Query 012346
Match_columns 465
No_of_seqs 284 out of 1175
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 01:40:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012346.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012346hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1363 Predicted regulator of 100.0 1.4E-45 2.9E-50 380.8 26.2 298 148-464 139-459 (460)
2 cd02991 UAS_ETEA UAS family, E 100.0 5.4E-30 1.2E-34 220.8 14.1 116 170-286 1-116 (116)
3 cd02990 UAS_FAF1 UAS family, F 100.0 7E-30 1.5E-34 223.9 13.6 115 170-285 1-135 (136)
4 KOG2507 Ubiquitin regulatory p 99.9 9.5E-25 2.1E-29 216.6 23.1 286 169-464 2-390 (506)
5 smart00594 UAS UAS domain. 99.9 7.9E-26 1.7E-30 197.0 10.2 119 158-279 2-121 (122)
6 KOG1364 Predicted ubiquitin re 99.9 7.3E-26 1.6E-30 221.2 1.6 227 169-462 114-352 (356)
7 cd02958 UAS UAS family; UAS is 99.9 6.3E-22 1.4E-26 170.2 13.1 113 170-285 1-113 (114)
8 cd01773 Faf1_like1_UBX Faf1 ik 99.9 4.6E-22 9.9E-27 159.0 10.0 78 386-464 3-80 (82)
9 cd01771 Faf1_UBX Faf1 UBX doma 99.9 5.3E-22 1.2E-26 159.3 9.9 78 386-464 2-79 (80)
10 cd01774 Faf1_like2_UBX Faf1 ik 99.8 8.3E-21 1.8E-25 154.1 9.8 77 386-463 2-83 (85)
11 cd01772 SAKS1_UBX SAKS1-like U 99.8 2.9E-20 6.2E-25 149.4 9.7 77 386-463 2-78 (79)
12 smart00166 UBX Domain present 99.8 5.7E-20 1.2E-24 148.1 9.6 78 387-464 3-80 (80)
13 PF00789 UBX: UBX domain; Int 99.8 8.8E-19 1.9E-23 141.8 9.1 78 385-463 3-81 (82)
14 cd01767 UBX UBX (ubiquitin reg 99.8 1.4E-18 3.1E-23 139.0 9.6 74 388-462 2-75 (77)
15 cd01770 p47_UBX p47-like ubiqu 99.7 3.7E-17 8E-22 131.1 9.4 74 387-463 3-77 (79)
16 KOG2689 Predicted ubiquitin re 99.7 1.7E-15 3.7E-20 143.9 15.1 78 387-464 209-286 (290)
17 PF14555 UBA_4: UBA-like domai 99.1 7.6E-11 1.7E-15 83.3 3.8 41 5-46 1-41 (43)
18 PF13899 Thioredoxin_7: Thiore 99.0 1.3E-09 2.8E-14 88.0 9.0 80 172-254 3-82 (82)
19 KOG2086 Protein tyrosine phosp 98.9 1.5E-09 3.3E-14 108.8 6.3 72 386-459 303-375 (380)
20 cd02951 SoxW SoxW family; SoxW 98.6 4.5E-07 9.8E-12 78.7 11.9 109 175-286 2-122 (125)
21 cd02960 AGR Anterior Gradient 98.6 2.7E-07 5.9E-12 80.8 9.8 95 168-270 6-100 (130)
22 cd02955 SSP411 TRX domain, SSP 98.5 1.9E-06 4.2E-11 75.2 12.3 82 176-258 5-92 (124)
23 cd02953 DsbDgamma DsbD gamma f 98.3 4.9E-06 1.1E-10 69.7 9.4 100 177-279 2-103 (104)
24 COG2143 Thioredoxin-related pr 98.2 1.1E-05 2.4E-10 71.7 9.6 104 175-282 31-148 (182)
25 PF13098 Thioredoxin_2: Thiore 98.1 3.4E-06 7.4E-11 71.4 4.1 94 182-279 1-112 (112)
26 PF03190 Thioredox_DsbH: Prote 97.9 0.00015 3.3E-09 65.9 11.0 94 161-255 13-112 (163)
27 PRK00293 dipZ thiol:disulfide 97.8 9.1E-05 2E-09 80.8 10.9 107 173-282 461-569 (571)
28 cd02959 ERp19 Endoplasmic reti 97.6 0.00011 2.5E-09 63.3 6.4 106 174-284 7-114 (117)
29 cd02950 TxlA TRX-like protein 97.3 0.0016 3.5E-08 58.1 10.1 100 180-286 14-113 (142)
30 PF11543 UN_NPL4: Nuclear pore 97.3 0.00064 1.4E-08 54.6 6.0 76 388-464 4-79 (80)
31 cd01806 Nedd8 Nebb8-like ubiq 97.0 0.0033 7.2E-08 49.3 7.5 69 390-463 2-70 (76)
32 cd02949 TRX_NTR TRX domain, no 96.8 0.018 3.9E-07 47.4 11.0 96 173-279 1-96 (97)
33 cd01807 GDX_N ubiquitin-like d 96.8 0.0049 1.1E-07 48.5 7.0 69 390-463 2-70 (74)
34 cd01792 ISG15_repeat1 ISG15 ub 96.8 0.0069 1.5E-07 48.5 7.7 72 389-463 3-74 (80)
35 cd01791 Ubl5 UBL5 ubiquitin-li 96.8 0.0081 1.8E-07 47.3 7.8 70 389-463 2-71 (73)
36 PRK10996 thioredoxin 2; Provis 96.7 0.021 4.6E-07 50.6 11.4 95 178-282 44-138 (139)
37 PTZ00044 ubiquitin; Provisiona 96.7 0.0069 1.5E-07 47.7 7.0 69 390-463 2-70 (76)
38 cd01794 DC_UbP_C dendritic cel 96.6 0.0063 1.4E-07 47.5 6.4 69 391-464 1-69 (70)
39 PF00085 Thioredoxin: Thioredo 96.6 0.016 3.5E-07 47.4 9.2 96 173-281 7-102 (103)
40 cd02997 PDI_a_PDIR PDIa family 96.5 0.017 3.6E-07 47.6 8.7 88 183-278 14-103 (104)
41 cd01809 Scythe_N Ubiquitin-lik 96.5 0.01 2.2E-07 46.0 6.7 70 389-463 1-70 (72)
42 cd02956 ybbN ybbN protein fami 96.5 0.032 7E-07 45.5 10.0 94 174-279 2-95 (96)
43 cd01798 parkin_N amino-termina 96.4 0.011 2.4E-07 45.9 6.4 68 391-463 1-68 (70)
44 cd01803 Ubiquitin Ubiquitin. U 96.4 0.015 3.3E-07 45.5 7.1 69 390-463 2-70 (76)
45 cd01812 BAG1_N Ubiquitin-like 96.3 0.018 3.8E-07 44.6 7.1 71 389-465 1-71 (71)
46 TIGR01068 thioredoxin thioredo 96.3 0.061 1.3E-06 43.6 10.7 89 184-282 12-100 (101)
47 PF03943 TAP_C: TAP C-terminal 96.3 0.0052 1.1E-07 44.9 3.6 42 5-47 1-42 (51)
48 cd01804 midnolin_N Ubiquitin-l 96.3 0.019 4.1E-07 45.7 7.3 69 389-463 2-70 (78)
49 TIGR01126 pdi_dom protein disu 96.1 0.04 8.6E-07 45.0 8.7 94 174-281 5-100 (102)
50 cd01805 RAD23_N Ubiquitin-like 96.1 0.029 6.2E-07 44.2 7.4 69 390-463 2-72 (77)
51 cd01810 ISG15_repeat2 ISG15 ub 96.1 0.02 4.3E-07 45.0 6.4 68 391-463 1-68 (74)
52 TIGR00385 dsbE periplasmic pro 96.0 0.071 1.5E-06 48.9 10.7 92 183-284 60-172 (173)
53 cd01796 DDI1_N DNA damage indu 96.0 0.024 5.1E-07 44.3 6.3 69 391-463 1-70 (71)
54 TIGR02739 TraF type-F conjugat 96.0 0.076 1.6E-06 52.1 11.1 92 186-286 150-251 (256)
55 cd02961 PDI_a_family Protein D 95.9 0.055 1.2E-06 43.5 8.6 92 178-278 7-100 (101)
56 cd02947 TRX_family TRX family; 95.9 0.091 2E-06 41.3 9.5 83 184-279 8-92 (93)
57 PF00240 ubiquitin: Ubiquitin 95.8 0.04 8.6E-07 42.4 7.1 65 394-463 1-65 (69)
58 cd03002 PDI_a_MPD1_like PDI fa 95.8 0.061 1.3E-06 44.8 8.6 102 172-279 7-108 (109)
59 PF00627 UBA: UBA/TS-N domain; 95.8 0.016 3.4E-07 39.3 3.9 34 4-39 2-35 (37)
60 smart00804 TAP_C C-terminal do 95.7 0.016 3.5E-07 44.3 4.3 39 4-43 12-50 (63)
61 cd02985 TRX_CDSP32 TRX family, 95.7 0.2 4.4E-06 41.7 11.4 91 175-279 6-99 (103)
62 cd02963 TRX_DnaJ TRX domain, D 95.7 0.13 2.9E-06 43.5 10.3 97 174-280 10-109 (111)
63 cd02984 TRX_PICOT TRX domain, 95.6 0.097 2.1E-06 42.6 9.0 92 174-278 4-95 (97)
64 cd01802 AN1_N ubiquitin-like d 95.6 0.061 1.3E-06 45.3 7.8 72 387-463 26-97 (103)
65 PRK13703 conjugal pilus assemb 95.5 0.14 3E-06 50.1 11.0 92 187-287 144-245 (248)
66 cd01808 hPLIC_N Ubiquitin-like 95.5 0.055 1.2E-06 42.1 6.8 68 390-463 2-69 (71)
67 cd02993 PDI_a_APS_reductase PD 95.5 0.094 2E-06 44.2 8.7 92 178-277 13-107 (109)
68 PRK09381 trxA thioredoxin; Pro 95.2 0.29 6.2E-06 40.9 10.7 89 184-282 19-107 (109)
69 cd02948 TRX_NDPK TRX domain, T 95.0 0.38 8.2E-06 39.9 10.7 88 181-280 12-100 (102)
70 KOG1363 Predicted regulator of 94.9 0.096 2.1E-06 55.5 8.5 76 259-334 257-333 (460)
71 PRK03147 thiol-disulfide oxido 94.9 0.13 2.9E-06 46.5 8.5 87 185-281 60-170 (173)
72 cd01763 Sumo Small ubiquitin-r 94.9 0.26 5.6E-06 40.1 9.2 73 386-463 9-81 (87)
73 PF13728 TraF: F plasmid trans 94.8 0.24 5.2E-06 47.4 10.2 85 186-279 120-214 (215)
74 cd03011 TlpA_like_ScsD_MtbDsbE 94.7 0.09 2E-06 44.8 6.4 91 182-279 16-122 (123)
75 cd03000 PDI_a_TMX3 PDIa family 94.7 0.26 5.6E-06 40.9 8.9 96 174-281 4-102 (104)
76 COG4232 Thiol:disulfide interc 94.4 0.18 3.8E-06 54.4 8.9 100 178-282 464-567 (569)
77 cd02995 PDI_a_PDI_a'_C PDIa fa 94.4 0.24 5.2E-06 40.5 8.1 86 183-277 15-102 (104)
78 cd02996 PDI_a_ERp44 PDIa famil 94.4 0.34 7.3E-06 40.5 9.1 93 173-278 9-107 (108)
79 KOG1029 Endocytic adaptor prot 94.0 1.4 3E-05 48.8 14.6 28 6-33 20-47 (1118)
80 smart00165 UBA Ubiquitin assoc 93.9 0.1 2.2E-06 35.1 4.0 35 5-41 2-36 (37)
81 cd01797 NIRF_N amino-terminal 93.9 0.27 5.8E-06 39.2 7.0 69 390-463 2-72 (78)
82 TIGR02740 TraF-like TraF-like 93.7 0.97 2.1E-05 44.8 12.2 92 183-283 163-264 (271)
83 cd03003 PDI_a_ERdj5_N PDIa fam 93.6 0.6 1.3E-05 38.4 9.1 90 174-277 10-99 (101)
84 PRK15412 thiol:disulfide inter 93.6 0.89 1.9E-05 42.1 11.2 92 185-286 67-179 (185)
85 cd03004 PDI_a_ERdj5_C PDIa fam 93.5 0.92 2E-05 37.3 10.1 92 174-277 10-102 (104)
86 cd03065 PDI_b_Calsequestrin_N 93.4 1.2 2.6E-05 38.6 10.8 99 172-283 16-119 (120)
87 PTZ00443 Thioredoxin domain-co 93.4 2.4 5.3E-05 40.8 14.0 105 171-285 36-141 (224)
88 cd02999 PDI_a_ERp44_like PDIa 93.4 0.48 1E-05 39.4 8.0 84 183-277 15-98 (100)
89 cd03001 PDI_a_P5 PDIa family, 93.3 1.1 2.4E-05 36.5 10.2 86 184-278 16-101 (103)
90 cd01813 UBP_N UBP ubiquitin pr 93.2 0.41 8.8E-06 37.7 7.0 69 390-462 2-71 (74)
91 cd03006 PDI_a_EFP1_N PDIa fami 93.2 0.78 1.7E-05 39.2 9.2 96 171-277 15-111 (113)
92 PTZ00051 thioredoxin; Provisio 93.1 1.1 2.4E-05 36.3 9.9 85 177-275 9-95 (98)
93 PHA02278 thioredoxin-like prot 93.1 1.2 2.6E-05 37.4 10.1 83 184-277 12-99 (103)
94 cd00194 UBA Ubiquitin Associat 93.0 0.18 4E-06 34.0 4.1 36 5-42 2-37 (38)
95 cd01793 Fubi Fubi ubiquitin-li 93.0 0.48 1E-05 37.0 7.1 67 390-463 2-68 (74)
96 cd01769 UBL Ubiquitin-like dom 92.9 0.39 8.5E-06 36.2 6.3 66 393-463 2-67 (69)
97 PF13881 Rad60-SLD_2: Ubiquiti 92.9 0.88 1.9E-05 38.9 9.0 68 387-459 1-76 (111)
98 TIGR00601 rad23 UV excision re 92.8 0.32 6.9E-06 50.5 7.4 69 390-463 2-73 (378)
99 COG1331 Highly conserved prote 92.8 0.41 8.9E-06 52.5 8.4 120 167-288 24-155 (667)
100 smart00213 UBQ Ubiquitin homol 92.5 0.46 1E-05 35.3 6.2 62 390-457 2-63 (64)
101 cd02998 PDI_a_ERp38 PDIa famil 92.4 0.45 9.7E-06 38.9 6.6 87 183-277 15-103 (105)
102 cd03005 PDI_a_ERp46 PDIa famil 92.3 1.1 2.5E-05 36.3 9.0 89 174-277 9-100 (102)
103 KOG0910 Thioredoxin-like prote 92.3 0.98 2.1E-05 40.5 8.9 98 173-283 48-148 (150)
104 cd02975 PfPDO_like_N Pyrococcu 92.0 2.5 5.4E-05 35.9 10.9 95 181-284 17-111 (113)
105 cd02994 PDI_a_TMX PDIa family, 92.0 1.2 2.5E-05 36.5 8.6 92 172-280 8-100 (101)
106 PF14836 Ubiquitin_3: Ubiquiti 91.8 0.64 1.4E-05 37.9 6.5 64 400-464 15-79 (88)
107 cd01814 NTGP5 Ubiquitin-like N 91.8 0.45 9.9E-06 40.5 5.8 72 387-463 3-88 (113)
108 PF14560 Ubiquitin_2: Ubiquiti 91.7 1.2 2.5E-05 36.1 8.0 75 389-463 2-81 (87)
109 PLN00410 U5 snRNP protein, DIM 91.3 3.5 7.5E-05 36.8 11.3 101 174-284 13-121 (142)
110 cd01799 Hoil1_N Ubiquitin-like 91.2 0.62 1.3E-05 36.8 5.8 65 394-463 8-73 (75)
111 PF11976 Rad60-SLD: Ubiquitin- 91.0 1.1 2.3E-05 34.6 6.9 69 389-462 1-70 (72)
112 cd01800 SF3a120_C Ubiquitin-li 90.8 0.65 1.4E-05 36.6 5.6 62 397-463 6-67 (76)
113 cd02986 DLP Dim1 family, Dim1- 90.7 3.1 6.7E-05 35.7 9.9 98 173-282 3-110 (114)
114 cd02982 PDI_b'_family Protein 90.7 1.2 2.7E-05 36.3 7.5 88 186-281 12-101 (103)
115 TIGR01295 PedC_BrcD bacterioci 90.6 4.6 0.0001 34.8 11.3 94 173-278 11-119 (122)
116 KOG2086 Protein tyrosine phosp 90.5 0.13 2.7E-06 52.6 1.5 44 1-45 1-44 (380)
117 cd00196 UBQ Ubiquitin-like pro 90.5 1 2.3E-05 31.8 6.2 67 393-464 2-68 (69)
118 cd02957 Phd_like Phosducin (Ph 90.5 2.7 5.8E-05 35.5 9.5 69 186-268 24-94 (113)
119 KOG0163 Myosin class VI heavy 90.2 6.2 0.00013 43.9 13.8 14 177-190 739-752 (1259)
120 PF02845 CUE: CUE domain; Int 89.8 0.45 9.7E-06 33.1 3.4 39 5-43 2-40 (42)
121 PTZ00102 disulphide isomerase; 89.6 1.5 3.3E-05 46.5 9.0 98 172-284 39-139 (477)
122 cd03010 TlpA_like_DsbE TlpA-li 89.4 1.7 3.7E-05 37.2 7.6 36 235-274 90-125 (127)
123 cd02989 Phd_like_TxnDC9 Phosdu 89.3 4.2 9.2E-05 34.5 9.8 75 182-269 18-94 (113)
124 cd02965 HyaE HyaE family; HyaE 89.2 4.8 0.0001 34.4 9.9 93 168-277 13-110 (111)
125 cd02954 DIM1 Dim1 family; Dim1 88.7 10 0.00022 32.6 11.6 62 185-254 13-77 (114)
126 KOG1029 Endocytic adaptor prot 88.7 12 0.00027 41.7 14.7 11 224-234 234-244 (1118)
127 cd02966 TlpA_like_family TlpA- 88.6 1.2 2.7E-05 36.1 5.9 70 180-255 13-107 (116)
128 TIGR01130 ER_PDI_fam protein d 88.3 2.3 4.9E-05 44.7 9.1 99 173-284 9-110 (462)
129 KOG0163 Myosin class VI heavy 88.2 14 0.00031 41.1 14.8 11 408-418 1069-1079(1259)
130 PTZ00266 NIMA-related protein 87.8 4.9 0.00011 47.0 11.8 11 151-161 225-235 (1021)
131 KOG0907 Thioredoxin [Posttrans 87.7 6.3 0.00014 33.3 9.7 84 173-269 8-93 (106)
132 KOG4351 Uncharacterized conser 87.7 0.17 3.6E-06 48.1 0.0 45 3-47 22-68 (244)
133 COG4942 Membrane-bound metallo 87.6 11 0.00024 39.5 13.1 23 389-412 295-318 (420)
134 PRK11509 hydrogenase-1 operon 87.3 3 6.6E-05 36.7 7.7 60 222-288 70-129 (132)
135 smart00546 CUE Domain that may 87.0 1.9 4.2E-05 29.9 5.2 41 4-44 2-42 (43)
136 cd02992 PDI_a_QSOX PDIa family 86.9 2.2 4.8E-05 36.2 6.6 77 172-254 8-87 (114)
137 TIGR00424 APS_reduc 5'-adenyly 86.8 4.7 0.0001 43.0 10.3 103 170-280 356-460 (463)
138 TIGR02738 TrbB type-F conjugat 85.9 6.3 0.00014 35.6 9.3 86 188-282 52-152 (153)
139 cd02969 PRX_like1 Peroxiredoxi 84.9 8.4 0.00018 34.8 9.8 50 236-287 100-156 (171)
140 cd02987 Phd_like_Phd Phosducin 84.2 7.9 0.00017 35.7 9.4 82 173-269 71-154 (175)
141 cd03009 TryX_like_TryX_NRX Try 82.5 5.7 0.00012 34.1 7.3 65 185-255 17-109 (131)
142 PTZ00062 glutaredoxin; Provisi 81.6 25 0.00055 33.3 11.8 80 182-283 13-94 (204)
143 PF08817 YukD: WXG100 protein 81.1 5.6 0.00012 31.5 6.2 71 388-462 2-78 (79)
144 cd01815 BMSC_UbP_N Ubiquitin-l 79.5 4.1 9E-05 32.2 4.8 52 406-462 18-72 (75)
145 PRK13728 conjugal transfer pro 79.2 21 0.00045 33.3 10.1 87 190-285 73-173 (181)
146 cd01789 Alp11_N Ubiquitin-like 78.8 17 0.00036 29.2 8.3 74 389-463 2-79 (84)
147 cd02964 TryX_like_family Trypa 78.7 9.3 0.0002 32.9 7.4 71 179-255 10-109 (132)
148 PLN02309 5'-adenylylsulfate re 77.9 15 0.00032 39.3 9.8 101 173-281 353-455 (457)
149 cd01795 USP48_C USP ubiquitin- 77.8 5.8 0.00013 33.1 5.3 57 404-464 20-76 (107)
150 cd01790 Herp_N Homocysteine-re 77.8 12 0.00027 29.9 7.1 68 389-461 2-75 (79)
151 PF11470 TUG-UBL1: GLUT4 regul 77.1 8.6 0.00019 29.6 5.8 62 395-461 3-64 (65)
152 cd02962 TMX2 TMX2 family; comp 76.9 16 0.00035 32.9 8.5 83 174-268 37-126 (152)
153 PF09379 FERM_N: FERM N-termin 76.4 9 0.00019 29.9 6.1 69 393-461 1-73 (80)
154 cd03017 PRX_BCP Peroxiredoxin 75.7 29 0.00063 29.7 9.7 60 213-278 70-138 (140)
155 KOG4364 Chromatin assembly fac 75.7 68 0.0015 35.5 13.9 16 449-464 456-471 (811)
156 PF07946 DUF1682: Protein of u 75.6 97 0.0021 31.5 15.0 18 202-220 170-187 (321)
157 cd02988 Phd_like_VIAF Phosduci 75.2 55 0.0012 30.6 12.0 80 173-269 90-171 (192)
158 KOG3878 Protein involved in ma 75.0 24 0.00053 35.6 9.7 59 241-300 73-135 (469)
159 PTZ00102 disulphide isomerase; 74.7 7.4 0.00016 41.3 6.7 101 172-284 364-466 (477)
160 KOG2002 TPR-containing nuclear 73.6 52 0.0011 38.0 13.0 11 171-181 658-668 (1018)
161 TIGR00411 redox_disulf_1 small 73.4 37 0.0008 26.0 8.9 76 190-282 3-81 (82)
162 PLN02560 enoyl-CoA reductase 73.4 16 0.00034 37.0 8.2 72 390-463 2-81 (308)
163 PRK14018 trifunctional thiored 72.9 19 0.00042 39.0 9.3 42 235-280 129-170 (521)
164 cd02952 TRP14_like Human TRX-r 72.9 20 0.00043 30.9 7.7 69 185-253 20-98 (119)
165 KOG4364 Chromatin assembly fac 72.3 50 0.0011 36.5 11.9 11 275-285 248-258 (811)
166 PRK10382 alkyl hydroperoxide r 72.2 40 0.00087 31.4 10.2 92 185-280 30-153 (187)
167 KOG1144 Translation initiation 72.2 22 0.00047 40.0 9.4 7 277-283 217-223 (1064)
168 cd03012 TlpA_like_DipZ_like Tl 70.7 21 0.00046 30.4 7.5 29 236-268 96-124 (126)
169 TIGR02187 GlrX_arch Glutaredox 70.6 38 0.00082 32.0 9.9 89 185-283 19-111 (215)
170 PRK15000 peroxidase; Provision 70.0 41 0.00089 31.6 9.9 47 185-233 33-80 (200)
171 KOG2002 TPR-containing nuclear 69.7 65 0.0014 37.2 12.6 7 271-277 774-780 (1018)
172 PF13905 Thioredoxin_8: Thiore 69.5 29 0.00062 27.6 7.7 59 185-255 33-92 (95)
173 cd01801 Tsc13_N Ubiquitin-like 69.2 17 0.00036 28.6 6.0 55 406-463 20-75 (77)
174 cd03008 TryX_like_RdCVF Trypar 69.2 17 0.00038 32.5 6.8 45 212-257 78-123 (146)
175 KOG2072 Translation initiation 68.0 1.1E+02 0.0023 34.9 13.6 14 173-186 463-476 (988)
176 cd03015 PRX_Typ2cys Peroxiredo 67.6 45 0.00098 30.1 9.4 49 182-232 25-74 (173)
177 PF13848 Thioredoxin_6: Thiore 67.2 29 0.00062 31.2 8.1 104 168-280 77-183 (184)
178 PRK13190 putative peroxiredoxi 65.3 49 0.0011 31.1 9.4 44 236-281 101-152 (202)
179 COG5100 NPL4 Nuclear pore prot 65.0 18 0.0004 37.4 6.6 71 390-464 2-78 (571)
180 TIGR02661 MauD methylamine deh 64.5 79 0.0017 29.2 10.5 21 236-257 137-157 (189)
181 cd03007 PDI_a_ERp29_N PDIa fam 63.8 42 0.00092 28.8 7.8 92 173-280 9-113 (116)
182 TIGR01130 ER_PDI_fam protein d 63.2 27 0.00058 36.6 7.9 98 171-281 352-452 (462)
183 TIGR03137 AhpC peroxiredoxin. 62.1 71 0.0015 29.5 9.7 47 185-233 30-77 (187)
184 KOG3054 Uncharacterized conser 61.7 75 0.0016 30.9 9.6 12 410-421 201-212 (299)
185 PRK13189 peroxiredoxin; Provis 61.2 57 0.0012 31.2 9.1 47 185-233 34-81 (222)
186 PLN02919 haloacid dehalogenase 60.2 51 0.0011 39.2 10.2 94 185-288 419-541 (1057)
187 cd02967 mauD Methylamine utili 59.5 53 0.0011 27.0 7.7 18 237-254 87-104 (114)
188 PRK06369 nac nascent polypepti 59.4 13 0.00029 31.8 3.9 36 5-41 77-112 (115)
189 PTZ00121 MAEBL; Provisional 59.0 1.3E+02 0.0028 36.7 12.5 10 244-253 995-1004(2084)
190 TIGR00264 alpha-NAC-related pr 58.5 14 0.00031 31.6 3.9 35 5-40 79-113 (116)
191 PLN03086 PRLI-interacting fact 57.6 58 0.0013 35.7 9.3 22 401-422 142-163 (567)
192 TIGR00116 tsf translation elon 57.5 15 0.00031 36.9 4.4 41 1-42 1-41 (290)
193 COG3118 Thioredoxin domain-con 57.2 97 0.0021 31.2 10.0 87 186-285 43-132 (304)
194 PTZ00056 glutathione peroxidas 56.7 1.4E+02 0.0031 27.8 10.9 33 249-285 148-180 (199)
195 PLN02399 phospholipid hydroper 56.4 84 0.0018 30.5 9.4 35 245-283 200-234 (236)
196 cd02983 P5_C P5 family, C-term 55.9 66 0.0014 28.0 7.9 67 213-285 48-117 (130)
197 PRK09437 bcp thioredoxin-depen 54.0 1.2E+02 0.0026 26.5 9.5 23 247-273 121-143 (154)
198 PTZ00253 tryparedoxin peroxida 53.6 1.2E+02 0.0027 28.1 9.9 47 185-233 35-82 (199)
199 TIGR02187 GlrX_arch Glutaredox 52.7 1E+02 0.0022 29.1 9.2 82 184-281 130-214 (215)
200 PF06110 DUF953: Eukaryotic pr 52.4 19 0.0004 31.2 3.7 80 175-254 8-98 (119)
201 PRK12332 tsf elongation factor 51.4 23 0.00049 33.5 4.4 41 1-42 1-41 (198)
202 PRK09377 tsf elongation factor 50.5 22 0.00047 35.7 4.4 39 4-43 5-43 (290)
203 PRK00247 putative inner membra 50.2 3.4E+02 0.0074 28.8 13.6 14 208-221 143-156 (429)
204 CHL00098 tsf elongation factor 49.2 24 0.00051 33.4 4.2 36 5-41 2-37 (200)
205 smart00295 B41 Band 4.1 homolo 49.0 1.1E+02 0.0023 28.1 8.7 67 388-454 3-71 (207)
206 PF02196 RBD: Raf-like Ras-bin 49.0 57 0.0012 25.3 5.7 55 390-444 2-56 (71)
207 PF01216 Calsequestrin: Calseq 47.7 69 0.0015 32.9 7.3 105 169-285 38-146 (383)
208 PTZ00137 2-Cys peroxiredoxin; 47.6 1.7E+02 0.0038 28.8 10.1 92 185-280 97-222 (261)
209 KOG2756 Predicted Mg2+-depende 46.3 16 0.00034 36.1 2.5 38 7-44 27-64 (349)
210 PHA02125 thioredoxin-like prot 45.8 56 0.0012 25.1 5.3 72 189-279 1-73 (75)
211 KOG3054 Uncharacterized conser 45.7 2.1E+02 0.0046 27.9 9.9 11 409-419 230-240 (299)
212 KOG0191 Thioredoxin/protein di 45.6 1E+02 0.0023 31.8 8.8 92 184-285 45-136 (383)
213 KOG3654 Uncharacterized CH dom 45.2 1.7E+02 0.0037 31.4 9.9 11 343-353 432-442 (708)
214 PF11547 E3_UbLigase_EDD: E3 u 45.2 60 0.0013 23.4 4.6 39 5-43 10-48 (53)
215 cd01659 TRX_superfamily Thiore 44.4 41 0.00088 22.9 4.1 39 216-254 23-62 (69)
216 PF00578 AhpC-TSA: AhpC/TSA fa 43.6 55 0.0012 27.1 5.4 43 185-233 24-71 (124)
217 KOG0010 Ubiquitin-like protein 42.7 61 0.0013 34.6 6.4 70 387-462 14-83 (493)
218 PF06972 DUF1296: Protein of u 41.7 66 0.0014 24.2 4.6 40 5-44 6-45 (60)
219 cd01760 RBD Ubiquitin-like dom 41.2 89 0.0019 24.5 5.6 44 391-434 2-45 (72)
220 cd03016 PRX_1cys Peroxiredoxin 39.5 2.3E+02 0.0049 26.4 9.4 14 220-233 58-71 (203)
221 PRK13191 putative peroxiredoxi 39.3 1.6E+02 0.0035 27.9 8.3 48 185-234 32-80 (215)
222 KOG2357 Uncharacterized conser 38.3 4.6E+02 0.0099 27.7 11.6 7 213-219 284-290 (440)
223 cd01777 SNX27_RA Ubiquitin dom 38.3 70 0.0015 26.1 4.7 35 389-423 2-36 (87)
224 PF15236 CCDC66: Coiled-coil d 38.3 3.1E+02 0.0067 24.9 11.9 77 302-378 47-124 (157)
225 PF08207 EFP_N: Elongation fac 37.4 52 0.0011 24.5 3.6 30 382-411 28-58 (58)
226 KOG4691 Uncharacterized conser 36.9 3.6E+02 0.0079 25.3 11.9 11 389-399 207-217 (227)
227 TIGR01626 ytfJ_HI0045 conserve 36.6 2.2E+02 0.0048 26.5 8.5 41 232-277 133-174 (184)
228 PRK13599 putative peroxiredoxi 36.5 3.1E+02 0.0067 26.0 9.8 10 245-254 118-127 (215)
229 COG1225 Bcp Peroxiredoxin [Pos 36.4 3.3E+02 0.0072 24.7 10.1 67 164-235 7-78 (157)
230 cd03072 PDI_b'_ERp44 PDIb' fam 35.5 1.6E+02 0.0034 24.8 6.8 62 218-284 46-109 (111)
231 cd03073 PDI_b'_ERp72_ERp57 PDI 33.4 2E+02 0.0044 24.2 7.2 85 186-280 15-108 (111)
232 cd03013 PRX5_like Peroxiredoxi 32.6 1.1E+02 0.0024 27.3 5.7 57 185-243 28-88 (155)
233 KOG2244 Highly conserved prote 32.4 37 0.00081 36.7 2.9 85 169-254 96-186 (786)
234 COG3122 Uncharacterized protei 31.5 4.3E+02 0.0094 24.6 10.8 26 390-415 128-153 (215)
235 PF08534 Redoxin: Redoxin; In 31.3 2.1E+02 0.0046 24.5 7.3 34 234-271 94-136 (146)
236 PF03765 CRAL_TRIO_N: CRAL/TRI 31.1 55 0.0012 23.6 2.9 23 19-41 30-52 (55)
237 PRK00522 tpx lipid hydroperoxi 30.5 1E+02 0.0022 27.8 5.2 12 185-196 43-54 (167)
238 PRK00247 putative inner membra 29.2 3.1E+02 0.0067 29.2 9.0 8 91-98 110-117 (429)
239 cd01818 TIAM1_RBD Ubiquitin do 29.0 1.2E+02 0.0026 24.1 4.5 39 393-431 4-42 (77)
240 COG3531 Predicted protein-disu 29.0 1.2E+02 0.0025 28.8 5.2 47 234-283 163-209 (212)
241 COG0264 Tsf Translation elonga 29.0 85 0.0018 31.4 4.6 40 1-41 1-41 (296)
242 cd01817 RGS12_RBD Ubiquitin do 27.4 2.9E+02 0.0063 21.8 6.4 58 392-449 3-60 (73)
243 smart00455 RBD Raf-like Ras-bi 27.3 2.7E+02 0.0059 21.5 6.3 43 391-433 2-44 (70)
244 COG1308 EGD2 Transcription fac 27.0 53 0.0011 28.5 2.4 34 6-40 86-119 (122)
245 PLN03086 PRLI-interacting fact 26.8 4.4E+02 0.0096 29.1 9.9 6 394-399 180-185 (567)
246 KOG3915 Transcription regulato 26.3 8.3E+02 0.018 26.2 11.9 15 269-283 498-512 (641)
247 KOG0011 Nucleotide excision re 26.3 1.8E+02 0.0039 29.6 6.3 68 390-462 2-71 (340)
248 PRK06569 F0F1 ATP synthase sub 26.1 5E+02 0.011 23.5 11.0 20 309-328 62-81 (155)
249 PRK05441 murQ N-acetylmuramic 25.3 71 0.0015 32.1 3.4 34 10-44 241-274 (299)
250 KOG0912 Thiol-disulfide isomer 25.2 1E+02 0.0022 31.2 4.3 91 186-283 13-106 (375)
251 KOG2456 Aldehyde dehydrogenase 25.1 64 0.0014 33.8 3.0 38 160-197 334-371 (477)
252 PF07946 DUF1682: Protein of u 24.5 3.8E+02 0.0082 27.1 8.6 12 304-315 261-272 (321)
253 KOG3654 Uncharacterized CH dom 24.3 5E+02 0.011 28.1 9.3 13 408-420 507-519 (708)
254 cd02973 TRX_GRX_like Thioredox 23.8 2.9E+02 0.0062 20.1 5.9 56 190-251 3-58 (67)
255 PF13019 Telomere_Sde2: Telome 22.5 2.9E+02 0.0063 25.3 6.4 45 390-434 2-51 (162)
256 PF05262 Borrelia_P83: Borreli 22.3 6.6E+02 0.014 27.2 10.1 78 295-373 204-281 (489)
257 cd00340 GSH_Peroxidase Glutath 22.3 5.2E+02 0.011 22.5 8.2 26 248-277 125-150 (152)
258 cd03018 PRX_AhpE_like Peroxire 21.8 2.1E+02 0.0046 24.5 5.5 31 235-269 97-133 (149)
259 TIGR00570 cdk7 CDK-activating 21.1 8.8E+02 0.019 24.6 10.2 9 210-218 31-39 (309)
260 KOG1071 Mitochondrial translat 21.0 1.1E+02 0.0024 31.0 3.7 35 4-39 46-80 (340)
No 1
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-45 Score=380.82 Aligned_cols=298 Identities=36% Similarity=0.565 Sum_probs=244.5
Q ss_pred hHHHHHH-HHHHHHHhhCCCCCCccccCHHHHHHHHHh-c---CcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccc
Q 012346 148 AALEAME-FVAVFERDYGNVKPNFVSEGFMDALQRSRS-V---FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENF 222 (465)
Q Consensus 148 ~~~~~~~-f~~~~~~~yg~~~p~f~~gs~~eAl~~Ak~-e---~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~f 222 (465)
+.+++.. |+++|.++||..||.||.|++..|...|.+ + .|+|++|+|++.+.++..||..+|||+.|++||+++|
T Consensus 139 p~~~~~~~f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~~~~ 218 (460)
T KOG1363|consen 139 PQGDSRETFVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLRENF 218 (460)
T ss_pred CcchHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHhhce
Confidence 4556665 999999999999999999998888877743 3 6999999999999999999999999999999999999
Q ss_pred eEeecccCchHHHHHHHhCCCC----------------CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 223 VSWGGSIRASEGFKMSNSLKAS----------------RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 223 v~w~~~v~~~Eg~~va~~l~~~----------------~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
|+|+|||++++++.+++.+++. .||.+.+|.... ...+++..++|.++..+.+..+..++..+
T Consensus 219 llw~~dvt~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~-~~~Ell~~l~g~~~~~e~~~~~~~~~~~~ 297 (460)
T KOG1363|consen 219 LLWGWDVTESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSR-SPEELLRYLQGVTGVDEEMTLLLVAFEEE 297 (460)
T ss_pred eeecccccCchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCC-CHHHHHHHHHhcCCchHHHHHHHhhhhhh
Confidence 9999999999999999999887 688888888653 45678888889999999999888888888
Q ss_pred cHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012346 287 NPALLQARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKHKEEVEAREREAREAAEREAA 366 (465)
Q Consensus 287 ~~~L~~~r~e~~er~~~r~lreeQd~aY~~SL~~D~ek~~~r~ee~e~~~~~~~e~e~k~~eeee~~~~~~~e~~~~~~~ 366 (465)
...+...+.++.++..+..+++|||.+|++||++|+.|+.++. ++.+++.. ++++++++ ++++
T Consensus 298 ~~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~~e~e---~~~e~~r~--e~er~~~~----------ee~e-- 360 (460)
T KOG1363|consen 298 ERRLQMRRSEQDEREARLALEQEQDDEYQASLEADRVREAEAE---QAAEEFRL--EKERKEEE----------EERE-- 360 (460)
T ss_pred hHHHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HhhHHHHH--hhhhhhHH----------HHHH--
Confidence 7777666666667776677788899999999999999822111 11111111 11111111 1111
Q ss_pred HHHHHHHHHHhcCCCCCC-CCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCc
Q 012346 367 LAKMRQEKALSLGAEPEK-GPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKF 445 (465)
Q Consensus 367 ~~~~r~~~~~~lp~EP~~-~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~ 445 (465)
..+++.+..+.+|+||++ ..++++|+||+|+|.|..|||.+++++++||+||++++. .+..|.++++|||+.+.....
