Query 012343
Match_columns 465
No_of_seqs 179 out of 1380
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 01:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 100.0 8E-46 1.7E-50 405.1 41.4 330 107-439 2-383 (621)
2 PRK10669 putative cation:proto 100.0 1.7E-43 3.7E-48 383.5 42.5 328 110-439 6-391 (558)
3 PLN03159 cation/H(+) antiporte 100.0 5.6E-44 1.2E-48 400.7 38.7 342 90-440 28-441 (832)
4 PRK03659 glutathione-regulated 100.0 2.1E-43 4.5E-48 385.2 41.1 323 110-438 5-379 (601)
5 COG0475 KefB Kef-type K+ trans 100.0 2.6E-42 5.6E-47 359.2 39.1 321 109-434 5-382 (397)
6 COG4651 RosB Kef-type K+ trans 100.0 1.3E-41 2.9E-46 329.3 29.1 333 105-439 1-391 (408)
7 PRK05326 potassium/proton anti 100.0 2.4E-32 5.1E-37 296.6 34.7 322 109-435 5-386 (562)
8 KOG1650 Predicted K+/H+-antipo 100.0 5.3E-32 1.2E-36 300.6 29.2 340 94-442 12-428 (769)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 4.3E-34 9.4E-39 295.0 -1.7 313 117-434 3-376 (380)
10 TIGR00932 2a37 transporter, mo 100.0 3.2E-28 6.9E-33 241.3 26.4 219 120-342 2-273 (273)
11 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 1.1E-19 2.3E-24 199.5 32.7 287 120-408 24-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 9.8E-19 2.1E-23 188.6 34.6 279 116-401 4-363 (525)
13 COG3263 NhaP-type Na+/H+ and K 99.8 2.9E-18 6.3E-23 174.4 23.5 311 111-429 8-378 (574)
14 COG0025 NhaP NhaP-type Na+/H+ 99.8 9.4E-17 2E-21 169.1 35.4 293 109-404 5-368 (429)
15 TIGR00840 b_cpa1 sodium/hydrog 99.7 1.8E-15 3.8E-20 164.0 31.6 258 163-429 128-405 (559)
16 PRK14853 nhaA pH-dependent sod 99.5 1.1E-11 2.3E-16 129.1 28.2 237 174-437 130-396 (423)
17 KOG1965 Sodium/hydrogen exchan 99.3 1.3E-09 2.9E-14 115.9 24.4 290 109-402 34-414 (575)
18 KOG4505 Na+/H+ antiporter [Ino 99.1 2.7E-09 5.8E-14 106.3 16.2 240 163-405 127-383 (467)
19 TIGR00773 NhaA Na+/H+ antiport 99.0 6E-08 1.3E-12 99.6 22.5 202 177-405 123-344 (373)
20 PRK14856 nhaA pH-dependent sod 98.6 6.7E-06 1.5E-10 86.1 20.9 234 177-437 138-432 (438)
21 PRK09560 nhaA pH-dependent sod 98.3 8.2E-05 1.8E-09 76.9 21.7 231 177-434 130-383 (389)
22 PRK14854 nhaA pH-dependent sod 98.3 0.00011 2.5E-09 75.6 21.9 233 177-435 126-378 (383)
23 PRK09561 nhaA pH-dependent sod 98.3 9E-05 1.9E-09 76.6 21.2 232 177-435 130-383 (388)
24 PRK14855 nhaA pH-dependent sod 98.3 0.00013 2.9E-09 76.2 22.6 226 177-432 133-410 (423)
25 COG3004 NhaA Na+/H+ antiporter 98.0 0.00097 2.1E-08 67.0 20.0 230 177-436 133-386 (390)
26 PF06965 Na_H_antiport_1: Na+/ 97.9 3.6E-05 7.8E-10 79.4 8.8 219 177-423 126-369 (378)
27 TIGR00932 2a37 transporter, mo 97.4 0.018 4E-07 57.0 18.9 134 284-419 4-139 (273)
28 PRK12460 2-keto-3-deoxyglucona 97.2 0.0089 1.9E-07 60.4 15.0 149 285-438 153-306 (312)
29 PRK03562 glutathione-regulated 97.2 0.032 7E-07 62.1 19.9 132 278-411 11-143 (621)
30 COG0475 KefB Kef-type K+ trans 97.0 0.061 1.3E-06 56.6 18.8 141 277-419 11-155 (397)
31 PRK10669 putative cation:proto 96.9 0.064 1.4E-06 58.9 19.3 137 280-418 14-151 (558)
32 PRK03659 glutathione-regulated 96.8 0.11 2.4E-06 57.7 20.1 132 279-412 12-144 (601)
33 KOG1966 Sodium/hydrogen exchan 96.7 0.0012 2.6E-08 71.2 3.6 225 164-400 161-407 (670)
34 PRK05326 potassium/proton anti 96.5 0.11 2.4E-06 57.1 17.4 136 280-417 14-154 (562)
35 PLN03159 cation/H(+) antiporte 96.1 0.27 5.8E-06 56.7 18.4 140 283-424 54-210 (832)
36 PF03601 Cons_hypoth698: Conse 96.0 0.26 5.6E-06 50.1 15.8 141 293-435 23-169 (305)
37 COG0786 GltS Na+/glutamate sym 95.4 2.7 5.9E-05 43.9 20.5 107 278-384 224-341 (404)
38 TIGR00831 a_cpa1 Na+/H+ antipo 95.4 0.45 9.8E-06 52.0 15.6 117 280-396 6-123 (525)
39 COG2855 Predicted membrane pro 95.3 0.54 1.2E-05 48.1 14.8 147 286-434 27-177 (334)
40 TIGR00698 conserved hypothetic 95.1 1.1 2.3E-05 46.3 16.4 140 294-435 29-175 (335)
41 PF03812 KdgT: 2-keto-3-deoxyg 94.5 0.17 3.7E-06 51.2 8.7 132 299-437 174-311 (314)
42 PF05684 DUF819: Protein of un 94.5 1.6 3.4E-05 45.9 16.1 96 299-398 243-338 (378)
43 TIGR00793 kdgT 2-keto-3-deoxyg 94.4 0.45 9.7E-06 48.0 11.1 136 299-437 174-311 (314)
44 TIGR00844 c_cpa1 na(+)/h(+) an 94.0 0.75 1.6E-05 52.3 13.1 70 325-394 74-145 (810)
45 PF03956 DUF340: Membrane prot 93.9 0.93 2E-05 43.0 11.8 128 300-435 2-138 (191)
46 PRK05274 2-keto-3-deoxyglucona 93.6 0.41 8.9E-06 49.1 9.5 136 298-437 175-313 (326)
47 TIGR00946 2a69 he Auxin Efflux 92.4 3.1 6.7E-05 42.2 14.0 135 296-434 181-319 (321)
48 TIGR03082 Gneg_AbrB_dup membra 91.6 10 0.00023 34.5 16.3 117 281-402 4-125 (156)
49 PF00999 Na_H_Exchanger: Sodiu 90.2 0.039 8.3E-07 57.1 -2.6 109 285-393 9-123 (380)
50 PF05145 AmoA: Putative ammoni 88.9 30 0.00064 35.4 26.6 151 278-437 158-315 (318)
51 TIGR00783 ccs citrate carrier 88.9 5.7 0.00012 41.1 12.0 116 295-410 203-327 (347)
52 COG4651 RosB Kef-type K+ trans 87.9 4.7 0.0001 40.9 10.3 131 278-411 12-144 (408)
53 COG3180 AbrB Putative ammonia 87.8 37 0.0008 35.3 27.5 152 277-437 190-348 (352)
54 COG0786 GltS Na+/glutamate sym 86.8 2.9 6.3E-05 43.7 8.4 88 324-411 66-157 (404)
55 COG0025 NhaP NhaP-type Na+/H+ 86.6 35 0.00076 36.4 16.9 69 327-395 64-134 (429)
56 COG3180 AbrB Putative ammonia 86.3 45 0.00098 34.7 17.7 150 279-436 13-168 (352)
57 TIGR03802 Asp_Ala_antiprt aspa 86.1 30 0.00065 38.3 16.5 81 295-381 34-118 (562)
58 PF03616 Glt_symporter: Sodium 85.8 34 0.00073 35.8 15.9 95 295-390 246-345 (368)
59 PRK09903 putative transporter 85.7 28 0.0006 35.3 15.0 134 296-434 172-309 (314)
60 COG1346 LrgB Putative effector 84.8 41 0.00089 32.8 18.1 111 319-440 65-179 (230)
61 TIGR00210 gltS sodium--glutama 82.4 71 0.0015 33.8 18.5 116 325-441 65-188 (398)
62 PF03616 Glt_symporter: Sodium 79.2 86 0.0019 32.8 18.5 91 325-415 65-160 (368)
63 PRK04972 putative transporter; 77.3 73 0.0016 35.3 15.4 83 294-381 35-120 (558)
64 PF03977 OAD_beta: Na+-transpo 77.2 58 0.0013 33.6 13.3 105 327-437 69-175 (360)
65 TIGR00210 gltS sodium--glutama 76.9 21 0.00044 37.9 10.6 95 295-390 244-343 (398)
66 PRK10711 hypothetical protein; 73.7 73 0.0016 31.2 12.6 90 342-435 80-169 (231)
67 PF05145 AmoA: Putative ammoni 69.4 1E+02 0.0023 31.4 13.4 102 299-408 2-107 (318)
68 COG0679 Predicted permeases [G 69.2 1.3E+02 0.0029 30.3 24.6 139 294-435 165-307 (311)
69 PF04172 LrgB: LrgB-like famil 68.6 1.1E+02 0.0023 29.7 12.5 90 342-435 69-158 (215)
70 TIGR00659 conserved hypothetic 67.5 1.3E+02 0.0027 29.5 12.7 90 342-435 79-168 (226)
71 PF03547 Mem_trans: Membrane t 67.1 92 0.002 32.1 12.7 132 297-431 244-384 (385)
72 TIGR00841 bass bile acid trans 63.9 1.3E+02 0.0029 30.0 12.8 104 299-404 143-249 (286)
73 PF03547 Mem_trans: Membrane t 63.9 86 0.0019 32.3 11.8 104 300-404 10-118 (385)
74 PRK04288 antiholin-like protei 62.1 1.6E+02 0.0036 28.8 20.2 90 342-435 85-174 (232)
75 PF05982 DUF897: Domain of unk 60.4 97 0.0021 31.9 10.9 98 325-422 25-126 (327)
76 TIGR01625 YidE_YbjL_dupl AspT/ 59.3 47 0.001 30.4 7.7 86 295-380 20-115 (154)
77 PRK03818 putative transporter; 58.7 1.8E+02 0.0039 32.1 13.6 86 300-387 34-125 (552)
78 TIGR03136 malonate_biotin Na+- 57.3 2.6E+02 0.0055 29.5 13.8 106 327-437 105-212 (399)
79 PF03390 2HCT: 2-hydroxycarbox 57.1 1.4E+02 0.0031 31.7 11.9 117 277-393 252-376 (414)
80 COG3493 CitS Na+/citrate sympo 55.5 2.8E+02 0.006 29.4 13.6 95 315-410 310-413 (438)
81 TIGR00840 b_cpa1 sodium/hydrog 51.5 3.8E+02 0.0082 29.7 17.3 72 327-398 70-150 (559)
82 PRK14853 nhaA pH-dependent sod 48.7 3.5E+02 0.0075 29.0 13.2 22 326-347 67-88 (423)
83 TIGR00841 bass bile acid trans 48.4 2.6E+02 0.0057 27.9 11.9 100 330-435 14-120 (286)
84 PRK04125 murein hydrolase regu 48.0 1.4E+02 0.003 27.0 8.7 84 108-191 6-119 (141)
85 PRK04972 putative transporter; 47.2 2.1E+02 0.0046 31.7 11.9 92 294-387 408-508 (558)
86 PRK01658 holin-like protein; V 46.6 1.7E+02 0.0038 25.6 9.0 83 109-191 4-116 (122)
87 PRK14854 nhaA pH-dependent sod 45.7 1.4E+02 0.003 31.5 9.4 23 326-348 61-83 (383)
88 TIGR03802 Asp_Ala_antiprt aspa 44.0 1.3E+02 0.0029 33.3 9.7 85 296-380 415-508 (562)
89 COG3329 Predicted permease [Ge 43.8 2.4E+02 0.0052 29.0 10.4 120 296-418 16-139 (372)
90 PF05684 DUF819: Protein of un 42.9 4.2E+02 0.0092 27.8 14.6 118 298-418 27-150 (378)
91 PRK12671 putative monovalent c 42.2 2.4E+02 0.0052 24.8 12.3 31 417-447 76-106 (120)
92 PRK14855 nhaA pH-dependent sod 40.1 1.6E+02 0.0034 31.5 9.0 23 326-348 68-90 (423)
93 COG3263 NhaP-type Na+/H+ and K 37.7 4.6E+02 0.0099 28.5 11.8 67 327-393 65-132 (574)
94 PF13593 DUF4137: SBF-like CPA 35.7 4.9E+02 0.011 26.5 14.4 50 299-349 7-56 (313)
95 TIGR01109 Na_pump_decarbB sodi 34.5 3.3E+02 0.0071 28.2 9.8 105 327-437 63-175 (354)
96 TIGR00946 2a69 he Auxin Efflux 34.4 3.8E+02 0.0082 27.0 10.7 106 298-404 12-124 (321)
97 KOG4112 Signal peptidase subun 34.2 2.9E+02 0.0062 23.3 7.8 77 376-462 20-96 (101)
98 PRK14856 nhaA pH-dependent sod 33.7 2.3E+02 0.0049 30.5 9.0 23 326-348 73-95 (438)
99 PRK10503 multidrug efflux syst 33.5 6.6E+02 0.014 30.1 13.8 34 417-452 1004-1037(1040)
100 PRK12585 putative monovalent c 32.9 3.5E+02 0.0075 25.9 9.0 29 419-447 72-100 (197)
101 PRK09561 nhaA pH-dependent sod 31.4 2.8E+02 0.0061 29.3 9.1 23 326-348 64-86 (388)
102 PRK10263 DNA translocase FtsK; 30.1 6.4E+02 0.014 31.1 12.6 36 294-340 61-96 (1355)
103 PRK09560 nhaA pH-dependent sod 28.0 3.2E+02 0.0069 28.9 8.8 23 326-348 64-86 (389)
104 TIGR02871 spore_ylbJ sporulati 27.6 6E+02 0.013 26.6 10.8 103 110-212 49-154 (362)
105 PF03601 Cons_hypoth698: Conse 27.6 6.7E+02 0.014 25.5 19.5 34 316-349 264-297 (305)
106 COG2431 Predicted membrane pro 27.5 6.6E+02 0.014 25.5 16.1 79 354-435 166-245 (297)
107 TIGR00773 NhaA Na+/H+ antiport 24.4 4.4E+02 0.0096 27.7 9.1 23 326-348 57-79 (373)
108 TIGR00832 acr3 arsenical-resis 23.8 4.5E+02 0.0097 26.9 9.0 104 298-401 183-297 (328)
109 PRK09903 putative transporter 23.8 6.4E+02 0.014 25.3 10.1 83 299-382 12-97 (314)
110 KOG1650 Predicted K+/H+-antipo 23.0 2E+02 0.0044 33.2 6.9 31 320-350 82-112 (769)
111 TIGR03082 Gneg_AbrB_dup membra 22.6 1.2E+02 0.0025 27.6 4.0 32 117-148 2-35 (156)
112 PF13642 DUF4144: protein stru 22.4 43 0.00094 28.5 1.0 23 80-102 32-54 (101)
113 PRK15477 oxaloacetate decarbox 21.6 2.4E+02 0.0051 29.8 6.3 105 327-436 134-245 (433)
114 PRK15476 oxaloacetate decarbox 21.6 2.4E+02 0.0051 29.8 6.3 105 327-436 134-245 (433)
115 PRK15475 oxaloacetate decarbox 21.5 2.4E+02 0.0052 29.7 6.3 105 327-436 134-245 (433)
116 COG1510 Predicted transcriptio 21.4 1.5E+02 0.0032 27.8 4.4 56 125-193 15-70 (177)
117 PRK12430 putative bifunctional 20.7 1.3E+02 0.0027 31.6 4.2 61 89-149 2-69 (379)
118 PF02040 ArsB: Arsenical pump 20.6 1.1E+03 0.023 25.3 15.2 38 179-216 115-152 (423)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=8e-46 Score=405.10 Aligned_cols=330 Identities=25% Similarity=0.395 Sum_probs=290.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchHhH------HH--------------------
Q 012343 107 VDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ-------------------- 160 (465)
Q Consensus 107 ~d~~li~~l~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~~------~q-------------------- 160 (465)
+|+.++.++.+++..+.+++.+++|+|+|+++|||++|+++||+++|++++. .|
T Consensus 2 ~~~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~ 81 (621)
T PRK03562 2 MDSHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLW 81 (621)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 4678999999999999999999999999999999999999999999987531 11
Q ss_pred --------------------------HhcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHH
Q 012343 161 --------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVG 214 (465)
Q Consensus 161 --------------------------l~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ 214 (465)
++|+++..++++|.+++.|||++++++++|++..++++||.+++.+++||+.++
T Consensus 82 ~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i 161 (621)
T PRK03562 82 KLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAI 161 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHh
Q 012343 215 LLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKL 294 (465)
Q Consensus 215 ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~l 294 (465)
+++++++.+...+... +........+..++++++.++.+||+.+++++++.+ .+.+|.+...++.++++++++++.+
T Consensus 162 ~ll~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~--~~~~e~~~~~~l~lv~~~a~la~~~ 238 (621)
T PRK03562 162 PLVAMIPLLAASGAST-TLGAFALSALKVAGALALVVLGGRYVTRPALRFVAR--SGLREVFTAVALFLVFGFGLLMEEV 238 (621)
T ss_pred HHHHHHHHHccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999888776432110 111112222333344445566788999999999876 3578988888889999999999999
Q ss_pred CchHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 295 GLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 374 (465)
Q Consensus 295 Gls~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~ 374 (465)
|+|+++|||+||++++++++++++.++++|++++|+|+||+++|+++|+..+..+++.++.+++..+++|++++++.+++
T Consensus 239 Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~ 318 (621)
T PRK03562 239 GLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP 318 (621)
T ss_pred CccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988777777777778899999999999999
Q ss_pred hCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012343 375 FGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVM 439 (465)
Q Consensus 375 ~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~~~~~~ 439 (465)
+|+++++++.+|++|+|+|||++++++.|.+.|+++++.|+.++.++++|++++|++.+++++..
T Consensus 319 ~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~ 383 (621)
T PRK03562 319 LGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLE 383 (621)
T ss_pred hCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887764
No 2
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=383.47 Aligned_cols=328 Identities=30% Similarity=0.493 Sum_probs=283.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchHhH------HH-----------------------
Q 012343 110 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ----------------------- 160 (465)
Q Consensus 110 ~li~~l~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~~------~q----------------------- 160 (465)
.++.+++++++.+.+++.+++|+|+|+++|||++|+++||+++|.+++. .|
T Consensus 6 ~~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~ 85 (558)
T PRK10669 6 PLITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVK 85 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHh
Confidence 6778889999999999999999999999999999999999999886421 11
Q ss_pred -----------------------HhcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHH
Q 012343 161 -----------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLF 217 (465)
Q Consensus 161 -----------------------l~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ll~ 217 (465)
.+|+++.+++++|++++.||+++++++++|+|..++++||++++++++||+.+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l 165 (558)
T PRK10669 86 SIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTL 165 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhcC---CC-chh-hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH-H
Q 012343 218 ALLPVLGGN---SG-LLQ-GMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWC-S 291 (465)
Q Consensus 218 al~~~l~~~---~~-~~~-~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~i-a 291 (465)
++++.+.+. ++ ... ....+.+.++..++++++..+++|++.+|+.++.++ .+.+|.+.+.++++++++++. +
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~e~~~l~~l~~~l~~a~~~~ 243 (558)
T PRK10669 166 VLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA--TGSRELFTLSVLALALGIAFGAV 243 (558)
T ss_pred HHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHHHHH
Confidence 887665431 11 110 112233444455566666777888999999998876 357888888888888888865 6
Q ss_pred HHhCchHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 292 DKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIV 371 (465)
Q Consensus 292 e~lGls~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~ 371 (465)
+.+|+|+++|||++|+++++.+.++++.+...|++++|.|+||+++|+++|+..+.+++..++.+++..+++|+++++..
T Consensus 244 ~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~ 323 (558)
T PRK10669 244 ELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFL 323 (558)
T ss_pred HHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888999999999999999999999988776666667777899999999999
Q ss_pred HHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012343 372 TKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVM 439 (465)
Q Consensus 372 ~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~~~~~~ 439 (465)
++++|+++|+++.+|++|+|+||+++++++.|.+.|+++++.|..++.++++|++++|+++++.++..
T Consensus 324 ~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~~ 391 (558)
T PRK10669 324 VRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERYL 391 (558)
T ss_pred HHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876654
No 3
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=5.6e-44 Score=400.69 Aligned_cols=342 Identities=17% Similarity=0.272 Sum_probs=286.5
Q ss_pred CCeeeecCCCCCCchhhhcHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchHh------------
Q 012343 90 DNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------------ 157 (465)
Q Consensus 90 ~n~~~~~~p~~~~~~~~~d~~li~~l~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~------------ 157 (465)
++.|...||.+.+. ..++.|++++++++.+++++++|+|||+++|||++|+++||+++|.+++
T Consensus 28 ~g~~~g~~pl~~~l-----~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~ 102 (832)
T PLN03159 28 NGIWQGDNPLDFSL-----PLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVM 102 (832)
T ss_pred CcccccCCcccchH-----HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHH
Confidence 45677888887642 6799999999999999999999999999999999999999999988641
Q ss_pred HH----H--------------------------------------Hhc--------C------chHHHHHHHHHHhhccH
Q 012343 158 LV----Q--------------------------------------LCG--------A------KLSEGVFVGSFLSMSST 181 (465)
Q Consensus 158 ~~----q--------------------------------------l~G--------~------~~~~al~ig~~ls~TS~ 181 (465)
.. + .+| . .....+++|+++|.||+
T Consensus 103 ~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~ 182 (832)
T PLN03159 103 VLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAF 182 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhH
Confidence 11 1 011 1 12246889999999999
Q ss_pred HHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 012343 182 AVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRF 261 (465)
Q Consensus 182 ~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l 261 (465)
|+++++|+|+|+++++.||++++++++||+.++++++++..+...+.. . ....+.++..++|+++++++.|++.+|+
T Consensus 183 pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~--~-~~~l~~~l~~~~f~~~~~~v~r~~~~~~ 259 (832)
T PLN03159 183 PVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDST--S-LASLWVLLSSVAFVLFCFYVVRPGIWWI 259 (832)
T ss_pred HHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--c-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887666543221 1 1122344445566667777778888888
Q ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCcchhhHHHhhhcHH-HHHHHHHHHHhcch
Q 012343 262 LKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIR-NLFAALFLSSIGML 340 (465)
Q Consensus 262 ~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~~~~~l~~~ie~i~-~~f~piFF~~iGl~ 340 (465)
.++.++ +++.+|.++..+++.++++++++|.+|+|+++|||++|+++++.+.++++.++++++. ++|+|+||+++|++
T Consensus 260 ~r~~~~-~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~ 338 (832)
T PLN03159 260 IRRTPE-GETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLK 338 (832)
T ss_pred HHhCcC-CCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 888754 2445777888888888999999999999999999999999999888889999999994 89999999999999
Q ss_pred hhHhhHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 012343 341 IHVHFLWNH--VDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL 418 (465)
Q Consensus 341 i~~~~l~~~--~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll 418 (465)
+|+..+.+. |..+++++++.+++|+++++++++++|+++++++.+|++|++||+++++++..|.+.|+++++.|+.++
T Consensus 339 idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lV 418 (832)
T PLN03159 339 TNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMV 418 (832)
T ss_pred eeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHH
Confidence 999887653 344456667788999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH-HHHHHHHHHHHHhhhhhhh
Q 012343 419 GTT-ALSLVTTPLLFKLIPNVMN 440 (465)
Q Consensus 419 ~~v-~lS~i~~Pll~r~~~~~~~ 440 (465)
+++ +.|.+++|++.++++|..+
T Consensus 419 l~avl~T~i~~Plv~~ly~p~rk 441 (832)
T PLN03159 419 LVAVAMTALITPVVTVVYRPARR 441 (832)
T ss_pred HHHHHHHHHHHHHHHHHhCHHhh
Confidence 655 5799999999988887543
No 4
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=2.1e-43 Score=385.17 Aligned_cols=323 Identities=33% Similarity=0.499 Sum_probs=283.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchHhH------HH-----------------------
Q 012343 110 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ----------------------- 160 (465)
Q Consensus 110 ~li~~l~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~~------~q----------------------- 160 (465)
.++.++.+++..+.+.+++++|+|+|+++||+++|+++||+++|.+++. .|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~ 84 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLR 84 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5678999999999999999999999999999999999999999987521 11
Q ss_pred -----------------------HhcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHH
Q 012343 161 -----------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLF 217 (465)
Q Consensus 161 -----------------------l~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ll~ 217 (465)
++|+++..++++|.+++.|||+++.++|+|++..++++||++++.+++||+.+++++
T Consensus 85 ~~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll 164 (601)
T PRK03659 85 RSIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPAL 164 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCch
Q 012343 218 ALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLS 297 (465)
Q Consensus 218 al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls 297 (465)
++++.+.+.......+... .... +.++..++.+|++.++++++..+ .+.+|.+...++.++++++++++.+|+|
T Consensus 165 ~l~~~l~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~l~~vl~~a~l~~~~Gls 238 (601)
T PRK03659 165 ALVPLLAGSADEHFDWMKI---GMKV-LAFAGMLIGGRYLLRPLFRFIAA--SGVREVFTAAALLLVLGSALFMDALGLS 238 (601)
T ss_pred HHHHHHhcCCCcchHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9887776432211012211 1112 22233456678899999998875 4678998888899999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 012343 298 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY 377 (465)
Q Consensus 298 ~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~ 377 (465)
+++|||+||++++++++++++.++++|++++|.|+||+++|+++|+..+..+++.++.+++..+++|++++++.++.+|.
