Citrus Sinensis ID: 012344


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
MNKDISTSAENKTVNYQEGQLSNILAPAGPVAETIPAKRKENTESLAEGQAKDKHVVEAEKNSSAENSTILTKTKENGKKNLGEKNSKLEKESVDRRSSADSANLSSSERIKADENSTMLEQNQACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLRQYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESGDYSAGSAVKGTGVKLLDITALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFAQL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHccccccccccccEEcccccccccccHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccccccccccccEEccccccccccccccEEEEccccEEEEEEEccccccccccccccccccccEEEccccHHHHHccccccEEEEccccccccccEEEcccEEEEccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccHccccccHHHcccccHHHHHEcEcccccccccccHHHHHHHHcccEEEEEccccccHHHHHHHHHHHcccccccccccccEEEEEccccccccccEEEEEccccEEEEEEEccEEEEccccccccccccEEEEEccccHHHHHHHccccEEEEEccEEEccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHcHccccccccccccccccccccccccccccHHHHHHHHHc
mnkdistsaenktvnyqegqlsnilapagpvaetipakrkentESLAEGQAKDKHVVeaeknssaenstILTKTkengkknlgeknsklekesvdrrssadsanlssserikadenSTMLEQNQacnyakgkwvvddsrplysgahCKQWLSQMWACRLMQRTDFAYERlrwqpkdcqmeefegsqfLTRMQDRTLAFIGDSLGRQQFQSLMCMVtggkerpdvedvgkeyglvkprgairpngwayrfpstnTTILYYWSAclcdldplnitnpateyamhldrppaFLRQYLHKFDVLVLntghhwnrgklkanrwvmhvggmpntnrKIADIAGAKNFTIHSIVSWVnsqlpehprlkafyrsisprhfvngdwntggscdnttpmsigkevlqdesgdysagsavkgtgvKLLDITALsqvrdeghisqYSITASRgvqdclhwclpgvpdtwNEILFAQL
mnkdistsaenktvnyqegqlsnilapagpVAETIPAKRKENTEslaegqakdkhvveaeknssaenstiltktkengkknlgeknsklekesvdrrssadsanlssserikadenstMLEQNQACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTggkerpdvedvgkeyglvkprgairpngwayrFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLRQYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESGDYSAGSAVKGTGVKLLDITALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFAQL
MNKDISTSAENKTVNYQEGQLSNILAPAGPVAETIPAKRKENTESLAEGQAKDKHVVEAEKNSSAENSTIltktkengkknlgeknsklekesVdrrssadsanlsssERIKADENSTMLEQNQACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLRQYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESGDYSAGSAVKGTGVKLLDITALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFAQL
****************************************************************************************************************************ACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLRQYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGGSCD***********************AVKGTGVKLLDITALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFA**
*****************************************************************************************************************************CNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLRQYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESGDYSAGSAVKGTGVKLLDITALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFAQL
**********NKTVNYQEGQLSNILAPAGPVAETIPA*****************************NSTILTKTKENGKKNLGEKN***********************RIKADENSTMLEQNQACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLRQYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESGDYSAGSAVKGTGVKLLDITALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFAQL
****************************************************************************************************************************ACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLRQYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESGDYSAGSAVKGTGVKLLDITALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFAQL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
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MNKDISTSAENKTVNYQEGQLSNILAPAGPVAETIPAKRKENTESLAEGQAKDKHVVEAEKNSSAENSTILTKTKENGKKNLGEKNSKLEKESVDRRSSADSANLSSSERIKADENSTMLEQNQACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLRQYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESGDYSAGSAVKGTGVKLLDITALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFAQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
255550409490 conserved hypothetical protein [Ricinus 0.866 0.822 0.763 0.0
224068484392 predicted protein [Populus trichocarpa] 0.733 0.869 0.835 1e-179
15810385551 unknown protein [Arabidopsis thaliana] 0.808 0.682 0.747 1e-179
18420285551 protein trichome birefringence-like 16 [ 0.808 0.682 0.747 1e-179
145334527533 protein trichome birefringence-like 16 [ 0.808 0.705 0.747 1e-179
356564747 625 PREDICTED: uncharacterized protein LOC10 0.898 0.668 0.695 1e-178
356545780 680 PREDICTED: uncharacterized protein LOC10 0.892 0.610 0.687 1e-178
297808139555 hypothetical protein ARALYDRAFT_910111 [ 0.825 0.691 0.731 1e-177
225444688519 PREDICTED: uncharacterized protein LOC10 0.969 0.868 0.659 1e-175
357479407512 hypothetical protein MTR_4g125060 [Medic 0.905 0.822 0.682 1e-175
>gi|255550409|ref|XP_002516255.1| conserved hypothetical protein [Ricinus communis] gi|223544741|gb|EEF46257.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/406 (76%), Positives = 357/406 (87%), Gaps = 3/406 (0%)