T Consensus 361 ~~R~~l~~es~lp~EP~a~~~~~~~l~iR~P~G~r~~RrF~~s~~~q~l~~~v~~~~~-~~~e~~~~~~fPr~~~~~~~~ 439 (460)
T KOG1363|consen 361 TARQLLALESSLPPEPSASEEEAITVAIRLPSGTRLERRFLKSDKLQILYDYVDSNGF-HPEEYSLNTSFPRRPLGDYEH 439 (460)
T ss_pred HHHHHHhhhccCCCCCCcCcccceeeEEECCCCCeeeeeeecccchhHHHHHHHhccC-CchhhccccCCCccccccccc
Confidence 223566778899999943 578899999999999999999999999999999999994 678999999999999998878
Q ss_pred cCcccccCCCC-CeeEEEEe
Q 012346 446 SLSLKEAGLHP-QASLFVEL 464 (465)
Q Consensus 446 ~~TL~e~gL~p-~~~L~ve~ 464 (465)
..||++.||+| +++|+||.
T Consensus 440 ~~sl~~~~l~p~qe~lflE~ 459 (460)
T KOG1363|consen 440 SSSLQDIGLTPRQETLFLEE 459 (460)
T ss_pred ccccccCCcccccceeeeec
Confidence 99999999999 99999986
No 2
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.97 E-value=5.4e-30 Score=220.78 Aligned_cols=116 Identities=30% Similarity=0.688 Sum_probs=112.2
Q ss_pred ccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 170 f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
||+|||+||++.||++.||||||||+++|+++..||+++|+|++|+++|++|||+|++|++++||+++++.|++++||++
T Consensus 1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL 80 (116)
T ss_pred CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
++|+++. .+|+++.+++|..++++|++.|+.+++++
T Consensus 81 ~~l~~~~-~~~~vv~~i~G~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 81 AMIMLKD-NRMTIVGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred EEEEecC-CceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 9999874 47999999999999999999999998764
No 3
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=99.97 E-value=7e-30 Score=223.93 Aligned_cols=115 Identities=24% Similarity=0.484 Sum_probs=109.4
Q ss_pred ccccCHHHHHHHH----HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchH------------
Q 012346 170 FVSEGFMDALQRS----RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE------------ 233 (465)
Q Consensus 170 f~~gs~~eAl~~A----k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~E------------ 233 (465)
||+|||++|++.| +++.|+|+||||+|+|++|+.||+++|||+.|++||++|||+||||+++++
T Consensus 1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~ 80 (136)
T cd02990 1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRH 80 (136)
T ss_pred CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhh
Confidence 8999999999999 999999999999999999999999999999999999999999999999997
Q ss_pred ----HHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 234 ----GFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 234 ----g~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
++++++.+++.+||+++||++..+ +++|+++++|.+++++++++|..+++-
T Consensus 81 ~g~~a~~~~~~~~~~~fP~~avI~~~~~-~~~vl~~i~G~~~~~ell~~L~~~ve~ 135 (136)
T cd02990 81 FGSVAAQTIRNIKTDQLPAILIIMGKRS-SNEVLNVIQGNTGVDELLMRLIEAMEM 135 (136)
T ss_pred hhHHHHHHHHhcCcCCCCeEEEEEecCC-ceEEEEEEECCCCHHHHHHHHHHHHhc
Confidence 667788899999999999998765 799999999999999999999998864
No 4
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=99.93 E-value=9.5e-25 Score=216.59 Aligned_cols=286 Identities=19% Similarity=0.294 Sum_probs=186.3
Q ss_pred CccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCc
Q 012346 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPF 248 (465)
Q Consensus 169 ~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~ 248 (465)
.||+|++.+|+..||..++.++|||.++ +++++.|.|-+|.+..+.+.+...||....+..+..+.+++..|++...|+
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~gd-dE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs 80 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISGD-DEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPS 80 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEecC-chHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccc
Confidence 4899999999999999999999999985 569999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh----------hcHHHH---------------------------
Q 012346 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE----------SNPALL--------------------------- 291 (465)
Q Consensus 249 i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~----------~~~~L~--------------------------- 291 (465)
+++|+.+ |+.+ ..+.|.+++++|.++|.+++-- ++..+.
T Consensus 81 ~ffIg~s-GtpL---evitg~v~adeL~~~i~Kv~~~~h~~~t~~s~f~~a~a~svs~tPtasae~~~tppps~~~~aav 156 (506)
T KOG2507|consen 81 IFFIGFS-GTPL---EVITGFVTADELASSIEKVWLGLHIQETTASIFSAALASSVSETPTASAESVVTPPPSVPLDAAV 156 (506)
T ss_pred eeeecCC-Ccee---EEeeccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCccccccccCCCCCCCcchhh
Confidence 9999974 7544 4567999999999988765431 111110
Q ss_pred H--------------------------------hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012346 292 Q--------------------------------ARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREA 339 (465)
Q Consensus 292 ~--------------------------------~r~e~~er~~~r~lreeQd~aY~~SL~~D~ek~~~r~ee~e~~~~~~ 339 (465)
+ .|....+-.....+++.+++ -+.++.|+..+++.++...+.+
T Consensus 157 a~ppTada~~p~at~stv~g~sTts~~~~~v~~qrplea~~~rl~~ltk~leq-----kr~Ek~kee~~hekeee~~rr~ 231 (506)
T KOG2507|consen 157 ASPPTADAVQPSATKSTVTGASTTSNNDGTVAVQRPLEAEPSRLCDLTKNLEQ-----KRVEKTKEEVEHEKEEEPLRRQ 231 (506)
T ss_pred cCCCccccCCCCCCCccccccccccCCCCccccccchhhhhhHHHHHHhhccc-----cchhhhHHHHHHHhhhhhHhhh
Confidence 0 00000000000011111110 0111111111111111000000
Q ss_pred --HH---------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC--------CCC-------C-----CC
Q 012346 340 --AE---------AERKHKEEVEAREREAREAAERE---AALAKMRQEKALSLG--------AEP-------E-----KG 385 (465)
Q Consensus 340 --~e---------~e~k~~eeee~~~~~~~e~~~~~---~~~~~~r~~~~~~lp--------~EP-------~-----~~ 385 (465)
+| ++.-++..++.++++.+.++-++ +++.-.|.+.+.++. .+| . ..
T Consensus 232 agkE~~~~~a~~~ee~tkrm~eqrkrer~e~~aareRI~aqiaadraera~rf~k~v~t~et~k~aa~~ae~~~ge~~~~ 311 (506)
T KOG2507|consen 232 AGKEPIRPTAPGTEENTKRMREQRKRERKEGTAARERILAQIAADRAERAIRFTKSVDTKETMKPAAEGAEEEDGEKSKK 311 (506)
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHhhhcCccchhhhcchhhhhccccccccccc
Confidence 00 00000000111111111111111 111111222222221 001 0 11
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
.+.|+|+||||||+.++..|+.++-|..|.+||..........|.|.++||||+|+.+|..+||.|+.|.|+++|+|-+
T Consensus 312 ~d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlp 390 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLP 390 (506)
T ss_pred cceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEe
Confidence 3679999999999999999999999999999999877767789999999999999999999999999999999999853
No 5
>smart00594 UAS UAS domain.
Probab=99.93 E-value=7.9e-26 Score=197.02 Aligned_cols=119 Identities=37% Similarity=0.673 Sum_probs=112.9
Q ss_pred HHHHhhCCCCCCccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHH
Q 012346 158 VFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKM 237 (465)
Q Consensus 158 ~~~~~yg~~~p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~v 237 (465)
.|+++|| |.||+|||++|++.|+++.|+++||+|++.|.+|..|+|+||+|++|+++|++|||+|++|++++||+++
T Consensus 2 ~~~~~~~---~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l 78 (122)
T smart00594 2 LFRPPYG---PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRV 78 (122)
T ss_pred CCCCCCC---CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHH
Confidence 4677888 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCcEEEEecCCCc-ceeeEEeeecCCChHHHHHHH
Q 012346 238 SNSLKASRYPFCAVVMPAANQ-RIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 238 a~~l~~~~~P~i~ii~~~~~~-~~~vl~~i~G~~~~~~~~~~L 279 (465)
++.|++++||++++|++.+|+ .+.++.+++|.+++++|+..|
T Consensus 79 ~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 79 SQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 999999999999999997664 478999999999999999877
No 6
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.3e-26 Score=221.20 Aligned_cols=227 Identities=24% Similarity=0.280 Sum_probs=150.3
Q ss_pred CccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCc
Q 012346 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPF 248 (465)
Q Consensus 169 ~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~ 248 (465)
.+|+|++..|...|.++.+||+| +.++.||.++..+|++.+.|+
T Consensus 114 i~~~gsld~ak~~a~sk~~wllV------------------------------------~~Dtseg~~~~~Fy~~~~~P~ 157 (356)
T KOG1364|consen 114 ILSHGSLDAAKSTASSKQRWLLV------------------------------------LDDTSEGQPFSAFYHISSLPH 157 (356)
T ss_pred hhhcCChhhhhhcccccceEEEE------------------------------------eeccCCCCchhhheeccCCce
Confidence 45999999999999999999999 457788999999999999999
Q ss_pred EEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhhcHHHHHhhHHHH---HHHHHhhhHHHHHHHHH----HHHHHH
Q 012346 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQARLDAE---ERRNNMRLREEQDAAYR----AALEAD 321 (465)
Q Consensus 249 i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~~~L~~~r~e~~---er~~~r~lreeQd~aY~----~SL~~D 321 (465)
++||+|.||++|..|+ |.+.+++|+..|..+|+.....-++..+.-. ..+. --+..+||.+.. .|+-.-
T Consensus 158 i~iiDp~Tge~v~~ws---~vi~~~~fl~~l~~Fi~~~~~d~vas~t~n~~~p~~e~-~~~ss~e~~~~elai~~sv~~~ 233 (356)
T KOG1364|consen 158 IAIIDPITGERVKRWS---GVIEPEQFLSDLNEFIDSCPHDEVASLTRNRKRPKTEP-TCLSSEEDMQMELAIKNSVVNP 233 (356)
T ss_pred EEEECCchhhhhhhhc---cccCHHHHHHHHHHHHhcCCccccccccccccCCCCCc-cccccccchhhhcccccccccC
Confidence 9999999999988886 6778999999999999987654322221100 0000 001112222211 111000
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CCCCeEEEEEECCC
Q 012346 322 -QARERQRREEQERLEREAAEAERKHKEEVEAREREAREAAEREAALAKMRQEKALSLGAEPE---KGPNVTQVLVRFPN 397 (465)
Q Consensus 322 -~ek~~~r~ee~e~~~~~~~e~e~k~~eeee~~~~~~~e~~~~~~~~~~~r~~~~~~lp~EP~---~~~~~~~i~iRlP~ 397 (465)
-.++.+ +.-. -.+++. +.+.+.. .-....+..||. +.+.+|+|+||+||
T Consensus 234 ~~~~e~e-----~~~~---------s~~ee~------------e~~~e~~-~~~~~~a~~ep~~~~~~svvt~i~vR~pd 286 (356)
T KOG1364|consen 234 SSGTEFE-----GQGA---------SDEEEL------------ETVLEED-LFVFPVATVEPKGDCDRSVVTSIQVRFPD 286 (356)
T ss_pred CCccccc-----CCCC---------cccchh------------hcccccc-ccccceeeecCCCCCCccceeEEEEecCC
Confidence 000000 0000 000000 0000000 001111222333 23456889999999
Q ss_pred CceEEEEecCCCcHHHHHHHHHhcC-CCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 398 GERKERRFHSTAVVQLLYDYVDSLG-CLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 398 G~r~~rrF~~~~tl~~l~~fv~~~~-~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
|+|.+|||.++++++-||.|+.++- ......|+|++.||++.....+.+.||+++||+|+.+|+.
T Consensus 287 G~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~~~~ 352 (356)
T KOG1364|consen 287 GRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSETLLS 352 (356)
T ss_pred ccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCccccccc
Confidence 9999999999999999999998764 2346789999999988877777899999999999887554
No 7
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.88 E-value=6.3e-22 Score=170.19 Aligned_cols=113 Identities=35% Similarity=0.566 Sum_probs=107.2
Q ss_pred ccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 170 f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
||.|+|++|++.|+++.|||+||+|++.+..|+.|++++|+|+.|+++|+++||+|.+|++++||.+++..|++..+|++
T Consensus 1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI 80 (114)
T ss_pred CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
++|++.+| +++.++.|..++++|++.|+.++..
T Consensus 81 ~~i~~~~g---~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 81 AIIDPRTG---EVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred EEEeCccC---cEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 99998545 4677899999999999999988764
No 8
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.87 E-value=4.6e-22 Score=158.98 Aligned_cols=78 Identities=31% Similarity=0.562 Sum_probs=73.6
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
.+.|+|+||||||+|++|||..+++|++||+||++.+. .+.+|+|+|+||||+|++++.++||+|+||+|+++|+||.
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~g~-~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQSKGY-PNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCC-CCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 35899999999999999999999999999999999876 6789999999999999998889999999999999999984
No 9
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.87 E-value=5.3e-22 Score=159.30 Aligned_cols=78 Identities=32% Similarity=0.522 Sum_probs=72.7
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
.++++|+||||||+|++|||+.+++|++||+||++.++ ++.+|+|+++||||+|+..+.+.||+|+||+|+++|+||+
T Consensus 2 ~~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~~~-~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Vee 79 (80)
T cd01771 2 EPISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASKGY-PIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEE 79 (80)
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCC-CCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEc
Confidence 46899999999999999999999999999999999876 4679999999999999876778999999999999999986
No 10
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.84 E-value=8.3e-21 Score=154.15 Aligned_cols=77 Identities=36% Similarity=0.624 Sum_probs=71.1
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCC-----CCccCcccccCCCCCeeE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYST-----DKFSLSLKEAGLHPQASL 460 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~-----~~~~~TL~e~gL~p~~~L 460 (465)
+++|+|+||||||+|++|||+.++||++||+||.+.+. .+.+|+|+++||||++++ .+.+.||+|+||+|+++|
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~~~-~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L 80 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSLKE-TPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL 80 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhCCC-CCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence 57899999999999999999999999999999998776 568999999999999984 356889999999999999
Q ss_pred EEE
Q 012346 461 FVE 463 (465)
Q Consensus 461 ~ve 463 (465)
+|+
T Consensus 81 ~V~ 83 (85)
T cd01774 81 FVQ 83 (85)
T ss_pred EEe
Confidence 998
No 11
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.83 E-value=2.9e-20 Score=149.37 Aligned_cols=77 Identities=25% Similarity=0.430 Sum_probs=71.6
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.+.|+|+||||||++++++|+.++||++||+||+++.. ...+|.|+++||||+|+.++.++||+|+||+|+++|+|+
T Consensus 2 ~~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~-~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 2 YTETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG-NGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred CcEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC-CCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 35799999999999999999999999999999998875 347899999999999998778999999999999999997
No 12
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=99.82 E-value=5.7e-20 Score=148.15 Aligned_cols=78 Identities=29% Similarity=0.552 Sum_probs=71.5
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
+.|+|+||||||+|++++|+.++||++||+||......+..+|+|+++|||+.|+.++.++||+|+||+|+++|+|+.
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~~ 80 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLEP 80 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEeC
Confidence 689999999999999999999999999999997655545678999999999999987778999999999999999984
No 13
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=99.77 E-value=8.8e-19 Score=141.83 Aligned_cols=78 Identities=38% Similarity=0.669 Sum_probs=71.0
Q ss_pred CCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcC-eEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 385 GPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQN-YSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 385 ~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~-f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+.+.|+|+||||||++++|+|..++||++||+||++........ |.|+++|||+.+..++ ++||+|+||.|+++|+|+
T Consensus 3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~-~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDED-SKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTT-TSBTCCCTTSSCEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccc-cccHHHhcCCCCeEEEEE
Confidence 35789999999999999999999999999999999887544444 9999999999999876 899999999999999997
No 14
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=99.77 E-value=1.4e-18 Score=138.96 Aligned_cols=74 Identities=34% Similarity=0.597 Sum_probs=66.8
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
+|+|+||||||++++++|+.++||++||+||+++... ..+|+|+++|||+.|..++.++||+|+||.|+++++.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEEEE
Confidence 6899999999999999999999999999999998763 6789999999999998866799999999997655544
No 15
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=99.71 E-value=3.7e-17 Score=131.08 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=64.3
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCC-CCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGC-LEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~-~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
++|+|+||||||+|+++||+.++||++||+||.++.. ....+|.|+++||++.|..+ ++||+|+||.| +++++.
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~--~~Tl~eagL~~-s~v~q~ 77 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDE--SLTLKEANLLN-AVIVQR 77 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCC--CCcHHHCCCcC-cEEEEE
Confidence 4799999999999999999999999999999998753 23578999999999999854 88999999996 555543
No 16
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.7e-15 Score=143.90 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=73.7
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
+.|+||||||||..+...|++..+|..|..||+.....++.+|.|.++|||++|+.+|+.++|+++||.|+++|++++
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~~ 286 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILEP 286 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheeccc
Confidence 679999999999999999999999999999999988766679999999999999999999999999999999999874
No 17
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.09 E-value=7.6e-11 Score=83.34 Aligned_cols=41 Identities=34% Similarity=0.724 Sum_probs=34.9
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
+++|.+|++|||+++ +.|+++|++++|||+.||..||+.++
T Consensus 1 ~e~i~~F~~iTg~~~-~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 1 DEKIAQFMSITGADE-DVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHHH-SSH-HHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred CHHHHHHHHHHCcCH-HHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 589999999999854 99999999999999999999998654
No 18
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.03 E-value=1.3e-09 Score=87.98 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=70.7
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
..+|++|+..|++++|++||+++++.+..|..|.+.++.++.|.++++++||++.+|+++.++...... ..+|+++|
T Consensus 3 ~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~~ 79 (82)
T PF13899_consen 3 QSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFFF 79 (82)
T ss_dssp ESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEEE
T ss_pred hhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEEE
Confidence 358999999999999999999999999999999999999999999999999999999988776432212 45999999
Q ss_pred Eec
Q 012346 252 VMP 254 (465)
Q Consensus 252 i~~ 254 (465)
++|
T Consensus 80 ldp 82 (82)
T PF13899_consen 80 LDP 82 (82)
T ss_dssp EET
T ss_pred eCC
Confidence 875
No 19
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=98.91 E-value=1.5e-09 Score=108.81 Aligned_cols=72 Identities=26% Similarity=0.383 Sum_probs=62.5
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCC-CCcCeEEEeCCCCcccCCCCccCcccccCCCCCee
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCL-EVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQAS 459 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~-~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~ 459 (465)
.+++.|||||+||+|++-+|+.++||.+||.||+..... ....|.|+++||.|.|.++ ++||+++||.+..+
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~--sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDD--SQTLEEAGLLNSVL 375 (380)
T ss_pred CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCc--chhHHhccchhhhh
Confidence 457899999999999999999999999999999987642 2347999999999999863 89999999995443
No 20
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.63 E-value=4.5e-07 Score=78.75 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcC-cEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCch-----------HHHHHHHhCC
Q 012346 175 FMDALQRSRSVF-KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS-----------EGFKMSNSLK 242 (465)
Q Consensus 175 ~~eAl~~Ak~e~-K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~-----------Eg~~va~~l~ 242 (465)
+-++++.|++++ |++||+++++.+..|+.+...++.++.+.+.++++|++...++++. ....++..|+
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 568899999999 9999999999999999999889888999999988999999988754 2457788999
Q ss_pred CCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 243 ~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
+..+|+++++.+..| .++.++.|..+.+.|...|..+++++
T Consensus 82 v~~~Pt~~~~~~~gg---~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 82 VRFTPTVIFLDPEGG---KEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred CccccEEEEEcCCCC---ceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 999999999997313 35678889999999988888877653
No 21
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.60 E-value=2.7e-07 Score=80.83 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=72.9
Q ss_pred CCccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCC
Q 012346 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYP 247 (465)
Q Consensus 168 p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P 247 (465)
..| ..+|++|+..|+++.|++||++|++.+..|..+-+.++.+++|.++++++||....+++..+.. .+ .....+|
T Consensus 6 i~W-~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~-~~--~~g~~vP 81 (130)
T cd02960 6 IIW-VQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN-LS--PDGQYVP 81 (130)
T ss_pred ccc-hhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC-cC--ccCcccC
Confidence 344 3389999999999999999999999999999999999999999999999998655554322200 00 0224689
Q ss_pred cEEEEecCCCcceeeEEeeecCC
Q 012346 248 FCAVVMPAANQRIALLQQVEGPK 270 (465)
Q Consensus 248 ~i~ii~~~~~~~~~vl~~i~G~~ 270 (465)
.++++++. | +++.++.|..
T Consensus 82 tivFld~~-g---~vi~~i~Gy~ 100 (130)
T cd02960 82 RIMFVDPS-L---TVRADITGRY 100 (130)
T ss_pred eEEEECCC-C---CCcccccccc
Confidence 99999984 3 4566666743
No 22
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.50 E-value=1.9e-06 Score=75.16 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchH-HHH-H---H-HhCCCCCCCcE
Q 012346 176 MDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE-GFK-M---S-NSLKASRYPFC 249 (465)
Q Consensus 176 ~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~E-g~~-v---a-~~l~~~~~P~i 249 (465)
++|++.|+++.|++||+++.+.+..|..+-+.++.+++|.++|+++||+...|++... -.+ + + ..|++..+|++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 5789999999999999999999999999999999999999999999999999987532 211 1 1 14688899999
Q ss_pred EEEecCCCc
Q 012346 250 AVVMPAANQ 258 (465)
Q Consensus 250 ~ii~~~~~~ 258 (465)
+++.+. |.
T Consensus 85 vfl~~~-G~ 92 (124)
T cd02955 85 VFLTPD-LK 92 (124)
T ss_pred EEECCC-CC
Confidence 999984 53
No 23
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.29 E-value=4.9e-06 Score=69.73 Aligned_cols=100 Identities=14% Similarity=0.057 Sum_probs=82.5
Q ss_pred HHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCch--HHHHHHHhCCCCCCCcEEEEec
Q 012346 177 DALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS--EGFKMSNSLKASRYPFCAVVMP 254 (465)
Q Consensus 177 eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~--Eg~~va~~l~~~~~P~i~ii~~ 254 (465)
+++..|.+++|++||+++.+.+..|..+...++.++.+.+.+++++++...|++.. ....+++.|++.++|.+.++.+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 46777889999999999999999999998888888999999988888888887643 2567889999999999999985
Q ss_pred CCCcceeeEEeeecCCChHHHHHHH
Q 012346 255 AANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 255 ~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
-.|. ++.++.|..+.++|.+.|
T Consensus 82 ~~g~---~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 GGEP---EPLRLPGFLTADEFLEAL 103 (104)
T ss_pred CCCC---CCcccccccCHHHHHHHh
Confidence 1232 456778999998887765
No 24
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.1e-05 Score=71.68 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHH--------------HHHHHh
Q 012346 175 FMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--------------FKMSNS 240 (465)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg--------------~~va~~ 240 (465)
.-++.+.|.-+.|+||+.+-++++.-|+.|.+++...+.+.++|..||.++-.++.+.+. ..+|+.
