 89 -----------------------~~~~~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 145 (465)
|+-.+|.+++++..+|+++|||+|.+++...... .++.. ..|..
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~----~~~~~----- 137 (392)
T TIGR01426 71 EKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEM----VSPAG----- 137 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----ccccc----ccccc-----
Confidence 0000788888999999999999998754321110 00000 00100
Q ss_pred cccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHH------Hh--hcccceeeecchhhhhHHHHHHHhcc
Q 012342 146 TKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEAT------EN--ASKASAIIIHTFDALEQQVLNALSFM 217 (465)
Q Consensus 146 ~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~l~~~~~~le~~~~~~~~~~ 217 (465)
+.+.. ....... ......+....+..+.- .. ....+..+..+. +.+++.++.
T Consensus 138 ------------~~~~~--~~~~~~~-~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~-----~~l~~~~~~ 197 (392)
T TIGR01426 138 ------------EGSAE--EGAIAER-GLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTP-----KAFQPAGET 197 (392)
T ss_pred ------------hhhhh--hhccccc-hhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCC-----hHhCCCccc
Confidence 00000 0000000 00000001111111100 00 011222344443 333333566
Q ss_pred CCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCCCC
Q 012342 218 FPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHP 297 (465)
Q Consensus 218 ~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~ 297 (465)
+|++++++||+...+.+ ...|+....++++|||+|||+.....+.+.++++++.+.+.+
T Consensus 198 ~~~~~~~~Gp~~~~~~~---------------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 256 (392)
T TIGR01426 198 FDDSFTFVGPCIGDRKE---------------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWH 256 (392)
T ss_pred cCCCeEEECCCCCCccc---------------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCe
Confidence 78889999998643211 122665556678999999998766667888899999999999
Q ss_pred EEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhH
Q 012342 298 FLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTN 377 (465)
Q Consensus 298 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~n 377 (465)
++|.++.... ... ....++|+.+.+|+||.++|+++++ +|||||+||++|++++|+|+|++|...||+.|
T Consensus 257 ~i~~~g~~~~-------~~~-~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~ 326 (392)
T TIGR01426 257 VVLSVGRGVD-------PAD-LGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMT 326 (392)
T ss_pred EEEEECCCCC-------hhH-hccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHH
Confidence 9999875421 111 1224678999999999999999998 99999999999999999999999999999999
Q ss_pred HHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 012342 378 GRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEE 432 (465)
Q Consensus 378 a~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~ 432 (465)
|+++ +++|+|+.+.. ..++.++|.++|+++|+|++ |+++++++++++++
T Consensus 327 a~~l-~~~g~g~~l~~--~~~~~~~l~~ai~~~l~~~~---~~~~~~~l~~~~~~ 375 (392)
T TIGR01426 327 ARRI-AELGLGRHLPP--EEVTAEKLREAVLAVLSDPR---YAERLRKMRAEIRE 375 (392)
T ss_pred HHHH-HHCCCEEEecc--ccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHH
Confidence 9999 88999999987 78899999999999999887 99999999999995
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.2e-39 Score=327.27 Aligned_cols=340 Identities=15% Similarity=0.165 Sum_probs=226.4
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCc----
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPT---- 86 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~---- 86 (465)
|||+|+++|+.||++|++.||++|++|||+|+|++++.+...+++. |++|+++++..+....+...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~----------G~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA----------GLEFVPVGGDPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc----------CCceeeCCCCHHHHHhhhhhcccc
Confidence 6999999999999999999999999999999999999988888876 78888887543221000000
Q ss_pred ---------------------------------ccCCCCCCccCchHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhhhh
Q 012342 87 ---------------------------------AQDAYSLDGFLPFTITAAQQLGLPIVLFFTISACSFMGFKQFQTFKE 133 (465)
Q Consensus 87 ---------------------------------~~~~~~~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 133 (465)
..|+-.+|.+.+++..+|+++|||++.+++++.......
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~-------- 142 (401)
T cd03784 71 LLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF-------- 142 (401)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC--------
Confidence 000000888888889999999999999877643221100
Q ss_pred cCcCCCCCcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhc---------ccceeeecchh
Q 012342 134 KGLFPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENAS---------KASAIIIHTFD 204 (465)
Q Consensus 134 ~~~~P~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~ 204 (465)
.|. . +..+ ...............+............ ..+..+....
T Consensus 143 ---~~~-----------------~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~- 197 (401)
T cd03784 143 ---PPP-----------------L-GRAN---LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFS- 197 (401)
T ss_pred ---CCc-----------------c-chHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecC-
Confidence 000 0 0000 0000000000000000000111111110 0111111111
Q ss_pred hhhHHHHHHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCH-HH
Q 012342 205 ALEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNK-QQ 283 (465)
Q Consensus 205 ~le~~~~~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~-~~ 283 (465)
+.+....+.++.+..++|..+...+.. ...+.++..|++.. +++|||+|||+..... +.
T Consensus 198 ----~~~~~~~~~~~~~~~~~g~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~ 257 (401)
T cd03784 198 ----PAVLPPPPDWPRFDLVTGYGFRDVPYN--------------GPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEAL 257 (401)
T ss_pred ----cccCCCCCCccccCcEeCCCCCCCCCC--------------CCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHH
Confidence 111112344566577775322211110 11244567788653 5699999999976444 56
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCC
Q 012342 284 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGV 363 (465)
Q Consensus 284 ~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~Gv 363 (465)
...+++++...+.++||+++..... . ...++|+++.+|+||.++|+++++ ||||||+||++|++++||
T Consensus 258 ~~~~~~a~~~~~~~~i~~~g~~~~~-------~---~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~Gv 325 (401)
T cd03784 258 ARLDVEAVATLGQRAILSLGWGGLG-------A---EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGV 325 (401)
T ss_pred HHHHHHHHHHcCCeEEEEccCcccc-------c---cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCC
Confidence 7779999999999999999865321 1 124689999999999999999999 999999999999999999
Q ss_pred cEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 012342 364 PMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEE 432 (465)
Q Consensus 364 P~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~ 432 (465)
|+|++|+..||+.||+++ +++|+|+.+.. ..++.++|.++|+++++++ ++++++++++.+++
T Consensus 326 P~v~~P~~~dQ~~~a~~~-~~~G~g~~l~~--~~~~~~~l~~al~~~l~~~----~~~~~~~~~~~~~~ 387 (401)
T cd03784 326 PQLVVPFFGDQPFWAARV-AELGAGPALDP--RELTAERLAAALRRLLDPP----SRRRAAALLRRIRE 387 (401)
T ss_pred CEEeeCCCCCcHHHHHHH-HHCCCCCCCCc--ccCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHh
Confidence 999999999999999999 88999999977 6789999999999999854 66777778777764
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=9.1e-40 Score=339.13 Aligned_cols=392 Identities=30% Similarity=0.469 Sum_probs=241.2
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCC--CCCCCeeEEeCCCCCCCCCCC----
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSL--DGLPSFRFEAIPDGLPASSDE---- 83 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~--~~~~~i~f~~l~~~~~~~~~~---- 83 (465)
+.|++++++|++||++|++.+|+.|+++||+||++++................ .......+...+++++.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 56999999999999999999999999999999999987765443221000000 000112222222222221000
Q ss_pred -CC-----------------------cc--cCCCCCCccCchHHHHHHHcC-CCeEEEcCCchhhhhhhhhhhhhhhcCc
Q 012342 84 -SP-----------------------TA--QDAYSLDGFLPFTITAAQQLG-LPIVLFFTISACSFMGFKQFQTFKEKGL 136 (465)
Q Consensus 84 -~~-----------------------~~--~~~~~~D~~~~~~~~vA~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~~~~ 136 (465)
.. .. -+...+|.+..|...+|.... ++..++.+.++.......+.+ ..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~----~~~ 160 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP----LSY 160 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc----ccc
Confidence 00 00 000007777777777777665 888888777666554433222 123
Q ss_pred CCCCCcccccccccCcceeecCCCCCCccCcCCcccccCCCchhHHHHHH-----------HHHHhhcccceeeecchhh
Q 012342 137 FPVKDKSCLTKEYLNSLIDWIPGMKDIRIRDLPSFIQSTDPKDMMFNLCV-----------EATENASKASAIIIHTFDA 205 (465)
Q Consensus 137 ~P~~~~~~~~~~~~~~~~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~ 205 (465)
.|...... ....+....+..++....++................. ...+...+.+..++|+...
T Consensus 161 ~p~~~~~~-----~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~ 235 (496)
T KOG1192|consen 161 VPSPFSLS-----SGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPL 235 (496)
T ss_pred cCcccCcc-----ccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcc
Confidence 44321110 0011221111111111112211110000000000010 1112333444555555433
Q ss_pred hhHHHHHHHhccCCCceeeecccccccccchhhccccccCCCCCccchhhhhhhcccCCCC--ceeEEeecccc---CCC
Q 012342 206 LEQQVLNALSFMFPHHLFTIGPLQLLLNQTEEQDGMLNSIGYNLLKEETECLQWLDCKEPK--SVIYVNFGSFI---FMN 280 (465)
Q Consensus 206 le~~~~~~~~~~~p~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~V~vs~GS~~---~~~ 280 (465)
++.. .++ ..+++++|||+....... ....+.+|++..+.. ++|||||||+. ..+
T Consensus 236 ~~~~----~~~-~~~~v~~IG~l~~~~~~~----------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp 294 (496)
T KOG1192|consen 236 LDFE----PRP-LLPKVIPIGPLHVKDSKQ----------------KSPLPLEWLDILDESRHSVVYISFGSMVNSADLP 294 (496)
T ss_pred cCCC----CCC-CCCCceEECcEEecCccc----------------cccccHHHHHHHhhccCCeEEEECCcccccccCC
Confidence 3331 122 234499999998652210 001356677766554 89999999998 789
Q ss_pred HHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhh-hcCCCcceeeecCCchhHHHH
Q 012342 281 KQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEV-LKHPSIGGFLTHCGWNSIVES 358 (465)
Q Consensus 281 ~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~-l~~~~~~~~i~hgG~~s~~ea 358 (465)
.++..+++.+++.+ +++|||+.+...... +++++.++.++|+...+|+||.++ |.|+++|+||||||||||+|+
T Consensus 295 ~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~----~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~ 370 (496)
T KOG1192|consen 295 EEQKKELAKALESLQGVTFLWKYRPDDSIY----FPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLES 370 (496)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecCCcchh----hhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHH
Confidence 99999999999999 899999999653211 122222111347778899999998 699999999999999999999
Q ss_pred HhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCC
Q 012342 359 LCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHG 438 (465)
Q Consensus 359 l~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g 438 (465)
+++|||+|++|+++||+.||+++++++++++... .+++.+.+..++.+++.+++ |+++|+++++.++. ...
T Consensus 371 ~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~---~~~~~~~~~~~~~~il~~~~---y~~~~~~l~~~~~~---~p~ 441 (496)
T KOG1192|consen 371 IYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDK---RDLVSEELLEAIKEILENEE---YKEAAKRLSEILRD---QPI 441 (496)
T ss_pred HhcCCceecCCccccchhHHHHHHhCCCEEEEeh---hhcCcHHHHHHHHHHHcChH---HHHHHHHHHHHHHc---CCC
Confidence 9999999999999999999999966666666665 55666669999999999988 99999999999884 344
Q ss_pred chHHHHH
Q 012342 439 SSSLNLD 445 (465)
Q Consensus 439 ~~~~~~~ 445 (465)
+. ..+.
T Consensus 442 ~~-~~~~ 447 (496)
T KOG1192|consen 442 SP-ELAV 447 (496)
T ss_pred CH-HHHH
Confidence 44 4444
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-37 Score=310.12 Aligned_cols=167 Identities=23% Similarity=0.341 Sum_probs=146.8
Q ss_pred CCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCc
Q 012342 264 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSI 343 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~ 343 (465)
.++++||+|+||.... .+.++.+++++..++.++|+.++... . ....+++|+++.+|+||.++|+++++
T Consensus 235 ~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~---------~-~~~~~p~n~~v~~~~p~~~~l~~ad~ 303 (406)
T COG1819 235 ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGAR---------D-TLVNVPDNVIVADYVPQLELLPRADA 303 (406)
T ss_pred CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccccc---------c-ccccCCCceEEecCCCHHHHhhhcCE
Confidence 3467999999999866 88899999999999999999997621 0 11235789999999999999999999
Q ss_pred ceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHH
Q 012342 344 GGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKA 423 (465)
Q Consensus 344 ~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a 423 (465)
||||||+|||+|||++|||+|++|...||+.||.++ +++|+|+.++. +.++.+.|+++|+++|+|++ |++++
T Consensus 304 --vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv-e~~G~G~~l~~--~~l~~~~l~~av~~vL~~~~---~~~~~ 375 (406)
T COG1819 304 --VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV-EELGAGIALPF--EELTEERLRAAVNEVLADDS---YRRAA 375 (406)
T ss_pred --EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH-HHcCCceecCc--ccCCHHHHHHHHHHHhcCHH---HHHHH
Confidence 999999999999999999999999999999999999 89999999987 78999999999999999998 99999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Q 012342 424 MEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 454 (465)
Q Consensus 424 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 454 (465)
+++++.+++. +| ...+.+.+++....
T Consensus 376 ~~~~~~~~~~---~g--~~~~a~~le~~~~~ 401 (406)
T COG1819 376 ERLAEEFKEE---DG--PAKAADLLEEFARE 401 (406)
T ss_pred HHHHHHhhhc---cc--HHHHHHHHHHHHhc
Confidence 9999999973 44 45667777765543
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.84 E-value=6.3e-20 Score=180.98 Aligned_cols=146 Identities=21% Similarity=0.222 Sum_probs=109.9
Q ss_pred CCCCceeEEeeccccCCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeecc-Ch-hhhhc
Q 012342 263 KEPKSVIYVNFGSFIFMNK-QQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWC-PQ-EEVLK 339 (465)
Q Consensus 263 ~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-p~-~~~l~ 339 (465)
.+++++|+|..||...... +.+.+++..+.. +.+++|.+|.+. +.+. ... ..+..+.+|+ ++ .+++.
T Consensus 182 ~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~-------~~~~-~~~-~~~~~~~~f~~~~m~~~~~ 251 (352)
T PRK12446 182 SRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN-------LDDS-LQN-KEGYRQFEYVHGELPDILA 251 (352)
T ss_pred CCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch-------HHHH-Hhh-cCCcEEecchhhhHHHHHH
Confidence 3456799999999986444 344455555532 478899888652 1111 111 1345567887 54 46999
Q ss_pred CCCcceeeecCCchhHHHHHhcCCcEEecCCC-----CChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 012342 340 HPSIGGFLTHCGWNSIVESLCSGVPMICWPFT-----GDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 340 ~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~-----~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~ 414 (465)
++++ +|||||.+|+.|++++|+|+|++|+. .||..||+.+ ++.|+|..+.. ++++++.|.++|.++++|+
T Consensus 252 ~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l-~~~g~~~~l~~--~~~~~~~l~~~l~~ll~~~ 326 (352)
T PRK12446 252 ITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF-ERQGYASVLYE--EDVTVNSLIKHVEELSHNN 326 (352)
T ss_pred hCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH-HHCCCEEEcch--hcCCHHHHHHHHHHHHcCH
Confidence 9999 99999999999999999999999984 4899999999 77999999987 8899999999999999876
Q ss_pred hHHHHHHHHHH
Q 012342 415 KGKQMRNKAME 425 (465)
Q Consensus 415 ~~~~~~~~a~~ 425 (465)
+ .|++++++
T Consensus 327 ~--~~~~~~~~ 335 (352)
T PRK12446 327 E--KYKTALKK 335 (352)
T ss_pred H--HHHHHHHH
Confidence 4 36555544
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.82 E-value=1.1e-18 Score=170.83 Aligned_cols=121 Identities=20% Similarity=0.331 Sum_probs=98.5
Q ss_pred CceeEEeeccccCCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeecc--ChhhhhcCCC
Q 012342 266 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSN-HPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWC--PQEEVLKHPS 342 (465)
Q Consensus 266 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--p~~~~l~~~~ 342 (465)
++.|+|+||..... .++++++..+ ..|++. +.... +...+|+.+.+|. ...++|..++
T Consensus 192 ~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~------------~~~~~ni~~~~~~~~~~~~~m~~ad 252 (318)
T PF13528_consen 192 EPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA------------DPRPGNIHVRPFSTPDFAELMAAAD 252 (318)
T ss_pred CCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc------------cccCCCEEEeecChHHHHHHHHhCC
Confidence 45899999997643 5566666665 676666 53310 1126788888876 4467999999
Q ss_pred cceeeecCCchhHHHHHhcCCcEEecCC--CCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHH
Q 012342 343 IGGFLTHCGWNSIVESLCSGVPMICWPF--TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 410 (465)
Q Consensus 343 ~~~~i~hgG~~s~~eal~~GvP~i~~P~--~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~ 410 (465)
+ +|+|||+||++|++++|+|+|++|. +.||..||+++ +++|+|+.+.. ++++++.|+++|+++
T Consensus 253 ~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l-~~~G~~~~~~~--~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 253 L--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKL-EELGLGIVLSQ--EDLTPERLAEFLERL 317 (318)
T ss_pred E--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHH-HHCCCeEEccc--ccCCHHHHHHHHhcC
Confidence 9 9999999999999999999999999 78999999999 89999999987 889999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.8e-16 Score=154.88 Aligned_cols=148 Identities=20% Similarity=0.248 Sum_probs=111.0
Q ss_pred CCceeEEeeccccCCC-HHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhc-cC-ceEeeccChh-hhhcC
Q 012342 265 PKSVIYVNFGSFIFMN-KQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK-EK-GFVASWCPQE-EVLKH 340 (465)
Q Consensus 265 ~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~p~~-~~l~~ 340 (465)
++++|+|.-||.+... .+.+.+++..+.+ +..+++.++.+. .+....... .+ +.+.+|..++ .++..
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~--------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ 252 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND--------LEELKSAYNELGVVRVLPFIDDMAALLAA 252 (357)
T ss_pred CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch--------HHHHHHHHhhcCcEEEeeHHhhHHHHHHh
Confidence 4679999999987543 2445555555555 567777777552 122222222 22 6678999886 49999
Q ss_pred CCcceeeecCCchhHHHHHhcCCcEEecCC-CC---ChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh-
Q 012342 341 PSIGGFLTHCGWNSIVESLCSGVPMICWPF-TG---DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK- 415 (465)
Q Consensus 341 ~~~~~~i~hgG~~s~~eal~~GvP~i~~P~-~~---DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~- 415 (465)
+++ +||++|.+|+.|.+++|+|+|.+|. .+ ||..||+.+ ++.|.|+.++. .++|.+++.+.|.+++.+++
T Consensus 253 ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l-~~~gaa~~i~~--~~lt~~~l~~~i~~l~~~~~~ 327 (357)
T COG0707 253 ADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL-EKAGAALVIRQ--SELTPEKLAELILRLLSNPEK 327 (357)
T ss_pred ccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH-HhCCCEEEecc--ccCCHHHHHHHHHHHhcCHHH
Confidence 999 9999999999999999999999998 44 888899999 88999999998 88999999999999998754
Q ss_pred HHHHHHHHHHH
Q 012342 416 GKQMRNKAMEW 426 (465)
Q Consensus 416 ~~~~~~~a~~l 426 (465)
-++|+++|+++
T Consensus 328 l~~m~~~a~~~ 338 (357)
T COG0707 328 LKAMAENAKKL 338 (357)
T ss_pred HHHHHHHHHhc
Confidence 12344444433
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.73 E-value=2.8e-16 Score=153.73 Aligned_cols=125 Identities=18% Similarity=0.279 Sum_probs=91.2
Q ss_pred CceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccC--hhhhhcCCCc
Q 012342 266 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP--QEEVLKHPSI 343 (465)
Q Consensus 266 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p--~~~~l~~~~~ 343 (465)
++.|+|.+||.. . ..+++++.+.+. +.++++.... ..+ .+++|+.+.+|.| ..++|+.+++
T Consensus 188 ~~~iLv~~g~~~---~---~~l~~~l~~~~~-~~~i~~~~~~------~~~----~~~~~v~~~~~~~~~~~~~l~~ad~ 250 (321)
T TIGR00661 188 EDYILVYIGFEY---R---YKILELLGKIAN-VKFVCYSYEV------AKN----SYNENVEIRRITTDNFKELIKNAEL 250 (321)
T ss_pred CCcEEEECCcCC---H---HHHHHHHHhCCC-eEEEEeCCCC------Ccc----ccCCCEEEEECChHHHHHHHHhCCE
Confidence 457888888743 2 344666766553 2333332211 111 2357889999997 3568899998
Q ss_pred ceeeecCCchhHHHHHhcCCcEEecCCCC--ChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 344 GGFLTHCGWNSIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 344 ~~~i~hgG~~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
+|||||++|++|++++|+|+|++|... ||..||+.+ ++.|+|+.+.. .++ ++.+++.++++++.
T Consensus 251 --vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~~l~~--~~~---~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 251 --VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGIALEY--KEL---RLLEAILDIRNMKR 316 (321)
T ss_pred --EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEEEcCh--hhH---HHHHHHHhcccccc
Confidence 999999999999999999999999954 899999999 88999999866 444 66667777777765
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.62 E-value=1.4e-13 Score=136.92 Aligned_cols=115 Identities=14% Similarity=0.193 Sum_probs=89.6
Q ss_pred CceEeeccC-hhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCC----CCChhhHHHhhcccceeEEEEecCCCCCC
Q 012342 325 KGFVASWCP-QEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF----TGDQPTNGRYVCNEWGVGMEINGDDEDVI 399 (465)
Q Consensus 325 ~~~v~~~~p-~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~----~~DQ~~na~~~~~~~g~g~~~~~~~~~~~ 399 (465)
++.+.+|+. ..+++..+++ +|+|+|.++++||+++|+|+|++|. ..+|..|+..+ .+.|.|+.+.. ++++
T Consensus 236 ~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i-~~~~~g~~~~~--~~~~ 310 (357)
T PRK00726 236 NAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARAL-VDAGAALLIPQ--SDLT 310 (357)
T ss_pred cEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHH-HHCCCEEEEEc--ccCC
Confidence 367789985 4679999999 9999999999999999999999997 46899999999 77899999977 6778
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 012342 400 RNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 451 (465)
Q Consensus 400 ~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 451 (465)
.++|.++|.++++|++ ++++..+-+++.. +..+..+.++.+.+.+
T Consensus 311 ~~~l~~~i~~ll~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 311 PEKLAEKLLELLSDPE---RLEAMAEAARALG----KPDAAERLADLIEELA 355 (357)
T ss_pred HHHHHHHHHHHHcCHH---HHHHHHHHHHhcC----CcCHHHHHHHHHHHHh
Confidence 9999999999999876 5544444333322 3455555555554433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.53 E-value=2.2e-12 Score=127.79 Aligned_cols=138 Identities=15% Similarity=0.149 Sum_probs=97.6
Q ss_pred CCceeEEeeccccCCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHh---ccCceEeecc-Chhhhhc
Q 012342 265 PKSVIYVNFGSFIFMNK-QQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA---KEKGFVASWC-PQEEVLK 339 (465)
Q Consensus 265 ~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~-p~~~~l~ 339 (465)
++.+|++..|+...... +.+.+++..+...+..+++..|.+. .+.+.+.+ .+|+.+.+|+ +...+|.
T Consensus 180 ~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~--------~~~l~~~~~~~~~~v~~~g~~~~~~~~l~ 251 (350)
T cd03785 180 GKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD--------LEEVKKAYEELGVNYEVFPFIDDMAAAYA 251 (350)
T ss_pred CCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc--------HHHHHHHHhccCCCeEEeehhhhHHHHHH
Confidence 34456665566542221 2233444555433445566666541 12232222 3588889998 4467999
Q ss_pred CCCcceeeecCCchhHHHHHhcCCcEEecCC----CCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 340 HPSIGGFLTHCGWNSIVESLCSGVPMICWPF----TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 340 ~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~----~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
.+++ +|+++|.+|+.||+++|+|+|+.|. ..+|..|+..+ .+.|+|+.+.. ...+.+++.++|.++++|++
T Consensus 252 ~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l-~~~g~g~~v~~--~~~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 252 AADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARAL-VKAGAAVLIPQ--EELTPERLAAALLELLSDPE 326 (350)
T ss_pred hcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHH-HhCCCEEEEec--CCCCHHHHHHHHHHHhcCHH
Confidence 9999 9999999999999999999999986 45788999998 66799998875 55689999999999998764
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.43 E-value=1.9e-11 Score=114.62 Aligned_cols=334 Identities=14% Similarity=0.154 Sum_probs=193.6
Q ss_pred CCCEEEEEcC--CCCccHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 012342 9 SKVHAVCIPS--PFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDES 84 (465)
Q Consensus 9 ~~~~il~~~~--~~~GH~~P~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~ 84 (465)
+.++|+|++. .+.||+.-.+.+|..|++. |.+|+++|+..-..-+ ..-.+++|+.+|.-.... +-
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F---------~~~~gVd~V~LPsl~k~~--~G 76 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGF---------PGPAGVDFVKLPSLIKGD--NG 76 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCC---------CCcccCceEecCceEecC--CC
Confidence 3569999998 5899999999999999998 9999999985533111 111389999999543322 11
Q ss_pred C-cccCCCC-CCccC----chHHHHHHHcCCCeEEEcCCchhhhhhhhhhhhh-hhcCcCCCCCcccccccccCcceeec
Q 012342 85 P-TAQDAYS-LDGFL----PFTITAAQQLGLPIVLFFTISACSFMGFKQFQTF-KEKGLFPVKDKSCLTKEYLNSLIDWI 157 (465)
Q Consensus 85 ~-~~~~~~~-~D~~~----~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~-~~~~~~P~~~~~~~~~~~~~~~~~~~ 157 (465)
+ ...+... .+-+. ......++.+.-..+.+=..+..........-.. ...+.. . .
T Consensus 77 ~~~~~d~~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~---------------~---v 138 (400)
T COG4671 77 EYGLVDLDGDLEETKKLRSQLILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTR---------------L---V 138 (400)
T ss_pred ceeeeecCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCc---------------c---e
Confidence 1 1111100 00000 0123456777766655533332221111111000 000000 0 0
Q ss_pred CCCCCCccCcCCcccccCCCchhHHHHHHHHHHhhcccceeeecchhhhhHHHHHHHh-ccCCCceeeecccccccccch
Q 012342 158 PGMKDIRIRDLPSFIQSTDPKDMMFNLCVEATENASKASAIIIHTFDALEQQVLNALS-FMFPHHLFTIGPLQLLLNQTE 236 (465)
Q Consensus 158 p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~-~~~p~~v~~vGpl~~~~~~~~ 236 (465)
-++ ..+.+.+......+........+.+. -|.+++...+++..+.-.+.- +.....+.|+|.+.-.-+..
T Consensus 139 L~l--r~i~D~p~~~~~~w~~~~~~~~I~r~------yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~- 209 (400)
T COG4671 139 LGL--RSIRDIPQELEADWRRAETVRLINRF------YDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHL- 209 (400)
T ss_pred eeh--HhhhhchhhhccchhhhHHHHHHHHh------heEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcCC-
Confidence 000 01222332221111111111222222 245555554444332111100 11233499999982111110
Q ss_pred hhccccccCCCCCccchhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHh-CCCC--EEEEEcCCCCCCCcCC
Q 012342 237 EQDGMLNSIGYNLLKEETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVN-SNHP--FLWIIRPDLVTGETAD 313 (465)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~l~~~~~~~~~~~~~~ 313 (465)
..+ |.. .+++--|+||-|.-. ...+.+...++|... .+.+ .++++|..
T Consensus 210 -------~~p------------~~~-~pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~-------- 260 (400)
T COG4671 210 -------PLP------------PHE-APEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPF-------- 260 (400)
T ss_pred -------CCC------------CcC-CCccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCC--------
Confidence 011 111 133457888877654 356667776666544 4444 77777765
Q ss_pred CchhHHHH----hc--cCceEeeccCh-hhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCC---CChhhHHHhhcc
Q 012342 314 LPAEFEVK----AK--EKGFVASWCPQ-EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFT---GDQPTNGRYVCN 383 (465)
Q Consensus 314 ~~~~~~~~----~~--~~~~v~~~~p~-~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~---~DQ~~na~~~~~ 383 (465)
+|..-.++ .+ +++.+..|..+ ..++..++. +|+-||+||++|-+++|+|.|++|.. .+|-.-|.|+ +
T Consensus 261 MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl-~ 337 (400)
T COG4671 261 MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRL-E 337 (400)
T ss_pred CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHH-H
Confidence 66654443 23 56888999877 568888888 99999999999999999999999994 4899999999 8
Q ss_pred cceeEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 012342 384 EWGVGMEINGDDEDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 384 ~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~ 414 (465)
++|+.-.+.. +.++++.+.++|...++.+
T Consensus 338 ~LGL~dvL~p--e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 338 ELGLVDVLLP--ENLTPQNLADALKAALARP 366 (400)
T ss_pred hcCcceeeCc--ccCChHHHHHHHHhcccCC
Confidence 9999988888 8999999999999999744
No 35
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.42 E-value=8.6e-15 Score=129.24 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=97.7
Q ss_pred eeEEeeccccCCCH-HHHHHHHHHHHh--CCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccC-hhhhhcCCCc
Q 012342 268 VIYVNFGSFIFMNK-QQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP-QEEVLKHPSI 343 (465)
Q Consensus 268 ~V~vs~GS~~~~~~-~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~l~~~~~ 343 (465)
+|+|+.||.....- +.+..++..+.. ....+++.+|........ .. ..+.+.++.+.+|.+ ...++..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~----~~-~~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELK----IK-VENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHC----CC-HCCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHH----HH-HhccCCcEEEEechhhHHHHHHHcCE
Confidence 48999998763211 122233333333 257888888866321100 00 111125788999999 5679999999
Q ss_pred ceeeecCCchhHHHHHhcCCcEEecCCCC----ChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 344 GGFLTHCGWNSIVESLCSGVPMICWPFTG----DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 344 ~~~i~hgG~~s~~eal~~GvP~i~~P~~~----DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
+|||||.||++|++.+|+|+|++|... +|..||..+ ++.|+|+.+.. ...+.+.|.++|.+++.++.
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~--~~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDE--SELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSEC--CC-SCCCHHHHHHCHCCCHH
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCc--ccCCHHHHHHHHHHHHcCcH
Confidence 999999999999999999999999988 999999999 77899999887 77889999999999998764
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.41 E-value=4.9e-11 Score=118.02 Aligned_cols=78 Identities=17% Similarity=0.408 Sum_probs=67.5
Q ss_pred ChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCC---CChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHH
Q 012342 333 PQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFT---GDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVRE 409 (465)
Q Consensus 333 p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~---~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ 409 (465)
+-..+|..+++ +|+++|.++++||+++|+|+|+.|.. .+|..|+..+ ++.+.|..+.. ++.+.++|.++|.+
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G~~~~~--~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAGLVIRQ--KELLPEKLLEALLK 317 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCEEEEec--ccCCHHHHHHHHHH
Confidence 44679999999 99999988999999999999999873 4678898888 67889988876 66789999999999
Q ss_pred HhcCCh
Q 012342 410 MMEGEK 415 (465)
Q Consensus 410 ~l~~~~ 415 (465)
+++|++
T Consensus 318 ll~~~~ 323 (348)
T TIGR01133 318 LLLDPA 323 (348)
T ss_pred HHcCHH
Confidence 998865
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.35 E-value=7.3e-11 Score=118.21 Aligned_cols=173 Identities=9% Similarity=-0.059 Sum_probs=109.9
Q ss_pred CCCceeEEeeccccCCCHHHHHHHHHHHHh---C--CCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeecc-Chhhh
Q 012342 264 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVN---S--NHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWC-PQEEV 337 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~---~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-p~~~~ 337 (465)
+++++|.+-.||....-...+..++++++. . +.++++......... .-+.+.+....+..+..+. ....+
T Consensus 189 ~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~ 264 (385)
T TIGR00215 189 HNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRL----QFEQIKAEYGPDLQLHLIDGDARKA 264 (385)
T ss_pred CCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHH----HHHHHHHHhCCCCcEEEECchHHHH
Confidence 345678887788754212334445544433 2 334555544321000 0011111221222332222 33569
Q ss_pred hcCCCcceeeecCCchhHHHHHhcCCcEEec----CCCC---------ChhhHHHhhcccceeEEEEecCCCCCCHHHHH
Q 012342 338 LKHPSIGGFLTHCGWNSIVESLCSGVPMICW----PFTG---------DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVE 404 (465)
Q Consensus 338 l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~----P~~~---------DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~ 404 (465)
+..+|+ +|+-.|..|+ |++.+|+|+|++ |+.. .|..|+..+ ...++...+.. +++|++.|.
T Consensus 265 l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil-~~~~~~pel~q--~~~~~~~l~ 338 (385)
T TIGR00215 265 MFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNIL-ANRLLVPELLQ--EECTPHPLA 338 (385)
T ss_pred HHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHh-cCCccchhhcC--CCCCHHHHH
Confidence 999999 9999999888 999999999999 7732 267799988 66788888877 889999999
Q ss_pred HHHHHHhcCC----hHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012342 405 KLVREMMEGE----KGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVN 449 (465)
Q Consensus 405 ~ai~~~l~~~----~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 449 (465)
+.+.++|.|+ + ++++.++--+++++.++++|.+.+..+.+++
T Consensus 339 ~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 339 IALLLLLENGLKAYK---EMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred HHHHHHhcCCcccHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 9999999988 6 4555544444555555567877777665543
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.32 E-value=2.7e-10 Score=108.91 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=79.1
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHHHH--hccCceEeeccChh-hhhcCC
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQE-EVLKHP 341 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~p~~-~~l~~~ 341 (465)
+.|+|+||...... ....++++|.+. +.++.+++|.... ..+.+.+. ...|+.+..|++++ .+|..+
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~------~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~a 242 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP------NLDELKKFAKEYPNIILFIDVENMAELMNEA 242 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc------CHHHHHHHHHhCCCEEEEeCHHHHHHHHHHC
Confidence 57999999766433 344566666553 4577888886532 22233322 24578889999986 699999
Q ss_pred CcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhh
Q 012342 342 SIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYV 381 (465)
Q Consensus 342 ~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~ 381 (465)
++ +|++|| +|++|+++.|+|+|++|+..+|..||+.+
T Consensus 243 Dl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 243 DL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred CE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 99 999999 99999999999999999999999999853
No 39
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.25 E-value=4.8e-10 Score=112.47 Aligned_cols=165 Identities=16% Similarity=0.223 Sum_probs=109.4
Q ss_pred CCceeEEeeccccCCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCcCCCchhHHH---HhccCceEeeccChh-hhhc
Q 012342 265 PKSVIYVNFGSFIFMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEV---KAKEKGFVASWCPQE-EVLK 339 (465)
Q Consensus 265 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~p~~-~~l~ 339 (465)
++++|++..|+.... +.+..+++++.+. +.+++++.+.+.. +.+.+.+ ..++++.+.+|+++. .++.
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~------~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA------LKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH------HHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 345777777776532 2345666676543 4567766664311 1122222 223578889999875 6999
Q ss_pred CCCcceeeecCCchhHHHHHhcCCcEEec-CCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHH
Q 012342 340 HPSIGGFLTHCGWNSIVESLCSGVPMICW-PFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQ 418 (465)
Q Consensus 340 ~~~~~~~i~hgG~~s~~eal~~GvP~i~~-P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~ 418 (465)
.+++ +|+..|..|+.||+++|+|+|+. |....|..|+..+ ++.|+++... +.+++.++|.++++|++
T Consensus 273 ~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~~------~~~~l~~~i~~ll~~~~--- 340 (380)
T PRK13609 273 VTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVIR------DDEEVFAKTEALLQDDM--- 340 (380)
T ss_pred hccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEEC------CHHHHHHHHHHHHCCHH---
Confidence 9998 99999989999999999999985 6666778899888 6778887652 57999999999998865
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Q 012342 419 MRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 453 (465)
Q Consensus 419 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 453 (465)
.+++ +++..++ +..+.+.++.++.+++.+..
T Consensus 341 ~~~~---m~~~~~~-~~~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 341 KLLQ---MKEAMKS-LYLPEPADHIVDDILAENHV 371 (380)
T ss_pred HHHH---HHHHHHH-hCCCchHHHHHHHHHHhhhh
Confidence 3322 2222222 12334555555655555543
No 40
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.20 E-value=6.4e-12 Score=107.21 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=49.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCC
Q 012342 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDG 76 (465)
Q Consensus 13 il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~ 76 (465)
|+|++.|+.||++|+++||++|.+|||+|++++++.+.+.+++. |++|++++..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~----------Gl~~~~~~~~ 54 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA----------GLEFVPIPGD 54 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT----------T-EEEESSSC
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc----------CceEEEecCC
Confidence 78999999999999999999999999999999999999999887 8999999865
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.16 E-value=1.8e-09 Score=108.29 Aligned_cols=107 Identities=11% Similarity=0.078 Sum_probs=67.7
Q ss_pred hhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCC--------ChhhH-----HHhhcccceeEEEEecCCCCCCHH
Q 012342 335 EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTG--------DQPTN-----GRYVCNEWGVGMEINGDDEDVIRN 401 (465)
Q Consensus 335 ~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~--------DQ~~n-----a~~~~~~~g~g~~~~~~~~~~~~~ 401 (465)
..++..+++ +|+.+|.+++ |++.+|+|+|+.|-.. .|..| +..+ ...+++..+.. ...+++
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~--~~~~~~ 329 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLL-AGRELVPELLQ--EEATPE 329 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHh-cCCCcchhhcC--CCCCHH
Confidence 568999999 9999998887 9999999999985432 12112 1222 22333434443 567899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 012342 402 EVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 451 (465)
Q Consensus 402 ~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 451 (465)
++.++|.++++|++ .+++..+-.+.+++.. ..+++.+.++.+.+.+
T Consensus 330 ~l~~~i~~ll~~~~---~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 330 KLARALLPLLADGA---RRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred HHHHHHHHHhcCHH---HHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 99999999999886 4433333322223222 3455655555555444
No 42
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.05 E-value=4.1e-07 Score=89.67 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=87.2
Q ss_pred ceeEEeeccccC-CCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhh---hhcCC
Q 012342 267 SVIYVNFGSFIF-MNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEE---VLKHP 341 (465)
Q Consensus 267 ~~V~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~---~l~~~ 341 (465)
..+++..|+... ...+.+.++++.+... +..++++..+.. .+.+. ...+++.+.+|+++.+ ++..+
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~--------~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~ 267 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPA--------RARLE-ARYPNVHFLGFLDGEELAAAYASA 267 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCch--------HHHHh-ccCCcEEEEeccCHHHHHHHHHhC
Confidence 466777787653 3345555555555442 345554443221 11111 2356888999998754 89999
Q ss_pred CcceeeecCC----chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 342 SIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 342 ~~~~~i~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
++ +|..+. .++++||+++|+|+|+.+..+ +...+ ++.+.|..+. .-+.+++.++|.+++.|++
T Consensus 268 d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~----~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 268 DV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVE----PGDAEAFAAALAALLADPE 334 (364)
T ss_pred CE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcC----CCCHHHHHHHHHHHHcCHH
Confidence 98 886654 478999999999999987654 44455 6668887774 4578889999999998875
No 43
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.94 E-value=2.3e-08 Score=100.62 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=109.5
Q ss_pred CCCceeEEeeccccCCCHHHHHHHHHHH-Hh-CCCCEEEEEcCCCCCCCcCCCchhHHHH--hccCceEeeccChh-hhh
Q 012342 264 EPKSVIYVNFGSFIFMNKQQLIEVAMGL-VN-SNHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQE-EVL 338 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~~~~~~al-~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~p~~-~~l 338 (465)
+++++|++..|+... ...+..+++++ +. .+.+++++.|.+.. +-+.+.+. ..+++.+.+|+++. .++
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~------l~~~l~~~~~~~~~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE------LKRSLTAKFKSNENVLILGYTKHMNEWM 271 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH------HHHHHHHHhccCCCeEEEeccchHHHHH
Confidence 345688888888762 23344455553 22 24567666654310 11222222 13578888999775 599
Q ss_pred cCCCcceeeecCCchhHHHHHhcCCcEEec-CCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHH
Q 012342 339 KHPSIGGFLTHCGWNSIVESLCSGVPMICW-PFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGK 417 (465)
Q Consensus 339 ~~~~~~~~i~hgG~~s~~eal~~GvP~i~~-P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~ 417 (465)
..+++ +|+..|..|+.||+++|+|+|+. |.-..|..|+..+ ++.|+|+.. + +.+++.++|.++++|++
T Consensus 272 ~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~----~--~~~~l~~~i~~ll~~~~-- 340 (391)
T PRK13608 272 ASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA----D--TPEEAIKIVASLTNGNE-- 340 (391)
T ss_pred HhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe----C--CHHHHHHHHHHHhcCHH--
Confidence 99999 99998889999999999999998 6655667899998 788999776 3 68899999999998764
Q ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Q 012342 418 QMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 453 (465)
Q Consensus 418 ~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 453 (465)
.+ +++++.+++. .+..+.++.++.+++.+..
T Consensus 341 -~~---~~m~~~~~~~-~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 341 -QL---TNMISTMEQD-KIKYATQTICRDLLDLIGH 371 (391)
T ss_pred -HH---HHHHHHHHHh-cCCCCHHHHHHHHHHHhhh
Confidence 22 2233333322 2234455556666555544
No 44
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.88 E-value=8.2e-08 Score=96.37 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=91.5
Q ss_pred CCCceeEEeeccccCCCHHHH-HHHHHHHH-----hCCCCEEEEEcCCCCCCCcCCCchhHHHH-hccCceEeeccChh-
Q 012342 264 EPKSVIYVNFGSFIFMNKQQL-IEVAMGLV-----NSNHPFLWIIRPDLVTGETADLPAEFEVK-AKEKGFVASWCPQE- 335 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~-~~~~~al~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~p~~- 335 (465)
+++++|.+..|+........+ ..+...+. ..+..++++.|.+.. +-+.+.+. ...++.+.+|+++.
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~------~~~~L~~~~~~~~v~~~G~~~~~~ 277 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKK------LQSKLESRDWKIPVKVRGFVTNME 277 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHH------HHHHHHhhcccCCeEEEeccccHH
Confidence 445567666666543333322 22322221 223556666664411 11122211 13467788999874
Q ss_pred hhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChh-hHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcC
Q 012342 336 EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQP-TNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 413 (465)
Q Consensus 336 ~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~-~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~ 413 (465)
.++..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|+.+ -+.+++.++|.+++.+
T Consensus 278 ~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~------~~~~~la~~i~~ll~~ 347 (382)
T PLN02605 278 EWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFS------ESPKEIARIVAEWFGD 347 (382)
T ss_pred HHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeec------CCHHHHHHHHHHHHcC
Confidence 59999999 999999999999999999999999877786 589888 667888755 2689999999999987
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.87 E-value=8.7e-06 Score=83.99 Aligned_cols=140 Identities=12% Similarity=0.099 Sum_probs=87.1
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCcCCCchhHHHHh-ccCceEeeccChhh---hhcCC
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEE---VLKHP 341 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~p~~~---~l~~~ 341 (465)
..+++..|+... .+.+..++++++.. +.+++++ |.+. ..+.+.+.. ..++.+.+|+++.+ ++..+
T Consensus 263 ~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~iv-G~G~-------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 263 KPLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFV-GDGP-------YREELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred CeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEE-eCCh-------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 355666687652 33455567777664 4555544 4321 222333222 24677889998644 88899
Q ss_pred CcceeeecCC----chhHHHHHhcCCcEEecCCCCChhhHHHhhccc---ceeEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 012342 342 SIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNE---WGVGMEINGDDEDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 342 ~~~~~i~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~---~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~ 414 (465)
++ ||.-.. .++++||+++|+|+|+....+ ....+ +. -+.|+.+.. -+.+++.++|.++++|+
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv-~~~~~~~~G~lv~~----~d~~~la~~i~~ll~~~ 401 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDII-PPDQEGKTGFLYTP----GDVDDCVEKLETLLADP 401 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhh-hcCCCCCceEEeCC----CCHHHHHHHHHHHHhCH
Confidence 99 775433 346889999999999876532 22233 43 577877743 46899999999999876
Q ss_pred h-HHHHHHHHHHHH
Q 012342 415 K-GKQMRNKAMEWK 427 (465)
Q Consensus 415 ~-~~~~~~~a~~l~ 427 (465)
+ -+++.+++++..