T Consensus 239 ~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~ 318 (601)
T PRK03659 239 MALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGL 318 (601)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999998887777777778899999999999999999
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012343 378 SMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNV 438 (465)
Q Consensus 378 ~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~~~~~ 438 (465)
++++++.+|++|+|+|||++++++.|.+.|+++++.|+.++.++++|++++|++.+.+++.
T Consensus 319 ~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~ 379 (601)
T PRK03659 319 RSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKW 379 (601)
T ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999998774
No 5
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-42 Score=359.22 Aligned_cols=321 Identities=32% Similarity=0.544 Sum_probs=277.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchH---h----HHH---------------------
Q 012343 109 LRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS---E----LVQ--------------------- 160 (465)
Q Consensus 109 ~~li~~l~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~---~----~~q--------------------- 160 (465)
...+.++.+++..+.+.+++++|+|+|+++||+++|+++||.+++.+. + ..|
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~ 84 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKK 84 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHH
Confidence 568899999999999999999999999999999999999996554433 1 111
Q ss_pred -------------------------H--hcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHH
Q 012343 161 -------------------------L--CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAV 213 (465)
Q Consensus 161 -------------------------l--~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~ 213 (465)
+ +|+++..++++|.+++.||+++++++++|+|..++++||.+++++++||+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~ 164 (397)
T COG0475 85 VGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAA 164 (397)
T ss_pred hchhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 1 6788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHH
Q 012343 214 GLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDK 293 (465)
Q Consensus 214 ~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~ 293 (465)
++++++.+.+.++++.. ...+...+....+|.++.+..+||+.++++|+..+ .+.+|.....++++++..++++|.
T Consensus 165 i~lLai~~~l~~~g~~~--~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~--~~~~e~~~~~~l~i~l~~a~l~e~ 240 (397)
T COG0475 165 ILLLAIVPALAGGGSGS--VGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAK--TESSELFILFVLLLVLGAAYLAEL 240 (397)
T ss_pred HHHHHHHHHHccCCCcc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887553321 11134455566677777777789999999999986 367888899999999999999999
Q ss_pred hCchHHHHHHHHHHHhcCCcch-hhHHHhhhcHHH-HHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 294 LGLSLELGSFMAGVMISTTDFA-KHTLDQVEPIRN-LFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIV 371 (465)
Q Consensus 294 lGls~~lGaFlaGl~is~~~~~-~~l~~~ie~i~~-~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~ 371 (465)
+|+|+++|||+||+++++.+++ ++++++++|+++ +|+|+||+++|+++|++.+.+++..++.++...+++|..++++.
T Consensus 241 ~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~ 320 (397)
T COG0475 241 LGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLA 320 (397)
T ss_pred hChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888 799999999998 99999999999999999999988888888889999999999999
Q ss_pred HHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 372 TKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKL 434 (465)
Q Consensus 372 ~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~ 434 (465)
+|..|.+.|++...|.++.|+||++++.++.+.+ +.++++.+...+..+++++.+.|.+.+.
T Consensus 321 ~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~ 382 (397)
T COG0475 321 ARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPI 382 (397)
T ss_pred HHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877 5777777777665555555555544433
No 6
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=329.28 Aligned_cols=333 Identities=31% Similarity=0.523 Sum_probs=300.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchHh------HHH------------------
Q 012343 105 LQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------LVQ------------------ 160 (465)
Q Consensus 105 ~~~d~~li~~l~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~------~~q------------------ 160 (465)
+|+|..++..+..-+..++++|.++.|+|+|+.+||+++|+++||...|++.| +.|
T Consensus 1 m~h~tpli~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkd 80 (408)
T COG4651 1 MHHDTPLITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKD 80 (408)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHH
Confidence 46788899999999999999999999999999999999999999998888753 111
Q ss_pred ----------------------------HhcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHH
Q 012343 161 ----------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCA 212 (465)
Q Consensus 161 ----------------------------l~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~ 212 (465)
+.||++...+.+|.++|.+||.+..|-++|++..+++.||+++|..+++|+.
T Consensus 81 LLavk~iAipgAl~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~ 160 (408)
T COG4651 81 LLAVKAIAIPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLA 160 (408)
T ss_pred HhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHH
Confidence 5678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC----ch-hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHH
Q 012343 213 VGLLFALLPVLGGNSG----LL-QGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLS 287 (465)
Q Consensus 213 ~~ll~al~~~l~~~~~----~~-~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~ 287 (465)
.++.+.+.|++++--+ .. +....++.++.+.+.|..+..+++|.+.||+++++.. .+++|.+.+..+++.+++
T Consensus 161 mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~--tGsrElf~L~vla~ALgV 238 (408)
T COG4651 161 MVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA--TGSRELFTLAVLAIALGV 238 (408)
T ss_pred HHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHH
Confidence 9999988888765311 11 1224556677788899999999999999999999987 478999999999999999
Q ss_pred HHH-HHHhCchHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHH
Q 012343 288 AWC-SDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTA 366 (465)
Q Consensus 288 ~~i-ae~lGls~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v 366 (465)
++- ++.+|+|+.+|||++|+++++++.+++..+..-|++|.|..+||+++||.+||..+.+++..++...++.+.+|-+
T Consensus 239 a~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~ 318 (408)
T COG4651 239 AFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSV 318 (408)
T ss_pred hhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHH
Confidence 876 4678999999999999999999999999999999999999999999999999999998877777777788999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012343 367 VGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVM 439 (465)
Q Consensus 367 ~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~~~~~~ 439 (465)
..+...+.+|.|.|+++.++.+++|.|||+++++..+.+.+++++..-.+++...++|.+..|+++...|+..
T Consensus 319 aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~~ 391 (408)
T COG4651 319 AAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQ 391 (408)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988888888999999999999999988643
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=2.4e-32 Score=296.62 Aligned_cols=322 Identities=16% Similarity=0.156 Sum_probs=253.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchH--h--HHH------------------------
Q 012343 109 LRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS--E--LVQ------------------------ 160 (465)
Q Consensus 109 ~~li~~l~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~--~--~~q------------------------ 160 (465)
..++++++++++++.+++.+++|+|+|.+++|+++|+++||+++|.++ + ..+
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~ 84 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFR 84 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHH
Confidence 367889999999999999999999999999999999999999988652 1 111
Q ss_pred ---------------------------HhcCchHHHHHHHHHHhhccHHHHHHHHhhccc-CCcchHHHHHHHHHHHHHH
Q 012343 161 ---------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCA 212 (465)
Q Consensus 161 ---------------------------l~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~-l~s~~g~i~l~~avl~Dv~ 212 (465)
++|+++.+++++|+++++||++++.++++|.+. ++++.++++.+++.+||..
T Consensus 85 ~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ 164 (562)
T PRK05326 85 PALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPM 164 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHH
Confidence 457899999999999999999999999999984 7899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 012343 213 VGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSD 292 (465)
Q Consensus 213 ~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae 292 (465)
+++++.++..+...++....+..+...+... ++.++..++.+++..+++++.+. +.++.+...+++.++.+++++|
T Consensus 165 ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~G~~~g~l~~~l~~~~~~---~~~~~~~i~~l~~~l~~~~~a~ 240 (562)
T PRK05326 165 AVFLTITLIELITGGETGLSWGFLLLFLQQF-GLGALIGLLGGWLLVQLLNRIAL---PAEGLYPILVLAGALLIFALTA 240 (562)
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccC---chhhHHHHHHHHHHHHHHHHHH
Confidence 8877766544332221101121121222222 22222233344667777776632 2456677788889999999999
Q ss_pred HhCchHHHHHHHHHHHhcCCc--chhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHH-HHHHHHHHHHHHHHHH
Q 012343 293 KLGLSLELGSFMAGVMISTTD--FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDIL-LASVILVIIVKTAVGT 369 (465)
Q Consensus 293 ~lGls~~lGaFlaGl~is~~~--~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~-l~l~~~~vl~K~v~~~ 369 (465)
.+|.|+.+|+|++|+++++.+ ..+++.+..+.+.+++.|+||+++|+.+|++.+.+.++.. ++.+++.+++|+++++
T Consensus 241 ~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~ 320 (562)
T PRK05326 241 ALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVF 320 (562)
T ss_pred HHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 3345666667778899999999999999999887654433 3334567889999999
Q ss_pred HHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 012343 370 IVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEG-KMYLLLLGTTALSLVTTPLLFKLI 435 (465)
Q Consensus 370 l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~-~~~~~ll~~v~lS~i~~Pll~r~~ 435 (465)
++.+.+++++||+..+|+. ++||+++++++..+...|+.+. +.|.+...++++|+++.+...+..
T Consensus 321 l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~ 386 (562)
T PRK05326 321 LSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWA 386 (562)
T ss_pred HHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHH
Confidence 9999999999999999994 8999999999999999999874 566777788889999988876653
No 8
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-32 Score=300.63 Aligned_cols=340 Identities=19% Similarity=0.270 Sum_probs=283.3
Q ss_pred eecCCCCCCchhhhcHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchHhHH------------H-
Q 012343 94 VMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELV------------Q- 160 (465)
Q Consensus 94 ~~~~p~~~~~~~~~d~~li~~l~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~~~------------q- 160 (465)
...||-+++. +.++.|+.++++++.++..+++++|||+++.++++|+++||+.++.+.... +
T Consensus 12 ~~~~~~~~~l-----pl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~ 86 (769)
T KOG1650|consen 12 PGVNPLKYAL-----PLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLEL 86 (769)
T ss_pred cCCCcccccc-----HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHH
Confidence 3445555432 689999999999999999999999999999999999999999988774210 0
Q ss_pred -----------------------------------------HhcC-------------------chHHHHHHHHHHhhcc
Q 012343 161 -----------------------------------------LCGA-------------------KLSEGVFVGSFLSMSS 180 (465)
Q Consensus 161 -----------------------------------------l~G~-------------------~~~~al~ig~~ls~TS 180 (465)
..|. .+.+-.++..+.+.||
T Consensus 87 ~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ts 166 (769)
T KOG1650|consen 87 LANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITS 166 (769)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcch
Confidence 0010 1125688889999999
Q ss_pred HHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 012343 181 TAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPR 260 (465)
Q Consensus 181 ~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~ 260 (465)
.+++.++|.|++++|++.||+++++++++|+.+|.++++..++.+..+. .+..+ .+.+...+++.+++..+.|+...|
T Consensus 167 fpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~~~~v~~p~~~w 244 (769)
T KOG1650|consen 167 FPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKL-SPLRS-VWDLVLVIGFVLFLFFVVRPLMKW 244 (769)
T ss_pred hHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC-cchHH-HHHHHHHHHHHHheeeehhhhHHH
Confidence 9999999999999999999999999999999999888877666654331 12122 344455556777777777888888
Q ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHhcCC-cchhhHHHhhhcHH-HHHHHHHHHHh
Q 012343 261 FLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLG-LSLELGSFMAGVMISTT-DFAKHTLDQVEPIR-NLFAALFLSSI 337 (465)
Q Consensus 261 l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lG-ls~~lGaFlaGl~is~~-~~~~~l~~~ie~i~-~~f~piFF~~i 337 (465)
+.|+.++ +++.++.+....+..++.++.+++.++ .++.+|+|+.|+++|++ |.+..+.+++|.+. ++|+|+||+..
T Consensus 245 i~kr~pe-~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~ 323 (769)
T KOG1650|consen 245 IIKRTPE-GKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAIS 323 (769)
T ss_pred HhhcCCC-CCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888443 456777788888888999999999988 89999999999999988 68899999999996 89999999999
Q ss_pred cchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHH
Q 012343 338 GMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLL 417 (465)
Q Consensus 338 Gl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~l 417 (465)
|++.|...+.. |......+.....+|++++..++.++|.|+||++.+|.+|+++|.++++....+.+.++++++.|+.+
T Consensus 324 G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~ 402 (769)
T KOG1650|consen 324 GLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVM 402 (769)
T ss_pred ccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHH
Confidence 99999999888 55566777788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhhhhhhhhh
Q 012343 418 LGTTAL-SLVTTPLLFKLIPNVMNLG 442 (465)
Q Consensus 418 l~~v~l-S~i~~Pll~r~~~~~~~~~ 442 (465)
+..+++ |.+++|++...+||..+..
T Consensus 403 vl~alv~t~I~~~~l~~~y~p~~~~~ 428 (769)
T KOG1650|consen 403 VLMALVSTFITPPLLMFLYDPTRKYH 428 (769)
T ss_pred HHHHHHHHhhHHHHHHHhcchhhhcC
Confidence 977776 5667777788888876643
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.97 E-value=4.3e-34 Score=295.00 Aligned_cols=313 Identities=25% Similarity=0.453 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchHhH-H------H-----------------------------
Q 012343 117 VVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL-V------Q----------------------------- 160 (465)
Q Consensus 117 iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~~-~------q----------------------------- 160 (465)
++++.+.+.+++++|+++|.++||+++|+++||.+++.+++. . +
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~ 82 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALAL 82 (380)
T ss_dssp ---------------------------------------------S-SSHHHHS--SSHHHHTTGGGG------------
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 455667788889999999999999999999999998865421 0 0
Q ss_pred -----------------H----hcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 012343 161 -----------------L----CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFAL 219 (465)
Q Consensus 161 -----------------l----~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ll~al 219 (465)
. .|+++.+++++|.++++||++++.++++|++..+++.++++++++++||+.+++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~ 162 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSI 162 (380)
T ss_dssp -------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhh
Confidence 1 3557889999999999999999999999988899999999999999999999888876
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHH
Q 012343 220 LPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLE 299 (465)
Q Consensus 220 ~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~ 299 (465)
.....+.+... ........++. .+...++.+++.+++.++..+..++++|.....++++++.+++++|.+|.|+.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~ 237 (380)
T PF00999_consen 163 LISLAQASGQS-SLGQLLLSFLW----IILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEILGLSGI 237 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhcccccc-cccchhcchhh----hhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccccccccccc
Confidence 65544211111 11111111111 11222223345556666655532356777788899999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHhhhcHH-HHHHHHHHHHhcchhhHhhHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 300 LGSFMAGVMISTTDFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLW---NHVDILLASVILVIIVKTAVGTIVTKLF 375 (465)
Q Consensus 300 lGaFlaGl~is~~~~~~~l~~~ie~i~-~~f~piFF~~iGl~i~~~~l~---~~~~~~l~l~~~~vl~K~v~~~l~~~~~ 375 (465)
+|+|++|+++++.+.++++.+++++++ +++.|+||+++|+++|++.+. ..+...+.+.+...++|++++++..+..
T Consensus 238 l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 317 (380)
T PF00999_consen 238 LGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLF 317 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhc
Confidence 999999999998888888999999999 899999999999999998884 3445556666677799999999999999
Q ss_pred CCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 376 GYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKL 434 (465)
Q Consensus 376 g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~ 434 (465)
|.++|++..+|+++.+||+++++++..+.+.|.++++.++.++.++++|++++|...+.
T Consensus 318 ~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~ 376 (380)
T PF00999_consen 318 GIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSP 376 (380)
T ss_dssp -----HHHHTTTTSS--HHHHHHHHHHHHH-----------------------------
T ss_pred ccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888665
No 10
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.96 E-value=3.2e-28 Score=241.26 Aligned_cols=219 Identities=35% Similarity=0.583 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchHhH------HH---------------------------------
Q 012343 120 VSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ--------------------------------- 160 (465)
Q Consensus 120 ~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~~------~q--------------------------------- 160 (465)
+++.+.+.+++|+|+|++++|+++|+++||+++|.+++. .+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~ 81 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ 81 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999999876421 00
Q ss_pred --------------HhcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012343 161 --------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGN 226 (465)
Q Consensus 161 --------------l~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~ 226 (465)
++|+++.+++++|+++++||++++.++++|++..+++.|+++++++++||+.+++++++.....+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~ 161 (273)
T TIGR00932 82 VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATS 161 (273)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 457788999999999999999999999999999999999999999999999999988887665432
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Q 012343 227 SGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAG 306 (465)
Q Consensus 227 ~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaG 306 (465)
.+. ...+........+++.++..++.+|..+|+.|+.++ .+++|.+...++.+++.+++++|.+|.|+.+|||++|
T Consensus 162 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aG 237 (273)
T TIGR00932 162 AST--EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE--LRPSELFTAGSLLLMFGSAYFADLLGLSMALGAFLAG 237 (273)
T ss_pred CCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 211 111222233333344444556778888898888775 3446778888889999999999999999999999999
Q ss_pred HHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhh
Q 012343 307 VMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIH 342 (465)
Q Consensus 307 l~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~ 342 (465)
+++++.+.++++.++++++.++|.|+||+++|+++|
T Consensus 238 l~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 238 VVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 999999878889999999999999999999999986
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.87 E-value=1.1e-19 Score=199.51 Aligned_cols=287 Identities=14% Similarity=0.112 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchHh------------HHH---------------------------
Q 012343 120 VSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------------LVQ--------------------------- 160 (465)
Q Consensus 120 ~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~------------~~q--------------------------- 160 (465)
+.+.+..++.+|+.+|..+-++++|+++||.++|.++. +.+
T Consensus 24 l~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~ 103 (810)
T TIGR00844 24 IFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVT 103 (810)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHH
Confidence 44445555555999999999999999999998876641 111
Q ss_pred --------------------H-hcCchHHHHHHHHHHhhccHHHHHHHHhhc--ccCCcchHHHHHHHHHHHHHHHHHHH
Q 012343 161 --------------------L-CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQ--NSNNALHGQVTIGTLILQDCAVGLLF 217 (465)
Q Consensus 161 --------------------l-~G~~~~~al~ig~~ls~TS~~vv~~iL~e~--~~l~s~~g~i~l~~avl~Dv~~~ll~ 217 (465)
+ .|++|..++++|+++++|+|+.+..+++.. ..+..+...++.+.+.+||.++.+++
T Consensus 104 rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL~~ESGlNDGlAfpfv 183 (810)
T TIGR00844 104 MLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLLSCESGCNDGLAFPFV 183 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHHhhhhhcccHHHHHHH
Confidence 2 488999999999999999999998888732 12556778888999999999988776
Q ss_pred HHHHHHhc--C-CCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHh
Q 012343 218 ALLPVLGG--N-SGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKL 294 (465)
Q Consensus 218 al~~~l~~--~-~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~l 294 (465)
.+...+.. . ++.....+.+...+..+++.+++.++++ ++..++.++.++...-.+|.+....+++++.++.+++.+
T Consensus 184 ~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG-~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~~gla~lL 262 (810)
T TIGR00844 184 FLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIG-YCGRKAIRFAEGKNIIDRESFLAFYLILALTCAGFGSML 262 (810)
T ss_pred HHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 55433221 1 1111001111112222223344444555 577788887765333355666667778888889999999
Q ss_pred CchHHHHHHHHHHHhcCCcc-hhhH-HHhhhcH-HHHHHHHHHHHhcchhhHhhHhH------HHHHHHHHHHHHHHHHH
Q 012343 295 GLSLELGSFMAGVMISTTDF-AKHT-LDQVEPI-RNLFAALFLSSIGMLIHVHFLWN------HVDILLASVILVIIVKT 365 (465)
Q Consensus 295 Gls~~lGaFlaGl~is~~~~-~~~l-~~~ie~i-~~~f~piFF~~iGl~i~~~~l~~------~~~~~l~l~~~~vl~K~ 365 (465)
|.|..+++|+||+++++... .++. ...+... ..++...+|+.+|+.+.+..+.. .|..+++.+++.++.|+
T Consensus 263 ggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRP 342 (810)
T TIGR00844 263 GVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRI 342 (810)
T ss_pred ccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998632 2111 1122222 35888899999999998876643 23344555566778898
Q ss_pred HHHHHHHHHh--CCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Q 012343 366 AVGTIVTKLF--GYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHL 408 (465)
Q Consensus 366 v~~~l~~~~~--g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~gi 408 (465)
.++++..... ..+++|++++|| .++||..+++++..|++.+.
T Consensus 343 paVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 343 PAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 8887754443 368999999999 99999999999999988765
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.86 E-value=9.8e-19 Score=188.62 Aligned_cols=279 Identities=14% Similarity=0.177 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccc-hH---hHH----------H---------------------
Q 012343 116 VVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKF-IS---ELV----------Q--------------------- 160 (465)
Q Consensus 116 ~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~-I~---~~~----------q--------------------- 160 (465)
..+++.+.....+++|+++|.+++++++|+++||...+. ++ +.. +
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la 83 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIA 83 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 344555666778899999999999999999999764321 11 110 0
Q ss_pred -----------------HhcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 161 -----------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVL 223 (465)
Q Consensus 161 -----------------l~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ll~al~~~l 223 (465)
+.|+|+..++++|+++++||++++.+++++.+ .+++..+++.+.+.+||..+++++.+...+
T Consensus 84 ~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alvlf~~~~~~ 162 (525)
T TIGR00831 84 FLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALVVFAIAVAV 162 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHHHHHHHHHH
Confidence 34788999999999999999999999999975 567788999999999999999888876554
Q ss_pred hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Q 012343 224 GGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSF 303 (465)
Q Consensus 224 ~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaF 303 (465)
..+++..+........+...++.+++.++++ ++..++.++. .+.+......++++++..+.++|.+|.|+.+++|
T Consensus 163 ~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g-~~~~~l~~~~----~~~~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv 237 (525)
T TIGR00831 163 ALGKGVFDPLNAALDFAVVCVGGIAAGLAVG-YLAYRLLRAK----IDDPLVEIALTILAPFAGFLLAERFHFSGVIAVV 237 (525)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4322211111111111122222233333343 3445555432 1233445667788889999999999999999999
Q ss_pred HHHHHhcCCcc----hhhHHHhhhcH----HHHHHHHHHHHhcchhhHhhH--hHH----HH--H------HHHHHHHHH
Q 012343 304 MAGVMISTTDF----AKHTLDQVEPI----RNLFAALFLSSIGMLIHVHFL--WNH----VD--I------LLASVILVI 361 (465)
Q Consensus 304 laGl~is~~~~----~~~l~~~ie~i----~~~f~piFF~~iGl~i~~~~l--~~~----~~--~------~l~l~~~~v 361 (465)
++|+++++... .++...+.+.+ ..++.+++|+.+|+++..... +.. +. . .+.+.....
T Consensus 238 ~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 317 (525)
T TIGR00831 238 AAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMT 317 (525)
T ss_pred HHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999998632 12233334334 458889999999999874211 110 00 0 111122234
Q ss_pred HHHHHHHHHHH--HH-----hCCChHHHHHHHHHHhhHHHHHHHHHH
Q 012343 362 IVKTAVGTIVT--KL-----FGYSMRTSFLVGVSLAQIGEFAFVLLS 401 (465)
Q Consensus 362 l~K~v~~~l~~--~~-----~g~~~~~a~~vgl~L~~~Ge~slvla~ 401 (465)
..|++..+... +. .+.++|++..++| -+.||.+++.++.