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 345667788899999999999999999999999999999999999999999888776542 367899
Q ss_pred CCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 241 l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
|+++++|++.+.+.. |. .+..+.|.++|++|+.-|.-+
T Consensus 111 f~vrstPtfvFfdk~-Gk---~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 111 FAVRSTPTFVFFDKT-GK---TILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred hccccCceEEEEcCC-CC---EEEecCCCCCHHHHHHHHHHH
Confidence 999999999999974 53 467899999999999877543
No 25
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.07 E-value=3.4e-06 Score=71.43 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=73.4
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchH------------------HHHHHHhCCC
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE------------------GFKMSNSLKA 243 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~E------------------g~~va~~l~~ 243 (465)
|+.++|..+|+++++.+..|..+-..++.++++...++.++.+...++.+.. ...+++.|++
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 5788999999999999999999999999888888888888888888877654 1357788999
Q ss_pred CCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 244 SRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 244 ~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
..+|++++++.. |. ++.++.|..++++|...|
T Consensus 81 ~gtPt~~~~d~~-G~---~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKD-GK---IVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTT-SC---EEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCC-CC---EEEEecCCCCHHHHHhhC
Confidence 999999999853 53 567788999999998865
No 26
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.86 E-value=0.00015 Score=65.93 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=62.2
Q ss_pred HhhCCCCCCccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHH----HH
Q 012346 161 RDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG----FK 236 (465)
Q Consensus 161 ~~yg~~~p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg----~~ 236 (465)
.++......|+. -..+|++.|+++.|+++|.+..+.+.=|+.+-++++.|++|.++||++||-..+|...... |+
T Consensus 13 ~~ha~~~V~W~~-w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~ 91 (163)
T PF03190_consen 13 RQHAHNPVNWQP-WGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYM 91 (163)
T ss_dssp HTTTTSSS--B--SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHH
T ss_pred HHhccCCCCccc-CCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHH
Confidence 444444335542 3369999999999999999999888778888899999999999999999999999876332 11
Q ss_pred -HHH-hCCCCCCCcEEEEecC
Q 012346 237 -MSN-SLKASRYPFCAVVMPA 255 (465)
Q Consensus 237 -va~-~l~~~~~P~i~ii~~~ 255 (465)
+++ ..+...+|..+++.|.
T Consensus 92 ~~~~~~~~~gGwPl~vfltPd 112 (163)
T PF03190_consen 92 NAVQAMSGSGGWPLTVFLTPD 112 (163)
T ss_dssp HHHHHHHS---SSEEEEE-TT
T ss_pred HHHHHhcCCCCCCceEEECCC
Confidence 111 1267899999999983
No 27
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.84 E-value=9.1e-05 Score=80.84 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=90.2
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCc--hHHHHHHHhCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA--SEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~--~Eg~~va~~l~~~~~P~i~ 250 (465)
.+++++++.|+.++|+++|+++.+.+..|+.+-+.++.+++|.+.++ ++++...|+++ ++...+++.|++..+|++.
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 45789999999999999999999999999999999999999999886 68888889875 3566788999999999999
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
++++. |+.+ ...++.|..++++|.+.|+++
T Consensus 540 ~~~~~-G~~i-~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 540 FFDAQ-GQEI-PDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EECCC-CCCc-ccccccCCCCHHHHHHHHHHh
Confidence 99863 4321 136788999999999888753
No 28
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.65 E-value=0.00011 Score=63.30 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=76.3
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCC--CCcEEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASR--YPFCAV 251 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~--~P~i~i 251 (465)
+|++|++.|+.+.|++||+++.+.+..|..+...+...+.+.. ++.+|+....+... +. ....|+... +|++++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~-~~--~~~~~~~~g~~vPt~~f 82 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDE-EP--KDEEFSPDGGYIPRILF 82 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCC-Cc--hhhhcccCCCccceEEE
Confidence 6999999999999999999999999999999887666666555 56688877665432 22 123566654 999999
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
+.+. |..+..+....|....+.|.+.|..+++
T Consensus 83 ~~~~-Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 83 LDPS-GDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred ECCC-CCCchhhccCCCCccccccCCCHHHHHh
Confidence 9874 5433333455566677777666665543
No 29
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.35 E-value=0.0016 Score=58.05 Aligned_cols=100 Identities=8% Similarity=-0.052 Sum_probs=73.7
Q ss_pred HHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcc
Q 012346 180 QRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQR 259 (465)
Q Consensus 180 ~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~ 259 (465)
+.|...+|.++|+++.+.+..|..+...+- .+.+-....+-|..++++..+...++..|++..+|.++++... |
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~---~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~-G-- 87 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVA---KLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE-G-- 87 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHH---HHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC-C--
Confidence 445578999999999999888877654221 2333333445566777776655577889999999999999752 4
Q ss_pred eeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 260 IALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 260 ~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.++.++.|..+.++|...|...+...
T Consensus 88 -~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 -NEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred -CEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 36778889999999988888887654
No 30
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.28 E-value=0.00064 Score=54.62 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=44.6
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
..-|+||.|+|...+ ....++|+.+||+-|......+...|.|..+.+...--..+.++||.++||.++.+|++.+
T Consensus 4 ~milRvrS~dG~~Ri-e~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~~ 79 (80)
T PF11543_consen 4 SMILRVRSKDGMKRI-EVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLKP 79 (80)
T ss_dssp --EEEEE-SSEEEEE-EE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE---
T ss_pred cEEEEEECCCCCEEE-EcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEec
Confidence 457999999996333 5789999999999999877666678888777554433222358999999999999999864
No 31
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=97.00 E-value=0.0033 Score=49.30 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=58.8
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|.||..+|+.+..++..++|+.+|...+......++....|+ |..+.+.+ +.||.+.|+.++.+|++-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~--~~g~~L~d---~~tl~~~~i~~g~~i~l~ 70 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI--YSGKQMND---DKTAADYKLEGGSVLHLV 70 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE--ECCeEccC---CCCHHHcCCCCCCEEEEE
Confidence 5889999999999999999999999999988766667778887 56777753 579999999999999874
No 32
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.84 E-value=0.018 Score=47.43 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=68.5
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii 252 (465)
|||.=.-..++ ..|+.+|++.++.+..|..+...+ +++.+-++.++.+...|+++.. .++..+++..+|++.++
T Consensus 1 ~~~~~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~~--~l~~~~~v~~vPt~~i~ 74 (97)
T cd02949 1 GSYALRKLYHE-SDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDEDQ--EIAEAAGIMGTPTVQFF 74 (97)
T ss_pred CchhHHHHHHh-CCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCCH--HHHHHCCCeeccEEEEE
Confidence 44543333344 889999999999988887776433 3455555556777777776433 46788999999999999
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
.. | .++.++.|..+.+++.+.|
T Consensus 75 ~~--g---~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 75 KD--K---ELVKEISGVKMKSEYREFI 96 (97)
T ss_pred EC--C---eEEEEEeCCccHHHHHHhh
Confidence 53 5 3578899988888877654
No 33
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=96.81 E-value=0.0049 Score=48.50 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=59.1
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|.||.++|+.+.-....++|+.+|.+-|......+.....|+ |-.+.+.+ +.||.+.|+.++++|++-
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~--~~G~~L~d---~~~L~~~~i~~~~~l~l~ 70 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL--FKGKALAD---DKRLSDYSIGPNAKLNLV 70 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE--ECCEECCC---CCCHHHCCCCCCCEEEEE
Confidence 6889999999988899999999999999988776677788887 55677753 579999999999999764
No 34
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.78 E-value=0.0069 Score=48.50 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=60.0
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..|.||..+|+.+...+..++|+.+|..-|......+.....|...|..+.+.+ +.||.+.|+.++++|.|-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D---~~tL~~~gi~~gs~l~l~ 74 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQD---GVPLVSQGLGPGSTVLLV 74 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCC---CCCHHHcCCCCCCEEEEE
Confidence 578899999999999999999999999999877555677888865676677753 569999999999998764
No 35
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=96.76 E-value=0.0081 Score=47.35 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=58.6
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
++|.||-..|+.+...+..++||.+|.+-|......++..-.|+ |..+.+.+ +.||++.|+.++.++++-
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi--~~Gk~L~D---~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK--KWYTIFKD---HISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE--eCCcCCCC---CCCHHHcCCCCCCEEEEE
Confidence 57889999999999999999999999999987654567777887 55666653 569999999999999874
No 36
>PRK10996 thioredoxin 2; Provisional
Probab=96.74 E-value=0.021 Score=50.60 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=68.6
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCC
Q 012346 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAAN 257 (465)
Q Consensus 178 Al~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~ 257 (465)
.++...++.|+.+|+++.+.+..|..+.. +| ..+.+-.+.++.+...|+++.. .++..|++..+|.+.++. .|
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~~--~l~~~~~V~~~Ptlii~~--~G 116 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAER--ELSARFRIRSIPTIMIFK--NG 116 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCCH--HHHHhcCCCccCEEEEEE--CC
Confidence 34444566899999999999888887754 33 2344445557777777776543 568899999999988775 35
Q ss_pred cceeeEEeeecCCChHHHHHHHHHH
Q 012346 258 QRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 258 ~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
. ++.++.|..+.+.+.+.|..+
T Consensus 117 ~---~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 117 Q---VVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred E---EEEEEcCCCCHHHHHHHHHHh
Confidence 3 567888998888888877654
No 37
>PTZ00044 ubiquitin; Provisional
Probab=96.69 E-value=0.0069 Score=47.70 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=59.5
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.|-||.++|+.+.-++..++||.+|..-|......+.....|+ |-.+.+.+ +.||.+.|+.++.+|.+-
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~--~~g~~L~d---~~~l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI--YSGKQMSD---DLKLSDYKVVPGSTIHMV 70 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE--ECCEEccC---CCcHHHcCCCCCCEEEEE
Confidence 4789999999999999999999999999998776677788888 66777753 568999999999998874
No 38
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=96.64 E-value=0.0063 Score=47.54 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=57.7
Q ss_pred EEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 391 VLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 391 i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
+.||+++|+.+.-.+..++||.+|...|......+.....|+ |-.+.+.+ +.||.+.|+.++.++.|-.
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li--~~G~~L~D---~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF--FSGKLLTD---KTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE--ECCeECCC---CCCHHHcCCCCCCEEEEEe
Confidence 468999999999999999999999999988766667777886 55667653 6799999999999988743
No 39
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=96.62 E-value=0.016 Score=47.38 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=69.2
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii 252 (465)
-+|++.+.. ..++.+|+++.+.+..|..+...+ ..+.+....++.++..|.+ +...+++.|++..+|.+.++
T Consensus 7 ~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 7 ENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPIL---EKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp TTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHH---HHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEE
T ss_pred HHHHHHHHc---cCCCEEEEEeCCCCCcccccccee---cccccccccccccchhhhh--ccchhhhccCCCCCCEEEEE
Confidence 345555554 479999999999888887775322 2333444447888888876 34667899999999999988
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
.. |. ...++.|..+.+++.+.|.+
T Consensus 79 ~~--g~---~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 79 KN--GK---EVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp ET--TE---EEEEEESSSSHHHHHHHHHH
T ss_pred EC--Cc---EEEEEECCCCHHHHHHHHHc
Confidence 75 43 34488899999988887753
No 40
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.53 E-value=0.017 Score=47.64 Aligned_cols=88 Identities=11% Similarity=0.086 Sum_probs=62.2
Q ss_pred HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 183 k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
.++.++++|+++++.+..|..+...+ ..+.+.+. ..+++...|++..+...+++.|++..||++.++-. |.
T Consensus 14 ~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~--g~-- 86 (104)
T cd02997 14 LKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFEN--GK-- 86 (104)
T ss_pred HhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeC--CC--
Confidence 34567999999999887777775443 24444454 35677777877655667788999999999776653 43
Q ss_pred eeEEeeecCCChHHHHHH
Q 012346 261 ALLQQVEGPKSPEEMLMI 278 (465)
Q Consensus 261 ~vl~~i~G~~~~~~~~~~ 278 (465)
++.+..|..+.+.++..
T Consensus 87 -~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 87 -FVEKYEGERTAEDIIEF 103 (104)
T ss_pred -eeEEeCCCCCHHHHHhh
Confidence 35677788888887653
No 41
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=96.49 E-value=0.01 Score=45.96 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=57.0
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.+|.||.++|+.+...+..++|+.+|..-+......++....|+- ..+.+.+ +.||.+.|+.++..|++-
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~--~g~~L~d---~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY--SGRVLKD---DETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE--CCEECCC---cCcHHHCCCCCCCEEEEE
Confidence 368899999999999999999999999999876555556677764 4555542 679999999999998874
No 42
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.47 E-value=0.032 Score=45.48 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=66.4
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
+|++.+.. ...++++|+++.+.+..|..+...+ +.+.+.+...+.+...|++.. ..+++.|++..+|.++++.
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDAQ--PQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccCC--HHHHHHcCCCCCCEEEEEe
Confidence 35555543 3478999999999998888876432 344444445666777776653 3578899999999999996
Q ss_pred cCCCcceeeEEeeecCCChHHHHHHH
Q 012346 254 PAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
. | .++.+..|..+.+++...|
T Consensus 75 ~--g---~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 75 A--G---QPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred C--C---EEeeeecCCCCHHHHHHHh
Confidence 3 5 2456788988888776654
No 43
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=96.39 E-value=0.011 Score=45.87 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=57.5
Q ss_pred EEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 391 VLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 391 i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
|-||.++|..+.-....++|+.+|...+......+.....|+ |-.+.+.+ +.||.+.|+.++++|++-
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li--~~G~~L~d---~~~l~~~~i~~~stl~l~ 68 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI--FAGKELRN---TTTIQECDLGQQSILHAV 68 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE--ECCeECCC---CCcHHHcCCCCCCEEEEE
Confidence 458999999999999999999999999998876667788886 55677743 579999999999999873
No 44
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=96.35 E-value=0.015 Score=45.48 Aligned_cols=69 Identities=10% Similarity=0.200 Sum_probs=57.8
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.|.||.++|+.+.-.+..++||.+|..-|......+.....|. |..+.+.+ +.||.+.|+.++++|.|-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~--~~g~~L~d---~~~L~~~~i~~~~~i~l~ 70 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQKESTLHLV 70 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE--ECCEECCC---CCcHHHcCCCCCCEEEEE
Confidence 4789999999999999999999999999988765566677776 55666653 579999999999988875
No 45
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=96.30 E-value=0.018 Score=44.56 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=57.4
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEeC
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVELN 465 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~~ 465 (465)
++|.||.. |+....++..++|+.+|..-+......++....|.-. .+.+. .+.||.++|+.++..|+|..|
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~--g~~l~---d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK--GKERD---DAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC--CcccC---ccCcHHHcCCCCCCEEEEecC
Confidence 46888986 8888899999999999999998876666777888744 44553 267999999999999998654
No 46
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.29 E-value=0.061 Score=43.65 Aligned_cols=89 Identities=11% Similarity=0.028 Sum_probs=62.6
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeE
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl 263 (465)
...+.++|+++++.+..|..+...+ ..+.+-++.++.++..|.+... .+++.|++..+|.+.++.. |. ++
T Consensus 12 ~~~~~vvi~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~P~~~~~~~--g~---~~ 81 (101)
T TIGR01068 12 SSDKPVLVDFWAPWCGPCKMIAPIL---EELAKEYEGKVKFVKLNVDENP--DIAAKYGIRSIPTLLLFKN--GK---EV 81 (101)
T ss_pred hcCCcEEEEEECCCCHHHHHhCHHH---HHHHHHhcCCeEEEEEECCCCH--HHHHHcCCCcCCEEEEEeC--Cc---Ee
Confidence 4567999999998887777665322 2344344556888888876554 3567899999999998842 42 35
Q ss_pred EeeecCCChHHHHHHHHHH
Q 012346 264 QQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 264 ~~i~G~~~~~~~~~~L~~~ 282 (465)
.+..|..+.+++...|+..
T Consensus 82 ~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 82 DRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 6677888888887777653
No 47
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=96.28 E-value=0.0052 Score=44.93 Aligned_cols=42 Identities=21% Similarity=0.467 Sum_probs=35.4
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~~ 47 (465)
++.|.+|...||..- +=|...|+.++||++.|+..|..-...
T Consensus 1 q~mv~~~s~~Tgmn~-~~s~~CL~~n~Wd~~~A~~~F~~l~~~ 42 (51)
T PF03943_consen 1 QEMVQQFSQQTGMNL-EWSQKCLEENNWDYERALQNFEELKAQ 42 (51)
T ss_dssp HHHHHHHHHHCSS-C-CHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred CHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 478999999999877 789999999999999999999775543
No 48
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=96.27 E-value=0.019 Score=45.74 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=56.7
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.+|.||..+|+...-.+..++|+.+|..-|.....+......|+ |..+.+. | + ||.+.|+.++++|++-
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~--~~Gk~L~--d-~-~L~~~gi~~~~~i~l~ 70 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL--HRETRLS--S-G-KLQDLGLGDGSKLTLV 70 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE--ECCcCCC--C-C-cHHHcCCCCCCEEEEE
Confidence 46889999999999999999999999999987654556677776 6666664 2 4 8999999999998874
No 49
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.11 E-value=0.04 Score=45.00 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=62.9
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
+|++++ .+.+.++|+++++.+..|..+. ..| +.+.+-+.. ++.+...| ..+...++..|++..+|.+++
T Consensus 5 ~~~~~~----~~~~~~~i~f~~~~C~~c~~~~-~~~--~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 5 NFDDIV----LSNKDVLVEFYAPWCGHCKNLA-PEY--EKLAKELKGDPDIVLAKVD--ATAEKDLASRFGVSGFPTIKF 75 (102)
T ss_pred hHHHHh----ccCCcEEEEEECCCCHHHHhhC-hHH--HHHHHHhccCCceEEEEEE--ccchHHHHHhCCCCcCCEEEE
Confidence 455554 3799999999999887777764 233 234444444 34444344 344567788999999999999
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
+.. |.. +....|..+.+++...|.+
T Consensus 76 ~~~--~~~---~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 76 FPK--GKK---PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred ecC--CCc---ceeecCCCCHHHHHHHHHh
Confidence 986 322 3456788888887666543
No 50
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=96.09 E-value=0.029 Score=44.20 Aligned_cols=69 Identities=9% Similarity=0.106 Sum_probs=56.2
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCC--CCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCL--EVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~--~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|.||.++|+.+.-....++|+.+|...+...... +.....|+ |..+.+.+ +.||.++|+..+.+|++-
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~--~~G~~L~d---~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI--YSGKILKD---DTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE--ECCEEccC---CCCHHHcCCCCCCEEEEE
Confidence 57899999999989999999999999999876544 55667776 55777753 579999999998887763
No 51
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.08 E-value=0.02 Score=45.01 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=57.4
Q ss_pred EEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 391 VLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 391 i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
|-||.++|+.+.-....++||.+|..-|......+...+.|+ |-.+.+.+ +.||.+.|+.++.+|.+-
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~D---~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS--FEGRPMED---EHPLGEYGLKPGCTVFMN 68 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE--ECCEECCC---CCCHHHcCCCCCCEEEEE
Confidence 468999999999999999999999999987766667788887 55777753 579999999999999774
No 52
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=96.00 E-value=0.071 Score=48.94 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=65.1
Q ss_pred HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchH--H-------------------HHHHHhC
Q 012346 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE--G-------------------FKMSNSL 241 (465)
Q Consensus 183 k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~E--g-------------------~~va~~l 241 (465)
...+|+++|++..+.+..|..+. +.+.++-+.++.+++.++++.. . ..+++.|
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~ 133 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDL 133 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhc
Confidence 34579999999988877776653 3445555556777776654321 1 1345567
Q ss_pred CCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 242 KASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 242 ~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
++..+|+.++|++. | +++.+..|..+.+++.+.|+.++.
T Consensus 134 ~v~~~P~~~~id~~-G---~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 134 GVYGAPETFLVDGN-G---VILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeeCCeEEEEcCC-c---eEEEEEeccCCHHHHHHHHHHHhh
Confidence 88889999999874 5 367778899999999998888764
No 53
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=95.96 E-value=0.024 Score=44.30 Aligned_cols=69 Identities=6% Similarity=-0.029 Sum_probs=56.9
Q ss_pred EEEECC-CCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 391 VLVRFP-NGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 391 i~iRlP-~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
|.||++ +|+.+.-....++||.+|...|......+.....|+- -.+.+.+ ...+|+++|+.++.+|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~--~Gk~L~D--~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY--NGRELVD--NKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE--CCeEccC--CcccHHHcCCCCCCEEEEe
Confidence 458999 9998999999999999999999887766677788874 4666743 2578999999999999874
No 54
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.96 E-value=0.076 Score=52.10 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=69.0
Q ss_pred CcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCch--HH-------HHHHHhCCCCCCCcEEEEecC
Q 012346 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS--EG-------FKMSNSLKASRYPFCAVVMPA 255 (465)
Q Consensus 186 ~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~--Eg-------~~va~~l~~~~~P~i~ii~~~ 255 (465)
.+|-|||+..+++.-|+.|. +-|..|-+. ++-+.+++++.. .+ -..++.++++.+|.+++|.+.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~a------pil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMA------PVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred hceeEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 35889999988877777664 455566655 677777777643 11 345788999999999999997
Q ss_pred CCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 256 ANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 256 ~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
++ .+..++. |.++.++|++++..+...+
T Consensus 224 t~-~~~pv~~--G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 224 SQ-KMSPLAY--GFISQDELKERILNVLTQF 251 (256)
T ss_pred CC-cEEEEee--ccCCHHHHHHHHHHHHhcc
Confidence 66 4555554 9999999999998887766
No 55
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=95.91 E-value=0.055 Score=43.55 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=62.4
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHh--hccceEeecccCchHHHHHHHhCCCCCCCcEEEEecC
Q 012346 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV--NENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPA 255 (465)
Q Consensus 178 Al~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l--~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~ 255 (465)
.+..+.++.+..+|++.++.+..|..+...+ ..+.+-+ +.++.+...+.+. ...++..|++..+|.+.++.+.
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEY---EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHH---HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCC
Confidence 3445555666899999998877777765432 2444455 3566666666544 5567889999999999999863
Q ss_pred CCcceeeEEeeecCCChHHHHHH
Q 012346 256 ANQRIALLQQVEGPKSPEEMLMI 278 (465)
Q Consensus 256 ~~~~~~vl~~i~G~~~~~~~~~~ 278 (465)
+ ..+.+..|..+++++.+.
T Consensus 82 -~---~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 82 -S---KEPVKYEGPRTLESLVEF 100 (101)
T ss_pred -C---cccccCCCCcCHHHHHhh
Confidence 2 245566677788877653
No 56
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.86 E-value=0.091 Score=41.25 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=58.1
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCccee
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~ 261 (465)
.+.+.++|++.++.+..|..+.. .+.++.+ .++.+...+.+. .-.++..|++..+|.+.++.. |.
T Consensus 8 ~~~~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~--g~--- 74 (93)
T cd02947 8 KSAKPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKN--GK--- 74 (93)
T ss_pred hcCCcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEEC--CE---
Confidence 33489999999998877776653 3333333 577777777665 334677899999999998864 42
Q ss_pred eEEeeecCCChHHHHHHH
Q 012346 262 LLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 262 vl~~i~G~~~~~~~~~~L 279 (465)
++..+.|..+.+.+...|
T Consensus 75 ~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 75 EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEecCCCHHHHHHHh
Confidence 466777887777776544
No 57
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=95.85 E-value=0.04 Score=42.35 Aligned_cols=65 Identities=9% Similarity=0.073 Sum_probs=55.1
Q ss_pred ECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 394 RFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 394 RlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
|.++|+.+.-.+..++||.+|..-|......++....|+- -.+.+. .+.||.+.|+.+++++++-
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~--~G~~L~---d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY--NGKELD---DDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE--TTEEES---TTSBTGGGTTSTTEEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeee--eeeccc---CcCcHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999987766778888875 466673 3789999999999988874
No 58
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.78 E-value=0.061 Score=44.79 Aligned_cols=102 Identities=9% Similarity=0.072 Sum_probs=66.8
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
..+|.+.+. +..+..+|+++++.+..|..+...+ ..+.+-++..+.+...+++..+...+++.|++..||.+.+
T Consensus 7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~---~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEY---AKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHH---HHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 345665554 4578899999999887777665321 1334444445667777777655667888999999999999
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
+.......-.+.....|..+.+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHHHh
Confidence 9863100011234556888888776543
No 59
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.77 E-value=0.016 Score=39.30 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=30.3
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHh
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAIS 39 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~ 39 (465)
.+++|.+.+++ |++. +.|+..|..++||++.|+.
T Consensus 2 ~~~~v~~L~~m-Gf~~-~~~~~AL~~~~~nve~A~~ 35 (37)
T PF00627_consen 2 DEEKVQQLMEM-GFSR-EQAREALRACNGNVERAVD 35 (37)
T ss_dssp HHHHHHHHHHH-TS-H-HHHHHHHHHTTTSHHHHHH
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHH
Confidence 46889999999 9988 7999999999999999986
No 60
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=95.75 E-value=0.016 Score=44.25 Aligned_cols=39 Identities=28% Similarity=0.547 Sum_probs=36.1
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~ 43 (465)
+.++|.+|...||... +=|...|+.++||++.|+..|-.
T Consensus 12 q~~~v~~~~~~Tgmn~-~~s~~cLe~~~Wd~~~Al~~F~~ 50 (63)
T smart00804 12 QQEMVQAFSAQTGMNA-EYSQMCLEDNNWDYERALKNFTE 50 (63)
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 6789999999999776 78999999999999999999966
No 61
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.71 E-value=0.2 Score=41.74 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchH-HHHHHHhCCCCCCCcEEE
Q 012346 175 FMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASE-GFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~E-g~~va~~l~~~~~P~i~i 251 (465)
|++++..+ .+|+++|++..+.+..|..+. |.+.++-+ .++.|...|++..+ ...+++.|++..+|++.+
T Consensus 6 ~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 6 LDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred HHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 55555443 489999999999888887764 34444333 36778888876543 457899999999999777
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
+. .| .++.++.|. .+.++.+.+
T Consensus 78 ~~--~G---~~v~~~~G~-~~~~l~~~~ 99 (103)
T cd02985 78 YK--DG---EKIHEEEGI-GPDELIGDV 99 (103)
T ss_pred Ee--CC---eEEEEEeCC-CHHHHHHHH
Confidence 73 25 346788884 566666554
No 62
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.66 E-value=0.13 Score=43.47 Aligned_cols=97 Identities=7% Similarity=-0.035 Sum_probs=65.7
Q ss_pred CHHHHHHHH--HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 174 GFMDALQRS--RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 174 s~~eAl~~A--k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
+.++-.+.+ +...|+.+|+++.+.+..|..+... | +.+.+-+.. ++.+...|++.. ..++..+++.++|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~-~--~~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~~~Pt~~ 84 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPV-W--KEVIQELEPLGVGIATVNAGHE--RRLARKLGAHSVPAIV 84 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHH-H--HHHHHHHHhcCceEEEEecccc--HHHHHHcCCccCCEEE
Confidence 334343334 3468999999999999888776542 2 134444443 566777776543 3568889999999998
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~ 280 (465)
++.. | .++.++.|..+.+.+.+.|+
T Consensus 85 i~~~--g---~~~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 85 GIIN--G---QVTFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred EEEC--C---EEEEEecCCCCHHHHHHHHh
Confidence 8853 4 35677889888887766554
No 63
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.62 E-value=0.097 Score=42.55 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=61.2
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
.|++++..+. .|+++|+++.+.+..|..+... | +.+.+-+..++.+..+|.+. ...++..|++..+|++.++.
T Consensus 4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~~-l--~~l~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQV-F--EELAKEAFPSVLFLSIEAEE--LPEISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhHH-H--HHHHHHhCCceEEEEEcccc--CHHHHHhcCCccccEEEEEE
Confidence 4556665554 6999999999988777766542 2 22332224467777777653 34567889999999988885
Q ss_pred cCCCcceeeEEeeecCCChHHHHHH
Q 012346 254 PAANQRIALLQQVEGPKSPEEMLMI 278 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~~~~~~~~ 278 (465)
. | .++.++.|. +++++.+.
T Consensus 77 ~--g---~~~~~~~g~-~~~~l~~~ 95 (97)
T cd02984 77 N--G---TIVDRVSGA-DPKELAKK 95 (97)
T ss_pred C--C---EEEEEEeCC-CHHHHHHh
Confidence 3 5 356777774 55665554
No 64
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=95.62 E-value=0.061 Score=45.34 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=60.7
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+...|-||..+|+.+.-....++||.+|...|......+....+|+ |-.+.+.+ +.||.+.||.++.+|.+-
T Consensus 26 ~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi--~~Gk~L~D---~~tL~dy~I~~~stL~l~ 97 (103)
T cd01802 26 DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI--WNNMELED---EYCLNDYNISEGCTLKLV 97 (103)
T ss_pred CCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE--ECCEECCC---CCcHHHcCCCCCCEEEEE
Confidence 4578899999999999999999999999999988766667788887 45667753 579999999999999875
No 65
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.54 E-value=0.14 Score=50.06 Aligned_cols=92 Identities=12% Similarity=0.177 Sum_probs=68.1
Q ss_pred cEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCc---hH------HHHHHHhCCCCCCCcEEEEecCC
Q 012346 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRA---SE------GFKMSNSLKASRYPFCAVVMPAA 256 (465)
Q Consensus 187 K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~---~E------g~~va~~l~~~~~P~i~ii~~~~ 256 (465)
+|-|||+..+.+.-|+.|. +-|..|-+. ++-+.+++++- ++ ....+..+++..+|.+++|.+.+
T Consensus 144 ~~GL~fFy~s~Cp~C~~~a------Pil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLA------QVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred cceEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 4889999998888888875 455566655 67788877753 11 12344689999999999999875
Q ss_pred CcceeeEEeeecCCChHHHHHHHHHHHHhhc
Q 012346 257 NQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (465)
Q Consensus 257 ~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~ 287 (465)
+ ++..++. |.++.++|.+++..+...+.
T Consensus 218 ~-~~~pv~~--G~iS~deL~~Ri~~v~t~~~ 245 (248)
T PRK13703 218 G-SVRPLSY--GFITQDDLAKRFLNVSTDFK 245 (248)
T ss_pred C-cEEEEee--ccCCHHHHHHHHHHHHhccC
Confidence 5 4555554 99999999999988776654
No 66
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=95.53 E-value=0.055 Score=42.09 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=54.7
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.|-||.++|+ ..-....++|+.+|..-|......+...+.|+ |..+.+.+ +.||.++|+.++++|++-
T Consensus 2 ~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li--~~Gk~L~d---~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 2 KVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLI--FAGKILKD---TDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEE--ECCeEcCC---CCcHHHcCCCCCCEEEEE
Confidence 5889999996 47788899999999999987655556778875 56777753 569999999999998874
No 67
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=95.50 E-value=0.094 Score=44.16 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=62.8
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchHHHHHHH-hCCCCCCCcEEEEecC
Q 012346 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSN-SLKASRYPFCAVVMPA 255 (465)
Q Consensus 178 Al~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~-~l~~~~~P~i~ii~~~ 255 (465)
++..+++..|.+||.++.+.+..|+.+... | ..+.+.++. ++.+...+++.. ...++. .+++..||++.++...