T Consensus 402 ~~~~~~~~~a~~~~ 415 (465)
T PLN02871 402 ELRERMGAAAREEV 415 (465)
T ss_pred HHHHHHHHHHHHHH
Confidence 5 123455554433
No 46
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.69 E-value=2.4e-05 Score=77.01 Aligned_cols=143 Identities=14% Similarity=0.206 Sum_probs=88.5
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCcCCCchhHHH-----HhccCceEeeccChhh-
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQEE- 336 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~p~~~- 336 (465)
+..+++..|+... ...+.+.+++..+.. .+..+++..++. ..+.+.+ ...+++.+.+++|+.+
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 272 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP--------EREELEELARELGLADRVIFTGFVPREEL 272 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--------hHHHHHHHHHHcCCCCcEEEeccCChHHH
Confidence 3466777788653 334555555555554 345555544322 1122222 2246788899998754
Q ss_pred --hhcCCCcceeeecC----CchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHH
Q 012342 337 --VLKHPSIGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 410 (465)
Q Consensus 337 --~l~~~~~~~~i~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~ 410 (465)
++..+++ +|... ..+++.||+++|+|+|+... ...+..+ +..+.|..+.. . +. ++.++|.++
T Consensus 273 ~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~--~--~~-~~~~~i~~l 340 (374)
T cd03817 273 PDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPP--G--DE-ALAEALLRL 340 (374)
T ss_pred HHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCC--C--CH-HHHHHHHHH
Confidence 7888998 66433 34689999999999998654 3345555 55577877753 2 22 999999999
Q ss_pred hcCCh-HHHHHHHHHHHHH
Q 012342 411 MEGEK-GKQMRNKAMEWKG 428 (465)
Q Consensus 411 l~~~~-~~~~~~~a~~l~~ 428 (465)
+++++ -.++.+++++..+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~ 359 (374)
T cd03817 341 LQDPELRRRLSKNAEESAE 359 (374)
T ss_pred HhChHHHHHHHHHHHHHHH
Confidence 98875 1234444444443
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=5.3e-06 Score=76.20 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=100.3
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHh--ccCceEeeccCh-hhhhcCCCc
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFVASWCPQ-EEVLKHPSI 343 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~p~-~~~l~~~~~ 343 (465)
.-|+|++|... .....-+++..|.+..+.+-++++.... -...+..+. .+|+.+...... ..++..++.
T Consensus 159 r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p------~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~ 230 (318)
T COG3980 159 RDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNP------TLKNLRKRAEKYPNINLYIDTNDMAELMKEADL 230 (318)
T ss_pred heEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCc------chhHHHHHHhhCCCeeeEecchhHHHHHHhcch
Confidence 36999998754 3445667888888888777777774321 223333332 345666555554 459999999
Q ss_pred ceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 344 GGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 344 ~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
.|+-||. |+.|++.-|+|.+++|+...|---|+.. +.+|+-..+.. . ++.+....-+.++++|..
T Consensus 231 --aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~--~-l~~~~~~~~~~~i~~d~~ 295 (318)
T COG3980 231 --AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGY--H-LKDLAKDYEILQIQKDYA 295 (318)
T ss_pred --heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccC--C-CchHHHHHHHHHhhhCHH
Confidence 9998875 8999999999999999999999999999 88899777754 3 778888888888888865
No 48
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.59 E-value=8.5e-05 Score=72.49 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=83.4
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCcCCCchhHHHH--hccCceEeeccCh-hhhhc
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQ-EEVLK 339 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~p~-~~~l~ 339 (465)
++.+++..|+... ...+.+.++++.+.+ .+..++++.+...... ........ ...++.+.++..+ ..++.
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~----~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 262 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENP----AAILEIEKLGLEGRVEFLGFRDDVPELLA 262 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchh----hHHHHHHhcCCcceEEEeeccccHHHHHH
Confidence 4578888888753 344555555555553 3445554443321100 00000111 2356777777554 45888
Q ss_pred CCCcceeeecCC----chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 340 HPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 340 ~~~~~~~i~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
.+++ +|.-.. -+++.||+.+|+|+|+-+... +...+ ++.+.|..+. .-+.+++.++|.+++.+++
T Consensus 263 ~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i-~~~~~g~~~~----~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 263 AADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAV-IDGVNGFLVP----PGDAEALADAIERLIEDPE 331 (359)
T ss_pred hccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhh-hcCcceEEEC----CCCHHHHHHHHHHHHhCHH
Confidence 9988 775433 568999999999999965543 33444 4456777764 3478999999999998775
No 49
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.55 E-value=0.0002 Score=69.94 Aligned_cols=131 Identities=11% Similarity=0.193 Sum_probs=82.9
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHHH-----HhccCceEeeccChh--
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQE-- 335 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~p~~-- 335 (465)
+..+++.+|+... ...+.+.+.+..+... +..+++. |... ....+.. ...+++.+.+++++.
T Consensus 198 ~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~-G~~~-------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 269 (374)
T cd03801 198 DEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIV-GDGP-------LREELEALAAELGLGDRVTFLGFVPDEDL 269 (374)
T ss_pred CCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEE-eCcH-------HHHHHHHHHHHhCCCcceEEEeccChhhH
Confidence 3467777788652 2334444444444433 3344433 3221 1122221 135688889999754
Q ss_pred -hhhcCCCcceeee----cCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHH
Q 012342 336 -EVLKHPSIGGFLT----HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 410 (465)
Q Consensus 336 -~~l~~~~~~~~i~----hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~ 410 (465)
.++..+++ +|. -|.-+++.||+++|+|+|+.+. ..+...+ +..+.|+.+. ..+.+++.++|.++
T Consensus 270 ~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~----~~~~~~l~~~i~~~ 338 (374)
T cd03801 270 PALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVP----PGDPEALAEAILRL 338 (374)
T ss_pred HHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeC----CCCHHHHHHHHHHH
Confidence 47888888 663 2456789999999999999776 3345555 5456777774 34689999999999
Q ss_pred hcCCh
Q 012342 411 MEGEK 415 (465)
Q Consensus 411 l~~~~ 415 (465)
+++++
T Consensus 339 ~~~~~ 343 (374)
T cd03801 339 LDDPE 343 (374)
T ss_pred HcChH
Confidence 98875
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.55 E-value=8.2e-05 Score=72.96 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=83.3
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhh---hhcCC
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEE---VLKHP 341 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~---~l~~~ 341 (465)
+..+++..|+... ...+.+.+++..+...+.+++++-..... . .........+++.+.+|+++.+ ++..+
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~-~-----~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 263 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLEL-E-----EESYELEGDPRVEFLGAYPQEEIDDFYAEI 263 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhh-h-----HHHHhhcCCCeEEEeCCCCHHHHHHHHHhC
Confidence 4467777888753 23444444444444435565554332211 0 0000001246788899997654 68899
Q ss_pred Ccceeee----cCCc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 342 SIGGFLT----HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 342 ~~~~~i~----hgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
++ +|. ..|+ .++.||+++|+|+|+.+.. .+...+ +..+.|..+.. -+.+++.++|.++++++.
T Consensus 264 d~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~~----~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 264 DV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELV-RDGVNGLLFPP----GDAEDLAAALERLIDDPD 331 (359)
T ss_pred CE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHh-cCCCcEEEECC----CCHHHHHHHHHHHHhChH
Confidence 88 663 2333 4789999999999986653 455555 55456777743 468999999999998765
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.53 E-value=5.2e-05 Score=74.98 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=83.2
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCcCCCchhHHH----HhccCceEeeccChhh---
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEV----KAKEKGFVASWCPQEE--- 336 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~p~~~--- 336 (465)
++.+++..|+... ...+.+.+++..+.+. +..++++ |.+. ..+.+.+ ...+++.+.+++++.+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~-------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 290 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDGP-------EKEELKELAKALGLDNVTFLGRVPKEELPE 290 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCcc-------cHHHHHHHHHHcCCCcEEEeCCCChHHHHH
Confidence 4577777888753 3345555555555444 4454443 4321 1122222 1236788889998654
Q ss_pred hhcCCCcceeeecCC---------chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHH
Q 012342 337 VLKHPSIGGFLTHCG---------WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLV 407 (465)
Q Consensus 337 ~l~~~~~~~~i~hgG---------~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai 407 (465)
++..+++ +|.... -+++.||+++|+|+|+.+....+... ...+.|..+. .-+.+++.++|
T Consensus 291 ~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~-----~~~~~g~~~~----~~~~~~l~~~i 359 (394)
T cd03794 291 LLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV-----EEAGAGLVVP----PGDPEALAAAI 359 (394)
T ss_pred HHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh-----ccCCcceEeC----CCCHHHHHHHH
Confidence 7888888 664322 23479999999999998887654432 3336666664 34789999999
Q ss_pred HHHhcCCh
Q 012342 408 REMMEGEK 415 (465)
Q Consensus 408 ~~~l~~~~ 415 (465)
.+++.|++
T Consensus 360 ~~~~~~~~ 367 (394)
T cd03794 360 LELLDDPE 367 (394)
T ss_pred HHHHhChH
Confidence 99998765
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.53 E-value=0.00015 Score=72.04 Aligned_cols=142 Identities=12% Similarity=0.112 Sum_probs=85.4
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHh-CCCCEEEEEcCCCCCCCcCCCchhHHH---H--hccCceEeeccCh-hhh
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVN-SNHPFLWIIRPDLVTGETADLPAEFEV---K--AKEKGFVASWCPQ-EEV 337 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~v~~~~p~-~~~ 337 (465)
+..+++.+|.... ...+.+.+.+..+.. .+.+++++..+. ..+.+.+ + ..+++.+.++.++ ..+
T Consensus 196 ~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 267 (371)
T cd04962 196 GEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGP--------ERSPAERLARELGLQDDVLFLGKQDHVEEL 267 (371)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCc--------CHHHHHHHHHHcCCCceEEEecCcccHHHH
Confidence 3466777787653 233444343333333 345555553322 1122221 1 2356777888776 458
Q ss_pred hcCCCcceeeec----CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcC
Q 012342 338 LKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 413 (465)
Q Consensus 338 l~~~~~~~~i~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~ 413 (465)
+..+++ +|.- |.-.++.||+++|+|+|+... ...+..+ ++-..|..+. .-+.+++.++|.+++++
T Consensus 268 ~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~----~~~~~~l~~~i~~l~~~ 336 (371)
T cd04962 268 LSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVD----VGDVEAMAEYALSLLED 336 (371)
T ss_pred HHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcC----CCCHHHHHHHHHHHHhC
Confidence 889988 6632 334599999999999999644 3445555 5545676664 34789999999999987
Q ss_pred ChH-HHHHHHHHHH
Q 012342 414 EKG-KQMRNKAMEW 426 (465)
Q Consensus 414 ~~~-~~~~~~a~~l 426 (465)
+.. +++++++++.
T Consensus 337 ~~~~~~~~~~~~~~ 350 (371)
T cd04962 337 DELWQEFSRAARNR 350 (371)
T ss_pred HHHHHHHHHHHHHH
Confidence 651 2345555554
No 53
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.52 E-value=0.0003 Score=69.48 Aligned_cols=112 Identities=12% Similarity=0.109 Sum_probs=71.4
Q ss_pred hccCceEeeccC-hh---hhhcCCCcceeeecC----CchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEec
Q 012342 322 AKEKGFVASWCP-QE---EVLKHPSIGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING 393 (465)
Q Consensus 322 ~~~~~~v~~~~p-~~---~~l~~~~~~~~i~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~ 393 (465)
...++...+|++ +. .++..+++ +|.-. ..+++.||+++|+|+|+....+ ....+ ...+.|+.+
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~-~~~~~g~~~-- 312 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIV-DHGVTGYLA-- 312 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCC----Chhhe-eCCCceEEe--
Confidence 355777889998 43 47888888 77743 3579999999999999865432 22233 433566666
Q ss_pred CCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 012342 394 DDEDVIRNEVEKLVREMMEGEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 451 (465)
Q Consensus 394 ~~~~~~~~~l~~ai~~~l~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 451 (465)
...+.+++.++|.+++++++ -.++.++|++..+ +.-+.+...+++++.+
T Consensus 313 --~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~y 362 (365)
T cd03825 313 --KPGDPEDLAEGIEWLLADPDEREELGEAARELAE-------NEFDSRVQAKRYLSLY 362 (365)
T ss_pred --CCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH-------HhcCHHHHHHHHHHHH
Confidence 33578999999999998765 1233444443322 1234445555555444
No 54
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.49 E-value=2.4e-06 Score=85.91 Aligned_cols=160 Identities=17% Similarity=0.149 Sum_probs=98.7
Q ss_pred CceeEEeeccccCCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCcCCCchhHHHHhc------------------
Q 012342 266 KSVIYVNFGSFIFMNKQQLIEVAMGLVN----SNHPFLWIIRPDLVTGETADLPAEFEVKAK------------------ 323 (465)
Q Consensus 266 ~~~V~vs~GS~~~~~~~~~~~~~~al~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------ 323 (465)
+++|.+--||-.......+..++++++. .+..|++.+.++.. .+.+.+.+.
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~-------~~~~~~~l~~~g~~~~~~~~~~~~~~~ 277 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS-------LEKLQAILEDLGWQLEGSSEDQTSLFQ 277 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC-------HHHHHHHHHhcCceecCCccccchhhc
Confidence 4578888888753222333344444443 35678877743321 122221111
Q ss_pred -cCceEeeccCh-hhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccc----eeEEEEecCCCC
Q 012342 324 -EKGFVASWCPQ-EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEW----GVGMEINGDDED 397 (465)
Q Consensus 324 -~~~~v~~~~p~-~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~----g~g~~~~~~~~~ 397 (465)
+++.+..+..+ ..++..+++ +|+..|..| .|++..|+|+|++|.-..|. |+..+ ++. |.++.+. .
T Consensus 278 ~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~----~ 348 (396)
T TIGR03492 278 KGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA----S 348 (396)
T ss_pred cCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEecC----C
Confidence 12445455444 569999999 999999766 99999999999999877776 98766 542 6666664 3
Q ss_pred CCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 012342 398 VIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKL 447 (465)
Q Consensus 398 ~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 447 (465)
.+.+.|.+++.++++|++ ..++.. +..++.+++++.+++.++.+
T Consensus 349 ~~~~~l~~~l~~ll~d~~---~~~~~~---~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 349 KNPEQAAQVVRQLLADPE---LLERCR---RNGQERMGPPGASARIAESI 392 (396)
T ss_pred CCHHHHHHHHHHHHcCHH---HHHHHH---HHHHHhcCCCCHHHHHHHHH
Confidence 456999999999998865 333322 12222333456555444433
No 55
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.44 E-value=0.00018 Score=70.74 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=83.1
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCcCCCchhHH---H--HhccCceEeeccChhh-
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFE---V--KAKEKGFVASWCPQEE- 336 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~v~~~~p~~~- 336 (465)
+..+++..|+... ...+.+.+++..+.+ .+..++++ |..... ...... . ...+++.+.+|+++.+
T Consensus 202 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~-G~~~~~-----~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 275 (375)
T cd03821 202 DKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIA-GPDEGG-----YRAELKQIAAALGLEDRVTFTGMLYGEDK 275 (375)
T ss_pred CCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEE-CCCCcc-----hHHHHHHHHHhcCccceEEEcCCCChHHH
Confidence 3467777888652 233444444444444 23444433 322110 111111 1 1346788899999644
Q ss_pred --hhcCCCcceeeecC---C-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHH
Q 012342 337 --VLKHPSIGGFLTHC---G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 410 (465)
Q Consensus 337 --~l~~~~~~~~i~hg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~ 410 (465)
++..+++ +|.-. | -+++.||+++|+|+|+.+.. .....+ .. +.|..... +.+++.++|.++
T Consensus 276 ~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~-~~-~~~~~~~~-----~~~~~~~~i~~l 342 (375)
T cd03821 276 AAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELI-EY-GCGWVVDD-----DVDALAAALRRA 342 (375)
T ss_pred HHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHh-hc-CceEEeCC-----ChHHHHHHHHHH
Confidence 6888888 55432 2 46899999999999996543 344444 44 77766642 449999999999
Q ss_pred hcCCh-HHHHHHHHHHH
Q 012342 411 MEGEK-GKQMRNKAMEW 426 (465)
Q Consensus 411 l~~~~-~~~~~~~a~~l 426 (465)
+++++ -+.+.++|++.
T Consensus 343 ~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 343 LELPQRLKAMGENGRAL 359 (375)
T ss_pred HhCHHHHHHHHHHHHHH
Confidence 98864 12344444443
No 56
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.41 E-value=0.00017 Score=73.42 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=63.4
Q ss_pred eEeeccCh-hhhhcCCCcceeeec-----CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCH
Q 012342 327 FVASWCPQ-EEVLKHPSIGGFLTH-----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR 400 (465)
Q Consensus 327 ~v~~~~p~-~~~l~~~~~~~~i~h-----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~ 400 (465)
++.+...+ ..++..+++ ++.. +|..+++||+++|+|+|+-|...++......+ .+.|.++... +.
T Consensus 305 ~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~~------d~ 375 (425)
T PRK05749 305 LLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQVE------DA 375 (425)
T ss_pred EEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEEC------CH
Confidence 33343333 357888887 4432 34446999999999999999988888888776 5557766542 58
Q ss_pred HHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 012342 401 NEVEKLVREMMEGEK-GKQMRNKAMEW 426 (465)
Q Consensus 401 ~~l~~ai~~~l~~~~-~~~~~~~a~~l 426 (465)
+++.++|.++++|++ -++|.++|++.
T Consensus 376 ~~La~~l~~ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 376 EDLAKAVTYLLTDPDARQAYGEAGVAF 402 (425)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999998875 12344444444
No 57
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.36 E-value=0.00039 Score=69.67 Aligned_cols=136 Identities=11% Similarity=0.119 Sum_probs=84.1
Q ss_pred ceeEEeeccccC-CCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCcCCCchh---HHH--HhccCceEeeccChhh--
Q 012342 267 SVIYVNFGSFIF-MNKQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAE---FEV--KAKEKGFVASWCPQEE-- 336 (465)
Q Consensus 267 ~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~v~~~~p~~~-- 336 (465)
..+++..|+... ...+.+.+.+..+.. .+..++++.+...... . ..... +.+ ...+++.+.+|+|+.+
T Consensus 220 ~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 297 (398)
T cd03800 220 KPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDIL-A-MDEEELRELARELGVIDRVDFPGRVSREDLP 297 (398)
T ss_pred CcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcch-h-hhhHHHHHHHHhcCCCceEEEeccCCHHHHH
Confidence 467777888753 233444444444433 2455555554332110 0 00011 111 1236788899999765
Q ss_pred -hhcCCCcceeeecC---C-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHh
Q 012342 337 -VLKHPSIGGFLTHC---G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 337 -~l~~~~~~~~i~hg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l 411 (465)
++..+++ ++... | -.++.||+++|+|+|+-.... +...+ ++.+.|+.+.. -+.+++.++|.+++
T Consensus 298 ~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i-~~~~~g~~~~~----~~~~~l~~~i~~l~ 366 (398)
T cd03800 298 ALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIV-VDGVTGLLVDP----RDPEALAAALRRLL 366 (398)
T ss_pred HHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHc-cCCCCeEEeCC----CCHHHHHHHHHHHH
Confidence 6888888 77432 2 358999999999999876543 44455 66678887743 46999999999999
Q ss_pred cCCh
Q 012342 412 EGEK 415 (465)
Q Consensus 412 ~~~~ 415 (465)
++++
T Consensus 367 ~~~~ 370 (398)
T cd03800 367 TDPA 370 (398)
T ss_pred hCHH
Confidence 8764
No 58
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.32 E-value=0.0015 Score=65.86 Aligned_cols=93 Identities=11% Similarity=0.148 Sum_probs=64.0
Q ss_pred cCceEeeccChhh---hhcCCCcceeee---cCCc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCC
Q 012342 324 EKGFVASWCPQEE---VLKHPSIGGFLT---HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 396 (465)
Q Consensus 324 ~~~~v~~~~p~~~---~l~~~~~~~~i~---hgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~ 396 (465)
+++.+.+++|+.+ +|..+++ +|. +.|. .+++||+++|+|+|+... ..+...+ +.-..|+.+.
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i-~~~~~G~lv~---- 349 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVI-TDGENGLLVD---- 349 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhc-ccCCceEEcC----
Confidence 5788899999764 6778888 553 2232 479999999999998643 3444555 4445676663
Q ss_pred CCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 012342 397 DVIRNEVEKLVREMMEGEK-GKQMRNKAMEWK 427 (465)
Q Consensus 397 ~~~~~~l~~ai~~~l~~~~-~~~~~~~a~~l~ 427 (465)
.-+.+++.++|.++++|++ -+++.++|++..
T Consensus 350 ~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 350 FFDPDALAAAVIELLDDPARRARLRRAARRTA 381 (396)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3479999999999998874 123444444443
No 59
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.32 E-value=0.0015 Score=64.21 Aligned_cols=134 Identities=15% Similarity=0.190 Sum_probs=78.6
Q ss_pred ceeEEeeccccC-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchh---HHH--HhccCceEee-ccChh--
Q 012342 267 SVIYVNFGSFIF-MNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAE---FEV--KAKEKGFVAS-WCPQE-- 335 (465)
Q Consensus 267 ~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~v~~-~~p~~-- 335 (465)
..+++.+|+... ...+.+...+..+... +..++++ |........ .... ..+ .+.+++.+.+ |+|+.
T Consensus 185 ~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~-G~~~~~~~~--~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~ 261 (366)
T cd03822 185 RPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVA-GETHPDLER--YRGEAYALAERLGLADRVIFINRYLPDEEL 261 (366)
T ss_pred CeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEe-ccCccchhh--hhhhhHhHHHhcCCCCcEEEecCcCCHHHH
Confidence 466777788753 2344444444455443 3344433 322111000 0000 011 2345777764 58864
Q ss_pred -hhhcCCCcceeeec------CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHH
Q 012342 336 -EVLKHPSIGGFLTH------CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVR 408 (465)
Q Consensus 336 -~~l~~~~~~~~i~h------gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~ 408 (465)
.++..+++ +|.- |-.++++||+++|+|+|+-+... ...+ ...+.|..+. .-+.+++.++|.
T Consensus 262 ~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~----~~d~~~~~~~l~ 329 (366)
T cd03822 262 PELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP----PGDPAALAEAIR 329 (366)
T ss_pred HHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc----CCCHHHHHHHHH
Confidence 48888888 6632 33458889999999999977654 2334 4456677664 346899999999
Q ss_pred HHhcCCh
Q 012342 409 EMMEGEK 415 (465)
Q Consensus 409 ~~l~~~~ 415 (465)
+++++++
T Consensus 330 ~l~~~~~ 336 (366)
T cd03822 330 RLLADPE 336 (366)
T ss_pred HHHcChH
Confidence 9998754
No 60
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.31 E-value=0.00059 Score=69.30 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=82.8
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC--------CCCEEEEEcCCCCCCCcCCCchhHHHHh---c-cCceE-eec
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS--------NHPFLWIIRPDLVTGETADLPAEFEVKA---K-EKGFV-ASW 331 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~v-~~~ 331 (465)
+..++++.|.... ...+.+.+.+..+.+. +..++ .+|.+. ..+.+.+.+ . +++.+ .+|
T Consensus 231 ~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~-ivG~G~-------~~~~l~~~~~~~~l~~~~~~~g~ 302 (415)
T cd03816 231 RPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCI-ITGKGP-------LKEKYLERIKELKLKKVTIRTPW 302 (415)
T ss_pred CceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEE-EEecCc-------cHHHHHHHHHHcCCCcEEEEcCc
Confidence 4466677787652 3344445545544431 23433 334332 122332222 1 34444 468
Q ss_pred cChhh---hhcCCCcceeee-c---CC---chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHH
Q 012342 332 CPQEE---VLKHPSIGGFLT-H---CG---WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRN 401 (465)
Q Consensus 332 ~p~~~---~l~~~~~~~~i~-h---gG---~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~ 401 (465)
+|..+ +|..+++ +|. + -| -+++.||+++|+|+|+.... .....+ ++-+.|+.+ + +.+
T Consensus 303 ~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv-~~~~~G~lv----~--d~~ 369 (415)
T cd03816 303 LSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELV-KHGENGLVF----G--DSE 369 (415)
T ss_pred CCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHh-cCCCCEEEE----C--CHH
Confidence 87644 7889999 663 1 12 34799999999999996543 344455 666778776 3 689
Q ss_pred HHHHHHHHHhcC---Ch-HHHHHHHHHHHH
Q 012342 402 EVEKLVREMMEG---EK-GKQMRNKAMEWK 427 (465)
Q Consensus 402 ~l~~ai~~~l~~---~~-~~~~~~~a~~l~ 427 (465)
++.++|.++++| ++ -+.|+++|++..
T Consensus 370 ~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 370 ELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 999999999988 43 234555555544
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.24 E-value=0.0028 Score=61.40 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=79.7
Q ss_pred ceeEEeeccccC-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHH---HH--hccCceEeeccCh-hhh
Q 012342 267 SVIYVNFGSFIF-MNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFE---VK--AKEKGFVASWCPQ-EEV 337 (465)
Q Consensus 267 ~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~v~~~~p~-~~~ 337 (465)
..+++.+|+... ...+.+.++++.+.+. +.+++++ |... ....+. .. ...++.+.++... ..+
T Consensus 178 ~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~-G~~~-------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 249 (348)
T cd03820 178 SKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIV-GDGP-------EREALEALIKELGLEDRVILLGFTKNIEEY 249 (348)
T ss_pred CcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEE-eCCC-------CHHHHHHHHHHcCCCCeEEEcCCcchHHHH
Confidence 456677787653 2345555555555432 3344444 3221 112221 11 2345666676443 458
Q ss_pred hcCCCcceeeecCC----chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcC
Q 012342 338 LKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 413 (465)
Q Consensus 338 l~~~~~~~~i~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~ 413 (465)
+..+++ +|.-.. -+++.||+++|+|+|+.+....+.. +.+....|..+. .-+.+++.++|.++++|
T Consensus 250 ~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~~~~g~~~~----~~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 250 YAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIEDGVNGLLVP----NGDVEALAEALLRLMED 319 (348)
T ss_pred HHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhccCcceEEeC----CCCHHHHHHHHHHHHcC
Confidence 888888 775542 4689999999999998766554432 213323676673 35689999999999998
Q ss_pred Ch
Q 012342 414 EK 415 (465)
Q Consensus 414 ~~ 415 (465)
++
T Consensus 320 ~~ 321 (348)
T cd03820 320 EE 321 (348)
T ss_pred HH
Confidence 76
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.21 E-value=0.0023 Score=62.60 Aligned_cols=133 Identities=13% Similarity=0.161 Sum_probs=84.0
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHH-----hccCceEeeccChh---h
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK-----AKEKGFVASWCPQE---E 336 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~p~~---~ 336 (465)
+..+++..|+... ...+.+.++++.+...+..+.+.+.+... ....+.+. ..+++.+.+++++. .
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 274 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP------LREALEALAAELGLEDRVTFLGAVPHEEVPA 274 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc------chHHHHHHHHhcCCcceEEEeCCCCHHHHHH
Confidence 3467777888753 23444555555554433334333332211 11122211 24678889999875 4
Q ss_pred hhcCCCcceee----ecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 337 VLKHPSIGGFL----THCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 337 ~l~~~~~~~~i----~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
++..+++ +| +-|.-+++.||+++|+|+|+-+..+ ....+ +..+.|..+ ..-+.+++.++|.++++
T Consensus 275 ~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~-~~~~~g~~~----~~~~~~~l~~~i~~~~~ 343 (377)
T cd03798 275 YYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEII-TDGENGLLV----PPGDPEALAEAILRLLA 343 (377)
T ss_pred HHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHh-cCCcceeEE----CCCCHHHHHHHHHHHhc
Confidence 7888888 55 2245678999999999999866543 34445 555667777 44589999999999998
Q ss_pred CCh
Q 012342 413 GEK 415 (465)
Q Consensus 413 ~~~ 415 (465)
++.
T Consensus 344 ~~~ 346 (377)
T cd03798 344 DPW 346 (377)
T ss_pred CcH
Confidence 875
No 63
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.10 E-value=0.011 Score=57.67 Aligned_cols=132 Identities=11% Similarity=0.148 Sum_probs=77.0
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCcCCCchhHHH---HhccCceEeeccCh-hhhh
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFEV---KAKEKGFVASWCPQ-EEVL 338 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~p~-~~~l 338 (465)
+..+++.+|+... ...+.+.+.+..+.. .+.+++++..... .. ....... .+.+++.+.+...+ ..++
T Consensus 192 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~-~~----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 266 (365)
T cd03807 192 DTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPD-RA----NLELLALKELGLEDKVILLGERSDVPALL 266 (365)
T ss_pred CCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcc-hh----HHHHHHHHhcCCCceEEEccccccHHHHH
Confidence 3467777788753 223444443344333 2445555433221 00 0011111 12345666665544 4588
Q ss_pred cCCCcceeeecCC----chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 012342 339 KHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 339 ~~~~~~~~i~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~ 414 (465)
..+++ +|.... -+++.||+++|+|+|+... ..+...+ ++ .|..+. .-+.+++.++|.++++++
T Consensus 267 ~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~-~~--~g~~~~----~~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 267 NALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELV-GD--TGFLVP----PGDPEALAEAIEALLADP 333 (365)
T ss_pred HhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHh-hc--CCEEeC----CCCHHHHHHHHHHHHhCh
Confidence 89998 776544 3799999999999998543 3445555 44 455553 236899999999999876
Q ss_pred h
Q 012342 415 K 415 (465)
Q Consensus 415 ~ 415 (465)
+
T Consensus 334 ~ 334 (365)
T cd03807 334 A 334 (365)
T ss_pred H
Confidence 4
No 64
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.08 E-value=0.0068 Score=59.76 Aligned_cols=126 Identities=13% Similarity=0.198 Sum_probs=71.3
Q ss_pred eEEeeccccCCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHH--HHhccCceEeeccChhh---hhcCC
Q 012342 269 IYVNFGSFIFMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFE--VKAKEKGFVASWCPQEE---VLKHP 341 (465)
Q Consensus 269 V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~p~~~---~l~~~ 341 (465)
.++..|+... .+.+..+++++... +.+++++-++... . .+...+. ....+++.+.+++++.+ ++..+
T Consensus 195 ~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~~-~---~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 195 YYLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADHN-T---PYGKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred EEEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCCc-c---hHHHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 3456788652 22344455555544 3555544433211 0 0111111 12346788899999864 66667
Q ss_pred CcceeeecCCc-----hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 342 SIGGFLTHCGW-----NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 342 ~~~~~i~hgG~-----~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
++ ++.+.-. +++.||+++|+|+|+..... +...+ +. .|..+.. . +.+.++|.+++++++
T Consensus 269 d~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~--~----~~l~~~i~~l~~~~~ 332 (363)
T cd04955 269 AL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKV--G----DDLASLLEELEADPE 332 (363)
T ss_pred CE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecC--c----hHHHHHHHHHHhCHH
Confidence 77 6554333 47899999999999876542 22223 33 2333322 1 129999999998764
No 65
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.07 E-value=1.6e-05 Score=65.92 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=75.8
Q ss_pred eeEEeeccccCCCH---HHHHHHHHHHHhCCC-CEEEEEcCCCCCCCcCCCchhHHHHh-ccCceE--eeccCh-hhhhc
Q 012342 268 VIYVNFGSFIFMNK---QQLIEVAMGLVNSNH-PFLWIIRPDLVTGETADLPAEFEVKA-KEKGFV--ASWCPQ-EEVLK 339 (465)
Q Consensus 268 ~V~vs~GS~~~~~~---~~~~~~~~al~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v--~~~~p~-~~~l~ 339 (465)
.+||+-||.....- -.-.+.++.|.+.|. +.++.+|.+..- .++...... .+...+ .+|-|- .+...
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-----~~d~~~~~~k~~gl~id~y~f~psl~e~I~ 79 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-----FGDPIDLIRKNGGLTIDGYDFSPSLTEDIR 79 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-----CCCHHHhhcccCCeEEEEEecCccHHHHHh
Confidence 79999999863211 123346778888887 556666655221 222221111 122223 566776 55777
Q ss_pred CCCcceeeecCCchhHHHHHhcCCcEEecCC----CCChhhHHHhhccccee
Q 012342 340 HPSIGGFLTHCGWNSIVESLCSGVPMICWPF----TGDQPTNGRYVCNEWGV 387 (465)
Q Consensus 340 ~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~----~~DQ~~na~~~~~~~g~ 387 (465)
.+++ +|+|+|+||++|.+..|+|.|+++- --.|-.-|..+ ++.|-
T Consensus 80 ~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL-~~egy 128 (170)
T KOG3349|consen 80 SADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQL-AEEGY 128 (170)
T ss_pred hccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHH-HhcCc
Confidence 7888 9999999999999999999999995 55899999999 44454
No 66
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.02 E-value=0.0097 Score=60.04 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=76.7
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCcCCCchhHH---HH--hccCceEeeccChh--
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFE---VK--AKEKGFVASWCPQE-- 335 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~v~~~~p~~-- 335 (465)
+..+++..|.... .+.+.+.+.+..+.+ .+..++++..+. ..+.+. ++ +.+++.+.+|+|+.
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--------~~~~l~~~~~~~~l~~~v~~~G~~~~~~~ 263 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGP--------KRILLEEMREKYNLQDRVELLGAVPHERV 263 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCc--------hHHHHHHHHHHhCCCCeEEEeCCCCHHHH
Confidence 4467777887753 234444454444433 234444443222 112222 22 24567889999864
Q ss_pred -hhhcCCCcceeeec---CCc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHH
Q 012342 336 -EVLKHPSIGGFLTH---CGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 410 (465)
Q Consensus 336 -~~l~~~~~~~~i~h---gG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~ 410 (465)
.++..+++ +|.- -|+ .++.||+++|+|+|+-+..+- ...+ +. |.+ .+. . .+.+++.++|.++
T Consensus 264 ~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i-~~-~~~-~~~---~-~~~~~l~~~l~~~ 330 (398)
T cd03796 264 RDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVL-PP-DMI-LLA---E-PDVESIVRKLEEA 330 (398)
T ss_pred HHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhhe-eC-Cce-eec---C-CCHHHHHHHHHHH
Confidence 48888888 6542 244 399999999999999776532 2333 33 323 222 2 2789999999999
Q ss_pred hcCC
Q 012342 411 MEGE 414 (465)
Q Consensus 411 l~~~ 414 (465)
+++.
T Consensus 331 l~~~ 334 (398)
T cd03796 331 ISIL 334 (398)
T ss_pred HhCh
Confidence 9764
No 67
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.01 E-value=0.0002 Score=70.75 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=86.0
Q ss_pred eeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChh---hhhcCCCcc
Q 012342 268 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQE---EVLKHPSIG 344 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~---~~l~~~~~~ 344 (465)
..++..|++.. .+.+..+++++...+.+++++-.+. ..+.+.+...+|+.+.+++|+. .++..+++
T Consensus 196 ~~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~- 264 (351)
T cd03804 196 DYYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA- 264 (351)
T ss_pred CEEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE-
Confidence 34555677652 3445667777777777776665432 1233444557889999999984 47888998
Q ss_pred eee--ecCCc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 012342 345 GFL--THCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 345 ~~i--~hgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~ 414 (465)
+| +.-|+ .++.||+++|+|+|+....+ ....+ ++-+.|+.+.. -+.+++.++|.++++++
T Consensus 265 -~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~----~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 265 -FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEE----QTVESLAAAVERFEKNE 327 (351)
T ss_pred -EEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCC----CCHHHHHHHHHHHHhCc
Confidence 55 33344 35789999999999976533 33334 55567877743 47889999999999887
No 68
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.93 E-value=0.0046 Score=59.91 Aligned_cols=131 Identities=11% Similarity=0.126 Sum_probs=78.3
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHH---HH--hccCceEeeccCh-hh
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFE---VK--AKEKGFVASWCPQ-EE 336 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~v~~~~p~-~~ 336 (465)
+..+++..|+... ...+.+.++++.+... +..++++ |... ..+.+. ++ ..+++.+.++.++ ..
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~-------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVIL-GDGP-------LREELEALAKELGLADRVHFLGFQSNPYP 259 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEE-cCCc-------cHHHHHHHHHhcCCCccEEEecccCCHHH
Confidence 4477788888752 2334444444454443 4455544 3221 111211 11 2456778888776 46
Q ss_pred hhcCCCcceeeec----CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHH---HHHHHH
Q 012342 337 VLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEV---EKLVRE 409 (465)
Q Consensus 337 ~l~~~~~~~~i~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l---~~ai~~ 409 (465)
++..+++ +|.- |.-+++.||+++|+|+|+.... .....+ ++.+.|+... .-+.+.+ .+++.+
T Consensus 260 ~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~----~~~~~~~~~~~~~i~~ 328 (353)
T cd03811 260 YLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVP----VGDEAALAAAALALLD 328 (353)
T ss_pred HHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEEC----CCCHHHHHHHHHHHHh
Confidence 8889988 6632 3356899999999999986544 445555 6667787774 3467777 555555
Q ss_pred HhcCCh
Q 012342 410 MMEGEK 415 (465)
Q Consensus 410 ~l~~~~ 415 (465)
++.+++
T Consensus 329 ~~~~~~ 334 (353)
T cd03811 329 LLLDPE 334 (353)
T ss_pred ccCChH
Confidence 555554
No 69
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.88 E-value=0.0066 Score=62.18 Aligned_cols=82 Identities=10% Similarity=0.182 Sum_probs=57.7
Q ss_pred ccCceEeeccChhh---hhcCC----CcceeeecC---C-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEE
Q 012342 323 KEKGFVASWCPQEE---VLKHP----SIGGFLTHC---G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEI 391 (465)
Q Consensus 323 ~~~~~v~~~~p~~~---~l~~~----~~~~~i~hg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~ 391 (465)
.+++.+.+++++.+ ++..+ ++ ||... | -.+++||+++|+|+|+....+ +...+ +.-..|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHh-cCCCcEEEe
Confidence 45677778877655 45544 56 77643 3 358999999999999976533 34444 444567777
Q ss_pred ecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 392 NGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 392 ~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
.. -+.+++.++|.++++|+.
T Consensus 389 ~~----~d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 389 DV----LDLEAIASALEDALSDSS 408 (439)
T ss_pred CC----CCHHHHHHHHHHHHhCHH
Confidence 43 478999999999998764
No 70
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.86 E-value=0.022 Score=55.99 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=81.1
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHHH-----HhccCceEeeccCh-hh
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQ-EE 336 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~p~-~~ 336 (465)
+..+++..|+... ...+.+.+.+..+.+. +.+++++-.+. ..+.+.+ ...+++.+.++..+ ..
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 262 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGE--------LEEEIKKKVKELGLEDKVIFLGVRNDVPE 262 (358)
T ss_pred CCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCc--------hHHHHHHHHHhcCCCCcEEEecccCCHHH
Confidence 3467777788753 3345555555555443 44555443222 1112211 22467777887555 45
Q ss_pred hhcCCCcceeeec----CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 337 VLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 337 ~l~~~~~~~~i~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
++..+++ +|.- |--++++||+++|+|+|+-.... ....+ +. +.+.... .-+.+++.++|.++++
T Consensus 263 ~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~----~~~~~~~a~~i~~l~~ 330 (358)
T cd03812 263 LLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSL----DESPEIWAEEILKLKS 330 (358)
T ss_pred HHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeC----CCCHHHHHHHHHHHHh
Confidence 8888888 6643 34578999999999999866543 23344 44 5555553 2357999999999999
Q ss_pred CCh
Q 012342 413 GEK 415 (465)
Q Consensus 413 ~~~ 415 (465)
|++
T Consensus 331 ~~~ 333 (358)
T cd03812 331 EDR 333 (358)
T ss_pred Ccc
Confidence 886
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.82 E-value=0.041 Score=54.02 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=85.3
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHH---H--HhccCceEeeccCh-hh
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFE---V--KAKEKGFVASWCPQ-EE 336 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~v~~~~p~-~~ 336 (465)
+..+++..|.... ...+.+.+++..+.+. +..++++-.+... . .+...+. . ...+++.+.+|.+. ..
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~-~---~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 259 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGR-R---FYYAELLELIKRLGLQDRVTFVGHCSDMPA 259 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCccc-c---hHHHHHHHHHHHcCCcceEEEcCCcccHHH
Confidence 3467777787653 3456666667777664 3444444332211 0 0111111 1 22457888888554 45
Q ss_pred hhcCCCcceeeec--CC-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc-
Q 012342 337 VLKHPSIGGFLTH--CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME- 412 (465)
Q Consensus 337 ~l~~~~~~~~i~h--gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~- 412 (465)
++..+++..+-++ -| .+++.||+++|+|+|+.-..+ +...+ ..-+.|..+. .-+.+++.++|..++.
T Consensus 260 ~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i-~~~~~g~~~~----~~~~~~l~~~i~~~~~~ 330 (355)
T cd03819 260 AYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETV-RPGETGLLVP----PGDAEALAQALDQILSL 330 (355)
T ss_pred HHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHH-hCCCceEEeC----CCCHHHHHHHHHHHHhh
Confidence 8888998332231 23 359999999999999865433 33344 4444677774 3478999999976664
Q ss_pred CCh-HHHHHHHHHHHH
Q 012342 413 GEK-GKQMRNKAMEWK 427 (465)
Q Consensus 413 ~~~-~~~~~~~a~~l~ 427 (465)
+++ -++++++|++..
T Consensus 331 ~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 331 LPEGRAKMFAKARMCV 346 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 433 223444444443
No 72
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.79 E-value=0.00049 Score=67.74 Aligned_cols=142 Identities=13% Similarity=0.150 Sum_probs=87.9
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCcCCCchhHHH-----HhccCceEeeccChh---hh
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVNSN-HPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQE---EV 337 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~p~~---~~ 337 (465)
..+++..|+... .+.+..+++++.+.. ..++++..+. ....+.+ ...+|+.+.+|+|+. .+
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~ 260 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGP--------LEAELEALAAALGLLDRVRFLGRLDDEEKAAL 260 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCCh--------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHH
Confidence 467777788652 234555666666655 5555544322 1122222 224688999999975 47
Q ss_pred hcCCCcceeee---cCCc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcC
Q 012342 338 LKHPSIGGFLT---HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 413 (465)
Q Consensus 338 l~~~~~~~~i~---hgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~ 413 (465)
+..+++.++.+ +-|+ .++.||+++|+|+|+............ .-+.|.... .-+.+++.++|.++++|
T Consensus 261 ~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~----~~~~g~~~~----~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 261 LAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL----HGVTGLVVP----PGDPAALAEAIRRLLED 332 (357)
T ss_pred HHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh----CCCceEEeC----CCCHHHHHHHHHHHHHC
Confidence 88888833333 2343 479999999999999766655543332 135666663 34799999999999988
Q ss_pred Ch-HHHHHHHHHHH
Q 012342 414 EK-GKQMRNKAMEW 426 (465)
Q Consensus 414 ~~-~~~~~~~a~~l 426 (465)
++ -..+++++++.
T Consensus 333 ~~~~~~~~~~~~~~ 346 (357)
T cd03795 333 PELRERLGEAARER 346 (357)
T ss_pred HHHHHHHHHHHHHH
Confidence 75 12344444443
No 73
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=97.79 E-value=0.027 Score=62.41 Aligned_cols=161 Identities=9% Similarity=0.110 Sum_probs=88.8
Q ss_pred hhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCC-----CCEEEEEcCCCCCCCc----CCCchhHH---HH
Q 012342 254 TECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSN-----HPFLWIIRPDLVTGET----ADLPAEFE---VK 321 (465)
Q Consensus 254 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-----~~~l~~~~~~~~~~~~----~~~~~~~~---~~ 321 (465)
.++..|+.. + +.++++..|.... .+.+..+++|+.... ..+.+++|.....++. ...-..+. ++
T Consensus 468 ~~l~r~~~~-p-dkpvIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~ 543 (1050)
T TIGR02468 468 SEIMRFFTN-P-RKPMILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDK 543 (1050)
T ss_pred HHHHhhccc-C-CCcEEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHH
Confidence 356677753 2 2356666677652 233444555554321 2444455543211000 00001111 11
Q ss_pred --hccCceEeeccChhh---hhcCCC--cceeeec---CC-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEE
Q 012342 322 --AKEKGFVASWCPQEE---VLKHPS--IGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME 390 (465)
Q Consensus 322 --~~~~~~v~~~~p~~~---~l~~~~--~~~~i~h---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~ 390 (465)
+.+++.+.+++++.+ ++..++ ..+||.- =| -.+++||+++|+|+|+-...+ ....+ +.-..|+.
T Consensus 544 lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlL 618 (1050)
T TIGR02468 544 YDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLL 618 (1050)
T ss_pred hCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEE
Confidence 235677788888754 555442 1227764 24 348899999999999986543 22223 33345777
Q ss_pred EecCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 012342 391 INGDDEDVIRNEVEKLVREMMEGEK-GKQMRNKAMEWK 427 (465)
Q Consensus 391 ~~~~~~~~~~~~l~~ai~~~l~~~~-~~~~~~~a~~l~ 427 (465)
+. .-+.++|.++|.++++|+. .++|.+++++..
