Query 012343
Match_columns 465
No_of_seqs 179 out of 1380
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.7 4.8E-17 1.7E-21 166.8 13.0 247 162-436 115-384 (388)
2 3zux_A Transporter, ASBTNM; tr 87.3 12 0.00043 36.8 15.0 103 299-404 175-282 (332)
3 3zux_A Transporter, ASBTNM; tr 76.7 47 0.0016 32.6 14.4 121 303-435 28-155 (332)
4 2l0e_A Sodium/hydrogen exchang 72.7 0.6 2.1E-05 30.5 -0.4 29 165-193 2-30 (33)
5 1b9u_A Protein (ATP synthase); 16.5 2.1E+02 0.0071 17.9 4.2 23 243-265 11-33 (34)
6 2kv5_A FST, putative uncharact 14.9 1.4E+02 0.005 19.2 2.9 27 422-453 4-30 (33)
7 2k3c_A TMIX peptide; membrane 14.3 1.6 5.6E-05 28.4 -6.6 25 287-311 6-30 (33)
8 1zcd_A Na(+)/H(+) antiporter 1 13.8 1.6E+02 0.0055 29.6 4.6 21 326-346 64-84 (388)
9 2l6o_A Uncharacterized protein 8.2 1.6E+02 0.0056 24.4 1.9 20 80-99 46-65 (114)
10 1jb0_M Photosystem 1 reaction 7.1 3.1E+02 0.011 17.4 2.4 21 113-133 6-26 (31)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.70 E-value=4.8e-17 Score=166.82 Aligned_cols=247 Identities=17% Similarity=0.094 Sum_probs=177.5
Q ss_pred hcCchHHHHHHHHHHhhccHHHHHHHHhhcccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHH
Q 012343 162 CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNA-LHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLL 240 (465)
Q Consensus 162 ~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l~s-~~g~i~l~~avl~Dv~~~ll~al~~~l~~~~~~~~~~~sl~~~l 240 (465)
++....++.....+..+|+.+....++...+...+ ..++.+++.+++||+.++++++++. +++ . ....+.
T Consensus 115 ~~~~~~~~~~gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfy---t~~--~-~~~~l~--- 185 (388)
T 1zcd_A 115 FNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFY---TND--L-SMASLG--- 185 (388)
T ss_dssp GCCSSTTHHHHTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHS---CCC--C-CHHHHH---
T ss_pred HhcCChhhhhhhHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHH---cCC--c-cHHHHH---
Confidence 34444556777888899999999999999875544 4568999999999999999998763 111 1 112211
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhcCC-----cch
Q 012343 241 LVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-----DFA 315 (465)
Q Consensus 241 l~l~~f~lv~~vv~~~v~~~l~~~l~~~~~~~~e~~~l~~lal~~~~~~iae~lGls~~lGaFlaGl~is~~-----~~~ 315 (465)
. .++++++. +++++. ..++......+ ++...+.++..|+|+.+|+|++|+++|.. +..
T Consensus 186 ~-~~~~~~~~---------~~l~r~-----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~ 248 (388)
T 1zcd_A 186 V-AAVAIAVL---------AVLNLC-----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPA 248 (388)
T ss_dssp H-HHHHHHHH---------HHHHHT-----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHH
T ss_pred H-HHHHHHHH---------HHHHHh-----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHH
Confidence 1 11111111 111221 12222222222 33444566999999999999999999985 346
Q ss_pred hhHHHhhhcHH-HHHHHHH-HHHhcchhhHh---hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChH
Q 012343 316 KHTLDQVEPIR-NLFAALF-LSSIGMLIHVH---FLWNHVDILLASVILVIIVKTAVGTIVTKLF----------GYSMR 380 (465)
Q Consensus 316 ~~l~~~ie~i~-~~f~piF-F~~iGl~i~~~---~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~~----------g~~~~ 380 (465)
++++|+++|+. .+++|+| |++.|.++|.. .+.+ . ..+.+++..+++|+++++..++.. |.+++
T Consensus 249 ~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~-~-~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~ 326 (388)
T 1zcd_A 249 KRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTS-I-LPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQ 326 (388)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHH-H-SSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccC-h-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHH
Confidence 78999999998 4889999 99999999974 2322 1 123444556899999955555554 89999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012343 381 TSFLVGVSLAQIGEFAFVLLSRASNLHL--VEGKMYLLLLGTTALSLVTTPLLFKLIP 436 (465)
Q Consensus 381 ~a~~vgl~L~~~Ge~slvla~~a~~~gi--is~~~~~~ll~~v~lS~i~~Pll~r~~~ 436 (465)
+...+|+.++.+++.++++++.|.+.+. ..++.+..++..+++|.+++|++.|+..