T Consensus 13 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 13 ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGE-QREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCCcCCEEEEEcCC
Confidence 555667788999999999999888887644 3 345555654 577877776642 234554 5899999999988753
Q ss_pred CCcceeeEEeeecC-CChHHHHH
Q 012346 256 ANQRIALLQQVEGP-KSPEEMLM 277 (465)
Q Consensus 256 ~~~~~~vl~~i~G~-~~~~~~~~ 277 (465)
.+ . .....|. .+.+.+++
T Consensus 89 ~~-~---~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 89 SR-Q---PIKYPSEQRDVDSLLM 107 (109)
T ss_pred CC-C---ceeccCCCCCHHHHHh
Confidence 22 1 2335563 57777654
No 68
>PRK09381 trxA thioredoxin; Provisional
Probab=95.19 E-value=0.29 Score=40.87 Aligned_cols=89 Identities=8% Similarity=-0.044 Sum_probs=60.7
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeE
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl 263 (465)
+..++.+|+++++.+..|..+...+ ..+.+-...++.+...|++... .+++.|++.++|.++++. .| .++
T Consensus 19 ~~~~~vvv~f~~~~C~~C~~~~p~~---~~l~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~--~G---~~~ 88 (109)
T PRK09381 19 KADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLFK--NG---EVA 88 (109)
T ss_pred cCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHhCCCcEEEEEECCCCh--hHHHhCCCCcCCEEEEEe--CC---eEE
Confidence 4578999999999887887765322 1233333345666677766543 357789999999988885 35 246
Q ss_pred EeeecCCChHHHHHHHHHH
Q 012346 264 QQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 264 ~~i~G~~~~~~~~~~L~~~ 282 (465)
.++.|..+.+++...|...
T Consensus 89 ~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 89 ATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred EEecCCCCHHHHHHHHHHh
Confidence 6778888888776666544
No 69
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=94.98 E-value=0.38 Score=39.93 Aligned_cols=88 Identities=8% Similarity=-0.032 Sum_probs=59.3
Q ss_pred HHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhcc-ceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcc
Q 012346 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNEN-FVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQR 259 (465)
Q Consensus 181 ~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~-fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~ 259 (465)
.+.+..++.+|+++.+.+..|..+... + ..+.+-.+.. +.|...+++++ ..++.|++..+|.+.++.. |
T Consensus 12 ~~i~~~~~vvv~F~a~wC~~Ck~~~p~-l--~~~~~~~~~~~~~~~~vd~d~~---~~~~~~~v~~~Pt~~~~~~--g-- 81 (102)
T cd02948 12 ELLSNKGLTVVDVYQEWCGPCKAVVSL-F--KKIKNELGDDLLHFATAEADTI---DTLKRYRGKCEPTFLFYKN--G-- 81 (102)
T ss_pred HHHccCCeEEEEEECCcCHhHHHHhHH-H--HHHHHHcCCCcEEEEEEeCCCH---HHHHHcCCCcCcEEEEEEC--C--
Confidence 344578999999999999888877542 2 2233333323 34555666533 4678999999998877753 5
Q ss_pred eeeEEeeecCCChHHHHHHHH
Q 012346 260 IALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 260 ~~vl~~i~G~~~~~~~~~~L~ 280 (465)
..+.++.|. +++.+.+.|.
T Consensus 82 -~~~~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 82 -ELVAVIRGA-NAPLLNKTIT 100 (102)
T ss_pred -EEEEEEecC-ChHHHHHHHh
Confidence 356777785 7777766654
No 70
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=94.94 E-value=0.096 Score=55.47 Aligned_cols=76 Identities=36% Similarity=0.388 Sum_probs=43.3
Q ss_pred ceeeEEeeecCCChHHHHHHHHHHHHhhcHHHHHhhHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012346 259 RIALLQQVEGPKSPEEMLMILQKVIEESNPALLQARLDAEERRNNM-RLREEQDAAYRAALEADQARERQRREEQER 334 (465)
Q Consensus 259 ~~~vl~~i~G~~~~~~~~~~L~~~~~~~~~~L~~~r~e~~er~~~r-~lreeQd~aY~~SL~~D~ek~~~r~ee~e~ 334 (465)
++-.+..+.|..++++++..|+..++-++........-+.+....+ .++++.+++++..++++|..+.+...++.+
T Consensus 257 ~fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr 333 (460)
T KOG1363|consen 257 RFPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEERRLQMRRSEQDEREARLALEQEQDDEYQASLEADR 333 (460)
T ss_pred cCchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445556668999999999888777654443222222232223 344444555556666666666665554443
No 71
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=94.91 E-value=0.13 Score=46.52 Aligned_cols=87 Identities=10% Similarity=0.108 Sum_probs=56.7
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHh----hccceEeecccCchH--------------------HHHHHHh
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV----NENFVSWGGSIRASE--------------------GFKMSNS 240 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l----~~~fv~w~~~v~~~E--------------------g~~va~~ 240 (465)
.+|+++|++.++.+..|.... +.+.++. +.++.+++.+.++.+ ...+.+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~------~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 133 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEM------PYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDA 133 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHH------HHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 568888888877665554433 3333333 234666666654332 1356778
Q ss_pred CCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 241 l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
|++..+|..++|++. | .++....|..+.+++.+.|..
T Consensus 134 ~~v~~~P~~~lid~~-g---~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 134 YGVGPLPTTFLIDKD-G---KVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred cCCCCcCeEEEECCC-C---cEEEEEeCCCCHHHHHHHHHH
Confidence 999999999999873 4 356667898898888776654
No 72
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=94.88 E-value=0.26 Score=40.05 Aligned_cols=73 Identities=8% Similarity=0.068 Sum_probs=60.1
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+..++|.|+.++|+.+.-+...+++|+.|++-+......+...+.|+-. -+.+.. +.|+.++|+..+.++.|-
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~--G~~L~~---~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD--GQRIRD---NQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC--CeECCC---CCCHHHcCCCCCCEEEEE
Confidence 5679999999999999999999999999999888776666677777654 444543 569999999999988764
No 73
>PF13728 TraF: F plasmid transfer operon protein
Probab=94.81 E-value=0.24 Score=47.39 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=61.5
Q ss_pred CcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCch---------HHHHHHHhCCCCCCCcEEEEecC
Q 012346 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS---------EGFKMSNSLKASRYPFCAVVMPA 255 (465)
Q Consensus 186 ~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~---------Eg~~va~~l~~~~~P~i~ii~~~ 255 (465)
.+|-|||+..+.|.-|+.|. +-+..|-++ +|-+..++++.. ....++..|++..+|.+++|.+.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~------pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQA------PILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred hCeEEEEEEcCCCchhHHHH------HHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 68889999988776666664 445555554 677777777531 12346778999999999999986
Q ss_pred CCcceeeEEeeecCCChHHHHHHH
Q 012346 256 ANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 256 ~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
++ .+..|+ .|.++.++|.+++
T Consensus 194 ~~-~~~pv~--~G~~s~~~L~~ri 214 (215)
T PF13728_consen 194 TK-KWYPVS--QGFMSLDELEDRI 214 (215)
T ss_pred CC-eEEEEe--eecCCHHHHHHhh
Confidence 54 455555 4999999998875
No 74
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=94.71 E-value=0.09 Score=44.78 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=58.2
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcC----------------CCHHHHHHhhccceEeecccCchHHHHHHHhCCCCC
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTL----------------CNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASR 245 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l----------------~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~ 245 (465)
+...+|..+|++.++.+..|..+...+- ..+.+.++++++-+-|....+ +...+++.|++..
T Consensus 16 ~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~i~~ 93 (123)
T cd03011 16 ESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVIND--PDGVISARWGVSV 93 (123)
T ss_pred HHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEEC--CCcHHHHhCCCCc
Confidence 3344588888888877766665532210 124455555543333332221 2235788899999
Q ss_pred CCcEEEEecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 246 YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 246 ~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
+|.++||+.. | +..++.|..+.+++.+++
T Consensus 94 ~P~~~vid~~-g----i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 94 TPAIVIVDPG-G----IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred ccEEEEEcCC-C----eEEEEeccCCHHHHHhhc
Confidence 9999999962 2 567788999999887653
No 75
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=94.65 E-value=0.26 Score=40.91 Aligned_cols=96 Identities=10% Similarity=0.132 Sum_probs=63.3
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
+|++++..+++ .+..||+++.+.+..|..+.. +|. .+.+-++. ++.+...+.... -.+++.|++.++|.+.
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATAY--SSIASEFGVRGYPTIK 77 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECccC--HhHHhhcCCccccEEE
Confidence 45677777654 678899999998877777654 231 33333332 355555665442 2567889999999999
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
++.. |. ..+..|..+.+++...++.
T Consensus 78 l~~~--~~----~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 78 LLKG--DL----AYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred EEcC--CC----ceeecCCCCHHHHHHHHHh
Confidence 9853 31 2346788888887776654
No 76
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.39 E-value=0.18 Score=54.43 Aligned_cols=100 Identities=11% Similarity=0.071 Sum_probs=79.6
Q ss_pred HHHHHHhcCc--EEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCc--hHHHHHHHhCCCCCCCcEEEEe
Q 012346 178 ALQRSRSVFK--LLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA--SEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 178 Al~~Ak~e~K--~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~--~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
.++.+..+.| +.+|.+.-+.+..|+.|-+.|++++.|..-+. ++++.++|++. ++-...-+.|++-.-|.+.++.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 6666666666 99999999999999999999999877765544 78999999975 4445566789999999999998
Q ss_pred cCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 254 PAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
+. |....+ +.|.++.+.|++.|+.+
T Consensus 543 ~~-g~e~~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQ-GSEPEI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred CC-CCcCcC---CcceecHHHHHHHHHHh
Confidence 64 432222 67899999999998764
No 77
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=94.38 E-value=0.24 Score=40.50 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=59.2
Q ss_pred HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 183 k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
++..|..+|+++++.+..|+.+...+ ..+.+.+++ ++.+...|.+.. .++..+++..+|.+.++.. |..
T Consensus 15 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~~~~~--~~~- 85 (104)
T cd02995 15 LDSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTILFFPA--GDK- 85 (104)
T ss_pred hCCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEEEEcC--CCc-
Confidence 34468899999999988887776433 455555654 577777776543 3567788899999998875 321
Q ss_pred eeEEeeecCCChHHHHH
Q 012346 261 ALLQQVEGPKSPEEMLM 277 (465)
Q Consensus 261 ~vl~~i~G~~~~~~~~~ 277 (465)
....+..|..+.+.+++
T Consensus 86 ~~~~~~~g~~~~~~l~~ 102 (104)
T cd02995 86 SNPIKYEGDRTLEDLIK 102 (104)
T ss_pred CCceEccCCcCHHHHHh
Confidence 12335668778777765
No 78
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.37 E-value=0.34 Score=40.47 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=60.9
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc------cceEeecccCchHHHHHHHhCCCCCC
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE------NFVSWGGSIRASEGFKMSNSLKASRY 246 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~------~fv~w~~~v~~~Eg~~va~~l~~~~~ 246 (465)
.+|++++ +..++.||+++++.+..|..+... |. .+.+.+++ ++.+...|.+.. ..+++.|++.+|
T Consensus 9 ~~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~-~~--~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~~ 79 (108)
T cd02996 9 GNIDDIL----QSAELVLVNFYADWCRFSQMLHPI-FE--EAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINKY 79 (108)
T ss_pred hhHHHHH----hcCCEEEEEEECCCCHHHHhhHHH-HH--HHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCcC
Confidence 3455544 457899999999999888887643 21 23333322 345555666543 357899999999
Q ss_pred CcEEEEecCCCcceeeEEeeecCCChHHHHHH
Q 012346 247 PFCAVVMPAANQRIALLQQVEGPKSPEEMLMI 278 (465)
Q Consensus 247 P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~ 278 (465)
|++.++-. |.. +.....|..+.+++++.
T Consensus 80 Ptl~~~~~--g~~--~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 80 PTLKLFRN--GMM--MKREYRGQRSVEALAEF 107 (108)
T ss_pred CEEEEEeC--CcC--cceecCCCCCHHHHHhh
Confidence 99988753 532 23456688888877653
No 79
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=1.4 Score=48.76 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=17.2
Q ss_pred HHHHHhHhhhCCCChhHHHHHHhhCCCC
Q 012346 6 DKLAYFQAITGLEDPDLCTEILQAHDWD 33 (465)
Q Consensus 6 ~~l~qf~~it~~~~~~~a~~~L~~~~W~ 33 (465)
++.-+++.+.|+-+-+.|+.++-+++-.
T Consensus 20 ~qF~~Lkp~~gfitg~qArnfflqS~LP 47 (1118)
T KOG1029|consen 20 AQFGQLKPGQGFITGDQARNFFLQSGLP 47 (1118)
T ss_pred HHHhccCCCCCccchHhhhhhHHhcCCC
Confidence 3333444445555557899888877754
No 80
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=93.91 E-value=0.1 Score=35.10 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=30.3
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhh
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
.++|+++.++ |++. +.|+..|..++||++.|+.-.
T Consensus 2 ~~~v~~L~~m-Gf~~-~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 2 EEKIDQLLEM-GFSR-EEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHH
Confidence 4678888887 8888 799999999999999998754
No 81
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=93.87 E-value=0.27 Score=39.20 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=54.4
Q ss_pred EEEEECCCCce-EEE-EecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGER-KER-RFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r-~~r-rF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.|-||.++|+. ..- -...++||.+|..-|......+....+|+ |-.+.+.+ +.||.+.|+.++++|.+-
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi--~~Gk~L~D---~~tL~~y~i~~~~~i~l~ 72 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLF--YRGKQMED---GHTLFDYNVGLNDIIQLL 72 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEE--eCCEECCC---CCCHHHcCCCCCCEEEEE
Confidence 57899999986 344 35689999999999987765667778887 44677753 679999999999998764
No 82
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=93.69 E-value=0.97 Score=44.82 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=64.5
Q ss_pred HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchH---------HHHHHHhCCCCCCCcEEEE
Q 012346 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASE---------GFKMSNSLKASRYPFCAVV 252 (465)
Q Consensus 183 k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~E---------g~~va~~l~~~~~P~i~ii 252 (465)
.-.+|+.||++..+.+..|..+. +.+.++-++ ++.+.+++++... ...+++.|++..+|.++|+
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~~------P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv 236 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQA------PILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLA 236 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHHh------HHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEE
Confidence 34579999999998887777653 455555554 4566666665421 1246789999999999999
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.+.+| . +.....|.++.+++...+..+.
T Consensus 237 ~~~~~-~--v~~v~~G~~s~~eL~~~i~~~a 264 (271)
T TIGR02740 237 DPDPN-Q--FTPIGFGVMSADELVDRILLAA 264 (271)
T ss_pred ECCCC-E--EEEEEeCCCCHHHHHHHHHHHh
Confidence 97534 2 3334558999999998887654
No 83
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=93.64 E-value=0.6 Score=38.37 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=61.3
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
+|++.+ .+.+..+|+++++.+..|..+.. .| ..+.+-++.++.|...|++.. -.+++.|++..||.+.++-
T Consensus 10 ~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p-~~--~~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 10 DFDAAV----NSGEIWFVNFYSPRCSHCHDLAP-TW--REFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred hHHHHh----cCCCeEEEEEECCCChHHHHhHH-HH--HHHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCEEEEEc
Confidence 455544 34589999999998877776653 21 133444455677777887653 3468899999999998884
Q ss_pred cCCCcceeeEEeeecCCChHHHHH
Q 012346 254 PAANQRIALLQQVEGPKSPEEMLM 277 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~~~~~~~ 277 (465)
.|. .+.+..|..+.+.+.+
T Consensus 81 --~g~---~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 81 --SGM---NPEKYYGDRSKESLVK 99 (101)
T ss_pred --CCC---CcccCCCCCCHHHHHh
Confidence 253 2456778888877654
No 84
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=93.62 E-value=0.89 Score=42.14 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=62.7
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCc-hH-HH-------------------HHHHhCCC
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-SE-GF-------------------KMSNSLKA 243 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~-~E-g~-------------------~va~~l~~ 243 (465)
.+|+++|++..+.+..|.... +.+.++-+.++.+++.++++ .+ .. .++..|++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~------p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHH------HHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 589999999987776665543 23444444466677766543 22 11 23446788
Q ss_pred CCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 244 SRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 244 ~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
..+|..+||++. | .+..++.|..+.+++-..+...+.+.
T Consensus 141 ~~~P~t~vid~~-G---~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 141 YGAPETFLIDGN-G---IIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred CcCCeEEEECCC-c---eEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 889999999974 5 36677889999888888787777554
No 85
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.54 E-value=0.92 Score=37.34 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=60.0
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
+|++.+. +..+..+|+++++.+..|..+.. .| +.+.+-+...+.+...|.+.. ..+++.|++..||.+.++.
T Consensus 10 ~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 10 DFPELVL---NRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQKY--ESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred HHHHHHh---cCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCch--HHHHHHcCCCcccEEEEEc
Confidence 4555443 45669999999998888877753 21 122222333556667776543 3578899999999999887
Q ss_pred cCCCcceeeEEeeecCCC-hHHHHH
Q 012346 254 PAANQRIALLQQVEGPKS-PEEMLM 277 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~-~~~~~~ 277 (465)
.. |. .+.+..|..+ .+++..
T Consensus 82 ~g-~~---~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 82 GN-AS---KYHSYNGWHRDADSILE 102 (104)
T ss_pred CC-CC---CceEccCCCCCHHHHHh
Confidence 52 22 2456778776 777654
No 86
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=93.41 E-value=1.2 Score=38.56 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=65.2
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCH---HHH-HHhh-ccceEeecccCchHHHHHHHhCCCCCC
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNE---VLA-AFVN-ENFVSWGGSIRASEGFKMSNSLKASRY 246 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~---~v~-~~l~-~~fv~w~~~v~~~Eg~~va~~l~~~~~ 246 (465)
..+|++.+. +..++++|+.....+ +..-|+.....| ++. ++++ .++.|..+|++.. ..+++.|++..+
T Consensus 16 ~~nF~~~v~---~~~~~vvv~f~a~wc--~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~--~~La~~~~I~~i 88 (120)
T cd03065 16 EKNYKQVLK---KYDVLCLLYHEPVES--DKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD--AKVAKKLGLDEE 88 (120)
T ss_pred hhhHHHHHH---hCCceEEEEECCCcC--ChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC--HHHHHHcCCccc
Confidence 345555433 344566666665443 223555544453 333 4443 4678888888744 678999999999
Q ss_pred CcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 247 PFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 247 P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
|++.++-. |. ++. ..|..+.+.+.+.|...+
T Consensus 89 PTl~lfk~--G~---~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 89 DSIYVFKD--DE---VIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cEEEEEEC--CE---EEE-eeCCCCHHHHHHHHHHHh
Confidence 99988864 53 345 779999999999887655
No 87
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=93.37 E-value=2.4 Score=40.78 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=70.4
Q ss_pred cccCHHHHHHHHH-hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 171 VSEGFMDALQRSR-SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 171 ~~gs~~eAl~~Ak-~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
-..+|++.+...+ ...+..+|+++.+.+..|..+... | +.+.+-++..+.+...|++. ...+++.|++..||.+
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~~--~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDATR--ALNLAKRFAIKGYPTL 110 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCcc--cHHHHHHcCCCcCCEE
Confidence 3456666665443 245778999999999888887653 2 34444445444454555443 3467889999999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.++.. |. ++....|..+.+++.+.+..-+..
T Consensus 111 ~~f~~--G~---~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 111 LLFDK--GK---MYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred EEEEC--CE---EEEeeCCCCCHHHHHHHHHHHHHh
Confidence 98884 52 455667888888887766655543
No 88
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=93.37 E-value=0.48 Score=39.37 Aligned_cols=84 Identities=7% Similarity=0.028 Sum_probs=57.0
Q ss_pred HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceee
Q 012346 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (465)
Q Consensus 183 k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~v 262 (465)
...+|..+|+++.+.+..|..+... | +.+.+... ++.+...|.++ +.-.++..|++..||++.++.. | .
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~-l--~~la~~~~-~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~--g----~ 83 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPH-F--NALSSMFP-QIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNS--T----P 83 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHH-H--HHHHHHhc-cCceEEEECCC-CCHHHHHhcCCeecCEEEEEcC--C----c
Confidence 4678999999999988777665421 1 12222222 45666666541 2236788999999999999975 3 2
Q ss_pred EEeeecCCChHHHHH
Q 012346 263 LQQVEGPKSPEEMLM 277 (465)
Q Consensus 263 l~~i~G~~~~~~~~~ 277 (465)
+.+..|..+.+.+.+
T Consensus 84 ~~~~~G~~~~~~l~~ 98 (100)
T cd02999 84 RVRYNGTRTLDSLAA 98 (100)
T ss_pred eeEecCCCCHHHHHh
Confidence 457789888887765
No 89
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=93.31 E-value=1.1 Score=36.54 Aligned_cols=86 Identities=8% Similarity=0.026 Sum_probs=55.2
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeE
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl 263 (465)
+..++.+|+++++.+..|..|...+ ..+.+-+...+.+...|.+. .-.+++.|++..+|.+.++.. |. ...
T Consensus 16 ~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~~P~~~~~~~--~~--~~~ 86 (103)
T cd03001 16 NSDDVWLVEFYAPWCGHCKNLAPEW---KKAAKALKGIVKVGAVDADV--HQSLAQQYGVRGFPTIKVFGA--GK--NSP 86 (103)
T ss_pred cCCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCceEEEEECcc--hHHHHHHCCCCccCEEEEECC--CC--cce
Confidence 4567799999998887777764321 22333333445555555543 345788999999999999875 31 123
Q ss_pred EeeecCCChHHHHHH
Q 012346 264 QQVEGPKSPEEMLMI 278 (465)
Q Consensus 264 ~~i~G~~~~~~~~~~ 278 (465)
....|..+.+++++.
T Consensus 87 ~~~~g~~~~~~l~~~ 101 (103)
T cd03001 87 QDYQGGRTAKAIVSA 101 (103)
T ss_pred eecCCCCCHHHHHHH
Confidence 456677888877653
No 90
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=93.22 E-value=0.41 Score=37.72 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=54.7
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeC-CCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSN-FPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~-fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
+|.|++ +|+...-.+..++|+.+|..-+......++..-.|+-+ |-.+.+. .+.||.++|+.++..+++
T Consensus 2 ~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~---D~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 2 PVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE---DDVKISALKLKPNTKIMM 71 (74)
T ss_pred EEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC---CCcCHHHcCCCCCCEEEE
Confidence 577777 77788889999999999999999887667788888752 2233332 268999999999988876
No 91
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=93.18 E-value=0.78 Score=39.23 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=66.1
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHH-HhCCCCCCCcE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMS-NSLKASRYPFC 249 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va-~~l~~~~~P~i 249 (465)
-..+|.++... .++.++.||.++.+.+..|+.+.- .| +++.+.++..+.|...|.+... .++ +.|++.+||.+
T Consensus 15 ~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p-~~--~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PTl 88 (113)
T cd03006 15 YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQ-EF--EQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPVI 88 (113)
T ss_pred chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCEE
Confidence 45566666543 678899999999999988877653 11 2444445556667777766444 345 58999999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLM 277 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~ 277 (465)
.++-. |.. ..+..|..+.+.++.
T Consensus 89 ~lf~~--g~~---~~~y~G~~~~~~i~~ 111 (113)
T cd03006 89 HLYYR--SRG---PIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEEC--Ccc---ceEEeCCCCHHHHHh
Confidence 88853 432 345678888888765
No 92
>PTZ00051 thioredoxin; Provisional
Probab=93.13 E-value=1.1 Score=36.29 Aligned_cols=85 Identities=12% Similarity=0.103 Sum_probs=56.3
Q ss_pred HHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEec
Q 012346 177 DALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMP 254 (465)
Q Consensus 177 eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~ 254 (465)
+.+....++.+.++|+++.+.+..|..+.. .+.++-++ ++.+...|.+ +...+++.|++..+|++.++.
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~- 79 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAP------FYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFK- 79 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhH------HHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEe-
Confidence 445556678899999999998877777753 22333332 4566666654 345678899999999977664
Q ss_pred CCCcceeeEEeeecCCChHHH
Q 012346 255 AANQRIALLQQVEGPKSPEEM 275 (465)
Q Consensus 255 ~~~~~~~vl~~i~G~~~~~~~ 275 (465)
.| .++.++.|. .++++
T Consensus 80 -~g---~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 80 -NG---SVVDTLLGA-NDEAL 95 (98)
T ss_pred -CC---eEEEEEeCC-CHHHh
Confidence 24 346677774 44443
No 93
>PHA02278 thioredoxin-like protein
Probab=93.08 E-value=1.2 Score=37.39 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=59.1
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchH--HHHHHHhCCCCCCCcEEEEecCCCc
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASE--GFKMSNSLKASRYPFCAVVMPAANQ 258 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~E--g~~va~~l~~~~~P~i~ii~~~~~~ 258 (465)
++.+..+|+++.+.+..|..+. |.+.++-.+ ..-++..+++..+ ...+++.|++.+.|+++++-. |
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~------p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~--G- 82 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILK------SVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD--G- 82 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHH------HHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC--C-
Confidence 5889999999999998887664 333333222 2336667766432 345889999999999988874 4
Q ss_pred ceeeEEeeecCCChHHHHH
Q 012346 259 RIALLQQVEGPKSPEEMLM 277 (465)
Q Consensus 259 ~~~vl~~i~G~~~~~~~~~ 277 (465)
+.+.++.|..+.+++.+
T Consensus 83 --~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 83 --QLVKKYEDQVTPMQLQE 99 (103)
T ss_pred --EEEEEEeCCCCHHHHHh
Confidence 46788999888877654
No 94
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=93.01 E-value=0.18 Score=33.98 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=30.9
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhh
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~ 42 (465)
+++|++++++ |.+. +.|+..|..++||++.|+.-.|
T Consensus 2 ~~~v~~L~~m-Gf~~-~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEM-GFSR-EEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHh
Confidence 4678888884 8885 8999999999999999997665
No 95
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=92.99 E-value=0.48 Score=37.05 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=53.0
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.|-||. ++...-....++||.+|..-|......+.....|+- -.+.+.+ +.||.++|+.++++|.+-
T Consensus 2 qi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~--~Gk~L~D---~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 2 QLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL--AGVPLED---DATLGQCGVEELCTLEVA 68 (74)
T ss_pred EEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE--CCeECCC---CCCHHHcCCCCCCEEEEE
Confidence 456776 466778889999999999999887766667777874 4666653 579999999999999874
No 96
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=92.87 E-value=0.39 Score=36.25 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=51.5
Q ss_pred EECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 393 VRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 393 iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|..+|......+..+.|+.+|...+......+.....|+- -.+.+. .+.||.++|+.+++.|+|-
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~--~g~~l~---d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY--AGKILK---DDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE--CCcCCC---CcCCHHHCCCCCCCEEEEE
Confidence 56778988999999999999999999876555556666643 345553 2678999999999988874
No 97
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=92.85 E-value=0.88 Score=38.89 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=47.0
Q ss_pred CeEEEEEECCCCc-eEEEEecCCCcHHHHHHHHHhcC-------CCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCe
Q 012346 387 NVTQVLVRFPNGE-RKERRFHSTAVVQLLYDYVDSLG-------CLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQA 458 (465)
Q Consensus 387 ~~~~i~iRlP~G~-r~~rrF~~~~tl~~l~~fv~~~~-------~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~ 458 (465)
+.+.|.|||.||+ +..-+|..++|+.+|...|-..= .......+|+.. .|.+.+ +.||.++++..+.
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~--GriL~d---~~tL~~~~~~~~~ 75 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYA--GRILED---NKTLSDCRLPSGE 75 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEET--TEEE-S---SSBTGGGT--TTS
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeC--CeecCC---cCcHHHhCCCCCC
Confidence 3578999999999 89999999999999999997531 112345667664 456652 7799999877555
Q ss_pred e
Q 012346 459 S 459 (465)
Q Consensus 459 ~ 459 (465)
+
T Consensus 76 ~ 76 (111)
T PF13881_consen 76 T 76 (111)
T ss_dssp E
T ss_pred C
Confidence 3
No 98
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.81 E-value=0.32 Score=50.48 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=57.1
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCC---CCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGC---LEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~---~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|.||..+|+.+.-....++||.+|...|..... +.....+|+ |-.|++.+ ++||.++||..+.+|+|-
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI--y~GkiL~D---d~tL~dy~I~e~~~Ivvm 73 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI--YSGKILSD---DKTVREYKIKEKDFVVVM 73 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE--ECCEECCC---CCcHHHcCCCCCCEEEEE
Confidence 6889999999999999999999999999987653 456678887 55777753 569999999988887763
No 99
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.41 Score=52.54 Aligned_cols=120 Identities=14% Similarity=0.233 Sum_probs=83.7
Q ss_pred CC-CccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCc-hH--HH--HHHHh
Q 012346 167 KP-NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-SE--GF--KMSNS 240 (465)
Q Consensus 167 ~p-~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~-~E--g~--~va~~ 240 (465)
.| .||.=+ .+|+..|+++.|++||=|--..+.=|+.+-++.+.||+|.++||++||.-.+|-.. |+ .. .+++.
T Consensus 24 nPV~W~pW~-~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~ 102 (667)
T COG1331 24 NPVDWYPWG-EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQA 102 (667)
T ss_pred CCccccccC-HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHH
Confidence 45 565433 79999999999999999887778889999999999999999999999999998653 22 22 34555
Q ss_pred CC-CCCCCcEEEEecCCCcceeeEEee-----ecCCChHHHHHHHHHHHHhhcH
Q 012346 241 LK-ASRYPFCAVVMPAANQRIALLQQV-----EGPKSPEEMLMILQKVIEESNP 288 (465)
Q Consensus 241 l~-~~~~P~i~ii~~~~~~~~~vl~~i-----~G~~~~~~~~~~L~~~~~~~~~ 288 (465)
+. -...|.=+++.|- +.-.-.-..+ -|...-.+++..|.....+-..
T Consensus 103 ~tG~GGWPLtVfLTPd-~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~W~edr~ 155 (667)
T COG1331 103 ITGQGGWPLTVFLTPD-GKPFFAGTYFPKEDRYGRPGFKQLLEAIRETWREDRE 155 (667)
T ss_pred hccCCCCceeEEECCC-CceeeeeeecCCcccCCCcCHHHHHHHHHHHHHhhHH
Confidence 53 3479988888873 2111001111 1344556777777777764433
No 100
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=92.48 E-value=0.46 Score=35.31 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=48.7
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCC
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQ 457 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~ 457 (465)
+|.||.++ +....++..++|+.+|..-+......++....|+.+ .+.+.+ +.||.++|+.++
T Consensus 2 ~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~--g~~L~d---~~tL~~~~i~~~ 63 (64)
T smart00213 2 ELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK--GKVLED---DRTLADYNIQDG 63 (64)
T ss_pred EEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC--CEECCC---CCCHHHcCCcCC
Confidence 58899999 578889999999999999998765555666777644 455543 579999999865
No 101
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=92.45 E-value=0.45 Score=38.85 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=56.8
Q ss_pred HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 183 k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
+...|+++|+++++.+..|..+... | ..+.+.+. .++.+...|.+.+ .-.+++.|++..+|.+.++... +.
T Consensus 15 ~~~~~~~~v~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~~-~~-- 87 (105)
T cd02998 15 GDDKKDVLVEFYAPWCGHCKNLAPE-Y--EKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPKG-ST-- 87 (105)
T ss_pred cCCCCcEEEEEECCCCHHHHhhChH-H--HHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeCC-CC--
Confidence 3456799999999988777666422 1 23333333 2567777776552 3467888999999999999753 22
Q ss_pred eeEEeeecCCChHHHHH
Q 012346 261 ALLQQVEGPKSPEEMLM 277 (465)
Q Consensus 261 ~vl~~i~G~~~~~~~~~ 277 (465)
......|..+.+++.+
T Consensus 88 -~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 88 -EPVKYEGGRDLEDLVK 103 (105)
T ss_pred -CccccCCccCHHHHHh
Confidence 2334567777777654
No 102
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=92.35 E-value=1.1 Score=36.33 Aligned_cols=89 Identities=12% Similarity=0.129 Sum_probs=57.3
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
+|.+++. .. ..||+++.+.+..|..+... | ..+.+-.+. ++.+...|.+... .+++.|++..+|++.