T Consensus 619 Vd----P~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v 652 (1050)
T TIGR02468 619 VD----PHDQQAIADALLKLVADKQLWAECRQNGLKNI 652 (1050)
T ss_pred EC----CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 74 3578999999999998875 234555555443
No 74
>PLN02846 digalactosyldiacylglycerol synthase
Probab=97.79 E-value=0.024 Score=57.89 Aligned_cols=73 Identities=11% Similarity=0.181 Sum_probs=51.8
Q ss_pred EeeccChhhhhcCCCcceeeecC----CchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHH
Q 012342 328 VASWCPQEEVLKHPSIGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEV 403 (465)
Q Consensus 328 v~~~~p~~~~l~~~~~~~~i~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l 403 (465)
+.++.+..+++...++ ||.-. =.++++||+++|+|+|+.-... + ..+ ...+-|... + +.+++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~----~--~~~~~ 353 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY----D--DGKGF 353 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec----C--CHHHH
Confidence 3566666679988888 88763 3568899999999999976443 2 333 333444344 2 58899
Q ss_pred HHHHHHHhcCC
Q 012342 404 EKLVREMMEGE 414 (465)
Q Consensus 404 ~~ai~~~l~~~ 414 (465)
.++|.++|.++
T Consensus 354 a~ai~~~l~~~ 364 (462)
T PLN02846 354 VRATLKALAEE 364 (462)
T ss_pred HHHHHHHHccC
Confidence 99999999854
No 75
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.77 E-value=0.0065 Score=59.77 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=71.7
Q ss_pred CceEeeccChhh-hhcCCCc----ceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCC
Q 012342 325 KGFVASWCPQEE-VLKHPSI----GGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVI 399 (465)
Q Consensus 325 ~~~v~~~~p~~~-~l~~~~~----~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~ 399 (465)
++++.+-+--+. ++.-+++ |-|+.+||+| ..|.+++|+|+|.=|+...|...++++ ++.|.|+.++ +
T Consensus 301 dV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v~----~-- 372 (419)
T COG1519 301 DVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQVE----D-- 372 (419)
T ss_pred cEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHH-HhcCCeEEEC----C--
Confidence 455555444433 3333333 1245689998 889999999999999999999999999 8889999994 3
Q ss_pred HHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHH
Q 012342 400 RNEVEKLVREMMEGEKG-KQMRNKAMEWKGLAE 431 (465)
Q Consensus 400 ~~~l~~ai~~~l~~~~~-~~~~~~a~~l~~~~~ 431 (465)
++.+.+++..+++|+.. ++|.+++.++-+..+
T Consensus 373 ~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 373 ADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 88899999888887642 346666666655544
No 76
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.72 E-value=0.00033 Score=69.58 Aligned_cols=132 Identities=16% Similarity=0.126 Sum_probs=84.6
Q ss_pred CCceeEEeeccccCC-CHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCcCCCchhHHH---Hh---ccCceEeeccChh-
Q 012342 265 PKSVIYVNFGSFIFM-NKQQLIEVAMGLVNSNH-PFLWIIRPDLVTGETADLPAEFEV---KA---KEKGFVASWCPQE- 335 (465)
Q Consensus 265 ~~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~v~~~~p~~- 335 (465)
+++.|++++|..... ..+.+..+++++..... .+.++...... ..+.+.+ .. .+++.+.+..++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~------~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR------TRPRIREAGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC------hHHHHHHHHHhhccCCCCEEEECCcCHHH
Confidence 345788888876543 35667778888776533 24444433211 1122222 22 3567776655443
Q ss_pred --hhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcC
Q 012342 336 --EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 413 (465)
Q Consensus 336 --~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~ 413 (465)
.++..+++ ||+..| |.+.|++.+|+|+|+++.. |. +..+ .+.|++..+. . +.++|.++|.+++++
T Consensus 271 ~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~-~~~g~~~~~~----~-~~~~i~~~i~~ll~~ 337 (363)
T cd03786 271 FLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPET-VESGTNVLVG----T-DPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchh-hheeeEEecC----C-CHHHHHHHHHHHhcC
Confidence 46778998 999999 7788999999999998743 22 3333 3457665552 2 589999999999987
Q ss_pred Ch
Q 012342 414 EK 415 (465)
Q Consensus 414 ~~ 415 (465)
+.
T Consensus 338 ~~ 339 (363)
T cd03786 338 EF 339 (363)
T ss_pred ch
Confidence 64
No 77
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.71 E-value=0.00035 Score=69.68 Aligned_cols=154 Identities=11% Similarity=0.122 Sum_probs=89.4
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCcCCCchhHHHH--hccCceEeeccCh---hh
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVNS-----NHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFVASWCPQ---EE 336 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~p~---~~ 336 (465)
..|+++++-.... .+.+..+++++.+. +.++++....+.. ....+.+. ..+++.+.+.+++ ..
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 270 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV------VREPLHKHLGDSKRVHLIEPLEYLDFLN 270 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH------HHHHHHHHhCCCCCEEEECCCChHHHHH
Confidence 4555554332221 13466667766543 4556655433211 11112222 2357777766654 45
Q ss_pred hhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChH
Q 012342 337 VLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKG 416 (465)
Q Consensus 337 ~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~ 416 (465)
++.++++ +|+..|.. +.||+++|+|+|..+...+++. .+ + .|.++.+. .+.++|.+++.++++|++
T Consensus 271 ~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~~-~-~g~~~lv~-----~d~~~i~~ai~~ll~~~~- 336 (365)
T TIGR00236 271 LAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---TV-E-AGTNKLVG-----TDKENITKAAKRLLTDPD- 336 (365)
T ss_pred HHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH---HH-h-cCceEEeC-----CCHHHHHHHHHHHHhChH-
Confidence 7788888 99977644 7999999999999876565553 22 2 46665553 278999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Q 012342 417 KQMRNKAMEWKGLAEEAAAPHGSSSLNLDKL 447 (465)
Q Consensus 417 ~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~ 447 (465)
.+++..+-. . .+++++++.+.++.+
T Consensus 337 --~~~~~~~~~---~-~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 337 --EYKKMSNAS---N-PYGDGEASERIVEEL 361 (365)
T ss_pred --HHHHhhhcC---C-CCcCchHHHHHHHHH
Confidence 444433222 1 233455555444433
No 78
>PLN02949 transferase, transferring glycosyl groups
Probab=97.66 E-value=0.096 Score=53.90 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=60.1
Q ss_pred ccCceEeeccChhh---hhcCCCcceeee---cCCch-hHHHHHhcCCcEEecCCCCChhhHHHhhccc-ce-eEEEEec
Q 012342 323 KEKGFVASWCPQEE---VLKHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNE-WG-VGMEING 393 (465)
Q Consensus 323 ~~~~~v~~~~p~~~---~l~~~~~~~~i~---hgG~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~-~g-~g~~~~~ 393 (465)
.+++.+.+++|+.+ +|..+++ +|+ +=|+| ++.||+++|+|+|+....+--. ..+.++ -| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 56788899998654 7888887 663 23334 7999999999999976543100 111010 02 23222
Q ss_pred CCCCCCHHHHHHHHHHHhcCC-h-HHHHHHHHHHHHHH
Q 012342 394 DDEDVIRNEVEKLVREMMEGE-K-GKQMRNKAMEWKGL 429 (465)
Q Consensus 394 ~~~~~~~~~l~~ai~~~l~~~-~-~~~~~~~a~~l~~~ 429 (465)
. +.+++.++|.++++++ . -+++.+++++..++
T Consensus 407 --~--~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 407 --T--TVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred --C--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2 7899999999999853 2 22455666655443
No 79
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.60 E-value=0.005 Score=61.75 Aligned_cols=84 Identities=13% Similarity=0.206 Sum_probs=60.6
Q ss_pred hccCceEeeccChh---hhhcCCCcceeeec----CCc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEec
Q 012342 322 AKEKGFVASWCPQE---EVLKHPSIGGFLTH----CGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEING 393 (465)
Q Consensus 322 ~~~~~~v~~~~p~~---~~l~~~~~~~~i~h----gG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~ 393 (465)
...++.+.+++|+. .++..+++ +|.. -|+ .+++||+++|+|+|+....+ +...+ +.-..|..+.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv-~~~~~G~~l~- 326 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFV-LEGITGYHLA- 326 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhc-ccCCceEEEe-
Confidence 45677788999864 46889998 6653 333 57789999999999976532 33344 5445676553
Q ss_pred CCCCCCHHHHHHHHHHHhcCCh
Q 012342 394 DDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 394 ~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
...+.+++.++|.++++|++
T Consensus 327 --~~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 327 --EPMTSDSIISDINRTLADPE 346 (380)
T ss_pred --CCCCHHHHHHHHHHHHcCHH
Confidence 33579999999999998875
No 80
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.60 E-value=0.002 Score=65.21 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=84.5
Q ss_pred ceeEEeeccccC-CCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCcCCCchhHHHH-----hccCceEeeccChhh--
Q 012342 267 SVIYVNFGSFIF-MNKQQLIEVAMGLVNSN--HPFLWIIRPDLVTGETADLPAEFEVK-----AKEKGFVASWCPQEE-- 336 (465)
Q Consensus 267 ~~V~vs~GS~~~-~~~~~~~~~~~al~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~p~~~-- 336 (465)
...+++.|.... ...+.+.+.+..+...+ ..+.|.+-++.. ..+.+.+. ..+++.+.+|+++.+
T Consensus 230 ~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~------~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~ 303 (407)
T cd04946 230 TLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP------LEDTLKELAESKPENISVNFTGELSNSEVY 303 (407)
T ss_pred CEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch------HHHHHHHHHHhcCCCceEEEecCCChHHHH
Confidence 466677787753 23444444444443332 355554332211 11222221 134577799999764
Q ss_pred -hhcCCCcceeeecCC----chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHh
Q 012342 337 -VLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 337 -~l~~~~~~~~i~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l 411 (465)
++...++.+||...- -++++||+++|+|+|+-... .....+ +..+.|..+. ..-+.+++.++|.+++
T Consensus 304 ~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i-~~~~~G~l~~---~~~~~~~la~~I~~ll 375 (407)
T cd04946 304 KLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIV-DNGGNGLLLS---KDPTPNELVSSLSKFI 375 (407)
T ss_pred HHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHh-cCCCcEEEeC---CCCCHHHHHHHHHHHH
Confidence 554433334775543 45899999999999985543 345555 5545787774 3347899999999999
Q ss_pred cCCh-HHHHHHHHHHH
Q 012342 412 EGEK-GKQMRNKAMEW 426 (465)
Q Consensus 412 ~~~~-~~~~~~~a~~l 426 (465)
+|++ -.+++++|++.
T Consensus 376 ~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 376 DNEEEYQTMREKAREK 391 (407)
T ss_pred hCHHHHHHHHHHHHHH
Confidence 8764 12344444443
No 81
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.59 E-value=0.0028 Score=64.16 Aligned_cols=160 Identities=11% Similarity=0.124 Sum_probs=93.7
Q ss_pred ceeEEeeccccC-CCHHHHHHHHHHHHhCCC--CEEEEEcCCCCCCCcCCCchhHHH---H--hccCceEeeccChhh--
Q 012342 267 SVIYVNFGSFIF-MNKQQLIEVAMGLVNSNH--PFLWIIRPDLVTGETADLPAEFEV---K--AKEKGFVASWCPQEE-- 336 (465)
Q Consensus 267 ~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~v~~~~p~~~-- 336 (465)
+..+++.|.... ...+.+.+.+..+.+.+. ++++ +|.+. ..+.+.+ + +.+++.+.+|+|+.+
T Consensus 222 ~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i-vG~G~-------~~~~l~~~~~~~~l~~~V~~~G~~~~~el~ 293 (406)
T PRK15427 222 PLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRI-LGIGP-------WERRLRTLIEQYQLEDVVEMPGFKPSHEVK 293 (406)
T ss_pred CeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEE-EECch-------hHHHHHHHHHHcCCCCeEEEeCCCCHHHHH
Confidence 455666777652 233444444444444333 3343 33321 2222222 1 346788899999854
Q ss_pred -hhcCCCcceeeec---------CCc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHH
Q 012342 337 -VLKHPSIGGFLTH---------CGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEK 405 (465)
Q Consensus 337 -~l~~~~~~~~i~h---------gG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ 405 (465)
++..+++ ||.- =|. ++++||+++|+|+|+....+ ....+ +.-..|+.+. .-+.+++.+
T Consensus 294 ~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~lv~----~~d~~~la~ 362 (406)
T PRK15427 294 AMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGWLVP----ENDAQALAQ 362 (406)
T ss_pred HHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceEEeC----CCCHHHHHH
Confidence 7888898 6642 244 57899999999999975533 33344 5545677774 347999999
Q ss_pred HHHHHhc-CCh-HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 012342 406 LVREMME-GEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEIL 452 (465)
Q Consensus 406 ai~~~l~-~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 452 (465)
+|.++++ |++ -+++.++|++..+. .=+.+....++.+.+.
T Consensus 363 ai~~l~~~d~~~~~~~~~~ar~~v~~-------~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 363 RLAAFSQLDTDELAPVVKRAREKVET-------DFNQQVINRELASLLQ 404 (406)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHh
Confidence 9999998 764 23344444443221 2334555555555443
No 82
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.51 E-value=0.0026 Score=63.05 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=61.9
Q ss_pred ccCceEeeccChhh---hhcCCCcceeeec----------CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEE
Q 012342 323 KEKGFVASWCPQEE---VLKHPSIGGFLTH----------CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGM 389 (465)
Q Consensus 323 ~~~~~v~~~~p~~~---~l~~~~~~~~i~h----------gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~ 389 (465)
.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+... +...+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhhe-ecCCeeE
Confidence 56788889998654 6888888 6532 23568999999999999876643 55555 5567787
Q ss_pred EEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 390 EINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 390 ~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
.+. .-+.+++.++|.++++|++
T Consensus 317 ~~~----~~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 317 LVP----EGDVAALAAALGRLLADPD 338 (367)
T ss_pred EEC----CCCHHHHHHHHHHHHcCHH
Confidence 774 3478999999999998765
No 83
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.50 E-value=0.0025 Score=62.68 Aligned_cols=131 Identities=15% Similarity=0.205 Sum_probs=82.1
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHH---HH--hccCceEeeccChh--
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFE---VK--AKEKGFVASWCPQE-- 335 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~v~~~~p~~-- 335 (465)
++.+++.+|+... ...+.+.+.++.+... +..++++..+.. .+.+. +. .++++.+.+++|+.
T Consensus 178 ~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~--------~~~~~~~~~~~~~~~~v~~~g~~~~~~l 249 (355)
T cd03799 178 EPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPL--------RDELEALIAELGLEDRVTLLGAKSQEEV 249 (355)
T ss_pred CCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCcc--------HHHHHHHHHHcCCCCeEEECCcCChHHH
Confidence 3466777788652 2345555555555543 334444433221 11221 11 34678889999864
Q ss_pred -hhhcCCCcceeeec----------CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHH
Q 012342 336 -EVLKHPSIGGFLTH----------CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVE 404 (465)
Q Consensus 336 -~~l~~~~~~~~i~h----------gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~ 404 (465)
.++..+++ +|.- |.-++++||+++|+|+|+.+... ....+ +....|..+. .-+.+++.
T Consensus 250 ~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~~~~----~~~~~~l~ 318 (355)
T cd03799 250 RELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGLLVP----PGDPEALA 318 (355)
T ss_pred HHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceEEeC----CCCHHHHH
Confidence 47788888 5552 33468999999999999976532 22233 4444777774 34789999
Q ss_pred HHHHHHhcCCh
Q 012342 405 KLVREMMEGEK 415 (465)
Q Consensus 405 ~ai~~~l~~~~ 415 (465)
++|.++++++.
T Consensus 319 ~~i~~~~~~~~ 329 (355)
T cd03799 319 DAIERLLDDPE 329 (355)
T ss_pred HHHHHHHhCHH
Confidence 99999998775
No 84
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0026 Score=52.09 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=71.3
Q ss_pred eEEeeccccCCCHHHHH--HHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCc-eEeecc--C-hhhhhcCCC
Q 012342 269 IYVNFGSFIFMNKQQLI--EVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKG-FVASWC--P-QEEVLKHPS 342 (465)
Q Consensus 269 V~vs~GS~~~~~~~~~~--~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~--p-~~~~l~~~~ 342 (465)
+||+-||....-...+. ++..-.+....++|+..|.... . +-|+ .+.+|. + -+.+...++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~------k--------pvagl~v~~F~~~~kiQsli~dar 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI------K--------PVAGLRVYGFDKEEKIQSLIHDAR 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc------c--------cccccEEEeechHHHHHHHhhcce
Confidence 78999998422112211 1333334445688888886531 1 2133 455543 3 345777777
Q ss_pred cceeeecCCchhHHHHHhcCCcEEecCCCC--------ChhhHHHhhcccceeEEEEe
Q 012342 343 IGGFLTHCGWNSIVESLCSGVPMICWPFTG--------DQPTNGRYVCNEWGVGMEIN 392 (465)
Q Consensus 343 ~~~~i~hgG~~s~~eal~~GvP~i~~P~~~--------DQ~~na~~~~~~~g~g~~~~ 392 (465)
+ +|+|||.||++.++..++|.|++|-.. .|-..|..+ .+.+.-+...
T Consensus 68 I--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kl-ae~~~vv~~s 122 (161)
T COG5017 68 I--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKL-AEINYVVACS 122 (161)
T ss_pred E--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHH-HhcCceEEEc
Confidence 7 999999999999999999999999643 588889988 5566655554
No 85
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.45 E-value=0.0024 Score=55.92 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=84.5
Q ss_pred CCceeEEeeccccC-CCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCcCCCchhHH---H--HhccCceEeeccCh--
Q 012342 265 PKSVIYVNFGSFIF-MNKQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFE---V--KAKEKGFVASWCPQ-- 334 (465)
Q Consensus 265 ~~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~v~~~~p~-- 334 (465)
+++.+++..|+... ...+.+..++.-+.. ...-.++.+|... ....+. + ...+++.+.++.++
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 85 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE-------YKKELKNLIEKLNLKENIIFLGYVPDDE 85 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC-------HHHHHHHHHHHTTCGTTEEEEESHSHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc-------cccccccccccccccccccccccccccc
Confidence 45578888888763 334554444444432 2333444444221 111111 1 23567888999883
Q ss_pred -hhhhcCCCcceeeec----CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHH
Q 012342 335 -EEVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVRE 409 (465)
Q Consensus 335 -~~~l~~~~~~~~i~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ 409 (465)
..++..+++ +|+. +...++.||+.+|+|+|+.- ...+...+ .....|..+. .-+.+++.++|.+
T Consensus 86 l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~-~~~~~g~~~~----~~~~~~l~~~i~~ 154 (172)
T PF00534_consen 86 LDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEII-NDGVNGFLFD----PNDIEELADAIEK 154 (172)
T ss_dssp HHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHS-GTTTSEEEES----TTSHHHHHHHHHH
T ss_pred ccccccccee--ccccccccccccccccccccccceeecc----ccCCceee-ccccceEEeC----CCCHHHHHHHHHH
Confidence 358888888 7766 56679999999999999844 45555665 5666788885 3499999999999
Q ss_pred HhcCCh
Q 012342 410 MMEGEK 415 (465)
Q Consensus 410 ~l~~~~ 415 (465)
++++++
T Consensus 155 ~l~~~~ 160 (172)
T PF00534_consen 155 LLNDPE 160 (172)
T ss_dssp HHHHHH
T ss_pred HHCCHH
Confidence 998764
No 86
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.40 E-value=0.0076 Score=59.89 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=85.3
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHHH-----HhccCceEeeccCh--h--
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQ--E-- 335 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~p~--~-- 335 (465)
+.+++..|.......+.+..+++++... +.+++++ |.+. ..+.+.+ .+++++.+.+|+++ .
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~iv-G~g~-------~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~ 251 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHII-GDGS-------DFEKCKAYSRELGIEQRIIWHGWQSQPWEVV 251 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEE-eCCc-------cHHHHHHHHHHcCCCCeEEEecccCCcHHHH
Confidence 4667777876532334456666666654 3344443 4322 1122222 23467888998754 2
Q ss_pred -hhhcCCCcceeeec----CCchhHHHHHhcCCcEEecC-CCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHH
Q 012342 336 -EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWP-FTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVRE 409 (465)
Q Consensus 336 -~~l~~~~~~~~i~h----gG~~s~~eal~~GvP~i~~P-~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ 409 (465)
..+..+++ +|.. |--.++.||+++|+|+|+.- ..+ ....+ +.-..|..+. .-+.+++.++|.+
T Consensus 252 ~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~----~~d~~~la~~i~~ 320 (359)
T PRK09922 252 QQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYT----PGNIDEFVGKLNK 320 (359)
T ss_pred HHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEEC----CCCHHHHHHHHHH
Confidence 24555677 6643 22569999999999999875 332 22234 5555677774 3489999999999
Q ss_pred HhcCCh---HHHHHHHHHHHH
Q 012342 410 MMEGEK---GKQMRNKAMEWK 427 (465)
Q Consensus 410 ~l~~~~---~~~~~~~a~~l~ 427 (465)
++++++ ...++++++++.
T Consensus 321 l~~~~~~~~~~~~~~~~~~~~ 341 (359)
T PRK09922 321 VISGEVKYQHDAIPNSIERFY 341 (359)
T ss_pred HHhCcccCCHHHHHHHHHHhh
Confidence 999885 223444444443
No 87
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.34 E-value=0.0074 Score=59.38 Aligned_cols=128 Identities=11% Similarity=0.152 Sum_probs=77.6
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHHH-----HhccCceEeeccCh-hh
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFVASWCPQ-EE 336 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~p~-~~ 336 (465)
+..+++..|+... ...+.+.+.+..+... +.+++++..+. ..+.+.+ ...+++.+.++..+ ..
T Consensus 187 ~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 258 (360)
T cd04951 187 DTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGP--------LRATLERLIKALGLSNRVKLLGLRDDIAA 258 (360)
T ss_pred CCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCC--------cHHHHHHHHHhcCCCCcEEEecccccHHH
Confidence 3477788888652 2233444444333332 45666554322 1122222 12356777887765 46
Q ss_pred hhcCCCcceeeecCC----chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 337 VLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 337 ~l~~~~~~~~i~hgG----~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
++..+++ +|.-.. .+++.||+++|+|+|+. |...+...+ ++. |..+. .-+.+++.++|.++++
T Consensus 259 ~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~~--g~~~~----~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 259 YYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GDS--GLIVP----ISDPEALANKIDEILK 325 (360)
T ss_pred HHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cCC--ceEeC----CCCHHHHHHHHHHHHh
Confidence 8888988 665432 56899999999999974 444555555 543 44442 2478999999999985
Q ss_pred CC
Q 012342 413 GE 414 (465)
Q Consensus 413 ~~ 414 (465)
++
T Consensus 326 ~~ 327 (360)
T cd04951 326 MS 327 (360)
T ss_pred CC
Confidence 43
No 88
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.34 E-value=0.012 Score=59.68 Aligned_cols=115 Identities=14% Similarity=0.157 Sum_probs=74.2
Q ss_pred cCceEeeccChhh---hhcCCCcceeeecCCc------hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecC
Q 012342 324 EKGFVASWCPQEE---VLKHPSIGGFLTHCGW------NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGD 394 (465)
Q Consensus 324 ~~~~v~~~~p~~~---~l~~~~~~~~i~hgG~------~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~ 394 (465)
+|+.+.+|+|+.+ ++..+++.++.+.-+. +.+.|++++|+|+|+....+. .....+ + +.|+.+.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~-- 356 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVE-- 356 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeC--
Confidence 4788899998754 7889998555555332 236899999999999875431 112233 3 6777774
Q ss_pred CCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Q 012342 395 DEDVIRNEVEKLVREMMEGEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 454 (465)
Q Consensus 395 ~~~~~~~~l~~ai~~~l~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 454 (465)
.-+.+++.++|.++++|+. -+.+++++++..+. .=+.+..++++++.+.+.
T Consensus 357 --~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 357 --PESVEALVAAIAALARQALLRPKLGTVAREYAER-------TLDKENVLRQFIADIRGL 408 (412)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHHH
Confidence 3478999999999998764 23455555554332 223455666666655543
No 89
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.31 E-value=0.0064 Score=61.38 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=65.0
Q ss_pred ccCceEeeccChh---hhhcCCCcceeee---cCCc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCC
Q 012342 323 KEKGFVASWCPQE---EVLKHPSIGGFLT---HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDD 395 (465)
Q Consensus 323 ~~~~~v~~~~p~~---~~l~~~~~~~~i~---hgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~ 395 (465)
.+++.+.+++++. .+|..+++ +|. +-|+ .++.||+++|+|+|+....+ ....+ ++.+.|+.+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i-~~~~~g~~~~--- 351 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAV-ADGETGLLVD--- 351 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhh-ccCCceEECC---
Confidence 3578889999864 47899998 663 2333 58999999999999966533 33344 5556677663
Q ss_pred CCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 012342 396 EDVIRNEVEKLVREMMEGEK-GKQMRNKAMEW 426 (465)
Q Consensus 396 ~~~~~~~l~~ai~~~l~~~~-~~~~~~~a~~l 426 (465)
.-+.+++.++|.++++++. ..++++++++.
T Consensus 352 -~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 352 -GHDPADWADALARLLDDPRTRIRMGAAAVEH 382 (405)
T ss_pred -CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3478999999999998764 22345555543
No 90
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.29 E-value=0.041 Score=53.71 Aligned_cols=137 Identities=20% Similarity=0.181 Sum_probs=80.8
Q ss_pred hhhhhhhcccCCCCceeEEeeccccC----CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceE
Q 012342 253 ETECLQWLDCKEPKSVIYVNFGSFIF----MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFV 328 (465)
Q Consensus 253 ~~~l~~~l~~~~~~~~V~vs~GS~~~----~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 328 (465)
++++.+-|.. .+++.|++-+-+... .....+.++++.|++.+..+|...+... .+ ...++. ++.+
T Consensus 167 d~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~-------~~-~~~~~~--~~~i 235 (335)
T PF04007_consen 167 DPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED-------QR-ELFEKY--GVII 235 (335)
T ss_pred ChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc-------hh-hHHhcc--Cccc
Confidence 3344444442 245688888777431 2345577899999998887554444321 11 111111 2333
Q ss_pred -eeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHH
Q 012342 329 -ASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLV 407 (465)
Q Consensus 329 -~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai 407 (465)
..-+.-.++|.++++ +|+-|| ....||...|+|.|.+ +-++-...-+.+ .+.|. .. ..-+.+++.+.|
T Consensus 236 ~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L-~~~Gl--l~----~~~~~~ei~~~v 304 (335)
T PF04007_consen 236 PPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYL-IEKGL--LY----HSTDPDEIVEYV 304 (335)
T ss_pred cCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHH-HHCCC--eE----ecCCHHHHHHHH
Confidence 244555689999999 998877 6778999999999975 222222233445 34465 22 334677777766
Q ss_pred HHHh
Q 012342 408 REMM 411 (465)
Q Consensus 408 ~~~l 411 (465)
.+.+
T Consensus 305 ~~~~ 308 (335)
T PF04007_consen 305 RKNL 308 (335)
T ss_pred HHhh
Confidence 5554
No 91
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.22 E-value=0.0022 Score=63.01 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=89.8
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCCcCCCchhHHHHhcc--CceEeeccChhhhhcCCCc
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHP-FLWIIRPDLVTGETADLPAEFEVKAKE--KGFVASWCPQEEVLKHPSI 343 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~p~~~~l~~~~~ 343 (465)
++|.+--||..+--...+-.++++++..... ..+.+..... . +.+.+...+ ...+.+ .-.+++..+++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~------~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl 238 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK------G-KDLKEIYGDISEFEISY--DTHKALLEAEF 238 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc------H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH
Confidence 5888988997643334444344444332221 2222222210 1 222222221 222222 33569999999
Q ss_pred ceeeecCCchhHHHHHhcCCcEEecCCC--CChhhHHHhhcc--cceeEEEE-------------ecCCCCCCHHHHHHH
Q 012342 344 GGFLTHCGWNSIVESLCSGVPMICWPFT--GDQPTNGRYVCN--EWGVGMEI-------------NGDDEDVIRNEVEKL 406 (465)
Q Consensus 344 ~~~i~hgG~~s~~eal~~GvP~i~~P~~--~DQ~~na~~~~~--~~g~g~~~-------------~~~~~~~~~~~l~~a 406 (465)
+|+-.|..|+ |++.+|+|+|+ ++- .-|..||++++. ..|..--+ -. +++|++.|.++
T Consensus 239 --al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ--~~~t~~~la~~ 312 (347)
T PRK14089 239 --AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQ--EFVTVENLLKA 312 (347)
T ss_pred --HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhc--ccCCHHHHHHH
Confidence 9999999999 99999999999 553 468889999831 45554333 22 67899999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 012342 407 VREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDK 446 (465)
Q Consensus 407 i~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 446 (465)
+.+ .... ++++...++.+.+. + +++++..+.
T Consensus 313 i~~-~~~~---~~~~~~~~l~~~l~----~-~a~~~~A~~ 343 (347)
T PRK14089 313 YKE-MDRE---KFFKKSKELREYLK----H-GSAKNVAKI 343 (347)
T ss_pred HHH-HHHH---HHHHHHHHHHHHhc----C-CHHHHHHHH
Confidence 987 2111 25555555555443 3 555554433
No 92
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=97.20 E-value=0.0071 Score=60.63 Aligned_cols=149 Identities=14% Similarity=0.098 Sum_probs=87.0
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCcCCCchhHHH---H---hccCceEeeccC
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS-----NHPFLWIIRPDLVTGETADLPAEFEV---K---AKEKGFVASWCP 333 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~v~~~~p 333 (465)
+..+++..|+... .+.+.+.+++..+... +.+++++-++.....+....-+.+.+ + +.+++.+.+++|
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~ 289 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSIS 289 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 4577778888753 3445555555555432 44555443322110000000011211 1 246788899999
Q ss_pred hh---hhhcCCCcceeeec---CC-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHH
Q 012342 334 QE---EVLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKL 406 (465)
Q Consensus 334 ~~---~~l~~~~~~~~i~h---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~a 406 (465)
+. .++..+++ ++.. -| ..++.||+++|+|+|+.-..+ ....+ ...+.|+.+ .. +.+++.++
T Consensus 290 ~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i-~~~~~g~~~----~~-~~~~~a~~ 357 (392)
T cd03805 290 DSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETV-VDGETGFLC----EP-TPEEFAEA 357 (392)
T ss_pred hHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHh-ccCCceEEe----CC-CHHHHHHH
Confidence 76 47888888 6632 22 357899999999999975433 33344 444567666 32 78999999
Q ss_pred HHHHhcCCh-HHHHHHHHHHH
Q 012342 407 VREMMEGEK-GKQMRNKAMEW 426 (465)
Q Consensus 407 i~~~l~~~~-~~~~~~~a~~l 426 (465)
|.+++++++ .+++.++|++.
T Consensus 358 i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 358 MLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred HHHHHhChHHHHHHHHHHHHH
Confidence 999998874 23455555443
No 93
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.19 E-value=0.0076 Score=59.19 Aligned_cols=129 Identities=10% Similarity=0.170 Sum_probs=77.9
Q ss_pred ceeEEeeccccC-CCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCcCCCchhHH-----HHhccCceEeeccChh---
Q 012342 267 SVIYVNFGSFIF-MNKQQLIEVAMGLVNSN--HPFLWIIRPDLVTGETADLPAEFE-----VKAKEKGFVASWCPQE--- 335 (465)
Q Consensus 267 ~~V~vs~GS~~~-~~~~~~~~~~~al~~~~--~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~p~~--- 335 (465)
..+++..|+... ...+.+.+++..+...+ ..++++-..... ..... ....+++.+.+++|+.
T Consensus 195 ~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~-------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 267 (365)
T cd03809 195 RPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL-------NEELLARLRELGLGDRVRFLGYVSDEELA 267 (365)
T ss_pred CCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc-------cHHHHHHHHHcCCCCeEEECCCCChhHHH
Confidence 356667788753 23455555555554443 455544332211 11111 1245678889999875
Q ss_pred hhhcCCCcceeeec----CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHh
Q 012342 336 EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 336 ~~l~~~~~~~~i~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l 411 (465)
.++..+++ +|.- +..+++.||+++|+|+|+....+ ....+ .+ .|..+. .-+.+++.++|.+++
T Consensus 268 ~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~~--~~~~~~----~~~~~~~~~~i~~l~ 334 (365)
T cd03809 268 ALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-GD--AALYFD----PLDPEALAAAIERLL 334 (365)
T ss_pred HHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-cC--ceeeeC----CCCHHHHHHHHHHHh
Confidence 47888888 5532 23458999999999999855422 22222 33 244443 237899999999999
Q ss_pred cCCh
Q 012342 412 EGEK 415 (465)
Q Consensus 412 ~~~~ 415 (465)
+|++
T Consensus 335 ~~~~ 338 (365)
T cd03809 335 EDPA 338 (365)
T ss_pred cCHH
Confidence 8876
No 94
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.18 E-value=0.011 Score=59.22 Aligned_cols=144 Identities=11% Similarity=0.098 Sum_probs=81.4
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHHHH---hc---cCceE-eeccChh--
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEVK---AK---EKGFV-ASWCPQE-- 335 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~v-~~~~p~~-- 335 (465)
.++++..|.... .+.+..+++++... +..++++.++..... +.+.+.+. .. +++.. .+++++.
T Consensus 201 ~~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 201 RPYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPE----VAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred ceEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHH----HHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 356667787652 23344555555543 456665554432100 11112111 11 22443 4677754
Q ss_pred -hhhcCCCcceeeec----CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCC----HHHHHHH
Q 012342 336 -EVLKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVI----RNEVEKL 406 (465)
Q Consensus 336 -~~l~~~~~~~~i~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~----~~~l~~a 406 (465)
.++..+++ +|.- +...+++||+++|+|+|+.... .+...+ +.-+.|..+.. ++.+ .+++.++
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i-~~~~~G~~~~~--~~~~~~~~~~~l~~~ 345 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVV-VDGETGFLVPP--DNSDADGFQAELAKA 345 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHh-hCCCceEEcCC--CCCcccchHHHHHHH
Confidence 47889998 7642 2235779999999999996543 344445 55566777754 3222 2899999
Q ss_pred HHHHhcCCh-HHHHHHHHHH
Q 012342 407 VREMMEGEK-GKQMRNKAME 425 (465)
Q Consensus 407 i~~~l~~~~-~~~~~~~a~~ 425 (465)
|.++++|++ -+++.++|++
T Consensus 346 i~~l~~~~~~~~~~~~~a~~ 365 (388)
T TIGR02149 346 INILLADPELAKKMGIAGRK 365 (388)
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 999998765 1234444444
No 95
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.14 E-value=0.0023 Score=53.64 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=67.8
Q ss_pred eeEEeeccccC-CCHHHHHH-HHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccCh-hhhhcCCCcc
Q 012342 268 VIYVNFGSFIF-MNKQQLIE-VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQ-EEVLKHPSIG 344 (465)
Q Consensus 268 ~V~vs~GS~~~-~~~~~~~~-~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~l~~~~~~ 344 (465)
+.++++|+... ...+.+.+ +++.+.+....+-+.+-+.. ++.+.+...+++.+.+|++. ..++..+++.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~--------~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~ 74 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG--------PDELKRLRRPNVRFHGFVEELPEILAAADVG 74 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES--------S-HHCCHHHCTEEEE-S-HHHHHHHHC-SEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC--------HHHHHHhcCCCEEEcCCHHHHHHHHHhCCEE
Confidence 44556666542 34454444 66666543333433332221 12222112568999999875 4589999996
Q ss_pred eeeec--CC-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcC
Q 012342 345 GFLTH--CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 413 (465)
Q Consensus 345 ~~i~h--gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~ 413 (465)
+..+. .| -+++.|++++|+|+|+.+. .....+ +..+.|..+. + +.+++.++|.++++|
T Consensus 75 l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~~---~--~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 75 LIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLVA---N--DPEELAEAIERLLND 135 (135)
T ss_dssp EE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-T---T---HHHHHHHHHHHHH-
T ss_pred EEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEEC---C--CHHHHHHHHHHHhcC
Confidence 65543 23 4899999999999999776 122233 4467776663 2 899999999999865
No 96
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.13 E-value=0.0053 Score=62.15 Aligned_cols=143 Identities=18% Similarity=0.249 Sum_probs=74.1
Q ss_pred CCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHH-H-hccCceEeeccChhh---hh
Q 012342 264 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEV-K-AKEKGFVASWCPQEE---VL 338 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~v~~~~p~~~---~l 338 (465)
+++.++|.||.+....+++.+.--.+-|++.+...+|......... ..+...+.+ . .++++.+.++.|+.+ .+
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~--~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~ 359 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGE--ARLRRRFAAHGVDPDRIIFSPVAPREEHLRRY 359 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHH--HHHHHHHHHTTS-GGGEEEEE---HHHHHHHG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHH--HHHHHHHHHcCCChhhEEEcCCCCHHHHHHHh
Confidence 4456999999999888899888888889998999999887542110 001111111 0 135677777777544 45
Q ss_pred cCCCcceee---ecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 339 KHPSIGGFL---THCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 339 ~~~~~~~~i---~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
...|+ ++ ..+|.+|++|||+.|||+|.+|--.=.-..+..+-..+|+.-.+.. +.++-.+.--++-+|.+
T Consensus 360 ~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~-----s~~eYv~~Av~La~D~~ 432 (468)
T PF13844_consen 360 QLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD-----SEEEYVEIAVRLATDPE 432 (468)
T ss_dssp GG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S-----SHHHHHHHHHHHHH-HH
T ss_pred hhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC-----CHHHHHHHHHHHhCCHH
Confidence 56776 54 4578999999999999999999643222233222255666432321 34444333334545554
No 97
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.11 E-value=0.017 Score=58.30 Aligned_cols=91 Identities=10% Similarity=0.144 Sum_probs=62.8
Q ss_pred ccCceEeeccChh-hhhcCCCcceee--ec--CCch-hHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCC
Q 012342 323 KEKGFVASWCPQE-EVLKHPSIGGFL--TH--CGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 396 (465)
Q Consensus 323 ~~~~~v~~~~p~~-~~l~~~~~~~~i--~h--gG~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~ 396 (465)
.+++.+.+++++. .++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+. +.+.-|.|+.+ .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~------i~~~~~~g~lv----~ 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG------IDALPGAELLV----A 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc------ccccCCcceEe----C
Confidence 3578889999874 58889998 65 32 3543 699999999999998764321 11233566666 3
Q ss_pred CCCHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 012342 397 DVIRNEVEKLVREMMEGEK-GKQMRNKAMEW 426 (465)
Q Consensus 397 ~~~~~~l~~ai~~~l~~~~-~~~~~~~a~~l 426 (465)
-+.+++.++|.++++|++ -+.+.+++++.
T Consensus 347 -~~~~~la~ai~~ll~~~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 347 -ADPADFAAAILALLANPAEREELGQAARRR 376 (397)
T ss_pred -CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 378999999999998865 12344444443
No 98
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.10 E-value=0.021 Score=56.89 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=78.6
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC------CCCEEEEEcCCCCCCCcCCCchhHHHH-----hccCceEeeccC
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS------NHPFLWIIRPDLVTGETADLPAEFEVK-----AKEKGFVASWCP 333 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~p 333 (465)
+..++++.|.... ...+.+...+..+.+. +..++++-. +. ..+.+.+. +.+++.+.++..
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~-g~-------~~~~~~~~~~~~~~~~~v~~~g~~~ 264 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGD-GP-------ARGACEQMVRAAGLAHLVWLPGERD 264 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecC-Cc-------hHHHHHHHHHHcCCcceEEEcCCcC
Confidence 4578888888763 2334333333333221 334444432 21 11223222 234455566554
Q ss_pred h-hhhhcCCCcceeee--c--CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHH
Q 012342 334 Q-EEVLKHPSIGGFLT--H--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVR 408 (465)
Q Consensus 334 ~-~~~l~~~~~~~~i~--h--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~ 408 (465)
+ ..++..+++ +|. + |--++++||+++|+|+|+-...+ +...+ +.-..|..+. .-+.+++.++|.
T Consensus 265 ~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i-~~~~~g~~~~----~~d~~~la~~i~ 333 (374)
T TIGR03088 265 DVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELV-QHGVTGALVP----PGDAVALARALQ 333 (374)
T ss_pred CHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHh-cCCCceEEeC----CCCHHHHHHHHH
Confidence 4 468999998 663 2 33568999999999999976533 34444 4445676664 347899999999
Q ss_pred HHhcCCh
Q 012342 409 EMMEGEK 415 (465)
Q Consensus 409 ~~l~~~~ 415 (465)
++++++.
T Consensus 334 ~l~~~~~ 340 (374)
T TIGR03088 334 PYVSDPA 340 (374)
T ss_pred HHHhCHH
Confidence 9998764
No 99
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.02 E-value=0.45 Score=48.40 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=55.7
Q ss_pred ccCceEeeccChhh---hhcCCCcceeee-----cCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcc---cceeEEEE
Q 012342 323 KEKGFVASWCPQEE---VLKHPSIGGFLT-----HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCN---EWGVGMEI 391 (465)
Q Consensus 323 ~~~~~v~~~~p~~~---~l~~~~~~~~i~-----hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~---~~g~g~~~ 391 (465)
.+++.+.+++|+.+ +|..+++ +|+ |-| .++.||+++|+|.|+.-..+.- ..+++ .-..|+..
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp~----~~iv~~~~~g~~G~l~ 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGPL----LDIVVPWDGGPTGFLA 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcc-cHHHHHHHcCCcEEEEcCCCCc----hheeeccCCCCceEEe
Confidence 46788899998754 7888888 654 223 3789999999999986543321 11212 33466554
Q ss_pred ecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 392 NGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 392 ~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
. +.+++.++|.++++++.
T Consensus 377 ----~--d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLSE 394 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCCH
Confidence 3 78999999999998654
No 100
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.00 E-value=0.01 Score=59.06 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=68.3
Q ss_pred ccCceEeeccChh-hhhcCCCcceeeec--CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCC
Q 012342 323 KEKGFVASWCPQE-EVLKHPSIGGFLTH--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVI 399 (465)
Q Consensus 323 ~~~~~v~~~~p~~-~~l~~~~~~~~i~h--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~ 399 (465)
.+++.+.++.++. .++..+++-++.++ |...+++||+++|+|+|+...... ....+ +.-..|..+ +.-+
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g---~~~~v-~~~~~G~lv----~~~d 331 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYG---PSEII-EDGENGYLV----PKGD 331 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCC---cHHHc-ccCCCceEe----CCCc
Confidence 4567777777664 58889988444444 234589999999999999654321 23334 444667777 3457
Q ss_pred HHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHH
Q 012342 400 RNEVEKLVREMMEGEK-GKQMRNKAMEWKGLAE 431 (465)
Q Consensus 400 ~~~l~~ai~~~l~~~~-~~~~~~~a~~l~~~~~ 431 (465)
.+++.++|.+++++++ ..++.++|++.++.+.
T Consensus 332 ~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 332 IEALAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998874 2346666666554443
No 101
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.78 E-value=0.44 Score=50.64 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=52.2
Q ss_pred ceEeeccChh-hhhcCCCcceeeec---CC-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCH
Q 012342 326 GFVASWCPQE-EVLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR 400 (465)
Q Consensus 326 ~~v~~~~p~~-~~l~~~~~~~~i~h---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~ 400 (465)
+.+.++.++. .++...++ ||.- =| .++++||+++|+|+|+.-..... . + ...+.|. +. -+.
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V-~~g~nGl-l~-----~D~ 668 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-F-RSFPNCL-TY-----KTS 668 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-E-eecCCeE-ec-----CCH
Confidence 4456666665 48989998 7763 23 45889999999999998765422 1 3 3222332 22 268
Q ss_pred HHHHHHHHHHhcCCh
Q 012342 401 NEVEKLVREMMEGEK 415 (465)
Q Consensus 401 ~~l~~ai~~~l~~~~ 415 (465)
+++.++|.++|.++.
T Consensus 669 EafAeAI~~LLsd~~ 683 (794)
T PLN02501 669 EDFVAKVKEALANEP 683 (794)
T ss_pred HHHHHHHHHHHhCch
Confidence 999999999998774
No 102
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.67 E-value=0.05 Score=56.56 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=66.9
Q ss_pred ccCceEeeccChhhhhcCCCcceeee---cCC-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCC
Q 012342 323 KEKGFVASWCPQEEVLKHPSIGGFLT---HCG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 398 (465)
Q Consensus 323 ~~~~~v~~~~p~~~~l~~~~~~~~i~---hgG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~ 398 (465)
.+++...++.+...++..+++ ||. .=| ..+++||+++|+|+|+.-.... +...+ +.-..|..+....+.-
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G---~~eiI-~~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG---NPTFI-EDNKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCCC---CHHHc-cCCCCEEEEeCCcccc
Confidence 355777888887889999998 765 234 3589999999999999765311 22333 4334465554200011
Q ss_pred C----HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 012342 399 I----RNEVEKLVREMMEGEKGKQMRNKAMEWKGLAE 431 (465)
Q Consensus 399 ~----~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~ 431 (465)
+ .++++++|.++++++.-..|.++|.+.++.+.