T Consensus 318 ~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al 363 (525)
T TIGR00831 318 YVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALAL 363 (525)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHH
Confidence 45554433221 11 2467899999999 7899999998874
No 13
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.9e-18 Score=174.38 Aligned_cols=311 Identities=17% Similarity=0.189 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchH----hHHH--------------------------
Q 012343 111 LISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS----ELVQ-------------------------- 160 (465)
Q Consensus 111 li~~l~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~----~~~q-------------------------- 160 (465)
+++-=.+++.++.+...++.|+|.|..+-++..|++.|-.|++.|+ ++.+
T Consensus 8 ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a 87 (574)
T COG3263 8 ILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVA 87 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHH
Confidence 3333336667788888999999999999999999999999998765 1110
Q ss_pred -------------------------HhcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHH-
Q 012343 161 -------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVG- 214 (465)
Q Consensus 161 -------------------------l~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~- 214 (465)
+++++|.+++++|+++..|+.+.|-.+|.+++ +|.+.+.++-..+.-||-.++
T Consensus 88 ~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPmAvf 166 (574)
T COG3263 88 AGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPMAVF 166 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCceeee
Confidence 56889999999999999999999999998876 577888888888889997765
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHh
Q 012343 215 LLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKL 294 (465)
Q Consensus 215 ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~l 294 (465)
+.++++...++..+++ .+. +..-++...++.++..+.+.++..+++++++ -.+..+.+.+++..+..+.+++.+
T Consensus 167 LTitlieli~~get~l-~~~-~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n----Ld~GL~pil~la~~Ll~fs~t~ai 240 (574)
T COG3263 167 LTITLIELIAGGETNL-SWG-FLLGFLQQFGLGLLLGLGGGKLLLQLINRIN----LDSGLYPILALAGGLLIFSLTGAI 240 (574)
T ss_pred hhHHHHHHHhcccccc-CHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc----cccchhHHHHHHHHHHHHHHHHHh
Confidence 4455666555443322 111 1111223333333333334456666666662 347778899999999999999999
Q ss_pred CchHHHHHHHHHHHhcCCc--chhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 012343 295 GLSLELGSFMAGVMISTTD--FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHV-DILLASVILVIIVKTAVGTIV 371 (465)
Q Consensus 295 Gls~~lGaFlaGl~is~~~--~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~-~~~l~l~~~~vl~K~v~~~l~ 371 (465)
|-|+.++.+++|+++.|.+ .++.+.+..|.+.++.-.+.|...|+.++|+.+++.. .-++..+...++.|++++++.
T Consensus 241 GGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~ 320 (574)
T COG3263 241 GGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLG 320 (574)
T ss_pred cCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHh
Confidence 9999999999999999996 4567888889999999999999999999999998753 334555667889999999999
Q ss_pred HHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHH-HHHHHHHHHHH
Q 012343 372 TKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL-GTTALSLVTTP 429 (465)
Q Consensus 372 ~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll-~~v~lS~i~~P 429 (465)
..-+++++||+++++| ..-||.++++++....-.|.-+.++|.-+. .++++|.++..
T Consensus 321 l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG 378 (574)
T COG3263 321 LIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQG 378 (574)
T ss_pred hcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHcc
Confidence 9888999999999999 899999999999999999987776665554 55556666553
No 14
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.81 E-value=9.4e-17 Score=169.13 Aligned_cols=293 Identities=18% Similarity=0.197 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhCcCCccchH-------hHH----------H-----------
Q 012343 109 LRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS-------ELV----------Q----------- 160 (465)
Q Consensus 109 ~~li~~l~iil~~a~i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~-------~~~----------q----------- 160 (465)
...+.+..+++..+.....+.+|+..|.+..+++.|++.||.+++.+. |.. +
T Consensus 5 ~~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~ 84 (429)
T COG0025 5 LMLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELR 84 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHH
Confidence 356778888888999999999999999999999999999998877654 110 0
Q ss_pred --------------------------Hh--cCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHH
Q 012343 161 --------------------------LC--GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCA 212 (465)
Q Consensus 161 --------------------------l~--G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~ 212 (465)
++ ++++..++.+|+++++|+|.++.++.++.+ ...+..+++.+.+.+||..
T Consensus 85 ~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~ 163 (429)
T COG0025 85 RVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGV 163 (429)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHH
Confidence 23 678889999999999999999999999864 6788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 012343 213 VGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSD 292 (465)
Q Consensus 213 ~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae 292 (465)
+.+++.+.......++..+........+....+.+++..+++ ++..++.+++++.+..+........++..+..+.++|
T Consensus 164 giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG-~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~ 242 (429)
T COG0025 164 GIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLG-YLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAE 242 (429)
T ss_pred HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHH
Confidence 999888765544322221101122222222333344444444 5777888888764333455567788999999999999
Q ss_pred HhCchHHHHHHHHHHHhcCC---c-chhhHHHhhhcH----HHHHHHHHHHHhcchhhHhhHhHH-HHHHHHHHHHHHHH
Q 012343 293 KLGLSLELGSFMAGVMISTT---D-FAKHTLDQVEPI----RNLFAALFLSSIGMLIHVHFLWNH-VDILLASVILVIIV 363 (465)
Q Consensus 293 ~lGls~~lGaFlaGl~is~~---~-~~~~l~~~ie~i----~~~f~piFF~~iGl~i~~~~l~~~-~~~~l~l~~~~vl~ 363 (465)
.+|.|+.++..++|++.++. . ...+...+.+.+ ..++....|+..|++++....... +..++..+...++.
T Consensus 243 ~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~ 322 (429)
T COG0025 243 ALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLA 322 (429)
T ss_pred HhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988521 1 111122333333 347888889999999999887754 55667778889999
Q ss_pred HHHHHHHHHHHhC------CChHHHHHHHHHHhhHHHHHHHHHHHHH
Q 012343 364 KTAVGTIVTKLFG------YSMRTSFLVGVSLAQIGEFAFVLLSRAS 404 (465)
Q Consensus 364 K~v~~~l~~~~~g------~~~~~a~~vgl~L~~~Ge~slvla~~a~ 404 (465)
|++.++...+..+ .++++++++++ -++||.+++.++....
T Consensus 323 R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p 368 (429)
T COG0025 323 RPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIP 368 (429)
T ss_pred HHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHch
Confidence 9999999998743 68999999999 8999999999987544
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.75 E-value=1.8e-15 Score=164.05 Aligned_cols=258 Identities=14% Similarity=0.194 Sum_probs=169.8
Q ss_pred cCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchhhHHHH----H
Q 012343 163 GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGN-SGLLQGMVSM----G 237 (465)
Q Consensus 163 G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~-~~~~~~~~sl----~ 237 (465)
++++.+++++|+++|+|+|+.+..++++.+ .+.+.-+++.+.+.+||..+++++.+...+... .+.. ...++ .
T Consensus 128 ~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~-~~~~~~~~i~ 205 (559)
T TIGR00840 128 DIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPV-TIVDVFEGCA 205 (559)
T ss_pred CCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCc-cHHHHHHHHH
Confidence 358999999999999999999999999986 577888999999999999999988766554321 1111 11111 1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC---cc
Q 012343 238 KLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT---DF 314 (465)
Q Consensus 238 ~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~---~~ 314 (465)
..+...++.+++.++++ ++..++.|+... .+......+++.+++.+.++|.+|.|+.++++++|+++++. ..
T Consensus 206 ~f~~~~~GGiliG~v~G-~l~~~l~r~~~~----~~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~ 280 (559)
T TIGR00840 206 SFFVVTCGGLLVGVVFG-FLVAFITRFTHH----IRQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANM 280 (559)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccC
Confidence 11111222233334444 455566666532 23344566788888899999999999999999999999753 22
Q ss_pred hhhHHH----hhhcHHHHHHHHHHHHhcchhhHh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHH
Q 012343 315 AKHTLD----QVEPIRNLFAALFLSSIGMLIHVH-FLWNHVDILLASVILVIIVKTAVGTIVTKL------FGYSMRTSF 383 (465)
Q Consensus 315 ~~~l~~----~ie~i~~~f~piFF~~iGl~i~~~-~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~------~g~~~~~a~ 383 (465)
.++..+ -.+.+..+...+.|+.+|+.+... ..+ .+..++..++.+++.|+++++..... .+.++||.+
T Consensus 281 s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~-~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~ 359 (559)
T TIGR00840 281 SRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEW-NWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQL 359 (559)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhh
Confidence 222222 334444677899999999976322 222 23333444456678899888766543 347899999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHH-HHHHHHHHHHHHHH
Q 012343 384 LVGVSLAQIGEFAFVLLSRASNLHLVEGKMYL-LLLGTTALSLVTTP 429 (465)
Q Consensus 384 ~vgl~L~~~Ge~slvla~~a~~~giis~~~~~-~ll~~v~lS~i~~P 429 (465)
.+++ .+.||.+++.++...-+.+.-.++... ....++++|.++..
T Consensus 360 il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG 405 (559)
T TIGR00840 360 VIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQG 405 (559)
T ss_pred heee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHH
Confidence 9998 788999999988654333333333333 33344455655543
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.51 E-value=1.1e-11 Score=129.07 Aligned_cols=237 Identities=15% Similarity=0.183 Sum_probs=159.5
Q ss_pred HHHhhccHHHHHHHHhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 012343 174 SFLSMSSTAVVVKFLVEQNSN-NALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSI 252 (465)
Q Consensus 174 ~~ls~TS~~vv~~iL~e~~~l-~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~v 252 (465)
.+-.+|+++....++...|.. ++..+..+++.+++||+.+++++++.. +++ . .+..+ ....+.+ ++.
T Consensus 130 ~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~--i-~~~~L---~~a~~~~-~~l-- 197 (423)
T PRK14853 130 AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSE--L-NLEAL---LLALVPL-ALF-- 197 (423)
T ss_pred hhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCC--C-CHHHH---HHHHHHH-HHH--
Confidence 344789999999999998754 778888999999999999998888753 221 1 11221 1111111 111
Q ss_pred HHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC------------cchhhHHH
Q 012343 253 LSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT------------DFAKHTLD 320 (465)
Q Consensus 253 v~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~------------~~~~~l~~ 320 (465)
+++++ ++.++.+....+ .+.+.+.++..|+|+.+|+|++|+++|.. +..++++|
T Consensus 198 -------~~l~~-----~~V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~ 263 (423)
T PRK14853 198 -------WLLVQ-----KRVRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEH 263 (423)
T ss_pred -------HHHHH-----cCCchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHH
Confidence 11122 123333333333 33556688999999999999999999852 12467889
Q ss_pred hhhcHH-HHHHHHH-HHHhcchhhH-hhHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHH
Q 012343 321 QVEPIR-NLFAALF-LSSIGMLIHV-HFLWNHVD--ILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLV 385 (465)
Q Consensus 321 ~ie~i~-~~f~piF-F~~iGl~i~~-~~l~~~~~--~~l~l~~~~vl~K~v~~~l~~~~~----------g~~~~~a~~v 385 (465)
+++|+. .+++|+| |+.+|.++|. +.+.+... +.+.+++..+++|+++.+...+.. +.++++=.-+
T Consensus 264 ~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv 343 (423)
T PRK14853 264 RLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGV 343 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHH
Confidence 999997 6889999 9999999986 43423222 456777788899999987666542 3456665556
Q ss_pred HHHHhhHH-HHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012343 386 GVSLAQIG-EFAFVLLSRASN-LHLVEGKMYLLLLGTTALSLVTTPLLFKLIPN 437 (465)
Q Consensus 386 gl~L~~~G-e~slvla~~a~~-~giis~~~~~~ll~~v~lS~i~~Pll~r~~~~ 437 (465)
|+ ++..| +.++-+++.|.+ .+-..++.-.-++..++++.+++-.+.|...+
T Consensus 344 ~~-L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~~ 396 (423)
T PRK14853 344 AL-LAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRNR 396 (423)
T ss_pred HH-HHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 65 88888 788888999984 32222333444556777788888777776544
No 17
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.26 E-value=1.3e-09 Score=115.87 Aligned_cols=290 Identities=15% Similarity=0.145 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCcC------Cccch-H-------hH----------H--
Q 012343 109 LRLISDLVVVIVSAAIGGIIFSCLG---QPVIVGYLLAGSIIGPG------GLKFI-S-------EL----------V-- 159 (465)
Q Consensus 109 ~~li~~l~iil~~a~i~g~l~~rl~---lP~ivG~IlaGiiLGPs------gL~~I-~-------~~----------~-- 159 (465)
.--++-.+.+++++.+.++++++-| +|.-+.-++-|+++|-. +.+.. + |. .
T Consensus 34 ~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~s 113 (575)
T KOG1965|consen 34 SVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNS 113 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcc
Confidence 3445566677788899999999888 89988888888888732 22110 0 00 0
Q ss_pred -------H----------------------------H-------hcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCcc
Q 012343 160 -------Q----------------------------L-------CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNAL 197 (465)
Q Consensus 160 -------q----------------------------l-------~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~ 197 (465)
+ + .++++.+++++|+.+|+|+|..+..+++|.+ .+.+
T Consensus 114 gy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-vd~~ 192 (575)
T KOG1965|consen 114 GYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-VDPK 192 (575)
T ss_pred cceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-CCcc
Confidence 0 1 2367899999999999999999999999996 4556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHhhhcCchhHH
Q 012343 198 HGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLS-IYLTVTSILSWSFVPRFLKLMIQLSSQTNELY 276 (465)
Q Consensus 198 ~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~-~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~ 276 (465)
.-.++-|.+++||..+++++.....+...........+....++... +-..+.+..+ .+...+.|.+.-...+..|
T Consensus 193 Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~G-lisA~~lK~~~l~~~~~lE-- 269 (575)
T KOG1965|consen 193 LYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIG-LISALVLKFLYLRRTPSLE-- 269 (575)
T ss_pred eeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcHHH--
Confidence 66788999999999999999877665543321111111222222111 0011111111 2222334444332234455
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC---cchh----hHHHhhhcHHHHHHHHHHHHhcchh-hHhhHhH
Q 012343 277 QLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT---DFAK----HTLDQVEPIRNLFAALFLSSIGMLI-HVHFLWN 348 (465)
Q Consensus 277 ~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~---~~~~----~l~~~ie~i~~~f~piFF~~iGl~i-~~~~l~~ 348 (465)
....+.+....+.+||..|+|+++..+.+|+..++. ..+. ...+-.+.+.-+..-+-|+++|+.+ +......
T Consensus 270 ~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~ 349 (575)
T KOG1965|consen 270 SALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVY 349 (575)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceee
Confidence 445566777788889999999999999999999975 2222 2223334444566677799999633 3333333
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhC----------CChHHHHHHHHHHhhHHHHHHHHHHH
Q 012343 349 H-VDILLASVILVIIVKTAVGTIVTKLFG----------YSMRTSFLVGVSLAQIGEFAFVLLSR 402 (465)
Q Consensus 349 ~-~~~~l~l~~~~vl~K~v~~~l~~~~~g----------~~~~~a~~vgl~L~~~Ge~slvla~~ 402 (465)
. ..++.....++.++|..-++-...+.+ .+.+.-....|.=.-||.+++.++..
T Consensus 350 ~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~ 414 (575)
T KOG1965|consen 350 KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALG 414 (575)
T ss_pred echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhh
Confidence 3 234455566677777766544433322 23333444555434689888888753
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.10 E-value=2.7e-09 Score=106.28 Aligned_cols=240 Identities=15% Similarity=0.105 Sum_probs=159.2
Q ss_pred cCchHHHHHHHHHHhhccHHHHHHHHhhccc---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C-CchhhHHHH
Q 012343 163 GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS---NNALHGQVTIGTLILQDCAVGLLFALLPVLGGN--S-GLLQGMVSM 236 (465)
Q Consensus 163 G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~---l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~--~-~~~~~~~sl 236 (465)
+++...++.+++|+.+|+|.....+..+.+. ...+.-.++.+.+..||..++.++.+..-+... . .....|.
T Consensus 127 ~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv-- 204 (467)
T KOG4505|consen 127 NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWV-- 204 (467)
T ss_pred cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCcee--
Confidence 4567899999999999999998888876543 344455667888999999998887665433211 1 1111221
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC-cch
Q 012343 237 GKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-DFA 315 (465)
Q Consensus 237 ~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~-~~~ 315 (465)
...++.-+.|..+...+..++.+..+|.-.+.+--.+|++...-+++.+.+..+.+.+|++-.+-.|.||.+++=. -+.
T Consensus 205 ~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFs 284 (467)
T KOG4505|consen 205 CDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFS 284 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhh
Confidence 1112222223222222223555666666655434578999888889999999999999999999999999999954 344
Q ss_pred hhHHH-hhhcHHH-HHHHHHHHHhcchhhHhhHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh---CCChHHHHHH
Q 012343 316 KHTLD-QVEPIRN-LFAALFLSSIGMLIHVHFLWNH-----VDILLASVILVIIVKTAVGTIVTKLF---GYSMRTSFLV 385 (465)
Q Consensus 316 ~~l~~-~ie~i~~-~f~piFF~~iGl~i~~~~l~~~-----~~~~l~l~~~~vl~K~v~~~l~~~~~---g~~~~~a~~v 385 (465)
++..+ .+..+.| .+.-.||.+.|..++++.+... .|-.+++.+..+..|=+.+....+-. =.++||++++
T Consensus 285 k~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFv 364 (467)
T KOG4505|consen 285 KKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFV 364 (467)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHh
Confidence 43333 4566665 7788899999999999876531 22233443444444433333222211 1468999999
Q ss_pred HHHHhhHHHHHHHHHHHHHh
Q 012343 386 GVSLAQIGEFAFVLLSRASN 405 (465)
Q Consensus 386 gl~L~~~Ge~slvla~~a~~ 405 (465)
|. .+|.|.-++..+-.|..
T Consensus 365 Gh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 365 GH-FGPIGVGALYYALLARK 383 (467)
T ss_pred cc-CCCccHHHHHHHHHHHh
Confidence 99 99999888888777654
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.01 E-value=6e-08 Score=99.62 Aligned_cols=202 Identities=20% Similarity=0.205 Sum_probs=124.8
Q ss_pred hhccHHHHHHHHhhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 177 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 255 (465)
Q Consensus 177 s~TS~~vv~~iL~e~~~-l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~ 255 (465)
.+|+++-..-++.=.|. .....-..+++-+++||+.+++++++.. ++ + . +........+. +++.
T Consensus 123 ~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t~-~-i----~~~~L~~a~~~-~~~l----- 187 (373)
T TIGR00773 123 AATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY---TN-D-L----SMAALLVAAVA-IAVL----- 187 (373)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec---CC-C-C----CHHHHHHHHHH-HHHH-----
Confidence 34555555555444432 3333456678999999999988877642 21 1 1 11122222111 1111
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCc-----chhhHHHhhhcHH-HHH
Q 012343 256 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-----FAKHTLDQVEPIR-NLF 329 (465)
Q Consensus 256 ~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~-----~~~~l~~~ie~i~-~~f 329 (465)
+++++. +.++......+.+. ..+.....|+|+.+|++++|+++|+.+ ..+++++.++|.. .++
T Consensus 188 ----~~~~~~-----~v~~~~~y~~lgvl--lW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~li 256 (373)
T TIGR00773 188 ----AVLNRC-----GVRRLGPYMLVGVI--LWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLI 256 (373)
T ss_pred ----HHHHHc-----CCchhhHHHHHHHH--HHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHH
Confidence 122322 23443333232222 222337999999999999999999752 1356777777777 467
Q ss_pred HHHH-HHHhcchhhHhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHH-HHH
Q 012343 330 AALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIG-EFA 396 (465)
Q Consensus 330 ~piF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~vl~K~v~~~l~~~~~----------g~~~~~a~~vgl~L~~~G-e~s 396 (465)
+|+| |+..|.++|...+... ....+.+.+..+++|+++++...+.. |.++++-.-+|+ ++..| +.+
T Consensus 257 lPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~-L~GIGFTmS 335 (373)
T TIGR00773 257 LPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV-LCGIGFTMS 335 (373)
T ss_pred HHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 8999 9999999986544322 23356667778899999988776642 345666566666 88888 788
Q ss_pred HHHHHHHHh
Q 012343 397 FVLLSRASN 405 (465)
Q Consensus 397 lvla~~a~~ 405 (465)
+-+++.|.+
T Consensus 336 lfI~~LAf~ 344 (373)
T TIGR00773 336 IFIASLAFG 344 (373)
T ss_pred HHHHHHhcC
Confidence 888888884
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.58 E-value=6.7e-06 Score=86.05 Aligned_cols=234 Identities=16% Similarity=0.181 Sum_probs=141.2
Q ss_pred hhccHHHHHHHHhhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 177 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 255 (465)
Q Consensus 177 s~TS~~vv~~iL~e~~~-l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~ 255 (465)
.+|+++...-++.=.|. .....-..+++-+++||+.+++++++.. ++ + . +..+.....+.+. +.
T Consensus 138 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~-~-i----~~~~L~~a~~~~~-~l----- 202 (438)
T PRK14856 138 MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY---TT-N-L----KFAWLLGALGVVL-VL----- 202 (438)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---CC-C-C----cHHHHHHHHHHHH-HH-----
Confidence 45666666666654442 2334456678999999999988877642 21 1 1 1222222221111 11
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCcc---------------------
Q 012343 256 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDF--------------------- 314 (465)
Q Consensus 256 ~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~~--------------------- 314 (465)
+++++. +.+.......+. +.+-+....-|+|+.++..+.|+++|..+.
T Consensus 203 ----~~ln~~-----~v~~~~~Y~~~G--~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK14856 203 ----AVLNRL-----NVRSLIPYLLLG--VLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSG 271 (438)
T ss_pred ----HHHHHc-----CCccccHHHHHH--HHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccc
Confidence 112222 122222222222 223333466899999999999999986411
Q ss_pred ------------------------hhhHHHhhhcHHH-HHHHHH-HHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 012343 315 ------------------------AKHTLDQVEPIRN-LFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVG 368 (465)
Q Consensus 315 ------------------------~~~l~~~ie~i~~-~f~piF-F~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~ 368 (465)
.+++++.++|... +.+|+| |+..|..++.+.......+.+.+.+..++||.+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lGI 351 (438)
T PRK14856 272 ALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLGI 351 (438)
T ss_pred cccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHHH
Confidence 1345556666665 779999 99999999755322222345666777889999988
Q ss_pred HHHHHHh----------CCChHHHHHHHHHHhhHH-HHHHHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012343 369 TIVTKLF----------GYSMRTSFLVGVSLAQIG-EFAFVLLSRASNL--HLVEGKMYLLLLGTTALSLVTTPLLFKLI 435 (465)
Q Consensus 369 ~l~~~~~----------g~~~~~a~~vgl~L~~~G-e~slvla~~a~~~--giis~~~~~~ll~~v~lS~i~~Pll~r~~ 435 (465)
+...+.. |.++++-.-+|+ ++..| +.++-+++.|.+. +..-++.-.-++..++++.+++-++.|+.
T Consensus 352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L~~~ 430 (438)
T PRK14856 352 FLITFISEKLKITARPKGISWWHILGAGL-LAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYLFAL 430 (438)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7766542 345666555665 88888 7888889988843 32334444455677788888888777765
Q ss_pred hh
Q 012343 436 PN 437 (465)
Q Consensus 436 ~~ 437 (465)
+.
T Consensus 431 ~~ 432 (438)
T PRK14856 431 DK 432 (438)
T ss_pred ch
Confidence 43
No 21
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.34 E-value=8.2e-05 Score=76.94 Aligned_cols=231 Identities=19% Similarity=0.141 Sum_probs=136.3
Q ss_pred hhccHHHHHHHHhhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 177 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 255 (465)
Q Consensus 177 s~TS~~vv~~iL~e~~~-l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~ 255 (465)
.+|+++-..-++.=.|. .....-..+++-+++||+.+++++++.. + ++ . +..+.....+.+. +.+
T Consensus 130 mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY---t-~~-i----~~~~L~~a~~~~~-~l~---- 195 (389)
T PRK09560 130 AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY---T-SD-L----SLPALALAAIAIA-VLF---- 195 (389)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---C-CC-C----CHHHHHHHHHHHH-HHH----
Confidence 34555555555554432 3333456678999999999988877642 1 11 1 1122222221111 111
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCc-------chhhHHHhhhcHHHH
Q 012343 256 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-------FAKHTLDQVEPIRNL 328 (465)
Q Consensus 256 ~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~-------~~~~l~~~ie~i~~~ 328 (465)
++++. +.+.......+. +..-+....-|+|+.++..+.|+++|..+ ..++++|.++|...+
T Consensus 196 -----~ln~~-----~v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~ 263 (389)
T PRK09560 196 -----LLNRL-----GVTKLTPYLIVG--AILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAF 263 (389)
T ss_pred -----HHHHc-----CCccchHHHHHH--HHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhh
Confidence 12222 123322222222 22333346689999999999999999741 135788889998865
Q ss_pred H-HHHH-HHHhcchhhHhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHH-H
Q 012343 329 F-AALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIG-E 394 (465)
Q Consensus 329 f-~piF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~vl~K~v~~~l~~~~~----------g~~~~~a~~vgl~L~~~G-e 394 (465)
+ +|+| |+..|..++-..+... ..+...+.+..+++|+++++...+.. |.++++=.-+|. ++..| +
T Consensus 264 ~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFT 342 (389)
T PRK09560 264 AILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV-LCGIGFT 342 (389)
T ss_pred hhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHH
Confidence 5 9999 8999999853223221 12445666778899999988766542 345666555665 88888 7
Q ss_pred HHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 395 FAFVLLSRASN-LHLVEGKMYLLLLGTTALSLVTTPLLFKL 434 (465)
Q Consensus 395 ~slvla~~a~~-~giis~~~~~~ll~~v~lS~i~~Pll~r~ 434 (465)
.++-+++.|.+ .+-..++.-..++..++++.+++-.+.|.