T Consensus 9 ~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 9 NFDHHIA----EG-NHFVKFFAPWCGHCKRLAPT-W--EQLAKKFNNENPSVKIAKVDCTQHR--ELCSEFQVRGYPTLL 78 (102)
T ss_pred HHHHHhh----cC-CEEEEEECCCCHHHHHhCHH-H--HHHHHHHhccCCcEEEEEEECCCCh--hhHhhcCCCcCCEEE
Confidence 4555553 33 38899999888777776432 2 123333332 5666666655433 567889999999999
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLM 277 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~ 277 (465)
++.. |. .+.+..|..+.+++.+
T Consensus 79 ~~~~--g~---~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 79 LFKD--GE---KVDKYKGTRDLDSLKE 100 (102)
T ss_pred EEeC--CC---eeeEeeCCCCHHHHHh
Confidence 8843 53 3567788888776654
No 103
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=0.98 Score=40.54 Aligned_cols=98 Identities=12% Similarity=0.132 Sum_probs=71.5
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh---ccceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~---~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
-+..+--+.-.+..++.+|.+|.+.+.-|..+. |-+-++.. ..|-|+..|++ +.-.++..|.++.+|.+
T Consensus 48 ~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~------P~l~~~~~~~~g~~k~~kvdtD--~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 48 QSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLG------PILEELVSEYAGKFKLYKVDTD--EHPELAEDYEISAVPTV 119 (150)
T ss_pred cCHHHHHHHHHccCCCEEEEEecCcCccHhHhh------HHHHHHHHhhcCeEEEEEEccc--cccchHhhcceeeeeEE
Confidence 344444555667889999999998887776654 33334443 36778877754 44567899999999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
+++.. |. ...++.|..+.+.+.+.+..++
T Consensus 120 lvfkn--Ge---~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 120 LVFKN--GE---KVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred EEEEC--CE---EeeeecccCCHHHHHHHHHHHh
Confidence 99986 63 4577889999888888887765
No 104
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.04 E-value=2.5 Score=35.86 Aligned_cols=95 Identities=8% Similarity=0.019 Sum_probs=60.3
Q ss_pred HHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 181 ~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
.+.+..+-++|+++.+.+..|..+-. +|. ++.+.. ..+-+...|++. .-.++..|++.+.|++.+.... + ..
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~~-~l~--~la~~~-~~i~~~~vd~d~--~~~l~~~~~v~~vPt~~i~~~g-~-~~ 88 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTKQ-LLE--ELSELS-DKLKLEIYDFDE--DKEKAEKYGVERVPTTIFLQDG-G-KD 88 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHHH-HHH--HHHHhc-CceEEEEEeCCc--CHHHHHHcCCCcCCEEEEEeCC-e-ec
Confidence 34456677888888888888875542 221 111111 234455566653 3467889999999999998741 1 11
Q ss_pred eeEEeeecCCChHHHHHHHHHHHH
Q 012346 261 ALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 261 ~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
..+ ++.|..+..+|.+.|..+++
T Consensus 89 ~~~-~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 89 GGI-RYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ceE-EEEecCchHHHHHHHHHHHh
Confidence 111 56788888888888877654
No 105
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.01 E-value=1.2 Score=36.52 Aligned_cols=92 Identities=10% Similarity=0.165 Sum_probs=60.0
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
..+|++++ +.+| +|+++.+.+..|..+... |. .+.+..+. ++.+...|.++.. .+++.|++.+||.+.
T Consensus 8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~-~~--~l~~~~~~~~v~~~~vd~~~~~--~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPE-WE--EFADWSDDLGINVAKVDVTQEP--GLSGRFFVTALPTIY 76 (101)
T ss_pred hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHH-HH--HHHHhhccCCeEEEEEEccCCH--hHHHHcCCcccCEEE
Confidence 34566654 2345 699999988777776542 21 22333332 5677777776544 367899999999998
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~ 280 (465)
++. .|. + .+..|..+.+++.+.++
T Consensus 77 ~~~--~g~---~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 77 HAK--DGV---F-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred EeC--CCC---E-EEecCCCCHHHHHHHHh
Confidence 863 353 2 56779888888776553
No 106
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=91.83 E-value=0.64 Score=37.94 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=42.1
Q ss_pred eEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCC-CccCcccccCCCCCeeEEEEe
Q 012346 400 RKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTD-KFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 400 r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~-~~~~TL~e~gL~p~~~L~ve~ 464 (465)
-+++.|+++|||..|-..+...... ...-+|-.-|-...+... +...||+|+||..+.+|++|.
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~ 79 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEE 79 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEe
Confidence 5899999999999999998876654 444455443322233211 247899999999999999984
No 107
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=91.78 E-value=0.45 Score=40.48 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=50.7
Q ss_pred CeEEEEEECCCCce-EEEEecCCCcHHHHHHHHHhcCC-------CCCcCeEEEeCCCCcccCCCCccCcccccC-----
Q 012346 387 NVTQVLVRFPNGER-KERRFHSTAVVQLLYDYVDSLGC-------LEVQNYSLVSNFPRVVYSTDKFSLSLKEAG----- 453 (465)
Q Consensus 387 ~~~~i~iRlP~G~r-~~rrF~~~~tl~~l~~fv~~~~~-------~~~~~f~L~t~fPr~~~~~~~~~~TL~e~g----- 453 (465)
+.+-|.|||+||+- --.+|..++||.+|..-|...-. .....-.|+- --|++.+ ++||.+++
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy--sGKiLeD---~~TL~d~~~p~g~ 77 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS--AGKILEN---SKTVGECRSPVGD 77 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe--CCeecCC---CCcHHHhCCcccc
Confidence 46789999999963 45789999999999999985431 1234455553 3566653 68999998
Q ss_pred -CCCCeeEEEE
Q 012346 454 -LHPQASLFVE 463 (465)
Q Consensus 454 -L~p~~~L~ve 463 (465)
+....+++|-
T Consensus 78 ~~~~~~TmHvv 88 (113)
T cd01814 78 IAGGVITMHVV 88 (113)
T ss_pred cCCCceEEEEE
Confidence 4445666553
No 108
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=91.65 E-value=1.2 Score=36.06 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=54.9
Q ss_pred EEEEEECCCCc--eEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeC---CCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGE--RKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSN---FPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~--r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~---fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+.|.|..++-+ ...+||..+.||.+|-.-++..-..++...+|.-- -+......++...+|...|+.++..|+|.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 57788877764 89999999999999999999876666666665432 11222222345899999999999999986
No 109
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=91.34 E-value=3.5 Score=36.84 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=64.9
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
.|++++..+ +.|+++|.+..+.+..|..+- .+| +++.+-+.+...|+.+|++... .+++.|++...|.+.++.
T Consensus 13 e~d~~I~~~--~~~lVVvdF~A~WCgpCk~m~-p~l--~~la~~~~~~~~~~kVDVDe~~--dla~~y~I~~~~t~~~ff 85 (142)
T PLN00410 13 AVDQAILAE--EERLVVIRFGHDWDETCMQMD-EVL--ASVAETIKNFAVIYLVDITEVP--DFNTMYELYDPCTVMFFF 85 (142)
T ss_pred HHHHHHHhc--CCCEEEEEEECCCChhHHHHH-HHH--HHHHHHcCCceEEEEEECCCCH--HHHHHcCccCCCcEEEEE
Confidence 355555533 688999999998887776552 222 1222222333566899988544 678899999777666555
Q ss_pred cCCCcceeeEEeeec--------CCChHHHHHHHHHHHH
Q 012346 254 PAANQRIALLQQVEG--------PKSPEEMLMILQKVIE 284 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G--------~~~~~~~~~~L~~~~~ 284 (465)
. .| .+ .+.+..| ..+.++|+..+..++.
T Consensus 86 k-~g-~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 86 R-NK-HI-MIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred E-CC-eE-EEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 4 24 34 4556777 5677888888776653
No 110
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=91.20 E-value=0.62 Score=36.82 Aligned_cols=65 Identities=12% Similarity=-0.105 Sum_probs=49.8
Q ss_pred ECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCC-CCeeEEEE
Q 012346 394 RFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLH-PQASLFVE 463 (465)
Q Consensus 394 RlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~-p~~~L~ve 463 (465)
+...|..+.-.+..++||.+|...|......++....| |--+.+.. .+.||.+.|+. ++.+|++-
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL---~~G~~L~d--D~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW---VIGQRLAR--DQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE---EcCCeeCC--CcCCHHHcCCCCCCCEEEEE
Confidence 45678888899999999999999999876666677777 44444432 36799999999 55777763
No 111
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=91.00 E-value=1.1 Score=34.61 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=52.5
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCC-cCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEV-QNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~-~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
++|.++..+|+.+.-+-..+++++.|++........+. ..+.|.-. .+.+. .+.|++++||..+..+-|
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd--G~~L~---~~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD--GKRLD---PNDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET--TEEE----TTSCHHHHT-STTEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC--CEEcC---CCCCHHHCCCCCCCEEEE
Confidence 47889999999999999999999999988766554455 66776433 44453 367999999999988765
No 112
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=90.84 E-value=0.65 Score=36.58 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=50.0
Q ss_pred CCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 397 NGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 397 ~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|+.+.-.+..++||.+|.+-|......+.....|+-. .+.+.+ +.||.+.|+.++.+|+|-
T Consensus 6 ~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~--G~~L~d---~~tL~~~~i~~g~~l~v~ 67 (76)
T cd01800 6 NGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE--GIFIKD---SNSLAYYNLANGTIIHLQ 67 (76)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC--CEEcCC---CCcHHHcCCCCCCEEEEE
Confidence 57788889999999999999998876666777888743 445532 579999999999999874
No 113
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=90.71 E-value=3.1 Score=35.70 Aligned_cols=98 Identities=8% Similarity=0.141 Sum_probs=65.9
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--c-ceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--N-FVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~-fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..|++++..+ +.|.++|-+..+.+..|... +|-+.++-++ + .+|+.+|+++ ...+++.|.+..-|+.
T Consensus 3 ~~~d~~i~~~--~~klVVVdF~a~WC~pCk~m------dp~l~ela~~~~~~~~f~kVDVDe--v~dva~~y~I~amPtf 72 (114)
T cd02986 3 KEVDQAIKST--AEKVLVLRFGRDEDAVCLQL------DDILSKTSHDLSKMASIYLVDVDK--VPVYTQYFDISYIPST 72 (114)
T ss_pred HHHHHHHHhc--CCCEEEEEEeCCCChhHHHH------HHHHHHHHHHccCceEEEEEeccc--cHHHHHhcCceeCcEE
Confidence 3567777777 79999999999888777544 4444444432 5 7899999984 4457899999999999
Q ss_pred EEEecCCCcceee------EEeeecCC-ChHHHHHHHHHH
Q 012346 250 AVVMPAANQRIAL------LQQVEGPK-SPEEMLMILQKV 282 (465)
Q Consensus 250 ~ii~~~~~~~~~v------l~~i~G~~-~~~~~~~~L~~~ 282 (465)
.++-. |..|.+ -.++.|.+ +.++|+..+..+
T Consensus 73 vffkn--gkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 73 IFFFN--GQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEEC--CcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 87753 333332 12333433 557888776554
No 114
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=90.68 E-value=1.2 Score=36.34 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=54.6
Q ss_pred CcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCC--CCCcEEEEecCCCcceeeE
Q 012346 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKAS--RYPFCAVVMPAANQRIALL 263 (465)
Q Consensus 186 ~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~--~~P~i~ii~~~~~~~~~vl 263 (465)
.++++|++.++++.+|..+...+ ..+.+-.+..+.|...|++. ...++..|++. .+|.++++....|.+ .
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~---~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k---~ 83 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERF---KEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKK---Y 83 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHH---HHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccc---c
Confidence 57888888887766666654322 23333344455665565543 44688899998 999999998754433 2
Q ss_pred EeeecCCChHHHHHHHHH
Q 012346 264 QQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 264 ~~i~G~~~~~~~~~~L~~ 281 (465)
....|..+.+.+.+-+..
T Consensus 84 ~~~~~~~~~~~l~~fi~~ 101 (103)
T cd02982 84 LMPEEELTAESLEEFVED 101 (103)
T ss_pred CCCccccCHHHHHHHHHh
Confidence 233444566666555543
No 115
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=90.61 E-value=4.6 Score=34.84 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=60.3
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCch---------HHHHHHHhCC
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS---------EGFKMSNSLK 242 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~---------Eg~~va~~l~ 242 (465)
-+..+..+.. +..+..+||+..+.+..|..| .|.+.++.++ +.-+|-+|++.. +-..+...|+
T Consensus 11 it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~------~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 11 TTVVRALEAL-DKKETATFFIGRKTCPYCRKF------SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cCHHHHHHHH-HcCCcEEEEEECCCChhHHHH------hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 3444433333 567889999999999888877 4666777765 455777777632 2223445555
Q ss_pred C----CCCCcEEEEecCCCcceeeEEeeecC-CChHHHHHH
Q 012346 243 A----SRYPFCAVVMPAANQRIALLQQVEGP-KSPEEMLMI 278 (465)
Q Consensus 243 ~----~~~P~i~ii~~~~~~~~~vl~~i~G~-~~~~~~~~~ 278 (465)
. ...|+++++-. | +.++++.|. .+.+++.+-
T Consensus 84 i~~~i~~~PT~v~~k~--G---k~v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 84 IPTSFMGTPTFVHITD--G---KQVSVRCGSSTTAQELQDI 119 (122)
T ss_pred CcccCCCCCEEEEEeC--C---eEEEEEeCCCCCHHHHHHH
Confidence 4 45999998875 5 346677784 456655543
No 116
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=90.55 E-value=0.13 Score=52.60 Aligned_cols=44 Identities=27% Similarity=0.256 Sum_probs=39.8
Q ss_pred CCchHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCC
Q 012346 1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (465)
Q Consensus 1 m~~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~ 45 (465)
|+...+.|.+|+.+||.+. ..|+++|.+.+||+|.|...++...
T Consensus 1 ~~~p~~~ls~f~~~t~~se-~~~~~~l~s~~~d~~~a~~~~~~~~ 44 (380)
T KOG2086|consen 1 AAIPLDSLSEFRAVTGPSE-SRARFYLESIYWDREAAHRSELEAF 44 (380)
T ss_pred CCCchhHHHHHhccCCCCc-cccccccccCCCchhhhhhhhcccc
Confidence 6778899999999999877 8999999999999999999987643
No 117
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=90.49 E-value=1 Score=31.80 Aligned_cols=67 Identities=22% Similarity=0.176 Sum_probs=50.5
Q ss_pred EECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 393 VRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 393 iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
+++++|.....++..+.|+.+|...+.......+..|.|..+.+...- ..++.+.++.++..+.+..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPD-----SLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCC-----CCcHHHcCCCCCCEEEEEe
Confidence 677799999999999999999999998765445678999888664322 2344567777777777653
No 118
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=90.47 E-value=2.7 Score=35.47 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=48.6
Q ss_pred CcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeE
Q 012346 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (465)
Q Consensus 186 ~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl 263 (465)
.++++|+++++.+..|..+.. .+.++..+ +..|..+|++.. .+++.|++..+|.+.++-. |. .+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~------~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~~f~~--G~---~v 89 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDS------HLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLPTLLVYKN--GE---LI 89 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHH------HHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCCEEEEEEC--CE---EE
Confidence 489999999999988887643 33333333 455666666543 8899999999999888764 42 45
Q ss_pred Eeeec
Q 012346 264 QQVEG 268 (465)
Q Consensus 264 ~~i~G 268 (465)
.++.|
T Consensus 90 ~~~~G 94 (113)
T cd02957 90 DNIVG 94 (113)
T ss_pred EEEec
Confidence 66666
No 119
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=90.22 E-value=6.2 Score=43.88 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=7.8
Q ss_pred HHHHHHHhcCcEEE
Q 012346 177 DALQRSRSVFKLLF 190 (465)
Q Consensus 177 eAl~~Ak~e~K~Ll 190 (465)
.||..-++++||-+
T Consensus 739 ~aLgL~q~DfkFGl 752 (1259)
T KOG0163|consen 739 QALGLDQNDFKFGL 752 (1259)
T ss_pred HHhCCCcccccccc
Confidence 34444456667665
No 120
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=89.82 E-value=0.45 Score=33.07 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=33.7
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~ 43 (465)
+++|.+.+++.--=+.+..+..|..++||+|.|+...+.
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 578899999988777788999999999999999998764
No 121
>PTZ00102 disulphide isomerase; Provisional
Probab=89.64 E-value=1.5 Score=46.52 Aligned_cols=98 Identities=10% Similarity=0.164 Sum_probs=66.8
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCCc
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPF 248 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P~ 248 (465)
..+|++++ ++.+.+||+++.+.+..|..+...+. .+.+.++. ++.+...|.+. ...+++.|++..||.
T Consensus 39 ~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~~--~~~l~~~~~i~~~Pt 109 (477)
T PTZ00102 39 DSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDATE--EMELAQEFGVRGYPT 109 (477)
T ss_pred hhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECCC--CHHHHHhcCCCcccE
Confidence 34455544 45688999999999888877764431 23333332 35555555443 346788999999999
Q ss_pred EEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 249 i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
+.++.. |.. + ...|..+++.+++.+...+.
T Consensus 110 ~~~~~~--g~~---~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 110 IKFFNK--GNP---V-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEEEEC--Cce---E-EecCCCCHHHHHHHHHHhhC
Confidence 999875 432 2 66798999999888877654
No 122
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=89.39 E-value=1.7 Score=37.18 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=27.5
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHH
Q 012346 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEE 274 (465)
Q Consensus 235 ~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~ 274 (465)
..+++.|++..+|..++|+.. | .++.+..|..+.+.
T Consensus 90 ~~~~~~~~v~~~P~~~~ld~~-G---~v~~~~~G~~~~~~ 125 (127)
T cd03010 90 GRVGIDLGVYGVPETFLIDGD-G---IIRYKHVGPLTPEV 125 (127)
T ss_pred chHHHhcCCCCCCeEEEECCC-c---eEEEEEeccCChHh
Confidence 356778999999999999873 5 36677788877654
No 123
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=89.28 E-value=4.2 Score=34.46 Aligned_cols=75 Identities=7% Similarity=-0.009 Sum_probs=51.6
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcc
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQR 259 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~ 259 (465)
+.++.+..+|+++.+.+..|..+. +.+.++.++ ++.|+..|++. ...+++.|++...|.++++-. |
T Consensus 18 ~i~~~~~vvV~f~a~~c~~C~~~~------p~l~~la~~~~~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk~--G-- 85 (113)
T cd02989 18 IVKSSERVVCHFYHPEFFRCKIMD------KHLEILAKKHLETKFIKVNAEK--APFLVEKLNIKVLPTVILFKN--G-- 85 (113)
T ss_pred HHhCCCcEEEEEECCCCccHHHHH------HHHHHHHHHcCCCEEEEEEccc--CHHHHHHCCCccCCEEEEEEC--C--
Confidence 334568999999999988887654 333444433 46677777654 335889999999999988874 4
Q ss_pred eeeEEeeecC
Q 012346 260 IALLQQVEGP 269 (465)
Q Consensus 260 ~~vl~~i~G~ 269 (465)
.++.++.|.
T Consensus 86 -~~v~~~~g~ 94 (113)
T cd02989 86 -KTVDRIVGF 94 (113)
T ss_pred -EEEEEEECc
Confidence 245566554
No 124
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=89.19 E-value=4.8 Score=34.39 Aligned_cols=93 Identities=14% Similarity=0.135 Sum_probs=64.2
Q ss_pred CCccccCHHHHHHHHHhcCcEEEEEEeCC--CCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCC
Q 012346 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSP--DHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLK 242 (465)
Q Consensus 168 p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~--~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~ 242 (465)
|..-..+|++-+ +.+...+|.++.+ .+.+|..+ .|.+-++.++ .+.|...++++.. .++..|+
T Consensus 13 ~~~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i------~P~leela~e~~~~v~f~kVdid~~~--~la~~f~ 80 (111)
T cd02965 13 PRVDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDV------AVVLPELLKAFPGRFRAAVVGRADEQ--ALAARFG 80 (111)
T ss_pred cccccccHHHHH----hCCCCEEEEecCCcccCcchhhh------HhHHHHHHHHCCCcEEEEEEECCCCH--HHHHHcC
Confidence 555666777666 4455667777776 47787665 3444455443 3446677766554 8899999
Q ss_pred CCCCCcEEEEecCCCcceeeEEeeecCCChHHHHH
Q 012346 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLM 277 (465)
Q Consensus 243 ~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~ 277 (465)
+.+.|+++++-. | ..+.++.|..+.+++..
T Consensus 81 V~sIPTli~fkd--G---k~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 81 VLRTPALLFFRD--G---RYVGVLAGIRDWDEYVA 110 (111)
T ss_pred CCcCCEEEEEEC--C---EEEEEEeCccCHHHHhh
Confidence 999999988874 5 36778889888887753
No 125
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=88.72 E-value=10 Score=32.58 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=46.5
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCCcEEEEec
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMP 254 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~ 254 (465)
..++.+|+++.+.+..|..+. |.+-++-.+ ...|+.+|++... .++..|++...|++.++-.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~------P~le~la~~~~~~v~f~kVDvD~~~--~la~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMD------EVLAKIAEDVSNFAVIYLVDIDEVP--DFNKMYELYDPPTVMFFFR 77 (114)
T ss_pred CCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCceEEEEEECCCCH--HHHHHcCCCCCCEEEEEEC
Confidence 578999999999988887653 333333333 3457888887644 6789999999999999874
No 126
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.68 E-value=12 Score=41.68 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=5.1
Q ss_pred EeecccCchHH
Q 012346 224 SWGGSIRASEG 234 (465)
Q Consensus 224 ~w~~~v~~~Eg 234 (465)
+|-.+.-+.||
T Consensus 234 IW~LsDvd~DG 244 (1118)
T KOG1029|consen 234 IWTLSDVDGDG 244 (1118)
T ss_pred heeeeccCCCC
Confidence 56544444443
No 127
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=88.55 E-value=1.2 Score=36.09 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=43.3
Q ss_pred HHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh----ccceEeecccCc--hHH-------------------
Q 012346 180 QRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRA--SEG------------------- 234 (465)
Q Consensus 180 ~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~----~~fv~w~~~v~~--~Eg------------------- 234 (465)
..+.-.+|+++|++..+.+..|..+. +.+.++.+ .++.++..+++. .|.
T Consensus 13 ~~~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (116)
T cd02966 13 SLSDLKGKVVLVNFWASWCPPCRAEM------PELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPD 86 (116)
T ss_pred ehHHcCCCEEEEEeecccChhHHHHh------HHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCc
Confidence 33444478888888877665554432 23333332 245566666554 222
Q ss_pred HHHHHhCCCCCCCcEEEEecC
Q 012346 235 FKMSNSLKASRYPFCAVVMPA 255 (465)
Q Consensus 235 ~~va~~l~~~~~P~i~ii~~~ 255 (465)
..++..|++..+|.++|+++.
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~ 107 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRD 107 (116)
T ss_pred chHHHhcCcCccceEEEECCC
Confidence 456778899999999999873
No 128
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=88.27 E-value=2.3 Score=44.70 Aligned_cols=99 Identities=12% Similarity=0.182 Sum_probs=66.2
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
.+|++++ ++.++++|+++.+.+..|..+...+ ..+.+.++. ++.+...|.+. ...+++.|++..||.+
T Consensus 9 ~~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 9 DNFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSGYPTL 79 (462)
T ss_pred HHHHHHH----hcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCccccEE
Confidence 3455554 4678999999999888887776433 234444443 25555555443 3578899999999998
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.++.. |.. . +....|..+.+.+.+.+...+.
T Consensus 80 ~~~~~--g~~-~-~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 80 KIFRN--GED-S-VSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEEeC--Ccc-c-eeEecCCCCHHHHHHHHHHhcC
Confidence 88864 432 1 3456788888888887766553
No 129
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=88.22 E-value=14 Score=41.13 Aligned_cols=11 Identities=18% Similarity=-0.034 Sum_probs=6.0
Q ss_pred CCcHHHHHHHH
Q 012346 408 TAVVQLLYDYV 418 (465)
Q Consensus 408 ~~tl~~l~~fv 418 (465)
..+-.+|.|-|
T Consensus 1069 ~wkyaeLRDtI 1079 (1259)
T KOG0163|consen 1069 KWKYAELRDTI 1079 (1259)
T ss_pred cccHHHHHHhh
Confidence 34555566555
No 130
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=87.78 E-value=4.9 Score=46.96 Aligned_cols=11 Identities=0% Similarity=0.063 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 012346 151 EAMEFVAVFER 161 (465)
Q Consensus 151 ~~~~f~~~~~~ 161 (465)
|+..|---+.+
T Consensus 225 DVWSLG~ILYE 235 (1021)
T PTZ00266 225 DMWALGCIIYE 235 (1021)
T ss_pred HHHHHHHHHHH
Confidence 44444333333
No 131
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.72 E-value=6.3 Score=33.30 Aligned_cols=84 Identities=11% Similarity=0.058 Sum_probs=61.7
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
.++......+....|.++|++..+.+.-|... .|-+.++-.+ +.+|+..|++. -..+++.+++...|++.
T Consensus 8 ~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i------~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf~ 79 (106)
T KOG0907|consen 8 SDLDLVLSAAEAGDKLVVVDFYATWCGPCKAI------APKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTFV 79 (106)
T ss_pred hhHHHHHHHhhCCCCeEEEEEECCCCcchhhh------hhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEEE
Confidence 35666677777778999999998777666443 3455555543 68899999988 77789999999999999
Q ss_pred EEecCCCcceeeEEeeecC
Q 012346 251 VVMPAANQRIALLQQVEGP 269 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~ 269 (465)
++-. |+ .+.++.|.
T Consensus 80 f~k~--g~---~~~~~vGa 93 (106)
T KOG0907|consen 80 FYKG--GE---EVDEVVGA 93 (106)
T ss_pred EEEC--CE---EEEEEecC
Confidence 9954 43 34556664
No 132
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.68 E-value=0.17 Score=48.12 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=38.7
Q ss_pred chHHHHHHhHhhhCCCCh--hHHHHHHhhCCCCHHHHHhhhhCCCCC
Q 012346 3 DVADKLAYFQAITGLEDP--DLCTEILQAHDWDLELAISSFTSSNPP 47 (465)
Q Consensus 3 ~~~~~l~qf~~it~~~~~--~~a~~~L~~~~W~le~A~~~~~~~~~~ 47 (465)
++.+.+.||+.++|..-. +.|+|+|+-.+|+|..|++-|++...+
T Consensus 22 dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t~ 68 (244)
T KOG4351|consen 22 DRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDTK 68 (244)
T ss_pred CcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCCc
Confidence 578999999999996432 579999999999999999999997653
No 133
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=87.57 E-value=11 Score=39.51 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=16.8
Q ss_pred EEEEEECC-CCceEEEEecCCCcHH
Q 012346 389 TQVLVRFP-NGERKERRFHSTAVVQ 412 (465)
Q Consensus 389 ~~i~iRlP-~G~r~~rrF~~~~tl~ 412 (465)
.+-++..| +| ++.+||-..+.-.
T Consensus 295 ~~G~l~~PV~G-~il~rFG~~~~gg 318 (420)
T COG4942 295 LRGQLAWPVTG-RILRRFGQADGGG 318 (420)
T ss_pred ccCCcCCCCCC-cHHHHhcccCCCC
Confidence 44566777 66 6999998877665
No 134
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=87.30 E-value=3 Score=36.73 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=48.2
Q ss_pred ceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhhcH
Q 012346 222 FVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNP 288 (465)
Q Consensus 222 fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~~ 288 (465)
+.+..+|++.. -.++..|++..+|.++++-. | ..+.++.|..+.+++.+.|...+++..+
T Consensus 70 v~~akVDiD~~--~~LA~~fgV~siPTLl~Fkd--G---k~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 70 WQVAIADLEQS--EAIGDRFGVFRFPATLVFTG--G---NYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred eEEEEEECCCC--HHHHHHcCCccCCEEEEEEC--C---EEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 56777776644 56788999999999998875 5 3678888999999999999998877543
No 135
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=86.97 E-value=1.9 Score=29.93 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=33.5
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
..+.+.+.+++.-.-+.+.++..|+.+++|+|.||...+.+
T Consensus 2 ~~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 2 NDEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 35677888888665555789999999999999999998764
No 136
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=86.93 E-value=2.2 Score=36.24 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=51.7
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--c-ceEeecccCchHHHHHHHhCCCCCCCc
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--N-FVSWGGSIRASEGFKMSNSLKASRYPF 248 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~-fv~w~~~v~~~Eg~~va~~l~~~~~P~ 248 (465)
..+|++.+. +..|+.+|+++++.+..|..+.. .| +.+.+-+++ + +.+-..|.+......+++.|++..||.
T Consensus 8 ~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~-~~--~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 8 AASFNSALL---GSPSAWLVEFYASWCGHCRAFAP-TW--KKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhH-HH--HHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 345666654 33489999999999888887754 33 234444433 2 444445544445667889999999999
Q ss_pred EEEEec
Q 012346 249 CAVVMP 254 (465)
Q Consensus 249 i~ii~~ 254 (465)
+.++..
T Consensus 82 ~~lf~~ 87 (114)
T cd02992 82 LRYFPP 87 (114)
T ss_pred EEEECC
Confidence 999875
No 137
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=86.80 E-value=4.7 Score=43.04 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=66.8
Q ss_pred ccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCCCCCc
Q 012346 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPF 248 (465)
Q Consensus 170 f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~~~P~ 248 (465)
+-..+|++.+.. +...++.||+++.+.+..|+.+...+ +++.+-+.. ++.|...+++..+...+++.|++..||+
T Consensus 356 L~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~---eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PT 431 (463)
T TIGR00424 356 LSRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASY---LELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPT 431 (463)
T ss_pred CCHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccce
Confidence 344567776643 56799999999999998887775432 344444443 3566667776543333456899999999
Q ss_pred EEEEecCCCcceeeEEeee-cCCChHHHHHHHH
Q 012346 249 CAVVMPAANQRIALLQQVE-GPKSPEEMLMILQ 280 (465)
Q Consensus 249 i~ii~~~~~~~~~vl~~i~-G~~~~~~~~~~L~ 280 (465)
+.++.... .+ .+ ... |.-+.+.|+..++
T Consensus 432 ii~Fk~g~-~~--~~-~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 432 ILFFPKHS-SR--PI-KYPSEKRDVDSLMSFVN 460 (463)
T ss_pred EEEEECCC-CC--ce-eCCCCCCCHHHHHHHHH
Confidence 99987531 11 12 233 4678888776554
No 138
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=85.88 E-value=6.3 Score=35.57 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=50.6
Q ss_pred EEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchH-----------HHHHHHhC---CCCCCCcEEEE
Q 012346 188 LLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASE-----------GFKMSNSL---KASRYPFCAVV 252 (465)
Q Consensus 188 ~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~E-----------g~~va~~l---~~~~~P~i~ii 252 (465)
+.+|++-.+.+.-|.... |.+.++-++ ++.+.+.++++.. +......| ++..+|+.++|
T Consensus 52 ~~lvnFWAsWCppCr~e~------P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 52 YALVFFYQSTCPYCHQFA------PVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred CEEEEEECCCChhHHHHH------HHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 337777777665555542 344444433 3444444444321 11223345 77899999999
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
++..+ .+..++.|.++.+++...+...