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcC
Confidence 2 78899999999954433456777776655544
No 103
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.64 E-value=0.012 Score=57.80 Aligned_cols=110 Identities=16% Similarity=0.311 Sum_probs=76.1
Q ss_pred ccCceEeeccChhhh---hcCCCcceeeecC-------Cc------hhHHHHHhcCCcEEecCCCCChhhHHHhhcccce
Q 012342 323 KEKGFVASWCPQEEV---LKHPSIGGFLTHC-------GW------NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWG 386 (465)
Q Consensus 323 ~~~~~v~~~~p~~~~---l~~~~~~~~i~hg-------G~------~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g 386 (465)
.+|+...+|+|+.++ |.. +.+++...- .+ +-+.+.+++|+|+|+++ +...+..+ ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHH-HhCC
Confidence 568999999998764 444 444433221 11 12677899999999964 45667777 7889
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012342 387 VGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVN 449 (465)
Q Consensus 387 ~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 449 (465)
+|+.+ + +.+++.+++.++. ++.-.+|++||++++++++. |.--..++.+++.
T Consensus 280 ~G~~v----~--~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVV----D--SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred ceEEe----C--CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 99998 4 4678999998753 33334699999999999994 4555555555443
No 104
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.61 E-value=0.1 Score=54.05 Aligned_cols=135 Identities=10% Similarity=0.163 Sum_probs=79.4
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCcCCCchhHH---HH--hccCceEeeccChhhh
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFE---VK--AKEKGFVASWCPQEEV 337 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~l~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~v~~~~p~~~~ 337 (465)
+..+++..|.... .+.+.+.+.+..+.+. +.++ +.+|...... ...+.+. ++ +.+++.+.+...-..+
T Consensus 292 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l-~IvG~g~~~~---~~~~e~~~li~~l~l~~~V~f~G~~~v~~~ 367 (475)
T cd03813 292 EPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEG-WVIGPTDEDP---EYAEECRELVESLGLEDNVKFTGFQNVKEY 367 (475)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEE-EEECCCCcCh---HHHHHHHHHHHHhCCCCeEEEcCCccHHHH
Confidence 3466777788763 2334444444444332 3343 4444331100 0111221 11 2467777775555678
Q ss_pred hcCCCcceeeec----CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccc------eeEEEEecCCCCCCHHHHHHHH
Q 012342 338 LKHPSIGGFLTH----CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEW------GVGMEINGDDEDVIRNEVEKLV 407 (465)
Q Consensus 338 l~~~~~~~~i~h----gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~------g~g~~~~~~~~~~~~~~l~~ai 407 (465)
+..+++ +|.- |--++++||+++|+|+|+-.. ......+ +.. ..|..+. .-+.+++.++|
T Consensus 368 l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv-~~~~~~~~g~~G~lv~----~~d~~~la~ai 436 (475)
T cd03813 368 LPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELI-EGADDEALGPAGEVVP----PADPEALARAI 436 (475)
T ss_pred HHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHh-cCCcccccCCceEEEC----CCCHHHHHHHH
Confidence 888888 6543 334689999999999999533 3334444 431 2677774 35799999999
Q ss_pred HHHhcCCh
Q 012342 408 REMMEGEK 415 (465)
Q Consensus 408 ~~~l~~~~ 415 (465)
.++++|++
T Consensus 437 ~~ll~~~~ 444 (475)
T cd03813 437 LRLLKDPE 444 (475)
T ss_pred HHHhcCHH
Confidence 99998875
No 105
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.60 E-value=0.063 Score=53.63 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=71.7
Q ss_pred eeEEeeccccC-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhh---hhcCCCc
Q 012342 268 VIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEE---VLKHPSI 343 (465)
Q Consensus 268 ~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~---~l~~~~~ 343 (465)
++++.+|++.. ...+.+.++++. ..+..|+++-..+... + ...+ ...+|+.+.+++|+.+ ++.++++
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~~--~p~~~~vliG~~~~~~-~----~~~~--~~~~nV~~~G~~~~~~l~~~l~~~Dv 276 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAKA--RPDWSFVLIGPVDVSI-D----PSAL--LRLPNVHYLGPKPYKELPAYLAGFDV 276 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHHH--CCCCEEEEECCCcCcc-C----hhHh--ccCCCEEEeCCCCHHHHHHHHHhCCE
Confidence 56666788763 333444444332 2355555543321110 0 0111 1136899999998754 7888998
Q ss_pred ceee------ecCCc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 012342 344 GGFL------THCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 344 ~~~i------~hgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~ 414 (465)
..+- +.++. +.+.|++++|+|+|..++ + ..+ +..+ +..+. . -+.+++.++|.+++.++
T Consensus 277 ~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~----~---~~~-~~~~-~~~~~---~-~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 277 AILPFRLNELTRATSPLKLFEYLAAGKPVVATPL----P---EVR-RYED-EVVLI---A-DDPEEFVAAIEKALLED 341 (373)
T ss_pred EecCCccchhhhcCCcchHHHHhccCCCEEecCc----H---HHH-hhcC-cEEEe---C-CCHHHHHHHHHHHHhcC
Confidence 3322 22232 458999999999998763 1 222 3223 23332 2 27999999999987654
No 106
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.56 E-value=0.012 Score=58.12 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=76.2
Q ss_pred CCCceeEEeeccccCCC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCCCCcCCCchhHHHHhc--cCceEeeccC---
Q 012342 264 EPKSVIYVNFGSFIFMN-K---QQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAK--EKGFVASWCP--- 333 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~p--- 333 (465)
.+++.|+|++=...+.. . ..+.+++++|.+. +.++||....... ....+.+.+. +|+.+..-++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~------~~~~i~~~l~~~~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR------GSDIIIEKLKKYDNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH------HHHHHHHHHTT-TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch------HHHHHHHHhcccCCEEEECCCCHHH
Confidence 45679999986655544 3 4566667777665 7788888774311 0111222221 4788765554
Q ss_pred hhhhhcCCCcceeeecCCchhHH-HHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 334 QEEVLKHPSIGGFLTHCGWNSIV-ESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 334 ~~~~l~~~~~~~~i~hgG~~s~~-eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
...+|.++++ +||..| ++. ||.+.|+|.|.+=...+.+.- + + .|..+-+ + .+.++|.++++++++
T Consensus 252 ~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe~---r-~-~~~nvlv----~-~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQEG---R-E-RGSNVLV----G-TDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HHH---H-H-TTSEEEE----T-SSHHHHHHHHHHHHH
T ss_pred HHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHHH---H-h-hcceEEe----C-CCHHHHHHHHHHHHh
Confidence 4568899999 999999 566 999999999999332332222 1 1 2333334 3 589999999999997
Q ss_pred C
Q 012342 413 G 413 (465)
Q Consensus 413 ~ 413 (465)
+
T Consensus 318 ~ 318 (346)
T PF02350_consen 318 D 318 (346)
T ss_dssp -
T ss_pred C
Confidence 6
No 107
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.54 E-value=0.077 Score=52.88 Aligned_cols=137 Identities=12% Similarity=0.105 Sum_probs=76.3
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCcCCCchhHHH--HhccCceEeecc--Chh---
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFEV--KAKEKGFVASWC--PQE--- 335 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~--p~~--- 335 (465)
+..+++..|.+.. .+.+.+.+.+..+.+ .+.+++++-++.....+....-....+ ...+++.+.++. ++.
T Consensus 189 ~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 268 (372)
T cd03792 189 ERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVN 268 (372)
T ss_pred CCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHH
Confidence 3466777788753 234444444444433 244555544332110000000111111 123567777776 432
Q ss_pred hhhcCCCcceeeecC---C-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHh
Q 012342 336 EVLKHPSIGGFLTHC---G-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 336 ~~l~~~~~~~~i~hg---G-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l 411 (465)
.++..+++ |+.-. | ..++.||+++|+|+|+..... ....+ +.-..|+.+. +.+++..+|.+++
T Consensus 269 ~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~------~~~~~a~~i~~ll 335 (372)
T cd03792 269 ALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVD------TVEEAAVRILYLL 335 (372)
T ss_pred HHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeC------CcHHHHHHHHHHH
Confidence 47888888 77543 2 348999999999999976432 22334 4445566552 3567788999999
Q ss_pred cCCh
Q 012342 412 EGEK 415 (465)
Q Consensus 412 ~~~~ 415 (465)
.+++
T Consensus 336 ~~~~ 339 (372)
T cd03792 336 RDPE 339 (372)
T ss_pred cCHH
Confidence 8764
No 108
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=96.47 E-value=0.073 Score=51.72 Aligned_cols=128 Identities=10% Similarity=-0.018 Sum_probs=78.5
Q ss_pred eeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHH-H--hccCceEeeccChh---hhhcCC
Q 012342 268 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEV-K--AKEKGFVASWCPQE---EVLKHP 341 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~v~~~~p~~---~~l~~~ 341 (465)
.+.+..|... ..+....++++++..+.+++++..+... . ....... . +.+++.+.+++++. .++..+
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~-~----~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP-D----YFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH-H----HHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 4455567764 2333455777777788787765543211 0 0011111 1 25788889999875 468888
Q ss_pred Ccceeee--cCCc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcC
Q 012342 342 SIGGFLT--HCGW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEG 413 (465)
Q Consensus 342 ~~~~~i~--hgG~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~ 413 (465)
++-++-+ +-|+ .++.||+++|+|+|+.... .+...+ +....|+.+. . .+++.++|.+++..
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~----~--~~~l~~~l~~l~~~ 308 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVD----S--VEELAAAVARADRL 308 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeC----C--HHHHHHHHHHHhcc
Confidence 8822222 2343 4799999999999987653 233344 4433566663 2 89999999988654
No 109
>PRK14098 glycogen synthase; Provisional
Probab=96.40 E-value=0.13 Score=53.51 Aligned_cols=135 Identities=13% Similarity=0.040 Sum_probs=78.8
Q ss_pred ceeEEeeccccC-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChh---hhhcCCC
Q 012342 267 SVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQE---EVLKHPS 342 (465)
Q Consensus 267 ~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~---~~l~~~~ 342 (465)
.++++..|.... ...+.+.+.+..+.+.+.+++++-.+... ....+ ..+.++.++++.+.++++.. .+++.++
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~--~~~~l-~~l~~~~~~~V~~~g~~~~~~~~~~~a~aD 383 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKE--YEKRF-QDFAEEHPEQVSVQTEFTDAFFHLAIAGLD 383 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHH--HHHHH-HHHHHHCCCCEEEEEecCHHHHHHHHHhCC
Confidence 456667777653 34455555555554456666555432210 00001 12223445678888888764 5888999
Q ss_pred cceeeecC---Cc-hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHh
Q 012342 343 IGGFLTHC---GW-NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 343 ~~~~i~hg---G~-~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l 411 (465)
+ |+.-. |. .+.+||+++|+|.|+....+-........ +.-+.|+.+. .-+.+++.++|.+++
T Consensus 384 i--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~~----~~d~~~la~ai~~~l 449 (489)
T PRK14098 384 M--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIFH----DYTPEALVAKLGEAL 449 (489)
T ss_pred E--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEeC----CCCHHHHHHHHHHHH
Confidence 8 77532 22 37789999999988876533211111111 2236777774 457899999999876
No 110
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=96.36 E-value=0.072 Score=55.10 Aligned_cols=130 Identities=9% Similarity=0.022 Sum_probs=78.3
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhH---HHHhccCceEeeccChh---hhh
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF---EVKAKEKGFVASWCPQE---EVL 338 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~p~~---~~l 338 (465)
+.++++..|.... ...+.+.+.+..+.+.+.+++++-.+... +.+.+ ..+.+.++.+....+.. .++
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~------~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPE------LEEALRELAERYPGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHH------HHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Confidence 3467777788763 33455555555555556666655433210 11122 22334566665555553 478
Q ss_pred cCCCcceeeec---CCch-hHHHHHhcCCcEEecCCCCChhhHHHhhcccc------eeEEEEecCCCCCCHHHHHHHHH
Q 012342 339 KHPSIGGFLTH---CGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEW------GVGMEINGDDEDVIRNEVEKLVR 408 (465)
Q Consensus 339 ~~~~~~~~i~h---gG~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~------g~g~~~~~~~~~~~~~~l~~ai~ 408 (465)
..+++ +|.- -|+| +.+||+++|+|.|+....+ ....+ +.. +.|+.+. .-+.+++.++|.
T Consensus 364 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~----~~d~~~la~~i~ 432 (473)
T TIGR02095 364 AGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFE----EYDPGALLAALS 432 (473)
T ss_pred HhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeC----CCCHHHHHHHHH
Confidence 88888 6643 2444 7889999999999866532 22233 332 7787774 457899999999
Q ss_pred HHhc
Q 012342 409 EMME 412 (465)
Q Consensus 409 ~~l~ 412 (465)
+++.
T Consensus 433 ~~l~ 436 (473)
T TIGR02095 433 RALR 436 (473)
T ss_pred HHHH
Confidence 9886
No 111
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.24 E-value=0.44 Score=46.82 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=95.2
Q ss_pred CceeEEeeccccCCCHHHHHHHHHHH----HhCCCCEEEEEcCCCCCCCcCCCchhHH-HHhc--cCceE---eeccChh
Q 012342 266 KSVIYVNFGSFIFMNKQQLIEVAMGL----VNSNHPFLWIIRPDLVTGETADLPAEFE-VKAK--EKGFV---ASWCPQE 335 (465)
Q Consensus 266 ~~~V~vs~GS~~~~~~~~~~~~~~al----~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~v---~~~~p~~ 335 (465)
+..|.|++=-..+.. +.+.++..++ +.. ..+.++......+ .-.++. .++. +++.+ .+|.+..
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~~-----~v~e~~~~~L~~~~~v~li~pl~~~~f~ 276 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPRP-----RVRELVLKRLKNVERVKLIDPLGYLDFH 276 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCCh-----hhhHHHHHHhCCCCcEEEeCCcchHHHH
Confidence 348888765554444 4455555544 344 2333343332111 111222 2333 34666 5778888
Q ss_pred hhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 336 EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 336 ~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
.++.++-+ ++|..|.. .-||...|+|.+++=...++|. ++ + .|.-+.+. .+.+.|.+++.+++++++
T Consensus 277 ~L~~~a~~--iltDSGgi-qEEAp~lg~Pvl~lR~~TERPE---~v-~-agt~~lvg-----~~~~~i~~~~~~ll~~~~ 343 (383)
T COG0381 277 NLMKNAFL--ILTDSGGI-QEEAPSLGKPVLVLRDTTERPE---GV-E-AGTNILVG-----TDEENILDAATELLEDEE 343 (383)
T ss_pred HHHHhceE--EEecCCch-hhhHHhcCCcEEeeccCCCCcc---ce-e-cCceEEeC-----ccHHHHHHHHHHHhhChH
Confidence 99999987 99988753 5789999999999999999998 33 3 46655553 367999999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 012342 416 GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVN 449 (465)
Q Consensus 416 ~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 449 (465)
..+|-+....- .++|.+|++.++.+..
T Consensus 344 ---~~~~m~~~~np----Ygdg~as~rIv~~l~~ 370 (383)
T COG0381 344 ---FYERMSNAKNP----YGDGNASERIVEILLN 370 (383)
T ss_pred ---HHHHHhcccCC----CcCcchHHHHHHHHHH
Confidence 44443333222 2344455544444443
No 112
>PHA01633 putative glycosyl transferase group 1
Probab=96.09 E-value=0.23 Score=48.64 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=63.3
Q ss_pred hccCceEe---eccChh---hhhcCCCcceeeec---CC-chhHHHHHhcCCcEEecCC------CCCh------hhHHH
Q 012342 322 AKEKGFVA---SWCPQE---EVLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPF------TGDQ------PTNGR 379 (465)
Q Consensus 322 ~~~~~~v~---~~~p~~---~~l~~~~~~~~i~h---gG-~~s~~eal~~GvP~i~~P~------~~DQ------~~na~ 379 (465)
+++++.+. +++++. .++..+++ ||.- =| ..+++||+++|+|+|+--. ..|+ ..+..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45677776 455553 57888888 8763 24 3478899999999998633 2232 22232
Q ss_pred hhcc-cceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 012342 380 YVCN-EWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLA 430 (465)
Q Consensus 380 ~~~~-~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~ 430 (465)
..++ +.|.|..+ ...+++++.++|.+++.....+....++++.++++
T Consensus 277 ~~~~~~~g~g~~~----~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 277 EYYDKEHGQKWKI----HKFQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred HhcCcccCceeee----cCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 2222 34677776 55799999999999965332112333444444443
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.03 E-value=0.19 Score=54.18 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=64.3
Q ss_pred ccCceEeeccChh-hhhcCCCcceeee---cCC-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCC
Q 012342 323 KEKGFVASWCPQE-EVLKHPSIGGFLT---HCG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 397 (465)
Q Consensus 323 ~~~~~v~~~~p~~-~~l~~~~~~~~i~---hgG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 397 (465)
.+++.+.+|.++. .+|..+++ ||. +-| -++++||+.+|+|+|+.... .....+ +.-..|+.+.. ++
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~--~d 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPA--DT 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCC--CC
Confidence 4678888988764 58888998 664 445 45889999999999997653 234445 55446777765 56
Q ss_pred CCHHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 012342 398 VIRNEVEKLVREMMEGEK-GKQMRNKAMEWK 427 (465)
Q Consensus 398 ~~~~~l~~ai~~~l~~~~-~~~~~~~a~~l~ 427 (465)
.+.+++.+++.+++.+.. -..+++++++..
T Consensus 644 ~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 644 VTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 666777777777665321 112666655543
No 114
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.84 E-value=0.26 Score=50.01 Aligned_cols=180 Identities=9% Similarity=0.169 Sum_probs=101.5
Q ss_pred hhhcccCCCCceeEEeeccccCC------C----HHHHHHHHHHHHhCCCCEEEEEcCCCC---CCCcCCCchhHHHHhc
Q 012342 257 LQWLDCKEPKSVIYVNFGSFIFM------N----KQQLIEVAMGLVNSNHPFLWIIRPDLV---TGETADLPAEFEVKAK 323 (465)
Q Consensus 257 ~~~l~~~~~~~~V~vs~GS~~~~------~----~~~~~~~~~al~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~ 323 (465)
..|+.....+++|-|+....... . .+.+.++++.|.+.|.++++..-.... ..++......+.+.++
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~ 304 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS 304 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc
Confidence 34554333455787776543211 1 234555666666679888877543211 0000001122223333
Q ss_pred --cCceE-e-eccChh--hhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEE-EecCCC
Q 012342 324 --EKGFV-A-SWCPQE--EVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME-INGDDE 396 (465)
Q Consensus 324 --~~~~v-~-~~~p~~--~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~-~~~~~~ 396 (465)
++..+ . .+-+.+ .+++++++ +|..= .=++.-|+..|||.+.+++ |.-. ...+ +.+|..-. +.. +
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~~K~-~~~~-~~lg~~~~~~~~--~ 375 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--EHKS-AGIM-QQLGLPEMAIDI--R 375 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--hHHH-HHHH-HHcCCccEEech--h
Confidence 23333 2 233443 68999988 88532 2256678999999999998 3322 2223 45666533 444 7
Q ss_pred CCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Q 012342 397 DVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 453 (465)
Q Consensus 397 ~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 453 (465)
.++.++|.+.+.+++++.+ +++++.++..+++++ .+.+...++++.+.+
T Consensus 376 ~l~~~~Li~~v~~~~~~r~--~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQLP--ALNARLAEAVSRERQ------TGMQMVQSVLERIGE 424 (426)
T ss_pred hCCHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHH------HHHHHHHHHHHHhcc
Confidence 7889999999999998764 466665555555553 144566666665543
No 115
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.77 E-value=0.0077 Score=47.35 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=44.0
Q ss_pred hhhhhhcccCCCCceeEEeeccccCC---CH--HHHHHHHHHHHhCCCCEEEEEcCCC
Q 012342 254 TECLQWLDCKEPKSVIYVNFGSFIFM---NK--QQLIEVAMGLVNSNHPFLWIIRPDL 306 (465)
Q Consensus 254 ~~l~~~l~~~~~~~~V~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~l~~~~~~~ 306 (465)
..+..|+...+.++-|+||+||.... .. ..+..+++++...+..+|+++....
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~ 85 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQ 85 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCC
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHH
Confidence 45677999888999999999998643 22 4788899999999999999998653
No 116
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.26 Score=50.45 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=88.0
Q ss_pred CCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHh------ccCceEeeccChh--
Q 012342 264 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA------KEKGFVASWCPQE-- 335 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~p~~-- 335 (465)
+++-+||+||+......++.+..=++-|+..+..++|..+++..+. ....+++.. .++.++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~----~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE----INARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH----HHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 4567999999999988899988888889999999999988752111 111121111 2455565655543
Q ss_pred -hhhcCCCcceeee---cCCchhHHHHHhcCCcEEecCCCCChhh--HHHhhcccceeEEEEecCCCCCCHHHHHHHHH
Q 012342 336 -EVLKHPSIGGFLT---HCGWNSIVESLCSGVPMICWPFTGDQPT--NGRYVCNEWGVGMEINGDDEDVIRNEVEKLVR 408 (465)
Q Consensus 336 -~~l~~~~~~~~i~---hgG~~s~~eal~~GvP~i~~P~~~DQ~~--na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~ 408 (465)
+-+.-+|+ |+- -||+.|+.|+|..|||+|.++ ++|+- |+..++..+|+--.+.. -.++=+.++|.
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~----s~~dYV~~av~ 573 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVAD----SRADYVEKAVA 573 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcC----CHHHHHHHHHH
Confidence 34555666 664 699999999999999999875 56664 55555455666433422 23444555553
No 117
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=95.71 E-value=0.26 Score=50.94 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=76.7
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHH---HHhccCceEeeccChh---hhh
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE---VKAKEKGFVASWCPQE---EVL 338 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~p~~---~~l 338 (465)
+..+++..|.... ...+.+.+.+..+.+.+.+|+++-.+... +.+.+. ++..+++.+..-.++. .++
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPE------YEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHH------HHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 3467777788763 23455555555555555666655443210 111222 2224566654333332 477
Q ss_pred cCCCcceeeec---CCc-hhHHHHHhcCCcEEecCCCC--ChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 339 KHPSIGGFLTH---CGW-NSIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 339 ~~~~~~~~i~h---gG~-~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
..+++ ++.- -|+ .+.+||+++|+|.|+....+ |.-.+...- .+-|.|+.+. .-+.+++.++|.++++
T Consensus 369 ~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~----~~~~~~l~~~i~~~l~ 441 (476)
T cd03791 369 AGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFE----GYNADALLAALRRALA 441 (476)
T ss_pred HhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeC----CCCHHHHHHHHHHHHH
Confidence 88888 6643 122 37899999999999876533 211111111 1235788884 3578999999999885
Q ss_pred C
Q 012342 413 G 413 (465)
Q Consensus 413 ~ 413 (465)
.
T Consensus 442 ~ 442 (476)
T cd03791 442 L 442 (476)
T ss_pred H
Confidence 3
No 118
>PRK00654 glgA glycogen synthase; Provisional
Probab=95.68 E-value=0.4 Score=49.52 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=75.8
Q ss_pred CceeEEeeccccC-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchh---HHHHhccCceE-eeccCh--hhhh
Q 012342 266 KSVIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAE---FEVKAKEKGFV-ASWCPQ--EEVL 338 (465)
Q Consensus 266 ~~~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v-~~~~p~--~~~l 338 (465)
+.++++..|.... ...+.+.+.+..+.+.+.+++++-.+... +.+. +.++.+.++.+ .+|-.+ ..++
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~------~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~ 354 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPE------LEEAFRALAARYPGKVGVQIGYDEALAHRIY 354 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHH------HHHHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 3467777788752 33444444444444446777766432210 1112 22234455543 466333 2478
Q ss_pred cCCCcceeeec---CCch-hHHHHHhcCCcEEecCCCC--ChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 339 KHPSIGGFLTH---CGWN-SIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 339 ~~~~~~~~i~h---gG~~-s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
..+++ ||.- -|+| +.+||+++|+|.|+....+ |.-.+...- .+-+.|+.+. .-+.+++.++|.++++
T Consensus 355 ~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~----~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 355 AGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFD----DFNAEDLLRALRRALE 427 (466)
T ss_pred hhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeC----CCCHHHHHHHHHHHHH
Confidence 88998 7743 3444 8889999999999865432 211111100 1126787774 3578999999999886
No 119
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=95.68 E-value=0.45 Score=47.27 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=90.8
Q ss_pred CCCceeEEeeccccCCCHHHHHHHHHHH---Hh--CCCCEEEEEcCCCCCCCcCCCchh-HHH---HhccCceEeec-cC
Q 012342 264 EPKSVIYVNFGSFIFMNKQQLIEVAMGL---VN--SNHPFLWIIRPDLVTGETADLPAE-FEV---KAKEKGFVASW-CP 333 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~~~~~~al---~~--~~~~~l~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~v~~~-~p 333 (465)
+++++|.+--||-.+-=...+-.+++++ .+ .+.+|++...... ... +.+ ....++.+.-. -.
T Consensus 182 ~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~--------~~~~i~~~~~~~~~~~~~~~~~~~ 253 (373)
T PF02684_consen 182 PDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV--------HEELIEEILAEYPPDVSIVIIEGE 253 (373)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH--------HHHHHHHHHHhhCCCCeEEEcCCc
Confidence 3456999999996532122223344443 33 2455555543221 112 111 11223333222 23
Q ss_pred hhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCC-CCChhhHHHhhcccceeEEE--EecCC-------CCCCHHHH
Q 012342 334 QEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF-TGDQPTNGRYVCNEWGVGME--INGDD-------EDVIRNEV 403 (465)
Q Consensus 334 ~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~-~~DQ~~na~~~~~~~g~g~~--~~~~~-------~~~~~~~l 403 (465)
-.+++..+++ .+.-.|- .|+|+...|+|+|++=- ..=-...|++++.--=+|+. +.... +..+++.|
T Consensus 254 ~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i 330 (373)
T PF02684_consen 254 SYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENI 330 (373)
T ss_pred hHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHH
Confidence 4568888888 6665554 57899999999998643 33345567766321112211 11111 57899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchH
Q 012342 404 EKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSS 441 (465)
Q Consensus 404 ~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 441 (465)
.+++.++|.|++ .++..+...+.+++..+.|.++.
T Consensus 331 ~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 365 (373)
T PF02684_consen 331 AAELLELLENPE---KRKKQKELFREIRQLLGPGASSR 365 (373)
T ss_pred HHHHHHHhcCHH---HHHHHHHHHHHHHHhhhhccCCH
Confidence 999999999886 45555555555555444555543
No 120
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=95.54 E-value=0.11 Score=51.75 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=78.6
Q ss_pred CceeEEeecccc---CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHh--ccCceEeecc---Chhhh
Q 012342 266 KSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFVASWC---PQEEV 337 (465)
Q Consensus 266 ~~~V~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~---p~~~~ 337 (465)
++.|+|++=... ....+.+.++++++.+.+.+++++...... .+. .+...+.+.. .+++.+.+-+ ....+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p-~~~-~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA-GSR-IINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC-Cch-HHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 458778875532 344678999999998887666666533211 100 0111112111 3567776554 44568
Q ss_pred hcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEE-EecCCCCCCHHHHHHHHHHHh
Q 012342 338 LKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGME-INGDDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 338 l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~-~~~~~~~~~~~~l~~ai~~~l 411 (465)
+.++++ +||..+.+- .||...|+|.|.+- +.+ . . .+.|..+. +. .+.++|.+++.+++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e-~-~~~g~nvl~vg-----~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---K-G-RLRADSVIDVD-----PDKEEIVKAIEKLL 337 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---h-h-hhhcCeEEEeC-----CCHHHHHHHHHHHh
Confidence 999999 999886555 99999999999764 211 0 1 11233222 32 37899999999954
No 121
>PLN02316 synthase/transferase
Probab=95.43 E-value=0.72 Score=51.57 Aligned_cols=169 Identities=5% Similarity=-0.025 Sum_probs=91.2
Q ss_pred eeEEeeccccC-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchh---HHHHh----ccCceEeeccChh---h
Q 012342 268 VIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAE---FEVKA----KEKGFVASWCPQE---E 336 (465)
Q Consensus 268 ~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~v~~~~p~~---~ 336 (465)
+++...|.... ...+.+.+.+..+.+.+.++|++ |.+.... +... +..++ ++++.+....+.. .
T Consensus 841 plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIv-G~Gpd~~----~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~ 915 (1036)
T PLN02316 841 PLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLL-GSAPDPR----IQNDFVNLANQLHSSHHDRARLCLTYDEPLSHL 915 (1036)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEE-eCCCCHH----HHHHHHHHHHHhCccCCCeEEEEecCCHHHHHH
Confidence 45555666652 23344444333333346677654 4331100 1112 22222 3456655444543 5
Q ss_pred hhcCCCcceeeecC---C-chhHHHHHhcCCcEEecCCCC--ChhhH-------HHhhcccceeEEEEecCCCCCCHHHH
Q 012342 337 VLKHPSIGGFLTHC---G-WNSIVESLCSGVPMICWPFTG--DQPTN-------GRYVCNEWGVGMEINGDDEDVIRNEV 403 (465)
Q Consensus 337 ~l~~~~~~~~i~hg---G-~~s~~eal~~GvP~i~~P~~~--DQ~~n-------a~~~~~~~g~g~~~~~~~~~~~~~~l 403 (465)
++..+++ |+.-. | -.+.+||+++|+|.|+....+ |.-.. +... ..-+.|+.+ ...+++.|
T Consensus 916 iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~-g~~~tGflf----~~~d~~aL 988 (1036)
T PLN02316 916 IYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQ-GLEPNGFSF----DGADAAGV 988 (1036)
T ss_pred HHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccc-ccCCceEEe----CCCCHHHH
Confidence 8888888 87432 2 348999999999988865533 22111 1110 112567777 44688999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHh
Q 012342 404 EKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILL 453 (465)
Q Consensus 404 ~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 453 (465)
..+|.++|.+ |.+..+.+++..++++...=|-...+.+.++....
T Consensus 989 a~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 989 DYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred HHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 9999999975 33444445555555554455555555555554443
No 122
>PLN02275 transferase, transferring glycosyl groups
Probab=95.41 E-value=0.17 Score=50.54 Aligned_cols=75 Identities=16% Similarity=0.303 Sum_probs=52.4
Q ss_pred cCceEe-eccChhh---hhcCCCcceeee-c-----CC-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEe
Q 012342 324 EKGFVA-SWCPQEE---VLKHPSIGGFLT-H-----CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 392 (465)
Q Consensus 324 ~~~~v~-~~~p~~~---~l~~~~~~~~i~-h-----gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~ 392 (465)
+|+.+. +|+|+.+ +|..+|+ ||. + -| -+++.||+++|+|+|+.... .+...+ +.-+.|+.+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv-~~g~~G~lv- 357 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELV-KDGKNGLLF- 357 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHc-cCCCCeEEE-
Confidence 345554 4788755 5999999 663 1 12 34799999999999996542 245555 666678777
Q ss_pred cCCCCCCHHHHHHHHHHHh
Q 012342 393 GDDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 393 ~~~~~~~~~~l~~ai~~~l 411 (465)
+ +.+++.++|.+++
T Consensus 358 ---~--~~~~la~~i~~l~ 371 (371)
T PLN02275 358 ---S--SSSELADQLLELL 371 (371)
T ss_pred ---C--CHHHHHHHHHHhC
Confidence 4 4788999888764
No 123
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.37 E-value=0.69 Score=48.18 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=50.5
Q ss_pred ccCceEeeccCh-hhhhcCCCcceeeec---CC-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCC
Q 012342 323 KEKGFVASWCPQ-EEVLKHPSIGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 397 (465)
Q Consensus 323 ~~~~~v~~~~p~-~~~l~~~~~~~~i~h---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 397 (465)
.+++.+.+|..+ ..+|..+++ ||.. -| -+++.||+++|+|+|+.... .+...+ ++-..|+.+..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV-~dG~nG~LVp~---- 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECF-IEGVSGFILDD---- 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHc-ccCCcEEEECC----
Confidence 467888888665 358899999 8753 34 56899999999999987653 344555 55566777754
Q ss_pred CCHHHHHHHH
Q 012342 398 VIRNEVEKLV 407 (465)
Q Consensus 398 ~~~~~l~~ai 407 (465)
-+.+.+.+++
T Consensus 523 ~D~~aLa~ai 532 (578)
T PRK15490 523 AQTVNLDQAC 532 (578)
T ss_pred CChhhHHHHH
Confidence 2344454444
No 124
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.26 E-value=0.71 Score=48.36 Aligned_cols=161 Identities=13% Similarity=0.072 Sum_probs=84.0
Q ss_pred CCCCceeEEeeccccCCCHHHHHHHHHHHH--hC--CCCEEEEEcCCCCCCCcCCCchhHHHHhcc-C---ceEeeccCh
Q 012342 263 KEPKSVIYVNFGSFIFMNKQQLIEVAMGLV--NS--NHPFLWIIRPDLVTGETADLPAEFEVKAKE-K---GFVASWCPQ 334 (465)
Q Consensus 263 ~~~~~~V~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~v~~~~p~ 334 (465)
.+++++|-+--||-.+-=...+-.++++.+ .. +.+|++...... ..+.+.+...+ + +.+..--..
T Consensus 410 ~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~-------~~~~i~~~~~~~~~~~~~ii~~~~~ 482 (608)
T PRK01021 410 PSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK-------YDHLILEVLQQEGCLHSHIVPSQFR 482 (608)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh-------hHHHHHHHHhhcCCCCeEEecCcch
Confidence 345578999999965322233444555555 32 345555332211 11122222211 1 122210012
Q ss_pred hhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCC-CCChhhHHHhhcc----cce---------eEEEEe--cCCCCC
Q 012342 335 EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF-TGDQPTNGRYVCN----EWG---------VGMEIN--GDDEDV 398 (465)
Q Consensus 335 ~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~-~~DQ~~na~~~~~----~~g---------~g~~~~--~~~~~~ 398 (465)
.+++..+++ .+.-.|- -|+|+...|+|||++=- ..=-...++++.. ..+ +--++- . ++.
T Consensus 483 ~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ--~~~ 557 (608)
T PRK01021 483 YELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGK--KDF 557 (608)
T ss_pred HHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCc--ccC
Confidence 578999998 7777775 47899999999998532 2222345565532 011 111111 2 467
Q ss_pred CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCc
Q 012342 399 IRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGS 439 (465)
Q Consensus 399 ~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 439 (465)
+++.|.+++ +.|.|++ .+++.++=-+++++.+++|.+
T Consensus 558 tpe~La~~l-~lL~d~~---~r~~~~~~l~~lr~~Lg~~~~ 594 (608)
T PRK01021 558 QPEEVAAAL-DILKTSQ---SKEKQKDACRDLYQAMNESAS 594 (608)
T ss_pred CHHHHHHHH-HHhcCHH---HHHHHHHHHHHHHHHhcCCCC
Confidence 899999997 7887775 344444333444444444443
No 125
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.00 E-value=0.15 Score=52.47 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=78.9
Q ss_pred CCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHH------hccCceEeeccChhh-
Q 012342 264 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK------AKEKGFVASWCPQEE- 336 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~p~~~- 336 (465)
+++-+||.+|--....+++.+..-++-|...+..++|..+.+...+ ..|... -++++.+.+-+...+
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge------~rf~ty~~~~Gl~p~riifs~va~k~eH 829 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEH 829 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch------HHHHHHHHHhCCCccceeeccccchHHH
Confidence 3455888888777777888888888888999999999999764322 122211 135555544433221
Q ss_pred ----hhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEe
Q 012342 337 ----VLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 392 (465)
Q Consensus 337 ----~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~ 392 (465)
.|....+.-+.+. |..|.++.++.|||||.+|.-.---..|..+.-.+|+|.-+.
T Consensus 830 vrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hlia 888 (966)
T KOG4626|consen 830 VRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIA 888 (966)
T ss_pred HHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHh
Confidence 2322222224444 788999999999999999985544444444335688887554
No 126
>PHA01630 putative group 1 glycosyl transferase
Probab=94.95 E-value=0.8 Score=44.92 Aligned_cols=111 Identities=10% Similarity=0.043 Sum_probs=61.1
Q ss_pred eccChhh---hhcCCCcceeee---cCC-chhHHHHHhcCCcEEecCCCC--Chhh---HHHhhccc-----------ce
Q 012342 330 SWCPQEE---VLKHPSIGGFLT---HCG-WNSIVESLCSGVPMICWPFTG--DQPT---NGRYVCNE-----------WG 386 (465)
Q Consensus 330 ~~~p~~~---~l~~~~~~~~i~---hgG-~~s~~eal~~GvP~i~~P~~~--DQ~~---na~~~~~~-----------~g 386 (465)
.++|+.+ ++..+++ |+. ..| ..++.||+++|+|+|+.-..+ |.-. |+-.+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 3466544 7888888 653 233 458999999999999976543 3211 22111 10 23
Q ss_pred eEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 012342 387 VGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEIL 452 (465)
Q Consensus 387 ~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 452 (465)
+|..+. .+.+++.+++.++|.|++-+.++++.+.-+...++ .-+-+...+++.+.+.
T Consensus 273 ~G~~v~-----~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 273 VGYFLD-----PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKILE 329 (331)
T ss_pred cccccC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHh
Confidence 454442 26778888888888764211244443333333332 3444555555555443
No 127
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.73 E-value=0.44 Score=36.80 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=53.1
Q ss_pred cCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccce-eEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012342 349 HCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWG-VGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAMEWK 427 (465)
Q Consensus 349 hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g-~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~ 427 (465)
+|-..-+.|++++|+|+|+-.. ......+ +. | -++.. + +.+++..+|..+++|+. ..++.+++..
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~----~--~~~el~~~i~~ll~~~~--~~~~ia~~a~ 74 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITY----N--DPEELAEKIEYLLENPE--ERRRIAKNAR 74 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEE----C--CHHHHHHHHHHHHCCHH--HHHHHHHHHH
Confidence 3445588999999999999766 3444444 32 4 33334 3 89999999999999875 3444444444
Q ss_pred HHHHHHhCCCCchHHHHHHHH
Q 012342 428 GLAEEAAAPHGSSSLNLDKLV 448 (465)
Q Consensus 428 ~~~~~~~~~~g~~~~~~~~~~ 448 (465)
+.+++ .-+....+++++
T Consensus 75 ~~v~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 75 ERVLK----RHTWEHRAEQIL 91 (92)
T ss_pred HHHHH----hCCHHHHHHHHH
Confidence 55553 445555555554
No 128
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=94.12 E-value=1.1 Score=44.10 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=97.1
Q ss_pred CCCCceeEEeeccccCCCHHHHHHHHHH---HHh--CCCCEEEEEcCCCCCCCcCCCchhHHH-HhccCc-eEeecc-Ch
Q 012342 263 KEPKSVIYVNFGSFIFMNKQQLIEVAMG---LVN--SNHPFLWIIRPDLVTGETADLPAEFEV-KAKEKG-FVASWC-PQ 334 (465)
Q Consensus 263 ~~~~~~V~vs~GS~~~~~~~~~~~~~~a---l~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~~~-p~ 334 (465)
..++.++.+--||-.+--...+..+.++ |.. .+.+|++-+-... -..... ....+. ...-++ ++
T Consensus 185 ~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 256 (381)
T COG0763 185 DADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK--------YRRIIEEALKWEVAGLSLILIDG 256 (381)
T ss_pred CCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH--------HHHHHHHHhhccccCceEEecCc
Confidence 3445699999999754222223333444 432 3567766554321 011111 111121 122222 22
Q ss_pred --hhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCC-CCChhhHHHhhcccceeEEE-EecCC--------CCCCHHH
Q 012342 335 --EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF-TGDQPTNGRYVCNEWGVGME-INGDD--------EDVIRNE 402 (465)
Q Consensus 335 --~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~-~~DQ~~na~~~~~~~g~g~~-~~~~~--------~~~~~~~ 402 (465)
..++..+|+ .+.-+|-. +.|+..+|+|||+.=- ..=-...++++..-.=+++. +-.++ +.++++.
T Consensus 257 ~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~ 333 (381)
T COG0763 257 EKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPEN 333 (381)
T ss_pred hHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHH
Confidence 237878887 77777654 6899999999998532 11123345555332222211 11110 5688999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 012342 403 VEKLVREMMEGEK-GKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 451 (465)
Q Consensus 403 l~~ai~~~l~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 451 (465)
|.+++..++.|+. -+++++...++.+.++ .+++++.+.+.+++.+
T Consensus 334 la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 334 LARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELL 379 (381)
T ss_pred HHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHh
Confidence 9999999998873 2456777777776666 4567777777777655
No 129
>PLN02939 transferase, transferring glycosyl groups
Probab=93.87 E-value=2.4 Score=46.95 Aligned_cols=137 Identities=6% Similarity=-0.005 Sum_probs=75.1
Q ss_pred eeEEeeccccC-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHh--ccCceEeeccChh---hhhcCC
Q 012342 268 VIYVNFGSFIF-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFVASWCPQE---EVLKHP 341 (465)
Q Consensus 268 ~V~vs~GS~~~-~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~p~~---~~l~~~ 341 (465)
+++...|.... ...+.+...+..+...+.+++++-.+... .....+ ..+..+. .+++.+..+.+.. .++..+
T Consensus 780 pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~-~~e~eL-~~La~~l~l~drV~FlG~~de~lah~IYAaA 857 (977)
T PLN02939 780 PLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVP-HIQREF-EGIADQFQSNNNIRLILKYDEALSHSIYAAS 857 (977)
T ss_pred eEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcH-HHHHHH-HHHHHHcCCCCeEEEEeccCHHHHHHHHHhC
Confidence 55566666652 23344444333333346666555433210 000000 1222222 3567777887764 488899
Q ss_pred CcceeeecC---C-chhHHHHHhcCCcEEecCCCC--ChhhH--HHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 342 SIGGFLTHC---G-WNSIVESLCSGVPMICWPFTG--DQPTN--GRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 342 ~~~~~i~hg---G-~~s~~eal~~GvP~i~~P~~~--DQ~~n--a~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
++ ||.-. | ..+.+||+++|+|.|+....+ |--.+ ...+.+.-+.|+.+. ..+.+++..+|.+++.
T Consensus 858 DI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~----~~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 858 DM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL----TPDEQGLNSALERAFN 930 (977)
T ss_pred CE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec----CCCHHHHHHHHHHHHH
Confidence 98 88531 2 347899999999999876644 21111 111112235677774 3578889999988774
No 130
>PRK10125 putative glycosyl transferase; Provisional
Probab=91.81 E-value=5.5 Score=40.29 Aligned_cols=115 Identities=9% Similarity=-0.005 Sum_probs=65.8
Q ss_pred eeEEeeccccCCCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCcCCCchhHHHHhccCceEeeccC-h---hhhhcCCC
Q 012342 268 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPF-LWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP-Q---EEVLKHPS 342 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p-~---~~~l~~~~ 342 (465)
.+++..|.........+..+++|+...+..+ ++.+|.... . ..+++...++.. + ..+++.++
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~---------~----~~~~v~~~g~~~~~~~l~~~y~~aD 308 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP---------F----TAGNVVNHGFETDKRKLMSALNQMD 308 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc---------c----cccceEEecCcCCHHHHHHHHHhCC
Confidence 3444455533222334566788887765443 444453211 0 123445555543 2 34666788
Q ss_pred cceeeecC----CchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHH
Q 012342 343 IGGFLTHC----GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLV 407 (465)
Q Consensus 343 ~~~~i~hg----G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai 407 (465)
+ ||.-. --++++||+++|+|+|+....+ ....+ +. +.|+.+.. -+.++|.+++
T Consensus 309 v--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~----~d~~~La~~~ 365 (405)
T PRK10125 309 A--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSE----EEVLQLAQLS 365 (405)
T ss_pred E--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECC----CCHHHHHhcc
Confidence 7 77532 3458899999999999987764 22233 43 46877754 3677777654
No 131
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=91.20 E-value=27 Score=38.38 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=50.2
Q ss_pred ccCceEeecc-Ch---hhhhcC-CC-cceeeec---CC-chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEe
Q 012342 323 KEKGFVASWC-PQ---EEVLKH-PS-IGGFLTH---CG-WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEIN 392 (465)
Q Consensus 323 ~~~~~v~~~~-p~---~~~l~~-~~-~~~~i~h---gG-~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~ 392 (465)
.+++.+.++. +. ..++.+ ++ .++||.- =| ..+++||+++|+|+|+--.. .....+ +.-..|+.++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV-~dg~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEII-QDGVSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEEeC
Confidence 3566666664 32 234442 21 1227742 23 34899999999999986543 344455 5445687885
Q ss_pred cCCCCCCHHHHHHHHHHHh
Q 012342 393 GDDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 393 ~~~~~~~~~~l~~ai~~~l 411 (465)
. -+.+++.++|.+++
T Consensus 693 p----~D~eaLA~aL~~ll 707 (784)
T TIGR02470 693 P----YHGEEAAEKIVDFF 707 (784)
T ss_pred C----CCHHHHHHHHHHHH
Confidence 3 47899999998876
No 132
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.66 E-value=1.3 Score=39.68 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=37.4
Q ss_pred ccCceEeeccCh---hh-hhcCCCcceeeecCC----chhHHHHHhcCCcEEecCCCCCh
Q 012342 323 KEKGFVASWCPQ---EE-VLKHPSIGGFLTHCG----WNSIVESLCSGVPMICWPFTGDQ 374 (465)
Q Consensus 323 ~~~~~v~~~~p~---~~-~l~~~~~~~~i~hgG----~~s~~eal~~GvP~i~~P~~~DQ 374 (465)
.+|+.+.++++. .. ++..+++ +|+-.. .+++.||+.+|+|+|+.+....+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 568888888632 22 4444888 777776 78999999999999998875543
No 133
>PRK14099 glycogen synthase; Provisional
Probab=89.87 E-value=7.9 Score=40.20 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=68.5
Q ss_pred eeEEeecccc-CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHH---HHhccCc-eEeeccChhh-hh-cC
Q 012342 268 VIYVNFGSFI-FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE---VKAKEKG-FVASWCPQEE-VL-KH 340 (465)
Q Consensus 268 ~V~vs~GS~~-~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~v~~~~p~~~-~l-~~ 340 (465)
+++...|... ....+.+.+.+..+.+.+.+++++-.+... +.+.+. ++.++++ .+.+|-.+.. ++ ..
