Query 012343
Match_columns 465
No_of_seqs 179 out of 1380
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 07:35:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012343.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012343hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 24.7 1.1E+02 0.0079 21.5 7.7 14 284-297 53-66 (86)
2 d2dloa2 g.39.1.3 (A:43-75) Thy 7.6 69 0.005 19.2 1.0 17 80-96 10-26 (33)
3 d1cola_ f.1.1.1 (A:) Colicin A 5.1 3.5E+02 0.025 22.4 4.7 32 115-146 144-179 (197)
4 d2z3qa1 a.26.1.2 (A:1-114) Int 3.0 3.6E+02 0.026 20.2 2.7 40 13-52 32-71 (114)
5 d1texa_ c.37.1.5 (A:) Stf0 sul 2.7 2E+02 0.015 22.4 0.9 17 87-103 1-17 (265)
6 d1ku9a_ a.4.5.36 (A:) DNA-bind 2.5 9.6E+02 0.07 17.1 6.2 58 124-194 14-71 (151)
7 d1yo5c1 a.4.5.21 (C:247-334) S 2.5 1.9E+02 0.014 20.9 0.4 20 42-61 39-59 (88)
8 d2a6qa1 d.306.1.1 (A:10-92) An 2.4 2E+02 0.014 20.3 0.4 20 1-20 1-20 (83)
9 d1ckva_ d.137.1.1 (A:) Soluble 2.1 4.3E+02 0.031 20.6 2.1 37 57-100 91-130 (141)
10 d1b48a1 a.45.1.1 (A:80-222) Cl 2.1 3.3E+02 0.024 19.9 1.4 33 429-461 100-132 (143)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=24.74 E-value=1.1e+02 Score=21.49 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhCch
Q 012343 284 CLLSAWCSDKLGLS 297 (465)
Q Consensus 284 ~~~~~~iae~lGls 297 (465)
+++....-+.+|.+
T Consensus 53 ~i~~~~~L~~~Gi~ 66 (86)
T d2vv5a3 53 AFTLIAALGRVGVQ 66 (86)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhCCC
Confidence 33444445667775
No 2
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.55 E-value=69 Score=19.18 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=14.8
Q ss_pred CCcceeeeccCCeeeec
Q 012343 80 DDEMTLIDKKDNVFVMS 96 (465)
Q Consensus 80 ~~~~~lid~~~n~~~~~ 96 (465)
++++.-+|..|+.|...
T Consensus 10 DGvPFtvD~~n~i~Cv~ 26 (33)
T d2dloa2 10 DGIPFTVDATSQIHCIE 26 (33)
T ss_dssp TTSCEECCTTCCCEEHH
T ss_pred CCCcEEEcCCCCEeehh
Confidence 78899999999999754
No 3
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=5.14 E-value=3.5e+02 Score=22.38 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhcCChH----HHHHHHHHHH
Q 012343 115 LVVVIVSAAIGGIIFSCLGQPV----IVGYLLAGSI 146 (465)
Q Consensus 115 l~iil~~a~i~g~l~~rl~lP~----ivG~IlaGii 146 (465)
.+.+.+.+..+|.++-.++.|. ++|+++.|++
T Consensus 144 ~va~~~fs~~~~~~~~~~g~~~~~iGI~g~li~~~v 179 (197)
T d1cola_ 144 SVALGIFSATLGAYALSLGVPAIAVGIAGILLAAVV 179 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 3444556667777788888873 5677666654
No 4
>d2z3qa1 a.26.1.2 (A:1-114) Interleukin-15 (IL-15) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.95 E-value=3.6e+02 Score=20.16 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=33.0
Q ss_pred chhhhHHHHHHhhhhhhhhhcccccchhhHHHHhhccccc
Q 012343 13 FPSYITLFLHCSLLCMSMLRHDYDFQAVLETVAKITHEKM 52 (465)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (465)
-|.-....+.|-.+-+.++++-.+.+..-++|...-..++
T Consensus 32 ~~~C~~~al~CF~~El~vl~~E~~~~~~~~~~~~~ii~~~ 71 (114)
T d2z3qa1 32 HPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILAN 71 (114)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 3566788999999999999998888999999887765443
No 5
>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium smegmatis [TaxId: 1772]}
Probab=2.67 E-value=2e+02 Score=22.39 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=14.7
Q ss_pred eccCCeeeecCCCCCCc
Q 012343 87 DKKDNVFVMSNKKSKYP 103 (465)
Q Consensus 87 d~~~n~~~~~~p~~~~~ 103 (465)
|+..+.|+++.||++|+
T Consensus 1 d~~~~~~I~g~pRSGTT 17 (265)