T Consensus 126 D~~G~---~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTR---KAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCC---EEEEEeecccCHHHHHHHHHHh
Confidence 98533 2345677999988877766543
No 139
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=84.88 E-value=8.4 Score=34.84 Aligned_cols=50 Identities=10% Similarity=0.230 Sum_probs=31.1
Q ss_pred HHHHhCCCCCCCcEEEEecCCCcceeeEEee-------ecCCChHHHHHHHHHHHHhhc
Q 012346 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQV-------EGPKSPEEMLMILQKVIEESN 287 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i-------~G~~~~~~~~~~L~~~~~~~~ 287 (465)
.+++.|++...|.++||++. | ++.-...+ .+..+.+++.+.|..++...+
T Consensus 100 ~~~~~~~v~~~P~~~lid~~-G-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 100 EVAKAYGAACTPDFFLFDPD-G-KLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHHHHcCCCcCCcEEEECCC-C-eEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 45667888889999999973 4 22211111 123466778888877776543
No 140
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=84.25 E-value=7.9 Score=35.67 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=54.6
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
..|.+++..+. ..++++|+++.+.+..|..+. +.+.++-.+ ++.|..++++.. .++..|++...|+++
T Consensus 71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~------~~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~vPTll 140 (175)
T cd02987 71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALN------SSLLCLAAEYPAVKFCKIRASAT---GASDEFDTDALPALL 140 (175)
T ss_pred HHHHHHHHhcC-CCcEEEEEEECCCCchHHHHH------HHHHHHHHHCCCeEEEEEeccch---hhHHhCCCCCCCEEE
Confidence 44555543322 235999999999998888764 333344433 467777877653 688999999999998
Q ss_pred EEecCCCcceeeEEeeecC
Q 012346 251 VVMPAANQRIALLQQVEGP 269 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~ 269 (465)
++-. | .++.++.|.
T Consensus 141 lyk~--G---~~v~~~vG~ 154 (175)
T cd02987 141 VYKG--G---ELIGNFVRV 154 (175)
T ss_pred EEEC--C---EEEEEEech
Confidence 8874 4 245555553
No 141
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=82.46 E-value=5.7 Score=34.08 Aligned_cols=65 Identities=20% Similarity=0.170 Sum_probs=39.3
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc------cceEeecccCchH----------------------HHH
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE------NFVSWGGSIRASE----------------------GFK 236 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~------~fv~w~~~v~~~E----------------------g~~ 236 (465)
.+|++||++..+.+..|.... +.+.++.++ ++.+++.+++..+ ...
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSR 90 (131)
T ss_pred CCcEEEEEEECCCChHHHHHh------HHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHH
Confidence 467888888877665555433 233333221 3444444443221 235
Q ss_pred HHHhCCCCCCCcEEEEecC
Q 012346 237 MSNSLKASRYPFCAVVMPA 255 (465)
Q Consensus 237 va~~l~~~~~P~i~ii~~~ 255 (465)
+++.|++..+|.++||++.
T Consensus 91 ~~~~~~v~~~P~~~lid~~ 109 (131)
T cd03009 91 LNRTFKIEGIPTLIILDAD 109 (131)
T ss_pred HHHHcCCCCCCEEEEECCC
Confidence 6778999999999999873
No 142
>PTZ00062 glutaredoxin; Provisional
Probab=81.64 E-value=25 Score=33.33 Aligned_cols=80 Identities=14% Similarity=0.217 Sum_probs=55.8
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcc
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQR 259 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~ 259 (465)
.+......++|++.+.+.+|..+. .+ +.++..+ ++.|+.++.+ |.+...|+++++.. |
T Consensus 13 i~~~~g~~vl~f~a~w~~~C~~m~-~v-----l~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~~--g-- 72 (204)
T PTZ00062 13 IESNTGKLVLYVKSSKEPEYEQLM-DV-----CNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQN--S-- 72 (204)
T ss_pred HhcCCCcEEEEEeCCCCcchHHHH-HH-----HHHHHHHCCCcEEEEEccc----------cCcccceEEEEEEC--C--
Confidence 343446789999999999997653 22 3333333 6778888754 99999999999864 4
Q ss_pred eeeEEeeecCCChHHHHHHHHHHH
Q 012346 260 IALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 260 ~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
+++.++.|. ++.++.+.+....
T Consensus 73 -~~i~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 73 -QLINSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred -EEEeeeeCC-CHHHHHHHHHHHc
Confidence 368888875 5777777665443
No 143
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=81.14 E-value=5.6 Score=31.49 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=46.8
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCC---CC---cCeEEEeCCCCcccCCCCccCcccccCCCCCeeEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCL---EV---QNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLF 461 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~---~~---~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ 461 (465)
.|+|.|..++|+++.-..+.+-++.+|..-+-..... +. ..|.|.+ -+...+. .+.||.++|+..+..|.
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~-~~g~~L~---~~~tL~~~gV~dGd~L~ 77 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLAR-AGGRPLD---PDQTLADAGVRDGDVLV 77 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGTEEEE---TTSBCGGGT--TT-EEE
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEe-cCCcccC---CcCcHhHcCCCCCCEEE
Confidence 5899999999889999999999999998887654322 11 1477763 2333454 37799999999999988
Q ss_pred E
Q 012346 462 V 462 (465)
Q Consensus 462 v 462 (465)
+
T Consensus 78 L 78 (79)
T PF08817_consen 78 L 78 (79)
T ss_dssp E
T ss_pred e
Confidence 6
No 144
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=79.46 E-value=4.1 Score=32.24 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=41.0
Q ss_pred cCCCcHHHHHHHHHhcC---CCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 406 HSTAVVQLLYDYVDSLG---CLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 406 ~~~~tl~~l~~fv~~~~---~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
..++||.+|..-|.... ..++..++|+ |-.+.+.+ +.||.+.|+.++++|++
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLI--y~GKiL~D---~~TL~dygI~~gstlhL 72 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLI--HCGRKLKD---DQTLDFYGIQSGSTIHI 72 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEE--eCCcCCCC---CCcHHHcCCCCCCEEEE
Confidence 56899999999998773 2235678888 56777753 67999999999999876
No 145
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=79.16 E-value=21 Score=33.25 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=56.7
Q ss_pred EEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCch-----------HHHHHHHhCCC--CCCCcEEEEecC
Q 012346 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS-----------EGFKMSNSLKA--SRYPFCAVVMPA 255 (465)
Q Consensus 190 lVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~-----------Eg~~va~~l~~--~~~P~i~ii~~~ 255 (465)
+|++....+.-|..+. +.+.++-++ +|.+++.+++.. .+..+...|+. ..+|..+||++.
T Consensus 73 lV~FwaswCp~C~~e~------P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~ 146 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD------PVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN 146 (181)
T ss_pred EEEEECCCCHhHHHHH------HHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC
Confidence 5566666665555543 445555554 677777776533 12335667884 699999999984
Q ss_pred CCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 256 ANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 256 ~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
| + .+...+.|.++.+++..++...+..
T Consensus 147 -G-~-i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 147 -T-L-EALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred -C-c-EEEEEEECCCCHHHHHHHHHHHHhh
Confidence 3 1 2234577999999988888776643
No 146
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=78.78 E-value=17 Score=29.21 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=51.7
Q ss_pred EEEEEECCC-CceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCc--c-cCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPN-GERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRV--V-YSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~-G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~--~-~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
++|.|.-+. +....|||..+.||..|..=+...-..++..-+|.- |..+ . -.-++...+|...|+.++..|+|.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l-~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQL-FDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEE-EcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 455666543 345899999999999999998877554555555631 2222 1 112245889999999999999886
No 147
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=78.70 E-value=9.3 Score=32.95 Aligned_cols=71 Identities=24% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHh---hc---cceEeecccCch--------------------
Q 012346 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV---NE---NFVSWGGSIRAS-------------------- 232 (465)
Q Consensus 179 l~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l---~~---~fv~w~~~v~~~-------------------- 232 (465)
+..+.-.+|.+||++..+.+..|..... .+.++. .+ ++.+.+.+++..
T Consensus 10 v~l~~~~Gk~vll~F~atwC~~C~~~~p------~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 83 (132)
T cd02964 10 VPVSALEGKTVGLYFSASWCPPCRAFTP------KLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFE 83 (132)
T ss_pred ccHHHhCCCEEEEEEECCCCchHHHHHH------HHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccC
Confidence 3344445788888888877766665432 222222 22 333333333321
Q ss_pred ---HHHHHHHhCCCCCCCcEEEEecC
Q 012346 233 ---EGFKMSNSLKASRYPFCAVVMPA 255 (465)
Q Consensus 233 ---Eg~~va~~l~~~~~P~i~ii~~~ 255 (465)
....+++.|++..+|.++||+..
T Consensus 84 d~~~~~~~~~~~~v~~iPt~~lid~~ 109 (132)
T cd02964 84 DEELRELLEKQFKVEGIPTLVVLKPD 109 (132)
T ss_pred cHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 12356778999999999999863
No 148
>PLN02309 5'-adenylylsulfate reductase
Probab=77.90 E-value=15 Score=39.33 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCchHHHHHHH-hCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEGFKMSN-SLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~Eg~~va~-~l~~~~~P~i~ 250 (465)
.+|++.+. .+...|..||+++.+.+..|+.+... | +.+.+-+. .++.|...|++..+ ..+++ .|++..||++.
T Consensus 353 ~nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~-~--e~LA~~~~~~~V~f~kVD~d~~~-~~la~~~~~I~~~PTil 427 (457)
T PLN02309 353 AGIENLLK-LENRKEPWLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSGVKVAKFRADGDQ-KEFAKQELQLGSFPTIL 427 (457)
T ss_pred HHHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCeEEEEEECCCcc-hHHHHhhCCCceeeEEE
Confidence 34554443 34678999999999999888877543 2 23444343 35778888776222 24554 69999999999
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
++..... + .+..-.|.-+.+.|++-++.
T Consensus 428 ~f~~g~~-~--~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 428 LFPKNSS-R--PIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred EEeCCCC-C--eeecCCCCcCHHHHHHHHHH
Confidence 9975321 1 22222235677777766543
No 149
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=77.83 E-value=5.8 Score=33.11 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=45.0
Q ss_pred EecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 404 RFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 404 rF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
.-++++||.+|..-|.......+..-.|+.+ -+.+.+ ...||.+.||.|.+.|++-.
T Consensus 20 ~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d--G~~L~D--DsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 20 LVSANQTLKELKIQIMHAFSVAPFDQNLSID--GKILSD--DCATLGTLGVIPESVILLKA 76 (107)
T ss_pred EeCccccHHHHHHHHHHHhcCCcccceeeec--Cceecc--CCccHHhcCCCCCCEEEEEe
Confidence 3678899999999998876656666678887 445543 48999999999999998754
No 150
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=77.81 E-value=12 Score=29.87 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=48.6
Q ss_pred EEEEEECCCCce--EEEEecCCCcHHHHHHHHHhcCC--CCCcCeEEEeCCCCcccCCCCccCcccccC--CCCCeeEE
Q 012346 389 TQVLVRFPNGER--KERRFHSTAVVQLLYDYVDSLGC--LEVQNYSLVSNFPRVVYSTDKFSLSLKEAG--LHPQASLF 461 (465)
Q Consensus 389 ~~i~iRlP~G~r--~~rrF~~~~tl~~l~~fv~~~~~--~~~~~f~L~t~fPr~~~~~~~~~~TL~e~g--L~p~~~L~ 461 (465)
++|.||.|||++ +.-.+..++||.+|-.-|..... .+...-+|+- -.|++.+ +.||.+.+ +..+-+++
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy--~GKiLkD---~~tL~~~~~~~~~~~tiH 75 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY--SGKLLPD---HLKLRDVLRKQDEYHMVH 75 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEE--cCeeccc---hhhHHHHhhcccCCceEE
Confidence 579999999998 55566899999999999987532 2345666664 4667753 57899875 55444444
No 151
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=77.15 E-value=8.6 Score=29.55 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=39.5
Q ss_pred CCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEE
Q 012346 395 FPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLF 461 (465)
Q Consensus 395 lP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ 461 (465)
.+||.|..-+..++++|.+|..-+-.+..+++..|.|..+ ++.+ |.+.++.=+||.++|.|-
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~--~k~l---dlslp~R~snL~n~akLe 64 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHN--NKPL---DLSLPFRLSNLPNNAKLE 64 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEET--TEEE---SSS-BHHHH---SS-EEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEEC--CEEe---ccccceeecCCCCCCEEe
Confidence 4789999999999999999998876665566778999765 5666 347789999999998874
No 152
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=76.90 E-value=16 Score=32.94 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCchHHHHHHHhCCCCC------C
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEGFKMSNSLKASR------Y 246 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~Eg~~va~~l~~~~------~ 246 (465)
+|++.+.. ...+..+|+++.+.+..|..+... | +++.+-.+ .++.|...|++... .+++.|++.. +
T Consensus 37 ~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~-l--~~la~~~~~~~v~f~~VDvd~~~--~la~~~~V~~~~~v~~~ 109 (152)
T cd02962 37 TLEEELER--DKRVTWLVEFFTTWSPECVNFAPV-F--AELSLKYNNNNLKFGKIDIGRFP--NVAEKFRVSTSPLSKQL 109 (152)
T ss_pred HHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHcccCCeEEEEEECCCCH--HHHHHcCceecCCcCCC
Confidence 34444432 346799999999988888776531 1 12222222 25778888877654 5678888877 9
Q ss_pred CcEEEEecCCCcceeeEEeeec
Q 012346 247 PFCAVVMPAANQRIALLQQVEG 268 (465)
Q Consensus 247 P~i~ii~~~~~~~~~vl~~i~G 268 (465)
|++.+... | +.+.++.|
T Consensus 110 PT~ilf~~--G---k~v~r~~G 126 (152)
T cd02962 110 PTIILFQG--G---KEVARRPY 126 (152)
T ss_pred CEEEEEEC--C---EEEEEEec
Confidence 99888763 4 23445554
No 153
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=76.37 E-value=9 Score=29.93 Aligned_cols=69 Identities=20% Similarity=0.096 Sum_probs=45.6
Q ss_pred EECCCCceEEEEecCCCcHHHHHHHHHhcCCC-CCcCeEEEe-CCCCcccCCCCccCcccccCCC--CCeeEE
Q 012346 393 VRFPNGERKERRFHSTAVVQLLYDYVDSLGCL-EVQNYSLVS-NFPRVVYSTDKFSLSLKEAGLH--PQASLF 461 (465)
Q Consensus 393 iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~-~~~~f~L~t-~fPr~~~~~~~~~~TL~e~gL~--p~~~L~ 461 (465)
|+||||+..+-....++|.++|++-|.....+ +..-|.|.- .-+.....-.+.+++|.+..-. +.-.|.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~ 73 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLY 73 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEE
Confidence 68999999999999999999999999775443 345677765 1111111112357788876644 444444
No 154
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=75.75 E-value=29 Score=29.74 Aligned_cols=60 Identities=8% Similarity=0.004 Sum_probs=34.9
Q ss_pred HHHHHhhccceEeecccCchHHHHHHHhCCCCCC---------CcEEEEecCCCcceeeEEeeecCCChHHHHHH
Q 012346 213 VLAAFVNENFVSWGGSIRASEGFKMSNSLKASRY---------PFCAVVMPAANQRIALLQQVEGPKSPEEMLMI 278 (465)
Q Consensus 213 ~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~---------P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~ 278 (465)
.+.+|++++-+-|..- .+++ ..+++.|++..+ |..+||++. | .++....|..+.+.+-+.
T Consensus 70 ~~~~~~~~~~~~~~~l-~D~~-~~~~~~~gv~~~~~~~~~~~~p~~~lid~~-G---~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 70 SHAKFAEKYGLPFPLL-SDPD-GKLAKAYGVWGEKKKKYMGIERSTFLIDPD-G---KIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred HHHHHHHHhCCCceEE-ECCc-cHHHHHhCCccccccccCCcceeEEEECCC-C---EEEEEEecCCccchHHHH
Confidence 4455555432223221 2233 356777888777 899999873 4 466677787755555443
No 155
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=75.66 E-value=68 Score=35.53 Aligned_cols=16 Identities=31% Similarity=0.175 Sum_probs=8.8
Q ss_pred ccccCCCCCeeEEEEe
Q 012346 449 LKEAGLHPQASLFVEL 464 (465)
Q Consensus 449 L~e~gL~p~~~L~ve~ 464 (465)
...+.+..++.+.|+.
T Consensus 456 ~~~adf~~sa~kpve~ 471 (811)
T KOG4364|consen 456 CEEADFDGSACKPVES 471 (811)
T ss_pred ceecccccccceeecc
Confidence 3455555566666653
No 156
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=75.64 E-value=97 Score=31.45 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=12.4
Q ss_pred hHHHhhcCCCHHHHHHhhc
Q 012346 202 PAFCEGTLCNEVLAAFVNE 220 (465)
Q Consensus 202 ~~f~r~~l~~~~v~~~l~~ 220 (465)
..+...+|+ +.+++.|+.
T Consensus 170 ~e~~~~il~-~~~~~~l~~ 187 (321)
T PF07946_consen 170 NEVTDFILT-PELIKALNK 187 (321)
T ss_pred HhHHHHHhC-hHHHHHHHh
Confidence 455555554 889999985
No 157
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=75.16 E-value=55 Score=30.59 Aligned_cols=80 Identities=10% Similarity=0.034 Sum_probs=50.6
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
.+|.+.+..|. ..++++|.++.+.+..|..+. +.+.++-.. +.-|..++++. .+..|++...|+++
T Consensus 90 ~~f~~eV~~as-~~~~VVV~Fya~wc~~C~~m~------~~l~~LA~k~~~vkFvkI~ad~-----~~~~~~i~~lPTll 157 (192)
T cd02988 90 PDYVREVTEAS-KDTWVVVHLYKDGIPLCRLLN------QHLSELARKFPDTKFVKIISTQ-----CIPNYPDKNLPTIL 157 (192)
T ss_pred HHHHHHHHhcC-CCCEEEEEEECCCCchHHHHH------HHHHHHHHHCCCCEEEEEEhHH-----hHhhCCCCCCCEEE
Confidence 34444443322 236999999999888887764 233333332 35566666642 25789999999999
Q ss_pred EEecCCCcceeeEEeeecC
Q 012346 251 VVMPAANQRIALLQQVEGP 269 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~ 269 (465)
++-. | .++.++.|.
T Consensus 158 iyk~--G---~~v~~ivG~ 171 (192)
T cd02988 158 VYRN--G---DIVKQFIGL 171 (192)
T ss_pred EEEC--C---EEEEEEeCc
Confidence 8874 4 345666663
No 158
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.99 E-value=24 Score=35.60 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=37.5
Q ss_pred CCCCCCCcEEEEecCCCcceeeEEeeecCCChHH----HHHHHHHHHHhhcHHHHHhhHHHHHH
Q 012346 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEE----MLMILQKVIEESNPALLQARLDAEER 300 (465)
Q Consensus 241 l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~----~~~~L~~~~~~~~~~L~~~r~e~~er 300 (465)
|+..++|.+.+++-..+.+-.-|. .-|.++.++ |+..|..++..+.+.+++.+.++.+.
T Consensus 73 ~n~d~~p~~G~lDv~GnDr~~~W~-~LG~~sre~AM~~FV~Lldr~C~~F~~yia~~k~~kde~ 135 (469)
T KOG3878|consen 73 FNTDRAPALGVLDVIGNDRQQHWQ-LLGEISREQAMEGFVDLLDRMCSAFRPYIAAVKQDKDET 135 (469)
T ss_pred CCcccCcccceeecccChHHHHHH-HHhcccHHHHHHHHHHHHHhcchhhhhHHHHhhhhhhhH
Confidence 556788999888864333322332 226666654 55556666777888888888776554
No 159
>PTZ00102 disulphide isomerase; Provisional
Probab=74.72 E-value=7.4 Score=41.27 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=66.9
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..+|.+.+ .+..|..||+++++.+..|..+.. +|. .+.+... .++++...|.+..+ ..+..+++..||.+
T Consensus 364 ~~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~Pt~ 435 (477)
T PTZ00102 364 GNTFEEIV---FKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFPTI 435 (477)
T ss_pred ccchHHHH---hcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccCeE
Confidence 34566554 466899999999999988877742 332 2222333 24556656655433 24667889999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.++.. |.. +..+..|..+.+.+.+.|.....
T Consensus 436 ~~~~~--~~~--~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 436 LFVKA--GER--TPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred EEEEC--CCc--ceeEecCcCCHHHHHHHHHHcCC
Confidence 99875 332 23457799999988888776554
No 160
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=73.64 E-value=52 Score=37.95 Aligned_cols=11 Identities=18% Similarity=0.105 Sum_probs=8.0
Q ss_pred cccCHHHHHHH
Q 012346 171 VSEGFMDALQR 181 (465)
Q Consensus 171 ~~gs~~eAl~~ 181 (465)
+.|.|.+|+..
T Consensus 658 ~kg~~~~A~dI 668 (1018)
T KOG2002|consen 658 EKGRFSEARDI 668 (1018)
T ss_pred hccCchHHHHH
Confidence 67788888763
No 161
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=73.39 E-value=37 Score=26.01 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=47.1
Q ss_pred EEEEeCCCCCCchHHHhhcCCCHHHHHHh---hccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEee
Q 012346 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFV---NENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQV 266 (465)
Q Consensus 190 lVyL~~~~~~~s~~f~r~~l~~~~v~~~l---~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i 266 (465)
++.++++.+..|..... .+.++. +.++-+...|++.. ...++.|++..+|.+.+ . |. .++
T Consensus 3 v~~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~vPt~~~-~---g~-----~~~ 65 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKR------VVEEVAKEMGDAVEVEYINVMEN--PQKAMEYGIMAVPAIVI-N---GD-----VEF 65 (82)
T ss_pred EEEEECCCCcchHHHHH------HHHHHHHHhcCceEEEEEeCccC--HHHHHHcCCccCCEEEE-C---CE-----EEE
Confidence 34556677766665542 222332 23455666666532 34567799999999875 3 32 256
Q ss_pred ecCCChHHHHHHHHHH
Q 012346 267 EGPKSPEEMLMILQKV 282 (465)
Q Consensus 267 ~G~~~~~~~~~~L~~~ 282 (465)
.|..+.+++.+.|..+
T Consensus 66 ~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 66 IGAPTKEELVEAIKKR 81 (82)
T ss_pred ecCCCHHHHHHHHHhh
Confidence 6888999888877654
No 162
>PLN02560 enoyl-CoA reductase
Probab=73.39 E-value=16 Score=37.04 Aligned_cols=72 Identities=19% Similarity=0.072 Sum_probs=50.5
Q ss_pred EEEEECCCCceE---EEEecCCCcHHHHHHHHHhcCC-CCCcCeEEEeC----CCCcccCCCCccCcccccCCCCCeeEE
Q 012346 390 QVLVRFPNGERK---ERRFHSTAVVQLLYDYVDSLGC-LEVQNYSLVSN----FPRVVYSTDKFSLSLKEAGLHPQASLF 461 (465)
Q Consensus 390 ~i~iRlP~G~r~---~rrF~~~~tl~~l~~fv~~~~~-~~~~~f~L~t~----fPr~~~~~~~~~~TL~e~gL~p~~~L~ 461 (465)
.|.|+..+|+.+ .-....++|+.+|..-+..... ..+..-+|.-. =|+...-. .++||+|.|+..+++|+
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~--d~ktL~d~gv~~gstLy 79 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD--DSKSLKDYGLGDGGTVV 79 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC--CCCCHHhcCCCCCceEE
Confidence 467788889876 4678899999999999987642 23455566532 12222222 36799999999999998
Q ss_pred EE
Q 012346 462 VE 463 (465)
Q Consensus 462 ve 463 (465)
|.
T Consensus 80 ~k 81 (308)
T PLN02560 80 FK 81 (308)
T ss_pred EE
Confidence 86
No 163
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=72.94 E-value=19 Score=39.04 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=34.9
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHH
Q 012346 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 235 ~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~ 280 (465)
..+++.|++..+|..+||++. | .++.++.|..+.+++...|+
T Consensus 129 ~~lak~fgV~giPTt~IIDkd-G---kIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKD-G---DVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCC-C---eEEEEEeCCCCHHHHHHHHH
Confidence 357788999999999999973 4 47788899999988877776
No 164
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=72.85 E-value=20 Score=30.93 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=44.0
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcC-CCHHHHHHhhc---cceEeecccCchH-----HHHHHHhCCCC-CCCcEEEEe
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTL-CNEVLAAFVNE---NFVSWGGSIRASE-----GFKMSNSLKAS-RYPFCAVVM 253 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l-~~~~v~~~l~~---~fv~w~~~v~~~E-----g~~va~~l~~~-~~P~i~ii~ 253 (465)
.+++++|+++.+...+-+.||..-- ..|.+.++..+ +..|+.++++... ...++..+++. ..|+++++.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~ 98 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWK 98 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEc
Confidence 4689999999843322223332111 13455555543 6788999987643 34567788887 999999994
No 165
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=72.33 E-value=50 Score=36.49 Aligned_cols=11 Identities=45% Similarity=0.597 Sum_probs=4.8
Q ss_pred HHHHHHHHHHh
Q 012346 275 MLMILQKVIEE 285 (465)
Q Consensus 275 ~~~~L~~~~~~ 285 (465)
+...+...+.+
T Consensus 248 ~~KQ~rk~meE 258 (811)
T KOG4364|consen 248 LLKQLRKNMEE 258 (811)
T ss_pred HHHHHHHhHHH
Confidence 33445544433
No 166
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=72.25 E-value=40 Score=31.38 Aligned_cols=92 Identities=8% Similarity=0.008 Sum_probs=49.4
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHH-----------------------HHHHh
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF-----------------------KMSNS 240 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~-----------------------~va~~ 240 (465)
.+||++++++ ...+.-|..=...+ ++...+|-+.++.+++.+.++.+.. .+++.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 5689999888 44444444422221 2223334345778888888776541 34455
Q ss_pred CCC----CCC--CcEEEEecCCCcceeeE--EeeecCCChHHHHHHHH
Q 012346 241 LKA----SRY--PFCAVVMPAANQRIALL--QQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 241 l~~----~~~--P~i~ii~~~~~~~~~vl--~~i~G~~~~~~~~~~L~ 280 (465)
|++ ... |..+||++. | ++.-. .......+.++++..|.
T Consensus 108 ygv~~~~~g~~~r~tfIID~~-G-~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQ-G-IIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred cCCCcccCCceeeEEEEECCC-C-EEEEEEEeCCCCCCCHHHHHHHHH
Confidence 655 233 778888763 3 21111 11111236777777664
No 167
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=72.24 E-value=22 Score=39.99 Aligned_cols=7 Identities=14% Similarity=0.340 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 012346 277 MILQKVI 283 (465)
Q Consensus 277 ~~L~~~~ 283 (465)
..++.++
T Consensus 217 ~~~qe~L 223 (1064)
T KOG1144|consen 217 RAMQEAL 223 (1064)
T ss_pred HHHHHHH
Confidence 3333333
No 168
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=70.74 E-value=21 Score=30.37 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=20.5
Q ss_pred HHHHhCCCCCCCcEEEEecCCCcceeeEEeeec
Q 012346 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEG 268 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G 268 (465)
.++..|++..+|..+||+.. | .++.++.|
T Consensus 96 ~~~~~~~v~~~P~~~vid~~-G---~v~~~~~G 124 (126)
T cd03012 96 ATWRAYGNQYWPALYLIDPT-G---NVRHVHFG 124 (126)
T ss_pred HHHHHhCCCcCCeEEEECCC-C---cEEEEEec
Confidence 45667888899999999873 4 35555555
No 169
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=70.58 E-value=38 Score=31.99 Aligned_cols=89 Identities=8% Similarity=0.023 Sum_probs=55.3
Q ss_pred cCcEEEEEEeC--CCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 185 VFKLLFVYLHS--PDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 185 e~K~LlVyL~~--~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
..+-++++.++ +.+..|..+. +-+.++-.. ++-+--++++..+...++..|++..+|+++++.. |.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~------p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~--g~-- 88 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETE------QLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE--GK-- 88 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHH------HHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeC--Ce--
Confidence 34555555552 4555665543 222222222 2334456666667889999999999999998875 42
Q ss_pred eeEEeeecCCChHHHHHHHHHHH
Q 012346 261 ALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 261 ~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.+..+..|..+.+++.+.|...+
T Consensus 89 ~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 89 DGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred eeEEEEeecCCHHHHHHHHHHHH
Confidence 12247778888888777776554
No 170
>PRK15000 peroxidase; Provisional
Probab=70.00 E-value=41 Score=31.59 Aligned_cols=47 Identities=11% Similarity=-0.047 Sum_probs=26.5
Q ss_pred cCcEEEEEEeCC-CCCCchHHHhhcCCCHHHHHHhhccceEeecccCchH
Q 012346 185 VFKLLFVYLHSP-DHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE 233 (465)
Q Consensus 185 e~K~LlVyL~~~-~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~E 233 (465)
.+||++|+++.. -+.-|..=+..+ +....+|-+.++.++++++++.+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~~g~~vigvS~D~~~ 80 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQKRGVEVVGVSFDSEF 80 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHH
Confidence 578999998863 234444422221 12222333347888888887654
No 171
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=69.69 E-value=65 Score=37.22 Aligned_cols=7 Identities=43% Similarity=0.477 Sum_probs=2.9
Q ss_pred ChHHHHH
Q 012346 271 SPEEMLM 277 (465)
Q Consensus 271 ~~~~~~~ 277 (465)
+.+++..
T Consensus 774 t~eev~~ 780 (1018)
T KOG2002|consen 774 TLEEVLE 780 (1018)
T ss_pred cHHHHHH
Confidence 4444433
No 172
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=69.55 E-value=29 Score=27.62 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=36.3
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhcc-ceEeecccCchHHHHHHHhCCCCCCCcEEEEecC
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNEN-FVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPA 255 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~-fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~ 255 (465)
..++-+|+++.++. .+...++++.+ +-.....+.+.....+.+.|++..+|.++||++.
T Consensus 33 ~~~v~~v~Vs~d~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~ 92 (95)
T PF13905_consen 33 KDDVEFVFVSLDED------------EEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPD 92 (95)
T ss_dssp TTTEEEEEEE-SSS------------HHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETT
T ss_pred CCCEEEEEEEeCCC------------HHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCC
Confidence 45666777776421 23445667654 2222223444556678899999999999999973
No 173
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=69.21 E-value=17 Score=28.57 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=41.3
Q ss_pred cCCCcHHHHHHHHHhcC-CCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 406 HSTAVVQLLYDYVDSLG-CLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 406 ~~~~tl~~l~~fv~~~~-~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..+.|+.+|+..+...- ........|.-.+..+++.. +.||.+.|+..+.+|+|.