T Consensus 296 ~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~------~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~ 369 (485)
T PRK14099 296 LLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAE------LEARFRAAAQAYPGQIGVVIGYDEALAHLIQAG 369 (485)
T ss_pred cEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHH------HHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhc
Confidence 4444456654 233444444444444446666655443210 112222 2234454 3467633322 34 35
Q ss_pred CCcceeee---cCCc-hhHHHHHhcCCcEEecCCCC--ChhhHHHhhccc--ceeEEEEecCCCCCCHHHHHHHHHH---
Q 012342 341 PSIGGFLT---HCGW-NSIVESLCSGVPMICWPFTG--DQPTNGRYVCNE--WGVGMEINGDDEDVIRNEVEKLVRE--- 409 (465)
Q Consensus 341 ~~~~~~i~---hgG~-~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~--~g~g~~~~~~~~~~~~~~l~~ai~~--- 409 (465)
+++ |+. +=|. .+.+||+++|+|.|+....+ |--.......+. -+.|+.+. .-+.+++.++|.+
T Consensus 370 aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~----~~d~~~La~ai~~a~~ 443 (485)
T PRK14099 370 ADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS----PVTADALAAALRKTAA 443 (485)
T ss_pred CCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeC----CCCHHHHHHHHHHHHH
Confidence 777 774 3343 37789999997766654322 211111111011 14677774 3578999999987
Q ss_pred HhcCC
Q 012342 410 MMEGE 414 (465)
Q Consensus 410 ~l~~~ 414 (465)
+++|+
T Consensus 444 l~~d~ 448 (485)
T PRK14099 444 LFADP 448 (485)
T ss_pred HhcCH
Confidence 55554
No 134
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.15 E-value=4.3 Score=41.75 Aligned_cols=102 Identities=11% Similarity=0.135 Sum_probs=66.7
Q ss_pred eccChhh---hhcCCCcceeee---cCCch-hHHHHHhcCCc----EEecCCCCChhhHHHhhcccceeEEEEecCCCCC
Q 012342 330 SWCPQEE---VLKHPSIGGFLT---HCGWN-SIVESLCSGVP----MICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDV 398 (465)
Q Consensus 330 ~~~p~~~---~l~~~~~~~~i~---hgG~~-s~~eal~~GvP----~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~ 398 (465)
+.+++.+ ++..+++ |+. +=|+| ++.|++++|+| +|+--+.+- +..+ +-|+.+. ..
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l----~~gllVn----P~ 407 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL----NGALLVN----PY 407 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh----CCcEEEC----CC
Confidence 4556654 6788888 775 34655 77799999999 666544432 2223 2466664 35
Q ss_pred CHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 012342 399 IRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 451 (465)
Q Consensus 399 ~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 451 (465)
+.+++.++|.++|+.+. ++.+++.+++.+.+.+ -+...-.+.|++.+
T Consensus 408 d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l 454 (456)
T TIGR02400 408 DIDGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDL 454 (456)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHh
Confidence 79999999999998653 1355566666666552 45666677777665
No 135
>PLN00142 sucrose synthase
Probab=87.77 E-value=40 Score=37.16 Aligned_cols=69 Identities=13% Similarity=0.255 Sum_probs=44.2
Q ss_pred eeec---CCch-hHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHh----cCCh-H
Q 012342 346 FLTH---CGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM----EGEK-G 416 (465)
Q Consensus 346 ~i~h---gG~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l----~~~~-~ 416 (465)
||.- =|+| ++.||+++|+|+|+.... .....+ +.-..|+.+.. -+.+++.++|.+++ .|++ .
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV-~dG~tG~LV~P----~D~eaLA~aI~~lLekLl~Dp~lr 740 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEII-VDGVSGFHIDP----YHGDEAANKIADFFEKCKEDPSYW 740 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEEeCC----CCHHHHHHHHHHHHHHhcCCHHHH
Confidence 7653 4544 899999999999986543 344444 55456877753 46788888877654 5654 2
Q ss_pred HHHHHHH
Q 012342 417 KQMRNKA 423 (465)
Q Consensus 417 ~~~~~~a 423 (465)
++|.++|
T Consensus 741 ~~mg~~A 747 (815)
T PLN00142 741 NKISDAG 747 (815)
T ss_pred HHHHHHH
Confidence 2344444
No 136
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=87.70 E-value=3.9 Score=39.63 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=65.5
Q ss_pred CceeEEeeccc---cCCCHHHHHH----HHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHH----hc--cCceE---e
Q 012342 266 KSVIYVNFGSF---IFMNKQQLIE----VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK----AK--EKGFV---A 329 (465)
Q Consensus 266 ~~~V~vs~GS~---~~~~~~~~~~----~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~v---~ 329 (465)
++.|-|-.|.- ..++.+.... +...++..+..+++.++.. -|+...+. .. ..+.+ .
T Consensus 146 ~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRR--------Tp~~~~~~L~~~~~~~~~~~~~~~~ 217 (311)
T PF06258_consen 146 RPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRR--------TPPEAEAALRELLKDNPGVYIWDGT 217 (311)
T ss_pred CCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCC--------CcHHHHHHHHHhhcCCCceEEecCC
Confidence 45666666643 2456663333 3334445565666555433 23333332 21 22222 2
Q ss_pred eccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhh---HHHhhcccceeEEEEe
Q 012342 330 SWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPT---NGRYVCNEWGVGMEIN 392 (465)
Q Consensus 330 ~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~---na~~~~~~~g~g~~~~ 392 (465)
+.=|+..+|..++. .+||==-.+-+.||+..|+|+.++|.-.-... ..+.+ ++.|.-..+.
T Consensus 218 ~~nPy~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 218 GENPYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred CCCcHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHH-HHCCCEEECC
Confidence 23367889999987 34444446677899999999999999662111 22344 4567766654
No 137
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=86.85 E-value=6.6 Score=38.07 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=79.8
Q ss_pred hcccCCCCceeEEeecccc---CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeec--cC
Q 012342 259 WLDCKEPKSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASW--CP 333 (465)
Q Consensus 259 ~l~~~~~~~~V~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~p 333 (465)
++....+++.|.+..|+.. .++.+.+.++++.|.+.+.++++..++.... .....+.+..+ +..+.+- ++
T Consensus 172 ~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~----~~~~~i~~~~~-~~~l~g~~sL~ 246 (319)
T TIGR02193 172 FLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEK----QRAERIAEALP-GAVVLPKMSLA 246 (319)
T ss_pred hhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHH----HHHHHHHhhCC-CCeecCCCCHH
Confidence 4433333557777777643 5678899999999977777877665532100 01112222222 2233333 34
Q ss_pred h-hhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeE-EEEecCC-CCCCHHHHHHHHHHH
Q 012342 334 Q-EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVG-MEINGDD-EDVIRNEVEKLVREM 410 (465)
Q Consensus 334 ~-~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g-~~~~~~~-~~~~~~~l~~ai~~~ 410 (465)
+ ..+++++++ ||+. -.|.++=|.+.|+|+|++ +....+ .+. .=+|-. ..+.... +.++.+++.++++++
T Consensus 247 el~ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~l-fg~t~p---~~~-~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~ 318 (319)
T TIGR02193 247 EVAALLAGADA--VVGV-DTGLTHLAAALDKPTVTL-YGATDP---GRT-GGYGKPNVALLGESGANPTPDEVLAALEEL 318 (319)
T ss_pred HHHHHHHcCCE--EEeC-CChHHHHHHHcCCCEEEE-ECCCCH---hhc-ccCCCCceEEccCccCCCCHHHHHHHHHhh
Confidence 4 458999998 8886 667888889999999976 211111 111 001111 0011100 789999999999876
Q ss_pred h
Q 012342 411 M 411 (465)
Q Consensus 411 l 411 (465)
|
T Consensus 319 ~ 319 (319)
T TIGR02193 319 L 319 (319)
T ss_pred C
Confidence 4
No 138
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=86.06 E-value=2.3 Score=44.37 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=64.6
Q ss_pred cCceEeeccC--h-hhhhcCCCcceeeecC---CchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCC
Q 012342 324 EKGFVASWCP--Q-EEVLKHPSIGGFLTHC---GWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 397 (465)
Q Consensus 324 ~~~~v~~~~p--~-~~~l~~~~~~~~i~hg---G~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 397 (465)
..+.+.++.. + ..++....+ +|.=+ |.++.+||+++|+|+| .......| +...=|.-+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEeC-----
Confidence 4566688877 4 357878877 88755 7789999999999999 33334444 5555566662
Q ss_pred CCHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHH
Q 012342 398 VIRNEVEKLVREMMEGEK-GKQMRNKAMEWKGLAE 431 (465)
Q Consensus 398 ~~~~~l~~ai~~~l~~~~-~~~~~~~a~~l~~~~~ 431 (465)
+.++|.++|...|.+.+ ...+...|-+.+++..
T Consensus 474 -d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 -DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred -CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999874 3345555555555544
No 139
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=83.55 E-value=32 Score=35.20 Aligned_cols=123 Identities=9% Similarity=0.117 Sum_probs=78.4
Q ss_pred CceeEEeeccccCCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCcCCCchhHH--HHhccCceE-eeccC-h-hhhhc
Q 012342 266 KSVIYVNFGSFIFMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFE--VKAKEKGFV-ASWCP-Q-EEVLK 339 (465)
Q Consensus 266 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v-~~~~p-~-~~~l~ 339 (465)
...++++ +.+.++.+....++. +..|=+..+.. ..+.+. ++. +|+.+ .++.+ + ..++.
T Consensus 283 ~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te--------~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~ 346 (438)
T TIGR02919 283 KQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE--------MSSKLMSLDKY-DNVKLYPNITTQKIQELYQ 346 (438)
T ss_pred ccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc--------ccHHHHHHHhc-CCcEEECCcChHHHHHHHH
Confidence 3466665 255566566555553 44554433322 122222 233 56665 57777 4 46999
Q ss_pred CCCcceeeecCC--chhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 340 HPSIGGFLTHCG--WNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 340 ~~~~~~~i~hgG--~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
.+++-+-|+|++ ..++.||+.+|+|++..=...... ..+ .. |..+ ..-+.+++.++|.++|.+++
T Consensus 347 ~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~----~~~~~~~m~~~i~~lL~d~~ 413 (438)
T TIGR02919 347 TCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIF----EHNEVDQLISKLKDLLNDPN 413 (438)
T ss_pred hccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---Ccee----cCCCHHHHHHHHHHHhcCHH
Confidence 999988888876 669999999999999876543322 222 22 3334 33468999999999999875
No 140
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=83.33 E-value=3.8 Score=34.45 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=39.8
Q ss_pred CCCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012342 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~ 55 (465)
++++|++.+.++.+|-.-..-++..|.++|++|++.-..-..+.+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~ 48 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFID 48 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 47899999999999999999999999999999999876554444433
No 141
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=82.84 E-value=2.8 Score=34.85 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=36.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCC
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP 74 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~ 74 (465)
||++++.....| .+.+++.|.++||+|++++.....+..... .++.+..++
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~---------~~i~~~~~~ 51 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII---------EGIKVIRLP 51 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh---------CCeEEEEec
Confidence 577787766666 457799999999999999985443222221 267777775
No 142
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=81.19 E-value=8.5 Score=39.66 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=60.3
Q ss_pred eeccChhh---hhcCCCcceeee---cCCch-hHHHHHhcCCc----EEecCCCCChhhHHHhhcccceeEEEEecCCCC
Q 012342 329 ASWCPQEE---VLKHPSIGGFLT---HCGWN-SIVESLCSGVP----MICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 397 (465)
Q Consensus 329 ~~~~p~~~---~l~~~~~~~~i~---hgG~~-s~~eal~~GvP----~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 397 (465)
.+++++.+ ++..+++ ||. +-|+| ++.||+++|+| +|+--..+- + +...-|+.+. .
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~----~~~~~g~lv~----p 411 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----A----EELSGALLVN----P 411 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----h----hhcCCCEEEC----C
Confidence 46777654 6888888 663 44655 67899999999 544322211 1 1112355563 3
Q ss_pred CCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 012342 398 VIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 451 (465)
Q Consensus 398 ~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 451 (465)
-+.+++.++|.++++++. ++.+.+.++..+.++ .-+...-...++..+
T Consensus 412 ~d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 YDIDEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 578999999999998763 122333333333333 244555556665544
No 143
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.36 E-value=6.1 Score=37.54 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=57.3
Q ss_pred CceE-eeccChhhhhcCCCcceeeecCCchhHH-HHHhcCCcEEecCCCCChhh--HHHhhcccceeEEEEecCCCCCCH
Q 012342 325 KGFV-ASWCPQEEVLKHPSIGGFLTHCGWNSIV-ESLCSGVPMICWPFTGDQPT--NGRYVCNEWGVGMEINGDDEDVIR 400 (465)
Q Consensus 325 ~~~v-~~~~p~~~~l~~~~~~~~i~hgG~~s~~-eal~~GvP~i~~P~~~DQ~~--na~~~~~~~g~g~~~~~~~~~~~~ 400 (465)
|..+ ..|-.+.++|.+.++ .|--+| |.. +++--|+|+|.+|-.+-|+. .|.+=..-+|+.+.+-. ..+
T Consensus 295 nc~l~lsqqsfadiLH~ada--algmAG--TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~----~~a 366 (412)
T COG4370 295 NCSLWLSQQSFADILHAADA--ALGMAG--TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR----PEA 366 (412)
T ss_pred ceEEEEeHHHHHHHHHHHHH--HHHhcc--chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC----Cch
Confidence 4443 566666777777776 554443 444 45789999999999999876 55543245888888754 223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 012342 401 NEVEKLVREMMEGEKGKQMRNKAM 424 (465)
Q Consensus 401 ~~l~~ai~~~l~~~~~~~~~~~a~ 424 (465)
..-..++++++.|+. +....+
T Consensus 367 q~a~~~~q~ll~dp~---r~~air 387 (412)
T COG4370 367 QAAAQAVQELLGDPQ---RLTAIR 387 (412)
T ss_pred hhHHHHHHHHhcChH---HHHHHH
Confidence 333344445899987 555555
No 144
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=77.87 E-value=13 Score=39.07 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=47.4
Q ss_pred ChhhhhcCCCcceeee---cCCch-hHHHHHhcCCcEEecCCCC-ChhhHHHhhcccc-eeEEEEecCC-C--CCCHHHH
Q 012342 333 PQEEVLKHPSIGGFLT---HCGWN-SIVESLCSGVPMICWPFTG-DQPTNGRYVCNEW-GVGMEINGDD-E--DVIRNEV 403 (465)
Q Consensus 333 p~~~~l~~~~~~~~i~---hgG~~-s~~eal~~GvP~i~~P~~~-DQ~~na~~~~~~~-g~g~~~~~~~-~--~~~~~~l 403 (465)
+..+++..+++ ||. +=||| +++||+++|+|+|+-.... ..... ..+ ..- ..|+.+...+ . .-+.++|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v-~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHI-EDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHh-ccCCCceEEEecCCccchHHHHHHH
Confidence 35667888888 554 45655 8999999999999987733 22222 122 211 2455554211 1 2346788
Q ss_pred HHHHHHHhcCC
Q 012342 404 EKLVREMMEGE 414 (465)
Q Consensus 404 ~~ai~~~l~~~ 414 (465)
.+++.++++.+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 88888887543
No 145
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=77.42 E-value=10 Score=41.92 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=64.0
Q ss_pred hhhcCCCcceeee---cCCch-hHHHHHhcCCc---EEecCCCCChhhHHHhhcccce-eEEEEecCCCCCCHHHHHHHH
Q 012342 336 EVLKHPSIGGFLT---HCGWN-SIVESLCSGVP---MICWPFTGDQPTNGRYVCNEWG-VGMEINGDDEDVIRNEVEKLV 407 (465)
Q Consensus 336 ~~l~~~~~~~~i~---hgG~~-s~~eal~~GvP---~i~~P~~~DQ~~na~~~~~~~g-~g~~~~~~~~~~~~~~l~~ai 407 (465)
.++..+++ |+. .=|+| +..|++++|+| ++++.-++ ..+.. +| -|+.+. ..+.+++.++|
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~----l~~~allVn----P~D~~~lA~AI 437 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS----LGAGALLVN----PWNITEVSSAI 437 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh----hcCCeEEEC----CCCHHHHHHHH
Confidence 57888888 664 34777 66799999999 44444222 12221 33 466774 35899999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhcC
Q 012342 408 REMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSN 455 (465)
Q Consensus 408 ~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 455 (465)
.++|+.+. ++.+++.+++.+.+++ -+...-.+.|++.+.+..
T Consensus 438 ~~aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 438 KEALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 99998432 1245555556655553 345566677777766543
No 146
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=76.27 E-value=49 Score=31.93 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=58.1
Q ss_pred cCceE-eeccCh---hhhhcCCCcceeeec--CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCC
Q 012342 324 EKGFV-ASWCPQ---EEVLKHPSIGGFLTH--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 397 (465)
Q Consensus 324 ~~~~v-~~~~p~---~~~l~~~~~~~~i~h--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 397 (465)
+++.+ .+++|. ..+|+.++++-|+++ =|.||+.-.+..|+|+++- .+-+.+.... +.|+-+-... +.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~--e~gv~Vlf~~--d~ 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT--EQGLPVLFTG--DD 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH--hCCCeEEecC--Cc
Confidence 57776 567775 469999999888876 4899999999999999985 3444444433 3466554555 77
Q ss_pred CCHHHHHHHHHHHh
Q 012342 398 VIRNEVEKLVREMM 411 (465)
Q Consensus 398 ~~~~~l~~ai~~~l 411 (465)
++...+.++=+++.
T Consensus 279 L~~~~v~e~~rql~ 292 (322)
T PRK02797 279 LDEDIVREAQRQLA 292 (322)
T ss_pred ccHHHHHHHHHHHH
Confidence 88888877755543
No 147
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=74.80 E-value=6.8 Score=31.78 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=32.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
||++.+.++..|....+-++..|.++|++|...-..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 589999999999999999999999999999776543
No 148
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=73.36 E-value=3.4 Score=34.65 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCcchH
Q 012342 26 AMLKLAKLLHHKGFHITFVNTEFNHR 51 (465)
Q Consensus 26 P~l~La~~L~~rGh~Vt~~t~~~~~~ 51 (465)
=+..|++.|.++||+|+++++.....
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~ 31 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPE 31 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GG
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 36789999999999999999755443
No 149
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=72.57 E-value=20 Score=33.86 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=58.8
Q ss_pred ceeEEeecccc---CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHh-ccCce-Eeec--cCh-hhhh
Q 012342 267 SVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGF-VASW--CPQ-EEVL 338 (465)
Q Consensus 267 ~~V~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-v~~~--~p~-~~~l 338 (465)
+.|.+..|+.. .++.+.+.++++.|...+.++++..+.++. .....+.+.. ..++. +.+- +.+ ..++
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~-----~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li 196 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAER-----ELAEEIAAALGGPRVVNLAGKTSLRELAALL 196 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhH-----HHHHHHHHhcCCCccccCcCCCCHHHHHHHH
Confidence 46777777653 567889999999998778888766443210 0111222222 12222 2222 233 4588
Q ss_pred cCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 339 KHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 339 ~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
.++++ +|+.-. |.++=|...|+|+|++
T Consensus 197 ~~~~l--~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 197 ARADL--VVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HhCCE--EEeeCC-HHHHHHHHcCCCEEEE
Confidence 89998 999854 6677778999999886
No 150
>PRK10307 putative glycosyl transferase; Provisional
Probab=72.33 E-value=5.8 Score=39.96 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=27.4
Q ss_pred CEEEEEcC---CCCc-cHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 11 VHAVCIPS---PFQS-HIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 11 ~~il~~~~---~~~G-H~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
|||++++. |-.| ==.-...|++.|.++||+|+++|+..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCC
Confidence 57888873 3222 11125699999999999999999753
No 151
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=72.29 E-value=6.1 Score=32.72 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=36.0
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 56 (465)
+||++.-.|+.+=.. ...+.+.|.++|++|+++.++.-.+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 488888888877777 999999999999999999887766555544
No 152
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=70.65 E-value=6.9 Score=38.88 Aligned_cols=113 Identities=13% Similarity=0.088 Sum_probs=66.7
Q ss_pred cCceEe-eccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhc---ccceeEEEEecCCCCCC
Q 012342 324 EKGFVA-SWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVC---NEWGVGMEINGDDEDVI 399 (465)
Q Consensus 324 ~~~~v~-~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~---~~~g~g~~~~~~~~~~~ 399 (465)
+++... ...+-.++|..+++ +||-- .+.+.|.+..+.|+|....-.|.....+.+. +...-|..+ -+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~------~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIV------YN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EE------SS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCcee------CC
Confidence 455543 44456789999999 99997 4478899999999998877666553332221 112223333 36
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 012342 400 RNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLV 448 (465)
Q Consensus 400 ~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 448 (465)
.++|.++|.+++.++. .++++-++..+++-. ..+|.++++.++.++
T Consensus 323 ~~eL~~~i~~~~~~~~--~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENPD--EYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHHH--HTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCCH--HHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 8999999999887653 356666666666643 345666766666554
No 153
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=70.53 E-value=7.7 Score=37.37 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=29.5
Q ss_pred CEEEEEcCC--------CCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 11 VHAVCIPSP--------FQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 11 ~~il~~~~~--------~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
|||++++.. .-|--.-...|++.|.++||+|++++...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 588887643 23444668899999999999999998754
No 154
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=70.48 E-value=23 Score=34.51 Aligned_cols=96 Identities=10% Similarity=0.054 Sum_probs=61.0
Q ss_pred CCceeEEeecccc----CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCce-Eeec--cCh-hh
Q 012342 265 PKSVIYVNFGSFI----FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGF-VASW--CPQ-EE 336 (465)
Q Consensus 265 ~~~~V~vs~GS~~----~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~--~p~-~~ 336 (465)
.++.|.+.-|+.. .++.+.+.++++.|.+.+.++++.-+..+. .....+.+..+.++. +.+- +.+ ..
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~-----~~~~~i~~~~~~~~~~l~g~~sL~el~a 247 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDH-----PAGNEIEALLPGELRNLAGETSLDEAVD 247 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhH-----HHHHHHHHhCCcccccCCCCCCHHHHHH
Confidence 3568888887742 467889999999987777776655332210 011222222223322 2332 334 45
Q ss_pred hhcCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 337 VLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 337 ~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
++.++++ ||+. -.|-++=|.+.|+|+|++
T Consensus 248 li~~a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 248 LIALAKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred HHHhCCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 8999998 8886 567788899999999975
No 155
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=70.44 E-value=51 Score=28.54 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=23.0
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecCC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWPF 370 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P~ 370 (465)
..+++++|.|-| .+.+|...++|+|++.-
T Consensus 63 ~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 345589998854 67799999999999963
No 156
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=69.90 E-value=1.1e+02 Score=29.97 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=61.6
Q ss_pred cCceE-eeccChh---hhhcCCCcceeeec--CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCC
Q 012342 324 EKGFV-ASWCPQE---EVLKHPSIGGFLTH--CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDED 397 (465)
Q Consensus 324 ~~~~v-~~~~p~~---~~l~~~~~~~~i~h--gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~ 397 (465)
+++.+ .+++|.. .+|..|+++-|++. =|.|++.-.|..|+|+++- .+-+.+-... + .|+-+-... +.
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~-~-~~ipVlf~~--d~ 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLK-E-QGIPVLFYG--DE 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHH-h-CCCeEEecc--cc
Confidence 46665 5788764 59999999777765 5899999999999999873 4445554443 3 477666655 78
Q ss_pred CCHHHHHHHHHHHhc
Q 012342 398 VIRNEVEKLVREMME 412 (465)
Q Consensus 398 ~~~~~l~~ai~~~l~ 412 (465)
++...|+++=+++..
T Consensus 318 L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 LDEALVREAQRQLAN 332 (360)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999888764
No 157
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=69.14 E-value=7.8 Score=38.48 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=27.7
Q ss_pred CEEEEEcCC-CCccH-HHHHHHHHHHHhCCCEEEEEeCC
Q 012342 11 VHAVCIPSP-FQSHI-KAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 11 ~~il~~~~~-~~GH~-~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
|||+++... ..|=. .-...||+.|+++||+|+++|..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 477777643 33433 44589999999999999999874
No 158
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=69.12 E-value=5.5 Score=34.02 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 20 FQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 20 ~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
.-|=-.-.+.|++.|+++||+|+++++..
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 55666778999999999999999998754
No 159
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=69.09 E-value=1e+02 Score=28.84 Aligned_cols=132 Identities=16% Similarity=0.235 Sum_probs=73.0
Q ss_pred eeEEeeccccC-CCHHHHHHHHHHHHhCCC--CEEEEEcCCCCCCCcCCCchhHHHHh--ccCceEeeccCh---hhhhc
Q 012342 268 VIYVNFGSFIF-MNKQQLIEVAMGLVNSNH--PFLWIIRPDLVTGETADLPAEFEVKA--KEKGFVASWCPQ---EEVLK 339 (465)
Q Consensus 268 ~V~vs~GS~~~-~~~~~~~~~~~al~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~p~---~~~l~ 339 (465)
.+++..|.... ...+.+.+.+..+..... .++++...... ...+.. ..... ..++...+++++ ..++.
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~-~~~~~~~~~~v~~~g~~~~~~~~~~~~ 275 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER---REELEK-LAKKLGLEDNVKFLGYVPDEELAELLA 275 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc---HHHHHH-HHHHhCCCCcEEEecccCHHHHHHHHH
Confidence 56677777543 344555555555554432 33433332210 000111 22222 256677888882 34677
Q ss_pred CCCcceeeec---CCchh-HHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 012342 340 HPSIGGFLTH---CGWNS-IVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 340 ~~~~~~~i~h---gG~~s-~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~ 414 (465)
.+++ ++.- .|.|. +.|++++|+|+|..... .....+ ...+.|. +. .....+++..++..++++.
T Consensus 276 ~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~-~~~~~g~-~~---~~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 276 SADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVV-EDGETGL-LV---PPGDVEELADALEQLLEDP 343 (381)
T ss_pred hCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHh-cCCCceE-ec---CCCCHHHHHHHHHHHhcCH
Confidence 6776 6655 35544 59999999999775553 222223 3322455 33 2226899999999998876
No 160
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=68.62 E-value=5.6 Score=38.72 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=28.3
Q ss_pred EEEEcC--CCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 13 AVCIPS--PFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 13 il~~~~--~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|+++.. ..-|+....+.|++.|.++||+|++++.
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~ 37 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISL 37 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEE
Confidence 455544 4588999999999999999999999975
No 161
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=67.93 E-value=21 Score=34.96 Aligned_cols=98 Identities=14% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCceeEEeecccc---CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhcc-Cce-Eeec--cCh-hh
Q 012342 265 PKSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE-KGF-VASW--CPQ-EE 336 (465)
Q Consensus 265 ~~~~V~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-v~~~--~p~-~~ 336 (465)
.++.|.+..|+.. .++.+.+.++++.|...+.++++..+.... +. .+...+.+..+. ++. +.+- +.+ ..
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~--e~-~~~~~i~~~~~~~~~~~l~g~~sL~el~a 256 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKD--EL-AMVNEIAQGCQTPRVTSLAGKLTLPQLAA 256 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHH--HH-HHHHHHHhhCCCCcccccCCCCCHHHHHH
Confidence 3457888888754 467889999999988778887766432210 00 011111111111 222 2333 334 45
Q ss_pred hhcCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 337 VLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 337 ~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
++.++++ ||+. -.|.++=|.+.|+|+|++
T Consensus 257 li~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 257 LIDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 9999998 9998 788899999999999986
No 162
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=67.25 E-value=14 Score=34.22 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=54.0
Q ss_pred CCceeEEeecccc---CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhcc----Cce-Eeecc--Ch
Q 012342 265 PKSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE----KGF-VASWC--PQ 334 (465)
Q Consensus 265 ~~~~V~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-v~~~~--p~ 334 (465)
+++.|.+..|+.. .++.+.+.++++.|.+.+.++++..+.... .....+.+.+ ++. +.+-. .+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-------EKEIADQIAAGLQNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-------HHHHHHHHHTTHTTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-------HHHHHHHHHHhcccceEeecCCCCHHH
Confidence 4568888888864 567889999999999888666555443210 0111112221 222 33322 33
Q ss_pred -hhhhcCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 335 -EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 335 -~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
..++.++++ +|+. ..|.++=|.+.|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 468889998 8886 567788899999999998
No 163
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=67.23 E-value=1.2e+02 Score=31.54 Aligned_cols=109 Identities=14% Similarity=0.117 Sum_probs=68.7
Q ss_pred eEeeccChhh---hhcCCCcceeee--cCCchhHH-HHHhcCC----cEEecCCCCChhhHHHhhcccceeEEEEecCCC
Q 012342 327 FVASWCPQEE---VLKHPSIGGFLT--HCGWNSIV-ESLCSGV----PMICWPFTGDQPTNGRYVCNEWGVGMEINGDDE 396 (465)
Q Consensus 327 ~v~~~~p~~~---~l~~~~~~~~i~--hgG~~s~~-eal~~Gv----P~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~ 396 (465)
++.+.+|+.+ ++..+++ ++|| .-|+|-+. |.++++. |+|.=-+.+ |. +.+.-++.+.
T Consensus 365 ~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllVN---- 431 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLTN---- 431 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEEC----
Confidence 4567788765 6667777 3343 34888554 9999877 544432221 11 2233466774
Q ss_pred CCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Q 012342 397 DVIRNEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 454 (465)
Q Consensus 397 ~~~~~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 454 (465)
-.+.++++++|.++|+.+.. +-++|.+++.+.+++ -.+..=.+.|++.+.+.
T Consensus 432 P~d~~~~A~ai~~AL~m~~~-Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 432 PYDPVRMDETIYVALAMPKA-EQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred CCCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 46899999999999988742 235566666666553 34555677788777654
No 164
>PRK00654 glgA glycogen synthase; Provisional
Probab=66.42 E-value=9.3 Score=39.38 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=27.6
Q ss_pred CEEEEEcC---C---CCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 11 VHAVCIPS---P---FQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 11 ~~il~~~~---~---~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
|||+++++ | .-|--.-.-.|++.|+++||+|+++++..
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y 44 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGY 44 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 47777764 2 22333445789999999999999999754
No 165
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=65.93 E-value=11 Score=30.85 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCc---cHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012342 11 VHAVCIPSPFQS---HIKAMLKLAKLLHHKGFHITFVNTEFN 49 (465)
Q Consensus 11 ~~il~~~~~~~G---H~~P~l~La~~L~~rGh~Vt~~t~~~~ 49 (465)
|||+|+--|-.+ .-.-.+.|..+-++|||+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 466676665444 234578899999999999999987543
No 166
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=65.22 E-value=78 Score=27.37 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=22.8
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecCC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWPF 370 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P~ 370 (465)
..+++++|+|-| .+.||...++|+|++.-
T Consensus 60 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 344589998855 66799999999999943
No 167
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=65.04 E-value=21 Score=28.75 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=35.4
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~ 53 (465)
.|+++.+.+..-|-.-...++..|.++||+|.++-.....+.+
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l 43 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEEL 43 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHH
Confidence 3789999999999999999999999999999998554433343
No 168
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=63.92 E-value=83 Score=27.10 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=21.9
Q ss_pred cceeeecCCch------hHHHHHhcCCcEEecCC
Q 012342 343 IGGFLTHCGWN------SIVESLCSGVPMICWPF 370 (465)
Q Consensus 343 ~~~~i~hgG~~------s~~eal~~GvP~i~~P~ 370 (465)
.++++++.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 44588887744 66789999999999964
No 169
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=63.66 E-value=34 Score=33.63 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=41.0
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhh
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~~ 56 (465)
||||++-..+.||+.=...+.+.|.++ +.+|++++.+.+.+.++..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM 48 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC
Confidence 489999999999999999999999996 9999999988877766554
No 170
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=63.47 E-value=42 Score=33.06 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=61.8
Q ss_pred CceeEEeecccc---CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhc-cCc-eEeec--cCh-hhh
Q 012342 266 KSVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK-EKG-FVASW--CPQ-EEV 337 (465)
Q Consensus 266 ~~~V~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~--~p~-~~~ 337 (465)
++.|.+..|+.. .++.+.+.++++.|.+.+.++++..+.++... .....+.+... .++ .+.+. +.+ ..+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~---~~~~~i~~~~~~~~~~~l~g~~sL~el~al 259 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDL---ACVNEIAQGCQTPPVTALAGKTTFPELGAL 259 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHH---HHHHHHHHhcCCCccccccCCCCHHHHHHH
Confidence 467888888863 56788999999999877888776644331100 00011111111 122 23343 334 458
Q ss_pred hcCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 338 LKHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 338 l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
+.++++ ||++ -.|-++=|.+.|+|+|++
T Consensus 260 i~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 260 IDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 999998 9987 567788889999999876
No 171
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=63.10 E-value=1.2e+02 Score=30.02 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=55.3
Q ss_pred cCCCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCcCCCchhHHH--HhccCceEeeccChhh---hhcCCCcceeeec
Q 012342 277 IFMNKQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFEV--KAKEKGFVASWCPQEE---VLKHPSIGGFLTH 349 (465)
Q Consensus 277 ~~~~~~~~~~~~~al~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~p~~~---~l~~~~~~~~i~h 349 (465)
.+...+.+.+++..+.+ ...+|++.-.++... .-++..+ .+.+++.+.+-+|+.+ +|...++ |++-
T Consensus 206 yrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i-----~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--Flnt 278 (426)
T KOG1111|consen 206 YRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRI-----DLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNT 278 (426)
T ss_pred eccchHHHHHHHHHHHhcCCCeeEEEecCCcccc-----hHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--Eecc
Confidence 34566788887777655 456766554333110 1122222 3467888899999854 8888888 8865
Q ss_pred CC----chhHHHHHhcCCcEEec
Q 012342 350 CG----WNSIVESLCSGVPMICW 368 (465)
Q Consensus 350 gG----~~s~~eal~~GvP~i~~ 368 (465)
.= .-++.||.++|.|++..
T Consensus 279 SlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 279 SLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEe
Confidence 32 23678999999999973
No 172
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=62.37 E-value=41 Score=32.60 Aligned_cols=133 Identities=11% Similarity=-0.033 Sum_probs=75.4
Q ss_pred ceeEEeecccc---CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeec--cCh-hhhhcC
Q 012342 267 SVIYVNFGSFI---FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASW--CPQ-EEVLKH 340 (465)
Q Consensus 267 ~~V~vs~GS~~---~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~p~-~~~l~~ 340 (465)
+.|.+..|+.. .++.+.+.++++.+.+.+.++++..|+.... ...+.+.+. ..++.+.+- +.+ ..++.+
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~----~~~~~i~~~-~~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEE----QRAKRLAEG-FPYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHH----HHHHHHHcc-CCcceecCCCCHHHHHHHHHh
Confidence 45544445432 4788899999999977788776554532100 011111111 122333332 344 458999
Q ss_pred CCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccc----eeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 341 PSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEW----GVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 341 ~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~----g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
+++ ||+. .-|.++=|...|+|+|++=--.|-..++-.- +.. -+.-.+ ..++.+++.++++++|+
T Consensus 254 a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~-~~~~~~~~~~~cm----~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 254 AKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYG-KNQHACRSPGKSM----ADLSAETVFQKLETLIS 321 (322)
T ss_pred CCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCC-CCceeecCCCccc----ccCCHHHHHHHHHHHhh
Confidence 998 9987 4678888999999999862222211111100 000 001112 67899999999988763
No 173
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=62.00 E-value=23 Score=33.42 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=33.5
Q ss_pred ceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCC
Q 012342 326 GFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPF 370 (465)
Q Consensus 326 ~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~ 370 (465)
+.+..-++-.++|.+++. +||-.+. +-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 334566777889999998 8887543 77899999999999765
No 174
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=61.14 E-value=17 Score=27.23 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
..++++..+...|..-+-.+|+.|++.|+.|..+=.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 467888889999999999999999999999987643
No 175
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=60.63 E-value=14 Score=38.06 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=27.5
Q ss_pred CEEEEEcCC------CCccHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012342 11 VHAVCIPSP------FQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (465)
Q Consensus 11 ~~il~~~~~------~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~ 49 (465)
|||+++++= .-|=-.-.-.|++.|+++||+|.++++.+.
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 477777742 122223346899999999999999997553
No 176
>PLN02470 acetolactate synthase
Probab=60.15 E-value=50 Score=35.20 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=52.9
Q ss_pred eeccccCCCH--HHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHh--ccCceEeec--------cChhhhhc
Q 012342 272 NFGSFIFMNK--QQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFVASW--------CPQEEVLK 339 (465)
Q Consensus 272 s~GS~~~~~~--~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~--------~p~~~~l~ 339 (465)
+|||....+. ..-..+++.|++.|.+.++-+.+... ..+.+.+ .+++..+.- .-.-.-..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~--------~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS--------MEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc--------HHHHHHHhccCCceEEEeccHHHHHHHHHHHHHH
Confidence 4666653332 23456888888888888888776532 1222222 112332211 11111222
Q ss_pred CCCcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 340 HPSIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 340 ~~~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
...++++++|.|-| .+.+|...++|+|++.
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 34566799999955 7789999999999995
No 177
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=60.12 E-value=17 Score=34.16 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=41.6
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 56 (465)
--++|+..|+.|-.+=..+||.+|.++|+.|+|++.+.....+..+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 4788999999999999999999999889999999999888887765
No 178
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=59.31 E-value=7 Score=33.61 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=27.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
||.++..|..|+ ++|..|+++||+|++++...
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 577888888886 78999999999999998764
No 179
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=59.00 E-value=35 Score=33.43 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=61.2
Q ss_pred CceeEEeec-cc---cCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeec--cCh-hhhh
Q 012342 266 KSVIYVNFG-SF---IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASW--CPQ-EEVL 338 (465)
Q Consensus 266 ~~~V~vs~G-S~---~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~p~-~~~l 338 (465)
++.|.++.| |. -.++.+.+.++++.+.+.+.++++..+..+ ....+.+.+..+..+.+.+- +.| ..++
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e-----~e~~~~i~~~~~~~~~l~~k~sL~e~~~li 249 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDE-----EERAEEIAKGLPNAVILAGKTSLEELAALI 249 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHH-----HHHHHHHHHhcCCccccCCCCCHHHHHHHH
Confidence 568999989 44 257889999999999999966655554321 00112222222222224443 334 3477
Q ss_pred cCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 339 KHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 339 ~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
.++++ ||+. -.|-++=|.+.|+|+|++
T Consensus 250 ~~a~l--~I~~-DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 250 AGADL--VIGN-DSGPMHLAAALGTPTIAL 276 (334)
T ss_pred hcCCE--EEcc-CChHHHHHHHcCCCEEEE
Confidence 78887 7765 567788888999999986
No 180
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=58.66 E-value=33 Score=37.69 Aligned_cols=111 Identities=11% Similarity=0.048 Sum_probs=66.1
Q ss_pred EeeccChhh---hhcCCCcceeeec---CCch-hHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCH
Q 012342 328 VASWCPQEE---VLKHPSIGGFLTH---CGWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR 400 (465)
Q Consensus 328 v~~~~p~~~---~l~~~~~~~~i~h---gG~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~ 400 (465)
+.+++++.+ ++..+++ |+.- -|+| ++.|++++|+|-.++|+..+--.-+..+ .-|+.+.. .+.
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P----~d~ 415 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP----NDI 415 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC----CCH
Confidence 346778764 7778888 6643 3544 7789999977532222222211112222 22666643 579
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Q 012342 401 NEVEKLVREMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 454 (465)
Q Consensus 401 ~~l~~ai~~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 454 (465)
+++.++|.++|..+.. +.+++.+++.+.++ .-+...-++.|++.+.+.
T Consensus 416 ~~la~ai~~~l~~~~~-e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 416 EGIAAAIKRALEMPEE-EQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 9999999999986531 23444444444443 245667777777777665
No 181
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=58.43 E-value=16 Score=30.78 Aligned_cols=86 Identities=13% Similarity=0.163 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHH-HHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCcc
Q 012342 9 SKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR-LLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTA 87 (465)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~-~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~ 87 (465)
.+++|++.+.+..||=.-.--+++.|++.|++|.....-..-+. +.++.+ ..+..+.+.. +...
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~-------~dv~vIgvSs-l~g~------- 75 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVE-------EDVDVIGVSS-LDGG------- 75 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHh-------cCCCEEEEEe-ccch-------
Confidence 38999999999999999999999999999999987654332222 222211 1233333321 1111
Q ss_pred cCCCCCCccCchHHHHHHHcCCCeEEE
Q 012342 88 QDAYSLDGFLPFTITAAQQLGLPIVLF 114 (465)
Q Consensus 88 ~~~~~~D~~~~~~~~vA~~lgiP~v~~ 114 (465)
+..+++-.....++.|+..+.+
T Consensus 76 -----h~~l~~~lve~lre~G~~~i~v 97 (143)
T COG2185 76 -----HLTLVPGLVEALREAGVEDILV 97 (143)
T ss_pred -----HHHHHHHHHHHHHHhCCcceEE
Confidence 3334556677888888887764
No 182
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=58.25 E-value=99 Score=26.08 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=21.6
Q ss_pred cceeeecCCc------hhHHHHHhcCCcEEecCC
Q 012342 343 IGGFLTHCGW------NSIVESLCSGVPMICWPF 370 (465)
Q Consensus 343 ~~~~i~hgG~------~s~~eal~~GvP~i~~P~ 370 (465)
.+++++|.|- +.+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3348888764 467788999999999964
No 183
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=56.91 E-value=30 Score=31.12 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=36.5
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~ 53 (465)
+.+|++.+.++..|-....=++..|...|++|+..-..-..+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 67999999999999999999999999999999876543333333
No 184
>PLN02316 synthase/transferase
Probab=56.49 E-value=10 Score=42.83 Aligned_cols=41 Identities=12% Similarity=0.309 Sum_probs=30.5
Q ss_pred CCCEEEEEcC---C--CCccHHH-HHHHHHHHHhCCCEEEEEeCCcc
Q 012342 9 SKVHAVCIPS---P--FQSHIKA-MLKLAKLLHHKGFHITFVNTEFN 49 (465)
Q Consensus 9 ~~~~il~~~~---~--~~GH~~P-~l~La~~L~~rGh~Vt~~t~~~~ 49 (465)
+.|||+++++ | -.|=+.- .-.|++.|+++||+|.++++.+.
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 4699999874 2 1333333 36899999999999999998654
No 185
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=51.94 E-value=14 Score=29.87 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012342 24 IKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (465)
Q Consensus 24 ~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~ 54 (465)
+.|++.+.-.+.-|||++|++.|..+...+.
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhcccc
Confidence 6788899999999999999999988886544
No 186
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=51.04 E-value=30 Score=31.00 Aligned_cols=42 Identities=7% Similarity=-0.079 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~ 51 (465)
..+|++--.|+.|=..-...+.+.|.++||+|+++.++.-.+
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 458888777776665557899999999999999998866443
No 187
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=50.46 E-value=1.9e+02 Score=25.97 Aligned_cols=144 Identities=11% Similarity=0.067 Sum_probs=78.7
Q ss_pred CceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhcc-CceEeeccChhhhhcCCCcc
Q 012342 266 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE-KGFVASWCPQEEVLKHPSIG 344 (465)
Q Consensus 266 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~p~~~~l~~~~~~ 344 (465)
+.++.|+-|.+. ...++.|...|..+.++.. . +.+.+.+.... ++.......+...+..+++
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~--------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl- 73 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E--------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL- 73 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C--------CCHHHHHHHhCCCEEEEecCCChhhcCCceE-
Confidence 468888776654 3345566667776665532 2 23333332222 3334444444566777787
Q ss_pred eeeecCCchhHHHHHh----cCCcEEecCCCCChhhHHH-----hhcccceeEEEEecCC-CCCCHHHHHHHHHHHhcCC
Q 012342 345 GFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGR-----YVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 345 ~~i~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~-----~~~~~~g~g~~~~~~~-~~~~~~~l~~ai~~~l~~~ 414 (465)
+|.--+--.+.+.++ .++++-+ .|.+..+. .+ ++-++-+.+.++. .-.-...|++.|.+++. +
T Consensus 74 -ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~-~ 146 (202)
T PRK06718 74 -VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTDGASPKLAKKIRDELEALYD-E 146 (202)
T ss_pred -EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECCCCChHHHHHHHHHHHHHcc-h
Confidence 888777666666654 4554433 34433332 33 4334444554421 12234567777777763 3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012342 415 KGKQMRNKAMEWKGLAEEA 433 (465)
Q Consensus 415 ~~~~~~~~a~~l~~~~~~~ 433 (465)
+-..+-+...++++++++.