T Consensus 327 ~~~~vg~L~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 327 QIMVVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp GGTTHHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHHHHHHHhccchHHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998876 3567799999999999999999877653
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=87.28 E-value=12 Score=36.82 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCC--cchhhHHHhhhcHHH--HHHHHHHHHhcchhhHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012343 299 ELGSFMAGVMISTT--DFAKHTLDQVEPIRN--LFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 374 (465)
Q Consensus 299 ~lGaFlaGl~is~~--~~~~~l~~~ie~i~~--~f~piFF~~iGl~i~~~~l~~~~~~~l~l~~~~vl~K~v~~~l~~~~ 374 (465)
.+-.+++|..+++. +..++..+.+.++.. +...++ ..+. -+.+.+.+....++...++....-+..++..+|.
T Consensus 175 vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~-~~~~--~~~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~r~ 251 (332)
T 3zux_A 175 VLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIG-AVVG--ASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKW 251 (332)
T ss_dssp THHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHH-HHHH--HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhH-HHHH--hhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888764 222333333333331 222222 1111 1233333333333333444556677778888899
Q ss_pred hCCChHHHHHHHHH-HhhHHHHHHHHHHHHH
Q 012343 375 FGYSMRTSFLVGVS-LAQIGEFAFVLLSRAS 404 (465)
Q Consensus 375 ~g~~~~~a~~vgl~-L~~~Ge~slvla~~a~ 404 (465)
+|.+.+++..+++. =.+.++.++.++....
T Consensus 252 ~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F 282 (332)
T 3zux_A 252 TGLPYDAQKALTIEVGMQNSGLAAALAAAHF 282 (332)
T ss_dssp TTCCHHHHHHHHHHHHCCCHHHHHHHHHHHS
T ss_pred hCCCHhHhhhhhhhhhhccHHHHHHHHHHHc
Confidence 99999998888773 3455678888877655
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=76.66 E-value=47 Score=32.62 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=69.2
Q ss_pred HHHHHHhcCCcchhhHHHhhhcHHHHHHHHHHHHhcchhhHhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q 012343 303 FMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTKLFGYSM 379 (465)
Q Consensus 303 FlaGl~is~~~~~~~l~~~ie~i~~~f~piFF~~iGl~i~~~~l~~---~~~~~l~l~~~~vl~K~v~~~l~~~~~g~~~ 379 (465)
.+.|...|+.. +.+++.....+.+-+...|+.++++.+.+ ++.......+.-.+..++.++...+.++.+.
T Consensus 28 ~~lg~~~P~~~------~~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~ 101 (332)
T 3zux_A 28 AAAAFFAPDTF------KWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPA 101 (332)
T ss_dssp HHHHHHCGGGT------GGGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHcchhh------hhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 35566666431 12445556677777889999999888764 3444444445556667777777777777664
Q ss_pred HHHHHHHH---HHhhHHHHHHHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 012343 380 RTSFLVGV---SLAQIGEFAFVLLSRASNLHLVEGKMYLL-LLGTTALSLVTTPLLFKLI 435 (465)
Q Consensus 380 ~~a~~vgl---~L~~~Ge~slvla~~a~~~giis~~~~~~-ll~~v~lS~i~~Pll~r~~ 435 (465)
. ...|+ +..|-|..+.++...+. | |.+.... ....++++.++.|++..+.
