BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012345
         (465 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7TN73|CASD1_MOUSE CAS1 domain-containing protein 1 OS=Mus musculus GN=Casd1 PE=2 SV=1
          Length = 797

 Score = 42.4 bits (98), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 172 WQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMV 215
           WQP  C M +++ S+  T + D+ +AFIGDS  RQ F S + ++
Sbjct: 64  WQPHSCMMHKYKISEAKTCLVDKHIAFIGDSRIRQLFYSFVKII 107


>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 41.6 bits (96), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 172 WQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMVTGGKERPDVEDVGKEY 231
           WQP  C + +++ ++    ++++ +AF+GDS  RQ F S + M+      P+V++VG ++
Sbjct: 64  WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMM-----NPEVKEVGNKH 118


>sp|Q96PB1|CASD1_HUMAN CAS1 domain-containing protein 1 OS=Homo sapiens GN=CASD1 PE=2 SV=1
          Length = 797

 Score = 40.0 bits (92), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 172 WQPKDCQMEEFEGSQFLTRMQDRTLAFIGDSLGRQQFQSLMCMV 215
           WQP  C M +++ S+    + D+ +AFIGDS  RQ F S + ++
Sbjct: 64  WQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKII 107


>sp|Q8BH01|TMCO3_MOUSE Transmembrane and coiled-coil domain-containing protein 3 OS=Mus
           musculus GN=Tmco3 PE=2 SV=1
          Length = 678

 Score = 35.0 bits (79), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 37  AKRKENTESLAEGQAKDKHVVEAEKNSSAENSTI--LTKTKENGKKNLGEKNSKLEKESV 94
           A  KE TE   E  A +KH VEA KN   +N ++  L +  E+ +K       ++E+ + 
Sbjct: 145 AAIKEETEY-VELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAF 203

Query: 95  DRRSSADSANLSSSERIKADENST 118
           D   S    N  +  R++ +E S+
Sbjct: 204 DDNKSVKGVNFEAVLRVEEEEASS 227


>sp|Q6UWJ1|TMCO3_HUMAN Transmembrane and coiled-coil domain-containing protein 3 OS=Homo
           sapiens GN=TMCO3 PE=2 SV=1
          Length = 677

 Score = 34.3 bits (77), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 37  AKRKENTESLAEGQAKDKHVVEAEKNSSAENSTI--LTKTKENGKKNLGEKNSKLEKESV 94
           A  KE TE + E  A +KH VEA KN   +N ++  L +  E+ +K       ++E+ + 
Sbjct: 145 AAIKEETEYM-ELLAAEKHQVEALKNMQHQNQSLSMLDEILEDVRKAADRLEEEIEEHAF 203

Query: 95  DRRSSADSANLSSSERIKADE 115
           D   S    N  +  R++ +E
Sbjct: 204 DDNKSVKGVNFEAVLRVEEEE 224


>sp|Q88PP0|HMP_PSEPK Flavohemoprotein OS=Pseudomonas putida (strain KT2440) GN=hmp PE=3
           SV=1
          Length = 392

 Score = 33.9 bits (76), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 327 NTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISP 369
            T R++  I  A+N  +H+   W++     HP+LK FY    P
Sbjct: 283 QTRREVHFIHCARNGAVHAFRDWIDGLAARHPQLKRFYCYAEP 325


>sp|P01708|LV205_HUMAN Ig lambda chain V-II region BUR OS=Homo sapiens PE=1 SV=1
          Length = 109

 Score = 33.5 bits (75), Expect = 4.0,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 322 VGGMPNTNRKIADIAGAKNFTIHSIVSWVNSQLPEHPRLKAFYRSISPRHFVNGDWNTGG 381
           V G P  +  I+ I  + N   +  VSW      + P+L  +   +S R     D  +G 
Sbjct: 10  VSGSPGHSVTISCIGTSSNVGDYKYVSWYQQHPGKAPKLIIY--EVSSRPSGVPDRFSGS 67

Query: 382 SCDNTTPMSIGKEVLQDESGDYSA---GSAVKGTGVKLL 417
              NT  ++I     +DE+  Y     GS V GTG K++
Sbjct: 68  KSGNTASLTISGLQAEDEADYYCCSYIGSYVFGTGTKVI 106


>sp|A4D0V7|CPED1_HUMAN Cadherin-like and PC-esterase domain-containing protein 1 OS=Homo
           sapiens GN=CPED1 PE=2 SV=1
          Length = 1026

 Score = 32.3 bits (72), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 143 SGAHCKQWLSQMWACRLMQRTDFAYERLRWQPKDCQMEEFEGSQFLTRMQDRTLAFIGDS 202
           SG    QW+    +C   +  D  +  + WQP +CQ       Q    +  R + FIGDS
Sbjct: 720 SGDMKGQWIVPCLSCSDNRTCD--WREITWQPHNCQYGVLTKPQLQQCLGGRKILFIGDS 777

Query: 203 LGR 205
             R
Sbjct: 778 TNR 780


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.130    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,232,391
Number of Sequences: 539616
Number of extensions: 7822378
Number of successful extensions: 24270
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 23954
Number of HSP's gapped (non-prelim): 387
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)