T Consensus 343 mSLFIa~LAF~~~~~~~~~aKigIL~~S~~aai~g~~~l~~ 383 (389)
T PRK09560 343 MSLFIGSLAFGASEELLTEARLGILLGSLLSAILGYLLLRL 383 (389)
T ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888898884 21222333333445566666666666554
No 22
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.32 E-value=0.00011 Score=75.59 Aligned_cols=233 Identities=16% Similarity=0.164 Sum_probs=136.2
Q ss_pred hhccHHHHHHHHhhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 177 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 255 (465)
Q Consensus 177 s~TS~~vv~~iL~e~~~-l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~ 255 (465)
.+|+++...-++.=.|. .....--.+++-+++||+.+++++++.. ++ + . . ........+.+. +.+
T Consensus 126 ~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t~-~-i-~---~~~L~~A~~~~~-~l~---- 191 (383)
T PRK14854 126 SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---TK-S-L-S---LLSLSLGTLFIL-AMI---- 191 (383)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CC-C-c-c---HHHHHHHHHHHH-HHH----
Confidence 34555555555544442 2333444567889999999988877642 11 1 1 1 111111111111 111
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCc-----chhhHHHhhhcHH-HHH
Q 012343 256 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-----FAKHTLDQVEPIR-NLF 329 (465)
Q Consensus 256 ~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~-----~~~~l~~~ie~i~-~~f 329 (465)
+ .+|.. +.+....... ..+..-+....-|+|+.++..+.|+++|..+ ..++++|.++|.. .+.
T Consensus 192 -~----~nr~~----~v~~~~~Y~~--~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~I 260 (383)
T PRK14854 192 -I----CNRIF----KINRSSVYVV--LGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFI 260 (383)
T ss_pred -H----HHHhc----CCceehHHHH--HHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhh
Confidence 1 22211 1222222222 2222333456789999999999999999742 1367888888887 477
Q ss_pred HHHH-HHHhcchhhHhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHH-HHH
Q 012343 330 AALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIG-EFA 396 (465)
Q Consensus 330 ~piF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~vl~K~v~~~l~~~~~----------g~~~~~a~~vgl~L~~~G-e~s 396 (465)
+|+| |+..|..++-..+... ..+...+.+..+++|.++++...+.. +.++++-.-+|+ ++..| +.+
T Consensus 261 lPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmS 339 (383)
T PRK14854 261 LPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL-LCGIGFTMS 339 (383)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 9999 8999999843222221 12445666677899999887766542 345666556665 88888 788
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012343 397 FVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 435 (465)
Q Consensus 397 lvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~~ 435 (465)
+-+++.|.+.+-..++.-..++..++++.+++-.+.|+.
T Consensus 340 LFIa~LAF~~~~~~~~aKigIL~gS~~aai~G~~~l~~~ 378 (383)
T PRK14854 340 LFIGVLAFNDTHLLNAIKIGVVVGSVLSGFFGYIVLRFI 378 (383)
T ss_pred HHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999885322223333344456677777776666654
No 23
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.32 E-value=9e-05 Score=76.55 Aligned_cols=232 Identities=19% Similarity=0.151 Sum_probs=136.0
Q ss_pred hhccHHHHHHHHhhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 177 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 255 (465)
Q Consensus 177 s~TS~~vv~~iL~e~~~-l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~ 255 (465)
.+|+++-..-++.=.|. .....-..+++-+++||+.+++++++.- ++ + . +........+.+. +.
T Consensus 130 ~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~-~-i----~~~~L~~a~~~~~-~l----- 194 (388)
T PRK09561 130 AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY---TS-D-L----SMVSLGVAAVAIA-VL----- 194 (388)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---CC-C-c----cHHHHHHHHHHHH-HH-----
Confidence 34555555555544432 3333456678999999999988877642 11 1 1 1112222211111 11
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCc-----chhhHHHhhhcHHH-HH
Q 012343 256 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-----FAKHTLDQVEPIRN-LF 329 (465)
Q Consensus 256 ~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~-----~~~~l~~~ie~i~~-~f 329 (465)
+++++. +.+.......+. +..-+....-|+|+.++..+.|+++|..+ ..++++|.++|... +.
T Consensus 195 ----~~ln~~-----~v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~I 263 (388)
T PRK09561 195 ----AVLNLC-----GVRRTSVYILVG--VVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLI 263 (388)
T ss_pred ----HHHHHc-----CCccchHHHHHH--HHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhhee
Confidence 112222 223322222222 22333346789999999999999999741 13678889999976 47
Q ss_pred HHHH-HHHhcchhhHhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHH-HHH
Q 012343 330 AALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIG-EFA 396 (465)
Q Consensus 330 ~piF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~vl~K~v~~~l~~~~~----------g~~~~~a~~vgl~L~~~G-e~s 396 (465)
+|+| |+..|..++-..+... ..+...+.+..+++|.++++...+.. |.++++-.-+|+ ++..| +.+
T Consensus 264 lPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmS 342 (388)
T PRK09561 264 LPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV-LCGIGFTMS 342 (388)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 9999 8999998843222211 12445666677899999888766542 345666555665 88888 778
Q ss_pred HHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012343 397 FVLLSRASNL--HLVEGKMYLLLLGTTALSLVTTPLLFKLI 435 (465)
Q Consensus 397 lvla~~a~~~--giis~~~~~~ll~~v~lS~i~~Pll~r~~ 435 (465)
+-+++.|.+. +...++.-..++..++++.+++-.+.|..
T Consensus 343 LFIa~LAF~~~~~~~~~~aKigIL~~S~~sai~g~~~l~~~ 383 (388)
T PRK09561 343 IFIASLAFGGVDPELINYAKLGILIGSLLSAVIGYSWLRKV 383 (388)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888852 11222333334455666777766665543
No 24
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.32 E-value=0.00013 Score=76.20 Aligned_cols=226 Identities=16% Similarity=0.114 Sum_probs=130.2
Q ss_pred hhccHHHHHHHHhhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 177 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 255 (465)
Q Consensus 177 s~TS~~vv~~iL~e~~~-l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~ 255 (465)
.+|+++...-++.=.|. .....-..+++-+++||+.+++++++.- ++ + . +........+.+. +.
T Consensus 133 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~-~-i----~~~~L~~a~~~~~-~l----- 197 (423)
T PRK14855 133 MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---TS-G-L----NLLALLLAALTWA-LA----- 197 (423)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---CC-C-C----CHHHHHHHHHHHH-HH-----
Confidence 45666666666655543 2333456678999999999988877642 11 1 1 1122222211111 11
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC-c-c-------------------
Q 012343 256 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-D-F------------------- 314 (465)
Q Consensus 256 ~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~-~-~------------------- 314 (465)
+++++. +.+.......+. +..-+....-|+|+.++..+.|+++|.. + .
T Consensus 198 ----~~ln~~-----~v~~~~~Y~~~G--~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (423)
T PRK14855 198 ----LLAGRL-----GVTSLKIYAVLG--ALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVV 266 (423)
T ss_pred ----HHHHHc-----CCccccHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhh
Confidence 112222 122222222222 2233334668999999999999999864 1 1
Q ss_pred -----------------hhhHHHhhhcHHH-HHHHHH-HHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 315 -----------------AKHTLDQVEPIRN-LFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLF 375 (465)
Q Consensus 315 -----------------~~~l~~~ie~i~~-~f~piF-F~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~ 375 (465)
.++++|.++|... +.+|+| |+..|..++-..+ . .+.+.+.+..++||.++++...+..
T Consensus 267 ~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~-~--pv~lGI~~GLvvGK~lGI~~~s~la 343 (423)
T PRK14855 267 GARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGL-G--TVSLGVFLGLLLGKPLGVVGGAWLA 343 (423)
T ss_pred hHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCC-C--cHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1346666777765 579999 8999999853332 1 2445666677889999887766542
Q ss_pred ----------CCChHHHHHHHHHHhhHH-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 012343 376 ----------GYSMRTSFLVGVSLAQIG-EFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLF 432 (465)
Q Consensus 376 ----------g~~~~~a~~vgl~L~~~G-e~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~ 432 (465)
|.++++=.-+|+ ++..| +.++-+++.|.+.+-.-++.-.-++..++++.+++-.+.
T Consensus 344 vkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L 410 (423)
T PRK14855 344 VRLGLASLPRRVNWLHMLGAGL-LAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWL 410 (423)
T ss_pred HHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666555655 88888 788888898885332222223333344555555544443
No 25
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=97.99 E-value=0.00097 Score=67.05 Aligned_cols=230 Identities=17% Similarity=0.188 Sum_probs=135.6
Q ss_pred hhccHHHHHHHHhhcc-cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 177 SMSSTAVVVKFLVEQN-SNNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 255 (465)
Q Consensus 177 s~TS~~vv~~iL~e~~-~l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~ 255 (465)
++|+++-..-++.=.| ...+..--.+++-+++||.-++++.++.. ++. . ++..+ .... ..+++..+
T Consensus 133 ~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFY---t~~--L-s~~al---~~a~-~~i~vL~~--- 199 (390)
T COG3004 133 MATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFY---TTD--L-SMAAL---GIAA-LAIAVLAV--- 199 (390)
T ss_pred cHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhh---cCC--c-cHHHH---HHHH-HHHHHHHH---
Confidence 4556666555655544 23444556678999999999988887643 111 1 11111 1111 11111111
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHhcCC-----cchhhHHHhhhcHH-HH
Q 012343 256 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTT-----DFAKHTLDQVEPIR-NL 328 (465)
Q Consensus 256 ~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~ia-e~lGls~~lGaFlaGl~is~~-----~~~~~l~~~ie~i~-~~ 328 (465)
+++++- .....|.+ +.. +.|++ ..-|+|..++..+.|+++|-. ..-|+++|.+.|.. .+
T Consensus 200 ------lN~~~v---~~l~~Y~~--~gv---iLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~ 265 (390)
T COG3004 200 ------LNRLGV---RRLSPYLL--VGV---ILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFF 265 (390)
T ss_pred ------HHHhCc---hhhhHHHH--HHH---HHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHH
Confidence 233211 11222222 222 23443 468999999999999999954 23367788888886 47
Q ss_pred HHHHH-HHHhcchhh---HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhHH-
Q 012343 329 FAALF-LSSIGMLIH---VHFLWNHVDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQIG- 393 (465)
Q Consensus 329 f~piF-F~~iGl~i~---~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~----------g~~~~~a~~vgl~L~~~G- 393 (465)
.+|+| |+..|.+++ ...+.+. +.+.+.+..+++|.++++..++.. |.++++-.-+++ ++..|
T Consensus 266 IlPlFaFaNAGvsl~g~~~~~l~s~--l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~i-LcGIGF 342 (390)
T COG3004 266 ILPLFAFANAGVSLQGVSLSGLTSP--LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSI-LCGIGF 342 (390)
T ss_pred HHHHHHHccCCcccccccccccccc--hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHH-HHhhhH
Confidence 79999 999998887 3333332 234556667789988877655431 345555555555 88888
Q ss_pred HHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012343 394 EFAFVLLSRASNLH-LVEGKMYLLLLGTTALSLVTTPLLFKLIP 436 (465)
Q Consensus 394 e~slvla~~a~~~g-iis~~~~~~ll~~v~lS~i~~Pll~r~~~ 436 (465)
+.++-+++.|.+.. ......-.-++..+..|.+++-...|...
T Consensus 343 TMSlFI~~LAf~~~~~~~~~~klgIL~gS~~Sai~G~~~L~~~~ 386 (390)
T COG3004 343 TMSLFIASLAFGSEDELQTAAKLGILVGSFISAILGYSYLRLLL 386 (390)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67788888887652 33344444455666677777766666543
No 26
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.91 E-value=3.6e-05 Score=79.38 Aligned_cols=219 Identities=20% Similarity=0.208 Sum_probs=117.2
Q ss_pred hhccHHHHHHHHhhccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 177 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 255 (465)
Q Consensus 177 s~TS~~vv~~iL~e~~~-l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~ll~l~~f~lv~~vv~~ 255 (465)
.+|+++...-++.=.|. .....-..+++.+++||+.+++++++.. ++ + .+........+. +++.
T Consensus 126 ~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FY---t~-~-----i~~~~L~~a~~~-~~~l----- 190 (378)
T PF06965_consen 126 MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFY---TD-G-----ISLLWLLLAAAA-LLLL----- 190 (378)
T ss_dssp S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------------HHHHHHHHHH-HHHH-----
T ss_pred ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeee---CC-C-----CCHHHHHHHHHH-HHHH-----
Confidence 45677776666655542 2333456788999999999998887652 11 1 122222222111 1111
Q ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHhcCCcch---------hhHHHhhhcH
Q 012343 256 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS-DKLGLSLELGSFMAGVMISTTDFA---------KHTLDQVEPI 325 (465)
Q Consensus 256 ~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~ia-e~lGls~~lGaFlaGl~is~~~~~---------~~l~~~ie~i 325 (465)
+.+++.. .++...|. .+. . ..|.+ ..-|+|+.++..+.|+++|..+.. ++++|.++|.
T Consensus 191 ----~~l~r~~---v~~~~~Y~--~~G--~-~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~ 258 (378)
T PF06965_consen 191 ----FVLNRLG---VRSLWPYL--LLG--I-LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPW 258 (378)
T ss_dssp ----HHHHHTT------THHHH--HHH--H-HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHH
T ss_pred ----HHHHHCC---CceehHHH--HHH--H-HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhh
Confidence 1122221 11222232 222 2 33444 568999999999999999986432 4788888888
Q ss_pred HH-HHHHHH-HHHhcchhhHhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhhH
Q 012343 326 RN-LFAALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSFLVGVSLAQI 392 (465)
Q Consensus 326 ~~-~f~piF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~vl~K~v~~~l~~~~~----------g~~~~~a~~vgl~L~~~ 392 (465)
.+ +.+|+| |+..|..++-..+... ..+.+.+.+..+++|.++.+...+.. |.++++=.-+|. ++..
T Consensus 259 v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~-LaGI 337 (378)
T PF06965_consen 259 VAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL-LAGI 337 (378)
T ss_dssp HHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH-HTT-
T ss_pred hhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHH
Confidence 75 669999 9999999886654322 22334556677899999987765532 234454444555 8888
Q ss_pred H-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 012343 393 G-EFAFVLLSRASNLHLVEGKMYLLLLGTTAL 423 (465)
Q Consensus 393 G-e~slvla~~a~~~giis~~~~~~ll~~v~l 423 (465)
| +.++-+++.|.+..-..++.-..++..+.+
T Consensus 338 GFTmSLFIa~LAF~~~~~~~~aK~gIL~~S~~ 369 (378)
T PF06965_consen 338 GFTMSLFIAGLAFDDPALQNAAKLGILIGSLL 369 (378)
T ss_dssp -HHHHHHHHHHHSTT-SSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHHHHHHH
Confidence 8 788999999988744444433333333333
No 27
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=97.37 E-value=0.018 Score=57.00 Aligned_cols=134 Identities=21% Similarity=0.387 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHHhcCCcch-hhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHH
Q 012343 284 CLLSAWCSDKLGLSLELGSFMAGVMISTTDFA-KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVII 362 (465)
Q Consensus 284 ~~~~~~iae~lGls~~lGaFlaGl~is~~~~~-~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl 362 (465)
......+++.++++..+|-.++|+++...-.+ -+-.+.++.+.++-..++....|+++|++.+.+++..........++
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~ 83 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVL 83 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34467889999999999999999999865221 01124567777888888899999999999988765443333333333
Q ss_pred HH-HHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 012343 363 VK-TAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLG 419 (465)
Q Consensus 363 ~K-~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~ 419 (465)
.- +..+......++.+..+++.+|..+++-+ .-+....-.+.+..+.+....++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~ 139 (273)
T TIGR00932 84 VPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLG 139 (273)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHH
Confidence 33 44444456678999999999999887664 233444555666666554444433
No 28
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.25 E-value=0.0089 Score=60.42 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=95.2
Q ss_pred HHHHHHHHH--hCchHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHH
Q 012343 285 LLSAWCSDK--LGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVII 362 (465)
Q Consensus 285 ~~~~~iae~--lGls~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl 362 (465)
++.+++++. ..+...+=+++.|+++.|.+. +..+..++=..+.+|+|-+..|+++|++.+.+...-.+.+.+..+.
T Consensus 153 Lga~gLA~ip~~~lv~lilpILiGmilGNld~--~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~ 230 (312)
T PRK12460 153 LGAAGLANIPIMALVAALLPLVLGMILGNLDP--DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTI 230 (312)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhccch--hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHH
Confidence 345555554 233447778899999998532 3445555555678999999999999999998764444444444445
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHH--HHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 012343 363 VKTAVGTIVTKLFGYSMRTSFLVG--VSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL-GTTALSLVTTPLLFKLIPNV 438 (465)
Q Consensus 363 ~K~v~~~l~~~~~g~~~~~a~~vg--l~L~~~Ge~slvla~~a~~~giis~~~~~~ll-~~v~lS~i~~Pll~r~~~~~ 438 (465)
.-....+...|.+|.+.+.++.+| .+-+--|--++.-++-..+ -. .+..+..+ ..+++|.+++|++..|.++.
T Consensus 231 ~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~~--~~-~~~Ataqvaa~vivTail~P~~t~~~~k~ 306 (312)
T PRK12460 231 VTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSLA--PV-AAAATAQVAASVIVTAILTPLLTSWVAKK 306 (312)
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666688899988888888 6555555333322221111 11 23333333 56677999999999987653
No 29
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.16 E-value=0.032 Score=62.08 Aligned_cols=132 Identities=19% Similarity=0.291 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCcchh-hHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHH
Q 012343 278 LAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLAS 356 (465)
Q Consensus 278 l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~~~~-~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l 356 (465)
...++.......++..+|+++.+|=.++|+++.....+- .-.+.++.+.++-..++.+.+|+.+|++.++.....++.+
T Consensus 11 ~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~ 90 (621)
T PRK03562 11 LIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGG 90 (621)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 344555566778889999999999999999998652211 1134577788899999999999999999998764433332
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcH
Q 012343 357 VILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEG 411 (465)
Q Consensus 357 ~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~ 411 (465)
...-++.-...++.....+|.++..++.+|..++.-+. +++ ...-.+.+..+.
T Consensus 91 g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-aiv-~~~L~e~~~l~t 143 (621)
T PRK03562 91 GALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-AIA-MQAMNERNLMVT 143 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HHH-HHHHHHhccccC
Confidence 22222223333445556779999999999988776653 343 334445555443
No 30
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.061 Score=56.64 Aligned_cols=141 Identities=20% Similarity=0.263 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC--cchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHH-H
Q 012343 277 QLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDI-L 353 (465)
Q Consensus 277 ~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~--~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~-~ 353 (465)
....+..+.....+.+.+|+++.+|-.++|+++.+. ..-.+-.+.++-+.++=..+....+|+.+|++.+++.... .
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~ 90 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVG 90 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhh
Confidence 344555666677899999999999999999999983 2222334555556677777777899999999999876433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 012343 354 LASVILVIIVKTAVGTIVTK-LFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLG 419 (465)
Q Consensus 354 l~l~~~~vl~K~v~~~l~~~-~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~ 419 (465)
.......+..=++.+..... .++.+++++...|..++.-+. + +....-.+.|..+.+.-...+.
T Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~-~-i~~~iL~e~~~~~~~~g~~~l~ 155 (397)
T COG0475 91 LGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSST-A-IVLKILMELGLLKTREGQLILG 155 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-H-HHHHHHHHhccccchHHHHHHH
Confidence 22222222222222221222 579999999999987776652 2 2333444555555554444443
No 31
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.92 E-value=0.064 Score=58.86 Aligned_cols=137 Identities=18% Similarity=0.304 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCcchh-hHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHH
Q 012343 280 AVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVI 358 (465)
Q Consensus 280 ~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~~~~-~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~ 358 (465)
++..++.+..++..++.+..+|=.++|+++.....+. +-.+.++.+.++-..++...+|+++|++.+...........+
T Consensus 14 ~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~ 93 (558)
T PRK10669 14 GLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAI 93 (558)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHH
Confidence 3445566677888899999999999999998752211 112456677788888888899999999988765332222222
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 012343 359 LVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL 418 (465)
Q Consensus 359 ~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll 418 (465)
.-.+.=+..++.....++.++.+++.+|..++.-+. .++...-.+.|.++.+.-...+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~G~~~l 151 (558)
T PRK10669 94 AQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQRGQIAI 151 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcchHHHH
Confidence 222222334444556678999999998887766432 3445556677777765554443
No 32
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.81 E-value=0.11 Score=57.67 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCcchh-hHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHH
Q 012343 279 AAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASV 357 (465)
Q Consensus 279 ~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~~~~-~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~ 357 (465)
..++.......++..+|+++.+|=.++|+++.....+. +-.+.++.+.++-..++.+.+|+++|++.++.....++.+.
T Consensus 12 ~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g 91 (601)
T PRK03659 12 LFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVG 91 (601)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33444555667888999999999999999998752210 11244667778888888899999999999886543222221
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHH
Q 012343 358 ILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGK 412 (465)
Q Consensus 358 ~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~ 412 (465)
..-++.-++.........|.++..++.+|..++.-+. +++ ...-.+.|..+.+
T Consensus 92 ~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SST-aiv-~~iL~e~~~~~t~ 144 (601)
T PRK03659 92 AAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSST-AMA-LQLMREKGMNRSE 144 (601)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHH-HHHHHHcccccCc
Confidence 1111111222222344568888888888876665442 333 3344455555443
No 33
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.0012 Score=71.20 Aligned_cols=225 Identities=16% Similarity=0.218 Sum_probs=133.1
Q ss_pred CchHHHHHHHHHHhhccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCc-----hhhHHHH
Q 012343 164 AKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLG--GNSGL-----LQGMVSM 236 (465)
Q Consensus 164 ~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ll~al~~~l~--~~~~~-----~~~~~sl 236 (465)
.+...-+++|...|+.+|..|..+.+|... |.-.==++.|.+.+||.+.+++.-+...+. ++.+. ..+..++
T Consensus 161 ~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sF 239 (670)
T KOG1966|consen 161 IGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSF 239 (670)
T ss_pred chHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEE
Confidence 346788999999999999999999999864 333333567899999998877765543332 11110 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC---c
Q 012343 237 GKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT---D 313 (465)
Q Consensus 237 ~~~ll~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~---~ 313 (465)
..+.+ +.+++..+.+ ++.....|++ ++.+-+..+.++.....++..+|..++|++++--++|+..+.. .
T Consensus 240 fVVsl---GG~lvGivfa-fl~sl~tkft----~~vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~N 311 (670)
T KOG1966|consen 240 FVVSL---GGALVGIVFA-FLASLVTKFT----KHVRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEAN 311 (670)
T ss_pred EEEec---CchhHHHHHH-HHHHHHHHhh----cceeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 10000 1111111111 2222223333 2345455677788888888999999999999999999999875 2
Q ss_pred chhhHHHhhhc----HHHHHHHHHHHHhcchhhHhhHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHh------CCChHH
Q 012343 314 FAKHTLDQVEP----IRNLFAALFLSSIGMLIHVHFLWNHV--DILLASVILVIIVKTAVGTIVTKLF------GYSMRT 381 (465)
Q Consensus 314 ~~~~l~~~ie~----i~~~f~piFF~~iGl~i~~~~l~~~~--~~~l~l~~~~vl~K~v~~~l~~~~~------g~~~~~ 381 (465)
..++....++. +...-.++-|...|.+.--. +.+| ..+.+-++...+-|.+++....++. +++..|
T Consensus 312 is~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~D 389 (670)
T KOG1966|consen 312 ISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVD 389 (670)
T ss_pred cchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccc
Confidence 22222222222 23456677788888876433 2233 2333334455677777766666543 345666
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 012343 382 SFLVGVSLAQIGEFAFVLL 400 (465)
Q Consensus 382 a~~vgl~L~~~Ge~slvla 400 (465)
-..++. =+-||.+++.+.