T Consensus 102 ~--~~~Glil~~~~P~~~~s~v~t~~a~--G--d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 102 E--IAVGVILVGCCPGGTASNVMTYLAR--G--NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp H--HHHHHHHHHHSCCCTHHHHHHHHTT--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHhcCCchhHHHHHHHHhC--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23332 24555566666554432 2 2222222 2244556667777765543
No 4
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=72.73 E-value=0.6 Score=30.54 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHhhccHHHHHHHHhhccc
Q 012343 165 KLSEGVFVGSFLSMSSTAVVVKFLVEQNS 193 (465)
Q Consensus 165 ~~~~al~ig~~ls~TS~~vv~~iL~e~~~ 193 (465)
++..++++|+++|+|++..+..++++.+.
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 35567889999999999999999999864
No 5
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=16.54 E-value=2.1e+02 Score=17.90 Aligned_cols=23 Identities=4% Similarity=0.037 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q 012343 243 LSIYLTVTSILSWSFVPRFLKLM 265 (465)
Q Consensus 243 l~~f~lv~~vv~~~v~~~l~~~l 265 (465)
.+.|+++.+++.|++.+++.+-+
T Consensus 11 ~i~Flil~~~l~kf~~~Pi~~~l 33 (34)
T 1b9u_A 11 AIAFVLFVLFCMKYVWPPLMAAI 33 (34)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777888888776543
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=14.91 E-value=1.4e+02 Score=19.20 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcccCCCCC
Q 012343 422 ALSLVTTPLLFKLIPNVMNLGILLHWFPSEGT 453 (465)
Q Consensus 422 ~lS~i~~Pll~r~~~~~~~~~~~~~~~~~~~~ 453 (465)
+++.+++|++.-.. +..+.||...+.+
T Consensus 4 i~~~IIaPivVGvv-----l~L~d~WLn~r~~ 30 (33)
T 2kv5_A 4 LMSLVIAPIFVGLV-----LEMISRVLDEEDD 30 (33)
T ss_dssp THHHHHHHHHHHHH-----HHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHccccc
Confidence 35677788776554 2347788866654
No 7
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=14.26 E-value=1.6 Score=28.40 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.2
Q ss_pred HHHHHHHhCchHHHHHHHHHHHhcC
Q 012343 287 SAWCSDKLGLSLELGSFMAGVMIST 311 (465)
Q Consensus 287 ~~~iae~lGls~~lGaFlaGl~is~ 311 (465)
.+.++|.+++|++++.+.+|+.+++
T Consensus 6 ~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 6 AYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp TTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHhCcChHHHHHHHHHHHhh
Confidence 4567899999999999999998775
No 8
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=13.79 E-value=1.6e+02 Score=29.64 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcchhhHhhH
Q 012343 326 RNLFAALFLSSIGMLIHVHFL 346 (465)
Q Consensus 326 ~~~f~piFF~~iGl~i~~~~l 346 (465)
.|-++.+||..+|++++.+.+
T Consensus 64 ndglm~lFff~vGLEik~e~l 84 (388)
T 1zcd_A 64 NDALMAVFFLLVGLEVKRELM 84 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHhhHHHh
Confidence 589999999999999998766
No 9
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=8.22 E-value=1.6e+02 Score=24.40 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.4
Q ss_pred CCcceeeeccCCeeeecCCC
Q 012343 80 DDEMTLIDKKDNVFVMSNKK 99 (465)
Q Consensus 80 ~~~~~lid~~~n~~~~~~p~ 99 (465)
.+-++|||++.+.|.+....
T Consensus 46 ~~~d~LIDs~G~~y~L~~~~ 65 (114)
T 2l6o_A 46 QYGDKLVDSNFHCFVLEEDA 65 (114)
T ss_dssp CTTCCEEETTCEEEEECTTS
T ss_pred CCCCEEEeCCCCEEEecCCC
Confidence 45569999999999987555
No 10
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=7.14 E-value=3.1e+02 Score=17.38 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 012343 113 SDLVVVIVSAAIGGIIFSCLG 133 (465)
Q Consensus 113 ~~l~iil~~a~i~g~l~~rl~ 133 (465)
.|+.+.++.+.+-|.++-|+|
T Consensus 6 ~Qi~iAL~~Al~~~iLA~rLg 26 (31)
T 1jb0_M 6 TQVYVALVIALLPAVLAFRLS 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777765
Done!