Query: 60  EKNSSAENSTILTKTKENGKKNLGEKNSKLEKESVDRRSSADSANLSSSERIKADENSTM 119
           ++N  AE+ST+   T+E   +N+GEK+ KL+ + +D  +   SAN SS    + ++N TM
Sbjct: 79  KENGDAESSTL---TEEMNNQNIGEKDLKLKDQLLDLAAPIGSANSSSLLGEQDEKNFTM 135

Query: 120 LEQNQACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQM 179
              NQACNY KGKWVVDD++PLYSG  CKQWL+QMWACRLMQRTDF+YE LRWQP +CQM
Sbjct: 136 FMNNQACNYTKGKWVVDDNQPLYSGFGCKQWLAQMWACRLMQRTDFSYEMLRWQPNNCQM 195

Query: 180 EEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGA 239
           E F+GS+FL RM+ +TLAF+GDSLGRQQFQSLMCM+TGGKE PDV DVG+EYGLV+PRG+
Sbjct: 196 EAFKGSEFLKRMEGKTLAFVGDSLGRQQFQSLMCMITGGKETPDVLDVGREYGLVQPRGS 255

Query: 240 IRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLRQYLHKFDV 299
           +RPNGWAYRFPSTNT++LYYWSACLCDL+P++I NPAT+YAMHLDRPP+FLR +LHK DV
Sbjct: 256 VRPNGWAYRFPSTNTSVLYYWSACLCDLEPIDIKNPATDYAMHLDRPPSFLRHFLHKIDV 315

Query: 300 LVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPR 359
           LVLNTGHHWNRGKLKANRWVMHVGGMPNTN+K+A I  AKNFTIHSIV WVN QLP++P 
Sbjct: 316 LVLNTGHHWNRGKLKANRWVMHVGGMPNTNKKLAMIGDAKNFTIHSIVDWVNKQLPKYPH 375

Query: 360 LKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESGDYSAGSAVKGTGVKLLDI 419
           LKAFYRSISPRHFVNGDWNTGGSCDNTTPMS+GKEVLQDES DYSAG AVKGTGVKLLDI
Sbjct: 376 LKAFYRSISPRHFVNGDWNTGGSCDNTTPMSVGKEVLQDESSDYSAGRAVKGTGVKLLDI 435

Query: 420 TALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFAQL 465
           TALSQ+RDEGHIS++SITAS GVQDCLHWCLPGVPDTWNEILFA +
Sbjct: 436 TALSQLRDEGHISRFSITASSGVQDCLHWCLPGVPDTWNEILFALI 481