T Consensus 390 Qfimsy-GGLRGAiaF~LV 407 (670)
T KOG1966|consen 390 QFIMSY-GGLRGAIAFGLV 407 (670)
T ss_pred eeeeec-CCcchhhheeEE
Confidence 666555 245776665554
No 34
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.50 E-value=0.11 Score=57.08 Aligned_cols=136 Identities=16% Similarity=0.171 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCcch---hhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHH
Q 012343 280 AVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFA---KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLAS 356 (465)
Q Consensus 280 ~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~~~---~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l 356 (465)
.+.++.....+++.+|+...++-.++|+++.....+ .+-.+..+.+.++.+++.....|+++|++.+...+...+.+
T Consensus 14 ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~l 93 (562)
T PRK05326 14 LLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSL 93 (562)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHH
Confidence 344445566778888999999999999999876322 11123456678899999999999999999988776544433
Q ss_pred HH-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-CcHHHHHHH
Q 012343 357 VI-LVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHL-VEGKMYLLL 417 (465)
Q Consensus 357 ~~-~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~gi-is~~~~~~l 417 (465)
.. .+++.=.+.+....+.++.++.+++.+|..+++-.-. +....-.+.|+ +++++...+
T Consensus 94 a~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a--~v~~iL~~~~l~l~~~v~~~l 154 (562)
T PRK05326 94 ATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA--AVFSLLRGKGLNLKERVASTL 154 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH--HHHHHHhccCCCcchhHHhHh
Confidence 33 3333333334455567899999999999877766532 33344455663 455544444
No 35
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.14 E-value=0.27 Score=56.70 Aligned_cols=140 Identities=15% Similarity=0.236 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhcCCcch--h---------hHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHH
Q 012343 283 FCLLSAWCSDKLGLSLELGSFMAGVMISTTDFA--K---------HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVD 351 (465)
Q Consensus 283 l~~~~~~iae~lGls~~lGaFlaGl~is~~~~~--~---------~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~ 351 (465)
++-.+.++...+|...++|=.++|+++...-.+ + +-.+.++.+.++-..+|.+.+|+.+|++.+.....
T Consensus 54 ~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k 133 (832)
T PLN03159 54 TTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGK 133 (832)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcch
Confidence 333445556667777777888888888754111 1 12235677778888889999999999999876532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC------hHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 012343 352 ILLASVILVIIVKTAVGTIVTKLFGYS------MRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALS 424 (465)
Q Consensus 352 ~~l~l~~~~vl~K~v~~~l~~~~~g~~------~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS 424 (465)
..+...+..++.=++.++....+++.. ....+.+|..++.-+ ++ +++.+-.+.|+.+.+.-.+.+.+++++
T Consensus 134 ~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts-~p-Vv~riL~Elkll~s~~GrlaLsaavv~ 210 (832)
T PLN03159 134 KALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTA-FP-VLARILAEIKLINTELGRIAMSAALVN 210 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhh-HH-HHHHHHHHcCcccCcHHHHHHHHHHHH
Confidence 222221111222222222222222211 112345555444332 22 555566677887777666655555444
No 36
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.03 E-value=0.26 Score=50.14 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=91.0
Q ss_pred HhCchHHHHHHHHHHHhcC-C-cchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHH-HHHHHHHHHHHHHHHHH
Q 012343 293 KLGLSLELGSFMAGVMIST-T-DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDI-LLASVILVIIVKTAVGT 369 (465)
Q Consensus 293 ~lGls~~lGaFlaGl~is~-~-~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~-~l~l~~~~vl~K~v~~~ 369 (465)
.-++++.+=|.+.|++++| . ...+...+-++.-...++.+=-+..|.+++++.+.+.... ++..++.+...=.++.+
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~ 102 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYW 102 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 3577888889999999998 4 3444444445544557777777899999999998875442 33333333344444445
Q ss_pred HHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 012343 370 IVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL---GTTALSLVTTPLLFKLI 435 (465)
Q Consensus 370 l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll---~~v~lS~i~~Pll~r~~ 435 (465)
+..|.+|.+++.+..+|.+.+--|.-+.+-..-..+.+ ++|.-..+. ..-++.+++-|.+.++.
T Consensus 103 lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 103 LGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 55599999999999999999999876655555444433 222222222 22234556667776664
No 37
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=95.45 E-value=2.7 Score=43.91 Aligned_cols=107 Identities=21% Similarity=0.253 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHH-HHHHhC-----chHHHHHHHHHHHhcCC----cchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHh
Q 012343 278 LAAVAFCLLSAW-CSDKLG-----LSLELGSFMAGVMISTT----DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLW 347 (465)
Q Consensus 278 l~~lal~~~~~~-iae~lG-----ls~~lGaFlaGl~is~~----~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~ 347 (465)
+..+++|+.+++ +.+.++ +....+|++.|+++++. +..+-..+.++.+.++-+-+|.+..=|++.+..+.
T Consensus 224 ~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~ 303 (404)
T COG0786 224 LAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELA 303 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 455666666654 455544 56789999999999986 22223456788888999999999999999999988
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 012343 348 NHVD-ILLASVILVIIVKTAVGTIVTKLFGYSMRTSFL 384 (465)
Q Consensus 348 ~~~~-~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~ 384 (465)
+.+. +++++.+-.++.-+...+...|..|.+.-.+..
T Consensus 304 ~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 304 DLALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 7543 344444455666677777888888887444433
No 38
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=95.37 E-value=0.45 Score=51.99 Aligned_cols=117 Identities=16% Similarity=0.223 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHH
Q 012343 280 AVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVIL 359 (465)
Q Consensus 280 ~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~ 359 (465)
.++.+.....+++.+++...++-.++|++++..+...++.-.-+.+..+++|......|+++|.+.+..++..+..+.+.
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~ 85 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFL 85 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34444455677888889999999999998885432211110011234688999999999999999998887554444333
Q ss_pred -HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHH
Q 012343 360 -VIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFA 396 (465)
Q Consensus 360 -~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~s 396 (465)
+++.-.++++......++++..++.+|..+++-.-.+
T Consensus 86 ~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva 123 (525)
T TIGR00831 86 LVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence 3333333344444467899999999999998887543
No 39
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.32 E-value=0.54 Score=48.13 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=96.4
Q ss_pred HHHHHHHHhCchHHHHHHHHHHHhcCC-cchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHH
Q 012343 286 LSAWCSDKLGLSLELGSFMAGVMISTT-DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVK 364 (465)
Q Consensus 286 ~~~~iae~lGls~~lGaFlaGl~is~~-~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K 364 (465)
.-....+..|+++..=|.+.|++++.- +..++..+-++--....+.+=-+..|++++++.+.+...-.+......+..-
T Consensus 27 ~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t 106 (334)
T COG2855 27 GAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSST 106 (334)
T ss_pred hchHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHH
Confidence 333445556777888889999999854 3333333444433456666666789999999999876555566666677777
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH---HHHHHHHHh
Q 012343 365 TAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSL---VTTPLLFKL 434 (465)
Q Consensus 365 ~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~---i~~Pll~r~ 434 (465)
++.++...+.+|.|++.++.+|.+-+--|.-+..-.+-. .+-=++|+-..+..++++++ +.-|.+..+
T Consensus 107 ~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pv--ika~~~eva~aIa~V~lfgtia~llyP~l~~~ 177 (334)
T COG2855 107 FLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPV--IKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPL 177 (334)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCc--CCCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999888886444333221 23334555555545555543 333444433
No 40
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.10 E-value=1.1 Score=46.33 Aligned_cols=140 Identities=10% Similarity=0.095 Sum_probs=83.7
Q ss_pred hCchHHHHHHHHHHHhcCCc---chhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHH-HH
Q 012343 294 LGLSLELGSFMAGVMISTTD---FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAV-GT 369 (465)
Q Consensus 294 lGls~~lGaFlaGl~is~~~---~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~-~~ 369 (465)
.++++.+=|.+.|++++|.- ..++...-++--...++-+=-+..|++++++.+.+.....+......+..-+.. .+
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 47888888999999999842 222222222222345555556789999999999876544444433334444444 45
Q ss_pred HHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH---HHHHHHHHHHHHhh
Q 012343 370 IVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT---ALSLVTTPLLFKLI 435 (465)
Q Consensus 370 l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v---~lS~i~~Pll~r~~ 435 (465)
+..|.+|.+++.+..+|.+-+--|.-+.+-.+-..+.+ ++|.-..+..++ ++.+++-|.+.++.
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 55588999999999999999988865555444333321 222222222222 23455667665543
No 41
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=94.54 E-value=0.17 Score=51.19 Aligned_cols=132 Identities=11% Similarity=0.118 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC
Q 012343 299 ELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLF-GY 377 (465)
Q Consensus 299 ~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~-g~ 377 (465)
.+=.++.|+++.|-+ ++..+.+.|-....+|+|-...|..+|++.+.+....-+++-+..++.--...++.-|+. |.
T Consensus 174 ~llP~iiG~iLGNLD--~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~~~ 251 (314)
T PF03812_consen 174 ALLPIIIGMILGNLD--PDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLILKG 251 (314)
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHcCC
Confidence 445688999999763 456677777788999999999999999999987533222222222222223344555543 33
Q ss_pred ChHHHHHHHHHHhhHHHHH----HHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 012343 378 SMRTSFLVGVSLAQIGEFA----FVLLSRASNLHLVEGKMYLL-LLGTTALSLVTTPLLFKLIPN 437 (465)
Q Consensus 378 ~~~~a~~vgl~L~~~Ge~s----lvla~~a~~~giis~~~~~~-ll~~v~lS~i~~Pll~r~~~~ 437 (465)
+..- |+..+.....+ ..+++.--+..-.. +..+. +...+++|.+++|++.+++++
T Consensus 252 ~g~a----G~A~sstAGnavatPaaiA~~dP~~~~~~-~~ATaQvAaavIvTail~P~lt~~~~k 311 (314)
T PF03812_consen 252 NGVA----GAAISSTAGNAVATPAAIAAADPSFAPYA-ASATAQVAAAVIVTAILTPILTSWWAK 311 (314)
T ss_pred CCce----eehHHhhhhhhhhhhHHHHHhChhhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 33333333222 22222211121111 22233 335667899999999998764
No 42
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=94.46 E-value=1.6 Score=45.86 Aligned_cols=96 Identities=20% Similarity=0.219 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 012343 299 ELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYS 378 (465)
Q Consensus 299 ~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~ 378 (465)
.+-....|++.+-.+..+.+ +--+++..+++=+||+.+|+..|+..+.+ ...++.+.++.+.+-.+..+...|++|.|
T Consensus 243 il~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl~k~~ 320 (378)
T PF05684_consen 243 ILTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGKLFKID 320 (378)
T ss_pred HHHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44556667776656655444 56678889999999999999999999888 44445556667788888888999999999
Q ss_pred hHHHHHHHHHHhhHHHHHHH
Q 012343 379 MRTSFLVGVSLAQIGEFAFV 398 (465)
Q Consensus 379 ~~~a~~vgl~L~~~Ge~slv 398 (465)
..+-.. +. .+..|..+-.
T Consensus 321 l~~~~v-AS-~AnIGGpaTA 338 (378)
T PF05684_consen 321 LFELLV-AS-NANIGGPATA 338 (378)
T ss_pred HHHHHH-Hh-hcccCCcchH
Confidence 765444 43 6777755543
No 43
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=94.36 E-value=0.45 Score=48.02 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC
Q 012343 299 ELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLF-GY 377 (465)
Q Consensus 299 ~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~-g~ 377 (465)
.+=.++.|+++.|-+ +++.+.+.+-....+|+|-...|..+|++.+.+.....+++-+.+++.--...++.-|+. |.
T Consensus 174 ~ilPlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~~g~ 251 (314)
T TIGR00793 174 AVLPFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFIGGG 251 (314)
T ss_pred HHHHHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHhcCC
Confidence 455688999999873 345666777778999999999999999999877532222222222233334445556665 33
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHH-HHHHHHHHHHHHHHHhhhh
Q 012343 378 SMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL-GTTALSLVTTPLLFKLIPN 437 (465)
Q Consensus 378 ~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll-~~v~lS~i~~Pll~r~~~~ 437 (465)
+..-.+..|-.=..--....+++..--+..-. .+..+..+ ..+++|.+++|++..|.++
T Consensus 252 ~g~aG~A~sstAGnAvatPaavA~adPs~~~~-a~~ATaqvAaavivTaiL~Pilta~~~k 311 (314)
T TIGR00793 252 DGTAGIAASSSAGAAVATPVLIAEMVPAFKPV-APAATALVATSVIVTSLLVPIATVWWSK 311 (314)
T ss_pred CCchhhHHHHHHHHhhhhHHHHHHhChhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333321111101112222211111111 22333333 5667799999999988654
No 44
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.95 E-value=0.75 Score=52.32 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hCCChHHHHHHHHHHhhHHH
Q 012343 325 IRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK-L-FGYSMRTSFLVGVSLAQIGE 394 (465)
Q Consensus 325 i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~-~-~g~~~~~a~~vgl~L~~~Ge 394 (465)
+.++.+++-.+..|++++...+..+|..+..+.+.....-.+.+.+..+ + .|.++..++.+|..++|-.-
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDP 145 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDP 145 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcH
Confidence 6778888888999999999999988876554444443444444444443 4 49999999999999988663
No 45
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=93.87 E-value=0.93 Score=43.00 Aligned_cols=128 Identities=15% Similarity=0.187 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchh--hH---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 300 LGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLI--HV---HFLWNHVDILLASVILVIIVKTAVGTIVTKL 374 (465)
Q Consensus 300 lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i--~~---~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~ 374 (465)
++++++|+++......+ .+..+...+..+-+.-..+|+++ |. +.+.+...-.+.+.+..+++-.+++++..++
T Consensus 2 l~~li~Gi~lG~~~~~~--~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP--FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhccc--ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777553222 22235565544444445566655 32 2233223345666777889999999999999
Q ss_pred hCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH----HHHHHHHHHHHHhh
Q 012343 375 FGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT----ALSLVTTPLLFKLI 435 (465)
Q Consensus 375 ~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v----~lS~i~~Pll~r~~ 435 (465)
.+.+.+|++.+|.++.=-+--+..+.+. .+++.-++-..+= .++.+..|++.|+.
T Consensus 80 l~~~~~~~lav~sG~GwYSlsg~~i~~~------~~~~~G~iafl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 80 LGLSLKESLAVASGFGWYSLSGVLITQL------YGPELGTIAFLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred hcCCHHHHHHHHccCcHHHhHHHHHHhh------hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999887777655555542 1222222222111 34667789998854
No 46
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=93.58 E-value=0.41 Score=49.14 Aligned_cols=136 Identities=10% Similarity=0.027 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 012343 298 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY 377 (465)
Q Consensus 298 ~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~ 377 (465)
+.+.+++.|..+.+. .+++.+..++=.++.+|++-...|..+|.+.+.....-.+++-+..++......+..-|+++.
T Consensus 175 ~allplliG~~lgnl--~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~~ 252 (326)
T PRK05274 175 GAVLPLLVGFILGNL--DPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIGG 252 (326)
T ss_pred HHHHHHHHHHHHHhH--HHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheeec
Confidence 344788899999873 222334444444679999999999999999887643222222223334444444555577744
Q ss_pred ChH---HHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012343 378 SMR---TSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPN 437 (465)
Q Consensus 378 ~~~---~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~~~~ 437 (465)
... .+...+.+-+--|- +.+.+. .-...-..++.-..+..++++|.++.|++..+.++
T Consensus 253 ~~g~~g~a~~ttaG~aic~p-AAvaa~-~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k 313 (326)
T PRK05274 253 GNGVAGAAAGSTAGNAVATP-AAVAAA-DPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSK 313 (326)
T ss_pred CCCcchHHHHHHHHHHHHHH-HHHHhh-ccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 33444443333332 222221 11122233444444445666899999999887554
No 47
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=92.39 E-value=3.1 Score=42.22 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHHhcCC--cchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 296 LSLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK 373 (465)
Q Consensus 296 ls~~lGaFlaGl~is~~--~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~ 373 (465)
-+|.+=|.++|+++.-. +..+-+.+.++.+.+...|+=...+|+.++.......+......++...+.-++.++....
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~ 260 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISK 260 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888765 3456778888999999999999999999988776544444455555666666667777777
Q ss_pred HhCCChHHH--HHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 374 LFGYSMRTS--FLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKL 434 (465)
Q Consensus 374 ~~g~~~~~a--~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~ 434 (465)
..+.+.... ..+- .-.|.+....+++ .+.|.-.+...+.+..++++|.++-|++...
T Consensus 261 ~~~l~~~~~~~~vl~-aa~P~a~~~~i~A---~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 261 LIGLRGLELSVAILQ-AALPGGAVAAVLA---TEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HhCCChHHHHHHHHH-HcCChhhHHHHHH---HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777764332 2221 2335555555544 4455544555555567888888888887643
No 48
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=91.61 E-value=10 Score=34.48 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhCch--HHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHH---HHHHHH
Q 012343 281 VAFCLLSAWCSDKLGLS--LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH---VDILLA 355 (465)
Q Consensus 281 lal~~~~~~iae~lGls--~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~---~~~~l~ 355 (465)
+.++...+++.+.+|+. ..+|+++++.+++-....+ .+.=+.++.+-..+-=..+|.+++++.+.+. +...+.
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~--~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~ 81 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLE--ITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALL 81 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCcc--CCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 34445566677777775 7899999998887543111 1112233445555556799999998877653 333455
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHH
Q 012343 356 SVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSR 402 (465)
Q Consensus 356 l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~ 402 (465)
.++..+..-...+++..+..+.|..+++. +.+|-|--+......
T Consensus 82 ~~~~~l~~~~~~~~~l~~~~~~~~~ta~L---a~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 82 STVLLLALSALLAWLLARLTGVDPLTAFL---ATSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCchHHHHHHHHH
Confidence 55566667777888888999999888764 356777666555443
No 49
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=90.24 E-value=0.039 Score=57.08 Aligned_cols=109 Identities=16% Similarity=0.295 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCchHHHHHHHHHHHhcCCcch--hhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHH
Q 012343 285 LLSAWCSDKLGLSLELGSFMAGVMISTTDFA--KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVII 362 (465)
Q Consensus 285 ~~~~~iae~lGls~~lGaFlaGl~is~~~~~--~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl 362 (465)
+....+.+.++++..+|-.++|++++..... +.-.+..+.+.++..++.....|.++|++.+.+.+...+...+...+
T Consensus 9 ~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~ 88 (380)
T PF00999_consen 9 FVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFL 88 (380)
T ss_dssp ---------------------------------------S-SSHHHHS--SSHHHHTTGGGG------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceee
Confidence 3344468889999999999999999987543 11146677888999999988999999999998776554444333333
Q ss_pred HHHHH-HHHHHH---HhCCChHHHHHHHHHHhhHH
Q 012343 363 VKTAV-GTIVTK---LFGYSMRTSFLVGVSLAQIG 393 (465)
Q Consensus 363 ~K~v~-~~l~~~---~~g~~~~~a~~vgl~L~~~G 393 (465)
.-... ++.... ..|.+..++...|..+++-+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 89 LPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp -------------------------TTHHHHTT--
T ss_pred ehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 33333 333332 46889999999999887665
No 50
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=88.93 E-value=30 Score=35.43 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHhcCCcchh-hHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHH---HH
Q 012343 278 LAAVAFCLLSAWCSDKLGL--SLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH---VD 351 (465)
Q Consensus 278 l~~lal~~~~~~iae~lGl--s~~lGaFlaGl~is~~~~~~-~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~---~~ 351 (465)
...+..+...+++.+.+++ ...+|+++.+.+++.....+ ..- +.+.+....+-=.++|.+++...+.+. ..
T Consensus 158 ~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P---~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~ 234 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLP---PWLVNAAQVLIGASIGSRFTRETLRELRRLLP 234 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 4445566777888888877 56899999998887652211 111 223445555556789999998876653 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHH-HHHHHHHHHH
Q 012343 352 ILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGT-TALSLVTTPL 430 (465)
Q Consensus 352 ~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~-v~lS~i~~Pl 430 (465)
..+..++..+..-...+++..+..+.+..+++. +.+|-|.-+..+.....+. |...-+..-.+ .+.-.++.|+
T Consensus 235 ~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~---d~~~V~~~q~~Rl~~v~~~~p~ 308 (318)
T PF05145_consen 235 PALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGA---DVAFVAAHQVVRLLFVLLLAPF 308 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHHH
Confidence 334555566677778888888999999887765 3678887666665554443 33222222111 1223356688
Q ss_pred HHHhhhh
Q 012343 431 LFKLIPN 437 (465)
Q Consensus 431 l~r~~~~ 437 (465)
+.|+..+
T Consensus 309 ~~r~~~r 315 (318)
T PF05145_consen 309 IARWLRR 315 (318)
T ss_pred HHHHHHH
Confidence 8777543
No 51
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=88.89 E-value=5.7 Score=41.11 Aligned_cols=116 Identities=14% Similarity=0.204 Sum_probs=79.9
Q ss_pred CchHHHHHHHHHHHhcCCc-chhhHHHhhhcHHHHH----HHHHHHHhcch-hhHhhHhHHH-HHHHHHHHHHHHHHHHH
Q 012343 295 GLSLELGSFMAGVMISTTD-FAKHTLDQVEPIRNLF----AALFLSSIGML-IHVHFLWNHV-DILLASVILVIIVKTAV 367 (465)
Q Consensus 295 Gls~~lGaFlaGl~is~~~-~~~~l~~~ie~i~~~f----~piFF~~iGl~-i~~~~l~~~~-~~~l~l~~~~vl~K~v~ 367 (465)
++|+..-+.+.|+++...+ ..++++++......|+ .+..++-+|+. +|++.+.+.. +-.+++++..+++=.++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 6788888888888888764 4456666666665433 33334455766 7898888765 44566677778888899
Q ss_pred HHHHHHHhCCChHHHHH-HHHHHhhHHH-HHHHHHHHHHhCCCCc
Q 012343 368 GTIVTKLFGYSMRTSFL-VGVSLAQIGE-FAFVLLSRASNLHLVE 410 (465)
Q Consensus 368 ~~l~~~~~g~~~~~a~~-vgl~L~~~Ge-~slvla~~a~~~giis 410 (465)
+++..|+.|+-+-|+-+ .|+.++.+|. =.+.+.+-+.+.+++.
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 99999999976666654 5678888874 3344555555655554
No 52
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.88 E-value=4.7 Score=40.95 Aligned_cols=131 Identities=21% Similarity=0.313 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCcchhhHHHhhh-cHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHH
Q 012343 278 LAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVE-PIRNLFAALFLSSIGMLIHVHFLWNHVDILLAS 356 (465)
Q Consensus 278 l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~~~~~l~~~ie-~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l 356 (465)
..-+.+.|....++..+.+||..|-.+||++...-..+---.+.+. .+.++=..+...-+|+++....+...-.+.+--
T Consensus 12 v~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipg 91 (408)
T COG4651 12 VGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPG 91 (408)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcch
Confidence 4456677888899999999999999999999985421111112233 234555555666899999999876532111100
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHh-CCCCcH
Q 012343 357 VILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASN-LHLVEG 411 (465)
Q Consensus 357 ~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~-~giis~ 411 (465)
.+.-+..-..-.+...+..|++....+..|+.++.-+ -|...++.+ .+.++.
T Consensus 92 Al~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aS---TVvllraLqEr~lidt 144 (408)
T COG4651 92 ALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVAS---TVVLLRALEERQLIDT 144 (408)
T ss_pred HHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHH---HHHHHHHHHHhccccc
Confidence 0111111122233445566888878888888766654 345556654 344443
No 53
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=87.82 E-value=37 Score=35.27 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHhCc--hHHHHHHHHHHHhcCCc-chhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHH---
Q 012343 277 QLAAVAFCLLSAWCSDKLGL--SLELGSFMAGVMISTTD-FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHV--- 350 (465)
Q Consensus 277 ~l~~lal~~~~~~iae~lGl--s~~lGaFlaGl~is~~~-~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~--- 350 (465)
....+...+..+.+...++. ...+|+++.|..++-.. ...++-+-.. .+-.-+.=..+|.++|-+.+....