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d---~~tL~~~gv~~g~~lyvK 75 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKD---DDTLVDLGVGAGATLYVR 75 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCC---cccHhhcCCCCCCEEEEe
Confidence 56689999999997653 22345666766777777753 558999999989888875
No 174
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=69.16 E-value=17 Score=32.49 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=30.1
Q ss_pred HHHHHHhhccceEeec-ccCchHHHHHHHhCCCCCCCcEEEEecCCC
Q 012346 212 EVLAAFVNENFVSWGG-SIRASEGFKMSNSLKASRYPFCAVVMPAAN 257 (465)
Q Consensus 212 ~~v~~~l~~~fv~w~~-~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~ 257 (465)
+.+.+|+++.-+-|.. ...+..+..++..|++..+|+.+||++. |
T Consensus 78 ~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~-G 123 (146)
T cd03008 78 QQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPD-G 123 (146)
T ss_pred HHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCC-C
Confidence 3466778765434422 2233334577889999999999999984 5
No 175
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=68.05 E-value=1.1e+02 Score=34.92 Aligned_cols=14 Identities=7% Similarity=-0.163 Sum_probs=7.0
Q ss_pred cCHHHHHHHHHhcC
Q 012346 173 EGFMDALQRSRSVF 186 (465)
Q Consensus 173 gs~~eAl~~Ak~e~ 186 (465)
+.+.-.+-.|-++.
T Consensus 463 ~~lEk~~v~a~k~~ 476 (988)
T KOG2072|consen 463 FELEKLLVEAAKHN 476 (988)
T ss_pred HHHHHHHHHHHhcc
Confidence 34555555554444
No 176
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=67.60 E-value=45 Score=30.14 Aligned_cols=49 Identities=14% Similarity=-0.004 Sum_probs=23.1
Q ss_pred HHhcCcEEEEEEeC-CCCCCchHHHhhcCCCHHHHHHhhccceEeecccCch
Q 012346 182 SRSVFKLLFVYLHS-PDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS 232 (465)
Q Consensus 182 Ak~e~K~LlVyL~~-~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~ 232 (465)
+.-.+|+++|++.. ..+..|..-...+ +....+|=+.++.+++.++++.
T Consensus 25 ~~~~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~~~v~vv~Is~d~~ 74 (173)
T cd03015 25 SDYKGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKKLNAEVLGVSTDSH 74 (173)
T ss_pred HHhCCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEecCCH
Confidence 33346888888873 3344454433221 1111222223566666665543
No 177
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=67.22 E-value=29 Score=31.18 Aligned_cols=104 Identities=14% Similarity=0.074 Sum_probs=52.6
Q ss_pred CCccccCHHHHHHHHHhcCcE-EEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCC--
Q 012346 168 PNFVSEGFMDALQRSRSVFKL-LFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKAS-- 244 (465)
Q Consensus 168 p~f~~gs~~eAl~~Ak~e~K~-LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~-- 244 (465)
|.+-.-+-..+-. -....+. +++++.+.+....+.+...+ ..+..-.+..++|--+|.. ..-++.+.|+++
T Consensus 77 P~v~~~t~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~ 150 (184)
T PF13848_consen 77 PLVPELTPENFEK-LFSSPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDED 150 (184)
T ss_dssp TSCEEESTTHHHH-HHSTSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTS
T ss_pred ccccccchhhHHH-HhcCCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCc
Confidence 5453333333333 3334444 55555443333344443222 2232222345555545544 223356678876
Q ss_pred CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHH
Q 012346 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 245 ~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~ 280 (465)
.+|.++|+...++. .... . .|.++++.+..-|+
T Consensus 151 ~~P~~vi~~~~~~~-~~~~-~-~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 151 DLPALVIFDSNKGK-YYYL-P-EGEITPESIEKFLN 183 (184)
T ss_dssp SSSEEEEEETTTSE-EEE----SSCGCHHHHHHHHH
T ss_pred cCCEEEEEECCCCc-EEcC-C-CCCCCHHHHHHHhc
Confidence 99999999976552 2222 2 67888877665543
No 178
>PRK13190 putative peroxiredoxin; Provisional
Probab=65.35 E-value=49 Score=31.06 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=22.6
Q ss_pred HHHHhCCCC------CCCcEEEEecCCCccee--eEEeeecCCChHHHHHHHHH
Q 012346 236 KMSNSLKAS------RYPFCAVVMPAANQRIA--LLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 236 ~va~~l~~~------~~P~i~ii~~~~~~~~~--vl~~i~G~~~~~~~~~~L~~ 281 (465)
.+++.|++. .+|..+||++. | ++. .+.-..+..+.++++..|..
T Consensus 101 ~ia~~ygv~~~~~g~~~p~~fiId~~-G-~I~~~~~~~~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 101 ELAREYNLIDENSGATVRGVFIIDPN-Q-IVRWMIYYPAETGRNIDEIIRITKA 152 (202)
T ss_pred HHHHHcCCccccCCcEEeEEEEECCC-C-EEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 344556552 46777777763 3 221 11111233467777766654
No 179
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=64.95 E-value=18 Score=37.38 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=51.1
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHH----HHHHhcCCCCCcCeEEEeCCC-C-cccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLY----DYVDSLGCLEVQNYSLVSNFP-R-VVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~----~fv~~~~~~~~~~f~L~t~fP-r-~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
-++||-++|.+ .-.|..+|++..|- .|++.. ..++.+.+.++=- . ..++.. .+.|+.|+||..+.+|+++
T Consensus 2 i~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n--~~~e~~svc~~p~~qG~~~s~l-~dqt~~dlGL~hGqmLyl~ 77 (571)
T COG5100 2 IFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVN--YSPEQISVCSAPDGQGEIFSLL-KDQTPDDLGLRHGQMLYLE 77 (571)
T ss_pred eEEEecCCCce-eeeccccchhhhhhHHHHhhhccC--CCccceEEEeCCCCCceeeecc-cccChhhhccccCcEEEEE
Confidence 37899999974 55788999987554 444433 2467888877633 1 234433 4899999999999999998
Q ss_pred e
Q 012346 464 L 464 (465)
Q Consensus 464 ~ 464 (465)
.
T Consensus 78 y 78 (571)
T COG5100 78 Y 78 (571)
T ss_pred e
Confidence 5
No 180
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=64.51 E-value=79 Score=29.21 Aligned_cols=21 Identities=5% Similarity=0.324 Sum_probs=16.9
Q ss_pred HHHHhCCCCCCCcEEEEecCCC
Q 012346 236 KMSNSLKASRYPFCAVVMPAAN 257 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~ 257 (465)
.+++.|++...|+.++|++. |
T Consensus 137 ~i~~~y~v~~~P~~~lID~~-G 157 (189)
T TIGR02661 137 EIGMAFQVGKIPYGVLLDQD-G 157 (189)
T ss_pred HHHHhccCCccceEEEECCC-C
Confidence 45667889999999999974 5
No 181
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=63.83 E-value=42 Score=28.82 Aligned_cols=92 Identities=13% Similarity=0.214 Sum_probs=57.3
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeC--CCCC---CchHHHhhcCCCHHHHHHhh--ccceEeecccCc---hHHHHHHHhCC
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHS--PDHP---DTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRA---SEGFKMSNSLK 242 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~--~~~~---~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~---~Eg~~va~~l~ 242 (465)
.+|++++ ++.+++||-+.. |.+. .|..+.. ++-. ..+++=.+|.++ .+...++..|+
T Consensus 9 ~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~---------e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 9 VTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAE---------SSASATDDLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred hhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHH---------HHHhhcCceEEEEEecccccchhhHHHHHHhC
Confidence 3555544 567889999998 6554 2222221 2211 135666677654 45578999999
Q ss_pred CC--CCCcEEEEecCCCcceeeEEeeecC-CChHHHHHHHH
Q 012346 243 AS--RYPFCAVVMPAANQRIALLQQVEGP-KSPEEMLMILQ 280 (465)
Q Consensus 243 ~~--~~P~i~ii~~~~~~~~~vl~~i~G~-~~~~~~~~~L~ 280 (465)
+. .||.+.+......... ..-.|. .+.+.|++.+.
T Consensus 76 I~~~gyPTl~lF~~g~~~~~---~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 76 LDKESYPVIYLFHGGDFENP---VPYSGADVTVDALQRFLK 113 (116)
T ss_pred CCcCCCCEEEEEeCCCcCCC---ccCCCCcccHHHHHHHHH
Confidence 99 9999998875211111 234575 88888887654
No 182
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=63.15 E-value=27 Score=36.57 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=66.0
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYP 247 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P 247 (465)
-..+|++.+. +..+..||+++.+.+..|..+...+ ..+.+.++. ++.+...|++..+ +.. +++..||
T Consensus 352 ~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~i~~~~id~~~n~---~~~-~~i~~~P 421 (462)
T TIGR01130 352 VGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIY---EELAEKYKDAESDVVIAKMDATAND---VPP-FEVEGFP 421 (462)
T ss_pred eCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhhcCCCcEEEEEEECCCCc---cCC-CCccccC
Confidence 3456777653 4579999999999988887775432 345555555 6777778876544 333 8899999
Q ss_pred cEEEEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 248 ~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
.+.+... |.+. ......|..+.+.++..|..
T Consensus 422 t~~~~~~--~~~~-~~~~~~g~~~~~~l~~~l~~ 452 (462)
T TIGR01130 422 TIKFVPA--GKKS-EPVPYDGDRTLEDFSKFIAK 452 (462)
T ss_pred EEEEEeC--CCCc-CceEecCcCCHHHHHHHHHh
Confidence 9999864 3221 12245677788877776654
No 183
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=62.14 E-value=71 Score=29.47 Aligned_cols=47 Identities=11% Similarity=-0.067 Sum_probs=24.3
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE 233 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~E 233 (465)
.+|+++||+. ...+.-|..=+..+ ++...+|-+.++.+++.++++.+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~~gv~vi~VS~D~~~ 77 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKKLGVEVYSVSTDTHF 77 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHhcCCcEEEEeCCCHH
Confidence 4678888887 44444444322211 11112222346777777776643
No 184
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.75 E-value=75 Score=30.91 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=6.2
Q ss_pred cHHHHHHHHHhc
Q 012346 410 VVQLLYDYVDSL 421 (465)
Q Consensus 410 tl~~l~~fv~~~ 421 (465)
-|.+..+||...
T Consensus 201 ll~eFv~YIk~n 212 (299)
T KOG3054|consen 201 LLSEFVEYIKKN 212 (299)
T ss_pred HHHHHHHHHHhc
Confidence 345555555443
No 185
>PRK13189 peroxiredoxin; Provisional
Probab=61.17 E-value=57 Score=31.16 Aligned_cols=47 Identities=17% Similarity=0.018 Sum_probs=22.3
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE 233 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~E 233 (465)
.+||++++.+ .+.++-|..-...+ +....+|-+.++.++++++++..
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l--~~~~~ef~~~~v~VigvS~D~~~ 81 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAF--QKRYDEFRELNTELIGLSIDQVF 81 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHH
Confidence 4677766555 33344444332221 12222333346667777766544
No 186
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=60.24 E-value=51 Score=39.18 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=63.7
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc----cceEeeccc---C---chH-------------------HH
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE----NFVSWGGSI---R---ASE-------------------GF 235 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~----~fv~w~~~v---~---~~E-------------------g~ 235 (465)
.+|++||++....+..|.... |.+.++-++ +|.++++.. + +.+ ..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~------P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVL------PDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHh------HHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 589999999998887776532 333333321 355555531 1 111 12
Q ss_pred HHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhhcH
Q 012346 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNP 288 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~~ 288 (465)
.+.+.|++..+|..+||++. | .++.++.|....+++...|..++..|..
T Consensus 493 ~~~~~~~V~~iPt~ilid~~-G---~iv~~~~G~~~~~~l~~~l~~~l~~~~~ 541 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPN-G---KLIAQLSGEGHRKDLDDLVEAALQYYGE 541 (1057)
T ss_pred HHHHhcCCCccceEEEECCC-C---eEEEEEecccCHHHHHHHHHHHHHhhcc
Confidence 45677899999999999974 5 3677888988888888888888776643
No 187
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=59.46 E-value=53 Score=26.95 Aligned_cols=18 Identities=11% Similarity=0.408 Sum_probs=11.0
Q ss_pred HHHhCCCCCCCcEEEEec
Q 012346 237 MSNSLKASRYPFCAVVMP 254 (465)
Q Consensus 237 va~~l~~~~~P~i~ii~~ 254 (465)
++..|+++..|..+||++
T Consensus 87 ~~~~~~~~~~P~~~vid~ 104 (114)
T cd02967 87 LGMAYQVSKLPYAVLLDE 104 (114)
T ss_pred HHhhcCCCCcCeEEEECC
Confidence 444566666666666665
No 188
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=59.42 E-value=13 Score=31.84 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=30.9
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhh
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
++.+.--++=||++. +.|+..|+.++|||-.||-..
T Consensus 77 ~edI~lv~~q~gvs~-~~A~~AL~~~~gDl~~AI~~L 112 (115)
T PRK06369 77 EEDIELVAEQTGVSE-EEARKALEEANGDLAEAILKL 112 (115)
T ss_pred HHHHHHHHHHHCcCH-HHHHHHHHHcCCcHHHHHHHH
Confidence 456777888899888 899999999999999998643
No 189
>PTZ00121 MAEBL; Provisional
Probab=58.99 E-value=1.3e+02 Score=36.69 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=6.4
Q ss_pred CCCCcEEEEe
Q 012346 244 SRYPFCAVVM 253 (465)
Q Consensus 244 ~~~P~i~ii~ 253 (465)
..-|.|+|=.
T Consensus 995 ~~KPTCvI~k 1004 (2084)
T PTZ00121 995 LQKPTCVIDK 1004 (2084)
T ss_pred ecCccceecC
Confidence 4567777654
No 190
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=58.51 E-value=14 Score=31.64 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=29.4
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhh
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISS 40 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~ 40 (465)
++.+.--++=||++. +.|+..|+.++||+-.||-.
T Consensus 79 ~eDI~lV~eq~gvs~-e~A~~AL~~~~gDl~~AI~~ 113 (116)
T TIGR00264 79 EDDIELVMKQCNVSK-EEARRALEECGGDLAEAIMK 113 (116)
T ss_pred HHHHHHHHHHhCcCH-HHHHHHHHHcCCCHHHHHHH
Confidence 345666778899888 89999999999999999864
No 191
>PLN03086 PRLI-interacting factor K; Provisional
Probab=57.64 E-value=58 Score=35.71 Aligned_cols=22 Identities=18% Similarity=-0.244 Sum_probs=15.0
Q ss_pred EEEEecCCCcHHHHHHHHHhcC
Q 012346 401 KERRFHSTAVVQLLYDYVDSLG 422 (465)
Q Consensus 401 ~~rrF~~~~tl~~l~~fv~~~~ 422 (465)
-++-|.+..-.--|=.||....
T Consensus 142 GVlEF~A~EG~v~lP~wm~~~L 163 (567)
T PLN03086 142 GVLEFTAEEGSVGLPPHVWSNL 163 (567)
T ss_pred EEEEEEcCCCeEEcCHHHHhhc
Confidence 4677888777666667776554
No 192
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=57.47 E-value=15 Score=36.90 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=35.0
Q ss_pred CCchHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhh
Q 012346 1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (465)
Q Consensus 1 m~~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~ 42 (465)
|+-..+.|.++.+.||..= -.|+..|+.++||++.|+.-.=
T Consensus 1 m~isa~~IK~LRe~Tgagm-~dCKkAL~e~~gDiekAi~~LR 41 (290)
T TIGR00116 1 MAITAQLVKELRERTGAGM-MDCKKALTEANGDFEKAIKNLR 41 (290)
T ss_pred CCCCHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 5545678999999999665 7999999999999999998763
No 193
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.18 E-value=97 Score=31.16 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=60.2
Q ss_pred CcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceee
Q 012346 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (465)
Q Consensus 186 ~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~v 262 (465)
.+++||++-.|.|..|..+.- .+-++..+ .|++-.++++.. -.++..|++.+.|.++++.- |+ -
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p------~Lekla~~~~G~f~LakvN~D~~--p~vAaqfgiqsIPtV~af~d--Gq---p 109 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTP------TLEKLAAEYKGKFKLAKVNCDAE--PMVAAQFGVQSIPTVYAFKD--GQ---P 109 (304)
T ss_pred CCCeEEEecCCCCchHHHHHH------HHHHHHHHhCCceEEEEecCCcc--hhHHHHhCcCcCCeEEEeeC--Cc---C
Confidence 468999999999988877763 33445543 677777776543 35788999999999988874 43 3
Q ss_pred EEeeecCCChHHHHHHHHHHHHh
Q 012346 263 LQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 263 l~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
+.-..|....+.+-..|..++..
T Consensus 110 VdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 110 VDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred ccccCCCCcHHHHHHHHHHhcCh
Confidence 55566766655665556555543
No 194
>PTZ00056 glutathione peroxidase; Provisional
Probab=56.66 E-value=1.4e+02 Score=27.82 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=20.5
Q ss_pred EEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 249 i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.+||+. .| .++.+..|..+++++...|...+.+
T Consensus 148 tflID~-~G---~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 148 KFLVNK-SG---NVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred EEEECC-CC---cEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 455554 24 3556777888888777767655543
No 195
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=56.44 E-value=84 Score=30.49 Aligned_cols=35 Identities=14% Similarity=0.047 Sum_probs=26.0
Q ss_pred CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 245 ~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
..|..+||++. | .++.++.|.++++++...|+..+
T Consensus 200 ~~PttfLIDk~-G---kVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 200 WNFEKFLVDKN-G---KVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred cCceEEEECCC-C---cEEEEECCCCCHHHHHHHHHHHh
Confidence 35778888863 4 46778889999988877777665
No 196
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=55.94 E-value=66 Score=28.02 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHhhcc-ceEeecccCchHHHHHHHhCCCC--CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 213 VLAAFVNEN-FVSWGGSIRASEGFKMSNSLKAS--RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 213 ~v~~~l~~~-fv~w~~~v~~~Eg~~va~~l~~~--~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.|.+-.+.. +.|--.|.+.... +...|+++ .||.++++....+ +..+ ..|..+.+.+.+-+..+++.
T Consensus 48 ~vAk~~kgk~i~Fv~vd~~~~~~--~~~~fgl~~~~~P~v~i~~~~~~-KY~~---~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 48 SVAEKFKKKPWGWLWTEAGAQLD--LEEALNIGGFGYPAMVAINFRKM-KFAT---LKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred HHHHHhcCCcEEEEEEeCcccHH--HHHHcCCCccCCCEEEEEecccC-cccc---ccCccCHHHHHHHHHHHHcC
Confidence 333333445 4444455544444 77788874 5999999998533 4332 55788888887777777654
No 197
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=54.00 E-value=1.2e+02 Score=26.50 Aligned_cols=23 Identities=4% Similarity=0.052 Sum_probs=12.9
Q ss_pred CcEEEEecCCCcceeeEEeeecCCChH
Q 012346 247 PFCAVVMPAANQRIALLQQVEGPKSPE 273 (465)
Q Consensus 247 P~i~ii~~~~~~~~~vl~~i~G~~~~~ 273 (465)
|..+||++. | .|+....|....+
T Consensus 121 ~~~~lid~~-G---~i~~~~~g~~~~~ 143 (154)
T PRK09437 121 RISFLIDAD-G---KIEHVFDKFKTSN 143 (154)
T ss_pred eEEEEECCC-C---EEEEEEcCCCcch
Confidence 566777763 4 3555566654443
No 198
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=53.61 E-value=1.2e+02 Score=28.11 Aligned_cols=47 Identities=11% Similarity=-0.005 Sum_probs=24.8
Q ss_pred cCcEEEEEEeCC-CCCCchHHHhhcCCCHHHHHHhhccceEeecccCchH
Q 012346 185 VFKLLFVYLHSP-DHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE 233 (465)
Q Consensus 185 e~K~LlVyL~~~-~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~E 233 (465)
.+||++|+++.. .+.-|..=... | +....+|=+.++-++++++++.+
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~-l-~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQ-F-SDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHH-H-HHHHHHHHHcCCEEEEEeCCCHH
Confidence 478999998842 23344332211 1 11222333347778887777654
No 199
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=52.68 E-value=1e+02 Score=29.11 Aligned_cols=82 Identities=11% Similarity=0.074 Sum_probs=50.6
Q ss_pred hcCcEEEEE-EeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 184 SVFKLLFVY-LHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 184 ~e~K~LlVy-L~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
...++..|. +..+.+..|.... +.+.++-.. ++.+...|++. .-.++..|++.++|.+.+... |.
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~~~--~~~~~~~~~V~~vPtl~i~~~--~~-- 197 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEANE--NPDLAEKYGVMSVPKIVINKG--VE-- 197 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeCCC--CHHHHHHhCCccCCEEEEecC--CE--
Confidence 344554444 6778887787554 222333322 44455555544 345678899999999998542 31
Q ss_pred eeEEeeecCCChHHHHHHHHH
Q 012346 261 ALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 261 ~vl~~i~G~~~~~~~~~~L~~ 281 (465)
++.|..+.++|.+.|..
T Consensus 198 ----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 ----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred ----EEECCCCHHHHHHHHHh
Confidence 16688888888887654
No 200
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=52.37 E-value=19 Score=31.18 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHH-HHHHhh---ccceEeecccCchHHH-------HHHHhCCC
Q 012346 175 FMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEV-LAAFVN---ENFVSWGGSIRASEGF-------KMSNSLKA 243 (465)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~-v~~~l~---~~fv~w~~~v~~~Eg~-------~va~~l~~ 243 (465)
|.+++.......+.++|++.++.+.+.+.||-+.-..+. |.+.++ .+.++.-+.|.+...| +.-..+++
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l 87 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL 87 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC--
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee
Confidence 344455545677899999998766667777765544433 334444 3667766777766654 33335889
Q ss_pred CCCCcEEEEec
Q 012346 244 SRYPFCAVVMP 254 (465)
Q Consensus 244 ~~~P~i~ii~~ 254 (465)
+..|+++-+..
T Consensus 88 ~~IPTLi~~~~ 98 (119)
T PF06110_consen 88 KGIPTLIRWET 98 (119)
T ss_dssp -SSSEEEECTS
T ss_pred eecceEEEECC
Confidence 99999987764
No 201
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=51.40 E-value=23 Score=33.52 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=34.6
Q ss_pred CCchHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhh
Q 012346 1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (465)
Q Consensus 1 m~~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~ 42 (465)
|+-..+.|.++.+.||..= -.|+..|..++||++.|+.-.=
T Consensus 1 ~~i~a~~ik~LR~~tga~~-~~ck~AL~~~~gd~~~A~~~lr 41 (198)
T PRK12332 1 MAITAKLVKELREKTGAGM-MDCKKALEEANGDMEKAIEWLR 41 (198)
T ss_pred CCCCHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 4445678999999999665 7999999999999999998753
No 202
>PRK09377 tsf elongation factor Ts; Provisional
Probab=50.50 E-value=22 Score=35.67 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=33.9
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~ 43 (465)
-.+.|.++.+.||..= -.|+..|+.++||++.|+.-.=.
T Consensus 5 s~~~IK~LR~~Tgagm-~dCKkAL~e~~gD~ekAi~~Lrk 43 (290)
T PRK09377 5 TAALVKELRERTGAGM-MDCKKALTEADGDIEKAIEWLRK 43 (290)
T ss_pred CHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 5678999999999655 79999999999999999987643
No 203
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=50.16 E-value=3.4e+02 Score=28.83 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=6.7
Q ss_pred cCCCHHHHHHhhcc
Q 012346 208 TLCNEVLAAFVNEN 221 (465)
Q Consensus 208 ~l~~~~v~~~l~~~ 221 (465)
.|+.++|.+|++.+
T Consensus 143 ~l~~~~v~sfl~a~ 156 (429)
T PRK00247 143 FLTSEEVESFLQGR 156 (429)
T ss_pred cCCHHHHHHHHhcc
Confidence 34445555555443
No 204
>CHL00098 tsf elongation factor Ts
Probab=49.19 E-value=24 Score=33.45 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=31.5
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhh
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
.+.|.++.+.||..= -.|+..|..++||++.|+.-.
T Consensus 2 a~~ik~LR~~Tgag~-~dck~AL~e~~gd~~~A~~~L 37 (200)
T CHL00098 2 AELVKELRDKTGAGM-MDCKKALQEANGDFEKALESL 37 (200)
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 467889999999655 799999999999999999765
No 205
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=49.02 E-value=1.1e+02 Score=28.05 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=44.6
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCC-CCcCeEEEeCCCCccc-CCCCccCcccccCC
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCL-EVQNYSLVSNFPRVVY-STDKFSLSLKEAGL 454 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~-~~~~f~L~t~fPr~~~-~~~~~~~TL~e~gL 454 (465)
...|.|.||||+...-++..++|+++|..-|.....+ ....|.|.-.-+.... ...+...+|.+...
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~ 71 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDV 71 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcC
Confidence 4679999999999999999999999999999765443 2345666543332211 11223556665553
No 206
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=48.97 E-value=57 Score=25.30 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=38.7
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCC
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDK 444 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~ 444 (465)
.+.+-||||++..-.-.+..|++++..-+-....+.+..+.+...-.++.+..+.
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 3678899999999999999999999988877766666666665433555555443
No 207
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=47.72 E-value=69 Score=32.89 Aligned_cols=105 Identities=15% Similarity=0.324 Sum_probs=61.2
Q ss_pred CccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHh----hccceEeecccCchHHHHHHHhCCCC
Q 012346 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV----NENFVSWGGSIRASEGFKMSNSLKAS 244 (465)
Q Consensus 169 ~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l----~~~fv~w~~~v~~~Eg~~va~~l~~~ 244 (465)
..-..+|..|+ +..+.|+||.|.+-. +...--++.-..+.|.++. .+.=|-+|. |++..-..+|+.+++.
T Consensus 38 ~LneKNfk~~l----Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~-VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 38 DLNEKNFKRAL----KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGM-VDSKKDAKLAKKLGVE 111 (383)
T ss_dssp EE-TTTHHHHH----HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEE-EETTTTHHHHHHHT--
T ss_pred EcchhHHHHHH----HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEE-eccHHHHHHHHhcCcc
Confidence 33445566544 568899999998743 4444444443444444433 333333332 3455667899999999
Q ss_pred CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 245 ~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.-+.+.|... |. ++. ..|..+++.|++-|...++.
T Consensus 112 E~~SiyVfkd--~~---~IE-ydG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 112 EEGSIYVFKD--GE---VIE-YDGERSADTLVEFLLDLLED 146 (383)
T ss_dssp STTEEEEEET--TE---EEE-E-S--SHHHHHHHHHHHHSS
T ss_pred ccCcEEEEEC--Cc---EEE-ecCccCHHHHHHHHHHhccc
Confidence 9999999774 43 232 33899999999999988873
No 208
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=47.62 E-value=1.7e+02 Score=28.80 Aligned_cols=92 Identities=15% Similarity=0.042 Sum_probs=47.1
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHH--------------------------HHH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--------------------------FKM 237 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg--------------------------~~v 237 (465)
.+||++++.+ ...+.-|..=+..+ ++...+|-+.++.+++.++++++. ..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 4578888877 34444444322211 122223333466777777766531 234
Q ss_pred HHhCCCC-----CCCcEEEEecCCCcceeeE--EeeecCCChHHHHHHHH
Q 012346 238 SNSLKAS-----RYPFCAVVMPAANQRIALL--QQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 238 a~~l~~~-----~~P~i~ii~~~~~~~~~vl--~~i~G~~~~~~~~~~L~ 280 (465)
++.|++. ..|..+||++. | ++.-. .-+....+.++++..|.
T Consensus 175 akayGv~~~~g~a~R~tFIID~d-G-~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKA-G-VVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCC-C-EEEEEEEeCCCCCCCHHHHHHHHH
Confidence 5556653 46888888863 4 11111 11122236777777665
No 209
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=46.34 E-value=16 Score=36.10 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=33.0
Q ss_pred HHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 7 KLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 7 ~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
.+..|+++|...|...|..+|..++|+++.|+..||..
T Consensus 27 ~ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~s 64 (349)
T KOG2756|consen 27 LLCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEP 64 (349)
T ss_pred HHHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCc
Confidence 45678888887776789999999999999999999984
No 210
>PHA02125 thioredoxin-like protein
Probab=45.76 E-value=56 Score=25.13 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=43.9
Q ss_pred EEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeec
Q 012346 189 LFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEG 268 (465)
Q Consensus 189 LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G 268 (465)
++|+++.+.+..|..+.. +|. . + .+.+. +++..+...++..|++..+|++. . | ..+.++.|
T Consensus 1 ~iv~f~a~wC~~Ck~~~~-~l~--~----~--~~~~~--~vd~~~~~~l~~~~~v~~~PT~~--~---g---~~~~~~~G 61 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKP-MLA--N----V--EYTYV--DVDTDEGVELTAKHHIRSLPTLV--N---T---STLDRFTG 61 (75)
T ss_pred CEEEEECCCCHhHHHHHH-HHH--H----H--hheEE--eeeCCCCHHHHHHcCCceeCeEE--C---C---EEEEEEeC
Confidence 378888888877876653 221 1 1 23444 34444456788999999999986 1 3 23456677
Q ss_pred C-CChHHHHHHH
Q 012346 269 P-KSPEEMLMIL 279 (465)
Q Consensus 269 ~-~~~~~~~~~L 279 (465)
. .+..++.+.|
T Consensus 62 ~~~~~~~l~~~~ 73 (75)
T PHA02125 62 VPRNVAELKEKL 73 (75)
T ss_pred CCCcHHHHHHHh
Confidence 5 2335555544
No 211
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.72 E-value=2.1e+02 Score=27.90 Aligned_cols=11 Identities=0% Similarity=0.172 Sum_probs=4.9
Q ss_pred CcHHHHHHHHH
Q 012346 409 AVVQLLYDYVD 419 (465)
Q Consensus 409 ~tl~~l~~fv~ 419 (465)
+++.-+-+|+.
T Consensus 230 d~inriq~~l~ 240 (299)
T KOG3054|consen 230 DSINRIQELLA 240 (299)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 212
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=45.60 E-value=1e+02 Score=31.82 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=65.0
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeE
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl 263 (465)
...+..+|....+.+..|..+...+. .+...++. ++..+.|+-.+-..+++.|++..||.+.+..+. .. .
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~---~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~----~ 114 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYK---KLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KK----P 114 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHH---HHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-Cc----e
Confidence 34566677777788888888875444 44455555 777788888888999999999999999999873 11 2
Q ss_pred EeeecCCChHHHHHHHHHHHHh
Q 012346 264 QQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 264 ~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
....|..+.+.+.+.+...++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 115 IDYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred eeccCcccHHHHHHHHHHhhcc
Confidence 2334566777777766555543
No 213
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=45.22 E-value=1.7e+02 Score=31.42 Aligned_cols=11 Identities=64% Similarity=0.622 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 012346 343 ERKHKEEVEAR 353 (465)
Q Consensus 343 e~k~~eeee~~ 353 (465)
+|..+|+|.++
T Consensus 432 er~~keee~ar 442 (708)
T KOG3654|consen 432 ERAPKEEEVAR 442 (708)
T ss_pred hhcchhhhhhH
Confidence 44455555443
No 214
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=45.19 E-value=60 Score=23.36 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=32.8
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~ 43 (465)
++.+.|-|.+..+..-+..+.=|++.|-|+-.||...+.