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068484|ref|XP_002326131.1| predicted protein [Populus trichocarpa] gi|222833324|gb|EEE71801.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15810385|gb|AAL07080.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18420285|ref|NP_568398.1| protein trichome birefringence-like 16 [Arabidopsis thaliana] gi|238481331|ref|NP_001154728.1| protein trichome birefringence-like 16 [Arabidopsis thaliana] gi|332005492|gb|AED92875.1| protein trichome birefringence-like 16 [Arabidopsis thaliana] gi|332005494|gb|AED92877.1| protein trichome birefringence-like 16 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145334527|ref|NP_001078609.1| protein trichome birefringence-like 16 [Arabidopsis thaliana] gi|332005493|gb|AED92876.1| protein trichome birefringence-like 16 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356564747|ref|XP_003550610.1| PREDICTED: uncharacterized protein LOC100796855 [Glycine max] Back     alignment and taxonomy information
>gi|356545780|ref|XP_003541313.1| PREDICTED: uncharacterized protein LOC100788136 [Glycine max] Back     alignment and taxonomy information
>gi|297808139|ref|XP_002871953.1| hypothetical protein ARALYDRAFT_910111 [Arabidopsis lyrata subsp. lyrata] gi|297317790|gb|EFH48212.1| hypothetical protein ARALYDRAFT_910111 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225444688|ref|XP_002277730.1| PREDICTED: uncharacterized protein LOC100247308 [Vitis vinifera] gi|297738542|emb|CBI27787.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357479407|ref|XP_003609989.1| hypothetical protein MTR_4g125060 [Medicago truncatula] gi|355511044|gb|AES92186.1| hypothetical protein MTR_4g125060 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
TAIR|locus:2180399551 TBL16 "AT5G20680" [Arabidopsis 0.761 0.642 0.785 3.9e-163
TAIR|locus:2160796408 TBL14 "AT5G64020" [Arabidopsis 0.763 0.870 0.607 3.2e-129
TAIR|locus:2040696482 TBL15 "AT2G37720" [Arabidopsis 0.713 0.688 0.582 1.4e-110
TAIR|locus:2080389469 TBL10 "TRICHOME BIREFRINGENCE- 0.711 0.705 0.326 1.2e-47
TAIR|locus:2080767427 TBL8 "AT3G11570" [Arabidopsis 0.711 0.775 0.328 3.9e-44
TAIR|locus:2182157464 TBL11 "TRICHOME BIREFRINGENCE- 0.711 0.713 0.301 6.6e-42
TAIR|locus:2096094475 TBL6 "AT3G62390" [Arabidopsis 0.707 0.692 0.303 2.2e-41
TAIR|locus:2088659556 TBL1 "AT3G12060" [Arabidopsis 0.722 0.604 0.310 1.2e-40
TAIR|locus:2036631541 TBL2 "AT1G60790" [Arabidopsis 0.705 0.606 0.284 1.2e-39
TAIR|locus:2170184608 TBR [Arabidopsis thaliana (tax 0.716 0.547 0.308 2.6e-39
TAIR|locus:2180399 TBL16 "AT5G20680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1588 (564.1 bits), Expect = 3.9e-163, P = 3.9e-163
 Identities = 278/354 (78%), Positives = 314/354 (88%)

Query:   112 KADENSTMLEQNQACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLR 171
             + D  ST    NQACNYAKGKWVVD+ RPLYSG+ CKQWL+ MWACRLMQRTDFA+E LR
Sbjct:   198 RTDGTSTARITNQACNYAKGKWVVDNHRPLYSGSQCKQWLASMWACRLMQRTDFAFESLR 257

Query:   172 WQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEY 231
             WQPKDC MEEFEGS+FL RM+++TLAF+GDSLGRQQFQS+MCM++GGKER DV DVG E+
Sbjct:   258 WQPKDCSMEEFEGSKFLRRMKNKTLAFVGDSLGRQQFQSMMCMISGGKERLDVLDVGPEF 317

Query:   232 GLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLR 291
             G + P G  RP GWAYRFP TNTT+LY+WS+ LCD++PLNIT+PATE+AMHLDRPPAFLR
Sbjct:   318 GFITPEGGARPGGWAYRFPETNTTVLYHWSSTLCDIEPLNITDPATEHAMHLDRPPAFLR 377

Query:   292 QYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVN 351
             QYL K DVLV+NTGHHWNRGKL  N+WVMHV G+PNTNRK+A +  AKNFTIHS VSWVN
Sbjct:   378 QYLQKIDVLVMNTGHHWNRGKLNGNKWVMHVNGVPNTNRKLAALGNAKNFTIHSTVSWVN 437