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~---~va~~~iG~~IG~~f~~~~l~~~~r~~ 266 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL---AVAQALIGALIGSRFDRSILREAKRLL 266 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH---HHHHHHHHHHHcccccHHHHHHhHhhc
Confidence 33444555556666666655 45899999999988653 2111112222 334444456899999988776432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHH-HHHHHHHHHHH
Q 012343 351 DILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL-GTTALSLVTTP 429 (465)
Q Consensus 351 ~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll-~~v~lS~i~~P 429 (465)
...++.++..++.-...+++..+..+.++.++.. +.+|-|.-++.....+.+ .|...-..+- .=..+-..+.|
T Consensus 267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~---ad~a~V~a~q~lRll~il~i~p 340 (352)
T COG3180 267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALG---ADPAFVMALQVLRLLFILLLGP 340 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHHHH
Confidence 2234444455566666777778888999887765 356777655555444433 2332222221 11122223448
Q ss_pred HHHHhhhh
Q 012343 430 LLFKLIPN 437 (465)
Q Consensus 430 ll~r~~~~ 437 (465)
.+.|+..+
T Consensus 341 ~l~r~l~~ 348 (352)
T COG3180 341 ALARFLSK 348 (352)
T ss_pred HHHHHHHH
Confidence 88887543
No 54
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=86.75 E-value=2.9 Score=43.71 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHhcchhhHhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH-HHhhHHHHHHHH
Q 012343 324 PIRNLFAALFLSSIGMLIHVHFLWNHVDIL---LASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGV-SLAQIGEFAFVL 399 (465)
Q Consensus 324 ~i~~~f~piFF~~iGl~i~~~~l~~~~~~~---l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl-~L~~~Ge~slvl 399 (465)
++.+.|+.+||+++|+.-+...+.+.+-.+ +..........-......++..|.++.-++..|- +|..-=.-+...
T Consensus 66 ~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~ 145 (404)
T COG0786 66 SLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAW 145 (404)
T ss_pred ccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHH
Confidence 578999999999999999999887654221 2223334455666666677778888777766632 222111345666
Q ss_pred HHHHHhCCCCcH
Q 012343 400 LSRASNLHLVEG 411 (465)
Q Consensus 400 a~~a~~~giis~ 411 (465)
+....+.|.-+.
T Consensus 146 ~~~f~~~G~~~A 157 (404)
T COG0786 146 GPTFEDLGAEGA 157 (404)
T ss_pred HHHHHhcCCcch
Confidence 677777777654
No 55
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=86.61 E-value=35 Score=36.39 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhhHHHH
Q 012343 327 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLF--GYSMRTSFLVGVSLAQIGEF 395 (465)
Q Consensus 327 ~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~--g~~~~~a~~vgl~L~~~Ge~ 395 (465)
.+++|+--..-|+++|...+.+++..+..+....++...++.....+.. +.|+..++..|..++|-.-+
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv 134 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPV 134 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCch
Confidence 7888888888999999999998887766666666666666665656555 77788888888888776643
No 56
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=86.28 E-value=45 Score=34.65 Aligned_cols=150 Identities=17% Similarity=0.207 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhCc--hHHHH-HHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhH---HHHH
Q 012343 279 AAVAFCLLSAWCSDKLGL--SLELG-SFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDI 352 (465)
Q Consensus 279 ~~lal~~~~~~iae~lGl--s~~lG-aFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~---~~~~ 352 (465)
..+.+.+..+++.+..|+ ...+| ..++|++..-....-..-+ .++.+-..+-=..+|.++.++.+.. +|..
T Consensus 13 i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P~---~l~~~~q~ilG~~ig~~~t~s~l~~l~~~w~~ 89 (352)
T COG3180 13 ILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLPR---GLFKAGQVILGIMIGASLTPSVLDTLKSNWPI 89 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCCh---HHHHHHHHHHHHHHhhhcCHHHHHHHHHcccH
Confidence 334455567777777766 45788 6666666654322211111 1222333444458899998887653 4666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 012343 353 LLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLF 432 (465)
Q Consensus 353 ~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~ 432 (465)
.+.+++..+..-.+.+++..|+.+.|..++.. +..|-|.-+.+. .|++.|--.+.+...=-.=+++-....|++.
T Consensus 90 ~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~---gs~PGgas~m~~--iA~d~gAd~~~VAl~Q~lRvl~Vvl~vplv~ 164 (352)
T COG3180 90 VLVVLLLTLLSSILLGWLLKRFSILPGNTAFL---GSSPGGASAMVS--IAQDYGADLRLVALMQYLRVLFVVLLAPLVS 164 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhhH---hcCCchHHHHHH--HHHHhCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888888988888788777665 345666544444 4455554323221111122233345678888
Q ss_pred Hhhh
Q 012343 433 KLIP 436 (465)
Q Consensus 433 r~~~ 436 (465)
++.+
T Consensus 165 ~~~~ 168 (352)
T COG3180 165 RLFV 168 (352)
T ss_pred HHhc
Confidence 8754
No 57
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=86.13 E-value=30 Score=38.30 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHHhcCCcchhhHHHhhh-cHHHHHHHHHHHHhcchhhHhhHhHH---HHHHHHHHHHHHHHHHHHHHH
Q 012343 295 GLSLELGSFMAGVMISTTDFAKHTLDQVE-PIRNLFAALFLSSIGMLIHVHFLWNH---VDILLASVILVIIVKTAVGTI 370 (465)
Q Consensus 295 Gls~~lGaFlaGl~is~~~~~~~l~~~ie-~i~~~f~piFF~~iGl~i~~~~l~~~---~~~~l~l~~~~vl~K~v~~~l 370 (465)
.+...-|++++|+++...... ++ .+.+++..+|-..+|++.-|+++... ..-..++.+..++.-.+.++.
T Consensus 34 ~LG~~~gvLfvgl~~G~~g~~------i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~ 107 (562)
T TIGR03802 34 QLGGVAGSLIVAVLIGQLGIQ------IDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAVSGLITVYA 107 (562)
T ss_pred ecchHHHHHHHHHHHHhcCCC------CChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 344456889999999976331 22 25689999999999999999987642 222233334444455667777
Q ss_pred HHHHhCCChHH
Q 012343 371 VTKLFGYSMRT 381 (465)
Q Consensus 371 ~~~~~g~~~~~ 381 (465)
..+.+|++.-.
T Consensus 108 ~~~~~g~~~~~ 118 (562)
T TIGR03802 108 LAKIFGLDKGT 118 (562)
T ss_pred HHHHhCCCHHH
Confidence 78888988544
No 58
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=85.75 E-value=34 Score=35.78 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=62.9
Q ss_pred CchHHHHHHHHHHHhcCC----cchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHH-HHHHHHHHHHHHHHHH
Q 012343 295 GLSLELGSFMAGVMISTT----DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDIL-LASVILVIIVKTAVGT 369 (465)
Q Consensus 295 Gls~~lGaFlaGl~is~~----~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~-l~l~~~~vl~K~v~~~ 369 (465)
.+....+|+++|+++++. +..+--.+.++.+.++.+-+|-+..=+.++++.+.+.+..+ +.+++-.++.=+...+
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999985 12221123466677788888877778889999988765433 3344444555556667
Q ss_pred HHHHHhCCChHHHHHHHHHHh
Q 012343 370 IVTKLFGYSMRTSFLVGVSLA 390 (465)
Q Consensus 370 l~~~~~g~~~~~a~~vgl~L~ 390 (465)
+..|..|.+ +|+...+.+..
T Consensus 326 v~fr~~gkd-ydaavm~~G~~ 345 (368)
T PF03616_consen 326 VTFRVMGKD-YDAAVMSAGFC 345 (368)
T ss_pred HhhhhhCCC-hhHHHHhhhhh
Confidence 777888888 56666555443
No 59
>PRK09903 putative transporter YfdV; Provisional
Probab=85.73 E-value=28 Score=35.26 Aligned_cols=134 Identities=10% Similarity=0.019 Sum_probs=81.2
Q ss_pred chHHHHHHHHHHHhcCC--cchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 296 LSLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK 373 (465)
Q Consensus 296 ls~~lGaFlaGl~is~~--~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~ 373 (465)
-+|.+=+.++|+++.-. +..+-+.+.++.+.+...|+=...+|+++.......... .....+...+.-++..+....
T Consensus 172 ~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i~~~~~~ 250 (314)
T PRK09903 172 KEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLALLLVGM 250 (314)
T ss_pred hchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 35777777778766644 556678888999999999999999999986654321121 122233344444555665566
Q ss_pred HhCCChHHH-HHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHHHHHHHHh
Q 012343 374 LFGYSMRTS-FLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLL-LLGTTALSLVTTPLLFKL 434 (465)
Q Consensus 374 ~~g~~~~~a-~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~-ll~~v~lS~i~~Pll~r~ 434 (465)
..+.+.... ..+=..-.|.+..+.+++. +.|. |++..+. +..++++|.++-|++...
T Consensus 251 ~~~l~~~~~~v~vl~aa~P~a~~~~i~A~---~y~~-~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 251 ACHLNSEHLQMMVLAGALPPAFSGIIIAS---RFNV-YTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HcCCCcHHHHHHHHHHcccHHHHHHHHHH---HHcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667653322 1111224455555655554 4454 4444444 446677788888888654
No 60
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=84.78 E-value=41 Score=32.83 Aligned_cols=111 Identities=23% Similarity=0.315 Sum_probs=78.0
Q ss_pred HHhhhcHH-HHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHH
Q 012343 319 LDQVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAF 397 (465)
Q Consensus 319 ~~~ie~i~-~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~sl 397 (465)
.+-++|-. .+..|+| =+.+.+.++|..++.-++.....-++.+++.++.+|.+.. .. .++.||+.-.-
T Consensus 65 ~~lLgPAtVAlAvPLY-------kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~--~Sl~PkSvTTp 133 (230)
T COG1346 65 NFLLGPATVALAVPLY-------KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LI--LSLLPKSVTTP 133 (230)
T ss_pred HHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HH--HHhcccccccH
Confidence 33444433 3555554 3455667788877777777778888888899999998833 33 34889998777
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhh
Q 012343 398 VLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI---PNVMN 440 (465)
Q Consensus 398 vla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~~---~~~~~ 440 (465)
+-...+.+.|=+.+-....++.+-++..+++|.+.|.. +|++|
T Consensus 134 iAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~~i~~~~Ar 179 (230)
T COG1346 134 IAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLLRIRHPVAR 179 (230)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHh
Confidence 77788888888877665566667777888888887765 44444
No 61
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=82.43 E-value=71 Score=33.83 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcchhhHhhHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-HHH-hhHHHHHHHH
Q 012343 325 IRNLFAALFLSSIGMLIHVHFLWNHVDIL---LASVILVIIVKTAVGTIVTKLFGYSMRTSFLVG-VSL-AQIGEFAFVL 399 (465)
Q Consensus 325 i~~~f~piFF~~iGl~i~~~~l~~~~~~~---l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vg-l~L-~~~Ge~slvl 399 (465)
+.++++.+||+++|+.-+...+.+....+ ..+.........+.+....+.+|.++.-....| .+| ...| -+...
T Consensus 65 l~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHG-TAaA~ 143 (398)
T TIGR00210 65 LRDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHG-TGAAW 143 (398)
T ss_pred HHHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCc-HHHHH
Confidence 55899999999999999998877543222 233334567788888888889999988777732 332 2233 45556
Q ss_pred HHHHHh-CCCCcHHHHHHHHH--HHHHHHHHHHHHHHhhhhhhhh
Q 012343 400 LSRASN-LHLVEGKMYLLLLG--TTALSLVTTPLLFKLIPNVMNL 441 (465)
Q Consensus 400 a~~a~~-~giis~~~~~~ll~--~v~lS~i~~Pll~r~~~~~~~~ 441 (465)
+..-.+ .|.-+.....+-.+ ..+...+++-.+.++.-+..++
T Consensus 144 g~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk~~l 188 (398)
T TIGR00210 144 SPVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIRNKL 188 (398)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 665534 57655543333322 2233556665555554333333
No 62
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=79.25 E-value=86 Score=32.78 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcchhhHhhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-HHHhhHHHHHHHHH
Q 012343 325 IRNLFAALFLSSIGMLIHVHFLWNHVDI---LLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVG-VSLAQIGEFAFVLL 400 (465)
Q Consensus 325 i~~~f~piFF~~iGl~i~~~~l~~~~~~---~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vg-l~L~~~Ge~slvla 400 (465)
+.+.++..||+.+|+..+...+.+.+.. ...+.........+.+....+.++.++.-.+..| .++..-=..+...+
T Consensus 65 l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g 144 (368)
T PF03616_consen 65 LQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFG 144 (368)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHH
Confidence 6688999999999999998877654322 2233333455677777777788888877666554 23322113566666
Q ss_pred HHHHhC-CCCcHHHHH
Q 012343 401 SRASNL-HLVEGKMYL 415 (465)
Q Consensus 401 ~~a~~~-giis~~~~~ 415 (465)
..-.+. |.-+.....
T Consensus 145 ~~fe~~~G~~~a~~vg 160 (368)
T PF03616_consen 145 PTFEELYGWEGATSVG 160 (368)
T ss_pred HHHHHhcChhhhHHHH
Confidence 666666 775544333
No 63
>PRK04972 putative transporter; Provisional
Probab=77.32 E-value=73 Score=35.27 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=54.1
Q ss_pred hCchHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhH---HHHHHHHHHHHHHHHHHHHHHH
Q 012343 294 LGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTI 370 (465)
Q Consensus 294 lGls~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~---~~~~~l~l~~~~vl~K~v~~~l 370 (465)
+.+...-|++++|+++...... .-+.+.++.+.+|...+|++.-+.++.. +..-..++.+.+++.-.+.++.
T Consensus 35 ~~LG~~~g~L~vgl~~g~~~~~-----~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 109 (558)
T PRK04972 35 IQLGNSIGVLVVSLLLGQQHFS-----INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALG 109 (558)
T ss_pred EecCcchHHHHHHHHHHhCCCC-----CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344566889999999876432 1223468999999999999999988753 2222233333444444555666
Q ss_pred HHHHhCCChHH
Q 012343 371 VTKLFGYSMRT 381 (465)
Q Consensus 371 ~~~~~g~~~~~ 381 (465)
..+++|++.-.
T Consensus 110 ~~~~~~~~~~~ 120 (558)
T PRK04972 110 LGKLFGWDIGL 120 (558)
T ss_pred HHHHhCCCHHH
Confidence 77888888543
No 64
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=77.24 E-value=58 Score=33.64 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHH-h
Q 012343 327 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRAS-N 405 (465)
Q Consensus 327 ~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~-~ 405 (465)
+++-|+-|.-+|..+|++.+..++...+ +-..+-++ ...++..+...|++.+|+-.+|..=+.=|--++.+++.-. +
T Consensus 69 ~l~P~LIF~GIGAmtDFgpllanP~~~l-lGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LAp~ 146 (360)
T PF03977_consen 69 GLFPPLIFMGIGAMTDFGPLLANPKTLL-LGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKLAPH 146 (360)
T ss_pred chhhHHHHHHHhHHHhhHHHHhCHHHHH-HHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhhhHH
Confidence 6889999999999999999988765422 22223333 3345555666799999999988865555655666655421 1
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012343 406 -LHLVEGKMYLLLLGTTALSLVTTPLLFKLIPN 437 (465)
Q Consensus 406 -~giis~~~~~~ll~~v~lS~i~~Pll~r~~~~ 437 (465)
.|-|.-.-|+-+ .+.=++.|.+.|+.-+
T Consensus 147 LlgpIaVaAYsYM----aLvPiiqPpimklLtt 175 (360)
T PF03977_consen 147 LLGPIAVAAYSYM----ALVPIIQPPIMKLLTT 175 (360)
T ss_pred HHHHHHHHHHHHH----HHHhhhhhHHHHHhcC
Confidence 122222333322 3334566777776533
No 65
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=76.93 E-value=21 Score=37.85 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=67.1
Q ss_pred CchHHHHHHHHHHHhcCC----cchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHH-HHHHHHHHHH
Q 012343 295 GLSLELGSFMAGVMISTT----DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVIL-VIIVKTAVGT 369 (465)
Q Consensus 295 Gls~~lGaFlaGl~is~~----~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~-~vl~K~v~~~ 369 (465)
.+....+|+++|+++++. +..+-..+.++.+.++.+-+|-+..=+.++++.+.+.+..++++++. .+..=....+
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~f 323 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAIF 323 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999985 22222344677778889999988888999999998876555444443 4444445566
Q ss_pred HHHHHhCCChHHHHHHHHHHh
Q 012343 370 IVTKLFGYSMRTSFLVGVSLA 390 (465)
Q Consensus 370 l~~~~~g~~~~~a~~vgl~L~ 390 (465)
++.|..|.+ +|+-.++.+..
T Consensus 324 v~fr~mg~~-ydaaV~~ag~~ 343 (398)
T TIGR00210 324 VTFRLMGKD-YDAAVLCAGHC 343 (398)
T ss_pred HhHHhccch-HHHHHHhcccc
Confidence 777888877 88877544433
No 66
>PRK10711 hypothetical protein; Provisional
Probab=73.69 E-value=73 Score=31.22 Aligned_cols=90 Identities=11% Similarity=0.125 Sum_probs=59.3
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 012343 342 HVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT 421 (465)
Q Consensus 342 ~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v 421 (465)
+.+.+.++|..++.-+....+.-+..++..++.+|.+.. +..+|.||+.-.=+-...+.+.|=+..-.-...+.+-
T Consensus 80 q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitG 155 (231)
T PRK10711 80 QLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVG 155 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 444555666666665666666777788888899898733 2345889997777777777777665443333334455
Q ss_pred HHHHHHHHHHHHhh
Q 012343 422 ALSLVTTPLLFKLI 435 (465)
Q Consensus 422 ~lS~i~~Pll~r~~ 435 (465)
++-.+++|.++|+.
T Consensus 156 i~Ga~~g~~llk~~ 169 (231)
T PRK10711 156 ILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHHHc
Confidence 56677888877664
No 67
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=69.38 E-value=1e+02 Score=31.42 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCc-chhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 299 ELGSFMAGVMISTTD-FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTKL 374 (465)
Q Consensus 299 ~lGaFlaGl~is~~~-~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~---~~~~~l~l~~~~vl~K~v~~~l~~~~ 374 (465)
.+|+.+++.+.+... ..- ..=.++++....+-=..+|.+++++.+.. .+...+...+..++.-.+..++..|.
T Consensus 2 llG~~ia~~~~~~~~~~~~---~~p~~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ 78 (318)
T PF05145_consen 2 LLGPMIAVIIAALFGPLPL---RVPRRLRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRI 78 (318)
T ss_pred chHHHHHHHHHHHhCCCcc---CCCHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777666442 221 11223345556666679999999987664 23344555666677778888888999
Q ss_pred hCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Q 012343 375 FGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHL 408 (465)
Q Consensus 375 ~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~gi 408 (465)
.++|..++++-+. |-|--+.+... .+.|-
T Consensus 79 ~~~d~~TA~~~~~---PGg~s~m~~la--~~~ga 107 (318)
T PF05145_consen 79 SGLDRATAFFASM---PGGLSEMVALA--EEYGA 107 (318)
T ss_pred cCCChhHHHHHcC---CccHHHHHHHH--HHcCC
Confidence 9999888887544 66655555443 55553
No 68
>COG0679 Predicted permeases [General function prediction only]
Probab=69.17 E-value=1.3e+02 Score=30.34 Aligned_cols=139 Identities=23% Similarity=0.229 Sum_probs=95.6
Q ss_pred hCchHHHHHHHHHHHhcCC--cchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHH-HHHHHHHHHHHHHHHHHHHHH
Q 012343 294 LGLSLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTI 370 (465)
Q Consensus 294 lGls~~lGaFlaGl~is~~--~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~-~~~~l~l~~~~vl~K~v~~~l 370 (465)
.=.+|.+=|.+.|+++... +..+.+.+.++.+.+...|+=.+.+|+.++....... ...+......-.+..++.++.
T Consensus 165 ~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~ 244 (311)
T COG0679 165 LLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALL 244 (311)
T ss_pred HHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 3357888888899988854 4556677888888999999999999999999544433 222333333357778888888
Q ss_pred HHHHhCCChHHH-HHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012343 371 VTKLFGYSMRTS-FLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 435 (465)
Q Consensus 371 ~~~~~g~~~~~a-~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~~ 435 (465)
..+..|.+.-+. ..+=....|.+..+.+++. +.+.-.+...+.+..++.++.+..|..+-+.
T Consensus 245 ~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~---~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 245 VAKLLGLSGLALQVLVLLSAMPTAVNAYVLAR---QYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHHHcCCChHHHHHHHHHhhCcHHhHHHHHHH---HhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889988875444 2222224566655555554 4666556666677788888888888876553
No 69
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=68.60 E-value=1.1e+02 Score=29.69 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=58.0
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 012343 342 HVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT 421 (465)
Q Consensus 342 ~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v 421 (465)
+.+.+.++|..++..+....+.-+..++..++.+|.+.. . ..++.+|+.-.-+-.....+.|-...-.-...+.+-
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~--~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitG 144 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--I--ILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITG 144 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345566667666666666667777788888888898743 2 345889997666666677777665443333334444
Q ss_pred HHHHHHHHHHHHhh
Q 012343 422 ALSLVTTPLLFKLI 435 (465)
Q Consensus 422 ~lS~i~~Pll~r~~ 435 (465)
++..+++|.+.|+.
T Consensus 145 i~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 145 ILGAVLGPPLLKLL 158 (215)
T ss_pred hHHHHhHHHHHhHc
Confidence 55667777776663
No 70
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=67.51 E-value=1.3e+02 Score=29.47 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=57.9
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 012343 342 HVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT 421 (465)
Q Consensus 342 ~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v 421 (465)
+.+.+.+++..++..+....+.-...+...++.+|.+.. .. .++.||+.-.-+-...+.+.|=...-.-...+.+-
T Consensus 79 ~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~--~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitG 154 (226)
T TIGR00659 79 QLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE--II--ASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTG 154 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 445566666655555556666677788888888898732 22 35889997766666777777664333333333444
Q ss_pred HHHHHHHHHHHHhh
Q 012343 422 ALSLVTTPLLFKLI 435 (465)
Q Consensus 422 ~lS~i~~Pll~r~~ 435 (465)
++-.+++|.+.|+.
T Consensus 155 i~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 155 LLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHHc
Confidence 56677777776664
No 71
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=67.13 E-value=92 Score=32.05 Aligned_cols=132 Identities=18% Similarity=0.158 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHhcCCc--ch----hhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhH--HHHHHHHHHHHHHHHHHHHH
Q 012343 297 SLELGSFMAGVMISTTD--FA----KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN--HVDILLASVILVIIVKTAVG 368 (465)
Q Consensus 297 s~~lGaFlaGl~is~~~--~~----~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~--~~~~~l~l~~~~vl~K~v~~ 368 (465)
+|.+=+.+.|++++-.+ .. +-+.+.++.+.+...|+=.+.+|..+....... .+......++...+.-++.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 323 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIG 323 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 66666777777777552 22 556678888889999999999999987654332 12222333556666667777
Q ss_pred HHHHHHhCCChHHH-HHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 012343 369 TIVTKLFGYSMRTS-FLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLL 431 (465)
Q Consensus 369 ~l~~~~~g~~~~~a-~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll 431 (465)
+...+..+.+.... +.+=..-.|-+....+++ .+.|.-+++.-..+..+++++.++.|+.
T Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a---~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 384 (385)
T PF03547_consen 324 IGIVFLLGLDGDMARVLILQAAMPTAINSFVIA---SLYGLDEEEASSIVFWSTLLSIPTLPLW 384 (385)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCCchHHHHHHH---HHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777654322 111112344444444444 4456655666666667777777777654
No 72
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=63.91 E-value=1.3e+02 Score=30.00 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCC-cchhhHHHhhhcHHHH-HHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 012343 299 ELGSFMAGVMISTT-DFAKHTLDQVEPIRNL-FAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFG 376 (465)
Q Consensus 299 ~lGaFlaGl~is~~-~~~~~l~~~ie~i~~~-f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g 376 (465)
.+-.+++|+.+++. |..++..+++.++..+ +.-+.+..++.+. ..+..+.+.+....++..+.-+..++...+.+|
T Consensus 143 v~vPl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~~~~~~g~~~a~~~~ 220 (286)
T TIGR00841 143 VLIPVSIGMLVKHKLPQIAKIILKVGLISVFLLSVIIAVVGGINV--ENLATIGPLLLLVGILLPLAGFLLGYLLAKLAG 220 (286)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhCchHHHHHHHHHHHHHHHhhH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566777777754 2222223334444432 2222233333332 334444333334444455666777788888888
Q ss_pred CChHHHHHHHHHHhhH-HHHHHHHHHHHH
Q 012343 377 YSMRTSFLVGVSLAQI-GEFAFVLLSRAS 404 (465)
Q Consensus 377 ~~~~~a~~vgl~L~~~-Ge~slvla~~a~ 404 (465)
.+.+++..++...+.| +..++.++....