T Consensus 10 edlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T PF11547_consen 10 EDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhc
Confidence 577899999999888789999999999999999988653
No 215
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=44.42 E-value=41 Score=22.90 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=28.0
Q ss_pred HHhhccceEeecccCchHHHHH-HHhCCCCCCCcEEEEec
Q 012346 216 AFVNENFVSWGGSIRASEGFKM-SNSLKASRYPFCAVVMP 254 (465)
Q Consensus 216 ~~l~~~fv~w~~~v~~~Eg~~v-a~~l~~~~~P~i~ii~~ 254 (465)
.+.+.++.+...+++....... ...++...+|.+.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 23 ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGP 62 (69)
T ss_pred HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeC
Confidence 3456678888888776654433 25688899999988875
No 216
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=43.59 E-value=55 Score=27.15 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=23.1
Q ss_pred cCcEEEEEEeCC-CCCCchHHHhhcCCCHHHHHHhh----ccceEeecccCchH
Q 012346 185 VFKLLFVYLHSP-DHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRASE 233 (465)
Q Consensus 185 e~K~LlVyL~~~-~~~~s~~f~r~~l~~~~v~~~l~----~~fv~w~~~v~~~E 233 (465)
.+|+++|++... .+. +|...+ +.+.++.+ .++-+++.+.++.+
T Consensus 24 ~gk~~vl~f~~~~~c~----~c~~~l--~~l~~~~~~~~~~~~~vi~is~d~~~ 71 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCP----FCQAEL--PELNELYKKYKDKGVQVIGISTDDPE 71 (124)
T ss_dssp TTSEEEEEEESTTTSH----HHHHHH--HHHHHHHHHHHTTTEEEEEEESSSHH
T ss_pred CCCcEEEEEeCccCcc----ccccch--hHHHHHhhhhccceEEeeeccccccc
Confidence 558888888765 443 333322 22333332 25666666666655
No 217
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=42.66 E-value=61 Score=34.62 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=53.5
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
..++|.||.|++ +..-.-..+.+|+.+.+-|...-..+.+.-.|+ |=-|++.+ +.||...||..+-++++
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI--faGrILKD---~dTL~~~gI~Dg~TvHL 83 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI--YAGRILKD---DDTLKQYGIQDGHTVHL 83 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeee--ecCccccC---hhhHHHcCCCCCcEEEE
Confidence 358999999999 566667788999999998876644444455544 56788874 56999999999888876
No 218
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=41.67 E-value=66 Score=24.24 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=34.4
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
...|+...+|||...++.....|..+|-|-..|+++.+..
T Consensus 6 rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 6 RKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3568899999999454889999999999999999998763
No 219
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=41.19 E-value=89 Score=24.46 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=36.1
Q ss_pred EEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeC
Q 012346 391 VLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSN 434 (465)
Q Consensus 391 i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~ 434 (465)
+.+-||||.+..-.-.+..|+.++..=+-....+.+..+.+..-
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~ 45 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLL 45 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEe
Confidence 46679999999999999999999999887776666777776544
No 220
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=39.53 E-value=2.3e+02 Score=26.45 Aligned_cols=14 Identities=29% Similarity=0.230 Sum_probs=8.8
Q ss_pred ccceEeecccCchH
Q 012346 220 ENFVSWGGSIRASE 233 (465)
Q Consensus 220 ~~fv~w~~~v~~~E 233 (465)
.++.+++.++++.+
T Consensus 58 ~gv~vigvS~D~~~ 71 (203)
T cd03016 58 RNVKLIGLSVDSVE 71 (203)
T ss_pred cCCEEEEEECCCHH
Confidence 36667777766643
No 221
>PRK13191 putative peroxiredoxin; Provisional
Probab=39.25 E-value=1.6e+02 Score=27.93 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=25.1
Q ss_pred cCcEEEEEEeC-CCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHH
Q 012346 185 VFKLLFVYLHS-PDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG 234 (465)
Q Consensus 185 e~K~LlVyL~~-~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg 234 (465)
.+||++|+.+- +.+.-|..=+..+ ++...+|-+.++.++++++++...
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l--~~~~~ef~~~g~~VigvS~Ds~~~ 80 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSF--AKKYEEFKKLNTELIGLSVDSNIS 80 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHH
Confidence 46788776663 3333333322211 122223334577888888887653
No 222
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.33 E-value=4.6e+02 Score=27.66 Aligned_cols=7 Identities=14% Similarity=0.207 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 012346 213 VLAAFVN 219 (465)
Q Consensus 213 ~v~~~l~ 219 (465)
.|++.|+
T Consensus 284 ~v~~~l~ 290 (440)
T KOG2357|consen 284 KVVSQLN 290 (440)
T ss_pred HHHHHHH
Confidence 4444443
No 223
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=38.28 E-value=70 Score=26.11 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=30.9
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCC
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGC 423 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~ 423 (465)
+.|.|=||||.++.-+-..+++-.+||.-+.....
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~ 36 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAG 36 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhC
Confidence 46889999999999999999999999999876543
No 224
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=38.26 E-value=3.1e+02 Score=24.94 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012346 302 NNMRLREEQDAAYRAALEAD-QARERQRREEQERLEREAAEAERKHKEEVEAREREAREAAEREAALAKMRQEKALSL 378 (465)
Q Consensus 302 ~~r~lreeQd~aY~~SL~~D-~ek~~~r~ee~e~~~~~~~e~e~k~~eeee~~~~~~~e~~~~~~~~~~~r~~~~~~l 378 (465)
..+..+.....+|+.++.+. .+|.++|+++.++..+++.+++.+-..+-+.-.+...+...+...-+.....+...+
T Consensus 47 eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~rere~~q~~~E~E~~~~~~KEe~~~~k~~~l 124 (157)
T PF15236_consen 47 EERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAREREELQRQFEEEQRKQREKEEEQTRKTQEL 124 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 225
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=37.43 E-value=52 Score=24.46 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=22.7
Q ss_pred CCCCCCeEEEEEE-CCCCceEEEEecCCCcH
Q 012346 382 PEKGPNVTQVLVR-FPNGERKERRFHSTAVV 411 (465)
Q Consensus 382 P~~~~~~~~i~iR-lP~G~r~~rrF~~~~tl 411 (465)
|..+...+++.+| +-+|+.+..+|.++|++
T Consensus 28 ~gkg~a~v~~klknl~tG~~~e~tf~s~d~v 58 (58)
T PF08207_consen 28 PGKGGAFVRVKLKNLRTGSKVEKTFRSGDKV 58 (58)
T ss_dssp CTTSSSEEEEEEEETTTTEEEEEEEETT-EE
T ss_pred CCCCCeEEEEEEEECCCCCEEEEEECCCCcC
Confidence 4455567777776 77899999999998864
No 226
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.91 E-value=3.6e+02 Score=25.34 Aligned_cols=11 Identities=18% Similarity=0.126 Sum_probs=6.1
Q ss_pred EEEEEECCCCc
Q 012346 389 TQVLVRFPNGE 399 (465)
Q Consensus 389 ~~i~iRlP~G~ 399 (465)
++=+.|+|+|+
T Consensus 207 vr~~~~~~egT 217 (227)
T KOG4691|consen 207 VRPQRRDSEGT 217 (227)
T ss_pred cCCcccCCCCC
Confidence 44455666664
No 227
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=36.65 E-value=2.2e+02 Score=26.50 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=30.8
Q ss_pred hHHHHHHHhCCCCCCCcE-EEEecCCCcceeeEEeeecCCChHHHHH
Q 012346 232 SEGFKMSNSLKASRYPFC-AVVMPAANQRIALLQQVEGPKSPEEMLM 277 (465)
Q Consensus 232 ~Eg~~va~~l~~~~~P~i-~ii~~~~~~~~~vl~~i~G~~~~~~~~~ 277 (465)
++| .++..|++..+|.- +||+.. | .|+.++.|..+.+++-.
T Consensus 133 ~~g-~v~~~~gv~~~P~T~fVIDk~-G---kVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 133 DKG-AVKNAWQLNSEDSAIIVLDKT-G---KVKFVKEGALSDSDIQT 174 (184)
T ss_pred Ccc-hHHHhcCCCCCCceEEEECCC-C---cEEEEEeCCCCHHHHHH
Confidence 344 35678999999888 788873 5 47788899998887644
No 228
>PRK13599 putative peroxiredoxin; Provisional
Probab=36.55 E-value=3.1e+02 Score=26.01 Aligned_cols=10 Identities=10% Similarity=-0.131 Sum_probs=7.0
Q ss_pred CCCcEEEEec
Q 012346 245 RYPFCAVVMP 254 (465)
Q Consensus 245 ~~P~i~ii~~ 254 (465)
+.|.++||++
T Consensus 118 ~~R~tfIID~ 127 (215)
T PRK13599 118 TVRAVFIVDD 127 (215)
T ss_pred eeeEEEEECC
Confidence 4677777776
No 229
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=36.39 E-value=3.3e+02 Score=24.72 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=37.1
Q ss_pred CCCCCCc----cccCHHHHHHHHHhcCcEEEEEEeCCC-CCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHH
Q 012346 164 GNVKPNF----VSEGFMDALQRSRSVFKLLFVYLHSPD-HPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF 235 (465)
Q Consensus 164 g~~~p~f----~~gs~~eAl~~Ak~e~K~LlVyL~~~~-~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~ 235 (465)
|..-|.| -.|+. +..+.-.+||+++|+.--. ...|..=..+. ++..-+|=+-+.+++|.+.++++..
T Consensus 7 G~~aPdF~Lp~~~g~~---v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~F--rd~~~ef~~~~a~V~GIS~Ds~~~~ 78 (157)
T COG1225 7 GDKAPDFELPDQDGET---VSLSDLRGKPVVLYFYPKDFTPGCTTEACDF--RDLLEEFEKLGAVVLGISPDSPKSH 78 (157)
T ss_pred CCcCCCeEeecCCCCE---EehHHhcCCcEEEEECCCCCCCcchHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHH
Confidence 4455666 33333 5566667889999999422 12221111000 1122233334899999999998764
No 230
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=35.47 E-value=1.6e+02 Score=24.77 Aligned_cols=62 Identities=8% Similarity=-0.069 Sum_probs=37.9
Q ss_pred hhccceEeecccCchHHHHHHHhCCCCC--CCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 218 VNENFVSWGGSIRASEGFKMSNSLKASR--YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 218 l~~~fv~w~~~v~~~Eg~~va~~l~~~~--~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.+..+.|-.+|.+..++ +...++.+. +|.++|+....+.+ ..-..+..+++.+..-+..+++
T Consensus 46 ~kgki~Fv~~d~~~~~~--~~~~fgl~~~~~P~i~i~~~~~~~K---y~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 46 EKGAINFLTADGDKFRH--PLLHLGKTPADLPVIAIDSFRHMYL---FPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred cCceEEEEEEechHhhh--HHHHcCCCHhHCCEEEEEcchhcCc---CCCCccccCHHHHHHHHHHHhc
Confidence 44456666666555444 777888875 99999999732222 2113456677766666655543
No 231
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=33.40 E-value=2e+02 Score=24.15 Aligned_cols=85 Identities=9% Similarity=0.027 Sum_probs=46.3
Q ss_pred CcEEEEEEeCC---CCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCchHHHHHHHhCCCC--C--CCcEEEEecCCC
Q 012346 186 FKLLFVYLHSP---DHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEGFKMSNSLKAS--R--YPFCAVVMPAAN 257 (465)
Q Consensus 186 ~K~LlVyL~~~---~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~Eg~~va~~l~~~--~--~P~i~ii~~~~~ 257 (465)
.+.+++|+.-+ ...+...+...+ ..|.+-.+ ..++|-.+|+.+.++ +...|+++ . +|.++|+... +
T Consensus 15 ~~l~~~~~~~~~~~~~~~~~~~~~~~---~~vAk~fk~gki~Fv~~D~~~~~~--~l~~fgl~~~~~~~P~~~i~~~~-~ 88 (111)
T cd03073 15 KPLVVAYYNVDYSKNPKGTNYWRNRV---LKVAKDFPDRKLNFAVADKEDFSH--ELEEFGLDFSGGEKPVVAIRTAK-G 88 (111)
T ss_pred CCeEEEEEeccccCChhHHHHHHHHH---HHHHHHCcCCeEEEEEEcHHHHHH--HHHHcCCCcccCCCCEEEEEeCC-C
Confidence 34466666432 223344444322 24555555 455555566554433 67788876 4 9999998852 3
Q ss_pred cceeeEEeeecCC-ChHHHHHHHH
Q 012346 258 QRIALLQQVEGPK-SPEEMLMILQ 280 (465)
Q Consensus 258 ~~~~vl~~i~G~~-~~~~~~~~L~ 280 (465)
.+.. +.+.. +++.+..-++
T Consensus 89 ~KY~----~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 89 KKYV----MEEEFSDVDALEEFLE 108 (111)
T ss_pred CccC----CCcccCCHHHHHHHHH
Confidence 3322 34455 6666555444
No 232
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=32.63 E-value=1.1e+02 Score=27.29 Aligned_cols=57 Identities=16% Similarity=0.010 Sum_probs=31.8
Q ss_pred cCcEEEEEEeCC-CCCCchHH-HhhcCCCHHHHHHhhccc-eEeecccCchHHHH-HHHhCCC
Q 012346 185 VFKLLFVYLHSP-DHPDTPAF-CEGTLCNEVLAAFVNENF-VSWGGSIRASEGFK-MSNSLKA 243 (465)
Q Consensus 185 e~K~LlVyL~~~-~~~~s~~f-~r~~l~~~~v~~~l~~~f-v~w~~~v~~~Eg~~-va~~l~~ 243 (465)
.+||+++|.+-. ...-|..= ...+ ++..-+|-+.++ .+++.+.++++..+ .+..++.
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~--~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGY--VENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHH--HHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 457888777732 22333321 2111 122334444577 59999999888765 5666655
No 233
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=32.39 E-value=37 Score=36.72 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=59.9
Q ss_pred CccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCc-hHHHH-----HHHhCC
Q 012346 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-SEGFK-----MSNSLK 242 (465)
Q Consensus 169 ~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~-~Eg~~-----va~~l~ 242 (465)
.||- -=++|.+.|+.+.|++++-+--..+.=|+..-+.-|-|++..+++++|||--.+|-.+ |+--+ |-...+
T Consensus 96 dwyp-wgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg 174 (786)
T KOG2244|consen 96 DWYP-WGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSG 174 (786)
T ss_pred ccCc-chHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccC
Confidence 5554 2378999999999998876654455567777789999999999999999987776432 22211 112345
Q ss_pred CCCCCcEEEEec
Q 012346 243 ASRYPFCAVVMP 254 (465)
Q Consensus 243 ~~~~P~i~ii~~ 254 (465)
-...|.-+.+.|
T Consensus 175 ~GGWPmsV~LTP 186 (786)
T KOG2244|consen 175 GGGWPMSVFLTP 186 (786)
T ss_pred CCCCceeEEeCC
Confidence 556787777765
No 234
>COG3122 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.46 E-value=4.3e+02 Score=24.58 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=18.1
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHH
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLY 415 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~ 415 (465)
.|.+-||+|..+.|-+--..+...|.
T Consensus 128 Di~~nF~d~~kIKrI~V~~l~~~~L~ 153 (215)
T COG3122 128 DIGFNFTDGNKIKRIYVDKLTQAQLI 153 (215)
T ss_pred cceeeccCCCEeEEEEecHHHHHHHh
Confidence 37899999987766666555555543
No 235
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=31.34 E-value=2.1e+02 Score=24.51 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHHHHHhCCCC---------CCCcEEEEecCCCcceeeEEeeecCCC
Q 012346 234 GFKMSNSLKAS---------RYPFCAVVMPAANQRIALLQQVEGPKS 271 (465)
Q Consensus 234 g~~va~~l~~~---------~~P~i~ii~~~~~~~~~vl~~i~G~~~ 271 (465)
...++..|++. .+|..+||+.. | .|+....|..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~-G---~V~~~~~g~~~ 136 (146)
T PF08534_consen 94 DGALAKALGVTIMEDPGNGFGIPTTFLIDKD-G---KVVYRHVGPDP 136 (146)
T ss_dssp TSHHHHHTTCEEECCTTTTSSSSEEEEEETT-S---BEEEEEESSBT
T ss_pred HHHHHHHhCCccccccccCCeecEEEEEECC-C---EEEEEEeCCCC
Confidence 34677788887 99999999974 5 35556666554
No 236
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=31.10 E-value=55 Score=23.64 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=18.7
Q ss_pred ChhHHHHHHhhCCCCHHHHHhhh
Q 012346 19 DPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 19 ~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
++.....+|.+-.||++.|+..+
T Consensus 30 ~d~~llRFLRARkf~v~~A~~mL 52 (55)
T PF03765_consen 30 DDNFLLRFLRARKFDVEKAFKML 52 (55)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHH
T ss_pred CHHHHHHHHHHccCCHHHHHHHH
Confidence 33579999999999999999865
No 237
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=30.53 E-value=1e+02 Score=27.78 Aligned_cols=12 Identities=8% Similarity=-0.058 Sum_probs=6.9
Q ss_pred cCcEEEEEEeCC
Q 012346 185 VFKLLFVYLHSP 196 (465)
Q Consensus 185 e~K~LlVyL~~~ 196 (465)
.+|+.+|++...
T Consensus 43 ~Gk~vvl~f~~s 54 (167)
T PRK00522 43 AGKRKVLNIFPS 54 (167)
T ss_pred CCCEEEEEEEcC
Confidence 356666666643
No 238
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=29.17 E-value=3.1e+02 Score=29.17 Aligned_cols=8 Identities=25% Similarity=0.629 Sum_probs=3.4
Q ss_pred HHHhhHHH
Q 012346 91 IITLPYSV 98 (465)
Q Consensus 91 ~~~~p~~~ 98 (465)
++-+|+.+
T Consensus 110 LIQiPIfi 117 (429)
T PRK00247 110 LIQIPVFL 117 (429)
T ss_pred HHHHHHHH
Confidence 34444433
No 239
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=29.02 E-value=1.2e+02 Score=24.07 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=30.8
Q ss_pred EECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEE
Q 012346 393 VRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSL 431 (465)
Q Consensus 393 iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L 431 (465)
|=||||.+..-.-..+.|+.++..-+-....+++..+-|
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~L 42 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYL 42 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhee
Confidence 568999999999999999999999876655555554433
No 240
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=29.00 E-value=1.2e+02 Score=28.77 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=36.5
Q ss_pred HHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 234 GFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 234 g~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
++++.+.+++..||++++... | +|.++..-.=.-+++.++.+|.+.+
T Consensus 163 ~r~l~~rlg~~GfPTl~le~n--g-~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 163 SRRLMQRLGAAGFPTLALERN--G-TMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHHhccCCCCeeeeeeC--C-ceEeccCCcccCCcHHHHHHHHHHH
Confidence 477889999999999999883 4 6888865221568899999887655
No 241
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=28.98 E-value=85 Score=31.44 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=34.2
Q ss_pred CCc-hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhh
Q 012346 1 MVD-VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 1 m~~-~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
|++ -.+.|..+.+.||.. +-.|+..|..++.|+|.|+.-.
T Consensus 1 m~~ita~~VKeLRe~TgAG-MmdCKkAL~E~~Gd~EkAie~L 41 (296)
T COG0264 1 MAEITAALVKELREKTGAG-MMDCKKALEEANGDIEKAIEWL 41 (296)
T ss_pred CCcccHHHHHHHHHHhCCc-HHHHHHHHHHcCCCHHHHHHHH
Confidence 555 567889999999954 5799999999999999999865
No 242
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=27.44 E-value=2.9e+02 Score=21.78 Aligned_cols=58 Identities=14% Similarity=-0.014 Sum_probs=39.0
Q ss_pred EEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcc
Q 012346 392 LVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSL 449 (465)
Q Consensus 392 ~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL 449 (465)
++-||||++-+-.-.+..||.++..=+-....+....+.+..-=-++.+.-+....+|
T Consensus 3 rV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~qD~~~L 60 (73)
T cd01817 3 RVILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQDSSVL 60 (73)
T ss_pred EEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccCCcccee
Confidence 3559999998899999999999888877666555566665444333444443333344
No 243
>smart00455 RBD Raf-like Ras-binding domain.
Probab=27.31 E-value=2.7e+02 Score=21.46 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=34.5
Q ss_pred EEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEe
Q 012346 391 VLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVS 433 (465)
Q Consensus 391 i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t 433 (465)
+.+=||||++..-.-.+..||.++..=+-....+.+..+.+..
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~ 44 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRL 44 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence 3566999999999999999999998888766655666676654
No 244
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=26.97 E-value=53 Score=28.46 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=27.9
Q ss_pred HHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhh
Q 012346 6 DKLAYFQAITGLEDPDLCTEILQAHDWDLELAISS 40 (465)
Q Consensus 6 ~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~ 40 (465)
+-|.=-++=||.+. +.|+..|+.++.||-.||=+
T Consensus 86 eDIkLV~eQa~Vsr-eeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 86 EDIKLVMEQAGVSR-EEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHcCCcHHHHHHH
Confidence 34555567788887 89999999999999999865
No 245
>PLN03086 PRLI-interacting factor K; Provisional
Probab=26.79 E-value=4.4e+02 Score=29.08 Aligned_cols=6 Identities=33% Similarity=0.850 Sum_probs=2.9
Q ss_pred ECCCCc
Q 012346 394 RFPNGE 399 (465)
Q Consensus 394 RlP~G~ 399 (465)
.||-|+
T Consensus 180 ~Lpkgt 185 (567)
T PLN03086 180 WLPKGT 185 (567)
T ss_pred ecCCCC
Confidence 455554
No 246
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=26.30 E-value=8.3e+02 Score=26.21 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=9.3
Q ss_pred CCChHHHHHHHHHHH
Q 012346 269 PKSPEEMLMILQKVI 283 (465)
Q Consensus 269 ~~~~~~~~~~L~~~~ 283 (465)
..+.+.+++.++..+
T Consensus 498 ~SS~eTll~niq~ll 512 (641)
T KOG3915|consen 498 LSSIETLLTNIQGLL 512 (641)
T ss_pred chhHHHHHHHHHHHH
Confidence 345677777766554
No 247
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=26.28 E-value=1.8e+02 Score=29.63 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=51.2
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCC--CCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGC--LEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~--~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
.|-||.-.|.++.-++..++||.+|..-|++... ++...-.|+- -.|++.+ ++|+.+.++.-+..+.|
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy--~GkiL~D---~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIY--SGKILKD---ETTVGEYKVKEKKFIVV 71 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeee--cceeccC---CcchhhhccccCceEEE
Confidence 5789999999999999999999999999998764 2222333443 3666653 67999999886665554
No 248
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=26.10 E-value=5e+02 Score=23.55 Aligned_cols=20 Identities=5% Similarity=0.175 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012346 309 EQDAAYRAALEADQARERQR 328 (465)
Q Consensus 309 eQd~aY~~SL~~D~ek~~~r 328 (465)
+...+|++-|+..+.+.++-
T Consensus 62 ~l~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 62 KLNKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556777776665554443
No 249
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=25.26 E-value=71 Score=32.07 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=30.2
Q ss_pred HhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 10 YFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 10 qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
=.+++||++. +.|..+|++++|++-.||-....+
T Consensus 241 i~~~~~~~~~-~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 241 IVMEATGVSR-EEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHCcCH-HHHHHHHHHhCCCcHHHHHHHHhC
Confidence 3889999888 899999999999999999987654
No 250
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=25.21 E-value=1e+02 Score=31.20 Aligned_cols=91 Identities=20% Similarity=0.295 Sum_probs=54.1
Q ss_pred CcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh---ccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceee
Q 012346 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (465)
Q Consensus 186 ~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~---~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~v 262 (465)
.-..+|++..+.+.-|+.+. -++ .+.-..+.. ++=++||-.-.+.|.+ +++.|.+++||.+=|+-. |.-|+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~-piF-~EAa~~~~~e~P~~kvvwg~VDcd~e~~-ia~ky~I~KyPTlKvfrn--G~~~~- 86 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLK-PIF-EEAAAKFKQEFPEGKVVWGKVDCDKEDD-IADKYHINKYPTLKVFRN--GEMMK- 86 (375)
T ss_pred ceEEeeeeehhhchHHHHHh-HHH-HHHHHHHHHhCCCcceEEEEcccchhhH-HhhhhccccCceeeeeec--cchhh-
Confidence 45667777776654444332 111 111112222 3668999665566655 678999999999998875 53222
Q ss_pred EEeeecCCChHHHHHHHHHHH
Q 012346 263 LQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 263 l~~i~G~~~~~~~~~~L~~~~ 283 (465)
.--.|.-+++.|++.+..-+
T Consensus 87 -rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 87 -REYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred -hhhccchhHHHHHHHHHHHh
Confidence 23446677777777665443
No 251
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=25.05 E-value=64 Score=33.81 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=34.6
Q ss_pred HHhhCCCCCCccccCHHHHHHHHHhcCcEEEEEEeCCC
Q 012346 160 ERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPD 197 (465)
Q Consensus 160 ~~~yg~~~p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~ 197 (465)
+|-||+..|.+---++.||++.-.++.|+|..|+-+.+
T Consensus 334 eEIFGPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~n 371 (477)
T KOG2456|consen 334 EEIFGPILPIITVQSLDEAINFINEREKPLALYIFSNN 371 (477)
T ss_pred hhhccCccceeEhhhHHHHHHHHhcCCCceEEEEecCC
Confidence 67889999999888999999999999999999999864
No 252
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=24.52 E-value=3.8e+02 Score=27.14 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=5.3
Q ss_pred hhhHHHHHHHHH
Q 012346 304 MRLREEQDAAYR 315 (465)
Q Consensus 304 r~lreeQd~aY~ 315 (465)
...|++..+++.
T Consensus 261 ~k~R~~~~~~~~ 272 (321)
T PF07946_consen 261 KKNREEEEEKIL 272 (321)
T ss_pred HHHHHHHHHHHH
Confidence 344544444433
No 253
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=24.25 E-value=5e+02 Score=28.11 Aligned_cols=13 Identities=8% Similarity=-0.051 Sum_probs=6.1
Q ss_pred CCcHHHHHHHHHh
Q 012346 408 TAVVQLLYDYVDS 420 (465)
Q Consensus 408 ~~tl~~l~~fv~~ 420 (465)
+.++..+..=..|
T Consensus 507 t~tl~sv~~~~lc 519 (708)
T KOG3654|consen 507 TETLESVHSGLLC 519 (708)
T ss_pred cCChHhhhhhhhc
Confidence 4455555444433
No 254
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=23.84 E-value=2.9e+02 Score=20.12 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=31.5
Q ss_pred EEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 190 lVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
+++++.+.+..|..... .| +.+.+ ...++-+...|+++.. .++..|++.+.|.+.+
T Consensus 3 v~~f~~~~C~~C~~~~~-~l--~~l~~-~~~~i~~~~id~~~~~--~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQ-AA--NRIAA-LNPNISAEMIDAAEFP--DLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHH-HH--HHHHH-hCCceEEEEEEcccCH--hHHHHcCCcccCEEEE
Confidence 34556667766755532 21 11111 1124556666766543 3677899999999865
No 255
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=22.45 E-value=2.9e+02 Score=25.28 Aligned_cols=45 Identities=24% Similarity=0.163 Sum_probs=33.8
Q ss_pred EEEEECCCC----ceEEEEecCCCcHHHHHHHHHhcCCCCCcC-eEEEeC
Q 012346 390 QVLVRFPNG----ERKERRFHSTAVVQLLYDYVDSLGCLEVQN-YSLVSN 434 (465)
Q Consensus 390 ~i~iRlP~G----~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~-f~L~t~ 434 (465)
.|-|+.++| ..+.-....+.|+.+|++-+.......... +.|.+.
T Consensus 2 ~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~ 51 (162)
T PF13019_consen 2 NVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTN 51 (162)
T ss_pred eEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEe
Confidence 577888999 578888889999999999999876543222 455554
No 256
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=22.32 E-value=6.6e+02 Score=27.21 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012346 295 LDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKHKEEVEAREREAREAAEREAALAKMRQE 373 (465)
Q Consensus 295 ~e~~er~~~r~lreeQd~aY~~SL~~D~ek~~~r~ee~e~~~~~~~e~e~k~~eeee~~~~~~~e~~~~~~~~~~~r~~ 373 (465)
.|++..+......++++++.+.--.+++++.+. ..++....++..+.+++.++.+...+.+........+..+...+.
T Consensus 204 KEreaeea~k~aq~~K~ea~qkq~~~~k~kkka-e~~q~e~dkqr~~ae~kqqeak~~pe~ae~~~~~edek~aE~~kk 281 (489)
T PF05262_consen 204 KEREAEEAAKRAQEAKKEAQQKQKEADKEKKKA-EKKQQELDKQRDEAEQKQQEAKKLPEPAEAQQKKEDEKLAEEEKK 281 (489)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHhCcchhhhhhhhHHHHHHHHHHH
No 257
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=22.26 E-value=5.2e+02 Score=22.50 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=16.5
Q ss_pred cEEEEecCCCcceeeEEeeecCCChHHHHH
Q 012346 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLM 277 (465)
Q Consensus 248 ~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~ 277 (465)
..+||++. | +++.+..|.++.+++..
T Consensus 125 ttflId~~-G---~i~~~~~G~~~~~~l~~ 150 (152)
T cd00340 125 TKFLVDRD-G---EVVKRFAPTTDPEELEK 150 (152)
T ss_pred EEEEECCC-C---cEEEEECCCCCHHHHHh
Confidence 56666652 4 35677778887776543
No 258
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=21.78 E-value=2.1e+02 Score=24.49 Aligned_cols=31 Identities=3% Similarity=-0.151 Sum_probs=15.8
Q ss_pred HHHHHhCCCCC----C--CcEEEEecCCCcceeeEEeeecC
Q 012346 235 FKMSNSLKASR----Y--PFCAVVMPAANQRIALLQQVEGP 269 (465)
Q Consensus 235 ~~va~~l~~~~----~--P~i~ii~~~~~~~~~vl~~i~G~ 269 (465)
..+++.|++.. . |..+||++. | .++.+..|.
T Consensus 97 ~~~~~~~g~~~~~~~~~~~~~~lid~~-G---~v~~~~~~~ 133 (149)
T cd03018 97 GEVAKAYGVFDEDLGVAERAVFVIDRD-G---IIRYAWVSD 133 (149)
T ss_pred hHHHHHhCCccccCCCccceEEEECCC-C---EEEEEEecC
Confidence 34556666552 2 266777752 3 344444443
No 259
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.07 E-value=8.8e+02 Score=24.60 Aligned_cols=9 Identities=11% Similarity=0.556 Sum_probs=3.6
Q ss_pred CCHHHHHHh
Q 012346 210 CNEVLAAFV 218 (465)
Q Consensus 210 ~~~~v~~~l 218 (465)
|...|..++
T Consensus 31 C~sCv~~l~ 39 (309)
T TIGR00570 31 CESCVDLLF 39 (309)
T ss_pred cHHHHHHHh
Confidence 334444433
No 260
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=21.00 E-value=1.1e+02 Score=30.99 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=30.2
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHh
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAIS 39 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~ 39 (465)
.-+.|.++.+=||..= ..|+.-|+.|||||..|..
T Consensus 46 ~~allk~LR~kTgas~-~ncKkALee~~gDl~~A~~ 80 (340)
T KOG1071|consen 46 SKALLKKLREKTGASM-VNCKKALEECGGDLVLAEE 80 (340)
T ss_pred cHHHHHHHHHHcCCcH-HHHHHHHHHhCCcHHHHHH
Confidence 4578999999999654 8999999999999988754
Done!