Query:   352 SQLPEHPRLKAFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESGDYSAGSAVKG 411
             SQLP HP LKAFYRS+SPRHFV G+WNTGGSC+NTTPMSIGKEVLQ+ES DYSAG AVKG
Sbjct:   438 SQLPLHPGLKAFYRSLSPRHFVGGEWNTGGSCNNTTPMSIGKEVLQEESSDYSAGRAVKG 497

Query:   412 TGVKLLDITALSQVRDEGHISQYSITASRGVQDCLHWCLPGVPDTWNEILFAQL 465
             TGVKLLDITALS +RDEGHIS++SI+ASRGVQDCLHWCLPGVPDTWNEILFA +
Sbjct:   498 TGVKLLDITALSHIRDEGHISRFSISASRGVQDCLHWCLPGVPDTWNEILFAMI 551




GO:0008150 "biological_process" evidence=ND
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2160796 TBL14 "AT5G64020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040696 TBL15 "AT2G37720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080389 TBL10 "TRICHOME BIREFRINGENCE-LIKE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080767 TBL8 "AT3G11570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182157 TBL11 "TRICHOME BIREFRINGENCE-LIKE 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096094 TBL6 "AT3G62390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036631 TBL2 "AT1G60790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170184 TBR [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.28.115.1
hypothetical protein (340 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 6e-74
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 8e-50
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 2e-20
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score =  233 bits (596), Expect = 6e-74
 Identities = 98/289 (33%), Positives = 138/289 (47%), Gaps = 27/289 (9%)

Query: 182 FEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGAIR 241
           F+  QFL R++ + + F+GDSL R Q++SL+C+++  +  P  + + ++  L        
Sbjct: 4   FDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEP-PKGKTLERDGRL-------- 54

Query: 242 PNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMHLDRPPAFLRQYLHKFDVLV 301
              + +RF   N TI +YWS  L + D         +  + LD       +     DVLV
Sbjct: 55  ---FRFRFKDYNVTIEFYWSPFLVESD----NAEEGKRVLKLDSIDEKWSKLWPGADVLV 107

Query: 302 LNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLK 361
            N+GH W   K+    W          N K      A    + +   WV+  LP   + +
Sbjct: 108 FNSGHWWLHRKVY-IGWDYCQKS----NYKEMGFLDAYRKALETWAKWVDVNLPPS-KTR 161

Query: 362 AFYRSISPRHFVNGDWNTGGSCDNTTPMSIGKEVLQDESGDYSAGSAVK----GTGVKLL 417
            F+R+ SP HF  G+WNTGGSC  T P+   +               +      T VKLL
Sbjct: 162 VFFRTFSPVHFEGGEWNTGGSCYETEPLLGSEYKGLTPEMIDIVNEVLSRAAMKTPVKLL 221

Query: 418 DITALSQVRDEGHISQYSITAS-RGVQDCLHWCLPGVPDTWNEILFAQL 465
           DIT LSQ R +GH S Y      +  QDCLHWCLPGVPDTWNE+L A L
Sbjct: 222 DITLLSQYRKDGHPSVYRKPGPPKKEQDCLHWCLPGVPDTWNELLLALL 270


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 465
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 99.94
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 97.61
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=2e-112  Score=874.53  Aligned_cols=326  Identities=31%  Similarity=0.627  Sum_probs=268.1

Q ss_pred             ccccCCCCCcCcccceeeCCCCCCcCCCCCchhhhccccccccCCCCcccceeeecCCCCCCCCCCHHHHHHHHcCCcEE
Q 012344          118 TMLEQNQACNYAKGKWVVDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSQFLTRMQDRTLA  197 (465)
Q Consensus       118 ~~~~~~~~CD~f~G~WV~D~~~PlY~~~tCp~fi~~~~nC~~nGRPD~~Yl~WRWqP~~C~LprFd~~~FLe~lRgKrl~  197 (465)
                      ++..+.+.||+|+|+||+|+++|||++++||.||+++|||++|||||++|++|||||++|+||||||.+||++|||||||
T Consensus        45 ~~~~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~  124 (387)
T PLN02629         45 SLQANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVM  124 (387)
T ss_pred             CCCCCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEE
Confidence            46677889999999999999999999999986799999999999999999999999999999999999999999999999