T Consensus 221 l~~~~~~t~~~~~g~qN~~lal~la~~~f 249 (286)
T TIGR00841 221 LPWARCRTISIEVGMQNSQLCSTIAQLSF 249 (286)
T ss_pred CCHhhheeeeeeeecccHHHHHHHHHHhc
Confidence 8877776655554433 346666666443
No 73
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=63.85 E-value=86 Score=32.27 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCC-cchhhHHHhhhcHH-HHHHHHH-HHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 012343 300 LGSFMAGVMISTT-DFAKHTLDQVEPIR-NLFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFG 376 (465)
Q Consensus 300 lGaFlaGl~is~~-~~~~~l~~~ie~i~-~~f~piF-F~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g 376 (465)
+.....|...++. -..++-.+.+..+. ++++|.. |..++-..+...+.+.+.. .+..++..+.-++.+++..+.++
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFI-PVFAFIIFILGLLLGFLLSRLFR 88 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344556666654 24555567777775 7999988 6666665555555544333 22222333333555666667667
Q ss_pred CChHHHH--HHHHHHhhHHHHHHHHHHHHH
Q 012343 377 YSMRTSF--LVGVSLAQIGEFAFVLLSRAS 404 (465)
Q Consensus 377 ~~~~~a~--~vgl~L~~~Ge~slvla~~a~ 404 (465)
.+.+++. ..+.+...-|-+++-+...-.
T Consensus 89 ~~~~~~~~~~~~~~~~N~~~lglpi~~~l~ 118 (385)
T PF03547_consen 89 LPKEWRGVFVLAASFGNTGFLGLPILQALF 118 (385)
T ss_pred CCcccceEEEecccCCcchhhHHHHHHHHh
Confidence 6655543 334445666666666665433
No 74
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=62.09 E-value=1.6e+02 Score=28.81 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=62.7
Q ss_pred hHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 012343 342 HVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT 421 (465)
Q Consensus 342 ~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v 421 (465)
+.+.+.++|..++.-+++..+.-++.++..++.+|.+.. +-.++.||+.-.=+-..++.+.|=+..-.....+.+-
T Consensus 85 q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitG 160 (232)
T PRK04288 85 KRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNA 160 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 445566667666666667777778888888999998842 2345889997777777788887766554444444555
Q ss_pred HHHHHHHHHHHHhh
Q 012343 422 ALSLVTTPLLFKLI 435 (465)
Q Consensus 422 ~lS~i~~Pll~r~~ 435 (465)
++-.+++|.+.|+.
T Consensus 161 i~Gai~g~~llk~~ 174 (232)
T PRK04288 161 VIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHHc
Confidence 66778888887764
No 75
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=60.36 E-value=97 Score=31.91 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcchhhH----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHH
Q 012343 325 IRNLFAALFLSSIGMLIHV----HFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLL 400 (465)
Q Consensus 325 i~~~f~piFF~~iGl~i~~----~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla 400 (465)
+..++.......+|++=-. +.+......++..+++.++.-+.+-.+..++.+.+..|+..++.-....+.++++.+
T Consensus 25 i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a 104 (327)
T PF05982_consen 25 IYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAA 104 (327)
T ss_pred HHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHH
Confidence 3444444445666665322 222221222223333333433444444444579999999999998999999999998
Q ss_pred HHHHhCCCCcHHHHHHHHHHHH
Q 012343 401 SRASNLHLVEGKMYLLLLGTTA 422 (465)
Q Consensus 401 ~~a~~~giis~~~~~~ll~~v~ 422 (465)
..-.+..-++-|-|...+.+.+
T Consensus 105 ~~~L~~~gi~yeg~m~a~~alM 126 (327)
T PF05982_consen 105 LAFLESQGISYEGYMVALLALM 126 (327)
T ss_pred HHHHHHCCCCccccHHHHHHHH
Confidence 8777766667776766554443
No 76
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=59.26 E-value=47 Score=30.38 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=53.1
Q ss_pred CchHHHHHHHHHHHhcCCcch----hhHHH-hhhcHHHHHHHHHHHHhcchhhHhhHhH---HH--HHHHHHHHHHHHHH
Q 012343 295 GLSLELGSFMAGVMISTTDFA----KHTLD-QVEPIRNLFAALFLSSIGMLIHVHFLWN---HV--DILLASVILVIIVK 364 (465)
Q Consensus 295 Gls~~lGaFlaGl~is~~~~~----~~l~~-~ie~i~~~f~piFF~~iGl~i~~~~l~~---~~--~~~l~l~~~~vl~K 364 (465)
.+...-|++++|++++.-... .++-. ..+.++++.+.+|...+|++.-+.++.. +. .......+..++.-
T Consensus 20 ~LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~ 99 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPT 99 (154)
T ss_pred EecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 344456888999988875321 12222 2334679999999999999998887653 22 22222233333444
Q ss_pred HHHHHHHHHHhCCChH
Q 012343 365 TAVGTIVTKLFGYSMR 380 (465)
Q Consensus 365 ~v~~~l~~~~~g~~~~ 380 (465)
.+..++..+.+|+|.-
T Consensus 100 ~~~~~~~~~~~~~~~~ 115 (154)
T TIGR01625 100 LLVAVALIKLLRINYA 115 (154)
T ss_pred HHHHHHHHHHhCCCHH
Confidence 5556666678888854
No 77
>PRK03818 putative transporter; Validated
Probab=58.66 E-value=1.8e+02 Score=32.13 Aligned_cols=86 Identities=22% Similarity=0.363 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCc--chhhHHHhh-hcHHHHHHHHHHHHhcchhhHhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 300 LGSFMAGVMISTTD--FAKHTLDQV-EPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTK 373 (465)
Q Consensus 300 lGaFlaGl~is~~~--~~~~l~~~i-e~i~~~f~piFF~~iGl~i~~~~l~~---~~~~~l~l~~~~vl~K~v~~~l~~~ 373 (465)
-|++++|++++... ...++.+.. +.++++.+.+|...+|++.-++++.. +..-..++.+.+++.-.+.++...+
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~ 113 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHK 113 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888999888731 111122222 33679999999999999999988753 2222223333334444455666678
Q ss_pred HhCCChHHHHHHHH
Q 012343 374 LFGYSMRTSFLVGV 387 (465)
Q Consensus 374 ~~g~~~~~a~~vgl 387 (465)
.+|++.- ...|.
T Consensus 114 ~~~~~~~--~~~G~ 125 (552)
T PRK03818 114 LFGIPLP--VMLGI 125 (552)
T ss_pred HhCCCHH--HHHHH
Confidence 8898854 34444
No 78
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=57.27 E-value=2.6e+02 Score=29.48 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHHHH-Hh
Q 012343 327 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRA-SN 405 (465)
Q Consensus 327 ~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a-~~ 405 (465)
+++-|+-|.-+|..+|++.+..++...+..-..+-++-+. ++..+...|++.+|+-.+|..=+.=|--++.+++.- -+
T Consensus 105 gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~-t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLAp~ 183 (399)
T TIGR03136 105 SLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFA-TLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLILAKD 183 (399)
T ss_pred ccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHH-HHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHhhhhH
Confidence 5888999999999999999987765433322233343333 334555679999999998886555565566555532 11
Q ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012343 406 -LHLVEGKMYLLLLGTTALSLVTTPLLFKLIPN 437 (465)
Q Consensus 406 -~giis~~~~~~ll~~v~lS~i~~Pll~r~~~~ 437 (465)
.|-|.-.-|+-+ .+.=++.|.+.|+.-.
T Consensus 184 Llg~IaVAAYsYM----aLVPiiqPpimklLtt 212 (399)
T TIGR03136 184 LFVPISIIAYLYL----SLTYAGYPYLIKLLVP 212 (399)
T ss_pred hHHHHHHHHHHHH----HHHhcccchHHHhhcC
Confidence 122322333332 2333566777776543
No 79
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=57.11 E-value=1.4e+02 Score=31.72 Aligned_cols=117 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCCc-chhhHHHhhhcHHHHH----HHHHHHHhcch-hhHhhHhHHH
Q 012343 277 QLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-FAKHTLDQVEPIRNLF----AALFLSSIGML-IHVHFLWNHV 350 (465)
Q Consensus 277 ~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~~-~~~~l~~~ie~i~~~f----~piFF~~iGl~-i~~~~l~~~~ 350 (465)
.+....+-..-..+...+++|...-..+.=.++.-.+ ..+++++.......|+ .+...+-+|.. +|++.+.+..
T Consensus 252 llla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~ 331 (414)
T PF03390_consen 252 LLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAF 331 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHh
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHhhHH
Q 012343 351 DIL-LASVILVIIVKTAVGTIVTKLFGYSMRTS-FLVGVSLAQIG 393 (465)
Q Consensus 351 ~~~-l~l~~~~vl~K~v~~~l~~~~~g~~~~~a-~~vgl~L~~~G 393 (465)
..- ++.++..+++-.+++++..|..|+-+-|+ ...|+.++.+|
T Consensus 332 t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~G 376 (414)
T PF03390_consen 332 TPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMG 376 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCC
No 80
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=55.46 E-value=2.8e+02 Score=29.37 Aligned_cols=95 Identities=18% Similarity=0.318 Sum_probs=59.4
Q ss_pred hhhHHHhhhcHHHHH-----HHHHHHHhcch-hhHhhHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH-HH
Q 012343 315 AKHTLDQVEPIRNLF-----AALFLSSIGML-IHVHFLWNHVDI-LLASVILVIIVKTAVGTIVTKLFGYSMRTSFL-VG 386 (465)
Q Consensus 315 ~~~l~~~ie~i~~~f-----~piFF~~iGl~-i~~~~l~~~~~~-~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~-vg 386 (465)
.+++++--..+.+|| -|+ .+.+|.. +|+..+.+...+ -++..+.++++-..+++++.|..|+-+-|+.+ .|
T Consensus 310 p~~i~~GA~~l~~F~sk~~t~~L-m~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~ag 388 (438)
T COG3493 310 PKEIEEGAKQLSQFFSKNLTWPL-MAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAG 388 (438)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHH-HHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 344555444444433 343 3456666 677777665433 24555567788888999999999976666654 55
Q ss_pred HHHhhHHHH-HHHHHHHHHhCCCCc
Q 012343 387 VSLAQIGEF-AFVLLSRASNLHLVE 410 (465)
Q Consensus 387 l~L~~~Ge~-slvla~~a~~~giis 410 (465)
+.++.+|.- .+.+.+-+-+.++++
T Consensus 389 lC~a~~GGtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 389 LCMANMGGTGDVAVLSAADRMELMP 413 (438)
T ss_pred HHhcCCCCCCchHHhhhcchhcccc
Confidence 999999843 355555555556655
No 81
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=51.54 E-value=3.8e+02 Score=29.74 Aligned_cols=72 Identities=8% Similarity=0.158 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCChHHHHHHHHHHhhHHHHHH
Q 012343 327 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL---------FGYSMRTSFLVGVSLAQIGEFAF 397 (465)
Q Consensus 327 ~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~---------~g~~~~~a~~vgl~L~~~Ge~sl 397 (465)
.+++|.-....|.+++...+.+++.-++.+.+..++.-.+.+....+. .+.++.+++..|..+++..-++.
T Consensus 70 ~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAV 149 (559)
T TIGR00840 70 LYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAV 149 (559)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHH
Confidence 567888888999999999999876554444333333333222222221 25589999999999998886554
Q ss_pred H
Q 012343 398 V 398 (465)
Q Consensus 398 v 398 (465)
+
T Consensus 150 l 150 (559)
T TIGR00840 150 L 150 (559)
T ss_pred H
Confidence 4
No 82
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=48.74 E-value=3.5e+02 Score=29.01 Aligned_cols=22 Identities=18% Similarity=0.381 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcchhhHhhHh
Q 012343 326 RNLFAALFLSSIGMLIHVHFLW 347 (465)
Q Consensus 326 ~~~f~piFF~~iGl~i~~~~l~ 347 (465)
.|.++.+||..+|+.+.-+.+.
T Consensus 67 NDgLMaiFFf~vGLEiKrE~~~ 88 (423)
T PRK14853 67 ADGLLAIFFFVVGLELKREFVA 88 (423)
T ss_pred HHhhHHHHHHHHHHHHhHHHhc
Confidence 5899999999999999766543
No 83
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=48.41 E-value=2.6e+02 Score=27.91 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=54.9
Q ss_pred HHHHHHHhcchhhHhhHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH---HhhHHHHHHHHHHHH
Q 012343 330 AALFLSSIGMLIHVHFLWNHV---DILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVS---LAQIGEFAFVLLSRA 403 (465)
Q Consensus 330 ~piFF~~iGl~i~~~~l~~~~---~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~---L~~~Ge~slvla~~a 403 (465)
+.+-+...|+.+++..+.+.. ......++.-.+.-++.++...+.++.+.. ...|+. ..|-|..+.+.+..+
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~--~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPE--LAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHheeeCCCchHHHHHHHHh
Confidence 444456788888888775533 233444445566666667777777766533 233322 456666666655554
Q ss_pred HhCCCCcHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 012343 404 SNLHLVEGKMY-LLLLGTTALSLVTTPLLFKLI 435 (465)
Q Consensus 404 ~~~giis~~~~-~~ll~~v~lS~i~~Pll~r~~ 435 (465)
.. |.+.- ......++++.++.|+.....
T Consensus 92 ~g----n~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 92 KG----DMALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred CC----CHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22 12222 223355566777777765554
No 84
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=47.96 E-value=1.4e+02 Score=27.00 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCChH---HHHHHH--HHHHhCcCCccchHhHHH----------------------
Q 012343 108 DLRLISDLVVVIVSAAIGGIIFSCLGQPV---IVGYLL--AGSIIGPGGLKFISELVQ---------------------- 160 (465)
Q Consensus 108 d~~li~~l~iil~~a~i~g~l~~rl~lP~---ivG~Il--aGiiLGPsgL~~I~~~~q---------------------- 160 (465)
..+++.|+++++.+..+...+.+-+++|- ++|.++ ..+..+..-...+++..+
T Consensus 6 ~~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~~~~vk~~~v~~~a~~LL~~m~LfFVPagVGim~~~~ 85 (141)
T PRK04125 6 VYSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLLCTKVVKLEQVESLGTALTNNIGFLFVPSGISVINSLG 85 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhhHhHHHHhHH
Confidence 36888999999999888888888777653 555443 233333333334443222
Q ss_pred H---hcCchHHHHHHHHHHhhccHHHHHHHHhhc
Q 012343 161 L---CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQ 191 (465)
Q Consensus 161 l---~G~~~~~al~ig~~ls~TS~~vv~~iL~e~ 191 (465)
+ -+++...+++++.++....|+.+.+.+...
T Consensus 86 ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~r~ 119 (141)
T PRK04125 86 VMSQYPVQIIGVIIVATILLLACTGLFSQFILGK 119 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 123455677777777777788777776544
No 85
>PRK04972 putative transporter; Provisional
Probab=47.22 E-value=2.1e+02 Score=31.65 Aligned_cols=92 Identities=13% Similarity=0.224 Sum_probs=55.5
Q ss_pred hCchHHHHHHHHHHHhcCCcchhhHHHhh-----hcHHHHHHHHHHHHhcchhhHhhHhH---HHHHH-HHHHHHHHHHH
Q 012343 294 LGLSLELGSFMAGVMISTTDFAKHTLDQV-----EPIRNLFAALFLSSIGMLIHVHFLWN---HVDIL-LASVILVIIVK 364 (465)
Q Consensus 294 lGls~~lGaFlaGl~is~~~~~~~l~~~i-----e~i~~~f~piFF~~iGl~i~~~~l~~---~~~~~-l~l~~~~vl~K 364 (465)
+++...-|+.++|++++.-+......-++ ..++++-+.+|.+.+|++--+.++.. +.+.+ +.-.++.++.-
T Consensus 408 ~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~ 487 (558)
T PRK04972 408 FGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPV 487 (558)
T ss_pred eeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45556779999999999853222222222 23678999999999999998776543 22222 22233333333
Q ss_pred HHHHHHHHHHhCCChHHHHHHHH
Q 012343 365 TAVGTIVTKLFGYSMRTSFLVGV 387 (465)
Q Consensus 365 ~v~~~l~~~~~g~~~~~a~~vgl 387 (465)
.++.++..+.+|++.- ...|.
T Consensus 488 ~~~~~~~~~~~k~~~~--~~~G~ 508 (558)
T PRK04972 488 VICFLFGAYVLRMNRA--LLFGA 508 (558)
T ss_pred HHHHHHHHHHHcCCHH--HHHHH
Confidence 4444455577888855 34444
No 86
>PRK01658 holin-like protein; Validated
Probab=46.59 E-value=1.7e+02 Score=25.63 Aligned_cols=83 Identities=24% Similarity=0.320 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChH---HHHHHH--HHHHhCcCCccchHhHHH----------------------H
Q 012343 109 LRLISDLVVVIVSAAIGGIIFSCLGQPV---IVGYLL--AGSIIGPGGLKFISELVQ----------------------L 161 (465)
Q Consensus 109 ~~li~~l~iil~~a~i~g~l~~rl~lP~---ivG~Il--aGiiLGPsgL~~I~~~~q----------------------l 161 (465)
.+++.|+++++.+..+...+.+.+++|- ++|.++ .....|..-...+++..+ +
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L~~~~ik~~~v~~~a~~Ll~~m~llFVPa~VGi~~~~~l 83 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLLSFKILKLKWIELGAETLLAELPLFFIPSAVGVMNYGDF 83 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHhHHH
Confidence 4778899988888887777777677653 455443 333344444444443322 1
Q ss_pred ---hcCchHHHHHHHHHHhhccHHHHHHHHhhc
Q 012343 162 ---CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQ 191 (465)
Q Consensus 162 ---~G~~~~~al~ig~~ls~TS~~vv~~iL~e~ 191 (465)
-|++...+..++..+....|+.+.+.+.++
T Consensus 84 l~~~~~~il~~ivvsT~l~l~vtg~~~~~l~~~ 116 (122)
T PRK01658 84 LSSKGISLFLVVVISTFVVMIVTGYLTQLLAKR 116 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123445667777777777777777776654
No 87
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=45.73 E-value=1.4e+02 Score=31.53 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcchhhHhhHhH
Q 012343 326 RNLFAALFLSSIGMLIHVHFLWN 348 (465)
Q Consensus 326 ~~~f~piFF~~iGl~i~~~~l~~ 348 (465)
.|.++.+||..+|+.+.-+.+..
T Consensus 61 NDgLMaiFFf~vGLEiKrE~~~G 83 (383)
T PRK14854 61 NDGLMAIYFLYIGLEIKREIIVG 83 (383)
T ss_pred HhhHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999998776543
No 88
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=44.02 E-value=1.3e+02 Score=33.27 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=52.4
Q ss_pred chHHHHHHHHHHHhcCCcchh----hHHHh-hhcHHHHHHHHHHHHhcchhhHhhHhH---HHHHHHHHHHHHHHHHHHH
Q 012343 296 LSLELGSFMAGVMISTTDFAK----HTLDQ-VEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAV 367 (465)
Q Consensus 296 ls~~lGaFlaGl~is~~~~~~----~l~~~-ie~i~~~f~piFF~~iGl~i~~~~l~~---~~~~~l~l~~~~vl~K~v~ 367 (465)
+....|+.++|++++.-.... ++-+. ...++++.+.+|.+.+|++--+.++.. +.+...++-+++++.-.+.
T Consensus 415 lg~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~ 494 (562)
T TIGR03802 415 LGTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLII 494 (562)
T ss_pred ehhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456679999999998752211 12222 234678999999999999998887653 2222233323333334344
Q ss_pred HHHHH-HHhCCChH
Q 012343 368 GTIVT-KLFGYSMR 380 (465)
Q Consensus 368 ~~l~~-~~~g~~~~ 380 (465)
+++.. +.+|++.-
T Consensus 495 ~~~~~~~~~~~~~~ 508 (562)
T TIGR03802 495 TMLIGKYVLKYDPA 508 (562)
T ss_pred HHHHHHHHhCCCHH
Confidence 44555 67888754
No 89
>COG3329 Predicted permease [General function prediction only]
Probab=43.84 E-value=2.4e+02 Score=29.00 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHh----cchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 296 LSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSI----GMLIHVHFLWNHVDILLASVILVIIVKTAVGTIV 371 (465)
Q Consensus 296 ls~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~i----Gl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~ 371 (465)
.||.+.-|+.|++++.-+-.-++-+ ++...+.-.....+ |..+..+.+.........-+.+.++.-++..++.
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~---~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l 92 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPE---AIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLL 92 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCch---HHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888875421111111 12211111222334 4455556665544444444555566667777777
Q ss_pred HHHhCCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 012343 372 TKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL 418 (465)
Q Consensus 372 ~~~~g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll 418 (465)
.++.+.+..|+..++-.....+...+.-+..-++.-=+.-|-|...+
T Consensus 93 ~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~ 139 (372)
T COG3329 93 RKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAM 139 (372)
T ss_pred HHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 88889999999999988999998888888777665445666665543
No 90
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=42.86 E-value=4.2e+02 Score=27.81 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCcch--hhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012343 298 LELGSFMAGVMISTTDFA--KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLF 375 (465)
Q Consensus 298 ~~lGaFlaGl~is~~~~~--~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~ 375 (465)
+.+=+++.|++++|.+.- +...+.-+.+++.+.|+=-...=++.|.+.+.....-.+...++..++-.+++.++...+
T Consensus 27 ~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~l~ 106 (378)
T PF05684_consen 27 GAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFLLF 106 (378)
T ss_pred HHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555554321 112233445567777777667778899999988765555555556666666666655555
Q ss_pred CCC-hHHHHHHHHHHhh---HHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 012343 376 GYS-MRTSFLVGVSLAQ---IGEFAFVLLSRASNLHLVEGKMYLLLL 418 (465)
Q Consensus 376 g~~-~~~a~~vgl~L~~---~Ge~slvla~~a~~~giis~~~~~~ll 418 (465)
+.. ..|.|.+.-.++. -|..-++-...+++ .+++.+...+
T Consensus 107 ~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~---~~~~~~~a~~ 150 (378)
T PF05684_consen 107 GGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALG---VSDSLFAAAL 150 (378)
T ss_pred hhcccchHHHHHHHHHhcccCchhHHHHHHHHHC---CCHHHHHHHH
Confidence 433 2344443322221 23444544444443 2566665544
No 91
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=42.17 E-value=2.4e+02 Score=24.80 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 012343 417 LLGTTALSLVTTPLLFKLIPNVMNLGILLHW 447 (465)
Q Consensus 417 ll~~v~lS~i~~Pll~r~~~~~~~~~~~~~~ 447 (465)
.+.+.++-.+++|+-.-..-+.++.....+|
T Consensus 76 ~lli~~Fl~lTaPvaaH~iaRAA~~~~~~~~ 106 (120)
T PRK12671 76 EVLIGVFVVVTTPVTLMLLSRAALYRDRSED 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 3455566677778877666555444444444
No 92
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=40.14 E-value=1.6e+02 Score=31.51 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcchhhHhhHhH
Q 012343 326 RNLFAALFLSSIGMLIHVHFLWN 348 (465)
Q Consensus 326 ~~~f~piFF~~iGl~i~~~~l~~ 348 (465)
.|-++.+||..+|+.+.-+.+..
T Consensus 68 NDgLMaiFFf~VGLEIKrE~l~G 90 (423)
T PRK14855 68 NDGLMAVFFLLVGLEIKRELLIG 90 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 58999999999999998877643
No 93
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=37.73 E-value=4.6e+02 Score=28.52 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcchhhHhhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHH
Q 012343 327 NLFAALFLSSIGMLIHVHFLWNHV-DILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIG 393 (465)
Q Consensus 327 ~~f~piFF~~iGl~i~~~~l~~~~-~~~l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~G 393 (465)
++.+.+-..--|+..+.+..-... .-+...++.+++.-.+.+..+.+.++.+|.|++.+|...+..-
T Consensus 65 ~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTD 132 (574)
T COG3263 65 NLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTD 132 (574)
T ss_pred HHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhcccc
Confidence 444444455567888777665443 3334456667777777777888889999999999998766554
No 94
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=35.70 E-value=4.9e+02 Score=26.45 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHH
Q 012343 299 ELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 349 (465)
Q Consensus 299 ~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~ 349 (465)
.+.+.+.|...|........ -+.|........+-|...|++++.+.+.+.
T Consensus 7 l~~ai~la~~~P~~g~~~~~-~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~ 56 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGV-IKPEYVIKYGVALIFFISGLSLPTEELKAA 56 (313)
T ss_pred HHHHHHHHHHcCcccccCCc-cchhhhHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34556667777765321111 112344445566667778999999888753
No 95
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=34.49 E-value=3.3e+02 Score=28.25 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHHhhHHHHHHHHH
Q 012343 327 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY------SMRTSFLVGVSLAQIGEFAFVLL 400 (465)
Q Consensus 327 ~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~g~------~~~~a~~vgl~L~~~Ge~slvla 400 (465)
+++-|+-|.-+|..+|++.+..++... .+-..+-++-+ .+++.+...|+ +.+|+-.+|..=+.-|--++.++
T Consensus 63 ~l~P~LIFlGIGAmtDFgpllanP~~~-llGaaAQ~GiF-~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s 140 (354)
T TIGR01109 63 GIAPLLIFMGIGALTDFGPLLANPRTL-LLGAAAQFGIF-ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLS 140 (354)
T ss_pred chHHHHHHHhccHHhhhHHHHhChHHH-HHHHHHHhhHH-HHHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhH
Confidence 689999999999999999998776422 22222233322 23344445577 66888777764444444444444
Q ss_pred HH-HHh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012343 401 SR-ASN-LHLVEGKMYLLLLGTTALSLVTTPLLFKLIPN 437 (465)
Q Consensus 401 ~~-a~~-~giis~~~~~~ll~~v~lS~i~~Pll~r~~~~ 437 (465)
+. +-+ .|-|.-.-|+-+ .+.=++.|.+.|+.-+
T Consensus 141 ~~lap~Llg~IaVAAYsYM----aLvPiiqPpimklLtt 175 (354)
T TIGR01109 141 GKLAPELLAAIAVAAYSYM----ALVPIIQPPIMKALTS 175 (354)
T ss_pred hhhhhHHHHHHHHHHHHHH----HHHhcccchHHHhhcC
Confidence 43 111 122222223322 2333556777776533
No 96
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=34.43 E-value=3.8e+02 Score=26.95 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHh-cCC-cchhhHHHhhhcHH-HHHHHHHHHHhcchhhHhh-HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 298 LELGSFMAGVMI-STT-DFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHF-LWNHVDILLASVILVIIVKTAVGTIVTK 373 (465)
Q Consensus 298 ~~lGaFlaGl~i-s~~-~~~~~l~~~ie~i~-~~f~piFF~~iGl~i~~~~-l~~~~~~~l~l~~~~vl~K~v~~~l~~~ 373 (465)
+.+.....|... ++. ...++-.+.++.+. ++..|......-.+.+.+. ....+. ..........+-++.++...+
T Consensus 12 pv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 90 (321)
T TIGR00946 12 PILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSP-VVLFLWGAFSGSYALIWLITK 90 (321)
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777 454 35566677777775 8999998766666655531 111122 122222333344455555555
Q ss_pred -HhCCChHHH--HHHHHHHhhHHHHHHHHHHHHH
Q 012343 374 -LFGYSMRTS--FLVGVSLAQIGEFAFVLLSRAS 404 (465)
Q Consensus 374 -~~g~~~~~a--~~vgl~L~~~Ge~slvla~~a~ 404 (465)
..+.+.+++ ...+......|-+++-+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~ 124 (321)
T TIGR00946 91 PLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLF 124 (321)
T ss_pred HHHhcccchhhHHHHHhhhccceeehHHHHHHHh
Confidence 556554444 3344445555555554444433
No 97
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.19 E-value=2.9e+02 Score=23.33 Aligned_cols=77 Identities=17% Similarity=0.104 Sum_probs=41.5
Q ss_pred CCChHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCC
Q 012343 376 GYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSEGTPR 455 (465)
Q Consensus 376 g~~~~~a~~vgl~L~~~Ge~slvla~~a~~~giis~~~~~~ll~~v~lS~i~~Pll~r~~~~~~~~~~~~~~~~~~~~~~ 455 (465)
|....|++.=.. +.--|.++++++-...+. +..+|... .+.+++-++.---.|+||. .-.||.++..+++
T Consensus 20 gQkkaEr~~q~i-lti~aiVg~i~Gf~~Qql---s~tvy~vg-----~~~v~t~li~LPpwP~y~r-n~LkW~~Pa~ess 89 (101)
T KOG4112|consen 20 GQKKAERFQQLI-LTIGAIVGFIYGFAQQQL---SVTVYIVG-----AGFVFTLLITLPPWPWYRR-NPLKWAQPAIESS 89 (101)
T ss_pred chHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHhcCCCchhhhc-CcccccCCccccc
Confidence 444556665444 455567788877655544 23333332 2333333333334566666 6789998765555
Q ss_pred CCCCCCC
Q 012343 456 SEASSPG 462 (465)
Q Consensus 456 ~~~~~~~ 462 (465)
.+...||
T Consensus 90 sdd~d~g 96 (101)
T KOG4112|consen 90 SDDKDKG 96 (101)
T ss_pred cccCCcc
Confidence 5555444
No 98
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=33.71 E-value=2.3e+02 Score=30.52 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcchhhHhhHhH
Q 012343 326 RNLFAALFLSSIGMLIHVHFLWN 348 (465)
Q Consensus 326 ~~~f~piFF~~iGl~i~~~~l~~ 348 (465)
.|.++.+||..+|+.+.-+.+..
T Consensus 73 NDgLMaiFFf~VGLEIKrE~~~G 95 (438)
T PRK14856 73 DDVLMALFFLMIGLEIKRELLFG 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 48999999999999998876653
No 99
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=33.48 E-value=6.6e+02 Score=30.12 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCC
Q 012343 417 LLGTTALSLVTTPLLFKLIPNVMNLGILLHWFPSEG 452 (465)
Q Consensus 417 ll~~v~lS~i~~Pll~r~~~~~~~~~~~~~~~~~~~ 452 (465)
++..+++|.++.|.+..+.++. -.+..||+++|+
T Consensus 1004 L~~St~ltL~vvP~ly~~~~~~--~~~~~~~~~~~~ 1037 (1040)
T PRK10503 1004 LIVSQVLTLFTTPVIYLLFDRL--ALYTKSRFPRHE 1037 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhhhhhcCcccc
Confidence 4456677888889998886542 368899999997
No 100
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=32.89 E-value=3.5e+02 Score=25.85 Aligned_cols=29 Identities=17% Similarity=0.000 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 012343 419 GTTALSLVTTPLLFKLIPNVMNLGILLHW 447 (465)
Q Consensus 419 ~~v~lS~i~~Pll~r~~~~~~~~~~~~~~ 447 (465)
+++++-.+++|+..-..-+.++...+.-|
T Consensus 72 LiIvFllLTaPVaSHaIARAAyr~Gv~~w 100 (197)
T PRK12585 72 LAVLFIFLTTPVASHLINRAAYDTGVPLA 100 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 44455567778777666555554444455
No 101
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=31.36 E-value=2.8e+02 Score=29.34 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcchhhHhhHhH
Q 012343 326 RNLFAALFLSSIGMLIHVHFLWN 348 (465)
Q Consensus 326 ~~~f~piFF~~iGl~i~~~~l~~ 348 (465)
.|.++.+||..+|+.+.-+.+..
T Consensus 64 NDgLMaiFFf~vGLEiKrE~~~G 86 (388)
T PRK09561 64 NDGLMAVFFLLIGLEVKRELLEG 86 (388)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcC
Confidence 58999999999999998877643
No 102
>PRK10263 DNA translocase FtsK; Provisional
Probab=30.11 E-value=6.4e+02 Score=31.13 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=19.8
Q ss_pred hCchHHHHHHHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcch
Q 012343 294 LGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGML 340 (465)
Q Consensus 294 lGls~~lGaFlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~ 340 (465)
-+.-+.+|++++++++. +-.+..+++|+++++.+..
T Consensus 61 ~Nl~GiVGA~LAD~L~~-----------LFGl~AYLLP~LL~~~a~~ 96 (1355)
T PRK10263 61 HNLGGMPGAWLADTLFF-----------IFGVMAYTIPVIIVGGCWF 96 (1355)
T ss_pred ccccchHHHHHHHHHHH-----------HHhHHHHHHHHHHHHHHHH
Confidence 34556777777776653 1123345566555555443
No 103
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=28.04 E-value=3.2e+02 Score=28.95 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcchhhHhhHhH
Q 012343 326 RNLFAALFLSSIGMLIHVHFLWN 348 (465)
Q Consensus 326 ~~~f~piFF~~iGl~i~~~~l~~ 348 (465)
.|.++.+||..+|+.+.-+.+..
T Consensus 64 NDgLMaiFFf~vGLEiKrE~~~G 86 (389)
T PRK09560 64 NDGLMAVFFLLVGLEIKRELLEG 86 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999998876643
No 104
>TIGR02871 spore_ylbJ sporulation integral membrane protein YlbJ. Members of this protein family are found exclusively in Firmicutes (low-GC Gram-positive bacterial) and are known from studies in Bacillus subtilis to be part of the sigma-E regulon. Mutation leads to a sporulation defect, confirming that members of this protein family, YlbJ, are sporulation proteins. This protein appears to be universal among endospore-forming bacteria, but is encoded by a pair ORFs distant from eash other in Symbiobacterium thermophilum IAM14863.
Probab=27.62 E-value=6e+02 Score=26.63 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCChHHHHH-HHHHHHhC-cCCccchHhHHHHhcCchHHHHHHHHHHhhccHHHHHH
Q 012343 110 RLISDLVVVIVSAAIGGIIFSC-LGQPVIVGY-LLAGSIIG-PGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVK 186 (465)
Q Consensus 110 ~li~~l~iil~~a~i~g~l~~r-l~lP~ivG~-IlaGiiLG-PsgL~~I~~~~ql~G~~~~~al~ig~~ls~TS~~vv~~ 186 (465)
+++.+...+=..+.+++.+.++ +|+|.--++ +++|.+-| |.|-....|+.|-=-++..|+--+......+||.-+.-
T Consensus 49 ~lLi~~G~~~~~g~ll~pimrplf~lpg~~a~~li~g~l~GyP~Ga~~t~~ly~~g~it~~Ea~~Ll~f~nnssPlFiig 128 (362)
T TIGR02871 49 ELLINLGGVHFYGKLLEPILRPPFRVPGVGSFALVMGFLSGYPLGAKYSADLYEEKLITFEEAERLLNFANNSGPLFIIG 128 (362)
T ss_pred HHHHHcChHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHcCCchHHHHHHHHHHCCCCCHHHHHHHHHHHcCCChHHHHH
Confidence 3444444444445555555553 455544442 23333332 22222222222200123344444444444444444443
Q ss_pred HHhhcccCCcchHHHHHHHHHHHHHH
Q 012343 187 FLVEQNSNNALHGQVTIGTLILQDCA 212 (465)
Q Consensus 187 iL~e~~~l~s~~g~i~l~~avl~Dv~ 212 (465)
.+...-..+.+.|-+++.+-.+..+.
T Consensus 129 ~V~~~~l~~~~lg~~l~~~~yl~~l~ 154 (362)
T TIGR02871 129 AVGTSMLNNPTLGYILLISHYLSCIT 154 (362)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 33332233334444444444333333
No 105
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=27.61 E-value=6.7e+02 Score=25.51 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=29.5
Q ss_pred hhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhHH
Q 012343 316 KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 349 (465)
Q Consensus 316 ~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~~ 349 (465)
++..+.+.+++.++..+=|+.+|+++|++.+.+.
T Consensus 264 ~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~l~~~ 297 (305)
T PF03601_consen 264 AAVVSALKSLSKWLFALAMAAIGLSTNFKDLKQV 297 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHhc
Confidence 6677888888999999999999999999988653
No 106
>COG2431 Predicted membrane protein [Function unknown]
Probab=27.49 E-value=6.6e+02 Score=25.46 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhHHHHHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 012343 354 LASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLS-RASNLHLVEGKMYLLLLGTTALSLVTTPLLF 432 (465)
Q Consensus 354 l~l~~~~vl~K~v~~~l~~~~~g~~~~~a~~vgl~L~~~Ge~slvla~-~a~~~giis~~~~~~ll~~v~lS~i~~Pll~ 432 (465)
+.+-+..+++-.+++.+.+...+.|.++++.++.++.=-+-.+..++. .+-..|-+. |..=..==.++....|++.
T Consensus 166 l~l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~a~~pv~Gsia---fl~nl~RE~lai~liP~L~ 242 (297)
T COG2431 166 LILAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTEAYGPVLGSIA---FLNNLLRELLAIVLIPLLA 242 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhcccCcchhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 344445667778888888888999999999888877666655555554 111111110 0000111134556778888
Q ss_pred Hhh
Q 012343 433 KLI 435 (465)
Q Consensus 433 r~~ 435 (465)
|..
T Consensus 243 r~~ 245 (297)
T COG2431 243 RRF 245 (297)
T ss_pred HhC
Confidence 776
No 107
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=24.39 E-value=4.4e+02 Score=27.75 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcchhhHhhHhH
Q 012343 326 RNLFAALFLSSIGMLIHVHFLWN 348 (465)
Q Consensus 326 ~~~f~piFF~~iGl~i~~~~l~~ 348 (465)
.|.++.+||..+|+.+.-+.+..
T Consensus 57 NDgLMaiFFf~vGlEiKrE~~~G 79 (373)
T TIGR00773 57 NDGLMAVFFLLIGLEVKRELLEG 79 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999998876643
No 108
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=23.85 E-value=4.5e+02 Score=26.94 Aligned_cols=104 Identities=10% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCcch----hhHHHhhhcHHHHHHH---HHHHHhcchhhHhhHhHH---HHHHHHHHHHHHHHHHHH
Q 012343 298 LELGSFMAGVMISTTDFA----KHTLDQVEPIRNLFAA---LFLSSIGMLIHVHFLWNH---VDILLASVILVIIVKTAV 367 (465)
Q Consensus 298 ~~lGaFlaGl~is~~~~~----~~l~~~ie~i~~~f~p---iFF~~iGl~i~~~~l~~~---~~~~l~l~~~~vl~K~v~ 367 (465)
..+-..+.|..+++...+ +...++.++..+-+.. ++.+..-...+-+.+.++ ...+...+++....-+..
T Consensus 183 ~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~l 262 (328)
T TIGR00832 183 YLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFL 262 (328)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhHH-HHHHHHHH
Q 012343 368 GTIVTKLFGYSMRTSFLVGVSLAQIG-EFAFVLLS 401 (465)
Q Consensus 368 ~~l~~~~~g~~~~~a~~vgl~L~~~G-e~slvla~ 401 (465)
++...|..|.+.+++..+...-+.|- ..++.++.
T Consensus 263 g~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~ 297 (328)
T TIGR00832 263 TFALAKKLGLPYSITAPAAFTGASNNFELAIAVAI 297 (328)
T ss_pred HHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHH
No 109
>PRK09903 putative transporter YfdV; Provisional
Probab=23.75 E-value=6.4e+02 Score=25.29 Aligned_cols=83 Identities=8% Similarity=0.039 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCC-cchhhHHHhhhcHH-HHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 012343 299 ELGSFMAGVMISTT-DFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK-LF 375 (465)
Q Consensus 299 ~lGaFlaGl~is~~-~~~~~l~~~ie~i~-~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~-~~ 375 (465)
.+.-...|....+. ...++..+.++.+. ++..|......-.+.+.+.....+.. ........+.-++.+++..+ ..
T Consensus 12 if~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 90 (314)
T PRK09903 12 IIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRL-TLVSLVVIVGCFFFSWFGCYKFF 90 (314)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445567777665 35566677788775 89999886666667766555433322 22222222333334444443 44
Q ss_pred CCChHHH
Q 012343 376 GYSMRTS 382 (465)
Q Consensus 376 g~~~~~a 382 (465)
+.+.+++
T Consensus 91 ~~~~~~~ 97 (314)
T PRK09903 91 KRTHAEA 97 (314)
T ss_pred cCCcchh
Confidence 5554443
No 110
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=23.01 E-value=2e+02 Score=33.20 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=23.2
Q ss_pred HhhhcHHHHHHHHHHHHhcchhhHhhHhHHH
Q 012343 320 DQVEPIRNLFAALFLSSIGMLIHVHFLWNHV 350 (465)
Q Consensus 320 ~~ie~i~~~f~piFF~~iGl~i~~~~l~~~~ 350 (465)
..++.+.++-.-+|.+..|+.+|...+....
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~ 112 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTG 112 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccC
Confidence 3455556666778889999999999886543
No 111
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=22.58 E-value=1.2e+02 Score=27.58 Aligned_cols=32 Identities=34% Similarity=0.723 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHhC
Q 012343 117 VVIVSAAIGGIIFSCLGQP--VIVGYLLAGSIIG 148 (465)
Q Consensus 117 iil~~a~i~g~l~~rl~lP--~ivG~IlaGiiLG 148 (465)
+.+.++.++|++++++|+| .++|-++++.++.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~ 35 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLS 35 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 3456788899999999988 6777777666655
No 112
>PF13642 DUF4144: protein structure with unknown function; PDB: 2L6O_A.
Probab=22.38 E-value=43 Score=28.50 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=11.9
Q ss_pred CCcceeeeccCCeeeecCCCCCC
Q 012343 80 DDEMTLIDKKDNVFVMSNKKSKY 102 (465)
Q Consensus 80 ~~~~~lid~~~n~~~~~~p~~~~ 102 (465)
.+.++|||++++.|.+..+.+..
T Consensus 32 ~~~D~LIDs~G~~y~l~~~~~~~ 54 (101)
T PF13642_consen 32 SDDDRLIDSQGQSYQLKQSNSNK 54 (101)
T ss_dssp -TT--EEETT-EEEEE-T-----
T ss_pred CCCCEEEeCCCCEEEeccccccc
Confidence 55679999999999998855543
No 113
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=21.59 E-value=2.4e+02 Score=29.79 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHhhHHHHHHHHHH
Q 012343 327 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL-----FGYSMRTSFLVGVSLAQIGEFAFVLLS 401 (465)
Q Consensus 327 ~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~-----~g~~~~~a~~vgl~L~~~Ge~slvla~ 401 (465)
+++-|+-|.-+|..+|+..+..++... .+-..+-++-+.....+..+ .|++.+|+-.+|+.=+.-|--++.+++
T Consensus 134 gi~P~LIF~GIGAMtDFgpLlanP~~~-llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15477 134 GVAPLVIFMGVGAMTDFGPLLANPRTL-LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred chHHHHHHHhccHHhcchHHhhCHHHH-HHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 588889999999999999988776432 22222333333332222222 378999988887755555555555554
Q ss_pred HH-Hh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012343 402 RA-SN-LHLVEGKMYLLLLGTTALSLVTTPLLFKLIP 436 (465)
Q Consensus 402 ~a-~~-~giis~~~~~~ll~~v~lS~i~~Pll~r~~~ 436 (465)
.- -+ .|-|.-.-|+-+ .+.=++.|.+.|+.-
T Consensus 213 kLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLT 245 (433)
T PRK15477 213 KLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALT 245 (433)
T ss_pred hhhhHhHHHHHHHHHHHH----HHHhcccchHHHhcc
Confidence 32 11 133333333332 223345666666653
No 114
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=21.58 E-value=2.4e+02 Score=29.79 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHhhHHHHHHHHHH
Q 012343 327 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL-----FGYSMRTSFLVGVSLAQIGEFAFVLLS 401 (465)
Q Consensus 327 ~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~-----~g~~~~~a~~vgl~L~~~Ge~slvla~ 401 (465)
+++-|+-|.-+|..+|+..+..++... .+-..+-++-+.....+..+ .|++.+|+-.+|+.=+.-|--++.+++
T Consensus 134 gi~P~LIF~GIGAMtDFgpLlanP~~~-llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15476 134 GVAPLVIFMGVGAMTDFGPLLANPRTL-LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred chHHHHHHHhccHHhcchHHhhCHHHH-HHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 588899999999999999988776432 22222333333332222222 378999988887755555555555554
Q ss_pred HH-Hh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012343 402 RA-SN-LHLVEGKMYLLLLGTTALSLVTTPLLFKLIP 436 (465)
Q Consensus 402 ~a-~~-~giis~~~~~~ll~~v~lS~i~~Pll~r~~~ 436 (465)
.- -+ .|-|.-.-|+-+ .+.=++.|.+.|+.-
T Consensus 213 kLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLT 245 (433)
T PRK15476 213 KLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALT 245 (433)
T ss_pred hhhhHhHHHHHHHHHHHH----HHHhcccchHHHhcc
Confidence 32 11 133333333332 223345666666653
No 115
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=21.50 E-value=2.4e+02 Score=29.75 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHhhHHHHHHHHHH
Q 012343 327 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL-----FGYSMRTSFLVGVSLAQIGEFAFVLLS 401 (465)
Q Consensus 327 ~~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~-----~g~~~~~a~~vgl~L~~~Ge~slvla~ 401 (465)
+++-|+-|.-+|..+|+..+..++... .+-..+-++-+.....+..+ .|++.+|+-.+|+.=+.-|--++.+++
T Consensus 134 gi~P~LIF~GIGAMtDFgpLlanP~~~-llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15475 134 GVAPLVIFMGVGAMTDFGPLLANPRTL-LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred chHHHHHHHhccHHhcchHHhhCHHHH-HHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 588899999999999999988776432 22222333333332222222 378899988887755555555555554
Q ss_pred H-HHh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012343 402 R-ASN-LHLVEGKMYLLLLGTTALSLVTTPLLFKLIP 436 (465)
Q Consensus 402 ~-a~~-~giis~~~~~~ll~~v~lS~i~~Pll~r~~~ 436 (465)
. +-+ .|-|.-.-|+-+ .+.=++.|.+.|+.-
T Consensus 213 kLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLT 245 (433)
T PRK15475 213 KLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALT 245 (433)
T ss_pred hhhhHhHHHHHHHHHHHH----HHHhcccchHHHhcc
Confidence 3 211 133333333332 223345666666653
No 116
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=21.45 E-value=1.5e+02 Score=27.81 Aligned_cols=56 Identities=21% Similarity=0.157 Sum_probs=39.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCcCCccchHhHHHHhcCchHHHHHHHHHHhhccHHHHHHHHhhccc
Q 012343 125 GGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS 193 (465)
Q Consensus 125 ~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~~~ql~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~ 193 (465)
+|...+|+|+|+.+|+|-|=+.+.+--+. ++|+.+.+|+ |-|+....++-|.+.++
T Consensus 15 fae~m~r~G~nrtVG~iYgilyls~~Pmt-l~Ei~E~lg~------------Sks~vS~~lkkL~~~~l 70 (177)
T COG1510 15 FAETMSRWGINRTVGQIYGILYLSRKPLT-LDEIAEALGM------------SKSNVSMGLKKLQDWNL 70 (177)
T ss_pred HHHHHHHhCCcchHHHHhhhheecCCCcc-HHHHHHHHCC------------CcchHHHHHHHHHhcch
Confidence 67889999999999998777777554333 3466666666 44566667777777764
No 117
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=20.68 E-value=1.3e+02 Score=31.58 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=37.3
Q ss_pred cCCeeeecCCCCCCchhh--hcHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH-----HHHHHHHhCc
Q 012343 89 KDNVFVMSNKKSKYPVLQ--VDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVG-----YLLAGSIIGP 149 (465)
Q Consensus 89 ~~n~~~~~~p~~~~~~~~--~d~~li~~l~iil~~a~i~g~l~~rl~lP~ivG-----~IlaGiiLGP 149 (465)
+||.|.-+-|....|.+. .-.+....++.++.+-..++|+.||++.+..-+ .+.++.-+||
T Consensus 2 ~~~~~~~~~~~~~~p~~~~~~L~Qv~~aL~~VlalI~~~aWLlRR~~~~~~~~~~~~lkVv~s~sLG~ 69 (379)
T PRK12430 2 KNNLFFQSISNSLHPIFNDEKFLQIMSSLFEIILLILILSWILKKISLFKINKIISRMKIIERLSLGS 69 (379)
T ss_pred CCchhhhcCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCCCCceEEEEecccCC
Confidence 456665444444333333 124566666777777777889999999876532 4556666665
No 118
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=20.61 E-value=1.1e+03 Score=25.33 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=26.8
Q ss_pred ccHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHHH
Q 012343 179 SSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLL 216 (465)
Q Consensus 179 TS~~vv~~iL~e~~~l~s~~g~i~l~~avl~Dv~~~ll 216 (465)
.=||++....+..|..+.+.--.++++..+.|..+.++
T Consensus 115 ilTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 115 ILTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLL 152 (423)
T ss_pred hhHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccc
Confidence 34778888888877644433457788888999887654
Done!