T d1texa_ 1 DHPTAYLVLASQRSGST 17 (265)
T ss_dssp CCCCEEEEEECTTSTHH
T ss_pred CCCCCEEEECCCCChHH
Confidence 67788999999999974
No 6
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.55 E-value=9.6e+02 Score=17.08 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=40.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCcCCccchHhHHHHhcCchHHHHHHHHHHhhccHHHHHHHHhhcccC
Q 012343 124 IGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSN 194 (465)
Q Consensus 124 i~g~l~~rl~lP~ivG~IlaGiiLGPsgL~~I~~~~ql~G~~~~~al~ig~~ls~TS~~vv~~iL~e~~~l 194 (465)
.++..++.+|+|..-|.+++=+...+..++ ..++.+.+|. +.++..-.++-|.+.|.+
T Consensus 14 ~~~~~~~~~Gl~~~~~~i~~~L~~~~~plt-~~ela~~l~v------------sk~~vs~~l~~L~~~GlV 71 (151)
T d1ku9a_ 14 LFSELAKIHGLNKSVGAVYAILYLSDKPLT-ISDIMEELKI------------SKGNVSMSLKKLEELGFV 71 (151)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHCSSCEE-HHHHHHHHTC------------CHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCCCCcC-HHHHHHHhCC------------CcchHHHHHHHHHHCCCE
Confidence 467889999999999998877777765433 4566666666 334445566777777754
No 7
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.48 E-value=1.9e+02 Score=20.92 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=13.4
Q ss_pred HHHHhhcc-cccccCcccccc
Q 012343 42 ETVAKITH-EKMKRNDTQEAN 61 (465)
Q Consensus 42 ~~~~~~~~-~~~~~~~~~~~~ 61 (465)
|.|||.=+ .|+|.+||=|+-
T Consensus 39 ~~VA~lWG~~Knk~~M~Yekl 59 (88)
T d1yo5c1 39 AQVARLWGIRKNRPAMNYDKL 59 (88)
T ss_dssp HHHHHHHHHHHTCTTCCHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHH
Confidence 77888854 445778876643
No 8
>d2a6qa1 d.306.1.1 (A:10-92) Antitoxin YefM {Escherichia coli [TaxId: 562]}
Probab=2.44 E-value=2e+02 Score=20.27 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.3
Q ss_pred CcchhhhhhcccchhhhHHH
Q 012343 1 MINLVISCFRSNFPSYITLF 20 (465)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (465)
|..+-++-+|.||++|+.+-
T Consensus 1 M~~is~seaR~~l~~~id~v 20 (83)
T d2a6qa1 1 MRTISYSEARQNLSATMMKA 20 (83)
T ss_dssp SEEEEHHHHHHTHHHHHHHH
T ss_pred CceECHHHHHHHHHHHHHHH
Confidence 44556788999999998864
No 9
>d1ckva_ d.137.1.1 (A:) Soluble methane monooxygenase regulatory protein B {Escherichia coli [TaxId: 562]}
Probab=2.12 E-value=4.3e+02 Score=20.61 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=23.6
Q ss_pred cccccCCCCcccccccccCCCCCCCcce---eeeccCCeeeecCCCC
Q 012343 57 TQEANGTRPFQFQDVFFSDQEDSDDEMT---LIDKKDNVFVMSNKKS 100 (465)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---lid~~~n~~~~~~p~~ 100 (465)
|-+....|+|..+++. .+++. -+|..+++|++++..-
T Consensus 91 tieE~LGR~~d~~ele-------VnlsT~~GRi~~~DD~fvitse~l 130 (141)
T d1ckva_ 91 EISELLGRQFNVYDFL-------VDVSSTIGRAYTLGNKFTITSELM 130 (141)
T ss_dssp HHHHHTTTTCCSTTTT-------SSSSEEESEEEECSSCEEEESCTT
T ss_pred HHHHHhCCCCcHHHhh-------hhhheeeeeeEEeCCeEEEEehhh
Confidence 3344455666665544 45554 4788899999987653
No 10
>d1b48a1 a.45.1.1 (A:80-222) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}
Probab=2.08 E-value=3.3e+02 Score=19.95 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhhcccCCCCCCCCCCCCC
Q 012343 429 PLLFKLIPNVMNLGILLHWFPSEGTPRSEASSP 461 (465)
Q Consensus 429 Pll~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (465)
|-+.++++++..+..+.+|...+...++.+..|
T Consensus 100 P~L~~~~~rv~~~P~ik~yl~~~~~~k~p~~~~ 132 (143)
T d1b48a1 100 PLLQAFKTRISNIPTIKKFLQPGSQRKPPPDGP 132 (143)
T ss_dssp HHHHHHHHHHHTSHHHHHHHSTTSSCCCCCCHH
T ss_pred HHHHHHHHHHHhCHHHHHHHcCCcccCCCCChH
Done!