Q ss_pred             EEecchhHHHHHHHHHHhhCCCCCCCcccccccccccccCCCcCCCCceEEeccCCeEEEEEecccccccCCCCCCCCCC
Q 012344          198 FIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEYGLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPAT  277 (465)
Q Consensus       198 FVGDSL~RNq~eSLlCLL~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~~~~f~~yN~TV~fyWSPFLV~~~~~~~~~~~~  277 (465)
                      ||||||+|||||||+|||++++++....        +..++.+    .+|+|++||+||+||||||||+.++.+     .
T Consensus       125 FVGDSL~RNQ~eSLvClL~~~~p~~~~~--------~~~~~~~----~~~~F~~yN~TV~~ywspfLV~~~~~~-----~  187 (387)
T PLN02629        125 FVGDSLGRNQWESLICLISSSVPSTRTQ--------MSRGDPL----STFKFLDYGVSISFYKAPYLVDIDAVQ-----G  187 (387)
T ss_pred             EeccccchhHHHHHHHHhhccCCCCcee--------eecCCce----EEEEeccCCEEEEEEecceEEeeecCC-----C
Confidence            9999999999999999999987643211        1112222    479999999999999999999976432     3


Q ss_pred             ccceeeCCCchhhhhccCcccEEEEcCcccccCCcccCCeeEEEeCCccCCCcchhhhhhHHHHHHHHHHHHHHhhCCCC
Q 012344          278 EYAMHLDRPPAFLRQYLHKFDVLVLNTGHHWNRGKLKANRWVMHVGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEH  357 (465)
Q Consensus       278 ~~~L~LD~~d~~w~~~~~~~DvLVfNtGhWW~r~~~~~~~~~~~~gg~~~~~~~~~~~~~a~~~al~T~~~wV~~~l~~~  357 (465)
                      .++|+||+++.. ++.|+++|||||||||||.+++.. .+|.+++.|....  ..+++..||++||+||++||++++++ 
T Consensus       188 ~~~l~LD~id~~-a~~w~~~DvlVfntghWw~~~~~~-~~~~~~~~g~~~~--~~~~~~~A~r~al~T~~~wv~~~~~~-  262 (387)
T PLN02629        188 KRVLKLEEISGN-ANAWRDADVLIFNTGHWWSHQGSL-QGWDYIESGGTYY--QDMDRLVALEKALRTWAYWVDTNVDR-  262 (387)
T ss_pred             ceeEEecCcchh-hhhhccCCEEEEeCccccCCCCee-EEeeeeccCCccc--cCccHHHHHHHHHHHHHHHHHhcCCC-
Confidence            467999999874 788999999999999999987643 3454443333221  23456789999999999999999987 


Q ss_pred             CCceEEEEeccCCccCCCCCCCCC-----CCC-ccccCCCCcccccCCcchhhhhhhc--cCCceEEeecccccccccCC
Q 012344          358 PRLKAFYRSISPRHFVNGDWNTGG-----SCD-NTTPMSIGKEVLQDESGDYSAGSAV--KGTGVKLLDITALSQVRDEG  429 (465)
Q Consensus       358 ~~t~VffRT~SP~Hfegg~Wn~GG-----~C~-~T~P~~~~e~~~~~~~~~~~~~~~~--~~~~v~lLDIT~lS~lR~Dg  429 (465)
                      .+++|||||+||+||+||+||+||     +|+ +|+|+..++..........++++++  .+.+|+|||||+||+|||||
T Consensus       263 ~kt~vffrT~SP~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~~~~~~~~~~~ve~v~~~~~~~v~lLDIT~ls~lR~Dg  342 (387)
T PLN02629        263 SRTRVFFQSISPTHYNPSEWSAGASTTTKNCYGETTPMSGMTYPGAYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKDG  342 (387)
T ss_pred             CCcEEEEEecCcccccCCCcCCCCCCCCCCCccCCccCcCccccCcchHHHHHHHHHHHhcCCceEEEechhhhhcCCCC
Confidence            478899999999999999999875     586 4899875443211111222444444  34789999999999999999