T Consensus 147 ~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 147 SYESYIDFLYECRQKIKEL 165 (202)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3335777777777777754
No 188
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=49.46 E-value=86 Score=33.42 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=39.8
Q ss_pred CcceeeecCCc------hhHHHHHhcCCcEEecCC-------------CCChhhHHHhhcccceeEEEEecCCCCCCHHH
Q 012342 342 SIGGFLTHCGW------NSIVESLCSGVPMICWPF-------------TGDQPTNGRYVCNEWGVGMEINGDDEDVIRNE 402 (465)
Q Consensus 342 ~~~~~i~hgG~------~s~~eal~~GvP~i~~P~-------------~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~ 402 (465)
..+++++|.|- +.+.+|...++|+|++.- ..||....+.+ . +....+.. ..--.+.
T Consensus 63 ~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~-t--k~s~~v~~--~~~i~~~ 137 (586)
T PRK06276 63 KVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPI-T--KHNFQIKK--PEEIPEI 137 (586)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhh-c--ceEEecCC--HHHHHHH
Confidence 34559999884 478899999999999842 12555555554 2 22334432 1222455
Q ss_pred HHHHHHHHhcC
Q 012342 403 VEKLVREMMEG 413 (465)
Q Consensus 403 l~~ai~~~l~~ 413 (465)
|.+|++..++.
T Consensus 138 i~~A~~~A~~~ 148 (586)
T PRK06276 138 FRAAFEIAKTG 148 (586)
T ss_pred HHHHHHHhcCC
Confidence 66666665544
No 189
>PRK14099 glycogen synthase; Provisional
Probab=48.98 E-value=31 Score=35.79 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=29.2
Q ss_pred CCEEEEEcC--------CCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 10 KVHAVCIPS--------PFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 10 ~~~il~~~~--------~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
+|||++++. |+.|++ .-.|.+.|+++||+|.+++|.+
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADV--AGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHCCCcEEEEeCCC
Confidence 789999864 344444 5678899999999999999855
No 190
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=48.84 E-value=25 Score=31.16 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=24.9
Q ss_pred CCccHHHHHHHHHHHHhCCCEEEEEe
Q 012342 20 FQSHIKAMLKLAKLLHHKGFHITFVN 45 (465)
Q Consensus 20 ~~GH~~P~l~La~~L~~rGh~Vt~~t 45 (465)
..|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 67999999999999999999999998
No 191
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=48.79 E-value=78 Score=33.60 Aligned_cols=28 Identities=11% Similarity=0.415 Sum_probs=22.6
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 78 ~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 345599998855 5789999999999984
No 192
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=48.74 E-value=47 Score=29.79 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~ 55 (465)
+.+|++.+.++..|-....-++..|..+|++|++.-..-..+.+.+
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 6799999999999999999999999999999998866544444433
No 193
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=48.43 E-value=39 Score=32.73 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
+|+|+++-.|+.|= .+|..|++.||+|+++.-..
T Consensus 5 ~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC
Confidence 78999999999884 56788999999999998654
No 194
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.36 E-value=48 Score=27.02 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=34.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~ 52 (465)
||++.+.++..|-.-..-++..|...|++|...-..-..+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~ 41 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEE 41 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 58999999999999999999999999999999876443333
No 195
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=47.26 E-value=42 Score=32.00 Aligned_cols=75 Identities=11% Similarity=0.217 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHH
Q 012342 278 FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVE 357 (465)
Q Consensus 278 ~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~e 357 (465)
..+.+..+++.+|+.....+.||.++++.. -..+.++++...+-.++.. ||-..-..+++-
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-----------------a~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~ 105 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYG-----------------ANRLLPYLDYDLIRANPKI--FVGYSDITALHL 105 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCC-----------------HHHhhhhCCHHHHhhCCeE--EEEecHHHHHHH
Confidence 345677888999999999999999987642 1234555566666666666 777776666666
Q ss_pred HHhc--CCcEEecCCC
Q 012342 358 SLCS--GVPMICWPFT 371 (465)
Q Consensus 358 al~~--GvP~i~~P~~ 371 (465)
+++. |++.+-=|+.
T Consensus 106 ~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 106 ALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHhcCceEEECccc
Confidence 6643 6777666654
No 196
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=47.22 E-value=20 Score=31.83 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCEEEEEeCCc
Q 012342 28 LKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 28 l~La~~L~~rGh~Vt~~t~~~ 48 (465)
..||+++..+|++||+++++.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 578999999999999999864
No 197
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=46.98 E-value=32 Score=33.79 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=60.5
Q ss_pred CCceeEEeecccc----CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhcc----Cc-eEeec--cC
Q 012342 265 PKSVIYVNFGSFI----FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE----KG-FVASW--CP 333 (465)
Q Consensus 265 ~~~~V~vs~GS~~----~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~v~~~--~p 333 (465)
+++.|.+..|+.. .++.+.+.++++.|...+.++++.-+..+. . ....+.+..+. ++ -+.+- +.
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~-~----~~~~i~~~~~~~~~~~~~~l~g~~sL~ 253 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDH-E----AGNEILAALNTEQQAWCRNLAGETQLE 253 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhH-H----HHHHHHHhcccccccceeeccCCCCHH
Confidence 4568888888742 467889999999987667776655332210 0 11112111211 11 22333 23
Q ss_pred h-hhhhcCCCcceeeecCCchhHHHHHhcCCcEEec
Q 012342 334 Q-EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICW 368 (465)
Q Consensus 334 ~-~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~ 368 (465)
+ ..++.++++ ||+. -.|-++=|.+.|+|+|++
T Consensus 254 el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 254 QAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 4 358999998 8876 677888999999999875
No 198
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=46.79 E-value=33 Score=30.75 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~ 51 (465)
|+||+.-==+. +---+..|++.|.+.||+|+++.|.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 35555543322 33446789999977889999999977653
No 199
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=46.78 E-value=39 Score=29.14 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=28.4
Q ss_pred eeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012342 268 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIR 303 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~ 303 (465)
.+|+++||........++..+.+|.+.+.--++..+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~S 38 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAVS 38 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 699999999877778889999999887764444443
No 200
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=46.07 E-value=1.9e+02 Score=24.71 Aligned_cols=138 Identities=15% Similarity=0.142 Sum_probs=67.7
Q ss_pred eeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceee
Q 012342 268 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFL 347 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i 347 (465)
.|-|-+||.. +....+++...|++.|..+-+.+-+... .|+.+.+-+ .-+.+...+.||
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saHR------~p~~l~~~~-------------~~~~~~~~~viI 60 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAHR------TPERLLEFV-------------KEYEARGADVII 60 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TTT------SHHHHHHHH-------------HHTTTTTESEEE
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEeccC------CHHHHHHHH-------------HHhccCCCEEEE
Confidence 5666677765 5677888888888888776555544321 233322111 111111223388
Q ss_pred ecCCch----hHHHHHhcCCcEEecCCCCChhh----HHHhhcc-cceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHH
Q 012342 348 THCGWN----SIVESLCSGVPMICWPFTGDQPT----NGRYVCN-EWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQ 418 (465)
Q Consensus 348 ~hgG~~----s~~eal~~GvP~i~~P~~~DQ~~----na~~~~~-~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~ 418 (465)
.=+|.. ++..++. -.|+|.+|....+.. ....+ + --|+++..-..++..++..+...|-. +.|++
T Consensus 61 a~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~v-qMp~g~pvatv~i~~~~nAA~~A~~ILa-~~d~~--- 134 (150)
T PF00731_consen 61 AVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIV-QMPSGVPVATVGINNGFNAALLAARILA-LKDPE--- 134 (150)
T ss_dssp EEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHH-T--TTS--EE-SSTHHHHHHHHHHHHHH-TT-HH---
T ss_pred EECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHH-hccCCCCceEEEccCchHHHHHHHHHHh-cCCHH---
Confidence 877754 3333433 799999999776442 22222 2 12554332110011233333333322 24555
Q ss_pred HHHHHHHHHHHHHH
Q 012342 419 MRNKAMEWKGLAEE 432 (465)
Q Consensus 419 ~~~~a~~l~~~~~~ 432 (465)
++++.++.++++++
T Consensus 135 l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 135 LREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 78888877777664
No 201
>PRK08322 acetolactate synthase; Reviewed
Probab=45.29 E-value=1e+02 Score=32.42 Aligned_cols=67 Identities=19% Similarity=0.115 Sum_probs=39.9
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecCC----C---------CChhhHHHhhcccceeEEEEecCCCCCCHHH
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWPF----T---------GDQPTNGRYVCNEWGVGMEINGDDEDVIRNE 402 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P~----~---------~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~ 402 (465)
..+++++|.|-| .+.+|...++|+|++.- . .||....+-+ . +...++.. ..--.+.
T Consensus 63 ~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~-t--k~~~~v~~--~~~~~~~ 137 (547)
T PRK08322 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPL-T--KWTRQIVS--PDNIPEV 137 (547)
T ss_pred CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhh-e--eEEEEeCC--HHHHHHH
Confidence 345599998844 78899999999999842 1 1555545544 2 22333432 2223455
Q ss_pred HHHHHHHHhcC
Q 012342 403 VEKLVREMMEG 413 (465)
Q Consensus 403 l~~ai~~~l~~ 413 (465)
|.+|++..++.
T Consensus 138 i~~A~~~A~~~ 148 (547)
T PRK08322 138 VREAFRLAEEE 148 (547)
T ss_pred HHHHHHHHccC
Confidence 66666666554
No 202
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=44.83 E-value=57 Score=30.99 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=14.6
Q ss_pred hHHHHHHHcCCCeEEEcCC
Q 012342 99 FTITAAQQLGLPIVLFFTI 117 (465)
Q Consensus 99 ~~~~vA~~lgiP~v~~~~~ 117 (465)
....+|+.+|+|+++...+
T Consensus 202 ~lA~~Ak~~~vPfyV~a~~ 220 (275)
T PRK08335 202 LLALACHDNGVPFYVAAET 220 (275)
T ss_pred HHHHHHHHcCCCEEEECcc
Confidence 3456789999999987554
No 203
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=44.28 E-value=33 Score=33.16 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=26.1
Q ss_pred CCccHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012342 20 FQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (465)
Q Consensus 20 ~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~ 49 (465)
.-|.-.-...|++.|.+.||+|++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 567888889999999999999999987554
No 204
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=44.07 E-value=32 Score=30.56 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=33.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~ 50 (465)
||++.-.|+.|=+.-.+.+.+.|.+.|++|+++.++.-.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 677777788888888889999999999999998886544
No 205
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=43.93 E-value=41 Score=32.21 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=26.5
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|||+++..|+.|- .+|..|++.||+|+++..
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHHCCCceEEEec
Confidence 5899998888874 578889999999999976
No 206
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=43.58 E-value=33 Score=32.80 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|+|+++..|+.| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 478888888777 4678889999999999986
No 207
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=43.23 E-value=1.1e+02 Score=31.44 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~ 50 (465)
.+||+++..+-.| +.+++.|.++|++|++.=...+.
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 6799999999999 99999999999999998755444
No 208
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=42.72 E-value=1.6e+02 Score=28.17 Aligned_cols=84 Identities=13% Similarity=0.013 Sum_probs=48.0
Q ss_pred hhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccC
Q 012342 254 TECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCP 333 (465)
Q Consensus 254 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p 333 (465)
.++.+......-+++-.-........+.+.+..+.+++++.|.++++-+|..... .++ +.. ...|
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~-------~~~------~~~--~~~p 180 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGG-------AGL------EKG--HSDP 180 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCC-------ccc------ccC--CCCc
Confidence 4566665543322222223333334455668899999999999999987754211 000 000 1122
Q ss_pred ---hhhhhcCCCcceeeecCCc
Q 012342 334 ---QEEVLKHPSIGGFLTHCGW 352 (465)
Q Consensus 334 ---~~~~l~~~~~~~~i~hgG~ 352 (465)
..-....|+++.++.|+|.
T Consensus 181 ~~~~~va~~fP~l~IVl~H~G~ 202 (293)
T COG2159 181 LYLDDVARKFPELKIVLGHMGE 202 (293)
T ss_pred hHHHHHHHHCCCCcEEEEecCC
Confidence 2224457789999999993
No 209
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=42.27 E-value=37 Score=33.65 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=54.4
Q ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCc-CCC-----chhHHHHhccC--ceEeeccChh---hhhcCCCcce
Q 012342 277 IFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGET-ADL-----PAEFEVKAKEK--GFVASWCPQE---EVLKHPSIGG 345 (465)
Q Consensus 277 ~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~-~~~-----~~~~~~~~~~~--~~v~~~~p~~---~~l~~~~~~~ 345 (465)
+......+..++++++..+.++.+.+..+.....- ..+ ..+-. ...++ +.+.+|+||. .+|-.|++
T Consensus 190 F~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~-~~~g~l~l~~lPF~~Q~~yD~LLw~cD~-- 266 (374)
T PF10093_consen 190 FCYENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDS-WQRGNLTLHVLPFVPQDDYDRLLWACDF-- 266 (374)
T ss_pred EeCCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccc-cccCCeEEEECCCCCHHHHHHHHHhCcc--
Confidence 33455668888888888888777766654321110 000 00000 01233 3457999985 49999988
Q ss_pred eeecCCchhHHHHHhcCCcEEe
Q 012342 346 FLTHCGWNSIVESLCSGVPMIC 367 (465)
Q Consensus 346 ~i~hgG~~s~~eal~~GvP~i~ 367 (465)
-+-. |=-|..-|..+|+|.|=
T Consensus 267 NfVR-GEDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 267 NFVR-GEDSFVRAQWAGKPFVW 287 (374)
T ss_pred ceEe-cchHHHHHHHhCCCceE
Confidence 4444 66799999999999984
No 210
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=41.92 E-value=2.5e+02 Score=28.57 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=39.8
Q ss_pred cceeeecCCch------hHHHHHhcCCcEEecCC-------------CCChhhHHHhhcccceeEEEEecCCCCC-----
Q 012342 343 IGGFLTHCGWN------SIVESLCSGVPMICWPF-------------TGDQPTNGRYVCNEWGVGMEINGDDEDV----- 398 (465)
Q Consensus 343 ~~~~i~hgG~~------s~~eal~~GvP~i~~P~-------------~~DQ~~na~~~~~~~g~g~~~~~~~~~~----- 398 (465)
.+++++|.|-| .+.+|...++|+|++-- ..||....+-+ . +....+.. ..-
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~-t--k~~~~v~~--~~~~~~~~ 138 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRGCGANQTIDQPGLFGSY-V--RWSLDLPL--PEADEPLA 138 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhCCCCCcccchhhHHhhc-c--ceeeeCCC--CCccccHH
Confidence 45599998854 67799999999999922 22454444444 2 22334432 111
Q ss_pred -CHHHHHHHHHHHhc
Q 012342 399 -IRNEVEKLVREMME 412 (465)
Q Consensus 399 -~~~~l~~ai~~~l~ 412 (465)
-.+.|.++++..+.
T Consensus 139 ~~~~~i~~A~~~a~~ 153 (432)
T TIGR00173 139 YLRSTVDRAVAQAQG 153 (432)
T ss_pred HHHHHHHHHHHHhhC
Confidence 23678888887765
No 211
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=41.86 E-value=1.4e+02 Score=31.73 Aligned_cols=28 Identities=11% Similarity=0.250 Sum_probs=22.7
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
+.+++++|.|-| .+.+|...++|+|++.
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 345599998844 6778999999999995
No 212
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=41.78 E-value=70 Score=29.12 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~ 53 (465)
+.+|++.+.++..|-....=++..|..+|++|+..-..-..+.+
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 68999999999999999999999999999999998654433333
No 213
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=41.18 E-value=1.8e+02 Score=27.83 Aligned_cols=57 Identities=18% Similarity=0.312 Sum_probs=38.9
Q ss_pred hhcCCCcceeeecCCchhHHHHHhc----CCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 337 VLKHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 337 ~l~~~~~~~~i~hgG~~s~~eal~~----GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
+-..+++ +|+-||=||+++++.. ++|++++-. -.+|. + -..+.+++.++|.++++
T Consensus 60 ~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~------------G~lGF---L----~~~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 60 IGARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH------------GRLGF---I----TDIPLDDMQETLPPMLA 118 (291)
T ss_pred hccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC------------CCccc---c----ccCCHHHHHHHHHHHHc
Confidence 3335677 9999999999999763 678877542 11121 2 23567888888888876
Q ss_pred CC
Q 012342 413 GE 414 (465)
Q Consensus 413 ~~ 414 (465)
++
T Consensus 119 g~ 120 (291)
T PRK02155 119 GN 120 (291)
T ss_pred CC
Confidence 54
No 214
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=40.97 E-value=1.4e+02 Score=31.47 Aligned_cols=28 Identities=21% Similarity=0.474 Sum_probs=22.8
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+++|...++|+|++-
T Consensus 64 ~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 64 KVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 345599998844 7789999999999994
No 215
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=40.85 E-value=45 Score=32.33 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=39.8
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHh
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~ 55 (465)
|||+++-....||+.=...+.+.|.+. +.+|||++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 589999999999999999999999997 999999998877665543
No 216
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=40.78 E-value=27 Score=35.86 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=25.7
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
+||+|+.-|--| |.-|.+|+++||+||++=..
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEecc
Confidence 477777766544 88899999999999999653
No 217
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=40.39 E-value=60 Score=31.43 Aligned_cols=75 Identities=11% Similarity=0.078 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHH
Q 012342 278 FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVE 357 (465)
Q Consensus 278 ~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~e 357 (465)
..+.+..+++.+++.....+.||.+.++.. -..+.++++...+-.||.+ ||-..-..+++-
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g-----------------~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~ 109 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGDD-----------------SNELLPYLDYELIKKNPKI--FIGYSDITALHL 109 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcccC-----------------HhhhhhhcCHHHHhhCCCE--EEeccHHHHHHH
Confidence 345667888999999999999999987632 1234555555556666655 666666666666
Q ss_pred HHh--cCCcEEecCCC
Q 012342 358 SLC--SGVPMICWPFT 371 (465)
Q Consensus 358 al~--~GvP~i~~P~~ 371 (465)
+++ +|++.+--|+.
T Consensus 110 al~~~~g~~t~hGp~~ 125 (308)
T cd07062 110 AIYKKTGLVTYYGPNL 125 (308)
T ss_pred HHHHhcCCeEEECccc
Confidence 663 36666555653
No 218
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=40.30 E-value=70 Score=29.96 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=15.1
Q ss_pred HHHHHHHhCCCEEEEEeCC
Q 012342 29 KLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 29 ~La~~L~~rGh~Vt~~t~~ 47 (465)
.+|+.|++.|.+||+++..
T Consensus 125 ~~a~~L~~~GI~vtli~Ds 143 (253)
T PRK06372 125 DMAKLLVKSGIDVVLLTDA 143 (253)
T ss_pred HHHHHHHHCCCCEEEEehh
Confidence 6888888888888887643
No 219
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.13 E-value=1.1e+02 Score=26.47 Aligned_cols=95 Identities=16% Similarity=0.244 Sum_probs=63.2
Q ss_pred Chhh-hhcCCCcceeeecCC---chhHHHHHhcCCcEEecCCCC--ChhhHHHhhcccceeEEEEecCCCCCCHHHHHHH
Q 012342 333 PQEE-VLKHPSIGGFLTHCG---WNSIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKL 406 (465)
Q Consensus 333 p~~~-~l~~~~~~~~i~hgG---~~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~a 406 (465)
+|.. |-.||++++-+--.| .-|+.|--.+|.=-+. |.-. =+..|+++. +++|.-..+.- +..++++|..+
T Consensus 64 ~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~-~rFgfPfI~aV--kg~~k~~Il~a 139 (176)
T COG3195 64 ERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLS-PEEFARFTELNAAYV-ERFGFPFIIAV--KGNTKDTILAA 139 (176)
T ss_pred HHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCC-HHHHHHHHHHHHHHH-HhcCCceEEee--cCCCHHHHHHH
Confidence 3544 344777743333333 4577888888875543 2211 245699998 89999766655 67789999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHH
Q 012342 407 VREMMEGEKGKQMRNKAMEWKGLAE 431 (465)
Q Consensus 407 i~~~l~~~~~~~~~~~a~~l~~~~~ 431 (465)
..+=|+|....+++....++.+..+
T Consensus 140 ~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 140 FERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHH
Confidence 9999988765567777766665544
No 220
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=39.73 E-value=43 Score=32.93 Aligned_cols=46 Identities=11% Similarity=0.015 Sum_probs=41.2
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHh
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~ 55 (465)
.++||++-....||+.=...+.+.|.++ +.+|++++.+.+.+.++.
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 52 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE 52 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc
Confidence 5799999999999999999999999997 899999999887766644
No 221
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=39.58 E-value=37 Score=31.29 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=22.4
Q ss_pred eeEEeeccccCCCHH-HHHHHHHHHHhCCCCEEEE
Q 012342 268 VIYVNFGSFIFMNKQ-QLIEVAMGLVNSNHPFLWI 301 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~-~~~~~~~al~~~~~~~l~~ 301 (465)
.+.|+|.-......+ .++...+.|.+.+..+|++
T Consensus 152 ~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vva 186 (229)
T PRK06732 152 ITLVGFKLLVNVSKEELIKVARASLIKNQADYILA 186 (229)
T ss_pred cEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 577888776654444 4444666677788887755
No 222
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=39.22 E-value=2.4e+02 Score=29.90 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhc--cCceEee--------ccChhhhhcCCCcceeeecCCch
Q 012342 284 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK--EKGFVAS--------WCPQEEVLKHPSIGGFLTHCGWN 353 (465)
Q Consensus 284 ~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~--------~~p~~~~l~~~~~~~~i~hgG~~ 353 (465)
-..+++.|++.|.+.++-+.+... ..+.+.+. +++..+. +.-.-.-......+++++|.|-|
T Consensus 16 ~~~l~~~L~~~GV~~vFgvpG~~~--------~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG 87 (564)
T PRK08155 16 AELIVRLLERQGIRIVTGIPGGAI--------LPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPG 87 (564)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccc--------HHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCc
Confidence 455777777777777777665432 11222221 1222211 11111111122344588888744
Q ss_pred ------hHHHHHhcCCcEEecC
Q 012342 354 ------SIVESLCSGVPMICWP 369 (465)
Q Consensus 354 ------s~~eal~~GvP~i~~P 369 (465)
.+.+|...++|+|++.
T Consensus 88 ~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 88 ATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHHHHHHHhcCCCEEEEe
Confidence 7889999999999985
No 223
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=38.83 E-value=1.2e+02 Score=32.30 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=22.3
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 68 ~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 68 VPGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 344588888844 6789999999999995
No 224
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=38.70 E-value=67 Score=31.01 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=14.7
Q ss_pred hHHHHHHHcCCCeEEEcCC
Q 012342 99 FTITAAQQLGLPIVLFFTI 117 (465)
Q Consensus 99 ~~~~vA~~lgiP~v~~~~~ 117 (465)
....+|+.+++|+++...+
T Consensus 208 ~lA~~Ak~~~vPv~V~a~~ 226 (301)
T TIGR00511 208 QLALAAREARVPFMVAAET 226 (301)
T ss_pred HHHHHHHHhCCCEEEEccc
Confidence 3456789999999987654
No 225
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=38.55 E-value=3.6e+02 Score=25.74 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCCcc----HHHHHHHHHHHHhCCCEEEEEeC
Q 012342 10 KVHAVCIPSPFQSH----IKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 10 ~~~il~~~~~~~GH----~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|+||+++.-|...- +.---.+++.|.+.||+|.++..
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 77998888553331 45566788999999999988854
No 226
>PRK14098 glycogen synthase; Provisional
Probab=38.11 E-value=59 Score=33.78 Aligned_cols=38 Identities=11% Similarity=0.328 Sum_probs=29.2
Q ss_pred CCCEEEEEcC--------CCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 9 SKVHAVCIPS--------PFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 9 ~~~~il~~~~--------~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
+.|||++++. |+.|++ .-.|.+.|+++||+|.+++|.+
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADF--MASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHH--HHHHHHHHHHCCCeEEEEcCCC
Confidence 3589998863 344444 5678899999999999999854
No 227
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=38.09 E-value=48 Score=29.31 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=32.9
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~ 52 (465)
.||++.-.|+.|=+. ...+.+.|.++|++|.++.++.-.+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~f 42 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKF 42 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHH
Confidence 378888878777666 79999999999999999988664433
No 228
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=38.03 E-value=27 Score=32.53 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCc
Q 012342 26 AMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 26 P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
-.-.|++.|+++||+|++++|..
T Consensus 21 v~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHhcCCeEEEEEccc
Confidence 35678999999999999999855
No 229
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=38.00 E-value=94 Score=23.60 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012342 27 MLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 27 ~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 56 (465)
++.+++.|.+.|+++ ++ ++...+.++..
T Consensus 2 ~~~~~~~l~~lG~~i-~A-T~gTa~~L~~~ 29 (90)
T smart00851 2 LVELAKRLAELGFEL-VA-TGGTAKFLREA 29 (90)
T ss_pred HHHHHHHHHHCCCEE-EE-ccHHHHHHHHC
Confidence 468899999999998 34 44555566554
No 230
>PRK05920 aromatic acid decarboxylase; Validated
Probab=37.97 E-value=63 Score=29.19 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=34.4
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~ 54 (465)
..||++--.|+.+= +=.+.+.+.|.+.||+|+++.++.-.+.+.
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 45787777676665 688899999999999999999876555443
No 231
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=37.72 E-value=45 Score=31.84 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
++|.|+-.|.+| ..+|+.|.++||+|+++.-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 378888888888 47899999999999999753
No 232
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=37.70 E-value=33 Score=35.30 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=40.2
Q ss_pred hHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHH
Q 012342 354 SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKGKQMRNKAME 425 (465)
Q Consensus 354 s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~~~~~~~a~~ 425 (465)
++.||+++|+|++..=- ..=+.-+ +..-.|.-+.. +.-....+..++.++..|++ ++.+..+
T Consensus 381 v~IEAMa~glPvvAt~~----GGP~EiV-~~~~tG~l~dp--~~e~~~~~a~~~~kl~~~p~---l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNN----GGPAEIV-VHGVTGLLIDP--GQEAVAELADALLKLRRDPE---LWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEecC----CCceEEE-EcCCcceeeCC--chHHHHHHHHHHHHHhcCHH---HHHHHHH
Confidence 78999999999998533 2223333 44445666643 22222379999999999987 5554443
No 233
>PLN02929 NADH kinase
Probab=37.48 E-value=1.8e+02 Score=28.05 Aligned_cols=99 Identities=9% Similarity=0.185 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHH
Q 012342 279 MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVES 358 (465)
Q Consensus 279 ~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~ea 358 (465)
...+.+..+.+-|++.|..+..+.+.+ + ......+++ +|+-||=||++.+
T Consensus 31 ~h~~~~~~~~~~L~~~gi~~~~v~r~~--------~--------------------~~~~~~~Dl--vi~lGGDGT~L~a 80 (301)
T PLN02929 31 VHKDTVNFCKDILQQKSVDWECVLRNE--------L--------------------SQPIRDVDL--VVAVGGDGTLLQA 80 (301)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEeeccc--------c--------------------ccccCCCCE--EEEECCcHHHHHH
Confidence 345666777788888887763332211 0 111234566 9999999999998
Q ss_pred Hh---cCCcEEecCCCC------ChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 012342 359 LC---SGVPMICWPFTG------DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 359 l~---~GvP~i~~P~~~------DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~ 414 (465)
.+ .++|+|++-..- .+++|.-. +..-.|. + -.++.+++.++|.+++++.
T Consensus 81 a~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGf-L----~~~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 81 SHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGH-L----CAATAEDFEQVLDDVLFGR 138 (301)
T ss_pred HHHcCCCCcEEEEECCCcccccccccccccc--cccCccc-c----ccCCHHHHHHHHHHHHcCC
Confidence 54 478999887642 12233321 1112332 2 2357899999999999764
No 234
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=37.21 E-value=58 Score=31.83 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
.+||.|+..|..|- .+|..|+++||+|+++...
T Consensus 2 ~mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecH
Confidence 46899999998884 5788999999999999753
No 235
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=37.20 E-value=1e+02 Score=26.54 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=54.9
Q ss_pred hhhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeec-
Q 012342 253 ETECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASW- 331 (465)
Q Consensus 253 ~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 331 (465)
..++-+||.+.. ...++ |.. ......+.++..+.+-.++=++..... .. +.......+.++
T Consensus 20 A~~lg~~La~~g---~~lv~-Gg~----~GlM~a~a~ga~~~gg~viGVlp~~l~-------~~---~~~~~~~i~~~~~ 81 (159)
T TIGR00725 20 AYRLGKELAKKG---HILIN-GGR----TGVMEAVSKGAREAGGLVVGILPDEDF-------AG---NPYLTIKVKTGMN 81 (159)
T ss_pred HHHHHHHHHHCC---CEEEc-CCc----hhHHHHHHHHHHHCCCeEEEECChhhc-------cC---CCCceEEEECCCc
Confidence 445667776643 55665 432 234555666666666666555432210 00 000111122343
Q ss_pred cChhhhhcCCCcceeeecCCchhHHH---HHhcCCcEEecCC
Q 012342 332 CPQEEVLKHPSIGGFLTHCGWNSIVE---SLCSGVPMICWPF 370 (465)
Q Consensus 332 ~p~~~~l~~~~~~~~i~hgG~~s~~e---al~~GvP~i~~P~ 370 (465)
.+...++...+-..++--||.||+.| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 34445555444456777788888765 5789999999886
No 236
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=36.90 E-value=69 Score=31.05 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=14.6
Q ss_pred hHHHHHHHcCCCeEEEcCC
Q 012342 99 FTITAAQQLGLPIVLFFTI 117 (465)
Q Consensus 99 ~~~~vA~~lgiP~v~~~~~ 117 (465)
....+|+.+++|+++...+
T Consensus 213 ~~A~~Ak~~~vPv~V~a~~ 231 (310)
T PRK08535 213 QIALAAHEARVPFMVAAET 231 (310)
T ss_pred HHHHHHHHhCCCEEEeccc
Confidence 3456789999999987654
No 237
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=36.83 E-value=1.5e+02 Score=31.14 Aligned_cols=28 Identities=18% Similarity=0.366 Sum_probs=22.6
Q ss_pred cceeeecCCch------hHHHHHhcCCcEEecCC
Q 012342 343 IGGFLTHCGWN------SIVESLCSGVPMICWPF 370 (465)
Q Consensus 343 ~~~~i~hgG~~------s~~eal~~GvP~i~~P~ 370 (465)
.+++++|.|-| .+.||...++|+|++--
T Consensus 64 ~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g 97 (548)
T PRK08978 64 VGVCIATSGPGATNLITGLADALLDSVPVVAITG 97 (548)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 44499998844 77899999999999943
No 238
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=36.69 E-value=29 Score=35.63 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=21.9
Q ss_pred CCCccHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012342 19 PFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (465)
Q Consensus 19 ~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~ 49 (465)
|+.|++- -.|+++|+++||+|+++++...
T Consensus 16 GGl~~~~--~~L~~aL~~~G~~V~Vi~p~y~ 44 (476)
T cd03791 16 GGLGDVV--GALPKALAKLGHDVRVIMPKYG 44 (476)
T ss_pred CcHHHHH--HHHHHHHHHCCCeEEEEecCCc
Confidence 4444443 4699999999999999997543
No 239
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=36.30 E-value=45 Score=33.87 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012342 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (465)
Q Consensus 1 m~~~~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~ 49 (465)
|.+.-+..++.||+++--+.-| +.+|+.|...+++||++....+
T Consensus 1 ~~~~~~~~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 1 MRSRTARLKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCcccCCCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 4444444558899999855444 4467888777899999987554
No 240
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=35.95 E-value=3.3e+02 Score=24.51 Aligned_cols=147 Identities=14% Similarity=0.171 Sum_probs=77.4
Q ss_pred CceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHh-ccCceEeeccChhhhhcCCCcc
Q 012342 266 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEEVLKHPSIG 344 (465)
Q Consensus 266 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~p~~~~l~~~~~~ 344 (465)
+.+++|+.|.+. ..-++.|.+.|..+.++... +.+.+.+-. ..++....--.+...|....+
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~---------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l- 72 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEE---------LESELTLLAEQGGITWLARCFDADILEGAFL- 72 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCC---------CCHHHHHHHHcCCEEEEeCCCCHHHhCCcEE-
Confidence 458888776654 23345666678777655432 223332211 124444322223455677777
Q ss_pred eeeecCCchhHHHH-----HhcCCcEEec--CCCCChhhHHHhhcccceeEEEEecCC-CCCCHHHHHHHHHHHhcCChH
Q 012342 345 GFLTHCGWNSIVES-----LCSGVPMICW--PFTGDQPTNGRYVCNEWGVGMEINGDD-EDVIRNEVEKLVREMMEGEKG 416 (465)
Q Consensus 345 ~~i~hgG~~s~~ea-----l~~GvP~i~~--P~~~DQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~l~~ai~~~l~~~~~ 416 (465)
+|..-|...+.+. -..|+|+-++ |-..| +.+-..+ +.-++-+.+.+.. .-.-...|++.|.+++... -
T Consensus 73 -Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~-~ 148 (205)
T TIGR01470 73 -VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSGGAAPVLARLLRERIETLLPPS-L 148 (205)
T ss_pred -EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECCCCCcHHHHHHHHHHHHhcchh-H
Confidence 8887777644443 3567877433 32323 2223333 4334545554421 2223467888888887533 2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012342 417 KQMRNKAMEWKGLAEEA 433 (465)
Q Consensus 417 ~~~~~~a~~l~~~~~~~ 433 (465)
..+-+...++.+.+++.
T Consensus 149 ~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 149 GDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34667777777777654
No 241
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=35.80 E-value=49 Score=29.27 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=30.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHH
Q 012342 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRL 53 (465)
Q Consensus 13 il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~ 53 (465)
|++--.|+.|-..- ..|.+.|.++|++|.++.++.-.+.+
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 55555566676665 88999999999999999887655554
No 242
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=35.55 E-value=89 Score=26.30 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=29.7
Q ss_pred CceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012342 266 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIR 303 (465)
Q Consensus 266 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~ 303 (465)
...|++++|+......+.++++++.+. .+.+++++..
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 459999999998778888999988885 3577777654
No 243
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=35.52 E-value=5.3e+02 Score=26.82 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=98.1
Q ss_pred eeEEeecc-cc-CCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhH---HHHhccCceEeeccCh-h--hhhc
Q 012342 268 VIYVNFGS-FI-FMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF---EVKAKEKGFVASWCPQ-E--EVLK 339 (465)
Q Consensus 268 ~V~vs~GS-~~-~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~p~-~--~~l~ 339 (465)
.-++++-| .. ....+.+.+++.-+-+.+.++++.-.++.. +...+ .++.+.++.+.-|.+. . .+++
T Consensus 294 ~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~------le~~~~~la~~~~~~~~~~i~~~~~la~~i~a 367 (487)
T COG0297 294 GPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPE------LEEALRALASRHPGRVLVVIGYDEPLAHLIYA 367 (487)
T ss_pred CcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHH------HHHHHHHHHHhcCceEEEEeeecHHHHHHHHh
Confidence 34444444 33 334566666666666666666655444211 22222 2345566666555443 2 3666
Q ss_pred CCCcceeee-----cCCchhHHHHHhcCCcEEecCCCC------ChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHH
Q 012342 340 HPSIGGFLT-----HCGWNSIVESLCSGVPMICWPFTG------DQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVR 408 (465)
Q Consensus 340 ~~~~~~~i~-----hgG~~s~~eal~~GvP~i~~P~~~------DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~ 408 (465)
-+++ ++- -||. |=++|+.+|.+-|+.+..+ |-..++ . ..-|.|+.+. ..+++++..+++
T Consensus 368 gaD~--~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~-~~~gtGf~f~----~~~~~~l~~al~ 437 (487)
T COG0297 368 GADV--ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--I-QGVGTGFLFL----QTNPDHLANALR 437 (487)
T ss_pred cCCE--EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--c-cCceeEEEEe----cCCHHHHHHHHH
Confidence 6665 553 3665 5678999999888888844 332333 3 5568898885 349999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Q 012342 409 EMMEGEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 454 (465)
Q Consensus 409 ~~l~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 454 (465)
+.+.= |+..-..++...+.++...-+-+....+.++-.+..
T Consensus 438 rA~~~-----y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~~ 478 (487)
T COG0297 438 RALVL-----YRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYKPL 478 (487)
T ss_pred HHHHH-----hhCCHHHHHHHHHhhcccccCchhHHHHHHHHHHHH
Confidence 88741 333333355555555555556666667776655543
No 244
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=34.85 E-value=50 Score=34.05 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCCccHHHH------------HHHHHHHHhCCCEEEEEeCCc
Q 012342 10 KVHAVCIPSPFQSHIKAM------------LKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~------------l~La~~L~~rGh~Vt~~t~~~ 48 (465)
..||++..-|++=.+.|. ..||+.+..+|++||+++++.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 468888888888888776 578999999999999999754
No 245
>PLN02939 transferase, transferring glycosyl groups
Probab=34.72 E-value=71 Score=35.88 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=30.4
Q ss_pred CCCCEEEEEcC-----CCCccHH-HHHHHHHHHHhCCCEEEEEeCCcc
Q 012342 8 CSKVHAVCIPS-----PFQSHIK-AMLKLAKLLHHKGFHITFVNTEFN 49 (465)
Q Consensus 8 ~~~~~il~~~~-----~~~GH~~-P~l~La~~L~~rGh~Vt~~t~~~~ 49 (465)
.+.|||+++++ .-.|=+- -.-.|.+.|++.||+|.+++|.+.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 34799999864 2233333 345789999999999999998653
No 246
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=34.70 E-value=63 Score=21.17 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 012342 399 IRNEVEKLVREMMEG-EKGKQMRNKAMEWK 427 (465)
Q Consensus 399 ~~~~l~~ai~~~l~~-~~~~~~~~~a~~l~ 427 (465)
++++|.+||..+.++ -+ +++.|++..
T Consensus 1 tee~l~~Ai~~v~~g~~S---~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMS---IRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTSS----HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCCCC---HHHHHHHHC
Confidence 478999999999876 34 777777653
No 247
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.49 E-value=2e+02 Score=30.62 Aligned_cols=28 Identities=11% Similarity=0.394 Sum_probs=22.4
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+++|...++|+|++-
T Consensus 77 ~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~ 110 (570)
T PRK06725 77 KVGVVFATSGPGATNLVTGLADAYMDSIPLVVIT 110 (570)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEe
Confidence 345589998855 5679999999999984
No 248
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.45 E-value=2e+02 Score=30.52 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=22.7
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 67 ~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 67 KVGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 345599998855 6789999999999984
No 249
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.39 E-value=2.1e+02 Score=27.56 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=39.3
Q ss_pred cCCCcceeeecCCchhHHHHHh----cCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 012342 339 KHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 339 ~~~~~~~~i~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~ 414 (465)
..+++ +|+=||=||+++++. .++|++++... .+|. + -..+.+++.++|.++++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~lGF---l----~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG------------RLGF---L----TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------cccc---c----ccCCHHHHHHHHHHHHcCC
Confidence 34666 999999999999975 36788876541 1121 2 3457899999999998754
No 250
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=33.97 E-value=73 Score=26.63 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012342 23 HIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 23 H~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 56 (465)
.+--.+-|+-.|.++||+|++...+.-...++-+
T Consensus 12 q~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 12 QTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 3445688999999999999999988877677665
No 251
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.87 E-value=4.8e+02 Score=25.83 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=45.7
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcc--hHHHHhhhcCCCCCCCCCeeEEeCCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN--HRRLLKARGQHSLDGLPSFRFEAIPD 75 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~--~~~~~~~~~~~~~~~~~~i~f~~l~~ 75 (465)
|.+++++-.|-.||---|.-=|..|++.|++|.++..-.. .+.+.. .+.++++.++.
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~---------hprI~ih~m~~ 70 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN---------HPRIRIHGMPN 70 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc---------CCceEEEeCCC
Confidence 7899999999999999999999999999999999864322 222322 36899999884
No 252
>PRK05858 hypothetical protein; Provisional
Probab=33.77 E-value=2e+02 Score=30.25 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=21.7
Q ss_pred cceeeecCCc------hhHHHHHhcCCcEEecC
Q 012342 343 IGGFLTHCGW------NSIVESLCSGVPMICWP 369 (465)
Q Consensus 343 ~~~~i~hgG~------~s~~eal~~GvP~i~~P 369 (465)
.++++.|.|- +.+.+|-..++|+|++.
T Consensus 68 ~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 68 PGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred CeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 3448888874 47889999999999985
No 253
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.77 E-value=1.2e+02 Score=25.25 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~ 52 (465)
+.+|++.+..+.+|-.----++..|...|++|...-..-..+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~ 43 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEE 43 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 3589999999999999999999999999999998765443333
No 254
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=33.25 E-value=2.1e+02 Score=30.27 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=22.0
Q ss_pred cceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 343 IGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 343 ~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 71 ~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 71 VGVCVATSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred CeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44589998844 7789999999999984
No 255
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=32.84 E-value=46 Score=28.65 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=24.4
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEe
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t 45 (465)
++|.|+-.+.+|. .+|+.|.++||+|+++.
T Consensus 2 ~~Ig~IGlG~mG~-----~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGS-----AMARNLAKAGYEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHH-----HHHHHHHHTTTEEEEEE
T ss_pred CEEEEEchHHHHH-----HHHHHHHhcCCeEEeec
Confidence 5889998888884 78999999999999886
No 256
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.71 E-value=2.3e+02 Score=30.06 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=22.8
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+++|...++|+|++-
T Consensus 67 ~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 67 EVGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred CceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 455599998855 5789999999999994
No 257
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.55 E-value=1.3e+02 Score=28.65 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=30.2
Q ss_pred CceEeeccChhh---hhcCCCcceeeecCCchhHHHHHhcCCcEE
Q 012342 325 KGFVASWCPQEE---VLKHPSIGGFLTHCGWNSIVESLCSGVPMI 366 (465)
Q Consensus 325 ~~~v~~~~p~~~---~l~~~~~~~~i~hgG~~s~~eal~~GvP~i 366 (465)
++.+.+|+||++ +|-.|++ -+-. |--|..-|..+|.|.+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPfl 280 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFL 280 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcE
Confidence 344579999864 8888887 3333 6779999999999987
No 258
>PRK13604 luxD acyl transferase; Provisional
Probab=32.49 E-value=88 Score=30.25 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEE
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFV 44 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~ 44 (465)
+..++++..|..++-.-+..+|+.|+++|+.|..+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 44677788888888777999999999999999877
No 259
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=32.39 E-value=76 Score=30.51 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 23 HIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 23 H~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
.-.-+..+++.|.++||+|++++...
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecC
Confidence 44568899999999999999998644
No 260
>PRK07236 hypothetical protein; Provisional
Probab=32.11 E-value=51 Score=32.84 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEe
Q 012342 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (465)
Q Consensus 1 m~~~~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t 45 (465)
|-+|. .++|+|+--|--| +.+|..|+++|++|+++=
T Consensus 1 ~~~~~----~~~ViIVGaG~aG-----l~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 1 MTHMS----GPRAVVIGGSLGG-----LFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCCC----CCeEEEECCCHHH-----HHHHHHHHhCCCCEEEEe
Confidence 54555 6799999977444 789999999999999985
No 261
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=32.04 E-value=85 Score=30.05 Aligned_cols=38 Identities=5% Similarity=0.003 Sum_probs=33.6
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
|+|+++-=|+.|-..-.+.||..|+++|++|.++=...
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 47888889999999999999999999999998885433
No 262
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=31.71 E-value=1.2e+02 Score=24.35 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=33.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012342 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (465)
Q Consensus 13 il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~ 52 (465)
++..+.++..|-....-++..|.++|++|.+.......+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~ 41 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEE 41 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHH
Confidence 5677779999999999999999999999998865443333
No 263
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.59 E-value=51 Score=31.80 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
+++|.|+-.|..|. .+|+.|+++||+|+++..
T Consensus 4 ~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r 35 (308)
T PRK14619 4 PKTIAILGAGAWGS-----TLAGLASANGHRVRVWSR 35 (308)
T ss_pred CCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeC
Confidence 68999999998885 789999999999998865
No 264
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=31.57 E-value=76 Score=30.65 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=32.6
Q ss_pred EEEEEcC-CCCccHHHHHHHHHHHHhCCCEEEEEeCCcchH
Q 012342 12 HAVCIPS-PFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (465)
Q Consensus 12 ~il~~~~-~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~ 51 (465)
|++|+.- |+-|-..---++|..++++|++|-++++.....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 4555554 899999999999999999999999999877653
No 265
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.49 E-value=62 Score=31.52 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=28.6
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
.|+|.|+-.|..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5699999999988 46889999999999999763
No 266
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=31.36 E-value=2.6e+02 Score=29.70 Aligned_cols=28 Identities=11% Similarity=0.193 Sum_probs=22.7
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 64 RMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 345599998855 6679999999999995
No 267
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=31.19 E-value=55 Score=32.64 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=24.5
Q ss_pred CCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 20 FQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 20 ~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
.-|--.=...||+.|+++||+|+++|+..
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~ 47 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRAT 47 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEeccc
Confidence 34666778999999999999999999753
No 268
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.01 E-value=2.4e+02 Score=29.82 Aligned_cols=28 Identities=11% Similarity=0.320 Sum_probs=22.8
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+++|...++|+|++.
T Consensus 66 ~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 66 KVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 345599998844 7789999999999984
No 269
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=30.99 E-value=2.6e+02 Score=29.48 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=22.5
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 71 ~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 71 RPGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 345599998854 7789999999999883
No 270
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=30.97 E-value=83 Score=27.64 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=36.6
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~ 55 (465)
+..++|+..++.|--+=..++++++.++|+.|.|++.+...+.+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 4578999999999999999999999999999999987766655554
No 271
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=30.71 E-value=29 Score=32.98 Aligned_cols=40 Identities=18% Similarity=0.374 Sum_probs=32.5
Q ss_pred cCCchhHH--HHHhcCCcEEecCCCCChhhHHHhhcccceeE
Q 012342 349 HCGWNSIV--ESLCSGVPMICWPFTGDQPTNGRYVCNEWGVG 388 (465)
Q Consensus 349 hgG~~s~~--eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g 388 (465)
-||||+++ -|-.+||-++++-+...|..+++.-+.+.|+.
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 36888765 45577999999999999999999733777887
No 272
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=30.68 E-value=61 Score=23.29 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCCEEEEEe
Q 012342 28 LKLAKLLHHKGFHITFVN 45 (465)
Q Consensus 28 l~La~~L~~rGh~Vt~~t 45 (465)
+..|..|+++|++|+++=
T Consensus 9 l~aA~~L~~~g~~v~v~E 26 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 567899999999999984
No 273
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=30.66 E-value=1.6e+02 Score=29.12 Aligned_cols=96 Identities=10% Similarity=0.171 Sum_probs=52.3
Q ss_pred eeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCch-hHHH-HhccCceEe--ec------------
Q 012342 268 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPA-EFEV-KAKEKGFVA--SW------------ 331 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~v~--~~------------ 331 (465)
+++.+-||-+...+. .++++.|++.+..++|+........ +.++. ++.- .++....-. .|
T Consensus 4 i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~--~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 79 (352)
T PRK12446 4 IVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEK--TIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKG 79 (352)
T ss_pred EEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcccc--ccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHH
Confidence 667777775533332 3466677777899999976543221 11211 1110 011000000 00
Q ss_pred -cChhhhhc--CCCcceeeecCCchh---HHHHHhcCCcEEecC
Q 012342 332 -CPQEEVLK--HPSIGGFLTHCGWNS---IVESLCSGVPMICWP 369 (465)
Q Consensus 332 -~p~~~~l~--~~~~~~~i~hgG~~s---~~eal~~GvP~i~~P 369 (465)
.--..++. .|++ +|++||+-| +..|...|+|+++.=
T Consensus 80 ~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 80 VMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred HHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 00112344 4666 999999997 889999999998743
No 274
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=30.57 E-value=1.2e+02 Score=30.23 Aligned_cols=115 Identities=21% Similarity=0.174 Sum_probs=63.7
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCccee
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGF 346 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~ 346 (465)
|-|.-+.||+. .||++.+......+++.+|++. |-.|...- +.-++| |..+=++
T Consensus 195 P~I~aGqgTig-------~EIl~ql~~~~~AI~vpVGGGG-------LiaGIat~----vk~~~p--------~vkIIGV 248 (457)
T KOG1250|consen 195 PDIWAGQGTIG-------LEILEQLKEPDGAIVVPVGGGG-------LIAGIATG----VKRVGP--------HVKIIGV 248 (457)
T ss_pred chhhcCcchHH-------HHHHHhhcCCCCeEEEecCCch-------hHHHHHHH----HHHhCC--------CCceEEE
Confidence 45555555544 4666777666556666676653 33333211 111222 4444345
Q ss_pred eecCCchhHHHHHhcCCcEEecCC---CCCh------hhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCCh
Q 012342 347 LTHCGWNSIVESLCSGVPMICWPF---TGDQ------PTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEK 415 (465)
Q Consensus 347 i~hgG~~s~~eal~~GvP~i~~P~---~~DQ------~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~ 415 (465)
-|+ |..++..++.+|.|+-. |. ++|- -.|+-+++..+-....+ ++.+++..+|.++++|+.
T Consensus 249 Et~-~a~~f~~sl~~g~~V~l-p~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvv------V~~~ei~aaI~~l~edek 318 (457)
T KOG1250|consen 249 ETE-GAHSFNASLKAGKPVTL-PKITSLADGLAVKTVGENTFELAQKLVDRVVV------VEDDEIAAAILRLFEDEK 318 (457)
T ss_pred eec-CcHHHHHHHhcCCeeec-ccccchhcccccchhhHHHHHHHHhcCceEEE------eccHHHHHHHHHHHHhhh
Confidence 555 67899999999998642 32 3331 12333332222222223 578899999999998764
No 275
>PRK06849 hypothetical protein; Provisional
Probab=30.50 E-value=99 Score=30.89 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
+++||++... ...-+.+++.|.++||+|+++....
T Consensus 4 ~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6788887532 2358999999999999999997754
No 276
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=30.22 E-value=1.3e+02 Score=30.54 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.4
Q ss_pred cCCCCccHHHHHHHHHHHHhCCCEEEEE
Q 012342 17 PSPFQSHIKAMLKLAKLLHHKGFHITFV 44 (465)
Q Consensus 17 ~~~~~GH~~P~l~La~~L~~rGh~Vt~~ 44 (465)
|..+.|-..-.+.|.+.|++||++|.=+
T Consensus 8 ~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 8 TSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 4458899999999999999999999654
No 277
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=30.11 E-value=79 Score=28.01 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=25.1
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 56 (465)
|+|.++.. ||+- +.+|..|+++||+|+.+-. +.+.++..
T Consensus 1 M~I~ViGl---GyvG--l~~A~~lA~~G~~V~g~D~--~~~~v~~l 39 (185)
T PF03721_consen 1 MKIAVIGL---GYVG--LPLAAALAEKGHQVIGVDI--DEEKVEAL 39 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S---HHHHHHH
T ss_pred CEEEEECC---Ccch--HHHHHHHHhCCCEEEEEeC--ChHHHHHH
Confidence 47777754 4442 7889999999999999854 44455544
No 278
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=29.99 E-value=1.1e+02 Score=27.80 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~ 50 (465)
+++.++-.|-.| -.||+.|++.||+|++.+.....
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCChh
Confidence 355555544444 47899999999999999775554
No 279
>PRK09620 hypothetical protein; Provisional
Probab=29.97 E-value=79 Score=29.14 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=19.9
Q ss_pred CCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 20 FQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 20 ~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
+.|-+- ..||+.|.++|++|+++...
T Consensus 27 SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 27 AKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 334443 57899999999999999754
No 280
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=29.81 E-value=97 Score=27.49 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=34.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHh-CCCEEEEEeCCcchHHHHh
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHH-KGFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~-rGh~Vt~~t~~~~~~~~~~ 55 (465)
||++.-.|+.| .+=...|.+.|.+ .||+|.++.++.-.+.+..
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 78777778877 5568999999999 5999999998776555543
No 281
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.68 E-value=3.5e+02 Score=28.66 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=22.4
Q ss_pred cceeeecCCc------hhHHHHHhcCCcEEecC
Q 012342 343 IGGFLTHCGW------NSIVESLCSGVPMICWP 369 (465)
Q Consensus 343 ~~~~i~hgG~------~s~~eal~~GvP~i~~P 369 (465)
.+++++|.|- +.+.+|...++|+|++-
T Consensus 68 ~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 68 TGVVLVTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 4559999884 47889999999999994
No 282
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.61 E-value=2.9e+02 Score=29.36 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=22.8
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 67 ~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 67 KVGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred CCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 455699998854 6789999999999985
No 283
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=29.44 E-value=1.2e+02 Score=26.32 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=23.2
Q ss_pred CCCceeEEeeccccCCCHHHHHHHHHHHHhCC
Q 012342 264 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSN 295 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~ 295 (465)
+.+-.||+++||......+.+...++.|.+..
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 33458999999987656667777777776643
No 284
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=29.35 E-value=74 Score=30.64 Aligned_cols=45 Identities=9% Similarity=-0.002 Sum_probs=39.8
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhh
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~~ 56 (465)
|||++-....||+.=...+.+.|.++ +.+|++++.+.+.+.++..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~ 47 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH 47 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC
Confidence 58899999999999999999999998 9999999998877666543
No 285
>PRK11269 glyoxylate carboligase; Provisional
Probab=29.08 E-value=1.7e+02 Score=31.14 Aligned_cols=27 Identities=19% Similarity=0.517 Sum_probs=22.3
Q ss_pred cceeeecCC------chhHHHHHhcCCcEEecC
Q 012342 343 IGGFLTHCG------WNSIVESLCSGVPMICWP 369 (465)
Q Consensus 343 ~~~~i~hgG------~~s~~eal~~GvP~i~~P 369 (465)
.+++++|.| .+.+++|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 455787877 678899999999999984
No 286
>PRK07524 hypothetical protein; Provisional
Probab=28.90 E-value=3.2e+02 Score=28.69 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=21.6
Q ss_pred cceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 343 IGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 343 ~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
.++++.|.|-| .+.+|...++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~ 97 (535)
T PRK07524 65 PGVCFIITGPGMTNIATAMGQAYADSIPMLVIS 97 (535)
T ss_pred CeEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488888855 7789999999999883
No 287
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=28.75 E-value=1.3e+02 Score=24.30 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=33.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
||++..-++.|-......|++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788889999999999999999999999999887654
No 288
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=28.64 E-value=2.7e+02 Score=29.55 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=22.8
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
+.+++++|.|-| .+.+|...++|+|++.
T Consensus 73 ~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 73 KLGVAVVTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 355599998855 6779999999999995
No 289
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=28.48 E-value=99 Score=28.95 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=32.0
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|.|.++.=|+-|...-...||..|+++|++|.++=.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~ 36 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGC 36 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 467888778999999999999999999999998844
No 290
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=28.44 E-value=86 Score=29.55 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=39.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhh
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~~ 56 (465)
|||++-..+.|++.=+..+.+.|.++ +-+|++++.+.+.+.++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM 47 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC
Confidence 58999999999999999999999997 4899999998777666553
No 291
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=28.36 E-value=86 Score=30.30 Aligned_cols=18 Identities=11% Similarity=0.277 Sum_probs=14.3
Q ss_pred HHHHHHHcCCCeEEEcCC
Q 012342 100 TITAAQQLGLPIVLFFTI 117 (465)
Q Consensus 100 ~~~vA~~lgiP~v~~~~~ 117 (465)
...+|+.+++|+++...+
T Consensus 223 lA~~Ak~~~vPv~V~a~s 240 (303)
T TIGR00524 223 LAVLAKEFRIPFFVAAPL 240 (303)
T ss_pred HHHHHHHhCCCEEEeccc
Confidence 456789999999987654
No 292
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=28.31 E-value=1e+02 Score=28.85 Aligned_cols=36 Identities=6% Similarity=-0.066 Sum_probs=31.5
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|+|.++.=|+-|-..-...||..|+++|++|.++=.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 467888778999999999999999999999998833
No 293
>PRK11914 diacylglycerol kinase; Reviewed
Probab=27.98 E-value=3.3e+02 Score=26.04 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=47.3
Q ss_pred eeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceee
Q 012342 268 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFL 347 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i 347 (465)
.+.++--|-.....+.+.++.+.|++.+..+.+..... +.+..+ +. ........++ +|
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~---------~~~~~~-~a----------~~~~~~~~d~--vv 69 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD---------AHDARH-LV----------AAALAKGTDA--LV 69 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC---------HHHHHH-HH----------HHHHhcCCCE--EE
Confidence 44444444333334567778888888887765443321 111110 00 0111223455 99
Q ss_pred ecCCchhHHHHH----hcCCcEEecCC
Q 012342 348 THCGWNSIVESL----CSGVPMICWPF 370 (465)
Q Consensus 348 ~hgG~~s~~eal----~~GvP~i~~P~ 370 (465)
--||=||+.|++ ..++|+-++|.
T Consensus 70 v~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 70 VVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EECCchHHHHHhHHhccCCCcEEEEeC
Confidence 999999999987 34799999997
No 294
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=27.81 E-value=1.1e+02 Score=26.34 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=28.8
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~ 54 (465)
..+|+++..|..| ...++.|.+.|++||++++. ..+.+.
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~-~~~~l~ 51 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPE-ICKEMK 51 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCc-cCHHHH
Confidence 4588888766554 67899999999999999653 333443
No 295
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=27.67 E-value=86 Score=23.04 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCc
Q 012342 27 MLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 27 ~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
-+.+|..|+++|.+||++....
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHhCcEEEEEeccc
Confidence 4789999999999999998644
No 296
>PRK08266 hypothetical protein; Provisional
Probab=27.65 E-value=3.4e+02 Score=28.51 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=22.1
Q ss_pred cceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 343 IGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 343 ~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 69 ~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 69 PGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 34488998854 7889999999999984
No 297
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=27.65 E-value=79 Score=31.94 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|+|.|+..|..| +.+|..|+++||+|+++..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 478888877777 6889999999999999864
No 298
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=27.58 E-value=4e+02 Score=22.89 Aligned_cols=141 Identities=11% Similarity=0.078 Sum_probs=75.7
Q ss_pred eeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceee
Q 012342 268 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFL 347 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i 347 (465)
.|-|-+||.. +-+.+++.++.|++.|.++-..+-+... -|+.+.+ +..=.....++++|
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAHR------TPe~m~~-------------ya~~a~~~g~~viI 62 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAHR------TPEKMFE-------------YAEEAEERGVKVII 62 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEeccC------CHHHHHH-------------HHHHHHHCCCeEEE
Confidence 5778889876 4566777888888888887554433221 2332211 01112234455577
Q ss_pred ecCCch---hHHHHHhcCCcEEecCCCCChh---hHHHhhcccceeEEEEecCC--CCCCHHHHHHHHHHHhcCChHHHH
Q 012342 348 THCGWN---SIVESLCSGVPMICWPFTGDQP---TNGRYVCNEWGVGMEINGDD--EDVIRNEVEKLVREMMEGEKGKQM 419 (465)
Q Consensus 348 ~hgG~~---s~~eal~~GvP~i~~P~~~DQ~---~na~~~~~~~g~g~~~~~~~--~~~~~~~l~~ai~~~l~~~~~~~~ 419 (465)
.-+|.. .=+-|...=+|+|++|....-. +---.+ -+.--|+.+.+-. +..++.-+...|-. +.|++ +
T Consensus 63 AgAGgAAHLPGmvAa~T~lPViGVPv~s~~L~GlDSL~Si-VQMP~GvPVaTvaIg~a~NAallAa~ILa-~~d~~---l 137 (162)
T COG0041 63 AGAGGAAHLPGMVAAKTPLPVIGVPVQSKALSGLDSLLSI-VQMPAGVPVATVAIGNAANAALLAAQILA-IKDPE---L 137 (162)
T ss_pred ecCcchhhcchhhhhcCCCCeEeccCccccccchHHHHHH-hcCCCCCeeEEEeecchhhHHHHHHHHHc-CCCHH---H
Confidence 766632 1123344579999999963211 111122 1122232221110 33455555554432 34666 9
Q ss_pred HHHHHHHHHHHHHHh
Q 012342 420 RNKAMEWKGLAEEAA 434 (465)
Q Consensus 420 ~~~a~~l~~~~~~~~ 434 (465)
+++..++++..++.+
T Consensus 138 ~~kl~~~r~~~~~~V 152 (162)
T COG0041 138 AEKLAEFREAQTEEV 152 (162)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888654
No 299
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=27.49 E-value=86 Score=28.79 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 23 HIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 23 H~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
|+..|-..|+.|.++|++|+.+...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6778999999999999999999886
No 300
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.42 E-value=1.7e+02 Score=23.42 Aligned_cols=38 Identities=5% Similarity=0.235 Sum_probs=30.7
Q ss_pred CCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012342 18 SPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 18 ~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~ 55 (465)
+...|.-..++.+.+.+.++|..|..+|........+.
T Consensus 60 is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 60 ISYSGETRELIELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp EESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred eeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 34788999999999999999999999987665544443
No 301
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=27.42 E-value=1.1e+02 Score=24.83 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
...|+++++|+. +...+..++.|.+.|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 458999999988 56779999999999999988754
No 302
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=27.32 E-value=58 Score=28.90 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|||.++ ++.|++-- .|.++...|||+||-++-
T Consensus 1 mKIaiI--gAsG~~Gs--~i~~EA~~RGHeVTAivR 32 (211)
T COG2910 1 MKIAII--GASGKAGS--RILKEALKRGHEVTAIVR 32 (211)
T ss_pred CeEEEE--ecCchhHH--HHHHHHHhCCCeeEEEEe
Confidence 466665 45666553 578999999999999874
No 303
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.24 E-value=1.5e+02 Score=25.85 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=33.3
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEE-EEeC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHIT-FVNT 46 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt-~~t~ 46 (465)
.++|.+...|+.|-..-.+.++..|.+.|+.|- |+|+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 689999999999999999999999999999995 4443
No 304
>PRK08617 acetolactate synthase; Reviewed
Probab=26.99 E-value=2.8e+02 Score=29.22 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.0
Q ss_pred cceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 343 IGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 343 ~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 68 ~gv~~vt~GpG~~N~l~gl~~A~~~~~Pvlvis 100 (552)
T PRK08617 68 PGVVLVTSGPGVSNLATGLVTATAEGDPVVAIG 100 (552)
T ss_pred CEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEe
Confidence 44588888844 7889999999999985
No 305
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=26.95 E-value=1.1e+02 Score=26.85 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=24.8
Q ss_pred ccHHH-HHHHHHHHHh-CCCEEEEEeCCcchHH
Q 012342 22 SHIKA-MLKLAKLLHH-KGFHITFVNTEFNHRR 52 (465)
Q Consensus 22 GH~~P-~l~La~~L~~-rGh~Vt~~t~~~~~~~ 52 (465)
||... .+.+.+.|.+ +||+|.++.++.-.+.
T Consensus 10 g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~v 42 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQV 42 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHH
Confidence 78766 8899999985 5999999988765543
No 306
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=26.90 E-value=1.4e+02 Score=25.74 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=21.2
Q ss_pred cceeeecCCc------hhHHHHHhcCCcEEecCC
Q 012342 343 IGGFLTHCGW------NSIVESLCSGVPMICWPF 370 (465)
Q Consensus 343 ~~~~i~hgG~------~s~~eal~~GvP~i~~P~ 370 (465)
.+++++|.|- +++.+|...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 4448888874 477789999999999875
No 307
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=26.43 E-value=85 Score=29.77 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=12.1
Q ss_pred HHHHHHHcCCCeEEEcCC
Q 012342 100 TITAAQQLGLPIVLFFTI 117 (465)
Q Consensus 100 ~~~vA~~lgiP~v~~~~~ 117 (465)
...+|+.+++|++++..+
T Consensus 202 ~a~~Ak~~~vPv~v~~~~ 219 (282)
T PF01008_consen 202 LALAAKEFNVPVYVLAES 219 (282)
T ss_dssp HHHHHHHTT-EEEEE--G
T ss_pred HHHHHHhhCCCEEEEccc
Confidence 456889999999987543
No 308
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=26.38 E-value=1.2e+02 Score=24.52 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=28.4
Q ss_pred EEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 14 VCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 14 l~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
+++..|..|+-.-+..+++.|+++|+.|..+..+.
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 36 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYPG 36 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 55666777778889999999999999999985544
No 309
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=26.32 E-value=1.2e+02 Score=27.46 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=31.2
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
+.+|.+=..|+-|-.+-||.=|..|.++|.+|.+..-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 78999999999999999999999999999999986554
No 310
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=26.27 E-value=2e+02 Score=26.93 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchH
Q 012342 27 MLKLAKLLHHKGFHITFVNTEFNHR 51 (465)
Q Consensus 27 ~l~La~~L~~rGh~Vt~~t~~~~~~ 51 (465)
+..|++.|.+ +|+|+++.|.....
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCc
Confidence 6788888865 68999998876553
No 311
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=26.11 E-value=1.5e+02 Score=30.10 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=53.2
Q ss_pred hhhhc-CCCcceeeecCC---------ch-----hHHHHHhcCCcEEecCCCCC-----hhhHHHhhcccceeE-EEEec
Q 012342 335 EEVLK-HPSIGGFLTHCG---------WN-----SIVESLCSGVPMICWPFTGD-----QPTNGRYVCNEWGVG-MEING 393 (465)
Q Consensus 335 ~~~l~-~~~~~~~i~hgG---------~~-----s~~eal~~GvP~i~~P~~~D-----Q~~na~~~~~~~g~g-~~~~~ 393 (465)
..++. |++++.+||--| +. .+.|.-..|+|.|++=-..| ....+..+.+++++- +.+..
T Consensus 138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c 217 (492)
T TIGR02836 138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDV 217 (492)
T ss_pred HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEH
Confidence 34667 999999999544 22 45566788999998744333 222344554667865 56777
Q ss_pred CCCCCCHHHHHHHHHHHh
Q 012342 394 DDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 394 ~~~~~~~~~l~~ai~~~l 411 (465)
..++.++|.+.++++|
T Consensus 218 --~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 218 --ESMRESDILSVLEEVL 233 (492)
T ss_pred --HHcCHHHHHHHHHHHH
Confidence 8899999999999987
No 312
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=26.09 E-value=3.8e+02 Score=28.20 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=22.1
Q ss_pred cceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 343 IGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 343 ~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 65 pgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~ 97 (549)
T PRK06457 65 PSACMGTSGPGSIHLLNGLYDAKMDHAPVIALT 97 (549)
T ss_pred CeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEe
Confidence 44499999854 7789999999999983
No 313
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.92 E-value=1.2e+02 Score=27.78 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEe
Q 012342 1 MESKPKACSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (465)
Q Consensus 1 m~~~~~~~~~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t 45 (465)
|+++++ +++++++-.++|-+- -+||+++++.|++|.-.+
T Consensus 1 ~e~~~~----~k~VlItgcs~GGIG--~ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 1 SELQSQ----PKKVLITGCSSGGIG--YALAKEFARNGYLVYATA 39 (289)
T ss_pred CCcccC----CCeEEEeecCCcchh--HHHHHHHHhCCeEEEEEc
Confidence 555554 344555444444443 278999999999986543
No 314
>PRK08939 primosomal protein DnaI; Reviewed
Probab=25.92 E-value=1.1e+02 Score=29.71 Aligned_cols=47 Identities=15% Similarity=-0.029 Sum_probs=40.3
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 56 (465)
...++++..++.|-.+=+.++|.+|.++|+.|+|++.+.+...+..+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~ 202 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS 202 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH
Confidence 34688888899999999999999999999999999988776666554
No 315
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=25.89 E-value=1.3e+02 Score=26.66 Aligned_cols=39 Identities=13% Similarity=0.335 Sum_probs=30.9
Q ss_pred CCEEEEEcC--CCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 10 KVHAVCIPS--PFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 10 ~~~il~~~~--~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
++|++.++. ++.|--.-...||..|+++|++|.++=...
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 456666654 578888899999999999999998885533
No 316
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=25.88 E-value=91 Score=28.35 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=32.0
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
+-|++..+|+.|-..---.||++|.+++|+|.-.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 357788889999999999999999999999987765
No 317
>PRK06835 DNA replication protein DnaC; Validated
Probab=25.86 E-value=1.2e+02 Score=29.74 Aligned_cols=45 Identities=11% Similarity=-0.023 Sum_probs=38.6
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~ 55 (465)
..++|+.-++.|-.+=..++|++|.++|+.|.+++.......+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 468888888999999999999999999999999988776665544
No 318
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=25.69 E-value=92 Score=27.40 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=29.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHH
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~ 52 (465)
||++.-.|+.|= .-...+.+.|.++|++|.++.++.-.+.
T Consensus 2 ~I~lgvtGs~~a-~~~~~ll~~L~~~g~~V~vi~T~~A~~f 41 (177)
T TIGR02113 2 KILLAVTGSIAA-YKAADLTSQLTKLGYDVTVLMTQAATQF 41 (177)
T ss_pred EEEEEEcCHHHH-HHHHHHHHHHHHCCCEEEEEEChHHHhh
Confidence 566666666554 4556999999999999999988664433
No 319
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=25.67 E-value=1.9e+02 Score=26.96 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchH
Q 012342 27 MLKLAKLLHHKGFHITFVNTEFNHR 51 (465)
Q Consensus 27 ~l~La~~L~~rGh~Vt~~t~~~~~~ 51 (465)
+..|++.|.+.| +|+++.|.....
T Consensus 16 i~aL~~~l~~~g-~V~VvAP~~~~S 39 (244)
T TIGR00087 16 IRALYQALKELG-EVTVVAPARQRS 39 (244)
T ss_pred HHHHHHHHHhCC-CEEEEeCCCCcc
Confidence 567889999888 899999876553
No 320
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=25.50 E-value=94 Score=30.30 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=28.0
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
++|.++-.|++| -+||+.|++.||+|++..-
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r 32 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGR 32 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEec
Confidence 589999999999 5899999999999999875
No 321
>PRK07586 hypothetical protein; Validated
Probab=25.50 E-value=4.1e+02 Score=27.68 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=21.0
Q ss_pred cceeeecCCchh------HHHHHhcCCcEEecCC
Q 012342 343 IGGFLTHCGWNS------IVESLCSGVPMICWPF 370 (465)
Q Consensus 343 ~~~~i~hgG~~s------~~eal~~GvP~i~~P~ 370 (465)
.++++.|.|-|. +.+|...++|+|++.-
T Consensus 65 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G 98 (514)
T PRK07586 65 PAATLLHLGPGLANGLANLHNARRARTPIVNIVG 98 (514)
T ss_pred CEEEEecccHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 344888887554 4479999999999853
No 322
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.43 E-value=2.4e+02 Score=27.86 Aligned_cols=130 Identities=15% Similarity=0.210 Sum_probs=76.7
Q ss_pred CCCceeEEeeccccCCCHHHHHHHHHHHHh---------CCC-CEEEEEcCCCCCCCcCCCchhHHHHhc----cCceE-
Q 012342 264 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVN---------SNH-PFLWIIRPDLVTGETADLPAEFEVKAK----EKGFV- 328 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~---------~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v- 328 (465)
++++.++||- .+..+.+.+..+++||.. .+. ..+..+.+... +.+.+.+.+. .++.+
T Consensus 252 ~~~pallvsS--TswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGP------lkE~Y~~~I~~~~~~~v~~~ 323 (444)
T KOG2941|consen 252 PERPALLVSS--TSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGP------LKEKYSQEIHEKNLQHVQVC 323 (444)
T ss_pred cCCCeEEEec--CCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCc------hhHHHHHHHHHhcccceeee
Confidence 3466788862 232344567777788762 222 34444444322 3333333222 35555
Q ss_pred eeccC---hhhhhcCCCcceeeecCCch-----hHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCH
Q 012342 329 ASWCP---QEEVLKHPSIGGFLTHCGWN-----SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIR 400 (465)
Q Consensus 329 ~~~~p---~~~~l~~~~~~~~i~hgG~~-----s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~ 400 (465)
..|.. ...+|..+++|..+|-.-.| -+..-.-+|+|++.+-+--= ..+++.-.-|+... +.
T Consensus 324 tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl-----~ELVkh~eNGlvF~------Ds 392 (444)
T KOG2941|consen 324 TPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCL-----DELVKHGENGLVFE------DS 392 (444)
T ss_pred ecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhH-----HHHHhcCCCceEec------cH
Confidence 57863 45699999999888876554 45666778888888765321 12224333355553 57
Q ss_pred HHHHHHHHHHhc
Q 012342 401 NEVEKLVREMME 412 (465)
Q Consensus 401 ~~l~~ai~~~l~ 412 (465)
+++.+.+..++.
T Consensus 393 ~eLa~ql~~lf~ 404 (444)
T KOG2941|consen 393 EELAEQLQMLFK 404 (444)
T ss_pred HHHHHHHHHHHh
Confidence 889998888876
No 323
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=25.25 E-value=1.2e+02 Score=26.85 Aligned_cols=46 Identities=20% Similarity=0.124 Sum_probs=30.1
Q ss_pred CccHHHHH-HHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCC
Q 012342 21 QSHIKAML-KLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIP 74 (465)
Q Consensus 21 ~GH~~P~l-~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~ 74 (465)
.|=+.-++ .|+..|+++||+||+++...+...- ...+.+++...+|
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~--------~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK--------EFEYNGVRLVYIP 62 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC--------CcccCCeEEEEeC
Confidence 55555444 5888899999999999875433111 1234477877776
No 324
>PLN02275 transferase, transferring glycosyl groups
Probab=25.24 E-value=2.1e+02 Score=28.25 Aligned_cols=58 Identities=12% Similarity=-0.051 Sum_probs=39.6
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCC-EEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGF-HITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPD 75 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh-~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~ 75 (465)
-++.++..|-.|.-.-+..++..|+++|| +|++++.+......+.. ...+++...++.
T Consensus 5 ~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~-------~~~~v~v~r~~~ 63 (371)
T PLN02275 5 GRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALL-------NHPSIHIHLMVQ 63 (371)
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHh-------cCCcEEEEECCC
Confidence 35566666888888999999999999986 79999864432111111 123677777764
No 325
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=25.13 E-value=1.3e+02 Score=27.61 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=31.4
Q ss_pred EEEEEcCC--CCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 12 HAVCIPSP--FQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 12 ~il~~~~~--~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
+|.++++| +-|-..-.-.|+..|+.+|++|.++-.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~ 39 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDF 39 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEec
Confidence 77888885 999999999999999999999999854
No 326
>PRK07064 hypothetical protein; Provisional
Probab=25.06 E-value=4e+02 Score=27.97 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=22.6
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P 369 (465)
..+++++|.|-| .+.+|...++|+|++-
T Consensus 66 ~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 66 GLGVALTSTGTGAGNAAGALVEALTAGTPLLHIT 99 (544)
T ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 345599998854 7789999999999884
No 327
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=25.05 E-value=1.5e+02 Score=27.47 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
.++|+++..=-.==..-+-.....|+++||+|++++-
T Consensus 10 ~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 10 PLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred CCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 5677766521111123455666778999999999875
No 328
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.05 E-value=1.5e+02 Score=30.11 Aligned_cols=73 Identities=19% Similarity=0.369 Sum_probs=59.3
Q ss_pred hhcCCCcceeeecCCch--------------hHHHHHhcCCcEEec-----CCCCChhhHHHhhcccceeE-EEEecCCC
Q 012342 337 VLKHPSIGGFLTHCGWN--------------SIVESLCSGVPMICW-----PFTGDQPTNGRYVCNEWGVG-MEINGDDE 396 (465)
Q Consensus 337 ~l~~~~~~~~i~hgG~~--------------s~~eal~~GvP~i~~-----P~~~DQ~~na~~~~~~~g~g-~~~~~~~~ 396 (465)
|--|+-+|.+||-=|.- ++.|.-.-|+|.|++ |...+-..-+..+.+++++- +.+.. .
T Consensus 141 I~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc--~ 218 (492)
T PF09547_consen 141 ITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNC--E 218 (492)
T ss_pred eccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeeh--H
Confidence 44588889999988743 677888999999986 66777777788887889996 45677 8
Q ss_pred CCCHHHHHHHHHHHh
Q 012342 397 DVIRNEVEKLVREMM 411 (465)
Q Consensus 397 ~~~~~~l~~ai~~~l 411 (465)
.++.++|.+.++++|
T Consensus 219 ~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 219 QLREEDITRILEEVL 233 (492)
T ss_pred HcCHHHHHHHHHHHH
Confidence 899999999999986
No 329
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.86 E-value=4.7e+02 Score=25.43 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=59.0
Q ss_pred chhhhhhhcccCCCCceeEEeecc---cc-CCC--HHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccC
Q 012342 252 EETECLQWLDCKEPKSVIYVNFGS---FI-FMN--KQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEK 325 (465)
Q Consensus 252 ~~~~l~~~l~~~~~~~~V~vs~GS---~~-~~~--~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (465)
++++..+-|.-.+..+.|.+-+=| .- ... .+....+++-|++-| ++.+..... . ....++. +|
T Consensus 168 pd~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g---iV~ipr~~~------~-~eife~~-~n 236 (346)
T COG1817 168 PDPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG---IVLIPREKE------Q-AEIFEGY-RN 236 (346)
T ss_pred CCHHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCc---EEEecCchh------H-HHHHhhh-cc
Confidence 344555555554545677655544 32 112 233666888888777 444443221 1 1111121 22
Q ss_pred ceE-eeccChhhhhcCCCcceeeecCCchhHHHHHhcCCcEEecC
Q 012342 326 GFV-ASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWP 369 (465)
Q Consensus 326 ~~v-~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P 369 (465)
+.+ ..-++..++|-.++. +|+-||- ---||..-|+|.|.+=
T Consensus 237 ~i~pk~~vD~l~Llyya~l--vig~ggT-MarEaAlLGtpaIs~~ 278 (346)
T COG1817 237 IIIPKKAVDTLSLLYYATL--VIGAGGT-MAREAALLGTPAISCY 278 (346)
T ss_pred ccCCcccccHHHHHhhhhe--eecCCch-HHHHHHHhCCceEEec
Confidence 222 455677889999998 8865542 3359999999999763
No 330
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=24.85 E-value=1.5e+02 Score=28.99 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=33.8
Q ss_pred CCEEEE--EcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 10 KVHAVC--IPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 10 ~~~il~--~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
-+-|.+ ++.|+.|-.--.+.|++.|.++|++|.+++-.+
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 356677 789999999999999999999999999997544
No 331
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=24.78 E-value=3.1e+02 Score=23.88 Aligned_cols=102 Identities=21% Similarity=0.184 Sum_probs=59.0
Q ss_pred CceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcce
Q 012342 266 KSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGG 345 (465)
Q Consensus 266 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~ 345 (465)
+.+-.+++|.+. .++++-++..|.+++..-+... +.. ..... ...+.+-.++|+.+++
T Consensus 37 ~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~---------~~~--~~~~~--~~~~~~l~ell~~aDi-- 94 (178)
T PF02826_consen 37 KTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK---------PEE--GADEF--GVEYVSLDELLAQADI-- 94 (178)
T ss_dssp SEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH---------HHH--HHHHT--TEEESSHHHHHHH-SE--
T ss_pred CEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC---------hhh--hcccc--cceeeehhhhcchhhh--
Confidence 457788888876 4566666777888776655321 111 00111 2366788899999999
Q ss_pred eeecCCchhHHHHHhcCCcEEecCCCC--ChhhHHHhhcccceeE-EEEecCC-CCCCHHHHHHHHH
Q 012342 346 FLTHCGWNSIVESLCSGVPMICWPFTG--DQPTNGRYVCNEWGVG-MEINGDD-EDVIRNEVEKLVR 408 (465)
Q Consensus 346 ~i~hgG~~s~~eal~~GvP~i~~P~~~--DQ~~na~~~~~~~g~g-~~~~~~~-~~~~~~~l~~ai~ 408 (465)
++.|+ |... .+..|+..+ +.++=| +-+...+ +.+++++|.++++
T Consensus 95 v~~~~------------------plt~~T~~li~~~~l-~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 95 VSLHL------------------PLTPETRGLINAEFL-AKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp EEE-S------------------SSSTTTTTSBSHHHH-HTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhh------------------ccccccceeeeeeee-eccccceEEEeccchhhhhhhHHHHHHh
Confidence 88886 4433 456677777 544433 3343322 5677777777765
No 332
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.74 E-value=36 Score=29.82 Aligned_cols=31 Identities=13% Similarity=0.364 Sum_probs=20.5
Q ss_pred CCcceeeecCCchhHHHHHhcCCcEEecCCCC
Q 012342 341 PSIGGFLTHCGWNSIVESLCSGVPMICWPFTG 372 (465)
Q Consensus 341 ~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~ 372 (465)
..+..+|++||......... ++|+|-+|...
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 33344999999888888877 99999999854
No 333
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=24.68 E-value=1.3e+02 Score=27.82 Aligned_cols=42 Identities=5% Similarity=-0.046 Sum_probs=30.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHH
Q 012342 13 AVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLL 54 (465)
Q Consensus 13 il~~~~~~~GH~~P~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~ 54 (465)
|++--.|+.+=+.=.+.|.+.|.++ |++|.++.++.-.+.+.
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~ 45 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVR 45 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHh
Confidence 4444444444447889999999999 99999998866444443
No 334
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=24.68 E-value=1.2e+02 Score=25.30 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=26.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhh
Q 012342 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 13 il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~ 56 (465)
|+++-.|+.|- -+|..|+++||+|++++.....+.+.+.
T Consensus 1 I~I~G~GaiG~-----~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 1 ILIIGAGAIGS-----LYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp EEEESTSHHHH-----HHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred CEEECcCHHHH-----HHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 45555566654 3688999999999999986633444444
No 335
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=24.59 E-value=1.2e+02 Score=24.93 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=27.0
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHh--CCCCEEEEEc
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVN--SNHPFLWIIR 303 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~--~~~~~l~~~~ 303 (465)
.+++++|||......+.+..+.+.+++ .+..+-|+..
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 489999999986555667788888864 3456666654
No 336
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=24.56 E-value=2.6e+02 Score=29.74 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=23.3
Q ss_pred CcceeeecCCch------hHHHHHhcCCcEEecCC
Q 012342 342 SIGGFLTHCGWN------SIVESLCSGVPMICWPF 370 (465)
Q Consensus 342 ~~~~~i~hgG~~------s~~eal~~GvP~i~~P~ 370 (465)
..+++++|.|-| .+++|...++|+|++--
T Consensus 76 ~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G 110 (585)
T CHL00099 76 KVGVCFATSGPGATNLVTGIATAQMDSVPLLVITG 110 (585)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 345589998855 78899999999999953
No 337
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.43 E-value=2.4e+02 Score=19.37 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhcCCCC
Q 012342 419 MRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLSNKHN 458 (465)
Q Consensus 419 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 458 (465)
-.+.+.++++.+. +|=||-.++.-...+|++..+..
T Consensus 13 QQ~AVE~Iq~lMa----eGmSsGEAIa~VA~elRe~hk~~ 48 (60)
T COG3140 13 QQKAVERIQELMA----EGMSSGEAIALVAQELRENHKGE 48 (60)
T ss_pred HHHHHHHHHHHHH----ccccchhHHHHHHHHHHHHhccc
Confidence 4556667777766 46677777777777777765443
No 338
>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]
Probab=24.40 E-value=1.8e+02 Score=22.03 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=32.2
Q ss_pred cEEecCCCCChhh-HHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 364 PMICWPFTGDQPT-NGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 364 P~i~~P~~~DQ~~-na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
|+++-=..+=||. ||+.- .|+-..+.- ..+++++|.+++.++..
T Consensus 51 PILIREcSgVqPrl~ARY~---~G~E~~v~L--~~~s~~~i~kale~l~k 95 (97)
T KOG3446|consen 51 PILIRECSGVQPRLWARYG---NGVERSVSL--ANLSAPQIHKALENLGK 95 (97)
T ss_pred cEeehhhcCCchHHHHHhc---CCceEEeeh--hhcchHHHHHHHHHHhc
Confidence 5555555666776 66653 577777766 78999999999998864
No 339
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=24.36 E-value=1.2e+02 Score=26.21 Aligned_cols=35 Identities=20% Similarity=0.044 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~ 49 (465)
..+|.++-|+++||. .|.-|.+.|++|++..-+..
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTC
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCC
Confidence 458999999999996 47899999999999876554
No 340
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.24 E-value=3.8e+02 Score=28.54 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=22.7
Q ss_pred CcceeeecCCc------hhHHHHHhcCCcEEecCC
Q 012342 342 SIGGFLTHCGW------NSIVESLCSGVPMICWPF 370 (465)
Q Consensus 342 ~~~~~i~hgG~------~s~~eal~~GvP~i~~P~ 370 (465)
..+++++|.|- +.+.+|...++|+|++.-
T Consensus 84 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G 118 (587)
T PRK06965 84 KVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISG 118 (587)
T ss_pred CCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEec
Confidence 34458888884 467899999999999963
No 341
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=24.22 E-value=4.6e+02 Score=25.98 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=67.8
Q ss_pred CceEeeccChhhhh-cCCCcceeeecC---Cch-hHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCC
Q 012342 325 KGFVASWCPQEEVL-KHPSIGGFLTHC---GWN-SIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVI 399 (465)
Q Consensus 325 ~~~v~~~~p~~~~l-~~~~~~~~i~hg---G~~-s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~ 399 (465)
+..+.+-.+-.+.| .|.|+ +|+|= |.| --.|+++.|-|+|- |+..+ .+ +|..- ...+
T Consensus 254 kasfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLVH---------NS~~l-~d--~GYYY----~~fD 315 (364)
T PF10933_consen 254 KASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLVH---------NSPLL-KD--VGYYY----PDFD 315 (364)
T ss_pred eeEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCccc---------Ccchh-cc--cCcCC----CCcc
Confidence 34455666665544 47788 99994 344 34699999999996 88888 53 77655 5566
Q ss_pred HHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 012342 400 RNEVEKLVREMME--GEKGKQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEI 451 (465)
Q Consensus 400 ~~~l~~ai~~~l~--~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 451 (465)
..+=.+++.+++. |..-+.|+++|+++=..+. -....+++.+.+.|
T Consensus 316 ~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~------p~n~~nv~~y~~~L 363 (364)
T PF10933_consen 316 AFEGARQLLRAIREHDADLDAYRARARRLLDRLS------PENPANVRAYEARL 363 (364)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhC------CCCHHHHHHHHHhh
Confidence 6666666666664 4445679999999866554 22445666555443
No 342
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=24.14 E-value=1.3e+02 Score=29.42 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=27.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhC-CCEEEEEeCC
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHK-GFHITFVNTE 47 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~r-Gh~Vt~~t~~ 47 (465)
||++++ |++.+..=+-.|.+.|.++ |+++.++.+.
T Consensus 1 ~i~~~~-gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg 36 (363)
T cd03786 1 KILVVT-GTRPEYIKLAPLIRALKKDPGFELVLVVTG 36 (363)
T ss_pred CEEEEE-ecCHHHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 355555 7888888888888999998 9999975553
No 343
>PRK11380 hypothetical protein; Provisional
Probab=24.06 E-value=2.3e+02 Score=27.65 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=45.6
Q ss_pred hhhhhcCCCcceeeecCCchhHHHH------------HhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHH
Q 012342 334 QEEVLKHPSIGGFLTHCGWNSIVES------------LCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRN 401 (465)
Q Consensus 334 ~~~~l~~~~~~~~i~hgG~~s~~ea------------l~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~ 401 (465)
|...|.-.++ --.-||||..+.|. -+++.|++..++ -+... ..+.+.||| .++|
T Consensus 117 q~r~L~L~aV-ya~~~g~~~etLet~p~~~~~g~~~~~~~~lp~~~~~i-~~er~--~~L~~~WGI----------~drE 182 (353)
T PRK11380 117 KRQALQLIAV-YRFYHGQWSETLEFWPRKPRPGKDTFQYHVLPFDSIDI-ISKRR--ESLEDDWGI----------EDSE 182 (353)
T ss_pred HHHHHHHhhH-HHHHhhhhhhhhhccccccccccccccccccccccccc-hhhhH--HHHHhccCC----------CCHH
Confidence 3444443333 14567888887777 567778777777 33332 233345554 4789
Q ss_pred HHHHHHHHHhcCChHHHHHH
Q 012342 402 EVEKLVREMMEGEKGKQMRN 421 (465)
Q Consensus 402 ~l~~ai~~~l~~~~~~~~~~ 421 (465)
...+.|..+++++.+..+-.
T Consensus 183 sai~tL~~L~~~GH~A~~f~ 202 (353)
T PRK11380 183 GYCALMEHLLSGDHGANTFK 202 (353)
T ss_pred HHHHHHHHHHhCCchhhhHH
Confidence 99999999888765333333
No 344
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.98 E-value=83 Score=30.54 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=26.4
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|+|.++..|+.|- .+|..|++.||+|+++..
T Consensus 1 MkI~IiGaGa~G~-----ala~~L~~~g~~V~l~~r 31 (326)
T PRK14620 1 MKISILGAGSFGT-----AIAIALSSKKISVNLWGR 31 (326)
T ss_pred CEEEEECcCHHHH-----HHHHHHHHCCCeEEEEec
Confidence 4788998888874 678999999999999875
No 345
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.77 E-value=3.7e+02 Score=24.13 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceeeecCCchhHHHHHhcC
Q 012342 283 QLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFLTHCGWNSIVESLCSG 362 (465)
Q Consensus 283 ~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i~hgG~~s~~eal~~G 362 (465)
.=.++.+.|...+..+++..|.-. .+.+.|.++.+.+ -|--||++ .=.++|..+..+|+.+|
T Consensus 67 ~d~~l~~~l~~~~~dlvvLAGyMr------IL~~~fl~~~~gr----------IlNIHPSL--LP~f~G~h~~~~A~~aG 128 (200)
T COG0299 67 FDRALVEALDEYGPDLVVLAGYMR------ILGPEFLSRFEGR----------ILNIHPSL--LPAFPGLHAHEQALEAG 128 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEcchHH------HcCHHHHHHhhcc----------eEecCccc--ccCCCCchHHHHHHHcC
Confidence 344588999999999888877432 2556666554332 23348888 88899999999999999
Q ss_pred CcEEecCCCC-C-hhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHH
Q 012342 363 VPMICWPFTG-D-QPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREM 410 (465)
Q Consensus 363 vP~i~~P~~~-D-Q~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~ 410 (465)
+..-++-.+. | .-+-.--+ . ...+.+.. ++ |.|+|.+.|.+.
T Consensus 129 ~k~sG~TVH~V~e~vD~GpII-~--Q~~Vpv~~--~D-t~etl~~RV~~~ 172 (200)
T COG0299 129 VKVSGCTVHFVTEGVDTGPII-A--QAAVPVLP--GD-TAETLEARVLEQ 172 (200)
T ss_pred CCccCcEEEEEccCCCCCCeE-E--EEeeeecC--CC-CHHHHHHHHHHH
Confidence 9987766533 2 22222222 2 22234443 33 788888877654
No 346
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=23.72 E-value=1.1e+02 Score=29.77 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=39.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhh
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~~ 56 (465)
|||++-..+.||+.=...+.+.|.+. +.+|+|++.+.+.+.++..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~ 47 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM 47 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC
Confidence 58999999999999999999999997 9999999987776655543
No 347
>PRK04148 hypothetical protein; Provisional
Probab=23.59 E-value=1.6e+02 Score=24.60 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
..+|+.+..| .| ..+|..|++.||+|+.+=.
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi 47 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDI 47 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEEC
Confidence 4689999988 54 3468889999999998743
No 348
>PRK06270 homoserine dehydrogenase; Provisional
Probab=23.58 E-value=5e+02 Score=25.43 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=34.3
Q ss_pred ChhhhhcCCCcceeee------cCC---chhHHHHHhcCCcEEe---cCCCCChhhHHHhhcccceeEEEE
Q 012342 333 PQEEVLKHPSIGGFLT------HCG---WNSIVESLCSGVPMIC---WPFTGDQPTNGRYVCNEWGVGMEI 391 (465)
Q Consensus 333 p~~~~l~~~~~~~~i~------hgG---~~s~~eal~~GvP~i~---~P~~~DQ~~na~~~~~~~g~g~~~ 391 (465)
...++|..+++..+|- |+| ..-+.+++.+|+++|+ -|+...-..-.+.. ++.|+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A-~~~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA-KKNGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH-HHcCCEEEE
Confidence 4466776554444665 443 4456899999999999 47744333333322 555665544
No 349
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=23.52 E-value=2.2e+02 Score=26.32 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=36.0
Q ss_pred EEEEcC-CCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012342 13 AVCIPS-PFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 13 il~~~~-~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~ 55 (465)
|.|.+. |+-|-..-.+.||.+|+++|-.|+++=..++......
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW 47 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH
Confidence 444444 8999999999999999999999999988887755544
No 350
>PRK05876 short chain dehydrogenase; Provisional
Probab=23.47 E-value=1.4e+02 Score=28.04 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=23.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEe
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t 45 (465)
|.++++ |+.|.+- ..+|+.|+++|++|.++.
T Consensus 7 k~vlVT-Gas~gIG--~ala~~La~~G~~Vv~~~ 37 (275)
T PRK05876 7 RGAVIT-GGASGIG--LATGTEFARRGARVVLGD 37 (275)
T ss_pred CEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEe
Confidence 566666 5556554 678999999999998765
No 351
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=23.29 E-value=1e+02 Score=30.13 Aligned_cols=45 Identities=9% Similarity=-0.004 Sum_probs=39.8
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhC--CCEEEEEeCCcchHHHHhh
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRLLKA 56 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~r--Gh~Vt~~t~~~~~~~~~~~ 56 (465)
|||++-..+.|++.=...+.+.|.++ +.+|++++.+.+.+.++..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~ 47 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN 47 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC
Confidence 58999999999999999999999996 8999999998887666543
No 352
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=23.22 E-value=1.1e+02 Score=28.93 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=16.4
Q ss_pred HHHHHHHhCCCEEEEEeCC
Q 012342 29 KLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 29 ~La~~L~~rGh~Vt~~t~~ 47 (465)
.+|..|++.||+|+++.-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788899999999999864
No 353
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=23.02 E-value=72 Score=32.08 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=22.5
Q ss_pred CCCccHHHHH---HHHHHHHhCCCEEEEEeCCc
Q 012342 19 PFQSHIKAML---KLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 19 ~~~GH~~P~l---~La~~L~~rGh~Vt~~t~~~ 48 (465)
|-.||+.|++ .+++-+..+||+|.++|+..
T Consensus 14 lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 14 LHLGHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 3579999887 46777778899999998743
No 354
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=23.00 E-value=4.2e+02 Score=24.46 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=31.4
Q ss_pred hhhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEE
Q 012342 254 TECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWI 301 (465)
Q Consensus 254 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~ 301 (465)
+.+.+|+...+ .++||-.-|......+.+....+++++.|..+...
T Consensus 22 ~~~~~~~~~~~--~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l 67 (233)
T PRK05282 22 PLIAELLAGRR--KAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGI 67 (233)
T ss_pred HHHHHHHcCCC--eEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence 34566776333 48999877765444556777899999999885543
No 355
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.00 E-value=1.3e+02 Score=30.17 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHH
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLL 54 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~ 54 (465)
..||++.-.|+.|= .-.+.+.+.|.+.|++|.++.++.-.+.+.
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 45888888787665 448999999999999999998876554443
No 356
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=22.91 E-value=1.2e+02 Score=24.28 Aligned_cols=69 Identities=10% Similarity=0.170 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEee-------ccChhhhh---cCCCcceeeec
Q 012342 280 NKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVAS-------WCPQEEVL---KHPSIGGFLTH 349 (465)
Q Consensus 280 ~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------~~p~~~~l---~~~~~~~~i~h 349 (465)
+.+....+++++++.|.+.+.+...... . ....+..+..+..+ |+....|+ ..- ++...|
T Consensus 10 rGeia~r~~ra~r~~Gi~tv~v~s~~d~------~--s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~--g~~~i~ 79 (110)
T PF00289_consen 10 RGEIAVRIIRALRELGIETVAVNSNPDT------V--STHVDMADEAYFEPPGPSPESYLNIEAIIDIARKE--GADAIH 79 (110)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEEEGGGT------T--GHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHT--TESEEE
T ss_pred CCHHHHHHHHHHHHhCCcceeccCchhc------c--cccccccccceecCcchhhhhhccHHHHhhHhhhh--cCcccc
Confidence 4455777999999999999988875421 1 11123345555544 55554433 333 448899
Q ss_pred CCchhHHHH
Q 012342 350 CGWNSIVES 358 (465)
Q Consensus 350 gG~~s~~ea 358 (465)
+|+|-..|.
T Consensus 80 pGyg~lse~ 88 (110)
T PF00289_consen 80 PGYGFLSEN 88 (110)
T ss_dssp STSSTTTTH
T ss_pred cccchhHHH
Confidence 999866655
No 357
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.74 E-value=99 Score=28.33 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=24.3
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|+|+++..+-.| ..+|+.|.+.||+|+.+-.
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~ 31 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDR 31 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEc
Confidence 356666666555 6799999999999999864
No 358
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.72 E-value=2.6e+02 Score=24.21 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=27.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCc-chHHHHhh
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF-NHRRLLKA 56 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~-~~~~~~~~ 56 (465)
.+++++ +.||+.| |+..|.++|.+|..+..+. ....+..+
T Consensus 108 ~~vLvS--gD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L~~a 148 (160)
T TIGR00288 108 AVALVT--RDADFLP---VINKAKENGKETIVIGAEPGFSTALQNS 148 (160)
T ss_pred EEEEEe--ccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHHHHh
Confidence 344444 6777665 5678889999999998654 44455544
No 359
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=22.70 E-value=6.4e+02 Score=23.59 Aligned_cols=138 Identities=13% Similarity=0.178 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCCCc-------CCCchhHHHHhccCceEeeccChhhhhcCC--Cc----ceeeec
Q 012342 283 QLIEVAMGLVNSNHPFLWIIRPDLVTGET-------ADLPAEFEVKAKEKGFVASWCPQEEVLKHP--SI----GGFLTH 349 (465)
Q Consensus 283 ~~~~~~~al~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~--~~----~~~i~h 349 (465)
.+..++..|+..+.+||+-...-.....+ ..+..++ +..|+|+.+.-=-....+++.. +- ..-||.
T Consensus 93 ~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgl-e~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~ 171 (249)
T PF05673_consen 93 DLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGL-EARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHP 171 (249)
T ss_pred cHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcc-ccCCCcEEEEEecchhhccchhhhhccCCCccccCc
Confidence 36668888888888988877643221111 0111121 2337787774433333343321 00 001222
Q ss_pred CCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCC----hHHHHHHHHHH
Q 012342 350 CGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE----KGKQMRNKAME 425 (465)
Q Consensus 350 gG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~----~~~~~~~~a~~ 425 (465)
. =++.|.++ +++++|+-+.. ..++.++-.+.|+..+... +.+.++.+|.+
T Consensus 172 ~--d~~eEklS--------------------LsDRFGL~l~F----~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~ 225 (249)
T PF05673_consen 172 S--DTIEEKLS--------------------LSDRFGLWLSF----YPPDQEEYLAIVRHYAERYGLELDEEELRQEALQ 225 (249)
T ss_pred c--hHHHHHHh--------------------HHHhCCcEEEe----cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 1 13333333 24777887766 4578888888888877311 12357788877
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHh
Q 012342 426 WKGLAEEAAAPHGSSSLNLDKLVNEILL 453 (465)
Q Consensus 426 l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 453 (465)
++.. .||.|-+....|++.+..
T Consensus 226 wa~~------rg~RSGRtA~QF~~~l~g 247 (249)
T PF05673_consen 226 WALR------RGGRSGRTARQFIDDLAG 247 (249)
T ss_pred HHHH------cCCCCHHHHHHHHHHHhc
Confidence 7543 688899999999998753
No 360
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.66 E-value=2.3e+02 Score=27.18 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=38.8
Q ss_pred hhhcCCCcceeeecCCchhHHHHHh----cCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHh
Q 012342 336 EVLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 336 ~~l~~~~~~~~i~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l 411 (465)
.+...+++ +|+-||=||++.++. .++|++++-.. + +|. + -.++.+++.+++.+++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------~----lGF---L----t~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG--------H----LGF---L----TDITVDEAEKFFQAFF 118 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------C----ccc---C----CcCCHHHHHHHHHHHH
Confidence 33345677 999999999998865 37788875431 1 111 2 3356788888888887
Q ss_pred cCC
Q 012342 412 EGE 414 (465)
Q Consensus 412 ~~~ 414 (465)
+++
T Consensus 119 ~g~ 121 (287)
T PRK14077 119 QGE 121 (287)
T ss_pred cCC
Confidence 654
No 361
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=22.63 E-value=1.4e+02 Score=26.03 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=30.1
Q ss_pred hcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHH
Q 012342 360 CSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVRE 409 (465)
Q Consensus 360 ~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ 409 (465)
..|+|---+=++-|+..|-..+ .++||--.+-+ +.+|.+.+.+.+++
T Consensus 119 ~tgI~y~eMlFFDDe~~N~~~v-~~lGV~~v~v~--~Glt~~~~~~gL~~ 165 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDESRNIEVV-SKLGVTCVLVP--DGLTWDEFERGLEK 165 (169)
T ss_dssp HH---GGGEEEEES-HHHHHHH-HTTT-EEEE-S--SS--HHHHHHHHHH
T ss_pred hcCCChhHEEEecCchhcceee-EecCcEEEEeC--CCCCHHHHHHHHHH
Confidence 5677665555678999999987 77999766655 67899999988865
No 362
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=22.62 E-value=2.4e+02 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=23.7
Q ss_pred eeEEeeccccCCCHHHHHHHHHHHHhC--CCCEEEE
Q 012342 268 VIYVNFGSFIFMNKQQLIEVAMGLVNS--NHPFLWI 301 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~l~~ 301 (465)
+|+++.||........+..+.+.+++. +..+-++
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~a 37 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELA 37 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 789999998754456778888888654 3444444
No 363
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=22.53 E-value=1.8e+02 Score=23.94 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 012342 8 CSKVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (465)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~ 49 (465)
.++++|.|+-.|=-| ..|++.|.++||.|+-+.....
T Consensus 8 ~~~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 8 AARLKIGIIGAGRVG-----TALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp ----EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSCHH
T ss_pred CCccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCc
Confidence 348999999988766 4789999999999988866543
No 364
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=22.46 E-value=1e+02 Score=24.28 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCccH--HHHHHHHHHHHhCCCEEEEEeCCcchHHHHh
Q 012342 20 FQSHI--KAMLKLAKLLHHKGFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 20 ~~GH~--~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~ 55 (465)
...++ .|.+.|++.|.++|.+|.++=|--.......
T Consensus 10 n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~ 47 (106)
T PF03720_consen 10 NTDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKE 47 (106)
T ss_dssp TSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHh
Confidence 34455 7999999999999999998866444444433
No 365
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.31 E-value=2.5e+02 Score=26.99 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=40.4
Q ss_pred hhcCCCcceeeecCCchhHHHHHh----cCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhc
Q 012342 337 VLKHPSIGGFLTHCGWNSIVESLC----SGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMME 412 (465)
Q Consensus 337 ~l~~~~~~~~i~hgG~~s~~eal~----~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~ 412 (465)
+...+++ +|+=||=||++.+.+ .++|++++-.. .+|. + -.++.+++.++|.++++
T Consensus 65 ~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~lGF---L----~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 65 LGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG------------HLGF---L----TQIPREYMTDKLLPVLE 123 (296)
T ss_pred cCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC------------CCeE---e----eccCHHHHHHHHHHHHc
Confidence 3345677 999999999999974 47898886431 1222 2 23578889999999887
Q ss_pred CC
Q 012342 413 GE 414 (465)
Q Consensus 413 ~~ 414 (465)
++
T Consensus 124 g~ 125 (296)
T PRK04539 124 GK 125 (296)
T ss_pred CC
Confidence 54
No 366
>PRK10637 cysG siroheme synthase; Provisional
Probab=22.22 E-value=8.6e+02 Score=24.93 Aligned_cols=151 Identities=9% Similarity=0.070 Sum_probs=78.0
Q ss_pred hcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHh-ccCceEeeccChhhh
Q 012342 259 WLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFVASWCPQEEV 337 (465)
Q Consensus 259 ~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~p~~~~ 337 (465)
|++-.. +.+++|+-|.... .-++.|.+.|..+.++.. . +.+++.+-. ..++....---+...
T Consensus 7 ~~~l~~-~~vlvvGgG~vA~-------rk~~~ll~~ga~v~visp-~--------~~~~~~~l~~~~~i~~~~~~~~~~d 69 (457)
T PRK10637 7 FCQLRD-RDCLLVGGGDVAE-------RKARLLLDAGARLTVNAL-A--------FIPQFTAWADAGMLTLVEGPFDESL 69 (457)
T ss_pred EEEcCC-CEEEEECCCHHHH-------HHHHHHHHCCCEEEEEcC-C--------CCHHHHHHHhCCCEEEEeCCCChHH
Confidence 444433 5688888776541 223455556777666543 2 334443321 234443322224455
Q ss_pred hcCCCcceeeecCCchhHHHHHh-----cCCcEEecCCCCChhhHHH-----hhcccceeEEEEecCC-CCCCHHHHHHH
Q 012342 338 LKHPSIGGFLTHCGWNSIVESLC-----SGVPMICWPFTGDQPTNGR-----YVCNEWGVGMEINGDD-EDVIRNEVEKL 406 (465)
Q Consensus 338 l~~~~~~~~i~hgG~~s~~eal~-----~GvP~i~~P~~~DQ~~na~-----~~~~~~g~g~~~~~~~-~~~~~~~l~~a 406 (465)
|....+ +|.--+--.+.+.++ .|+++-+ .|++..+. .+ ++-++-+.+.+.. .-.-...|++.
T Consensus 70 l~~~~l--v~~at~d~~~n~~i~~~a~~~~~lvN~----~d~~~~~~f~~pa~~-~~g~l~iaisT~G~sP~~a~~lr~~ 142 (457)
T PRK10637 70 LDTCWL--AIAATDDDAVNQRVSEAAEARRIFCNV----VDAPKAASFIMPSII-DRSPLMVAVSSGGTSPVLARLLREK 142 (457)
T ss_pred hCCCEE--EEECCCCHHHhHHHHHHHHHcCcEEEE----CCCcccCeEEEeeEE-ecCCEEEEEECCCCCcHHHHHHHHH
Confidence 666666 666666555555543 4555433 34443332 33 4434555555422 22334678888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHh
Q 012342 407 VREMMEGEKGKQMRNKAMEWKGLAEEAA 434 (465)
Q Consensus 407 i~~~l~~~~~~~~~~~a~~l~~~~~~~~ 434 (465)
|.+++.. +-..+-+...++.+.+++..
T Consensus 143 ie~~~~~-~~~~~~~~~~~~R~~~k~~~ 169 (457)
T PRK10637 143 LESLLPQ-HLGQVAKYAGQLRGRVKQQF 169 (457)
T ss_pred HHHhcch-hHHHHHHHHHHHHHHHHHhc
Confidence 8888742 32346666667777666543
No 367
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=22.17 E-value=2.2e+02 Score=26.10 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
-++++++ |+.|.+- ..+++.|+++|++|.++...
T Consensus 15 ~k~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVT-GGNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 3666666 5666665 78899999999999988654
No 368
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=22.17 E-value=5.6e+02 Score=28.54 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=91.7
Q ss_pred ceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCc----CCCchhHHHHhccCceE---eeccChhhhhc
Q 012342 267 SVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGET----ADLPAEFEVKAKEKGFV---ASWCPQEEVLK 339 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v---~~~~p~~~~l~ 339 (465)
..+|+++=.+..++....+..++.+.+.|.++++.+|.+....+. --+...-. .+....+- .+-++..++-.
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~e-d~~~~~~TG~efD~ls~~~~~~ 650 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDE-DVSSMALTGSEFDDLSDEELDD 650 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCc-cccccccchhhhhcCCHHHHHH
Confidence 589998877776777889999999999999999999865321000 00000000 00001110 11122111111
Q ss_pred CCCcceeeecCCc---hhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCChH
Q 012342 340 HPSIGGFLTHCGW---NSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGEKG 416 (465)
Q Consensus 340 ~~~~~~~i~hgG~---~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~~~ 416 (465)
.++-..++..+-- --+.|+|..---++ -+.+|--.-|-.+ +...+|+... .-..+--++|=+-+|.|+.
T Consensus 651 ~~~~~~vFaR~~P~HK~kIVeaLq~~geiv--AMTGDGVNDApAL-K~AdIGIAMG----~~GTdVaKeAsDMVL~DDn- 722 (972)
T KOG0202|consen 651 AVRRVLVFARAEPQHKLKIVEALQSRGEVV--AMTGDGVNDAPAL-KKADIGIAMG----ISGTDVAKEASDMVLADDN- 722 (972)
T ss_pred HhhcceEEEecCchhHHHHHHHHHhcCCEE--EecCCCccchhhh-hhcccceeec----CCccHhhHhhhhcEEecCc-
Confidence 1111113444332 23556665544443 4567776667677 7777777773 2233334445555677765
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Q 012342 417 KQMRNKAMEWKGLAEEAAAPHGSSSLNLDKLVNEILLS 454 (465)
Q Consensus 417 ~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 454 (465)
+..- -+|++||-+..+++..||+.+...
T Consensus 723 --FstI--------vaAVEEGr~IynNik~Fir~~lSs 750 (972)
T KOG0202|consen 723 --FSTI--------VAAVEEGRAIYNNIKNFIRYLLSS 750 (972)
T ss_pred --HHHH--------HHHHHHhHHHHHHHHHHHHHHHhh
Confidence 4332 224556777889999999877653
No 369
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=22.07 E-value=1.9e+02 Score=28.68 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-------CCcCCCchhHHHHhccCceEeeccChhh---hhcCCCcc
Q 012342 275 SFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVT-------GETADLPAEFEVKAKEKGFVASWCPQEE---VLKHPSIG 344 (465)
Q Consensus 275 S~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~p~~~---~l~~~~~~ 344 (465)
|.+......+..+++++++.+.++...+..+... +.....+.....+-.=.+.+.+|++|.+ +|-.|++
T Consensus 186 SLF~Ye~~al~~ll~~~~~~~~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~- 264 (371)
T TIGR03837 186 SLFCYENAALPALLDALAQSGSPVHLLVPEGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDL- 264 (371)
T ss_pred EEEecCChhHHHHHHHHHhCCCCeEEEecCCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChh-
Q ss_pred eeeecCCchhHHHHHhcCCcEE
Q 012342 345 GFLTHCGWNSIVESLCSGVPMI 366 (465)
Q Consensus 345 ~~i~hgG~~s~~eal~~GvP~i 366 (465)
=+-. |=-|..-|..+|+|+|
T Consensus 265 -NfVR-GEDSFVRAqWAgkPfv 284 (371)
T TIGR03837 265 -NFVR-GEDSFVRAQWAGKPFV 284 (371)
T ss_pred -cEee-chhHHHHHHHcCCCce
No 370
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=21.95 E-value=2.7e+02 Score=23.85 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=21.0
Q ss_pred ceeeecCCch----hHHHHH-hcCCcEEecCCCC
Q 012342 344 GGFLTHCGWN----SIVESL-CSGVPMICWPFTG 372 (465)
Q Consensus 344 ~~~i~hgG~~----s~~eal-~~GvP~i~~P~~~ 372 (465)
+.++.+.|.+ .+.+|. ..++|+|++=-+.
T Consensus 61 ~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~r 94 (157)
T TIGR03845 61 AILMQSSGLGNSINALASLNKTYGIPLPILASWR 94 (157)
T ss_pred EEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 3477888855 555677 9999999987433
No 371
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=21.93 E-value=1.6e+02 Score=28.82 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=14.7
Q ss_pred hHHHHHHHcCCCeEEEcCC
Q 012342 99 FTITAAQQLGLPIVLFFTI 117 (465)
Q Consensus 99 ~~~~vA~~lgiP~v~~~~~ 117 (465)
....+|+.+++|+++...+
T Consensus 250 ~lA~~Ak~~~vPfyV~a~~ 268 (331)
T TIGR00512 250 QLAVLAKHHGVPFYVAAPT 268 (331)
T ss_pred HHHHHHHHhCCCEEEeccc
Confidence 3456789999999987654
No 372
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=21.90 E-value=2.1e+02 Score=20.99 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=28.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEe
Q 012342 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (465)
Q Consensus 13 il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t 45 (465)
+++...++.|--.-...|+..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666788889999999999999999998885
No 373
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=21.89 E-value=2.3e+02 Score=27.76 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=31.9
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhC-CCEEEEEeCCcchHHHHh
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRRLLK 55 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~r-Gh~Vt~~t~~~~~~~~~~ 55 (465)
|||++++ +++-|+.=+-.+.++|.++ +.++.++.+......+..
T Consensus 1 ~~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~ 45 (365)
T TIGR00236 1 LKVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQ 45 (365)
T ss_pred CeEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHH
Confidence 4788776 9999999999999999987 666666555433334433
No 374
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.71 E-value=1e+02 Score=31.09 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=26.3
Q ss_pred EEEEEcCC---CCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 12 HAVCIPSP---FQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 12 ~il~~~~~---~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
.+.|=|.+ -.||+.|++.| +.|++.||+|++..+.
T Consensus 36 Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd 73 (401)
T COG0162 36 YIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGD 73 (401)
T ss_pred EEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEecc
Confidence 44444443 56999999887 4699999999999763
No 375
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=21.70 E-value=86 Score=32.58 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
..+|.|+-.|.+|. .+|+.|+++||+|+++.-
T Consensus 6 ~~~IG~IGLG~MG~-----~mA~nL~~~G~~V~V~NR 37 (493)
T PLN02350 6 LSRIGLAGLAVMGQ-----NLALNIAEKGFPISVYNR 37 (493)
T ss_pred CCCEEEEeeHHHHH-----HHHHHHHhCCCeEEEECC
Confidence 66899999999884 689999999999999964
No 376
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=21.69 E-value=2.4e+02 Score=24.20 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=33.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 012342 13 AVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (465)
Q Consensus 13 il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~ 50 (465)
+++...++.|-......++..|+++|.+|.++..+.++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 57778889999999999999999999999999877654
No 377
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=21.65 E-value=1e+02 Score=28.02 Aligned_cols=31 Identities=19% Similarity=0.103 Sum_probs=23.6
Q ss_pred CEEEEEc-CCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 11 VHAVCIP-SPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 11 ~~il~~~-~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
|+|.|+- .+..| ..|++.|+++||+|+++..
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 4677774 55555 3689999999999998854
No 378
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.59 E-value=2.1e+02 Score=28.67 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=34.4
Q ss_pred hcCCcEEecCCCCChhhHHHhhcccceeE----EEEecCCCCCCHHHHHHHHHHHh
Q 012342 360 CSGVPMICWPFTGDQPTNGRYVCNEWGVG----MEINGDDEDVIRNEVEKLVREMM 411 (465)
Q Consensus 360 ~~GvP~i~~P~~~DQ~~na~~~~~~~g~g----~~~~~~~~~~~~~~l~~ai~~~l 411 (465)
-.|||+|-+-|-.|-...-..-++..|.| +.+......+++++|.+.|++.-
T Consensus 498 PRGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAe 553 (663)
T KOG0100|consen 498 PRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAE 553 (663)
T ss_pred CCCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHH
Confidence 45899999888777665554433445654 33322217899999999888763
No 379
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=21.55 E-value=1.6e+02 Score=28.84 Aligned_cols=38 Identities=5% Similarity=0.037 Sum_probs=28.4
Q ss_pred CEEEEEcC--CCCccH-HHHHHHHHHHHhC--CCEEEEEeCCc
Q 012342 11 VHAVCIPS--PFQSHI-KAMLKLAKLLHHK--GFHITFVNTEF 48 (465)
Q Consensus 11 ~~il~~~~--~~~GH~-~P~l~La~~L~~r--Gh~Vt~~t~~~ 48 (465)
|||+++.. +..|=+ .-.+.+++.|.++ ||+|++++...
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~ 43 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRND 43 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCC
Confidence 57777765 233555 4558899999999 89999988754
No 380
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=21.49 E-value=3.2e+02 Score=21.61 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=49.4
Q ss_pred eEEeeccccCC-CHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceee
Q 012342 269 IYVNFGSFIFM-NKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFL 347 (465)
Q Consensus 269 V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i 347 (465)
||++ |+.+.. ......++.++|++.+..++.-..... ... .-.....+.+ |--....+..+++-.++
T Consensus 1 IYlA-gp~F~~~~~~~~~~~~~~L~~~g~~v~~P~~~~~--~~~-~~~~~~~~~i--------~~~d~~~i~~~D~via~ 68 (113)
T PF05014_consen 1 IYLA-GPFFSEEQKARVERLREALEKNGFEVYSPQDNDE--NDE-EDSQEWAREI--------FERDLEGIRECDIVIAN 68 (113)
T ss_dssp EEEE-SGGSSHHHHHHHHHHHHHHHTTTTEEEGGCTCSS--S---TTSHHCHHHH--------HHHHHHHHHHSSEEEEE
T ss_pred CEEe-CCcCCHHHHHHHHHHHHHHHhCCCEEEecccccc--ccc-cccchHHHHH--------HHHHHHHHHHCCEEEEE
Confidence 5666 444322 234566788999998885442111010 000 0011111000 01134566677775555
Q ss_pred ecC---CchhHHHH---HhcCCcEEecCCCCCh
Q 012342 348 THC---GWNSIVES---LCSGVPMICWPFTGDQ 374 (465)
Q Consensus 348 ~hg---G~~s~~ea---l~~GvP~i~~P~~~DQ 374 (465)
-.+ +.||..|. ...|+|++++-.-..+
T Consensus 69 l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 69 LDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp ECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred CCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 555 89999996 6789999998764444
No 381
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=21.44 E-value=1.2e+02 Score=28.67 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=23.4
Q ss_pred ceeEEeeccccCCCHH-HHHHHHHHHHh--CCCCEEEEEcCC
Q 012342 267 SVIYVNFGSFIFMNKQ-QLIEVAMGLVN--SNHPFLWIIRPD 305 (465)
Q Consensus 267 ~~V~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~l~~~~~~ 305 (465)
.+++|||||......+ -+..+.+.+++ .+.++-|+..+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 3788999998754444 66667777765 478888887653
No 382
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=21.35 E-value=2.6e+02 Score=26.22 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchH
Q 012342 27 MLKLAKLLHHKGFHITFVNTEFNHR 51 (465)
Q Consensus 27 ~l~La~~L~~rGh~Vt~~t~~~~~~ 51 (465)
+.+|++.|.+ +|+|+++.|.....
T Consensus 16 i~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 16 IIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCc
Confidence 5677888864 68999999876553
No 383
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=21.35 E-value=1.3e+02 Score=30.55 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
.++|.|+-.|-.| +.+|..|+++||+|+.+-.
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 4689998777766 4689999999999999864
No 384
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=21.31 E-value=3e+02 Score=27.53 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=47.9
Q ss_pred hhhhcCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChhhHHHhhcccceeE-EEEecCCCCCCHHHHHHHHHHHhcC
Q 012342 335 EEVLKHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQPTNGRYVCNEWGVG-MEINGDDEDVIRNEVEKLVREMMEG 413 (465)
Q Consensus 335 ~~~l~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~~na~~~~~~~g~g-~~~~~~~~~~~~~~l~~ai~~~l~~ 413 (465)
..++.++++ +|. .=+=++.-|+..|+|.|++-+..=-...+ +++|+- ..+.. ..++.+.+...+.+.+.+
T Consensus 280 ~~~l~~~dl--~Vg-~R~HsaI~al~~g~p~i~i~Y~~K~~~l~----~~~gl~~~~~~i--~~~~~~~l~~~~~e~~~~ 350 (385)
T COG2327 280 GGILAACDL--IVG-MRLHSAIMALAFGVPAIAIAYDPKVRGLM----QDLGLPGFAIDI--DPLDAEILSAVVLERLTK 350 (385)
T ss_pred HHHhccCce--EEe-ehhHHHHHHHhcCCCeEEEeecHHHHHHH----HHcCCCcccccC--CCCchHHHHHHHHHHHhc
Confidence 447788886 663 12337788999999999887643222333 445552 33444 778999999999998875
Q ss_pred Ch
Q 012342 414 EK 415 (465)
Q Consensus 414 ~~ 415 (465)
-.
T Consensus 351 ~~ 352 (385)
T COG2327 351 LD 352 (385)
T ss_pred cH
Confidence 43
No 385
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=21.16 E-value=4.1e+02 Score=28.51 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=22.9
Q ss_pred CcceeeecCCc------hhHHHHHhcCCcEEecC
Q 012342 342 SIGGFLTHCGW------NSIVESLCSGVPMICWP 369 (465)
Q Consensus 342 ~~~~~i~hgG~------~s~~eal~~GvP~i~~P 369 (465)
..+++++|.|- +.+++|...++|+|++-
T Consensus 85 k~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~ 118 (616)
T PRK07418 85 KVGVCFGTSGPGATNLVTGIATAQMDSVPMVVIT 118 (616)
T ss_pred CCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 45569999884 47889999999999983
No 386
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.16 E-value=98 Score=25.11 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=45.5
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCcchHHHHhhhcCCCCCCCCCeeEEeCCCCCCCCCCCCCcccC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRLLKARGQHSLDGLPSFRFEAIPDGLPASSDESPTAQD 89 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~~~~~~~~~~~~~~~ 89 (465)
+.||+=+..|. ++.+|+.|+++|++|+..-- +..... .+++|+.=+---|.. ......+
T Consensus 14 ~gkVvEVGiG~------~~~VA~~L~e~g~dv~atDI--~~~~a~-----------~g~~~v~DDitnP~~--~iY~~A~ 72 (129)
T COG1255 14 RGKVVEVGIGF------FLDVAKRLAERGFDVLATDI--NEKTAP-----------EGLRFVVDDITNPNI--SIYEGAD 72 (129)
T ss_pred CCcEEEEccch------HHHHHHHHHHcCCcEEEEec--ccccCc-----------ccceEEEccCCCccH--HHhhCcc
Confidence 34666666553 68999999999999887633 221111 256665432111111 0001111
Q ss_pred C----CC-CCccCchHHHHHHHcCCCeEEE
Q 012342 90 A----YS-LDGFLPFTITAAQQLGLPIVLF 114 (465)
Q Consensus 90 ~----~~-~D~~~~~~~~vA~~lgiP~v~~ 114 (465)
+ .. .+ ++....++|++.|+|++..
T Consensus 73 lIYSiRpppE-l~~~ildva~aVga~l~I~ 101 (129)
T COG1255 73 LIYSIRPPPE-LQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred ceeecCCCHH-HHHHHHHHHHhhCCCEEEE
Confidence 0 00 22 3345778999999999875
No 387
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=21.09 E-value=84 Score=27.65 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=23.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 12 HAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 12 ~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
+|.++..|.+|. .+|..++.+||+|+++-...
T Consensus 1 ~V~ViGaG~mG~-----~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGR-----GIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHH-----HHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHH-----HHHHHHHhCCCcEEEEECCh
Confidence 567777777775 67888999999999997643
No 388
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=20.85 E-value=1e+02 Score=29.69 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
++|.|+..|..|. .+|..|+++||+|+++...
T Consensus 3 ~~V~VIG~G~mG~-----~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGR-----AWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHH-----HHHHHHHHCCCeeEEEeCC
Confidence 4788888777763 6788999999999999754
No 389
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=20.85 E-value=1.1e+02 Score=30.32 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNT 46 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~ 46 (465)
+.+|+++--|-.| +..|-.|+++|++|+++-.
T Consensus 4 ~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~ 35 (387)
T COG0665 4 KMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEA 35 (387)
T ss_pred cceEEEECCcHHH-----HHHHHHHHHcCCEEEEEec
Confidence 6799999988888 9999999999999999864
No 390
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=20.80 E-value=1.8e+02 Score=30.18 Aligned_cols=55 Identities=9% Similarity=0.198 Sum_probs=38.9
Q ss_pred cCCCcceeeecCCchhHHHHHhc----CCcEEecCCCCChhhHHHhhcccceeEEEEecCCCCCCHHHHHHHHHHHhcCC
Q 012342 339 KHPSIGGFLTHCGWNSIVESLCS----GVPMICWPFTGDQPTNGRYVCNEWGVGMEINGDDEDVIRNEVEKLVREMMEGE 414 (465)
Q Consensus 339 ~~~~~~~~i~hgG~~s~~eal~~----GvP~i~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~~l~~~ 414 (465)
..+++ +|+=||=||++.+... ++|++++- .-+ +|. + -.+..+++.++|.++++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN--------~G~------LGF-L----t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS--------MGS------LGF-M----TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe--------CCC------cce-e----cccCHHHHHHHHHHHHcCC
Confidence 45677 9999999999999763 56777642 111 222 3 3357889999999998765
No 391
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=20.66 E-value=5.4e+02 Score=27.35 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=21.8
Q ss_pred cceeeecCCch------hHHHHHhcCCcEEecCC
Q 012342 343 IGGFLTHCGWN------SIVESLCSGVPMICWPF 370 (465)
Q Consensus 343 ~~~~i~hgG~~------s~~eal~~GvP~i~~P~ 370 (465)
.++++.|.|-| .+++|...++|+|++.-
T Consensus 67 ~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G 100 (578)
T PRK06546 67 LAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIAS 100 (578)
T ss_pred ceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44588887744 67799999999998853
No 392
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=20.60 E-value=2.1e+02 Score=26.05 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=34.3
Q ss_pred CCEEEEEcCC-CCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 10 KVHAVCIPSP-FQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 10 ~~~il~~~~~-~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
+..|+|++=+ -.+...+.....+.|.++|++|.|++|.
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 4578888888 7999999999999999999999999986
No 393
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=20.58 E-value=6.6e+02 Score=22.96 Aligned_cols=46 Identities=13% Similarity=0.051 Sum_probs=34.4
Q ss_pred hhhhhcccCCCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEE
Q 012342 255 ECLQWLDCKEPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWI 301 (465)
Q Consensus 255 ~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~ 301 (465)
-+.+|+... .+.+.||=+-|...-....+.+..++|+..|..+.=.
T Consensus 23 ~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L 68 (224)
T COG3340 23 FIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSEL 68 (224)
T ss_pred HHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeee
Confidence 445566443 3569999998888766778888999999999876543
No 394
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=20.54 E-value=1.3e+02 Score=31.93 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=51.7
Q ss_pred ChhhhhcCCCcceeeecCC-ch-hHHHHHhcCCcEEecCCCC-ChhhHHHhh-cccceeEEEEecCCCCCCHHHHHHHHH
Q 012342 333 PQEEVLKHPSIGGFLTHCG-WN-SIVESLCSGVPMICWPFTG-DQPTNGRYV-CNEWGVGMEINGDDEDVIRNEVEKLVR 408 (465)
Q Consensus 333 p~~~~l~~~~~~~~i~hgG-~~-s~~eal~~GvP~i~~P~~~-DQ~~na~~~-~~~~g~g~~~~~~~~~~~~~~l~~ai~ 408 (465)
+..+++.-+++|.|-+-== || |-+|++..|||.|+-=..+ -++.+-..- ....|+-+.-+ ..-+.++....|.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR---~~~n~~e~v~~la 538 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDR---RDKNYDESVNQLA 538 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-S---SSS-HHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeC---CCCCHHHHHHHHH
Confidence 5667777777766655211 33 8899999999999987733 222221100 13467765544 5567777777777
Q ss_pred HHhc-----CCh-HHHHHHHHHHHHHHH
Q 012342 409 EMME-----GEK-GKQMRNKAMEWKGLA 430 (465)
Q Consensus 409 ~~l~-----~~~-~~~~~~~a~~l~~~~ 430 (465)
+.|. +.+ =...|++|+++++++
T Consensus 539 ~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 539 DFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 7663 111 124677777776553
No 395
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=20.52 E-value=1.3e+02 Score=27.03 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEe
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVN 45 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t 45 (465)
.++|+++.++..| ..+|+.|.+.||+|+++-
T Consensus 28 gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 28 GKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEc
Confidence 5689999987666 578999999999999553
No 396
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=20.45 E-value=7.5e+02 Score=23.53 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=49.1
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccC-----ceE-----eeccChhhhhcCCCcceeeecCC-chhH
Q 012342 287 VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEK-----GFV-----ASWCPQEEVLKHPSIGGFLTHCG-WNSI 355 (465)
Q Consensus 287 ~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v-----~~~~p~~~~l~~~~~~~~i~hgG-~~s~ 355 (465)
+.+.++..|-+|++.+... -|+.....+..| +.+ .++=|+-++|..++. +|.-.. .|-.
T Consensus 189 l~k~l~~~g~~~lisfSRR--------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~ 258 (329)
T COG3660 189 LVKILENQGGSFLISFSRR--------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMC 258 (329)
T ss_pred HHHHHHhCCceEEEEeecC--------CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhh
Confidence 4555677899999988754 344443333322 222 256689999998887 776665 5566
Q ss_pred HHHHhcCCcEEec
Q 012342 356 VESLCSGVPMICW 368 (465)
Q Consensus 356 ~eal~~GvP~i~~ 368 (465)
.||.+.|+|+-++
T Consensus 259 sEAasTgkPv~~~ 271 (329)
T COG3660 259 SEAASTGKPVFIL 271 (329)
T ss_pred HHHhccCCCeEEE
Confidence 7999999998764
No 397
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=20.44 E-value=2.1e+02 Score=26.47 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=29.3
Q ss_pred CEEEEEcCCCCccHHHHHHHHHHHHhCCCE-EEEE
Q 012342 11 VHAVCIPSPFQSHIKAMLKLAKLLHHKGFH-ITFV 44 (465)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~La~~L~~rGh~-Vt~~ 44 (465)
+-|+|..+|..|--.--..|.+.|+++|++ +..+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~i 36 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRI 36 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEE
Confidence 368888999999999999999999999976 4444
No 398
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=20.41 E-value=2.2e+02 Score=27.50 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
...|.+...|+-|--.=.=.|.++|.++||+|-++.-.+
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 347888888999999999999999999999999987544
No 399
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=20.25 E-value=1.7e+02 Score=29.62 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCEEEEEcC--CCCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 10 KVHAVCIPS--PFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 10 ~~~il~~~~--~~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
+++|+.+.. |+.|-..-.+.||..|+.+|++|.++=..
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 456555554 89999999999999999999999988443
No 400
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=20.23 E-value=5.1e+02 Score=26.14 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=61.9
Q ss_pred CCCceeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCce---EeeccChhh--hh
Q 012342 264 EPKSVIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGF---VASWCPQEE--VL 338 (465)
Q Consensus 264 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~p~~~--~l 338 (465)
.+||.|-+| ++.....-+..+.+.|++.|+.+++-...+... ..+ +++-+.+. |.+...+.. .|
T Consensus 183 ~~kp~I~iT---mfGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG-------~aM-E~Li~~G~~~~VlDlTttEl~d~l 251 (403)
T PF06792_consen 183 EDKPLIGIT---MFGVTTPCVDAIRERLEEEGYEVLVFHATGTGG-------RAM-ERLIREGQFDGVLDLTTTELADEL 251 (403)
T ss_pred CCCcEEEEE---CCCCcHHHHHHHHHHHHhcCCeEEEEcCCCCch-------HHH-HHHHHcCCcEEEEECcHHHHHHHH
Confidence 345678775 455566778888999999999988776544211 112 22222233 345555432 22
Q ss_pred cCCCcceeeecCCchhHHHHHhcCCcEEecCCCCChh
Q 012342 339 KHPSIGGFLTHCGWNSIVESLCSGVPMICWPFTGDQP 375 (465)
Q Consensus 339 ~~~~~~~~i~hgG~~s~~eal~~GvP~i~~P~~~DQ~ 375 (465)
+| =|..+|-.=.-.|...|+|+|+.|-..|--
T Consensus 252 ----~G-Gv~sagp~Rl~AA~~~GIP~Vvs~GalDmV 283 (403)
T PF06792_consen 252 ----FG-GVLSAGPDRLEAAARAGIPQVVSPGALDMV 283 (403)
T ss_pred ----hC-CCCCCCchHHHHHHHcCCCEEEecCcccee
Confidence 12 266788888889999999999999877743
No 401
>PRK13054 lipid kinase; Reviewed
Probab=20.23 E-value=5.6e+02 Score=24.39 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred eeEEeeccccCCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCcCCCchhHHHHhccCceEeeccChhhhhcCCCcceee
Q 012342 268 VIYVNFGSFIFMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFVASWCPQEEVLKHPSIGGFL 347 (465)
Q Consensus 268 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~l~~~~~~~~i 347 (465)
.++++ |... ..+.+.+++..|++.+..+.+..... +....+.. +.......++ +|
T Consensus 7 ~~i~N-~~~~--~~~~~~~~~~~l~~~g~~~~v~~t~~---------~~~a~~~a-----------~~~~~~~~d~--vv 61 (300)
T PRK13054 7 LLILN-GKSA--GNEELREAVGLLREEGHTLHVRVTWE---------KGDAARYV-----------EEALALGVAT--VI 61 (300)
T ss_pred EEEEC-CCcc--chHHHHHHHHHHHHcCCEEEEEEecC---------CCcHHHHH-----------HHHHHcCCCE--EE
Q ss_pred ecCCchhHHHHHhc--------CCcEEecCC
Q 012342 348 THCGWNSIVESLCS--------GVPMICWPF 370 (465)
Q Consensus 348 ~hgG~~s~~eal~~--------GvP~i~~P~ 370 (465)
.-||=||+.|++.. .+|+-++|.
T Consensus 62 v~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 62 AGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred EECCccHHHHHHHHHHhhccCCCCcEEEEeC
No 402
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=20.11 E-value=97 Score=29.84 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCccHHHHHHHHHHHHhCCCEEEEEeCC
Q 012342 10 KVHAVCIPSPFQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (465)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~ 47 (465)
.|||+++-.|+.|=+ +|..|++.|++|+++.-.
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 579999999999965 466688999999999763
No 403
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=20.02 E-value=1.3e+02 Score=25.83 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=22.7
Q ss_pred CCCCccHHHHHHHHHHHHhCCCEEEEEeCCc
Q 012342 18 SPFQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (465)
Q Consensus 18 ~~~~GH~~P~l~La~~L~~rGh~Vt~~t~~~ 48 (465)
+|+.|++-- .+++.|.++||+|+.++-..
T Consensus 4 ~GatG~vG~--~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 4 FGATGFVGR--ALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp ETTTSHHHH--HHHHHHHHTTSEEEEEESSG
T ss_pred ECCCChHHH--HHHHHHHHCCCEEEEEecCc
Confidence 366676653 58999999999999998644
Done!