Q ss_pred             CCcccccCC-------CCCCCCcccccCCCchhHHHHHHHHhC
Q 012344          430 HISQYSITA-------SRGVQDCLHWCLPGVPDTWNEILFAQL  465 (465)
Q Consensus       430 HPs~Y~~~~-------~~~~~DClHWCLPGvpDtWNelLy~~L  465 (465)
                      |||+|+...       +..++||+||||||||||||||||++|
T Consensus       343 HPs~Y~~~~~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L  385 (387)
T PLN02629        343 HPSIYSGDLSPSQRANPDRSADCSHWCLPGLPDTWNQLFYTAL  385 (387)
T ss_pred             CcccccCCCchhhccCCCCCCCcccccCCCCCccHHHHHHHHH
Confidence            999997431       235689999999999999999999987



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 62/452 (13%), Positives = 132/452 (29%), Gaps = 142/452 (31%)

Query: 35  IPAKRKENTESLAEGQAKDKHVVEAEKNSSAENSTILTKTKENGKKNLGE-------KNS 87
           +  K   + E++ E   K  + ++    S +++S+ +     + +  L         +N 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 88  KL------EKESVD------------R-RSSADSANLSSSERIKADENSTMLEQNQACNY 128
            L        ++ +            R +   D  + +++  I  D +S  L  ++  + 
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 129 AKGKWV---VDDSRPLYSGAHCKQWLSQMWACRLMQRTDFAYERLRWQP-KDCQMEEFEG 184
              K++     D        +  + LS +       R   A     W   K    ++   
Sbjct: 307 L-LKYLDCRPQDLPREVLTTN-PRRLSIIAE---SIRDGLA----TWDNWKHVNCDK--- 354

Query: 185 SQFLTRMQDRTLAFIGDSLGRQQFQSL-------------MCMVTGGKERPDVEDVGKE- 230
              LT + + +L  +  +  R+ F  L             + ++     + DV  V  + 
Sbjct: 355 ---LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 231 --YGLVKPRGAIRPNGWAYRFPSTNTTILYYWSACLCDLDPLNITNPATEYAMH---LDR 285
             Y LV+     +P       PS     +Y       +           EYA+H   +D 
Sbjct: 412 HKYSLVE----KQPKESTISIPS-----IYLELKVKLE----------NEYALHRSIVDH 452

Query: 286 ------------PPAFLRQYLHKFDVLVLNTGHH---------------------WNRGK 312
                        P +L QY +         GHH                     +   K
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSH------IGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 313 LKANRWVMH-VGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRH 371
           ++ +    +  G + NT   +  +   K +    I           P+ +    +I    
Sbjct: 507 IRHDSTAWNASGSILNT---LQQLKFYKPY----IC-------DNDPKYERLVNAI--LD 550

Query: 372 FVNGDWNTGGSCDNTTPMSIGKEVLQDESGDY 403
           F+        +   +    + +  L  E    
Sbjct: 551 FLP---KIEENLICSKYTDLLRIALMAEDEAI 579


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 82.14
d3bzwa1248 Uncharacterized protein BT2961 {Bacteroides thetai 82.1
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: BT2961-like
domain: Uncharacterized protein Lp3323
species: Lactobacillus plantarum [TaxId: 1590]
Probab=82.14  E-value=0.19  Score=42.25  Aligned_cols=15  Identities=27%  Similarity=0.465  Sum_probs=12.7

Q ss_pred             HcCCcEEEEecchhH
Q 012344          191 MQDRTLAFIGDSLGR  205 (465)
Q Consensus       191 lRgKrl~FVGDSL~R  205 (465)
                      +..|||+|+|||++-
T Consensus         2 ~~~kri~~iGDSit~   16 (207)
T d3dc7a1           2 VSFKRPAWLGDSITA   16 (207)
T ss_dssp             BCCSSEEEEESTTTS
T ss_pred             CCCCEEEEEehHhhc
Confidence            357899999999984



>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure