Query 012346
Match_columns 465
No_of_seqs 284 out of 1175
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ec4_A FAS-associated factor 1 100.0 7.7E-35 2.6E-39 268.3 15.6 146 144-290 9-174 (178)
2 2cr5_A Reproduction 8; UBX dom 99.8 1.6E-21 5.6E-26 165.1 9.4 89 374-464 8-97 (109)
3 3qx1_A FAS-associated factor 1 99.8 2.5E-20 8.5E-25 150.5 10.9 79 386-465 5-83 (84)
4 2dzk_A UBX domain-containing p 99.8 6.5E-20 2.2E-24 155.1 10.9 80 385-464 10-89 (109)
5 2dlx_A UBX domain-containing p 99.8 2.6E-18 8.8E-23 154.2 14.6 114 170-287 26-139 (153)
6 1wj4_A KIAA0794 protein; UBX d 99.8 6.6E-19 2.3E-23 152.1 10.1 79 385-464 40-118 (124)
7 1s3s_G P47 protein; AAA ATPase 99.6 3.5E-16 1.2E-20 135.7 8.6 73 386-460 50-123 (127)
8 3e21_A HFAF1, FAS-associated f 99.4 2.7E-13 9.3E-18 94.8 5.1 43 1-43 2-44 (45)
9 1v92_A NSFL1 cofactor P47; 3-h 99.2 9.2E-12 3.1E-16 88.4 3.8 44 1-45 2-45 (46)
10 2dam_A ETEA protein; KIAA0887, 99.1 4.2E-11 1.4E-15 91.7 5.0 44 3-46 17-60 (67)
11 2dal_A Protein KIAA0794; FAS a 98.9 2E-09 6.8E-14 81.1 4.9 42 4-46 15-56 (62)
12 2dzl_A Protein FAM100B; UBA-li 98.8 2.1E-09 7.1E-14 81.9 4.8 45 1-46 12-58 (66)
13 2kzr_A Ubiquitin thioesterase 98.7 2.3E-08 7.8E-13 80.4 5.6 75 390-464 2-76 (86)
14 2kuc_A Putative disulphide-iso 98.6 3.8E-07 1.3E-11 77.5 12.3 115 168-286 9-123 (130)
15 2ju5_A Thioredoxin disulfide i 98.5 8.5E-07 2.9E-11 78.4 12.7 113 165-284 28-152 (154)
16 3f9u_A Putative exported cytoc 98.5 4.1E-07 1.4E-11 81.5 10.1 115 168-286 29-168 (172)
17 2lst_A Thioredoxin; structural 97.9 1.6E-08 5.4E-13 86.3 0.0 111 176-287 9-119 (130)
18 3ph9_A Anterior gradient prote 98.3 8.9E-07 3.1E-11 78.7 6.5 111 171-288 29-149 (151)
19 3fk8_A Disulphide isomerase; A 98.1 1.4E-05 4.8E-10 68.1 8.9 103 174-281 17-130 (133)
20 3ira_A Conserved protein; meth 98.0 4.5E-05 1.5E-09 69.2 11.0 85 169-257 23-115 (173)
21 2fwh_A Thiol:disulfide interch 97.9 7.7E-05 2.6E-09 63.8 10.4 104 174-284 21-128 (134)
22 3bq3_A Defective in cullin ned 97.6 4.5E-05 1.5E-09 73.8 4.3 42 3-45 14-55 (270)
23 2pjh_A Protein NPL4, nuclear p 97.4 0.00011 3.8E-09 57.9 4.4 74 389-464 5-79 (80)
24 1ep7_A Thioredoxin CH1, H-type 97.4 0.00083 2.8E-08 54.7 9.9 100 173-283 11-110 (112)
25 1thx_A Thioredoxin, thioredoxi 97.4 0.0016 5.6E-08 52.9 11.3 99 173-284 15-113 (115)
26 3tco_A Thioredoxin (TRXA-1); d 97.3 0.0014 4.7E-08 52.7 9.8 99 171-283 10-108 (109)
27 2vm1_A Thioredoxin, thioredoxi 97.3 0.0014 5E-08 53.6 9.6 100 172-285 14-115 (118)
28 1xfl_A Thioredoxin H1; AT3G510 97.3 0.0018 6.2E-08 54.4 10.4 96 173-282 25-122 (124)
29 2l57_A Uncharacterized protein 97.3 0.0008 2.7E-08 56.3 8.1 97 182-285 22-118 (126)
30 2voc_A Thioredoxin; electron t 97.2 0.0012 4.1E-08 54.1 8.9 99 171-284 7-105 (112)
31 2e0q_A Thioredoxin; electron t 97.2 0.0029 9.9E-08 50.1 10.9 98 172-284 6-103 (104)
32 2yzu_A Thioredoxin; redox prot 97.2 0.0018 6.2E-08 51.9 9.6 98 172-283 8-105 (109)
33 3gnj_A Thioredoxin domain prot 97.2 0.0039 1.3E-07 50.4 11.6 91 184-284 20-110 (111)
34 1w4v_A Thioredoxin, mitochondr 97.2 0.0027 9.4E-08 52.6 10.8 93 181-283 26-118 (119)
35 2i4a_A Thioredoxin; acidophIle 97.2 0.0019 6.7E-08 51.7 9.4 97 172-281 9-105 (107)
36 3die_A Thioredoxin, TRX; elect 97.2 0.0019 6.3E-08 51.8 9.2 96 171-281 9-104 (106)
37 1ti3_A Thioredoxin H, PTTRXH1; 97.1 0.0021 7.2E-08 52.2 9.0 97 173-283 13-111 (113)
38 1wju_A NEDD8 ultimate buster-1 97.1 0.0021 7.3E-08 52.6 8.7 72 386-462 13-88 (100)
39 1nsw_A Thioredoxin, TRX; therm 97.1 0.0012 4.2E-08 52.9 7.3 92 181-282 12-103 (105)
40 2trx_A Thioredoxin; electron t 97.1 0.0031 1.1E-07 50.7 9.8 98 173-283 10-107 (108)
41 2vlu_A Thioredoxin, thioredoxi 97.1 0.0034 1.2E-07 51.9 10.1 98 172-283 20-119 (122)
42 3p2a_A Thioredoxin 2, putative 97.0 0.0041 1.4E-07 53.6 10.6 102 171-286 44-145 (148)
43 3v6c_B Ubiquitin; structural g 97.0 0.0031 1.1E-07 50.4 9.0 75 384-463 13-87 (91)
44 3dml_A Putative uncharacterize 97.0 0.00083 2.9E-08 56.7 5.8 98 185-288 17-114 (116)
45 3d22_A TRXH4, thioredoxin H-ty 97.0 0.0026 9E-08 54.1 9.2 100 172-285 32-133 (139)
46 2dml_A Protein disulfide-isome 97.0 0.0037 1.3E-07 52.3 9.9 102 172-285 24-125 (130)
47 2dzi_A Ubiquitin-like protein 97.0 0.0031 1.1E-07 48.8 8.7 74 385-463 4-77 (81)
48 1dby_A Chloroplast thioredoxin 97.0 0.0037 1.3E-07 50.2 9.4 93 181-283 14-106 (107)
49 3hxs_A Thioredoxin, TRXP; elec 97.0 0.0039 1.3E-07 53.0 9.9 90 185-284 50-139 (141)
50 1z96_A DNA-damage, UBA-domain 97.0 0.00088 3E-08 45.2 4.3 38 3-42 3-40 (40)
51 2ppt_A Thioredoxin-2; thiredox 96.9 0.0074 2.5E-07 52.9 11.6 91 184-284 62-152 (155)
52 3qou_A Protein YBBN; thioredox 96.9 0.016 5.4E-07 55.6 14.7 103 171-285 13-115 (287)
53 2f51_A Thioredoxin; electron t 96.9 0.006 2.1E-07 50.6 10.3 102 171-280 8-109 (118)
54 3m9j_A Thioredoxin; oxidoreduc 96.9 0.0054 1.8E-07 49.0 9.6 95 174-282 10-104 (105)
55 1ndd_A NEDD8, protein (ubiquit 96.9 0.0037 1.3E-07 47.5 8.2 69 390-463 2-70 (76)
56 1fb6_A Thioredoxin M; electron 96.9 0.0053 1.8E-07 48.9 9.4 96 174-282 9-104 (105)
57 1ttn_A DC-UBP, dendritic cell- 96.9 0.003 1E-07 52.2 7.9 79 380-463 14-93 (106)
58 3qfa_C Thioredoxin; protein-pr 96.9 0.0046 1.6E-07 51.1 9.1 95 172-282 19-115 (116)
59 3hz4_A Thioredoxin; NYSGXRC, P 96.9 0.0062 2.1E-07 52.1 10.1 97 179-285 17-113 (140)
60 1t00_A Thioredoxin, TRX; redox 96.8 0.0048 1.7E-07 50.0 8.9 91 183-283 20-110 (112)
61 2o8v_B Thioredoxin 1; disulfid 96.8 0.0031 1E-07 53.4 7.7 100 171-283 28-127 (128)
62 1xwb_A Thioredoxin; dimerizati 96.8 0.0095 3.2E-07 47.5 10.3 95 174-281 10-104 (106)
63 2j23_A Thioredoxin; immune pro 96.8 0.0086 2.9E-07 49.7 10.3 93 180-283 27-120 (121)
64 3ul3_B Thioredoxin, thioredoxi 96.8 0.0044 1.5E-07 52.1 8.4 92 179-280 35-126 (128)
65 3d6i_A Monothiol glutaredoxin- 96.8 0.0098 3.4E-07 48.2 10.3 98 174-283 10-108 (112)
66 3a9j_A Ubiquitin; protein comp 96.8 0.0048 1.6E-07 46.9 7.8 69 390-463 2-70 (76)
67 1wj7_A Hypothetical protein (R 96.8 0.001 3.6E-08 54.4 4.0 41 4-45 39-79 (104)
68 1syr_A Thioredoxin; SGPP, stru 96.8 0.0099 3.4E-07 48.4 10.2 92 173-282 17-110 (112)
69 3mtn_B UBA80, ubcep1, ubiquiti 96.7 0.0056 1.9E-07 47.7 8.2 71 388-463 3-73 (85)
70 3aps_A DNAJ homolog subfamily 96.7 0.012 4.1E-07 48.5 10.7 97 180-286 15-115 (122)
71 1wh3_A 59 kDa 2'-5'-oligoadeny 96.7 0.0081 2.8E-07 47.2 8.9 73 386-463 5-77 (87)
72 1wjn_A Tubulin-folding protein 96.7 0.0099 3.4E-07 48.1 9.6 80 385-464 6-91 (97)
73 1x5d_A Protein disulfide-isome 96.7 0.0079 2.7E-07 50.3 9.4 94 183-286 22-119 (133)
74 2i1u_A Thioredoxin, TRX, MPT46 96.7 0.0029 9.8E-08 52.1 6.4 93 181-283 25-117 (121)
75 2l5l_A Thioredoxin; structural 96.6 0.004 1.4E-07 53.0 7.3 91 185-285 37-127 (136)
76 1sen_A Thioredoxin-like protei 96.6 0.0012 4.2E-08 58.6 3.9 107 173-287 33-151 (164)
77 2bwf_A Ubiquitin-like protein 96.6 0.0074 2.5E-07 46.1 7.9 69 389-463 5-73 (77)
78 4hcn_B Polyubiquitin, ubiquiti 96.6 0.0057 2E-07 49.6 7.5 73 386-463 20-92 (98)
79 1yx5_B Ubiquitin; proteasome, 96.6 0.0084 2.9E-07 48.5 8.5 69 390-463 2-70 (98)
80 2b5x_A YKUV protein, TRXY; thi 96.6 0.0067 2.3E-07 51.3 8.4 98 181-285 24-146 (148)
81 2hj8_A Interferon-induced 17 k 96.6 0.0091 3.1E-07 47.3 8.5 71 388-463 4-74 (88)
82 2wyq_A HHR23A, UV excision rep 96.5 0.013 4.4E-07 45.8 9.0 72 387-463 4-78 (85)
83 1uh6_A Ubiquitin-like 5; beta- 96.5 0.0089 3E-07 48.9 8.2 75 385-464 25-99 (100)
84 2dj1_A Protein disulfide-isome 96.5 0.014 4.6E-07 49.4 9.9 100 171-285 23-125 (140)
85 3phx_B Ubiquitin-like protein 96.5 0.012 4.1E-07 45.3 8.6 71 388-463 4-74 (79)
86 3dbh_I NEDD8; cell cycle, acti 96.5 0.013 4.5E-07 46.0 8.8 73 386-463 10-82 (88)
87 3f3q_A Thioredoxin-1; His TAG, 96.5 0.027 9.2E-07 45.7 11.1 91 177-281 15-107 (109)
88 1zma_A Bacterocin transport ac 96.5 0.016 5.6E-07 47.5 9.7 100 168-279 12-116 (118)
89 1r26_A Thioredoxin; redox-acti 96.4 0.023 7.7E-07 47.7 10.6 93 174-284 29-123 (125)
90 2vim_A Thioredoxin, TRX; thior 96.4 0.028 9.5E-07 44.5 10.6 92 175-282 10-103 (104)
91 2f9s_A Thiol-disulfide oxidore 96.4 0.0099 3.4E-07 50.9 8.4 98 183-287 23-141 (151)
92 2lja_A Putative thiol-disulfid 96.4 0.0035 1.2E-07 53.7 5.4 96 184-286 28-145 (152)
93 2l5o_A Putative thioredoxin; s 96.4 0.0034 1.2E-07 53.9 5.3 98 182-286 24-143 (153)
94 3zzx_A Thioredoxin; oxidoreduc 96.4 0.016 5.6E-07 47.3 9.1 90 174-279 10-101 (105)
95 3apq_A DNAJ homolog subfamily 96.4 0.017 5.9E-07 52.9 10.2 99 173-285 105-203 (210)
96 4euy_A Uncharacterized protein 96.4 0.0063 2.2E-07 49.0 6.4 87 184-283 16-104 (105)
97 1kng_A Thiol:disulfide interch 96.4 0.0038 1.3E-07 53.7 5.3 98 178-285 34-153 (156)
98 2kan_A Uncharacterized protein 96.3 0.019 6.5E-07 46.2 9.1 72 386-463 13-85 (94)
99 3gl3_A Putative thiol:disulfid 96.3 0.0087 3E-07 51.2 7.6 100 179-285 21-143 (152)
100 3uvt_A Thioredoxin domain-cont 96.3 0.043 1.5E-06 43.9 11.3 95 169-281 9-109 (111)
101 1uel_A HHR23B, UV excision rep 96.3 0.018 6.3E-07 46.2 8.9 69 390-463 2-73 (95)
102 1gh2_A Thioredoxin-like protei 96.3 0.04 1.4E-06 44.1 11.0 94 173-282 10-105 (107)
103 1v98_A Thioredoxin; oxidoreduc 96.3 0.02 7E-07 48.6 9.6 99 172-284 40-138 (140)
104 1zzo_A RV1677; thioredoxin fol 96.3 0.011 3.8E-07 49.1 7.7 90 184-284 23-135 (136)
105 4gew_A 5'-tyrosyl-DNA phosphod 96.3 0.0022 7.5E-08 64.6 3.7 40 4-44 45-84 (362)
106 3k9o_B Ubiquitin, UBB+1; E2-25 96.3 0.014 4.9E-07 46.7 7.9 70 389-463 2-71 (96)
107 1wy8_A NP95-like ring finger p 96.3 0.025 8.4E-07 44.6 9.2 74 385-463 4-79 (89)
108 2faz_A Ubiquitin-like containi 96.2 0.015 5.1E-07 44.6 7.7 71 388-463 2-74 (78)
109 1oaz_A Thioredoxin 1; immune s 96.2 0.005 1.7E-07 51.7 5.3 97 172-281 10-120 (123)
110 2oe3_A Thioredoxin-3; electron 96.2 0.032 1.1E-06 45.8 10.1 91 176-280 20-112 (114)
111 4dwf_A HLA-B-associated transc 96.2 0.024 8.4E-07 44.8 8.8 72 386-463 3-74 (90)
112 3hcz_A Possible thiol-disulfid 96.2 0.0042 1.4E-07 52.7 4.5 95 182-283 27-145 (148)
113 3kcm_A Thioredoxin family prot 96.2 0.0062 2.1E-07 52.3 5.6 99 181-286 23-145 (154)
114 2dah_A Ubiquilin-3; UBA domain 96.1 0.0048 1.6E-07 44.6 4.0 42 4-46 9-50 (54)
115 1wx7_A Ubiquilin 3; ubiquitin- 96.1 0.024 8.2E-07 46.6 8.8 72 386-463 15-86 (106)
116 1wmj_A Thioredoxin H-type; str 96.1 0.0022 7.4E-08 53.6 2.4 99 173-285 23-123 (130)
117 2xc2_A Thioredoxinn; oxidoredu 96.1 0.047 1.6E-06 44.6 10.5 93 173-281 22-115 (117)
118 2bwb_A Ubiquitin-like protein 96.1 0.0081 2.8E-07 41.9 4.8 40 4-44 7-46 (46)
119 1wia_A Hypothetical ubiquitin- 96.1 0.024 8.4E-07 45.4 8.5 71 386-463 5-75 (95)
120 1we6_A Splicing factor, putati 96.0 0.028 9.5E-07 46.6 8.8 72 387-463 26-101 (111)
121 1sif_A Ubiquitin; hydrophobic 96.0 0.019 6.6E-07 45.4 7.5 71 388-463 9-79 (88)
122 3raz_A Thioredoxin-related pro 96.0 0.02 6.8E-07 49.1 8.2 92 184-285 22-141 (151)
123 1lu4_A Soluble secreted antige 96.0 0.018 6.1E-07 47.9 7.7 89 184-283 22-135 (136)
124 4eew_A Large proline-rich prot 96.0 0.029 1E-06 44.1 8.5 72 386-463 15-86 (88)
125 3n3k_B Ubiquitin; hydrolase, p 96.0 0.015 5E-07 45.3 6.6 71 388-463 3-73 (85)
126 1vdl_A Ubiquitin carboxyl-term 96.0 0.021 7.1E-07 43.3 6.8 44 5-48 25-68 (80)
127 1yqb_A Ubiquilin 3; structural 96.0 0.026 8.9E-07 46.0 8.1 75 383-463 17-91 (100)
128 2l6c_A Thioredoxin; oxidoreduc 95.9 0.043 1.5E-06 44.5 9.5 89 184-285 17-107 (110)
129 1vej_A Riken cDNA 4931431F19; 95.9 0.014 4.7E-07 45.0 5.9 42 4-46 29-70 (74)
130 1wx8_A Riken cDNA 4931431F19; 95.9 0.023 7.8E-07 45.6 7.6 72 386-463 15-86 (96)
131 3kh7_A Thiol:disulfide interch 95.9 0.0062 2.1E-07 54.3 4.5 113 163-285 32-168 (176)
132 3lor_A Thiol-disulfide isomera 95.9 0.026 8.9E-07 48.6 8.4 100 178-286 22-157 (160)
133 2wz9_A Glutaredoxin-3; protein 95.9 0.053 1.8E-06 46.9 10.4 96 174-285 22-119 (153)
134 3erw_A Sporulation thiol-disul 95.9 0.014 4.9E-07 49.0 6.5 88 185-279 33-144 (145)
135 1oai_A Nuclear RNA export fact 95.9 0.0081 2.8E-07 44.2 4.2 40 3-43 6-45 (59)
136 2klc_A Ubiquilin-1; ubiquitin- 95.8 0.034 1.2E-06 45.3 8.4 72 386-463 23-94 (101)
137 1we7_A SF3A1 protein; structur 95.8 0.029 9.8E-07 46.9 8.1 72 387-463 24-105 (115)
138 2yj7_A LPBCA thioredoxin; oxid 94.8 0.0015 5E-08 52.1 0.0 91 182-282 15-105 (106)
139 2ojr_A Ubiquitin; lanthide-bin 95.8 0.038 1.3E-06 45.7 8.7 72 387-463 34-105 (111)
140 3or5_A Thiol:disulfide interch 95.8 0.018 6.1E-07 49.8 7.0 99 182-287 30-154 (165)
141 1wji_A Tudor domain containing 95.8 0.011 3.9E-07 44.1 4.7 42 4-47 9-50 (63)
142 1vg5_A RSGI RUH-014, rhomboid 95.7 0.0095 3.3E-07 45.8 4.2 42 4-47 29-70 (73)
143 3cxg_A Putative thioredoxin; m 95.7 0.026 8.9E-07 47.8 7.5 99 174-284 30-129 (133)
144 3vdz_A Ubiquitin-40S ribosomal 95.7 0.036 1.2E-06 45.9 8.2 71 388-463 35-105 (111)
145 2kk8_A Uncharacterized protein 95.7 0.029 1E-06 44.1 7.2 71 388-463 10-81 (84)
146 2b1k_A Thiol:disulfide interch 95.7 0.02 6.8E-07 50.0 6.8 91 185-285 50-161 (168)
147 2uyz_B Small ubiquitin-related 95.7 0.031 1.1E-06 42.9 7.2 71 388-463 3-73 (79)
148 4evm_A Thioredoxin family prot 95.7 0.054 1.9E-06 44.5 9.2 42 236-281 95-136 (138)
149 4fbj_B NEDD8; effector-HOST ta 95.7 0.033 1.1E-06 44.1 7.4 69 390-463 2-70 (88)
150 1faa_A Thioredoxin F; electron 95.7 0.067 2.3E-06 44.0 9.8 96 172-282 25-122 (124)
151 3m62_B UV excision repair prot 95.6 0.031 1.1E-06 46.0 7.4 70 389-463 2-71 (106)
152 2jy5_A Ubiquilin-1; UBA, alter 95.6 0.017 5.8E-07 41.4 5.0 40 4-44 12-51 (52)
153 1j8c_A Ubiquitin-like protein 95.6 0.071 2.4E-06 45.2 9.8 71 387-463 31-101 (125)
154 2kjr_A CG11242; UBL, ubiquitin 95.6 0.039 1.4E-06 44.5 7.8 78 386-463 13-93 (95)
155 3plu_A Ubiquitin-like modifier 95.6 0.067 2.3E-06 43.0 9.0 73 385-462 18-90 (93)
156 1mek_A Protein disulfide isome 95.6 0.016 5.4E-07 47.1 5.5 101 171-283 13-116 (120)
157 1v2y_A 3300001G02RIK protein; 95.6 0.031 1.1E-06 46.1 7.1 73 387-463 6-93 (105)
158 2knz_A Ubiquilin-4; cytoplasm, 95.6 0.015 5E-07 41.9 4.5 41 4-45 11-51 (53)
159 1wr1_B Ubiquitin-like protein 95.5 0.015 5E-07 42.7 4.4 40 4-44 17-56 (58)
160 1wyw_B Ubiquitin-like protein 95.5 0.049 1.7E-06 43.9 8.1 73 386-463 19-91 (97)
161 1wxv_A BAG-family molecular ch 95.5 0.08 2.8E-06 42.0 9.3 73 386-463 5-82 (92)
162 1v5o_A 1700011N24RIK protein; 95.5 0.057 1.9E-06 44.0 8.5 74 386-463 5-82 (102)
163 1ify_A HHR23A, UV excision rep 95.5 0.01 3.6E-07 41.9 3.3 39 4-44 8-46 (49)
164 2ggt_A SCO1 protein homolog, m 95.4 0.13 4.4E-06 44.3 11.1 49 234-286 100-163 (164)
165 3fkf_A Thiol-disulfide oxidore 95.4 0.043 1.5E-06 46.2 7.7 90 185-284 32-146 (148)
166 2dj3_A Protein disulfide-isome 95.4 0.018 6.3E-07 48.1 5.3 93 185-285 24-119 (133)
167 2pu9_C TRX-F, thioredoxin F-ty 95.4 0.049 1.7E-06 43.9 7.7 96 172-282 12-109 (111)
168 3b08_A Polyubiquitin-C, ubiqui 95.4 0.054 1.8E-06 46.8 8.4 72 387-463 75-146 (152)
169 3gix_A Thioredoxin-like protei 95.4 0.056 1.9E-06 46.8 8.5 88 184-284 21-121 (149)
170 3dxb_A Thioredoxin N-terminall 95.3 0.045 1.5E-06 50.6 8.2 103 171-286 18-120 (222)
171 2g3q_A Protein YBL047C; endocy 95.3 0.017 5.9E-07 39.5 3.9 39 4-44 4-42 (43)
172 3q6o_A Sulfhydryl oxidase 1; p 95.3 0.068 2.3E-06 50.0 9.4 108 171-287 18-130 (244)
173 2kdi_A Ubiquitin, vacuolar pro 95.2 0.056 1.9E-06 45.1 7.7 72 387-463 8-79 (114)
174 4a20_A Ubiquitin-like protein 95.2 0.09 3.1E-06 42.7 8.7 72 386-462 17-92 (98)
175 3u30_A Ubiquitin, linear DI-ub 95.2 0.056 1.9E-06 48.2 8.2 73 386-463 18-90 (172)
176 3emx_A Thioredoxin; structural 95.2 0.12 4.1E-06 43.6 9.9 88 188-286 33-128 (135)
177 3ia1_A THIO-disulfide isomeras 95.1 0.064 2.2E-06 45.8 8.1 49 233-285 97-145 (154)
178 2djj_A PDI, protein disulfide- 95.1 0.039 1.3E-06 45.2 6.4 89 184-283 23-116 (121)
179 3lwa_A Secreted thiol-disulfid 95.0 0.11 3.9E-06 45.8 9.8 96 182-284 55-181 (183)
180 1jfu_A Thiol:disulfide interch 95.0 0.05 1.7E-06 48.3 7.3 94 185-285 59-181 (186)
181 2lrn_A Thiol:disulfide interch 95.0 0.18 6E-06 43.0 10.6 91 185-285 28-142 (152)
182 2kd0_A LRR repeats and ubiquit 95.0 0.07 2.4E-06 41.9 7.3 67 392-463 15-81 (85)
183 2jp7_A MRNA export factor MEX6 94.9 0.024 8E-07 41.4 3.9 40 4-44 6-45 (57)
184 1v86_A DNA segment, CHR 7, way 94.9 0.077 2.6E-06 42.6 7.5 70 386-462 15-84 (95)
185 2kj6_A Tubulin folding cofacto 94.9 0.12 4.2E-06 41.8 8.7 79 385-463 11-93 (97)
186 3b08_A Polyubiquitin-C, ubiqui 94.9 0.075 2.6E-06 45.9 7.8 69 390-463 2-70 (152)
187 2dj0_A Thioredoxin-related tra 94.8 0.07 2.4E-06 45.0 7.4 94 171-276 13-113 (137)
188 1wgd_A Homocysteine-responsive 94.8 0.12 4.1E-06 41.1 8.3 72 387-463 6-83 (93)
189 3eyt_A Uncharacterized protein 94.7 0.046 1.6E-06 46.9 6.1 47 236-286 108-154 (158)
190 1wgg_A Ubiquitin carboxyl-term 94.7 0.078 2.7E-06 42.7 7.0 71 385-462 4-75 (96)
191 1qgv_A Spliceosomal protein U5 94.6 0.17 5.8E-06 43.3 9.4 93 185-284 22-121 (142)
192 2l2d_A OTU domain-containing p 94.6 0.044 1.5E-06 40.2 4.5 38 3-41 16-53 (73)
193 1nho_A Probable thioredoxin; b 94.6 0.11 3.7E-06 39.3 7.3 80 190-283 5-84 (85)
194 3b1l_X E3 ubiquitin-protein li 93.6 0.0062 2.1E-07 46.5 0.0 69 390-463 2-70 (76)
195 3h79_A Thioredoxin-like protei 94.5 0.13 4.5E-06 42.6 8.3 100 171-281 21-125 (127)
196 1a8l_A Protein disulfide oxido 94.5 0.3 1E-05 44.6 11.5 95 179-283 126-225 (226)
197 3ed3_A Protein disulfide-isome 94.5 0.081 2.8E-06 51.5 8.0 104 174-285 26-143 (298)
198 2rli_A SCO2 protein homolog, m 94.5 0.41 1.4E-05 41.4 11.7 49 235-287 104-167 (171)
199 3rt3_B Ubiquitin-like protein 94.4 0.15 5.1E-06 44.7 8.8 72 387-463 80-151 (159)
200 2l7r_A Ubiquitin-like protein 94.4 0.097 3.3E-06 41.8 6.8 69 388-463 19-87 (93)
201 3rt3_B Ubiquitin-like protein 94.4 0.13 4.3E-06 45.1 8.2 71 389-463 3-74 (159)
202 1wf9_A NPL4 family protein; be 94.3 0.068 2.3E-06 44.0 5.8 76 388-464 7-93 (107)
203 3fw2_A Thiol-disulfide oxidore 94.3 0.26 8.7E-06 41.9 9.9 90 185-284 32-148 (150)
204 2h30_A Thioredoxin, peptide me 94.3 0.04 1.4E-06 47.6 4.7 66 213-284 90-156 (164)
205 3ewl_A Uncharacterized conserv 94.3 0.045 1.5E-06 46.1 4.9 93 182-281 23-138 (142)
206 1v5t_A 8430435I17RIK protein; 94.3 0.12 4E-06 41.0 7.0 73 387-463 6-80 (90)
207 2cwb_A Chimera of immunoglobul 94.3 0.042 1.5E-06 45.4 4.4 42 4-46 66-107 (108)
208 3idv_A Protein disulfide-isome 94.2 0.24 8.1E-06 45.5 10.1 100 171-285 21-123 (241)
209 3hdc_A Thioredoxin family prot 94.1 0.05 1.7E-06 47.0 4.9 92 182-280 37-148 (158)
210 3q3f_A Ribonuclease/ubiquitin 94.1 0.13 4.5E-06 46.9 7.7 70 389-463 106-175 (189)
211 3ha9_A Uncharacterized thiored 94.0 0.36 1.2E-05 41.5 10.4 88 184-283 35-163 (165)
212 2daf_A FLJ35834 protein; hypot 94.0 0.25 8.4E-06 41.4 8.5 72 387-463 14-86 (118)
213 2lxa_A Ubiquitin-like protein 94.0 0.12 4E-06 41.0 6.4 70 389-463 2-75 (87)
214 1x5e_A Thioredoxin domain cont 93.9 0.24 8.2E-06 40.7 8.7 97 171-284 13-110 (126)
215 1x1m_A Ubiquitin-like protein 93.9 0.14 4.8E-06 42.0 7.0 72 387-463 11-97 (107)
216 3t58_A Sulfhydryl oxidase 1; o 93.9 0.25 8.6E-06 52.0 10.6 107 172-287 19-130 (519)
217 1veg_A NEDD8 ultimate buster-1 93.8 0.045 1.5E-06 43.0 3.5 41 4-46 29-69 (83)
218 2kdb_A Homocysteine-responsive 93.8 0.19 6.6E-06 40.7 7.5 72 386-462 21-98 (99)
219 2lrt_A Uncharacterized protein 93.7 0.26 8.9E-06 42.3 8.8 88 185-279 34-143 (152)
220 2cp8_A NEXT to BRCA1 gene 1 pr 93.7 0.079 2.7E-06 38.1 4.2 43 4-47 9-51 (54)
221 1dv0_A DNA repair protein HHR2 93.5 0.052 1.8E-06 37.9 3.1 41 3-45 3-43 (47)
222 2kc2_A Talin-1, F1; FERM, adhe 93.4 0.35 1.2E-05 41.1 8.6 74 390-463 13-120 (128)
223 3m63_B Ubiquitin domain-contai 93.4 0.081 2.8E-06 43.1 4.6 70 388-463 28-97 (101)
224 2dbc_A PDCL2, unnamed protein 93.3 0.13 4.4E-06 43.6 6.0 90 174-280 19-117 (135)
225 1fo5_A Thioredoxin; disulfide 93.3 0.18 6.3E-06 38.0 6.4 82 187-282 3-84 (85)
226 1wiv_A UBP14, ubiquitin-specif 93.1 0.096 3.3E-06 40.2 4.3 41 4-46 29-69 (73)
227 2qsi_A Putative hydrogenase ex 93.1 1.5 5.3E-05 37.6 12.5 108 158-283 10-122 (137)
228 3l0w_B Monoubiquitinated proli 93.1 0.29 9.8E-06 43.7 8.2 69 390-463 2-70 (169)
229 3idv_A Protein disulfide-isome 93.1 1.1 3.7E-05 41.0 12.5 98 171-283 136-236 (241)
230 3u30_A Ubiquitin, linear DI-ub 92.9 0.26 9E-06 43.7 7.6 72 387-463 95-166 (172)
231 2b5e_A Protein disulfide-isome 92.7 0.44 1.5E-05 49.4 10.3 103 170-284 19-122 (504)
232 1v6e_A Cytoskeleton-associated 92.6 0.55 1.9E-05 37.4 8.5 76 388-463 7-85 (95)
233 2hyx_A Protein DIPZ; thioredox 92.5 0.48 1.6E-05 47.3 9.7 95 185-286 81-201 (352)
234 3f8u_A Protein disulfide-isome 92.4 0.25 8.6E-06 50.9 7.8 102 172-284 8-109 (481)
235 2dak_A Ubiquitin carboxyl-term 92.4 0.11 3.9E-06 38.5 3.7 39 4-44 9-47 (63)
236 2qgv_A Hydrogenase-1 operon pr 92.3 0.99 3.4E-05 38.9 10.2 108 156-283 11-124 (140)
237 3ai5_A Yeast enhanced green fl 92.3 0.39 1.3E-05 47.0 8.5 73 386-463 231-303 (307)
238 2lva_A Ubiquitin carboxyl-term 91.5 0.025 8.7E-07 47.2 0.0 42 5-46 19-60 (129)
239 2dkl_A Trinucleotide repeat co 92.1 0.18 6.2E-06 39.8 4.8 39 5-45 22-60 (85)
240 2dzj_A Synaptic glycoprotein S 92.1 0.46 1.6E-05 37.5 7.3 73 388-463 10-86 (88)
241 3eur_A Uncharacterized protein 92.0 0.24 8.3E-06 41.6 5.9 70 186-255 31-123 (142)
242 2ywi_A Hypothetical conserved 91.8 0.11 3.6E-06 46.5 3.6 47 236-286 121-176 (196)
243 3a4r_A Nfatc2-interacting prot 91.8 1 3.5E-05 34.7 8.8 72 386-462 5-77 (79)
244 3u5e_m 60S ribosomal protein L 91.7 0.032 1.1E-06 47.5 0.0 69 390-463 2-70 (128)
245 2gow_A HCG-1 protein, ubiquiti 91.7 1.2 4.1E-05 37.6 9.8 68 386-458 15-90 (125)
246 2r2j_A Thioredoxin domain-cont 91.7 0.73 2.5E-05 46.1 10.1 101 171-285 11-118 (382)
247 1t0y_A Tubulin folding cofacto 91.5 0.84 2.9E-05 38.3 8.7 77 387-463 5-84 (122)
248 1se9_A Ubiquitin family; ubiqu 91.5 1.2 4.1E-05 37.7 9.6 66 387-457 15-88 (126)
249 1oqy_A HHR23A, UV excision rep 91.4 0.35 1.2E-05 48.6 7.3 70 386-460 5-77 (368)
250 2es7_A Q8ZP25_salty, putative 91.4 0.52 1.8E-05 40.5 7.5 98 171-285 23-126 (142)
251 2io0_B Small ubiquitin-related 91.3 1.4 4.9E-05 34.9 9.4 72 387-463 4-75 (91)
252 2io1_B Small ubiquitin-related 91.0 1 3.6E-05 35.9 8.3 73 386-463 5-77 (94)
253 2cpw_A CBL-interacting protein 90.9 0.27 9.2E-06 36.6 4.4 40 5-46 20-60 (64)
254 1wm3_A Ubiquitin-like protein 90.8 1.3 4.4E-05 33.3 8.4 69 389-462 2-70 (72)
255 2al3_A TUG long isoform; TUG U 90.8 0.7 2.4E-05 36.7 6.9 70 389-463 10-79 (90)
256 1o73_A Tryparedoxin; electron 90.7 0.2 6.9E-06 42.0 4.1 75 180-257 22-120 (144)
257 4b6w_A Tubulin-specific chaper 90.5 0.84 2.9E-05 35.8 7.2 73 388-463 2-81 (86)
258 1o8x_A Tryparedoxin, TRYX, TXN 90.1 0.67 2.3E-05 38.9 7.0 73 182-257 24-120 (146)
259 2ywm_A Glutaredoxin-like prote 90.1 2.2 7.6E-05 38.7 11.1 112 153-284 107-220 (229)
260 1i5g_A Tryparedoxin II; electr 90.0 0.76 2.6E-05 38.4 7.2 73 182-257 24-120 (144)
261 2d07_B Ubiquitin-like protein 90.0 1.8 6.1E-05 34.4 8.9 73 386-463 15-87 (93)
262 2dai_A Ubadc1, ubiquitin assoc 90.0 0.24 8.2E-06 38.9 3.6 40 4-45 29-68 (83)
263 2dzm_A FAS-associated factor 1 89.9 1.1 3.6E-05 36.4 7.5 72 387-463 8-79 (100)
264 4f9z_D Endoplasmic reticulum r 89.8 4 0.00014 37.3 12.6 112 167-284 112-225 (227)
265 1wgh_A Ubiquitin-like 3, HCG-1 89.6 2.9 9.9E-05 34.8 10.2 66 387-457 15-88 (116)
266 3drn_A Peroxiredoxin, bacterio 89.6 1.6 5.6E-05 37.4 9.2 44 236-283 97-144 (161)
267 2av4_A Thioredoxin-like protei 89.5 0.88 3E-05 40.2 7.2 98 174-284 31-139 (160)
268 3u5c_f 40S ribosomal protein S 89.5 0.067 2.3E-06 47.1 0.0 69 390-463 2-70 (152)
269 1zof_A Alkyl hydroperoxide-red 89.4 0.97 3.3E-05 40.4 7.8 92 185-282 32-159 (198)
270 3s9f_A Tryparedoxin; thioredox 89.4 0.86 2.9E-05 39.6 7.2 70 185-257 47-140 (165)
271 2bmx_A Alkyl hydroperoxidase C 89.3 1.3 4.5E-05 39.4 8.7 44 236-283 117-169 (195)
272 3f8u_A Protein disulfide-isome 89.3 0.55 1.9E-05 48.3 6.8 100 172-283 359-460 (481)
273 3cmi_A Peroxiredoxin HYR1; thi 89.2 1.2 4E-05 38.7 8.0 41 240-284 122-168 (171)
274 1we0_A Alkyl hydroperoxide red 89.2 2.1 7.2E-05 37.7 9.8 92 185-283 30-156 (187)
275 2k8h_A Small ubiquitin protein 89.2 1.5 5.2E-05 36.2 8.1 73 386-463 24-96 (110)
276 3iv4_A Putative oxidoreductase 89.1 3.2 0.00011 34.3 10.1 90 179-278 17-110 (112)
277 1sji_A Calsequestrin 2, calseq 89.0 1.2 4.2E-05 43.7 8.9 90 184-284 26-122 (350)
278 2eke_C Ubiquitin-like protein 88.9 2.7 9.4E-05 34.3 9.4 72 386-463 29-100 (106)
279 2daj_A KIAA0977 protein, COBL- 88.8 1.7 5.9E-05 33.9 7.5 68 386-455 8-75 (91)
280 2dna_A Unnamed protein product 88.8 0.81 2.8E-05 34.3 5.5 41 5-46 20-60 (67)
281 1wgl_A TOLL-interacting protei 88.8 0.62 2.1E-05 34.1 4.8 44 4-47 9-52 (59)
282 2vup_A Glutathione peroxidase- 88.7 2.8 9.5E-05 37.1 10.3 41 241-285 140-186 (190)
283 2cvb_A Probable thiol-disulfid 88.7 0.54 1.9E-05 41.5 5.5 47 236-286 107-161 (188)
284 1wz0_A Ubiquitin-like protein 88.7 2.2 7.6E-05 34.7 8.7 73 386-463 22-94 (104)
285 1wou_A Thioredoxin -related pr 88.7 0.34 1.2E-05 39.9 3.9 64 185-254 23-101 (123)
286 3us3_A Calsequestrin-1; calciu 88.1 2.5 8.6E-05 41.9 10.6 102 170-284 18-124 (367)
287 1a8l_A Protein disulfide oxido 87.8 2.7 9.3E-05 38.0 9.8 91 185-283 21-112 (226)
288 2ekk_A UBA domain from E3 ubiq 87.6 0.58 2E-05 32.4 3.8 37 4-43 9-45 (47)
289 4fo5_A Thioredoxin-like protei 87.6 0.25 8.5E-06 41.6 2.3 82 185-279 31-140 (143)
290 2p5q_A Glutathione peroxidase 87.5 3.5 0.00012 35.1 10.0 37 244-284 129-168 (170)
291 2h01_A 2-Cys peroxiredoxin; th 87.5 1.9 6.5E-05 38.2 8.4 92 185-282 30-157 (192)
292 3kp8_A Vkorc1/thioredoxin doma 87.3 0.57 1.9E-05 38.0 4.3 86 177-279 3-90 (106)
293 1ilo_A Conserved hypothetical 87.3 2.7 9.4E-05 30.7 8.0 74 189-279 2-76 (77)
294 1whc_A RSGI RUH-027, UBA/UBX 3 87.0 0.39 1.3E-05 35.7 2.9 39 5-45 10-49 (64)
295 3uem_A Protein disulfide-isome 87.0 1.2 4.2E-05 43.7 7.4 96 172-280 256-353 (361)
296 2cp9_A EF-TS, EF-TSMT, elongat 86.8 0.52 1.8E-05 35.0 3.4 36 5-41 10-45 (64)
297 2v1m_A Glutathione peroxidase; 86.4 4.9 0.00017 34.1 10.2 38 243-284 130-167 (169)
298 2dag_A Ubiquitin carboxyl-term 86.3 0.64 2.2E-05 35.6 3.8 40 4-45 9-49 (74)
299 2trc_P Phosducin, MEKA, PP33; 86.0 2 7E-05 39.5 7.9 84 173-271 108-193 (217)
300 3uem_A Protein disulfide-isome 86.0 4.3 0.00015 39.7 10.8 108 170-285 122-231 (361)
301 3apo_A DNAJ homolog subfamily 85.7 2.2 7.7E-05 46.6 9.4 103 174-286 663-769 (780)
302 1xvw_A Hypothetical protein RV 85.6 0.56 1.9E-05 40.1 3.6 34 235-272 105-144 (160)
303 2b7k_A SCO1 protein; metalloch 85.5 5.8 0.0002 35.4 10.6 48 235-286 118-181 (200)
304 1a0r_P Phosducin, MEKA, PP33; 85.2 2 6.7E-05 40.6 7.5 98 174-286 122-224 (245)
305 1uul_A Tryparedoxin peroxidase 85.2 1.8 6E-05 38.9 6.9 93 185-283 35-164 (202)
306 3shq_A UBLCP1; phosphatase, hy 85.2 1.6 5.6E-05 42.9 7.1 72 387-462 4-76 (320)
307 2k6v_A Putative cytochrome C o 85.2 3 0.0001 35.6 8.2 33 244-281 136-170 (172)
308 3evi_A Phosducin-like protein 84.9 1.6 5.3E-05 36.2 5.9 82 172-270 10-93 (118)
309 1zye_A Thioredoxin-dependent p 84.7 3.6 0.00012 37.6 8.9 92 186-283 56-184 (220)
310 2djk_A PDI, protein disulfide- 84.3 5.2 0.00018 33.2 9.1 89 184-285 21-116 (133)
311 2fnj_B Transcription elongatio 84.3 1.6 5.4E-05 36.5 5.6 67 391-462 3-77 (118)
312 2i81_A 2-Cys peroxiredoxin; st 84.0 4.3 0.00015 36.9 9.1 44 236-283 127-179 (213)
313 4a3p_A Ubiquitin carboxyl-term 83.4 1.8 6.1E-05 40.1 6.2 65 400-464 141-207 (217)
314 1vek_A UBP14, ubiquitin-specif 82.4 1.4 4.8E-05 34.5 4.3 40 4-45 29-69 (84)
315 1otr_A Protein CUE2; protein-p 82.1 2 6.9E-05 30.1 4.5 42 3-44 3-44 (49)
316 3kyd_D Small ubiquitin-related 82.0 7 0.00024 32.4 8.6 73 386-463 38-110 (115)
317 3qcp_A QSOX from trypanosoma b 81.9 4.9 0.00017 41.6 9.4 107 173-286 31-154 (470)
318 2c0g_A ERP29 homolog, windbeut 81.8 5.3 0.00018 37.6 8.9 98 171-283 22-131 (248)
319 2qc7_A ERP31, ERP28, endoplasm 81.7 3 0.0001 39.1 7.2 98 171-282 11-117 (240)
320 3apo_A DNAJ homolog subfamily 81.3 1.4 4.9E-05 48.2 5.5 97 174-284 125-221 (780)
321 3jyu_A Ubiquitin carboxyl-term 81.3 4.2 0.00014 37.9 7.9 64 401-464 154-219 (231)
322 3dwv_A Glutathione peroxidase- 81.3 5.8 0.0002 34.9 8.6 39 242-284 142-183 (187)
323 1qmv_A Human thioredoxin perox 80.4 6.6 0.00023 34.7 8.8 91 185-282 33-161 (197)
324 2ls5_A Uncharacterized protein 81.1 0.36 1.2E-05 41.3 0.0 82 182-268 29-133 (159)
325 3gkn_A Bacterioferritin comigr 79.7 4.5 0.00015 34.4 7.1 21 236-257 103-135 (163)
326 4ajy_B Transcription elongatio 79.6 3.4 0.00012 34.4 6.0 66 393-463 5-78 (118)
327 2jxx_A Nfatc2-interacting prot 79.3 14 0.00047 29.6 9.3 74 384-462 21-95 (97)
328 4dbg_A Ranbp-type and C3HC4-ty 79.1 6.2 0.00021 32.1 7.3 71 387-462 21-96 (105)
329 3ga4_A Dolichyl-diphosphooligo 78.6 8.7 0.0003 34.3 8.8 109 169-284 22-153 (178)
330 3kij_A Probable glutathione pe 78.2 14 0.00048 32.0 10.1 36 246-285 132-171 (180)
331 2dhy_A CUE domain-containing p 77.8 2.8 9.5E-05 31.4 4.4 42 3-44 17-58 (67)
332 3u5r_E Uncharacterized protein 77.3 1.1 3.7E-05 41.0 2.5 48 236-285 134-188 (218)
333 2obi_A PHGPX, GPX-4, phospholi 77.1 8 0.00027 33.6 8.2 33 244-280 148-180 (183)
334 2hls_A Protein disulfide oxido 76.8 17 0.00059 33.5 10.8 118 151-286 107-228 (243)
335 2lbc_A Ubiquitin carboxyl-term 76.6 2.4 8.1E-05 35.7 4.2 41 4-46 78-118 (126)
336 2b5e_A Protein disulfide-isome 76.6 3.3 0.00011 42.7 6.2 99 173-284 366-467 (504)
337 3a2v_A Probable peroxiredoxin; 73.8 5.9 0.0002 37.3 6.6 43 236-282 107-160 (249)
338 3ztl_A Thioredoxin peroxidase; 73.6 8.6 0.00029 35.0 7.6 32 236-271 144-181 (222)
339 2ooa_A E3 ubiquitin-protein li 73.4 4.2 0.00014 28.7 4.0 34 5-40 12-45 (52)
340 2ywm_A Glutaredoxin-like prote 73.3 15 0.00051 33.0 9.2 58 219-283 57-114 (229)
341 2p31_A CL683, glutathione pero 72.6 5.8 0.0002 34.6 6.0 31 248-282 149-179 (181)
342 2gs3_A PHGPX, GPX-4, phospholi 70.8 12 0.0004 32.7 7.6 33 245-281 151-183 (185)
343 1xzo_A BSSCO, hypothetical pro 70.7 29 0.001 29.2 10.1 40 241-284 131-172 (174)
344 2crn_A Ubash3A protein; compac 69.8 3.4 0.00012 30.5 3.1 40 5-46 10-50 (64)
345 2jsy_A Probable thiol peroxida 69.7 7 0.00024 33.3 5.8 44 236-283 112-166 (167)
346 2lus_A Thioredoxion; CR-Trp16, 70.5 1.1 3.9E-05 37.0 0.0 19 236-254 99-117 (143)
347 4gqc_A Thiol peroxidase, perox 65.9 18 0.0006 31.1 7.6 94 185-284 32-160 (164)
348 3ixr_A Bacterioferritin comigr 64.8 21 0.00072 31.0 8.0 21 236-257 119-151 (179)
349 2d9s_A CBL E3 ubiquitin protei 64.3 8.6 0.0003 27.2 4.1 35 5-41 10-44 (53)
350 3sbc_A Peroxiredoxin TSA1; alp 64.1 25 0.00086 32.3 8.5 49 185-235 51-100 (216)
351 3bj5_A Protein disulfide-isome 63.6 35 0.0012 28.9 8.9 64 219-285 62-128 (147)
352 2f8a_A Glutathione peroxidase 63.2 45 0.0015 29.8 10.1 36 244-283 171-206 (208)
353 1eej_A Thiol:disulfide interch 62.8 20 0.00067 32.4 7.6 42 233-283 169-210 (216)
354 3tix_A Ubiquitin-like protein 62.8 29 0.00099 31.4 8.3 71 386-462 55-125 (207)
355 3keb_A Probable thiol peroxida 62.1 26 0.0009 32.3 8.3 46 236-283 118-175 (224)
356 1n8j_A AHPC, alkyl hydroperoxi 62.0 41 0.0014 29.2 9.5 42 237-282 103-154 (186)
357 2a4v_A Peroxiredoxin DOT5; yea 61.8 45 0.0015 27.8 9.4 44 236-284 102-154 (159)
358 1aip_C EF-TS, elongation facto 61.0 10 0.00034 34.4 5.0 37 4-41 3-39 (196)
359 3pge_A SUMO-modified prolifera 57.2 43 0.0015 30.4 8.6 72 386-463 27-98 (200)
360 3ivf_A Talin-1; FERM domain, c 56.1 44 0.0015 32.9 9.4 75 387-461 84-163 (371)
361 2c0d_A Thioredoxin peroxidase 55.8 72 0.0025 28.8 10.2 43 236-282 131-182 (221)
362 4eo3_A Bacterioferritin comigr 55.7 43 0.0015 32.4 9.1 48 236-284 88-139 (322)
363 3tue_A Tryparedoxin peroxidase 55.2 55 0.0019 30.0 9.2 49 185-235 55-104 (219)
364 1xb2_B EF-TS, elongation facto 53.4 13 0.00046 35.8 4.8 37 5-42 5-41 (291)
365 2qho_B E3 ubiquitin-protein li 52.2 31 0.0011 23.8 5.1 40 5-44 10-49 (53)
366 4g2e_A Peroxiredoxin; redox pr 51.0 37 0.0012 28.7 6.9 48 185-234 29-77 (157)
367 3me7_A Putative uncharacterize 50.7 67 0.0023 27.3 8.7 67 214-284 81-162 (170)
368 3gyk_A 27KDA outer membrane pr 50.4 88 0.003 26.4 9.5 40 235-284 134-173 (175)
369 2xzm_9 RPS31E; ribosome, trans 49.7 3.5 0.00012 37.4 0.0 56 390-450 2-57 (189)
370 2pn8_A Peroxiredoxin-4; thiore 48.5 75 0.0025 28.3 9.0 43 236-282 123-175 (211)
371 1xvq_A Thiol peroxidase; thior 48.2 75 0.0026 27.0 8.7 20 236-255 110-138 (175)
372 2i3y_A Epididymal secretory gl 46.6 1.4E+02 0.0049 26.7 10.6 35 247-285 178-212 (215)
373 3tjj_A Peroxiredoxin-4; thiore 45.4 79 0.0027 29.3 8.8 19 236-254 166-190 (254)
374 1oqy_A HHR23A, UV excision rep 44.7 18 0.0006 36.1 4.3 39 4-44 168-206 (368)
375 2e7p_A Glutaredoxin; thioredox 43.7 44 0.0015 26.1 5.9 58 187-253 20-80 (116)
376 3qpm_A Peroxiredoxin; oxidored 42.9 1E+02 0.0034 28.2 9.1 42 236-281 152-203 (240)
377 1tr8_A Conserved protein (MTH1 42.1 25 0.00086 28.4 4.0 35 5-40 66-100 (102)
378 2di0_A Activating signal coint 41.7 48 0.0016 24.9 5.2 43 4-46 13-55 (71)
379 3onh_A Ubiquitin-activating en 39.4 42 0.0014 28.2 5.0 54 409-463 20-77 (127)
380 2r37_A Glutathione peroxidase 39.4 2E+02 0.0069 25.4 12.2 36 247-286 160-195 (207)
381 4ae4_A Ubiquitin-associated pr 39.1 28 0.00097 28.8 4.0 37 6-44 78-114 (118)
382 1p3q_Q VPS9P, vacuolar protein 37.9 18 0.00061 25.7 2.2 40 3-42 11-50 (54)
383 3p7x_A Probable thiol peroxida 37.2 1.2E+02 0.0042 25.2 8.2 41 236-280 113-164 (166)
384 1wgn_A UBAP1, ubiquitin associ 34.7 26 0.00089 25.6 2.6 42 4-47 19-60 (63)
385 3ivf_A Talin-1; FERM domain, c 34.2 1.5E+02 0.0051 28.9 9.3 74 388-463 3-82 (371)
386 1h4r_A Merlin; FERM, neurofibr 32.3 1.1E+02 0.0038 29.1 7.7 68 386-455 20-88 (314)
387 1v58_A Thiol:disulfide interch 32.1 66 0.0023 29.4 5.9 46 235-285 189-234 (241)
388 1sji_A Calsequestrin 2, calseq 31.3 2.9E+02 0.01 26.2 10.8 46 239-284 299-346 (350)
389 2v2g_A Peroxiredoxin 6; oxidor 30.4 43 0.0015 30.8 4.2 10 245-254 126-135 (233)
390 1t3b_A Thiol:disulfide interch 29.8 76 0.0026 28.3 5.7 39 233-280 169-207 (211)
391 1wjk_A C330018D20RIK protein; 29.0 59 0.002 25.2 4.3 76 187-282 16-94 (100)
392 1ef1_A Moesin; membrane, FERM 28.8 1.2E+02 0.004 28.5 7.2 66 389-455 2-68 (294)
393 1nm3_A Protein HI0572; hybrid, 28.4 2.1E+02 0.007 25.6 8.6 31 246-281 125-164 (241)
394 2i1j_A Moesin; FERM, coiled-co 28.4 1.3E+02 0.0045 31.6 8.0 69 387-456 3-72 (575)
395 3kts_A Glycerol uptake operon 26.6 75 0.0026 28.5 4.9 102 171-283 39-149 (192)
396 3qij_A Protein 4.1; cytoskelet 26.4 1E+02 0.0036 29.1 6.3 46 387-432 16-62 (296)
397 1z6n_A Hypothetical protein PA 25.3 1E+02 0.0034 26.6 5.5 62 185-254 53-119 (167)
398 2hls_A Protein disulfide oxido 24.8 3.6E+02 0.012 24.2 9.7 52 222-283 65-116 (243)
399 3gv1_A Disulfide interchange p 24.4 1.3E+02 0.0046 25.2 6.0 87 188-285 42-140 (147)
400 2in3_A Hypothetical protein; D 22.7 2.1E+02 0.0072 24.9 7.3 47 235-286 166-212 (216)
401 1aua_A Phosphatidylinositol tr 22.4 79 0.0027 29.7 4.6 39 3-41 29-73 (296)
402 3zrd_A Thiol peroxidase; oxido 22.1 3.8E+02 0.013 23.2 8.9 20 236-255 146-174 (200)
403 3q8g_A CRAL-TRIO domain-contai 21.9 74 0.0025 30.7 4.3 39 3-41 38-82 (320)
404 3kp9_A Vkorc1/thioredoxin doma 21.0 1.4E+02 0.0047 28.5 5.9 89 172-279 185-275 (291)
405 1y8x_B Ubiquitin-activating en 20.8 1.1E+02 0.0036 24.4 4.2 62 401-463 7-82 (98)
No 1
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=7.7e-35 Score=268.31 Aligned_cols=146 Identities=23% Similarity=0.481 Sum_probs=138.1
Q ss_pred ccchhHHHHHHHHHHHHHhhCCCCCCccccCHHHHHHHH----HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh
Q 012346 144 SVSAAALEAMEFVAVFERDYGNVKPNFVSEGFMDALQRS----RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN 219 (465)
Q Consensus 144 ~~~~~~~~~~~f~~~~~~~yg~~~p~f~~gs~~eAl~~A----k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~ 219 (465)
.+.||.+++.+|+++|+++||..||+||+|+|++|++.| +++.|||+||||+++|.+|+.||++||||++|+++|+
T Consensus 9 ~~~dp~~~~~~F~~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~ 88 (178)
T 2ec4_A 9 NAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLS 88 (178)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHH
Confidence 346778899999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccceEeecccCchH-------------HHHHHHh---CCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 220 ENFVSWGGSIRASE-------------GFKMSNS---LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 220 ~~fv~w~~~v~~~E-------------g~~va~~---l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
+|||+|+||++++| |+++++. |++++||+++||+++ +++|+++.+++|.+++++|++.|+.++
T Consensus 89 ~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~-~~~~~vl~~~~G~~~~~~ll~~L~~~~ 167 (178)
T 2ec4_A 89 QNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGK-RSSNEVLNVIQGNTTVDELMMRLMAAM 167 (178)
T ss_dssp HTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCC-SSCCCEEEEECSCCCHHHHHHHHHHHH
T ss_pred cCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcC-CCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999 6788866 899999999999986 668999999999999999999999999
Q ss_pred HhhcHHH
Q 012346 284 EESNPAL 290 (465)
Q Consensus 284 ~~~~~~L 290 (465)
+++.++|
T Consensus 168 e~~~~~l 174 (178)
T 2ec4_A 168 EIFTAQQ 174 (178)
T ss_dssp HHHHHHS
T ss_pred HHhhHhh
Confidence 9998765
No 2
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=99.85 E-value=1.6e-21 Score=165.09 Aligned_cols=89 Identities=30% Similarity=0.442 Sum_probs=80.3
Q ss_pred HHHhcCCCCCCC-CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCccccc
Q 012346 374 KALSLGAEPEKG-PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEA 452 (465)
Q Consensus 374 ~~~~lp~EP~~~-~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~ 452 (465)
++..+|+||+.+ .+.|+|+||||||+|++|||+.++||++||+||++.+. .+..|+|+++||||+|.. +.++||+|+
T Consensus 8 ~~~~lp~EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~~-~~~~f~L~t~fPrk~l~~-d~~~TL~e~ 85 (109)
T 2cr5_A 8 EVPDLPEEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGY-HKSLYRLSTSFPRRALEV-EGGSSLEDI 85 (109)
T ss_dssp CCCCCCCCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTC-CTTTEEEECSSSCCBCCC-CSSCBHHHH
T ss_pred ccccCCCCCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCC-CCCCeEEEeCCCCcCCCC-CCCCCHHHc
Confidence 356789999865 67999999999999999999999999999999999875 468999999999999964 468999999
Q ss_pred CCCCCeeEEEEe
Q 012346 453 GLHPQASLFVEL 464 (465)
Q Consensus 453 gL~p~~~L~ve~ 464 (465)
||+|+++|+|+.
T Consensus 86 gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 86 GITVDTVLNVEE 97 (109)
T ss_dssp TCSSCEEEEEEE
T ss_pred CCCCCeEEEEEe
Confidence 999999999985
No 3
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=99.83 E-value=2.5e-20 Score=150.52 Aligned_cols=79 Identities=37% Similarity=0.571 Sum_probs=73.0
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEeC
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVELN 465 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~~ 465 (465)
.++|+|+||||||+|+++||+.++||++||+||++.+. .+.+|.|+++|||+.|..++.++||+|+||.|+++|+||..
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~~-~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKGF-PWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTTC-CTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcCC-CCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence 46899999999999999999999999999999999765 57899999999999998666799999999999999999963
No 4
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=99.81 E-value=6.5e-20 Score=155.14 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=73.7
Q ss_pred CCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 385 GPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 385 ~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
.++.|+|+||||||+|+++||+.++||++||+||+++.......|.|+++||||+|..++.++||+|+||+|+++|+|+.
T Consensus 10 ~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 10 RSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 46789999999999999999999999999999999985445678999999999999977779999999999999999985
No 5
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.78 E-value=2.6e-18 Score=154.20 Aligned_cols=114 Identities=15% Similarity=0.252 Sum_probs=106.1
Q ss_pred ccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 170 f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
+|.++|++|++.|++++||+||+++.+.+..|+.|+++||+|++|.++|++|||+|.+|++++++..+++.|++..+|++
T Consensus 26 ~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~ 105 (153)
T 2dlx_A 26 MHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYV 105 (153)
T ss_dssp SCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEE
T ss_pred hcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhhc
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~ 287 (465)
++|++.+|..+.. +.| +++++|+..|+.+++.|.
T Consensus 106 ~fld~~~G~~l~~---~~g-~~~~~fl~~L~~~l~~~~ 139 (153)
T 2dlx_A 106 SILDPRTGQKLVE---WHQ-LDVSSFLDQVTGFLGEHG 139 (153)
T ss_dssp EEECTTTCCCCEE---ESS-CCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcEeee---cCC-CCHHHHHHHHHHHHHhcC
Confidence 9999976765554 446 899999999999998875
No 6
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=99.77 E-value=6.6e-19 Score=152.15 Aligned_cols=79 Identities=32% Similarity=0.566 Sum_probs=72.6
Q ss_pred CCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 385 GPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 385 ~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
..+.|+|+||||||+|++|||+.++||++||+||++.+. .+..|.|+++||||+|..++.++||+|+||+|+++|+|+.
T Consensus 40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~~~-~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGY-PNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHC-CTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCC-CCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 357899999999999999999999999999999999843 5689999999999999876779999999999999999985
No 7
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=99.64 E-value=3.5e-16 Score=135.74 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=64.5
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCC-CCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGC-LEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASL 460 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~-~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L 460 (465)
.+.|+|+||||||+|+++||+.++||++||+||+++.. .....|.|+++|||++|.+ .++||+|+||.|+++|
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d--~~~TL~eagL~psavl 123 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELAD--ENQTLKEANLLNAVIV 123 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCS--TTCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCC--CCCcHHHCCCcCceEE
Confidence 46899999999999999999999999999999999743 3457899999999999984 4899999999986554
No 8
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=94.80 Aligned_cols=43 Identities=37% Similarity=0.530 Sum_probs=38.8
Q ss_pred CCchHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhC
Q 012346 1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (465)
Q Consensus 1 m~~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~ 43 (465)
|.+++++|+||++|||+++.+.|+++|++|||||+.||+.||.
T Consensus 2 ~~d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 2 SMDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp -CCHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred cccHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 4589999999999999999899999999999999999999985
No 9
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=99.19 E-value=9.2e-12 Score=88.38 Aligned_cols=44 Identities=34% Similarity=0.554 Sum_probs=40.8
Q ss_pred CCchHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCC
Q 012346 1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (465)
Q Consensus 1 m~~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~ 45 (465)
|++++++|.||++|||++ .+.|+++|++++||||.||..||+++
T Consensus 2 M~~~~~~i~~F~~iTg~~-~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 2 AEERQDALREFVAVTGAE-EDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp TTHHHHHHHHHHHHTCCC-HHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHhCcC-HHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 788999999999999975 48999999999999999999999854
No 10
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=4.2e-11 Score=91.67 Aligned_cols=44 Identities=32% Similarity=0.660 Sum_probs=40.7
Q ss_pred chHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 3 ~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
+++++|.||++|||+.+.+.|+++|+.|+||||.||..||++..
T Consensus 17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~ 60 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQE 60 (67)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 47899999999999878799999999999999999999999765
No 11
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2e-09 Score=81.14 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=38.7
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
++++|.||++|||++. +.|+++|+.++||||.||..||+.+.
T Consensus 15 ~~e~i~qF~~iTg~~~-~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 15 LKGLIQQFTTITGASE-SVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHHHTCCCH-HHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 7789999999999774 89999999999999999999998654
No 12
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=2.1e-09 Score=81.88 Aligned_cols=45 Identities=27% Similarity=0.421 Sum_probs=39.6
Q ss_pred CCc-hH-HHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 1 MVD-VA-DKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 1 m~~-~~-~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
|++ ++ ++|.||++|||.++ +.|+++|+.++||||.||..||+...
T Consensus 12 m~~~~~q~~i~qF~~iTg~~~-~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 12 MDELRHQVMINQFVLAAGCAA-DQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp CHHHHHHHHHHHHHHHHCCCH-HHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred hhcCccHHHHHHHHHHcCCCH-HHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 556 56 89999999999766 89999999999999999999998543
No 13
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.66 E-value=2.3e-08 Score=80.35 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=64.0
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
+|+||+++|+.++..|..++||.+|..+|.......+..+.|+.+||++.+...+.++||+++||.++++|+|..
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 589999999876655999999999999999876656678999999999988633347899999999999999864
No 14
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=3.8e-07 Score=77.48 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=98.9
Q ss_pred CCccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCC
Q 012346 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYP 247 (465)
Q Consensus 168 p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P 247 (465)
..|-..+|.+++..++..+|++||++.++.+..|..+...++.++.+.++++.+++++..+++..+...+++.|++..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~P 88 (130)
T 2kuc_A 9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP 88 (130)
T ss_dssp CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSC
T ss_pred CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCC
Confidence 45677899999999999999999999999999999998888778899999999999999998876777889999999999
Q ss_pred cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 248 ~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.+++++.. | .++.++.|..+.++|...|...+...
T Consensus 89 t~~~~d~~-G---~~~~~~~G~~~~~~l~~~l~~~~~~~ 123 (130)
T 2kuc_A 89 TLLFINSS-G---EVVYRLVGAEDAPELLKKVKLGVESE 123 (130)
T ss_dssp EEEEECTT-S---CEEEEEESCCCHHHHHHHHHHHHSCC
T ss_pred EEEEECCC-C---cEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 99999753 5 24667889999999998888776543
No 15
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=98.53 E-value=8.5e-07 Score=78.43 Aligned_cols=113 Identities=11% Similarity=0.135 Sum_probs=96.2
Q ss_pred CCCCCccccCHHHHHHHHHhcCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCch---------HH
Q 012346 165 NVKPNFVSEGFMDALQRSRSVFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS---------EG 234 (465)
Q Consensus 165 ~~~p~f~~gs~~eAl~~Ak~e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~---------Eg 234 (465)
...+.| .++.+++..++.++|++||++. .+.+..|..+...++.++.+.++.+.++++..+|+++. ..
T Consensus 28 ~~~~~~--~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~ 105 (154)
T 2ju5_A 28 AANLQW--ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKN 105 (154)
T ss_dssp CCCCCE--ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHH
T ss_pred cCCCCC--CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhH
Confidence 345677 7899999999999999999999 89999999999999888999998888999999998763 45
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCC--ChHHHHHHHHHHHH
Q 012346 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPK--SPEEMLMILQKVIE 284 (465)
Q Consensus 235 ~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~--~~~~~~~~L~~~~~ 284 (465)
..+++.|++..+|+++|++.. | .++.++ |.. +.++++..|...+.
T Consensus 106 ~~l~~~~~v~~~Pt~~~~d~~-G---~~~~~~-G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 106 QELKAQYKVTGFPELVFIDAE-G---KQLARM-GFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp HHHHHHTTCCSSSEEEEECTT-C---CEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCEEEEEcCC-C---CEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence 678899999999999999863 5 356677 988 89999998887664
No 16
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=98.51 E-value=4.1e-07 Score=81.54 Aligned_cols=115 Identities=10% Similarity=0.094 Sum_probs=96.5
Q ss_pred CCccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchH--------------
Q 012346 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE-------------- 233 (465)
Q Consensus 168 p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~E-------------- 233 (465)
+.....+|.+++..|+.++|++||++..+.+..|..+...+|.++.+.+.++++|++...++++.+
T Consensus 29 ~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~ 108 (172)
T 3f9u_A 29 VHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTE 108 (172)
T ss_dssp CCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEE
T ss_pred cccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchh
Confidence 334556899999999999999999999999999999999999999999999999999999887543
Q ss_pred ----------HHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCC-hHHHHHHHHHHHHhh
Q 012346 234 ----------GFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKS-PEEMLMILQKVIEES 286 (465)
Q Consensus 234 ----------g~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~-~~~~~~~L~~~~~~~ 286 (465)
+...+..|++..+|++++|++. | .++.++.|..+ +++|...|..+++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~-G---~~~~~~~G~~~~~~~l~~~l~~~l~~~ 168 (172)
T 3f9u_A 109 RTLRTVGDKWSYLQRVKFGANAQPFYVLIDNE-G---NPLNKSYAYDEDISKYINFLQTGLENY 168 (172)
T ss_dssp EEEEEHHHHHHHHHHHHHSCCCSSEEEEECTT-S---CBSSCCBCSCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHcCCCCcceEEEECCC-C---CEEeeccCCCCCHHHHHHHHHHHHHHh
Confidence 1112578999999999999873 5 24566779988 999999999888765
No 17
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=97.88 E-value=1.6e-08 Score=86.33 Aligned_cols=111 Identities=19% Similarity=0.293 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecC
Q 012346 176 MDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPA 255 (465)
Q Consensus 176 ~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~ 255 (465)
.+++..|..+.|++||++.++.+..|..+...++.++.+.+.++.++.++.+++++.+...+++.|++..+|+++++++.
T Consensus 9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~ 88 (130)
T 2lst_A 9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPK 88 (130)
Confidence 88999999999999999999999999999998988899999998899999999987788889999999999999999864
Q ss_pred CCcceeeEEeeecCCChHHHHHHHHHHHHhhc
Q 012346 256 ANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (465)
Q Consensus 256 ~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~ 287 (465)
.|. +..+.++.|..++++|...|...+.+..
T Consensus 89 ~G~-~~~~~~~~G~~~~~~l~~~l~~~~~~~~ 119 (130)
T 2lst_A 89 AGA-WEEVGRLFGSRPRAEFLKELRQVCVKGG 119 (130)
Confidence 342 2116678898899999998888776653
No 18
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=98.29 E-value=8.9e-07 Score=78.67 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=89.2
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
+..+|++|++.|+++.|++||+++.+.+..|..+...++.++.+.++++.+||...+|....+ .+..+++..+|+++
T Consensus 29 W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~---~~~~~~v~~~PT~~ 105 (151)
T 3ph9_A 29 WVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTD---KNLSPDGQYVPRIM 105 (151)
T ss_dssp CCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSC---GGGCTTCCCSSEEE
T ss_pred chhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchh---hHhhcCCCCCCEEE
Confidence 345999999999999999999999999999999999999999999999889998888743222 35678899999999
Q ss_pred EEecCCCcceeeEEeeecC----------CChHHHHHHHHHHHHhhcH
Q 012346 251 VVMPAANQRIALLQQVEGP----------KSPEEMLMILQKVIEESNP 288 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~----------~~~~~~~~~L~~~~~~~~~ 288 (465)
++.+. |. ++.++.|. .+.++++..+..++.+...
T Consensus 106 f~~~~-G~---~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~~ 149 (151)
T 3ph9_A 106 FVDPS-LT---VRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQS 149 (151)
T ss_dssp EECTT-SC---BCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC-
T ss_pred EECCC-CC---EEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHhc
Confidence 99963 53 46677787 3456777777777766543
No 19
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=98.05 E-value=1.4e-05 Score=68.06 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=83.0
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCc-hHHHHHHHhCCC---CCCCcE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-SEGFKMSNSLKA---SRYPFC 249 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~-~Eg~~va~~l~~---~~~P~i 249 (465)
+|++++..|+.++|++||+++.+.+..|..+.. +|.++.+.+.++.++.+..+++++ .+...+++.|++ ..+|++
T Consensus 17 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~ 95 (133)
T 3fk8_A 17 QVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAV 95 (133)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEE
T ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceE
Confidence 578899999999999999999999999999876 688889999888899999998843 344567899999 999999
Q ss_pred EEEecCCCcceeeEEeeec-------CCChHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEG-------PKSPEEMLMILQK 281 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G-------~~~~~~~~~~L~~ 281 (465)
++++.. | .++.+..| ..+.+++.+.|..
T Consensus 96 ~~~d~~-G---~~~~~~~g~~~~~~~~~~~~~l~~~l~~ 130 (133)
T 3fk8_A 96 VVVNSD-G---KVRYTTKGGELANARKMSDQGIYDFFAK 130 (133)
T ss_dssp EEECTT-S---CEEEECCSCTTTTGGGSCHHHHHHHHHH
T ss_pred EEECCC-C---CEEEEecCCcccccccCCHHHHHHHHHH
Confidence 999763 5 25666667 5666666665544
No 20
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=97.96 E-value=4.5e-05 Score=69.16 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=72.1
Q ss_pred CccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhC-------
Q 012346 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSL------- 241 (465)
Q Consensus 169 ~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l------- 241 (465)
.|+. .+.+|++.|+.++|++||++..+.+..|..+-..+|.+++|.++++++||+..+|++... .++..|
T Consensus 23 ~W~~-~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~--~l~~~y~~~~q~~ 99 (173)
T 3ira_A 23 DWYP-WGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERP--DIDNIYMTVCQII 99 (173)
T ss_dssp CCBC-SSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCH--HHHHHHHHHHHHH
T ss_pred CCCC-cCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccC--cHHHHHHHHHHHH
Confidence 5553 569999999999999999999999999999998899999999999999999999987432 233333
Q ss_pred -CCCCCCcEEEEecCCC
Q 012346 242 -KASRYPFCAVVMPAAN 257 (465)
Q Consensus 242 -~~~~~P~i~ii~~~~~ 257 (465)
++..+|+++++.+. |
T Consensus 100 ~gv~g~Pt~v~l~~d-G 115 (173)
T 3ira_A 100 LGRGGWPLNIIMTPG-K 115 (173)
T ss_dssp HSCCCSSEEEEECTT-S
T ss_pred cCCCCCcceeeECCC-C
Confidence 89999999999973 5
No 21
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=97.88 E-value=7.7e-05 Score=63.83 Aligned_cols=104 Identities=14% Similarity=0.077 Sum_probs=81.7
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCc--hHHHHHHHhCCCCCCCcEEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA--SEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~--~Eg~~va~~l~~~~~P~i~i 251 (465)
++..++..++ +|++||++..+.+..|..+...++.++.+.+.++ ++.+...++++ .+...+++.|++..+|.+++
T Consensus 21 ~~~~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~~~ 97 (134)
T 2fwh_A 21 ELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTILF 97 (134)
T ss_dssp HHHHHHHHHT--TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHHhc--CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCEEEE
Confidence 3555555443 7999999999999999999888888889888876 48888888865 56678899999999999999
Q ss_pred EecCCCcceeeE--EeeecCCChHHHHHHHHHHHH
Q 012346 252 VMPAANQRIALL--QQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 252 i~~~~~~~~~vl--~~i~G~~~~~~~~~~L~~~~~ 284 (465)
++.. |. ++ .++.|..+.++|.+.|..+-.
T Consensus 98 ~d~~-G~---~v~~~~~~G~~~~~~l~~~l~~~~~ 128 (134)
T 2fwh_A 98 FDGQ-GQ---EHPQARVTGFMDAETFSAHLRDRQP 128 (134)
T ss_dssp ECTT-SC---BCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred ECCC-CC---EeeeeeeeeccCHHHHHHHHHhcCc
Confidence 9763 52 33 577899999998888765543
No 22
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=97.55 E-value=4.5e-05 Score=73.82 Aligned_cols=42 Identities=14% Similarity=0.438 Sum_probs=38.2
Q ss_pred chHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCC
Q 012346 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (465)
Q Consensus 3 ~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~ 45 (465)
++.+++.||++|||+++ ..|+++|++|+||||.|+..||+.+
T Consensus 14 ~~~~~i~qF~~iTg~~~-~~A~~~L~~~~WdLe~Al~~ff~~~ 55 (270)
T 3bq3_A 14 PEQEAIESFTSLTKCDP-KVSRKYLQRNHWNINYALNDYYDKE 55 (270)
T ss_dssp HHHHHHHHHHHHHCCCH-HHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCH-HHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 37789999999999777 8999999999999999999999754
No 23
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.44 E-value=0.00011 Score=57.91 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=58.2
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCC-cccCCCCccCcccccCCCCCeeEEEEe
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPR-VVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr-~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
..|+||-|+|...+. ...++|+.+|++.|..........+.|...||+ ..+... .+.||+++||.++.+|+|++
T Consensus 5 m~lRvrs~~G~~Ri~-v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~-~~~~l~~lgl~hGd~l~l~~ 79 (80)
T 2pjh_A 5 IIIRVQSPDGVKRIT-ATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITAS-SSKSLHLLKIKHGDLLFLFP 79 (80)
T ss_dssp CCCEEECSSEEEECC-CCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSC-CCCTTTTTCCCTTCCEEC--
T ss_pred EEEEEECCCCCEEEE-cCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCC-CCCCHHHcCCCCCCEEEEec
Confidence 568999999974444 788999999999998765555677888888887 444332 58899999999999999976
No 24
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=97.42 E-value=0.00083 Score=54.65 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=72.9
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii 252 (465)
.+|.+++..++.+.|+.+|+++++.+..|..+...+ ..+.+-...++.+...++++. ..+++.|++..+|++.++
T Consensus 11 ~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~ 85 (112)
T 1ep7_A 11 AAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYAGKVIFLKVDVDAV--AAVAEAAGITAMPTFHVY 85 (112)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTT--HHHHHHHTCCBSSEEEEE
T ss_pred HHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCeEEEEEECCch--HHHHHHcCCCcccEEEEE
Confidence 468888888888899999999999887777766432 234444444788888887643 356788999999997776
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
. .| .++.++.|. +++++.+.|...+
T Consensus 86 ~--~G---~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 86 K--DG---VKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp E--TT---EEEEEEESC-CHHHHHHHHHHHH
T ss_pred E--CC---eEEEEEcCC-CHHHHHHHHHHHh
Confidence 3 35 245677888 8888877776654
No 25
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=97.39 E-value=0.0016 Score=52.95 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=73.9
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii 252 (465)
.+|.+.+ ....|+.+|+++++.+..|..+...+ +.+.+....++.+...+++... .++..|++..+|+++++
T Consensus 15 ~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~~~--~~~~~~~v~~~Pt~~~~ 86 (115)
T 1thx_A 15 AEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYSDRLKVVKLEIDPNP--TTVKKYKVEGVPALRLV 86 (115)
T ss_dssp GGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEESTTCH--HHHHHTTCCSSSEEEEE
T ss_pred cchhhHh---hcCCceEEEEEECCCCHHHHHhHHHH---HHHHHHhCCcEEEEEEEcCCCH--HHHHHcCCCceeEEEEE
Confidence 3444443 35789999999999999998887543 4555555556888888876543 57788999999999998
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
. .| .++.+..|..+.+++...|...+.
T Consensus 87 -~-~G---~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 87 -K-GE---QILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp -E-TT---EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred -c-CC---EEEEEecCCCCHHHHHHHHHHHhc
Confidence 3 35 356678899999998888877654
No 26
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=97.31 E-value=0.0014 Score=52.74 Aligned_cols=99 Identities=12% Similarity=0.097 Sum_probs=71.2
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
-..+|++++. +.|+++|+++++.+..|..+...+ ..+.+-...++.+...+++.. ..++..|++..+|+++
T Consensus 10 ~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~i~~~Pt~~ 80 (109)
T 3tco_A 10 TEENFDEVIR----NNKLVLVDCWAEWCAPCHLYEPIY---KKVAEKYKGKAVFGRLNVDEN--QKIADKYSVLNIPTTL 80 (109)
T ss_dssp CTTTHHHHHH----HSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTC--HHHHHHTTCCSSSEEE
T ss_pred cHHHHHHHHh----cCCeEEEEEECCCCHHHHhhhHHH---HHHHHHhCCCceEEEEccccC--HHHHHhcCcccCCEEE
Confidence 4456776663 489999999999887777776322 233334444677777776543 3568899999999999
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
++ . .| .++.++.|..+.+++...|...+
T Consensus 81 ~~-~-~g---~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 81 IF-V-NG---QLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EE-E-TT---EEEEEEESCCCHHHHHHHHHHHC
T ss_pred EE-c-CC---cEEEeeeccCCHHHHHHHHHHHh
Confidence 98 3 35 35667889999999988887654
No 27
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=97.26 E-value=0.0014 Score=53.62 Aligned_cols=100 Identities=8% Similarity=0.147 Sum_probs=73.2
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..+|++++..|+...|+++|+++++.+..|..+.. .+.++.+. ++.+...+++.. ..++..|++..+|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~ 85 (118)
T 2vm1_A 14 KQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAP------VFAEYAKKFPGAIFLKVDVDEL--KDVAEAYNVEAMPTF 85 (118)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTTS--HHHHHHTTCCSBSEE
T ss_pred HHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHCCCcEEEEEEcccC--HHHHHHcCCCcCcEE
Confidence 35688999999989999999999988877766653 34444443 677877777643 456788999999998
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.++. .|. ++.++.| .+++++...|...+..
T Consensus 86 ~~~~--~g~---~~~~~~g-~~~~~l~~~l~~~~~~ 115 (118)
T 2vm1_A 86 LFIK--DGE---KVDSVVG-GRKDDIHTKIVALMGS 115 (118)
T ss_dssp EEEE--TTE---EEEEEES-CCHHHHHHHHHHHHC-
T ss_pred EEEe--CCe---EEEEecC-CCHHHHHHHHHHHhcc
Confidence 8873 352 4567778 4788888888776643
No 28
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=97.26 E-value=0.0018 Score=54.43 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=70.9
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
.+|.+++..|+...|+++|++.++.+..|..+.. .+.++.++ ++.+..+|++.. ..+++.|++..+|.++
T Consensus 25 ~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~------~l~~l~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~ 96 (124)
T 1xfl_A 25 ETWNEQLQKANESKTLVVVDFTASWCGPCRFIAP------FFADLAKKLPNVLFLKVDTDEL--KSVASDWAIQAMPTFM 96 (124)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHH------HHHHHHHHCSSEEEEEEETTTS--HHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCcEEEEEECccC--HHHHHHcCCCccCEEE
Confidence 4688889999889999999999998877777653 33344433 678888887643 4578899999999988
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
++. .| .++.++.|. +++++.+.|...
T Consensus 97 ~~~--~G---~~~~~~~G~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 97 FLK--EG---KILDKVVGA-KKDELQSTIAKH 122 (124)
T ss_dssp EEE--TT---EEEEEEESC-CHHHHHHHHHHH
T ss_pred EEE--CC---EEEEEEeCC-CHHHHHHHHHHh
Confidence 773 35 356677884 888777766654
No 29
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=97.26 E-value=0.0008 Score=56.32 Aligned_cols=97 Identities=7% Similarity=0.041 Sum_probs=72.2
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCccee
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~ 261 (465)
+....|+++|++.++.+..|..+...+ ..+.+.+..++.+...+++..+...+++.|++..+|.++++.+. | .
T Consensus 22 ~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~-G---~ 94 (126)
T 2l57_A 22 EAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKE-G---N 94 (126)
T ss_dssp TCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTT-C---C
T ss_pred HHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCC-C---C
Confidence 456789999999999887777766433 34444444678888888433455578889999999999999862 4 2
Q ss_pred eEEeeecCCChHHHHHHHHHHHHh
Q 012346 262 LLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 262 vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
++.++.|..+.++|.+.|...+..
T Consensus 95 ~~~~~~G~~~~~~l~~~l~~~~~~ 118 (126)
T 2l57_A 95 KFYVHQGLMRKNNIETILNSLGVK 118 (126)
T ss_dssp EEEEEESCCCHHHHHHHHHHHCCC
T ss_pred EEEEecCCCCHHHHHHHHHHHhcc
Confidence 456788999999988888766543
No 30
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=97.24 E-value=0.0012 Score=54.13 Aligned_cols=99 Identities=10% Similarity=0.097 Sum_probs=74.6
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
-..+|.+++ ..|+.+|++.++.+..|..+...+ +.+.+-+..++.+...|++... .+++.|++..+|.+.
T Consensus 7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~Pt~~ 76 (112)
T 2voc_A 7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMGDKLKIVKIDVDENQ--ETAGKYGVMSIPTLL 76 (112)
T ss_dssp CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHTTTCEEEEEETTTCC--SHHHHTTCCSBSEEE
T ss_pred cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCcEEEEEECCCCH--HHHHHcCCCcccEEE
Confidence 345677777 789999999999988888877543 4555555567888888876533 467889999999999
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
++ . .| .++.+..|..+.+++.+.|...+.
T Consensus 77 ~~-~-~G---~~~~~~~G~~~~~~l~~~l~~~~~ 105 (112)
T 2voc_A 77 VL-K-DG---EVVETSVGFKPKEALQELVNKHLL 105 (112)
T ss_dssp EE-E-TT---EEEEEEESCCCHHHHHHHHHTTSC
T ss_pred EE-e-CC---EEEEEEeCCCCHHHHHHHHHHHHH
Confidence 98 3 35 356788899999988887765543
No 31
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=97.23 E-value=0.0029 Score=50.14 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=69.0
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
..+|++++ ...|+++|+++++.+..|..+...+ ..+.+-+.+ +.+...+++.. ..+++.|++..+|.+.+
T Consensus 6 ~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~-~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~ 75 (104)
T 2e0q_A 6 SKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPII---EELAEDYPQ-VGFGKLNSDEN--PDIAARYGVMSLPTVIF 75 (104)
T ss_dssp TTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHCTT-SEEEEEETTTC--HHHHHHTTCCSSCEEEE
T ss_pred HHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHH---HHHHHHcCC-ceEEEEECCCC--HHHHHhCCccccCEEEE
Confidence 34677776 4678999999999887777775322 223333333 77777776643 35778899999999998
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
+. .| .++.+..|..+.+++...|...+.
T Consensus 76 ~~--~g---~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 76 FK--DG---EPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp EE--TT---EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred EE--CC---eEhhhccCCCCHHHHHHHHHHHhc
Confidence 83 35 245678899998888888876653
No 32
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=97.22 E-value=0.0018 Score=51.95 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=70.9
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
..+|.+++ +..|+++|+++++.+..|..+...+ +.+.+-+..++.+...+++... .+++.|++..+|.+.+
T Consensus 8 ~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~Pt~~~ 78 (109)
T 2yzu_A 8 DQNFDETL----GQHPLVLVDFWAEWCAPCRMIAPIL---EEIAKEYEGKLLVAKLDVDENP--KTAMRYRVMSIPTVIL 78 (109)
T ss_dssp TTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTTCH--HHHHHTTCCSSSEEEE
T ss_pred HhHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHH---HHHHHHhhCceEEEEEECCCCH--hHHHhCCCCcCCEEEE
Confidence 34566544 4678999999999888887776433 3445555557888888876543 5688899999999998
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
+ . .|. ++.+..|..+.+++...|...+
T Consensus 79 ~-~-~g~---~~~~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 79 F-K-DGQ---PVEVLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp E-E-TTE---EEEEEESCCCHHHHHHHHHTTC
T ss_pred E-e-CCc---EeeeEeCCCCHHHHHHHHHHHh
Confidence 8 3 352 4567789989888888776554
No 33
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=97.21 E-value=0.0039 Score=50.37 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=68.8
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeE
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl 263 (465)
...|+.+|+++++.+..|..+...+ +.+.+....++.+...+++... .++..|++..+|.++++. .| ..+
T Consensus 20 ~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~Pt~~~~~--~g---~~~ 89 (111)
T 3gnj_A 20 DEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEEEK--TLFQRFSLKGVPQILYFK--DG---EYK 89 (111)
T ss_dssp TSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCH--HHHHHTTCCSSCEEEEEE--TT---EEE
T ss_pred hcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCcCh--hHHHhcCCCcCCEEEEEE--CC---EEE
Confidence 5679999999999887787776433 3444445556888888877544 568899999999999884 25 246
Q ss_pred EeeecCCChHHHHHHHHHHHH
Q 012346 264 QQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 264 ~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.+..|..+.+++...|...+.
T Consensus 90 ~~~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp EEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHhc
Confidence 678899999999988877664
No 34
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=97.20 E-value=0.0027 Score=52.61 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=67.4
Q ss_pred HHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 181 ~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
...+..|+++|++.++.+..|..+...+ ..+.+-+..++.+...+++... .+++.|++..+|.++++ . .|
T Consensus 26 ~v~~~~k~vlv~f~a~~C~~C~~~~~~l---~~~~~~~~~~v~~~~vd~d~~~--~l~~~~~v~~~Pt~~~~-~-~G--- 95 (119)
T 1w4v_A 26 RVVNSETPVVVDFHAQWCGPCKILGPRL---EKMVAKQHGKVVMAKVDIDDHT--DLAIEYEVSAVPTVLAM-K-NG--- 95 (119)
T ss_dssp HTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEETTTTH--HHHHHTTCCSSSEEEEE-E-TT---
T ss_pred HHHcCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCH--HHHHHcCCCcccEEEEE-e-CC---
Confidence 3445688999999999887777775432 2333344456888888876543 57888999999999988 3 35
Q ss_pred eeEEeeecCCChHHHHHHHHHHH
Q 012346 261 ALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 261 ~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.++.+..|..+.+++...|...+
T Consensus 96 ~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 96 DVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCHHHHHHHHHHHh
Confidence 34667889989988888776654
No 35
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=97.19 E-value=0.0019 Score=51.74 Aligned_cols=97 Identities=8% Similarity=0.058 Sum_probs=70.1
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
..+|.+++ ....|+.+|+++++.+..|..+...+ +.+.+-+..++.+...++++.. .++..|++..+|.+++
T Consensus 9 ~~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~Pt~~~ 80 (107)
T 2i4a_A 9 DSSFDQDV---LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFAGKVTVAKVNIDDNP--ETPNAYQVRSIPTLML 80 (107)
T ss_dssp TTTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTSEEEEEEETTTCC--HHHHHTTCCSSSEEEE
T ss_pred hhhhhHHH---HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhCCcEEEEEEECCCCH--HHHHhcCCCccCEEEE
Confidence 34455444 46789999999999887777776543 4455555557888888876543 4678899999999999
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
+ . .| .++.+..|..+.+++.+.|..
T Consensus 81 ~-~-~G---~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 81 V-R-DG---KVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp E-E-TT---EEEEEEESCCCHHHHHHHHHH
T ss_pred E-e-CC---EEEEEecCCCCHHHHHHHHHh
Confidence 8 3 35 345678899998888777654
No 36
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=97.17 E-value=0.0019 Score=51.77 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=70.9
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
-..+|.+++ ..|+.+|+++++.+..|..+...+ ..+.+-+..++.+...+++.. ..++..|++..+|+++
T Consensus 9 ~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~ 78 (106)
T 3die_A 9 TDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVL---EELAADYEGKADILKLDVDEN--PSTAAKYEVMSIPTLI 78 (106)
T ss_dssp CTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHTTCCSBSEEE
T ss_pred CHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCcC--HHHHHhCCCcccCEEE
Confidence 445677776 789999999999888887776433 445555555677777777644 3567889999999998
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
++. .| .++.+..|..+.+++...|..
T Consensus 79 ~~~--~G---~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 3die_A 79 VFK--DG---QPVDKVVGFQPKENLAEVLDK 104 (106)
T ss_dssp EEE--TT---EEEEEEESCCCHHHHHHHHHT
T ss_pred EEe--CC---eEEEEEeCCCCHHHHHHHHHH
Confidence 885 35 346678899999888877754
No 37
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=97.11 E-value=0.0021 Score=52.18 Aligned_cols=97 Identities=10% Similarity=0.198 Sum_probs=71.0
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
.+|.+++..|+...|+++|+++++.+..|..+.. .+.++.+. ++.+...+++.. ..++..|++..+|++.
T Consensus 13 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~ 84 (113)
T 1ti3_A 13 DTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAP------IFAELAKKFPNVTFLKVDVDEL--KAVAEEWNVEAMPTFI 84 (113)
T ss_dssp HHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHH------HHHHHHHHCSSEEEEEEETTTC--HHHHHHHHCSSTTEEE
T ss_pred HHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHH------HHHHHHHhCCCcEEEEEEcccc--HHHHHhCCCCcccEEE
Confidence 4688888888889999999999988877766653 33344433 677888877643 3467789999999998
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
++. .| .++.++.| .+++++.+.|...+
T Consensus 85 ~~~--~G---~~~~~~~g-~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 85 FLK--DG---KLVDKTVG-ADKDGLPTLVAKHA 111 (113)
T ss_dssp EEE--TT---EEEEEEEC-CCTTHHHHHHHHHH
T ss_pred EEe--CC---EEEEEEec-CCHHHHHHHHHHhh
Confidence 873 35 35667778 57888877776654
No 38
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.10 E-value=0.0021 Score=52.64 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=62.6
Q ss_pred CCeEEEEEECCC----CceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEE
Q 012346 386 PNVTQVLVRFPN----GERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLF 461 (465)
Q Consensus 386 ~~~~~i~iRlP~----G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ 461 (465)
.+.++|.||+|| |+.+.-....++|+.+|-.-|......++....|+ |--|++.+ +.||.+.||.++++|+
T Consensus 13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI--~~GKiL~D---~~TL~~y~I~~gsti~ 87 (100)
T 1wju_A 13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIV--INKKQLQL---GKTLEEQGVAHNVKAM 87 (100)
T ss_dssp CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE--ETTEECCT---TSBHHHHTCCSSEEEE
T ss_pred cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE--eCCeECCC---CCcHHHcCCCCCCEEE
Confidence 578999999999 77899999999999999999998877777888888 45778853 6799999999999887
Q ss_pred E
Q 012346 462 V 462 (465)
Q Consensus 462 v 462 (465)
|
T Consensus 88 v 88 (100)
T 1wju_A 88 V 88 (100)
T ss_dssp E
T ss_pred E
Confidence 6
No 39
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=97.09 E-value=0.0012 Score=52.93 Aligned_cols=92 Identities=10% Similarity=0.009 Sum_probs=66.1
Q ss_pred HHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 181 ~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
.+.+..|+.+|+++++.+..|..+...+ +.+.+-...++.+...++++. ..++..|++..+|.+.++ . .|
T Consensus 12 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~-~-~G--- 81 (105)
T 1nsw_A 12 QAIQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHADKVTVAKLNVDEN--PETTSQFGIMSIPTLILF-K-GG--- 81 (105)
T ss_dssp HHHSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHSTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEE-E-TT---
T ss_pred HHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECcCC--HHHHHHcCCccccEEEEE-e-CC---
Confidence 3445779999999999887777776433 344444445678888887643 357888999999999998 3 35
Q ss_pred eeEEeeecCCChHHHHHHHHHH
Q 012346 261 ALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 261 ~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
.++.++.|..+.+++...|...
T Consensus 82 ~~~~~~~G~~~~~~l~~~l~~~ 103 (105)
T 1nsw_A 82 RPVKQLIGYQPKEQLEAQLADV 103 (105)
T ss_dssp EEEEEEESCCCHHHHHHHTTTT
T ss_pred eEEEEEecCCCHHHHHHHHHHH
Confidence 3466778999988877766543
No 40
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=97.09 E-value=0.0031 Score=50.74 Aligned_cols=98 Identities=8% Similarity=-0.000 Sum_probs=69.7
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii 252 (465)
.+|.+.+ .+..|+++|+++++.+..|..+...+ ..+.+-...++.+...+++... .+++.|++..+|.+.++
T Consensus 10 ~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~Pt~~~~ 81 (108)
T 2trx_A 10 DSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLF 81 (108)
T ss_dssp TTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTCT--THHHHTTCCSSSEEEEE
T ss_pred hhHHHHH---HhcCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhCCCcEEEEEECCCCH--HHHHHcCCcccCEEEEE
Confidence 3455443 46789999999999887777775432 3444444456888888876533 46788999999999988
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
. .|. ++.++.|..+.+++...|...+
T Consensus 82 -~-~G~---~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 82 -K-NGE---VAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp -E-TTE---EEEEEESCCCHHHHHHHHHHHH
T ss_pred -e-CCE---EEEEEecCCCHHHHHHHHHHhh
Confidence 3 352 4567889999988888776654
No 41
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=97.07 E-value=0.0034 Score=51.90 Aligned_cols=98 Identities=12% Similarity=0.117 Sum_probs=70.8
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..+|.+++..|+...|+++|+++++.+..|..+.. .+.++.+. ++.+...|++.. ..++..|++..+|.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~ 91 (122)
T 2vlu_A 20 LEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAP------VFADLAKKFPNAVFLKVDVDEL--KPIAEQFSVEAMPTF 91 (122)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTTC--HHHHHHTTCCSSSEE
T ss_pred HHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCcEEEEEECCCC--HHHHHHcCCCcccEE
Confidence 35688888888889999999999998877766653 23333332 377777877643 356788999999998
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.++. .| .++.++.|.. .+++.+.|...+
T Consensus 92 ~~~~--~G---~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 92 LFMK--EG---DVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp EEEE--TT---EEEEEEESSC-HHHHHHHHHHHH
T ss_pred EEEe--CC---EEEEEEeCcC-HHHHHHHHHHHh
Confidence 7763 35 3456788988 888877776655
No 42
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=97.03 E-value=0.0041 Score=53.57 Aligned_cols=102 Identities=11% Similarity=0.035 Sum_probs=74.9
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
-..+|.+++ ...|+++|+++.+.+..|..+...+ ..+.+....++.+...|++... .++..|++..+|.++
T Consensus 44 ~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~--~l~~~~~v~~~Pt~~ 114 (148)
T 3p2a_A 44 TAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERAGKVRFVKVNTEAEP--ALSTRFRIRSIPTIM 114 (148)
T ss_dssp CTTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCH--HHHHHTTCCSSSEEE
T ss_pred CHHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcCCceEEEEEECcCCH--HHHHHCCCCccCEEE
Confidence 344566555 6789999999999887777765322 3344444457888888876544 568899999999988
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
++. .| .++.++.|..+.++|...|...+.+.
T Consensus 115 ~~~--~G---~~~~~~~G~~~~~~l~~~l~~~l~~~ 145 (148)
T 3p2a_A 115 LYR--NG---KMIDMLNGAVPKAPFDNWLDEQLSRD 145 (148)
T ss_dssp EEE--TT---EEEEEESSCCCHHHHHHHHHHHHHSC
T ss_pred EEE--CC---eEEEEEeCCCCHHHHHHHHHHHhccc
Confidence 884 35 35668889999999999998877653
No 43
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=97.03 E-value=0.0031 Score=50.39 Aligned_cols=75 Identities=8% Similarity=0.082 Sum_probs=61.1
Q ss_pred CCCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 384 KGPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 384 ~~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..+....|.||..+|+.+.-.+..++||.+|..-|......+.....|+-. .+.+. .+.||.+.|+.++.+|++-
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~--Gk~L~---D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET--TEECC---TTCBTGGGTCCTTCEEEEE
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC--CeECC---CcCcHHHCCCCCCCEEEEE
Confidence 345678999999999999999999999999999998876656667777643 45554 2689999999999998874
No 44
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=97.03 E-value=0.00083 Score=56.69 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=75.8
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEE
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQ 264 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~ 264 (465)
.....||++..+.+..|..|...++....+.+-.+ .+.+...|+++...-.++..|++...|.++++.. | ..+.
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~--G---~ev~ 90 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAG--D---VESG 90 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEET--T---EEEE
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHCCCCCCCEEEEEEC--C---EEEe
Confidence 34788999999999999999988887766544433 3666777777655445677889999999999983 6 3567
Q ss_pred eeecCCChHHHHHHHHHHHHhhcH
Q 012346 265 QVEGPKSPEEMLMILQKVIEESNP 288 (465)
Q Consensus 265 ~i~G~~~~~~~~~~L~~~~~~~~~ 288 (465)
++.|..+++.|...|..++.++.|
T Consensus 91 Ri~G~~~~~~f~~~L~~~l~~~~~ 114 (116)
T 3dml_A 91 RLEGYPGEDFFWPMLARLIGQAEP 114 (116)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHC-
T ss_pred eecCCCCHHHHHHHHHHHHhhcCC
Confidence 999999999999999988876654
No 45
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=97.03 E-value=0.0026 Score=54.05 Aligned_cols=100 Identities=8% Similarity=0.085 Sum_probs=74.4
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..+|.+++..+....|+++|+++.+.+..|..+.. .+.++.+. ++.+...+++.. ..++..|++..+|++
T Consensus 32 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~------~l~~l~~~~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~ 103 (139)
T 3d22_A 32 KERWDQKLSEASRDGKIVLANFSARWCGPSRQIAP------YYIELSENYPSLMFLVIDVDEL--SDFSASWEIKATPTF 103 (139)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTTS--HHHHHHTTCCEESEE
T ss_pred HHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEeCccc--HHHHHHcCCCcccEE
Confidence 45788999999889999999999988877766653 33344332 678888887643 457889999999998
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
+++ . .| .++.++.|. +++++...|...+..
T Consensus 104 ~~~-~-~G---~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 104 FFL-R-DG---QQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp EEE-E-TT---EEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred EEE-c-CC---eEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 877 3 35 356778888 888888777766653
No 46
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.02 E-value=0.0037 Score=52.32 Aligned_cols=102 Identities=9% Similarity=0.061 Sum_probs=74.5
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
..+|.+.+ .+..|+++|+++++.+..|..+...+ +.+.+-+..++.+...|++.. ..++..|++..+|++++
T Consensus 24 ~~~f~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~ 95 (130)
T 2dml_A 24 PSNFNREV---IQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADKH--QSLGGQYGVQGFPTIKI 95 (130)
T ss_dssp TTTHHHHT---TTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTTC--HHHHHHHTCCSSSEEEE
T ss_pred HHHHHHHH---hcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCCC--HHHHHHcCCCccCEEEE
Confidence 34455543 35688999999999999998887544 455555555677777777643 35678899999999999
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
+.. |.. ++.+..|..+.+++++.|...+..
T Consensus 96 ~~~--~~~--~~~~~~G~~~~~~l~~~l~~~l~~ 125 (130)
T 2dml_A 96 FGA--NKN--KPEDYQGGRTGEAIVDAALSALRS 125 (130)
T ss_dssp ESS--CTT--SCEECCSCCSHHHHHHHHHHHHHH
T ss_pred EeC--CCC--eEEEeecCCCHHHHHHHHHHHHhc
Confidence 986 322 345677999999999888877654
No 47
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.02 E-value=0.0031 Score=48.79 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=60.8
Q ss_pred CCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 385 GPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 385 ~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
++...+|.||.++|+.+.-.+..++||.+|..-|......++....|+- ..+.+.+ +.||.+.|+.++++|++-
T Consensus 4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~--~gk~L~d---~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF--KGKALAD---GKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE--TTEECCT---TSBGGGGTCCSSBCCEEE
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE--CCeECCC---CCcHHHcCCCCCCEEEEE
Confidence 3456889999999998889999999999999999887766677777764 4566642 679999999999988764
No 48
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=97.01 E-value=0.0037 Score=50.23 Aligned_cols=93 Identities=9% Similarity=0.034 Sum_probs=66.4
Q ss_pred HHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 181 ~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
...+..|+.+|+++++.+..|..+...+ +.+.+-+..++.+...++++. ..++..|++..+|.+.++. .|.
T Consensus 14 ~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~--~G~-- 84 (107)
T 1dby_A 14 VVLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDES--PNVASEYGIRSIPTIMVFK--GGK-- 84 (107)
T ss_dssp HTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHHTCCSSCEEEEES--SSS--
T ss_pred HHhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhCCceEEEEEECCCC--HHHHHHCCCCcCCEEEEEe--CCE--
Confidence 3445689999999999887777765432 344444445678888877643 3567889999999987773 353
Q ss_pred eeEEeeecCCChHHHHHHHHHHH
Q 012346 261 ALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 261 ~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
++.++.|..+.+++.+.|...+
T Consensus 85 -~~~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 85 -KCETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp -EEEEEESCCCHHHHHHHHHHHC
T ss_pred -EEEEEeCCCCHHHHHHHHHHHh
Confidence 4567789999888888776654
No 49
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=96.99 E-value=0.0039 Score=53.03 Aligned_cols=90 Identities=12% Similarity=-0.030 Sum_probs=69.3
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEE
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQ 264 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~ 264 (465)
..|+++|+++++.+..|..+...+ ..+.+-+..++.++..+++.. ..++..|++..+|+++++... |. ++
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~~~-g~---~~- 119 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDKE--PELARDFGIQSIPTIWFVPMK-GE---PQ- 119 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEECSS-SC---CE-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCCC--HHHHHHcCCCCcCEEEEEeCC-CC---EE-
Confidence 579999999999999998887544 455555556788888887654 357889999999999999762 42 23
Q ss_pred eeecCCChHHHHHHHHHHHH
Q 012346 265 QVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 265 ~i~G~~~~~~~~~~L~~~~~ 284 (465)
+..|..+.+++...|...+.
T Consensus 120 ~~~G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 120 VNMGALSKEQLKGYIDKVLL 139 (141)
T ss_dssp EEESCCCHHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHHHc
Confidence 67799999999888877654
No 50
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=96.96 E-value=0.00088 Score=45.16 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=33.9
Q ss_pred chHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhh
Q 012346 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (465)
Q Consensus 3 ~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~ 42 (465)
+.+++|.+++++ |++. +.|+..|..++||++.|+...|
T Consensus 3 ~~~~~i~~L~~m-Gf~~-~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 3 GLNSKIAQLVSM-GFDP-LEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHT-TCCH-HHHHHHHHHTTTCHHHHHHHHC
T ss_pred hHHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHC
Confidence 467899999999 9887 8999999999999999998654
No 51
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=96.94 E-value=0.0074 Score=52.90 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=68.9
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeE
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl 263 (465)
+..|+++|++..+.+..|..+...+ +.+.+-+..++.|...|++... .++..|++..+|+++++. .| .++
T Consensus 62 ~~~~~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~~--~l~~~~~i~~~Pt~~~~~--~G---~~~ 131 (155)
T 2ppt_A 62 RDDLPLLVDFWAPWCGPCRQMAPQF---QAAAATLAGQVRLAKIDTQAHP--AVAGRHRIQGIPAFILFH--KG---REL 131 (155)
T ss_dssp TCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTST--HHHHHTTCCSSSEEEEEE--TT---EEE
T ss_pred hCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHccCCEEEEEEeCCccH--HHHHHcCCCcCCEEEEEe--CC---eEE
Confidence 6789999999999887787776433 3455555557888888876543 578889999999999884 35 346
Q ss_pred EeeecCCChHHHHHHHHHHHH
Q 012346 264 QQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 264 ~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.++.|..+.+++...|...+.
T Consensus 132 ~~~~G~~~~~~l~~~l~~~l~ 152 (155)
T 2ppt_A 132 ARAAGARPASELVGFVRGKLG 152 (155)
T ss_dssp EEEESCCCHHHHHHHHHHHHC
T ss_pred EEecCCCCHHHHHHHHHHHhc
Confidence 678899999998888877664
No 52
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.92 E-value=0.016 Score=55.59 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=76.0
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
-..+|++.+. ....|+++|++..+.+..|..+...+ +.+.+-...+++|..+|++.. -.+++.|++..+|++.
T Consensus 13 ~~~~f~~~~~--~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~ 85 (287)
T 3qou_A 13 NESNLQQVLE--QSMTTPVLFYFWSERSQHCLQLTPIL---ESLAAQYNGQFILAKLDCDAE--QMIAAQFGLRAIPTVY 85 (287)
T ss_dssp CTTTHHHHHT--TTTTSCEEEEEECTTCTTTTTTHHHH---HHHHHHHTSSSEEEEEETTTC--HHHHHTTTCCSSSEEE
T ss_pred CHHHHHHHHH--hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEEeCccC--HHHHHHcCCCCCCeEE
Confidence 4456777552 33589999999999998888776432 344444445688999888754 3678899999999999
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
++. .| .++.+..|..+.+.+...|...+..
T Consensus 86 ~~~--~G---~~~~~~~g~~~~~~l~~~l~~~lp~ 115 (287)
T 3qou_A 86 LFQ--NG---QPVDGFQGPQPEEAIRALLDXVLPR 115 (287)
T ss_dssp EEE--TT---EEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred EEE--CC---EEEEEeeCCCCHHHHHHHHHHHcCC
Confidence 984 35 3566788999998888888776643
No 53
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=96.92 E-value=0.006 Score=50.58 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=71.1
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
..|+..+..+..++..|+++|++.++.+..|..+...+ +.+.+.+ .++.+...|++.. ..+++.|++..+|+++
T Consensus 8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~ 81 (118)
T 2f51_A 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN-KDVTFIKVDVDKN--GNAADAYGVSSIPALF 81 (118)
T ss_dssp ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTC--HHHHHHTTCCSSSEEE
T ss_pred ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC-CCeEEEEEECCCC--HHHHHhcCCCCCCEEE
Confidence 56677777666667899999999999887777776433 3343333 5788888887654 3578889999999999
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~ 280 (465)
++... |..-.++.++.|..+ +++...+.
T Consensus 82 ~~~~~-~~~G~~~~~~~G~~~-~~l~~~~~ 109 (118)
T 2f51_A 82 FVKKE-GNEIKTLDQFVGADV-SRIKADIE 109 (118)
T ss_dssp EEEEE-TTEEEEEEEEESCCH-HHHHHHHH
T ss_pred EEeCC-CCcceEEEeecCCCH-HHHHHHHH
Confidence 98642 223456788888764 34444443
No 54
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=96.92 E-value=0.0054 Score=48.96 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=65.5
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
+|++++..+ ..|+.+|+++++.+..|..+...+ ..+.+-.. ++.+...|+++. ..+++.|++..+|++.++.
T Consensus 10 ~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~ 81 (105)
T 3m9j_A 10 AFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS-NVIFLEVDVDDC--QDVASESEVKSMPTFQFFK 81 (105)
T ss_dssp HHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TSEEEEEETTTC--HHHHHHTTCCBSSEEEEEE
T ss_pred HHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc-CeEEEEEEhhhh--HHHHHHcCCCcCcEEEEEE
Confidence 355555443 589999999999887777775422 22222222 477777777643 4578889999999999994
Q ss_pred cCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 254 PAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
. | ..+.++.|. +++++.+.|...
T Consensus 82 ~--g---~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 82 K--G---QKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp T--T---EEEEEEESS-CHHHHHHHHHHH
T ss_pred C--C---eEEEEEeCC-CHHHHHHHHHHh
Confidence 3 5 256678898 888887777654
No 55
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=96.91 E-value=0.0037 Score=47.53 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=57.4
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|.||.++|+.+.-.+..++|+.+|..-|......++....|+- ..+.+.+ +.||.+.|+.++++|++-
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d---~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY--SGKQMND---EKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCT---TSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE--CCEECCC---CCcHHHcCCCCCCEEEEE
Confidence 58899999999999999999999999999877655677777764 4556632 679999999999998875
No 56
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=96.90 E-value=0.0053 Score=48.92 Aligned_cols=96 Identities=7% Similarity=0.017 Sum_probs=68.2
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
+|.+.+ .+..|+.+|++.++.+..|..+...+ ..+.+-+..++.+...++++. ..+++.|++..+|++.++.
T Consensus 9 ~~~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~ 80 (105)
T 1fb6_A 9 SWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTDEA--PGIATQYNIRSIPTVLFFK 80 (105)
T ss_dssp THHHHT---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEE
T ss_pred hHHHHH---hcCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhcCceEEEEEcCcch--HHHHHhCCCCcccEEEEEe
Confidence 454443 34578999999999888887776443 344555555688888877643 3577889999999987773
Q ss_pred cCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 254 PAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
.| .++.++.|..+.+++...|...
T Consensus 81 --~g---~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 81 --NG---ERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp --TT---EEEEEEEECCCHHHHHHHHHHH
T ss_pred --CC---eEEEEEecCCCHHHHHHHHHhh
Confidence 35 3466778999988888777653
No 57
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.88 E-value=0.003 Score=52.16 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=60.7
Q ss_pred CCCCC-CCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCe
Q 012346 380 AEPEK-GPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQA 458 (465)
Q Consensus 380 ~EP~~-~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~ 458 (465)
+||.. ......|.||..+|+.+.-.+..++||.+|..-|......+.....|+- ..+.+. .+.||.+.|+.++.
T Consensus 14 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~---D~~tL~~ygI~~g~ 88 (106)
T 1ttn_A 14 PEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF--SGRPLT---DKMKFEELKIPKDY 88 (106)
T ss_dssp -------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE--TTEECC---TTSHHHHCCCSSSC
T ss_pred CCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE--CCEECC---CCCcHHHcCCCCCC
Confidence 34543 2456889999999999999999999999999999987766677777774 355563 26899999999999
Q ss_pred eEEEE
Q 012346 459 SLFVE 463 (465)
Q Consensus 459 ~L~ve 463 (465)
+|+|-
T Consensus 89 ti~lv 93 (106)
T 1ttn_A 89 VVQVI 93 (106)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98874
No 58
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=96.87 E-value=0.0046 Score=51.11 Aligned_cols=95 Identities=12% Similarity=0.156 Sum_probs=66.9
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..+|++++..+ ..|+++|++..+.+..|..+.. .+.++.++ ++.|...|++.. ..+++.|++..+|.+
T Consensus 19 ~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~ 88 (116)
T 3qfa_C 19 KTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKP------FFHSLSEKYSNVIFLEVDVDDC--QDVASECEVKSMPTF 88 (116)
T ss_dssp HHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHH------HHHHHHTTCTTSEEEEEETTTT--HHHHHHTTCCSSSEE
T ss_pred HHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEECCCC--HHHHHHcCCccccEE
Confidence 33456655443 6899999999998877766653 34444442 477888887643 467889999999998
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
+++. .|. ++.++.|. +.+++.+.|...
T Consensus 89 ~~~~--~G~---~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 89 QFFK--KGQ---KVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EEES--SSS---EEEEEESC-CHHHHHHHHHHH
T ss_pred EEEe--CCe---EEEEEcCC-CHHHHHHHHHHh
Confidence 8883 353 46678898 888888777654
No 59
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=96.85 E-value=0.0062 Score=52.11 Aligned_cols=97 Identities=14% Similarity=0.037 Sum_probs=73.4
Q ss_pred HHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCc
Q 012346 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (465)
Q Consensus 179 l~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~ 258 (465)
.+......|+++|++.++.+..|..+...+ +.+.+.+..++.+...+++.. ..++..|++..+|+++++. .|.
T Consensus 17 ~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~--~G~ 89 (140)
T 3hz4_A 17 SQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIATN--PWTAEKYGVQGTPTFKFFC--HGR 89 (140)
T ss_dssp HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTTC--HHHHHHHTCCEESEEEEEE--TTE
T ss_pred HHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCcC--HhHHHHCCCCcCCEEEEEe--CCc
Confidence 335556789999999999988887776543 455555666788888887654 3578889999999988884 352
Q ss_pred ceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 259 RIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 259 ~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
++.+..|..+.++|.+.|...+..
T Consensus 90 ---~~~~~~G~~~~~~l~~~l~~~l~~ 113 (140)
T 3hz4_A 90 ---PVWEQVGQIYPSILKNAVRDMLQH 113 (140)
T ss_dssp ---EEEEEESSCCHHHHHHHHHHHHHH
T ss_pred ---EEEEEcCCCCHHHHHHHHHHHhcc
Confidence 466788999999999888877754
No 60
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=96.84 E-value=0.0048 Score=50.04 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=66.0
Q ss_pred HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceee
Q 012346 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (465)
Q Consensus 183 k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~v 262 (465)
.+..|+.+|+++++.+..|..+...+ ..+.+-...++.+...+++.. ..+++.|++..+|.+.++. .| .+
T Consensus 20 ~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~--~G---~~ 89 (112)
T 1t00_A 20 LKNDKPVLVDFWAAWCGPCRQIAPSL---EAIAAEYGDKIEIVKLNIDEN--PGTAAKYGVMSIPTLNVYQ--GG---EV 89 (112)
T ss_dssp TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEE--TT---EE
T ss_pred hhCCCeEEEEEECCCCHhHHhcCHHH---HHHHHHhcCCeEEEEEEcCCC--HHHHHhCCCCcccEEEEEe--CC---EE
Confidence 35689999999999887777765432 234444445688888887654 3567889999999988773 35 24
Q ss_pred EEeeecCCChHHHHHHHHHHH
Q 012346 263 LQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 263 l~~i~G~~~~~~~~~~L~~~~ 283 (465)
+.++.|..+.+++.+.|...+
T Consensus 90 ~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 90 AKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEEEESCCCHHHHHHHTHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHh
Confidence 667889999998888877665
No 61
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=96.82 E-value=0.0031 Score=53.35 Aligned_cols=100 Identities=8% Similarity=-0.000 Sum_probs=70.8
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
-..+|.+.+ .+..|+++|++.++.+..|..+...+ +.+.+.+..++.+...++++.. .+++.|++..+|.++
T Consensus 28 ~~~~f~~~~---~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~Pt~~ 99 (128)
T 2o8v_B 28 TDDSFDTDV---LKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLL 99 (128)
T ss_dssp CTTTHHHHT---TTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTTTTEEEEEEETTTCC--TTSGGGTCCSSSEEE
T ss_pred ChhhHHHHH---HhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCH--HHHHHcCCCccCEEE
Confidence 344555444 45789999999999887776665332 3444444456888888876433 467889999999999
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
++ . .| .++.+..|..+.+++.+.|...+
T Consensus 100 ~~-~-~G---~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 100 LF-K-NG---EVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp EE-E-TT---EEEEEEESCCCHHHHHHHHHHHH
T ss_pred EE-e-CC---EEEEEEcCCCCHHHHHHHHHHhh
Confidence 98 3 35 34667889999998888877654
No 62
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=96.80 E-value=0.0095 Score=47.47 Aligned_cols=95 Identities=9% Similarity=0.098 Sum_probs=65.2
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
+|.+++.. ...|+.+|+++++.+..|..+...+ ..+.+-.+.++.+...+++.. ..+++.|++..+|++.++.
T Consensus 10 ~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~ 82 (106)
T 1xwb_A 10 DLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKL---VELSTQFADNVVVLKVDVDEC--EDIAMEYNISSMPTFVFLK 82 (106)
T ss_dssp HHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTC--HHHHHHTTCCSSSEEEEEE
T ss_pred HHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHH---HHHHHHhCCCeEEEEEeccch--HHHHHHcCCCcccEEEEEc
Confidence 45555543 3689999999999887777776432 234444445678888887643 3578889999999987763
Q ss_pred cCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 254 PAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
.| .++.+..| .+++++.+.|..
T Consensus 83 --~G---~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 83 --NG---VKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp --TT---EEEEEEES-CCHHHHHHHHHH
T ss_pred --CC---cEEEEEcC-CCHHHHHHHHHH
Confidence 25 34667788 677777666654
No 63
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=96.80 E-value=0.0086 Score=49.74 Aligned_cols=93 Identities=6% Similarity=0.038 Sum_probs=65.5
Q ss_pred HHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCc
Q 012346 180 QRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (465)
Q Consensus 180 ~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~ 258 (465)
+.+....|+++|++.++.+..|..+...+ ..+.+.+.. ++.+..++++.. ..++..|++..+|+++++. .|
T Consensus 27 ~~~l~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d~~--~~~~~~~~v~~~Pt~~~~~--~G- 98 (121)
T 2j23_A 27 KQVTGGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVDEQ--SQIAQEVGIRAMPTFVFFK--NG- 98 (121)
T ss_dssp HHHHSSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETTTC--HHHHHHHTCCSSSEEEEEE--TT-
T ss_pred HHHHcCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECcCC--HHHHHHcCCCcccEEEEEE--CC-
Confidence 33337789999999999999998886433 233333333 388888887654 3467889999999988874 35
Q ss_pred ceeeEEeeecCCChHHHHHHHHHHH
Q 012346 259 RIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 259 ~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.++.+..|. +++++.+.|...+
T Consensus 99 --~~~~~~~G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 99 --QKIDTVVGA-DPSKLQAAITQHS 120 (121)
T ss_dssp --EEEEEEESS-CHHHHHHHHHHHT
T ss_pred --eEEeeEcCC-CHHHHHHHHHHhh
Confidence 346677888 8888777776543
No 64
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=96.78 E-value=0.0044 Score=52.06 Aligned_cols=92 Identities=7% Similarity=0.162 Sum_probs=69.7
Q ss_pred HHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCc
Q 012346 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (465)
Q Consensus 179 l~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~ 258 (465)
+..+..+.|+++|++..+.+..|..+...+ +.+.+.++.++.+...+++... .+++.|++..+|+++++. .|
T Consensus 35 ~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~--~l~~~~~v~~~Pt~~~~~--~G- 106 (128)
T 3ul3_B 35 INGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDKNE--SLARKFSVKSLPTIILLK--NK- 106 (128)
T ss_dssp SSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGGCH--HHHHHTTCCSSSEEEEEE--TT-
T ss_pred HHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCH--HHHHHcCCCCcCEEEEEE--CC-
Confidence 445567899999999999988887776443 4455555567888888876543 678899999999999994 35
Q ss_pred ceeeEEeeecCCChHHHHHHHH
Q 012346 259 RIALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 259 ~~~vl~~i~G~~~~~~~~~~L~ 280 (465)
.++.++.|..+.+++.+.|.
T Consensus 107 --~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 107 --TMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp --EEEEEESSCCCHHHHHHHHT
T ss_pred --EEEEEecCCCCHHHHHHHHH
Confidence 35678889999988877664
No 65
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0098 Score=48.23 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=64.6
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHh-hccceEeecccCchHHHHHHHhCCCCCCCcEEEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-NENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l-~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii 252 (465)
+|.+++.. +...|+.+|+++++.+..|..+...+ +.+.+-+ ..++.+...|++... .++..|++..+|++.++
T Consensus 10 ~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~ 83 (112)
T 3d6i_A 10 QFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQVF---EAISNEPSNSNVSFLSIDADENS--EISELFEISAVPYFIII 83 (112)
T ss_dssp HHHHHHTT-TTTTCCEEEEEECCC--CHHHHHHHH---HHHHHCGGGTTSEEEEEETTTCH--HHHHHTTCCSSSEEEEE
T ss_pred HHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHH---HHHHHhcCCCCEEEEEEecccCH--HHHHHcCCCcccEEEEE
Confidence 45555544 35689999999999998998876432 1222222 236888888876543 56788999999998887
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
. .| .++.++.|. +++++.+.|...+
T Consensus 84 ~--~G---~~~~~~~G~-~~~~l~~~l~~~~ 108 (112)
T 3d6i_A 84 H--KG---TILKELSGA-DPKEYVSLLEDCK 108 (112)
T ss_dssp E--TT---EEEEEECSC-CHHHHHHHHHHHH
T ss_pred E--CC---EEEEEecCC-CHHHHHHHHHHHH
Confidence 3 35 356677887 4556666665554
No 66
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=96.77 E-value=0.0048 Score=46.92 Aligned_cols=69 Identities=9% Similarity=0.152 Sum_probs=57.2
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|.||.++|+.+.-.+..++|+.+|...|......++....|+- ..+.+.+ +.||.+.|+.++++|++-
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d---~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCT---TCBTGGGTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE--CCeECCC---CCcHHHcCCCCCCEEEEE
Confidence 58899999998999999999999999999877655667777765 4556642 689999999999998875
No 67
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.76 E-value=0.001 Score=54.39 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=38.3
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~ 45 (465)
.+++|...+++||++. +.|+..|..++|||+.||...|++.
T Consensus 39 ~eekVk~L~EmtG~se-eeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQ-DECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHTCCCH-HHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhCCCH-HHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4689999999999988 8999999999999999999999875
No 68
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=96.76 E-value=0.0099 Score=48.44 Aligned_cols=92 Identities=10% Similarity=0.082 Sum_probs=64.8
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
.+|++++ +..|+.+|++.++.+..|..+...+ .++.+. ++.+...++++.. .++..|++..+|.++
T Consensus 17 ~~f~~~~----~~~k~vlv~f~a~~C~~C~~~~~~l------~~l~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~Pt~~ 84 (112)
T 1syr_A 17 AEFDSII----SQNELVIVDFFAEWCGPCKRIAPFY------EECSKTYTKMVFIKVDVDEVS--EVTEKENITSMPTFK 84 (112)
T ss_dssp HHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH------HHHHHHCTTSEEEEEETTTTH--HHHHHTTCCSSSEEE
T ss_pred HHHHHHH----ccCCeEEEEEECCCCHHHHHHHHHH------HHHHHHcCCCEEEEEECCCCH--HHHHHcCCCcccEEE
Confidence 3455555 3789999999999887777775432 333332 5888888876543 577889999999977
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
++. .| .++.++.|. +.+++.+.|...
T Consensus 85 ~~~--~G---~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 85 VYK--NG---SSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp EEE--TT---EEEEEEESC-CHHHHHHHHHTT
T ss_pred EEE--CC---cEEEEEeCC-CHHHHHHHHHHh
Confidence 764 35 245678898 888877766543
No 69
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=96.75 E-value=0.0056 Score=47.73 Aligned_cols=71 Identities=11% Similarity=0.191 Sum_probs=59.9
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..+|.||.++|+.+.-.+..++||.+|..-|......++....|+ |.-+.+.+ +.||.++|+.++.+|+|-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~--~~g~~L~d---~~tL~~~~i~~~~~l~l~ 73 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQKWSTLFLL 73 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCT---TSBTGGGTCCTTCEEEEE
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE--ECCEECCC---CCCHHHcCCCCCCEEEEE
Confidence 468999999999999999999999999999988766667778887 45666653 679999999999998875
No 70
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=96.73 E-value=0.012 Score=48.49 Aligned_cols=97 Identities=10% Similarity=0.066 Sum_probs=69.9
Q ss_pred HHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcc
Q 012346 180 QRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQR 259 (465)
Q Consensus 180 ~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~ 259 (465)
....+..|+.+|+++++.+..|..+...+ ..+.+.+..++.+...|++... .++..|++..+|++.++... + .
T Consensus 15 ~~~~~~~~~~lv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~~-~-~ 87 (122)
T 3aps_A 15 EKVLQGKTHWVVDFYAPWCGPCQNFAPEF---ELLARMIKGKVRAGKVDCQAYP--QTCQKAGIKAYPSVKLYQYE-R-A 87 (122)
T ss_dssp HHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTCH--HHHHHTTCCSSSEEEEEEEE-G-G
T ss_pred HHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCcCCH--HHHHHcCCCccceEEEEeCC-C-c
Confidence 44456789999999999887787776433 3455555557888888876543 46788999999999999752 2 2
Q ss_pred eeeEEeeecC----CChHHHHHHHHHHHHhh
Q 012346 260 IALLQQVEGP----KSPEEMLMILQKVIEES 286 (465)
Q Consensus 260 ~~vl~~i~G~----~~~~~~~~~L~~~~~~~ 286 (465)
+.++.|. .+.+++...|...+...
T Consensus 88 ---~~~~~g~~~~~~~~~~l~~~l~~~l~~~ 115 (122)
T 3aps_A 88 ---KKSIWEEQINSRDAKTIAALIYGKLETL 115 (122)
T ss_dssp ---GTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred ---cceeeccccCcCCHHHHHHHHHHHHHhh
Confidence 2233443 78999998888877654
No 71
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.70 E-value=0.0081 Score=47.23 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=60.9
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+...+|.||..+|+.+.-.+..++||.+|..-|......++....|+- ..+.+. .+.||.+.|+.++++|++-
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~--~Gk~L~---d~~tL~~~~i~~g~~i~l~ 77 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF--QGQVLQ---DWLGLGIYGIQDSDTLILS 77 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE--TTEECC---SSSBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE--CCEEcc---CCCCHHHCCCCCCCEEEEE
Confidence 356889999999999999999999999999999988766777888874 455564 2689999999999998875
No 72
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.70 E-value=0.0099 Score=48.11 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=63.8
Q ss_pred CCCeEEEEEECC---CCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeC---CCCcccCCCCccCcccccCCCCCe
Q 012346 385 GPNVTQVLVRFP---NGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSN---FPRVVYSTDKFSLSLKEAGLHPQA 458 (465)
Q Consensus 385 ~~~~~~i~iRlP---~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~---fPr~~~~~~~~~~TL~e~gL~p~~ 458 (465)
+.+.++|.|+.| +|..+.++|..+.||.+|..-|...-..++...+|.-. +|.....-++...||...|+.++.
T Consensus 6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 356899999986 68889999999999999999999877666667776543 565444333458899999999999
Q ss_pred eEEEEe
Q 012346 459 SLFVEL 464 (465)
Q Consensus 459 ~L~ve~ 464 (465)
.|+|..
T Consensus 86 ~I~V~d 91 (97)
T 1wjn_A 86 CLLVRW 91 (97)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999874
No 73
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.0079 Score=50.27 Aligned_cols=94 Identities=6% Similarity=0.026 Sum_probs=70.2
Q ss_pred HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh----ccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCc
Q 012346 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (465)
Q Consensus 183 k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~----~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~ 258 (465)
.+..|+.||+++.+.+..|..+...+ ..+.+.++ .++.+..+|++.. ..++..|++..+|++.++.. |.
T Consensus 22 ~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~--g~ 94 (133)
T 1x5d_A 22 LDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATVN--QVLASRYGIRGFPTIKIFQK--GE 94 (133)
T ss_dssp TTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTTC--CHHHHHHTCCSSSEEEEEET--TE
T ss_pred hcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCCC--HHHHHhCCCCeeCeEEEEeC--CC
Confidence 34679999999999887777766433 34555554 5677877777643 35677899999999999986 53
Q ss_pred ceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 259 RIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 259 ~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
++.+..|..+.+++...|...+...
T Consensus 95 ---~~~~~~G~~~~~~l~~~l~~~~~~~ 119 (133)
T 1x5d_A 95 ---SPVDYDGGRTRSDIVSRALDLFSDN 119 (133)
T ss_dssp ---EEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred ---ceEEecCCCCHHHHHHHHHHHhhcc
Confidence 4667889999999999888877653
No 74
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=96.68 E-value=0.0029 Score=52.13 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=67.4
Q ss_pred HHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 181 ~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
.+.+..|+++|+++++.+..|..+...+ +.+.+-...++.+...+++... .++..|++..+|.++++. .|
T Consensus 25 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~i~~~Pt~~~~~--~g--- 94 (121)
T 2i1u_A 25 DVLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERATDLTVAKLDVDTNP--ETARNFQVVSIPTLILFK--DG--- 94 (121)
T ss_dssp HTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCH--HHHHHTTCCSSSEEEEEE--TT---
T ss_pred HHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCCH--HHHHhcCCCcCCEEEEEE--CC---
Confidence 3345689999999999888887776543 3444555557888888876533 467889999999988774 35
Q ss_pred eeEEeeecCCChHHHHHHHHHHH
Q 012346 261 ALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 261 ~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.++.++.|..+.+++...|...+
T Consensus 95 ~~~~~~~G~~~~~~l~~~l~~~l 117 (121)
T 2i1u_A 95 QPVKRIVGAKGKAALLRELSDVV 117 (121)
T ss_dssp EEEEEEESCCCHHHHHHHTCSCC
T ss_pred EEEEEecCCCCHHHHHHHHHHHH
Confidence 34667889999888777665443
No 75
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=96.65 E-value=0.004 Score=52.95 Aligned_cols=91 Identities=8% Similarity=-0.003 Sum_probs=66.8
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEE
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQ 264 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~ 264 (465)
..|+++|++.++.+..|..+...+ ..+.+-+..++.+...+++... .++..|++..+|.+++++.. |. ++
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~Pt~~~~~~~-G~---~~- 106 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPIL---DELAKEYDGQIVIYKVDTEKEQ--ELAGAFGIRSIPSILFIPME-GK---PE- 106 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCH--HHHHHTTCCSSCEEEEECSS-SC---CE-
T ss_pred CCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCEEEEEEeCCCCH--HHHHHcCCCCCCEEEEECCC-Cc---EE-
Confidence 578999999999887777776433 3444445556888888876543 56788999999999999652 53 23
Q ss_pred eeecCCChHHHHHHHHHHHHh
Q 012346 265 QVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 265 ~i~G~~~~~~~~~~L~~~~~~ 285 (465)
+..|..+.+++...|...+..
T Consensus 107 ~~~G~~~~~~l~~~l~~~~~~ 127 (136)
T 2l5l_A 107 MAQGAMPKASFKKAIDEFLLK 127 (136)
T ss_dssp EEESCCCHHHHHHHHHHHHTS
T ss_pred EEeCCCCHHHHHHHHHHHhhc
Confidence 467889999988888776643
No 76
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=96.62 E-value=0.0012 Score=58.55 Aligned_cols=107 Identities=10% Similarity=0.059 Sum_probs=73.2
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCC--CCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKA--SRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~--~~~P~i~ 250 (465)
.+++++++.+....|++||++..+.+..|..+.. +|.. +.+....++.|..++++..+.. ++..|.+ ..+|+++
T Consensus 33 ~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p-~l~~--~~~~~~~~~~~~~v~~d~~~~~-~~~~~~~~~~~~Pt~~ 108 (164)
T 1sen_A 33 RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKP-KFAE--STEISELSHNFVMVNLEDEEEP-KDEDFSPDGGYIPRIL 108 (164)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHHT--CHHHHHHHTTSEEEEEEGGGSC-SCGGGCTTCSCSSEEE
T ss_pred cCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHH-HHHH--HHHHhhcCCeEEEEEecCCchH-HHHHhcccCCcCCeEE
Confidence 6899999999999999999999999988888765 3322 2233333344444554433221 3455666 6699999
Q ss_pred EEecCCCcceeeEEeeecC----------CChHHHHHHHHHHHHhhc
Q 012346 251 VVMPAANQRIALLQQVEGP----------KSPEEMLMILQKVIEESN 287 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~----------~~~~~~~~~L~~~~~~~~ 287 (465)
+++.. |. ++.++.|. .+.++++..|...++...
T Consensus 109 ~~d~~-G~---~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 151 (164)
T 1sen_A 109 FLDPS-GK---VHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLT 151 (164)
T ss_dssp EECTT-SC---BCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHG
T ss_pred EECCC-CC---EEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhcc
Confidence 99753 42 34556664 788999999988876653
No 77
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=96.62 E-value=0.0074 Score=46.12 Aligned_cols=69 Identities=9% Similarity=0.178 Sum_probs=57.1
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.+|.||. +|+.+.-.+..++||.+|..-|......++....|+ |..+.+.+ +.||.+.|+.++++|+|-
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~--~~gk~L~d---~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI--YSGKILKD---DQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTGGGTCCTTCEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE--ECCeEcCC---CCCHHHcCCCCCCEEEEE
Confidence 5788888 898888999999999999999987766667778887 44566643 579999999999998875
No 78
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0057 Score=49.61 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
....+|.||..+|+.+.-.+..++||.+|..-|......++....|+ |-.+.+. .+.||.+.|+.++.+|++-
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~---D~~tL~~~~i~~g~~i~l~ 92 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLSDYNIQKESTLHLV 92 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE--ETTEECC---TTCBSGGGTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE--ECCEECC---CCCcHHHCCCCCCCEEEEE
Confidence 45689999999999999999999999999999988766666777887 4456664 2679999999999998874
No 79
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=96.60 E-value=0.0084 Score=48.48 Aligned_cols=69 Identities=9% Similarity=0.153 Sum_probs=58.0
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|.||.++|+.+.-.+..++||.+|..-|......++....|+- ..+.+.+ +.||.+.|+.++++|.+-
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~--~Gk~L~D---~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE--TTEECCT---TSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE--CCEECCC---CCCHHHcCCCCCCEEEEE
Confidence 58899999998889999999999999999987766677788874 4566642 689999999999998864
No 80
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=96.60 E-value=0.0067 Score=51.29 Aligned_cols=98 Identities=8% Similarity=-0.002 Sum_probs=63.4
Q ss_pred HHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCc-------------------------hHHH
Q 012346 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-------------------------SEGF 235 (465)
Q Consensus 181 ~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~-------------------------~Eg~ 235 (465)
.+.-.+|+++|++.++.+..|..+...+ ..+.+-+.+.+.+...+++. ....
T Consensus 24 ~~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 100 (148)
T 2b5x_A 24 EQLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDH 100 (148)
T ss_dssp HHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSC
T ss_pred hhhcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCch
Confidence 3344578888888887665554443221 12222233336666666542 1123
Q ss_pred HHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.+++.|++..+|.++||++. | .++.+..|..+.+++.+.|...+..
T Consensus 101 ~~~~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 101 ALTDAFENEYVPAYYVFDKT-G---QLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp HHHHHTCCCCSSEEEEECTT-C---BEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred hHHHHhCCCCCCEEEEECCC-C---cEEEEecCCCCHHHHHHHHHHHHhc
Confidence 57788999999999999863 5 3566778988999998888877654
No 81
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=96.59 E-value=0.0091 Score=47.34 Aligned_cols=71 Identities=24% Similarity=0.262 Sum_probs=59.7
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..+|.||..+|+.+.-.+..++||.+|..-|......++....|+- ..+.+. .+.||.+.|+.++++|.+-
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~--~Gk~L~---D~~tL~~~~I~~g~~i~l~ 74 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF--EGKPLE---DQLPLGEYGLKPLSTVFMN 74 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES--SSSCCC---TTSBHHHHHCSTTCEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE--CCEECC---CCCcHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999988776777788874 455553 2689999999999988875
No 82
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=96.54 E-value=0.013 Score=45.75 Aligned_cols=72 Identities=10% Similarity=0.192 Sum_probs=59.0
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhc---CCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSL---GCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~---~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...+|.||..+|+.+.-.+..++||.+|..-|... ...+.....|+- -.+.+.+ +.||.+.|+.++++|+|-
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~~~i~~g~~i~l~ 78 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKILSD---DVPIRDYRIDEKNFVVVM 78 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE--TTEECCT---TSBGGGGCCCTTSEEEEE
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE--CCEECcC---CCCHHHcCCCCCCEEEEE
Confidence 46789999999999999999999999999999985 444567777764 3566642 679999999999998874
No 83
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.54 E-value=0.0089 Score=48.93 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=63.3
Q ss_pred CCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEEe
Q 012346 385 GPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 385 ~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
+.....|-|+.+.|+.+.-....++||.+|..-|......++....|+ |..+++.+ +.||.+.|+....+|.+..
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi--~~Gk~L~D---~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK--KWYTIFKD---HVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCS---SCBHHHHTCCTTEEEEEEC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE--ECCEECCC---CCCHHHcCCCCCCEEEEEe
Confidence 346789999999999999999999999999999998776667777887 45777743 6799999999999988764
No 84
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.53 E-value=0.014 Score=49.43 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=70.3
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYP 247 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P 247 (465)
-..+|.+++ .+.|++||+++.+.+..|..+...+ ..+.+.+.. ++.+...|++.. ..++..|++..+|
T Consensus 23 ~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~P 93 (140)
T 2dj1_A 23 NDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLKDNDPPIAVAKIDATSA--SMLASKFDVSGYP 93 (140)
T ss_dssp CTTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHHSSSSCCEEEEECTTTC--HHHHHHTTCCSSS
T ss_pred ChHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCceEEEEEeCccc--HHHHHHCCCCccC
Confidence 445676655 3579999999999886666665332 233334443 378888877654 4578889999999
Q ss_pred cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 248 ~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
+++++. .|. +.+..|..+.++|...|...+..
T Consensus 94 t~~~~~--~G~----~~~~~g~~~~~~l~~~l~~~~~~ 125 (140)
T 2dj1_A 94 TIKILK--KGQ----AVDYDGSRTQEEIVAKVREVSQP 125 (140)
T ss_dssp EEEEEE--TTE----EEECCSCCCHHHHHHHHHHHHSS
T ss_pred eEEEEE--CCc----EEEcCCCCCHHHHHHHHHHhcCC
Confidence 999984 253 34667999999999888877653
No 85
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=96.53 E-value=0.012 Score=45.34 Aligned_cols=71 Identities=24% Similarity=0.283 Sum_probs=58.7
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...|.||.++|+.+.-....++||.+|..-|......++....|+- -.+.+.+ +.||.+.|+.++++|++-
T Consensus 4 ~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~--~G~~L~d---~~tL~~~~i~~~~~l~l~ 74 (79)
T 3phx_B 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF--EGKPLED---QLPLGEYGLKPLSTVFMN 74 (79)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBGGGGTCCTTCEEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE--CCEECCC---CCcHHHCCCCCCCEEEEE
Confidence 4689999999999888999999999999999877666667777764 3455642 679999999999998874
No 86
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=96.49 E-value=0.013 Score=45.96 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=59.5
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.....|.||..+|+.+.-.+..++||.+|..-|......++....|+-. .+.+. .+.||.+.|+.++.+|+|-
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~--G~~L~---d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS--GKQMN---DEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET--TEECC---TTSBGGGGTCCTTCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC--CeECC---CCCcHHHcCCCCCCEEEEE
Confidence 4568999999999999999999999999999998766556666777643 34553 2789999999999998874
No 87
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=96.49 E-value=0.027 Score=45.69 Aligned_cols=91 Identities=10% Similarity=0.083 Sum_probs=63.5
Q ss_pred HHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEec
Q 012346 177 DALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMP 254 (465)
Q Consensus 177 eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~ 254 (465)
+-++.+.++.|+++|++.++.+..|..+.. .+.++.+. ++.+...+++.. ..++..|++..+|.++++..
T Consensus 15 ~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p------~l~~l~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~ 86 (109)
T 3f3q_A 15 SEFDSAIAQDKLVVVDFYATWCGPCKMIAP------MIEKFSEQYPQADFYKLDVDEL--GDVAQKNEVSAMPTLLLFKN 86 (109)
T ss_dssp HHHHHHTTSSSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTTC--HHHHHHTTCCSSSEEEEEET
T ss_pred HHHHHHHhcCCEEEEEEECCcCHhHHHHHH------HHHHHHHHCCCCEEEEEECCCC--HHHHHHcCCCccCEEEEEEC
Confidence 344556667999999999998877777653 33344332 466777776543 35788899999999998862
Q ss_pred CCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 255 AANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 255 ~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
| .++.++.|. +++++.+.|..
T Consensus 87 --G---~~~~~~~G~-~~~~l~~~i~~ 107 (109)
T 3f3q_A 87 --G---KEVAKVVGA-NPAAIKQAIAA 107 (109)
T ss_dssp --T---EEEEEEESS-CHHHHHHHHHH
T ss_pred --C---EEEEEEeCC-CHHHHHHHHHh
Confidence 5 356778887 66766665543
No 88
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=96.46 E-value=0.016 Score=47.55 Aligned_cols=100 Identities=10% Similarity=0.078 Sum_probs=63.8
Q ss_pred CCccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCc--hHHHHHHHhCC
Q 012346 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRA--SEGFKMSNSLK 242 (465)
Q Consensus 168 p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~--~Eg~~va~~l~ 242 (465)
..|-.-+..+ +..+....|+++|++..+.+..|..+.. .+.++.++ .+++...+... .+...++..|+
T Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~v~f~a~wC~~C~~~~p------~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
T 1zma_A 12 KDLEVTTVVR-AQEALDKKETATFFIGRKTCPYCRKFAG------TLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYG 84 (118)
T ss_dssp TTSEECCHHH-HHHHHHTTCCEEEEEECTTCHHHHHHHH------HHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHT
T ss_pred hhhhcCCHHH-HHHHHhCCCeEEEEEECCCCccHHHHHH------HHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcC
Confidence 3444334333 3334456789999999998877777653 33344432 34444333221 33456788999
Q ss_pred CCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 243 ~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
+..+|.++++. .|. ++.++.|..+.+++.+.|
T Consensus 85 i~~~Pt~~~~~--~G~---~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 85 IPTVPGFVHIT--DGQ---INVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp CCSSCEEEEEE--TTE---EEEECCTTCCHHHHHHHH
T ss_pred CCCCCeEEEEE--CCE---EEEEecCCCCHHHHHHHh
Confidence 99999998885 252 457788999988877655
No 89
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=96.45 E-value=0.023 Score=47.75 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=65.9
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
+|.+++ ...|+++|++.++.+..|..+... +.++.+ .++.|...|++.. ..++..|++..+|++++
T Consensus 29 ~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~------l~~l~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~i 96 (125)
T 1r26_A 29 QFRNIM----SEDILTVAWFTAVWCGPCKTIERP------MEKIAYEFPTVKFAKVDADNN--SEIVSKCRVLQLPTFII 96 (125)
T ss_dssp HHHHHH----HSSSCEEEEEECTTCHHHHHTHHH------HHHHHHHCTTSEEEEEETTTC--HHHHHHTTCCSSSEEEE
T ss_pred HHHHHH----ccCCEEEEEEECCcCHhHHHHHHH------HHHHHHHCCCCEEEEEECCCC--HHHHHHcCCCcccEEEE
Confidence 455555 678999999999988777666532 333333 3688888888653 35788899999999877
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
+. .| .++.++.| .+++++.+.|...+.
T Consensus 97 ~~--~G---~~~~~~~G-~~~~~l~~~l~~~l~ 123 (125)
T 1r26_A 97 AR--SG---KMLGHVIG-ANPGMLRQKLRDIIK 123 (125)
T ss_dssp EE--TT---EEEEEEES-SCHHHHHHHHHHHHH
T ss_pred Ee--CC---eEEEEEeC-CCHHHHHHHHHHHhc
Confidence 73 35 34667788 588888877776654
No 90
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=96.44 E-value=0.028 Score=44.48 Aligned_cols=92 Identities=7% Similarity=0.075 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEE
Q 012346 175 FMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (465)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii 252 (465)
|++++.. ...|+++|+++++.+..|..+... +.++.+. ++.+...+++.. ..++..|++..+|+++++
T Consensus 10 ~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~------l~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~ 79 (104)
T 2vim_A 10 LEKLINE--NKGRLIVVDFFAQWCGPCRNIAPK------VEALAKEIPEVEFAKVDVDQN--EEAAAKYSVTAMPTFVFI 79 (104)
T ss_dssp HHHHHHT--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTTC--HHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHh--cCCCeEEEEEECCCCHHHHHhhHH------HHHHHHHCCCCEEEEEeccCC--HHHHHHcCCccccEEEEE
Confidence 4555432 368999999999988777776542 3333332 678888887643 356788999999998777
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
. .|. ++.+..| .+++++.+.|...
T Consensus 80 ~--~g~---~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 80 K--DGK---EVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp E--TTE---EEEEEES-SCHHHHHHHHHHH
T ss_pred e--CCc---EEEEEeC-CCHHHHHHHHHhh
Confidence 5 352 4667778 5788777666543
No 91
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=96.42 E-value=0.0099 Score=50.92 Aligned_cols=98 Identities=8% Similarity=0.007 Sum_probs=64.0
Q ss_pred HhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCchH--------------------HHHHHHhC
Q 012346 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASE--------------------GFKMSNSL 241 (465)
Q Consensus 183 k~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~E--------------------g~~va~~l 241 (465)
.-.+|++||++.++.+..|......+ ..+.+-+. .++.+..+++++.. ...+++.|
T Consensus 23 ~~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (151)
T 2f9s_A 23 DLKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAY 99 (151)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHT
T ss_pred HcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhc
Confidence 34578999999987654444333211 12222222 25777777765432 22567889
Q ss_pred CCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhhc
Q 012346 242 KASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (465)
Q Consensus 242 ~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~ 287 (465)
++..+|.++||++. | .++.+..|..+.+++...|...+....
T Consensus 100 ~v~~~P~~~lid~~-G---~i~~~~~G~~~~~~l~~~l~~ll~~~~ 141 (151)
T 2f9s_A 100 DVSPLPTTFLINPE-G---KVVKVVTGTMTESMIHDYMNLIKPGET 141 (151)
T ss_dssp TCCSSCEEEEECTT-S---EEEEEEESCCCHHHHHHHHHHHSCC--
T ss_pred CCCCCCeEEEECCC-C---cEEEEEeCCCCHHHHHHHHHHHHhhhh
Confidence 99999999999873 5 356677799999999998888776543
No 92
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=96.41 E-value=0.0035 Score=53.72 Aligned_cols=96 Identities=5% Similarity=-0.060 Sum_probs=65.4
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCchH-H--------------------HHHHHhC
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASE-G--------------------FKMSNSL 241 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~E-g--------------------~~va~~l 241 (465)
-.+|++||++.++.+..|......+ ..+.+-+. .++.+.+.++++.. . ..+++.|
T Consensus 28 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 104 (152)
T 2lja_A 28 LKGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAY 104 (152)
T ss_dssp TTTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHT
T ss_pred cCCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHc
Confidence 3579999999988777665544322 12222222 25777777666543 1 2577889
Q ss_pred CCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 242 KASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 242 ~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
++..+|.++||++. | .++.+..|..+.+++...|......+
T Consensus 105 ~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~~~~~~ 145 (152)
T 2lja_A 105 LINGIPRFILLDRD-G---KIISANMTRPSDPKTAEKFNELLGLE 145 (152)
T ss_dssp TCCSSCCEEEECTT-S---CEEESSCCCTTCHHHHHHHHHHHTCC
T ss_pred CcCCCCEEEEECCC-C---eEEEccCCCCCHHHHHHHHHHHhccc
Confidence 99999999999973 5 35667778888898888888776543
No 93
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.40 E-value=0.0034 Score=53.87 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=65.1
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeeccc--CchH-------------------HHHHHH
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSI--RASE-------------------GFKMSN 239 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v--~~~E-------------------g~~va~ 239 (465)
+.-.+|+++|++.++.+..|......+ ..+.+-+.. ++.+.+.++ ++.+ ...+++
T Consensus 24 ~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 100 (153)
T 2l5o_A 24 ADLQGKVTLINFWFPSCPGCVSEMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQ 100 (153)
T ss_dssp HHHTTCEEEEEEECTTCTTHHHHHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHH
T ss_pred HHhCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHH
Confidence 334679999999988887776655332 122222322 455555442 2211 235677
Q ss_pred hCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 240 SLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 240 ~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.|++..+|.++||++. | .++.+..|..+.+++...|...+...
T Consensus 101 ~~~i~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~ll~~~ 143 (153)
T 2l5o_A 101 AFGTQVYPTSVLIGKK-G---EILKTYVGEPDFGKLYQEIDTAWRNS 143 (153)
T ss_dssp HHTCCSSSEEEEECSS-S---CCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred HcCCCccCeEEEECCC-C---cEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 8999999999999873 5 24566779899999999998887654
No 94
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=96.39 E-value=0.016 Score=47.33 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=62.7
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
+|++++..+ ..|+++|+++.+.+..|..+.. .+.++-+ .+++|...|++. ...+++.|++..+|++.+
T Consensus 10 ~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p------~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~V~~~PT~~~ 79 (105)
T 3zzx_A 10 DFTKQLNEA--GNKLVVIDFYATWCGPCKMIAP------KLEELSQSMSDVVFLKVDVDE--CEDIAQDNQIACMPTFLF 79 (105)
T ss_dssp HHHHHHHHT--TTSEEEEEEECTTCHHHHHHHH------HHHHHHHHCTTEEEEEEETTT--CHHHHHHTTCCBSSEEEE
T ss_pred HHHHHHHhc--CCCEEEEEEECCCCCCccCCCc------chhhhhhccCCeEEEEEeccc--CHHHHHHcCCCeecEEEE
Confidence 466777655 4689999999998877776643 3333333 267787887764 346889999999999888
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
+-. | ..+.++.|. +++++.+.|
T Consensus 80 ~~~--G---~~v~~~~G~-~~~~l~~~i 101 (105)
T 3zzx_A 80 MKN--G---QKLDSLSGA-NYDKLLELV 101 (105)
T ss_dssp EET--T---EEEEEEESC-CHHHHHHHH
T ss_pred EEC--C---EEEEEEeCc-CHHHHHHHH
Confidence 742 5 357788884 676655444
No 95
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=96.37 E-value=0.017 Score=52.91 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=72.4
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii 252 (465)
.+|..++ ...|++||++.++.+..|..+...+ ..+.+-+..++.+..++++.. ..++..|++..+|+++++
T Consensus 105 ~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~ 175 (210)
T 3apq_A 105 REFDAAV----NSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVDGLLRIGAVNCGDD--RMLCRMKGVNSYPSLFIF 175 (210)
T ss_dssp HHHHHHH----HHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTTC--HHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHH----ccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhcCceEEEEEECCcc--HHHHHHcCCCcCCeEEEE
Confidence 3444444 6789999999999887777776433 344555555688888887654 357888999999999988
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
. .|. ++.+..|..+.+++...|...+..
T Consensus 176 -~-~G~---~~~~~~G~~~~~~l~~~i~~~l~~ 203 (210)
T 3apq_A 176 -R-SGM---AAVKYNGDRSKESLVAFAMQHVRS 203 (210)
T ss_dssp -C-TTS---CCEECCSCCCHHHHHHHHHHHHHC
T ss_pred -E-CCC---ceeEecCCCCHHHHHHHHHHhCcc
Confidence 3 353 356778999999998888877654
No 96
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=96.36 E-value=0.0063 Score=49.01 Aligned_cols=87 Identities=6% Similarity=0.014 Sum_probs=58.1
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCccee
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~ 261 (465)
++.|+.+|+++.+.+..|..+. +.+.++.++ ++.+...|++... .++..|++..+|++.++. .| .
T Consensus 16 ~~~~~vlv~f~a~wC~~C~~~~------p~~~~~~~~~~~~~~~~vd~~~~~--~l~~~~~v~~~Pt~~~~~--~G---~ 82 (105)
T 4euy_A 16 EEQQLVLLFIKTENCGVCDVML------RKVNYVLENYNYVEKIEILLQDMQ--EIAGRYAVFTGPTVLLFY--NG---K 82 (105)
T ss_dssp TCSSEEEEEEEESSCHHHHHHH------HHHHHHHHTCTTEEEEEEEECCC-----------CCCCEEEEEE--TT---E
T ss_pred hcCCCEEEEEeCCCCcchHHHH------HHHHHHHHHcCCceEEEEECCCCH--HHHHhcCCCCCCEEEEEe--CC---e
Confidence 5789999999999887777764 334444443 6778888876543 567889999999999985 35 3
Q ss_pred eEEeeecCCChHHHHHHHHHHH
Q 012346 262 LLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 262 vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
++.++.|..+.+++.+.|...+
T Consensus 83 ~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 83 EILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp EEEEEESSCCHHHHHHHHHTTC
T ss_pred EEEEEeCCcCHHHHHHHHHHhh
Confidence 5678889999999888776543
No 97
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=96.36 E-value=0.0038 Score=53.67 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=66.6
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCch-H--------------------HH
Q 012346 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS-E--------------------GF 235 (465)
Q Consensus 178 Al~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~-E--------------------g~ 235 (465)
.+..+.-.+|+++|++.++.+..|..+. +.+.++.++ ++.+++.++++. + ..
T Consensus 34 ~~~l~~~~gk~~ll~f~~~~C~~C~~~~------~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (156)
T 1kng_A 34 GLDPAAFKGKVSLVNVWASWCVPCHDEA------PLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANG 107 (156)
T ss_dssp CBCGGGGTTSCEEEEEECTTCHHHHHHH------HHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTS
T ss_pred eechHHhCCCEEEEEEEcccCHhHHHHH------HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchh
Confidence 3444444589999999987765554443 344555544 466777665432 1 22
Q ss_pred HHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.+++.|++..+|.+++|++. | .++.++.|..+.+++...|...+.+
T Consensus 108 ~~~~~~~v~~~P~~~~id~~-G---~i~~~~~g~~~~~~l~~~l~~~l~~ 153 (156)
T 1kng_A 108 RASIEWGVYGVPETFVVGRE-G---TIVYKLVGPITPDNLRSVLLPQMEK 153 (156)
T ss_dssp HHHHHTTCCSSCEEEEECTT-S---BEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred HHHHhcCcCccCeEEEEcCC-C---CEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 56778999999999999873 4 3566778999999888888776643
No 98
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=96.35 E-value=0.019 Score=46.21 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=60.2
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCcc-CcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFS-LSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~-~TL~e~gL~p~~~L~ve 463 (465)
.....|.||.++| .+.-.+..++||.+|..-|......++....|+ |..+.+.+ + .||.+.|+.++.+|.|-
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~~tL~~ygI~~gstl~lv 85 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY--YSGIELAD---DYRNLNEYGITEFSEIVVF 85 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE--ETTEEECC---TTSBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE--ECCEECCC---CcccHHHCCCCCCCEEEEE
Confidence 4568899999999 788899999999999999998876677778886 55677743 4 89999999999998774
No 99
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=96.34 E-value=0.0087 Score=51.17 Aligned_cols=100 Identities=9% Similarity=0.027 Sum_probs=64.9
Q ss_pred HHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCc-hHHH-------------------HH
Q 012346 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRA-SEGF-------------------KM 237 (465)
Q Consensus 179 l~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~-~Eg~-------------------~v 237 (465)
+..+.-.+|++||++.++.+..|..+...+ ..+.+-+. .++.+...+++. .+.+ .+
T Consensus 21 ~~l~~~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~ 97 (152)
T 3gl3_A 21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWM---NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQT 97 (152)
T ss_dssp EEGGGGTTSEEEEEEECTTCTHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHH
T ss_pred EeHHHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchh
Confidence 334455689999999998877776665432 22333333 347777776663 3322 57
Q ss_pred HHhCCCCCCCcEEEEecCCCcceeeEEeeecCCC--hHHHHHHHHHHHHh
Q 012346 238 SNSLKASRYPFCAVVMPAANQRIALLQQVEGPKS--PEEMLMILQKVIEE 285 (465)
Q Consensus 238 a~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~--~~~~~~~L~~~~~~ 285 (465)
++.|++..+|.++||++. | .++.+..|..+ .+++...|......
T Consensus 98 ~~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~~~l~~~i~~~~~~ 143 (152)
T 3gl3_A 98 PRLYGVKGMPTSFLIDRN-G---KVLLQHVGFRPADKEALEQQILAALGG 143 (152)
T ss_dssp HHHTTCCSSSEEEEECTT-S---BEEEEEESCCTTTHHHHHHHHHHHTC-
T ss_pred HHHcCCCCCCeEEEECCC-C---CEEEEEccCCCcCHHHHHHHHHHHHcc
Confidence 788999999999999873 4 35666777644 36777777666544
No 100
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=96.33 E-value=0.043 Score=43.91 Aligned_cols=95 Identities=8% Similarity=0.120 Sum_probs=68.1
Q ss_pred CccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc------cceEeecccCchHHHHHHHhCC
Q 012346 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE------NFVSWGGSIRASEGFKMSNSLK 242 (465)
Q Consensus 169 ~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~------~fv~w~~~v~~~Eg~~va~~l~ 242 (465)
.+-..+|.+++. .|+.+|+++++.+..|..+. +.+.++.+. ++.+...|++.. ..++..|+
T Consensus 9 ~l~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~ 75 (111)
T 3uvt_A 9 ALTENNFDDTIA-----EGITFIKFYAPWCGHCKTLA------PTWEELSKKEFPGLAGVKIAEVDCTAE--RNICSKYS 75 (111)
T ss_dssp ECCTTTHHHHHH-----SSEEEEEEECSSCHHHHHHH------HHHHHHHTCCCCC-CCEEEEEEETTTC--HHHHHHTT
T ss_pred EcChhhHHHHhc-----CCcEEEEEECCCChhHHHhh------HHHHHHHHHhhccCCceEEEEEecccc--HhHHHhcC
Confidence 345567888776 67999999998886666654 444555543 466667776643 35788999
Q ss_pred CCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 243 ~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
+..+|++.++.. | .++.+..|..+.+++...|..
T Consensus 76 v~~~Pt~~~~~~--g---~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 76 VRGYPTLLLFRG--G---KKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp CCSSSEEEEEET--T---EEEEEECSCCSHHHHHHHHHH
T ss_pred CCcccEEEEEeC--C---cEEEeccCCcCHHHHHHHHHh
Confidence 999999888842 5 346678899999988877654
No 101
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.31 E-value=0.018 Score=46.24 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=56.7
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhc---CCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSL---GCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~---~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|.||.++|+.+.-.+..++||.+|..-|... ...++....|+- ..+.+.+ +.||.+.|+.++++|+|-
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~ygI~~g~~i~l~ 73 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY--AGKILND---DTALKEYKIDEKNFVVVM 73 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE--TTEECCT---TSBGGGGTCCSSSEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE--CCEECCC---cCcHHHCCCCCCCEEEEE
Confidence 58899999999999999999999999999986 444567778864 4566642 679999999999988764
No 102
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=96.30 E-value=0.04 Score=44.15 Aligned_cols=94 Identities=11% Similarity=0.067 Sum_probs=63.7
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
.+|.+++.. ...|+.+|+++++.+..|..+... +.++.+ .++.+...|++.. ..++..|++..+|.+.
T Consensus 10 ~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~------~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~ 79 (107)
T 1gh2_A 10 PDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPA------FSSMSNKYPQAVFLEVDVHQC--QGTAATNNISATPTFQ 79 (107)
T ss_dssp GGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHH------HHHHHHHCTTSEEEEEETTTS--HHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCChhhHHHHHH------HHHHHHHCCCcEEEEEECccC--HHHHHhcCCCcccEEE
Confidence 456666654 468999999999988777776532 233332 3688888887653 3477889999999988
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
++. .| .++.++.|. +++++.+.|...
T Consensus 80 ~~~--~G---~~~~~~~G~-~~~~l~~~l~~~ 105 (107)
T 1gh2_A 80 FFR--NK---VRIDQYQGA-DAVGLEEKIKQH 105 (107)
T ss_dssp EEE--TT---EEEEEEESS-CHHHHHHHHHHH
T ss_pred EEE--CC---eEEEEEeCC-CHHHHHHHHHHh
Confidence 884 35 245677885 445566555543
No 103
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=96.30 E-value=0.02 Score=48.57 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=66.0
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
..+|.+++. +..+ ++|+++++.+..|..+...+ ..+.+.+..++.|...++++. ..++..|++..+|++++
T Consensus 40 ~~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~ 110 (140)
T 1v98_A 40 EKGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPIL---EELARDHAGRLKVVKVNVDEH--PGLAARYGVRSVPTLVL 110 (140)
T ss_dssp ------------CCCE-EEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTC--HHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCCC--HHHHHHCCCCccCEEEE
Confidence 344544443 3445 89999999887887776433 344445555688888887654 35778899999999988
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
+. .| .++.++.|..+.+++.+.|...++
T Consensus 111 ~~--~G---~~~~~~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 111 FR--RG---APVATWVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp EE--TT---EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred Ee--CC---cEEEEEeCCCCHHHHHHHHHHHHc
Confidence 84 35 346678899999988888877664
No 104
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=96.28 E-value=0.011 Score=49.06 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=59.8
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCch---------------------HHHHHHHh
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRAS---------------------EGFKMSNS 240 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~---------------------Eg~~va~~ 240 (465)
-.+|+++|++.++.+..|..+. +.+.++.++ ++.+...++++. ....+++.
T Consensus 23 ~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 96 (136)
T 1zzo_A 23 LLGKPAVLWFWAPWCPTCQGEA------PVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWAN 96 (136)
T ss_dssp GTTSCEEEEEECTTCHHHHHHH------HHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHH
T ss_pred hCCCeEEEEEEcCCChhHHHHH------HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHH
Confidence 3568888888887665554443 233333332 566666665431 12356778
Q ss_pred CCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 241 l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
|++..+|.+++|++. |. ++ +..|..+.+++...|...+.
T Consensus 97 ~~i~~~P~~~~id~~-g~---i~-~~~g~~~~~~l~~~l~~~l~ 135 (136)
T 1zzo_A 97 FGVTQQPAYAFVDPH-GN---VD-VVRGRMSQDELTRRVTALTS 135 (136)
T ss_dssp TTCCSSSEEEEECTT-CC---EE-EEESCCCHHHHHHHHHHHC-
T ss_pred cCCCCCceEEEECCC-CC---EE-EEecCCCHHHHHHHHHHHhc
Confidence 999999999999863 42 45 77899999998888876653
No 105
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=96.27 E-value=0.0022 Score=64.64 Aligned_cols=40 Identities=38% Similarity=0.573 Sum_probs=36.6
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
..+++.+|-+|||++. ..|.+||+..+|+||.||..||..
T Consensus 45 ~~~~~~~f~~~~~~~~-~~~~~~l~~~~w~~~~~~~~~~~~ 84 (362)
T 4gew_A 45 DEQKLHEFAIITATDE-AFAQSILQDVDWDLKKALDVFYGS 84 (362)
T ss_dssp HHHHHHHHHHHHTCCH-HHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhCCcH-HHHHHHHhhcCchHHHHHHHHcCC
Confidence 4579999999999766 899999999999999999999964
No 106
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=96.25 E-value=0.014 Score=46.73 Aligned_cols=70 Identities=10% Similarity=0.195 Sum_probs=58.0
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..|.||..+|+.+.-.+..++||.+|..-|......+.....|+ |-.+.+.+ +.||.++|+.++.+|+|-
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~--~~G~~L~d---~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTGGGTCCTTCEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE--ECCEECCC---CCcHHHcCCCCCCEEEEE
Confidence 36889999999998899999999999999988766666777777 44566642 679999999999998875
No 107
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.25 E-value=0.025 Score=44.61 Aligned_cols=74 Identities=14% Similarity=0.027 Sum_probs=59.9
Q ss_pred CCCeEEEEEECCCC-ceEEE-EecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 385 GPNVTQVLVRFPNG-ERKER-RFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 385 ~~~~~~i~iRlP~G-~r~~r-rF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
+.....|.||.++| +.+.- .+..++||.+|..-|......++....|+-. .+.+. .+.||.+.|+.++.+|++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~--gk~L~---d~~tL~~~~i~~g~~i~l 78 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR--GKQLE---NGYTLFDYDVGLNDIIQL 78 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET--TEECC---SSSBHHHHTCCTTCEEEE
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC--CeECC---CCCCHHHCCCCCCCEEEE
Confidence 34568899999999 67877 5999999999999999877666777888753 45553 268999999999998877
Q ss_pred E
Q 012346 463 E 463 (465)
Q Consensus 463 e 463 (465)
-
T Consensus 79 ~ 79 (89)
T 1wy8_A 79 L 79 (89)
T ss_dssp E
T ss_pred E
Confidence 4
No 108
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=96.24 E-value=0.015 Score=44.62 Aligned_cols=71 Identities=13% Similarity=0.021 Sum_probs=57.4
Q ss_pred eEEEEEECCCCceE-EEE-ecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERK-ERR-FHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~-~rr-F~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...|.||..+|+.+ .-. +..++|+.+|..-|......++....|+- ..+.+. .+.||.+.|+.++++|++-
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~--~g~~L~---d~~tL~~~~i~~g~~i~l~ 74 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY--RGKQME---DGHTLFDYEVRLNDTIQLL 74 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECC---TTCBTTTTTCCTTCEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE--CCEECC---CCCCHHHcCCCCCCEEEEE
Confidence 46789999999875 677 99999999999999887666677777764 355664 2689999999999988874
No 109
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=96.23 E-value=0.005 Score=51.66 Aligned_cols=97 Identities=8% Similarity=-0.001 Sum_probs=64.2
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCC--------------CchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHH
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHP--------------DTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKM 237 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~--------------~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~v 237 (465)
..+|.+.+ .+..|+.+|++.++.+. .|..+...+ +.+.+-+..++.+...|++... .+
T Consensus 10 ~~~f~~~~---~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~---~~l~~~~~~~~~~~~vd~d~~~--~l 81 (123)
T 1oaz_A 10 DDSFDTDV---LKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GT 81 (123)
T ss_dssp STTHHHHT---TSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHH---TTC-------CEEEEEETTSCT--TT
T ss_pred hhhHHHHH---HhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHH---HHHHHHhcCCeEEEEEECCCCH--HH
Confidence 34555443 46789999999999888 665554321 1222333346788888876543 46
Q ss_pred HHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 238 SNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 238 a~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
+..|++..+|+++++ . .|. ++.++.|..+.+++.+.|..
T Consensus 82 ~~~~~v~~~Pt~~~~-~-~G~---~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 82 APKYGIRGIPTLLLF-K-NGE---VAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp GGGGTCCBSSEEEEE-E-SSS---EEEEEESCCCHHHHHHHHTT
T ss_pred HHHcCCCccCEEEEE-E-CCE---EEEEEeCCCCHHHHHHHHHH
Confidence 788999999999998 3 353 45678899998888877654
No 110
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=96.21 E-value=0.032 Score=45.78 Aligned_cols=91 Identities=8% Similarity=0.074 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 176 MDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 176 ~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
.+.++.+.+..|+++|++.++.+..|..+.. .+.++.++ ++.+...|++.. ..+++.|++..+|.++++.
T Consensus 20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p------~l~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~ 91 (114)
T 2oe3_A 20 LTEFRNLIKQNDKLVIDFYATWCGPCKMMQP------HLTKLIQAYPDVRFVKCDVDES--PDIAKECEVTAMPTFVLGK 91 (114)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHHTHH------HHHHHHHHCTTSEEEEEETTTC--HHHHHHTTCCSBSEEEEEE
T ss_pred HHHHHHHHhCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEECCCC--HHHHHHCCCCcccEEEEEe
Confidence 3444555567899999999988866666553 33344332 377778877653 3578889999999987763
Q ss_pred cCCCcceeeEEeeecCCChHHHHHHHH
Q 012346 254 PAANQRIALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~~~~~~~~L~ 280 (465)
.| .++.++.|.. ++++.+.|.
T Consensus 92 --~G---~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 92 --DG---QLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp --TT---EEEEEEESSC-HHHHHHHHH
T ss_pred --CC---eEEEEEeCCC-HHHHHHHHH
Confidence 35 3566788887 776665553
No 111
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=96.18 E-value=0.024 Score=44.78 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=58.1
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+...+|.||..+|+.+.-.+..++||.+|...|......+.....|+- -.+.+.+ +.||.++|+ .+.+|++-
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~--~Gk~L~d---~~tL~~~~i-~g~~i~l~ 74 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY--QGRVLQD---DKKLQEYNV-GGKVIHLV 74 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBGGGGTC-TTEEEEEE
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE--CCeECCC---CCCHHHcCC-CCcEEEEE
Confidence 357889999999999988999999999999999877655667777764 3556642 679999999 78887763
No 112
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=96.16 E-value=0.0042 Score=52.68 Aligned_cols=95 Identities=8% Similarity=0.075 Sum_probs=62.1
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCc-hHHH---------H-------------H
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRA-SEGF---------K-------------M 237 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~-~Eg~---------~-------------v 237 (465)
+.-.+|+++|++.++.+..|......+- .+.+-+.+ ++.+.+.++++ .+.+ . +
T Consensus 27 ~~~~gk~vll~f~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 103 (148)
T 3hcz_A 27 YDVQAKYTILFFWDSQCGHCQQETPKLY---DWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDF 103 (148)
T ss_dssp GGCCCSEEEEEEECGGGCTTCSHHHHHH---HHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCH
T ss_pred HHcCCCEEEEEEECCCCccHHHHHHHHH---HHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhH
Confidence 3346799999999887766665543221 12222333 47777777763 3311 1 6
Q ss_pred HHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 238 SNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 238 a~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
+..|++..+|+++||++. | .++.+..|..+.++++..+...+
T Consensus 104 ~~~~~i~~~P~~~lid~~-G---~i~~~~~g~~~~~~~l~~l~~~l 145 (148)
T 3hcz_A 104 KITYDIYATPVLYVLDKN-K---VIIAKRIGYENLDDFLVQYEKSL 145 (148)
T ss_dssp HHHHCCCSSCEEEEECTT-C---BEEEESCCGGGHHHHHHHHHHHH
T ss_pred HHhcCcCCCCEEEEECCC-C---cEEEecCCHHHHHHHHHHHHHHh
Confidence 778999999999999873 4 35566677777777777776554
No 113
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=96.16 E-value=0.0062 Score=52.27 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=61.9
Q ss_pred HHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCc--hHHH-------------------HHH
Q 012346 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRA--SEGF-------------------KMS 238 (465)
Q Consensus 181 ~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~--~Eg~-------------------~va 238 (465)
.+.-.+|++||++.++.+..|......+ ..+.+-+.. ++.+.+.+++. .+.. .++
T Consensus 23 l~~~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 99 (154)
T 3kcm_A 23 LSDLKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVG 99 (154)
T ss_dssp GGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHH
T ss_pred hhhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHH
Confidence 3444679999999987765554443322 122222323 56677776665 3332 277
Q ss_pred HhCCCCCCCcEEEEecCCCcceeeEEeeecCC--ChHHHHHHHHHHHHhh
Q 012346 239 NSLKASRYPFCAVVMPAANQRIALLQQVEGPK--SPEEMLMILQKVIEES 286 (465)
Q Consensus 239 ~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~--~~~~~~~~L~~~~~~~ 286 (465)
..|++..+|.++||+.. | .++.++.|.. +.+++...|.....+.
T Consensus 100 ~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~~~l~~~l~~l~~~~ 145 (154)
T 3kcm_A 100 KLYGTTGVPETFVIDRH-G---VILKKVVGAMEWDHPEVIAFLNNELSKA 145 (154)
T ss_dssp HHHTCCSBCEEEEECTT-S---BEEEEEESCCCTTSHHHHHHHHTC----
T ss_pred HHhCCCCCCeEEEECCC-C---cEEEEEcCCCccccHHHHHHHHHHHHHh
Confidence 88999999999999973 5 3567777875 5668888777665544
No 114
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.14 E-value=0.0048 Score=44.64 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=36.6
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
.+++|.+++++ |+.+.+.++..|..++||++.||...|.+..
T Consensus 9 ~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 9 FQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 46789999998 9988667899999999999999999997543
No 115
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.13 E-value=0.024 Score=46.55 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=58.2
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+...+|.||..+|+ +.-.+..++||.+|...|............|+.. .+.+. .+.||.++|+..+.+|+|-
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~---D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA--GKILK---DPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET--TEECC---TTSCHHHHTCCTTEEEEEE
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC--CEECC---CcCcHHHcCCCCCCEEEEE
Confidence 45688999999996 6889999999999999998766556677778643 56663 2689999999999988875
No 116
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=96.12 E-value=0.0022 Score=53.62 Aligned_cols=99 Identities=9% Similarity=0.140 Sum_probs=71.9
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
.+|.+++..++...|+++|+++++.+..|..+.. .+.++.+. ++.+...+++.. ..+++.|++..+|+++
T Consensus 23 ~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~ 94 (130)
T 1wmj_A 23 DEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAP------VFAEYAKKFPGAVFLKVDVDEL--KEVAEKYNVEAMPTFL 94 (130)
T ss_dssp HHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHH------HHHHHHHHCTTBCCEECCTTTS--GGGHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHH------HHHHHHHHCCCCEEEEEeccch--HHHHHHcCCCccceEE
Confidence 5689999999989999999999999988887663 33444443 577777777643 3467789999999987
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
++ . .|. ++.++.| .+++++...|...+..
T Consensus 95 ~~-~-~g~---~~~~~~g-~~~~~l~~~l~~~~~~ 123 (130)
T 1wmj_A 95 FI-K-DGA---EADKVVG-ARKDDLQNTIVKHVGA 123 (130)
T ss_dssp BC-T-TTT---CCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred EE-e-CCe---EEEEEeC-CCHHHHHHHHHHHHhc
Confidence 76 2 353 3566778 4777777777766543
No 117
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=96.09 E-value=0.047 Score=44.55 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=64.7
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
.+|.+++.. ...|+++|+++++.+..|..+.. .+.++.++ ++.+...|++.. ..+++.|++..+|++.+
T Consensus 22 ~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~ 91 (117)
T 2xc2_A 22 GDLESLLEQ--HKNKLVVVDFFATWCGPCKTIAP------LFKELSEKYDAIFVKVDVDKL--EETARKYNISAMPTFIA 91 (117)
T ss_dssp THHHHHHHH--TTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTSSSEEEEEETTTS--HHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHcCcEEEEEECCcc--HHHHHHcCCCccceEEE
Confidence 456666653 36899999999998877766653 34444444 677777777543 45788999999999877
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
+. .| .++.++.| .+++++.+.|..
T Consensus 92 ~~--~G---~~~~~~~G-~~~~~l~~~l~~ 115 (117)
T 2xc2_A 92 IK--NG---EKVGDVVG-ASIAKVEDMIKK 115 (117)
T ss_dssp EE--TT---EEEEEEES-SCHHHHHHHHHH
T ss_pred Ee--CC---cEEEEEeC-CCHHHHHHHHHH
Confidence 73 35 34667788 577777666654
No 118
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.09 E-value=0.0081 Score=41.92 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=34.6
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
.+++|.+++++ |+.|.+.++..|..++||++.||...|.+
T Consensus 7 ~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 7 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 45789999998 88776778999999999999999988763
No 119
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.09 E-value=0.024 Score=45.40 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=57.6
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...++|.||..+|+.+...+..++||.+|..-|.... +....|+ |-.+.+.++ +.||.+.|+.++.+|+|-
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi--~~Gk~L~D~--~~tL~~y~i~~g~~i~l~ 75 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLI--YQGRLLQDP--ARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEE--ETTEECCCS--SCBTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEE--ECCEEccCC--cCCHHHcCCCCCCEEEEE
Confidence 3568899999999999999999999999999998765 4567776 445666432 389999999999998874
No 120
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=96.04 E-value=0.028 Score=46.58 Aligned_cols=72 Identities=15% Similarity=0.096 Sum_probs=59.5
Q ss_pred CeEEEEEECC---CCceEEEEecC-CCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 387 NVTQVLVRFP---NGERKERRFHS-TAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 387 ~~~~i~iRlP---~G~r~~rrF~~-~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
+.++|.|++| +|+.+...+.. ++||.+|..-|......++....|+- -.+.+. .+.||.+.|+.++.+|+|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~--~Gk~L~---D~~tL~~y~I~~g~~l~l 100 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG--KAGFLK---DNMSLAHYNVGAGEILTL 100 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC--SSSBCC---TTSBTTTTTCSSSCEEEE
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE--CCEECC---CCCcHHHCCCCCCCEEEE
Confidence 4689999999 89889999998 99999999999988766677777764 344443 268999999999999887
Q ss_pred E
Q 012346 463 E 463 (465)
Q Consensus 463 e 463 (465)
-
T Consensus 101 ~ 101 (111)
T 1we6_A 101 S 101 (111)
T ss_dssp E
T ss_pred E
Confidence 5
No 121
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=96.03 E-value=0.019 Score=45.43 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=58.6
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...|.++..+|+.+.-.+..++||.+|..-|......++....|+- ..+.+.+ +.||.+.|+.++++|.+-
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~--~Gk~L~D---~~tL~~~gi~~g~~i~l~ 79 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQKESTLHLV 79 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCT---TSBSGGGTCCTTCEEEEE
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE--CCEECCC---CCcHHHcCCCCCCEEEEE
Confidence 3578999999999999999999999999999887666677778764 4566642 689999999999988774
No 122
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=96.03 E-value=0.02 Score=49.13 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=62.7
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh----ccceEeecccCchH----------------------HHHH
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRASE----------------------GFKM 237 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~----~~fv~w~~~v~~~E----------------------g~~v 237 (465)
-.+|++||++..+.+..|.... +.+.++.+ .++.+.+.++++.+ ...+
T Consensus 22 ~~gk~vlv~F~a~wC~~C~~~~------~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (151)
T 3raz_A 22 LKAPVRIVNLWATWCGPCRKEM------PAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNF 95 (151)
T ss_dssp CCSSEEEEEEECTTCHHHHHHH------HHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHH
T ss_pred hCCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHH
Confidence 3578888888877654444433 23333332 35667776665433 3456
Q ss_pred HHhCC--CCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 238 SNSLK--ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 238 a~~l~--~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
+..|+ +..+|.++||++. | .++.+..|..+.+++...|..+...
T Consensus 96 ~~~~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~l~~~ 141 (151)
T 3raz_A 96 MKTYGNTVGVLPFTVVEAPK-C---GYRQTITGEVNEKSLTDAVKLAHSK 141 (151)
T ss_dssp HHTTTCCSCCSSEEEEEETT-T---TEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred HHHhCCccCCCCEEEEECCC-C---cEEEEECCCCCHHHHHHHHHHHHHH
Confidence 77788 8899999999974 5 2567788999999988888776654
No 123
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=96.01 E-value=0.018 Score=47.91 Aligned_cols=89 Identities=13% Similarity=0.012 Sum_probs=59.9
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCc-hH-------------------HHHHHHhC
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRA-SE-------------------GFKMSNSL 241 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~-~E-------------------g~~va~~l 241 (465)
-.+|+++|++.++.+..|.... +.+.++.+. ++.+++.++++ .+ ...+++.|
T Consensus 22 ~~~k~~lv~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 95 (136)
T 1lu4_A 22 LQGKPAVLWFWTPWCPFCNAEA------PSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARY 95 (136)
T ss_dssp GTTSCEEEEEECTTCHHHHHHH------HHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHT
T ss_pred hCCCEEEEEEECCcChhHHHHH------HHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhc
Confidence 3578888888887665554443 233343332 67777777655 11 23567789
Q ss_pred CCCCCCcEEEEecCCCcceeeEEeee---cCCChHHHHHHHHHHH
Q 012346 242 KASRYPFCAVVMPAANQRIALLQQVE---GPKSPEEMLMILQKVI 283 (465)
Q Consensus 242 ~~~~~P~i~ii~~~~~~~~~vl~~i~---G~~~~~~~~~~L~~~~ 283 (465)
++..+|.+++|++. |. ++ +.. |..+.+++.+.|...+
T Consensus 96 ~i~~~P~~~lid~~-G~---i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 96 NVPWQPAFVFYRAD-GT---ST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp TCCSSSEEEEECTT-SC---EE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred CCCCCCEEEEECCC-Cc---EE-EEEcCCCccCHHHHHHHHHHHh
Confidence 99999999999873 42 44 777 8889998888877654
No 124
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=96.00 E-value=0.029 Score=44.10 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=58.4
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+...+|.||..+|+.+.-.+..++|+.+|...|......++....|+- -.+.+.+ +.||.+.|+ ++.+|++-
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY--QGRVLQD---DKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBGGGGTC-TTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE--CCEECCC---CCcHHHcCC-CCcEEEEE
Confidence 357899999999999888999999999999999877655667777764 3456643 679999999 78888763
No 125
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.00 E-value=0.015 Score=45.35 Aligned_cols=71 Identities=8% Similarity=0.136 Sum_probs=58.3
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..+|.||.++|+.+.-.+..++||.+|..-|......++....|+.. -+.+.+ +.||.++|+.++.+|+|-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~--g~~L~d---~~tL~~~~i~~~~~i~l~ 73 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLED---GRTLSDYNIHNHSALYLL 73 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET--BEECCT---TCBTTTTTCCTTCEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC--CeECCC---CCCHHHCCCCCCCEEEEE
Confidence 35789999999999999999999999999998876666777888753 455532 679999999999998875
No 126
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.98 E-value=0.021 Score=43.34 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=38.5
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCCCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPPP 48 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~~~ 48 (465)
+-.|+|+.+|||+.|...-...|..++.||..||.-.-+.....
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~~ 68 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKT 68 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccccC
Confidence 44789999999999998899999999999999999988765443
No 127
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=95.96 E-value=0.026 Score=45.96 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=60.1
Q ss_pred CCCCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 383 EKGPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 383 ~~~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
+..+...+|.||..+|+ ..-.+..++||.+|..-|......++....|+- ..+.+.+ +.||.+.|+..+.+|+|
T Consensus 17 ~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D---~~tL~~ygI~~gstI~l 90 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF--AGKILKD---PDSLAQCGVRDGLTVHL 90 (100)
T ss_dssp SCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBHHHHTCCTTCEEEE
T ss_pred CCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE--CCEECCC---cCcHHHCCCCCCCEEEE
Confidence 33457899999999996 688999999999999999877655667777764 3566642 67999999999998877
Q ss_pred E
Q 012346 463 E 463 (465)
Q Consensus 463 e 463 (465)
-
T Consensus 91 ~ 91 (100)
T 1yqb_A 91 V 91 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 128
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=95.94 E-value=0.043 Score=44.50 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=62.9
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCccee
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~ 261 (465)
.+.|..+|++..+.+..|..+.. .+.++... ++.+...|++. ...++..|++..+|++.++. .|.
T Consensus 17 ~~~~~~vv~f~a~wC~~C~~~~~------~l~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~--~G~--- 83 (110)
T 2l6c_A 17 EGLSDAIVFFHKNLCPHCKNMEK------VLDKFGARAPQVAISSVDSEA--RPELMKELGFERVPTLVFIR--DGK--- 83 (110)
T ss_dssp TTCSEEEEEEECSSCSTHHHHHH------HHHHHHTTCTTSCEEEEEGGG--CHHHHHHTTCCSSCEEEEEE--SSS---
T ss_pred HcCCCEEEEEECCCCHhHHHHHH------HHHHHHHHCCCcEEEEEcCcC--CHHHHHHcCCcccCEEEEEE--CCE---
Confidence 45689999999999988888753 23333333 56677777643 34578889999999999983 353
Q ss_pred eEEeeecCCChHHHHHHHHHHHHh
Q 012346 262 LLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 262 vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
++.++.|..++++|...|....+.
T Consensus 84 ~v~~~~G~~~~~~l~~~~~~~~~~ 107 (110)
T 2l6c_A 84 VAKVFSGIMNPRELQALYASIHHH 107 (110)
T ss_dssp EEEEEESCCCHHHHHHHHHTC---
T ss_pred EEEEEcCCCCHHHHHHHHHHHhhh
Confidence 467888999999888777655443
No 129
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.93 E-value=0.014 Score=44.99 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=37.1
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
.+++|.|++++ |+.+.+.++..|..++||++.||...|.+..
T Consensus 29 ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 29 YQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 46799999998 8877678899999999999999999998654
No 130
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.91 E-value=0.023 Score=45.62 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=58.1
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+..++|.||.. |+.+.-.+..++||.+|..-|......+.....|+- -.+.+. .+.||.+.|+.++.+|+|-
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~--~Gk~L~---D~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF--TGKILR---DQDILSQRGILDGSTVHVV 86 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE--TTEECC---TTSCHHHHTCCTTEEEECC
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE--CCEECC---CcCCHHHCCCCCCCEEEEE
Confidence 45788999998 989999999999999999999987766666666653 355663 2689999999999988763
No 131
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=95.90 E-value=0.0062 Score=54.31 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=74.1
Q ss_pred hCCCCCCccccCHH---HHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCc-hHH----
Q 012346 163 YGNVKPNFVSEGFM---DALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-SEG---- 234 (465)
Q Consensus 163 yg~~~p~f~~gs~~---eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~-~Eg---- 234 (465)
-|...|.|---+.+ ..+..+.-.+|++||++..+.+.. |+.. .+.+.++.++++.+++.++++ .+.
T Consensus 32 ~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~----C~~~--~~~l~~l~~~~v~vv~vs~~d~~~~~~~~ 105 (176)
T 3kh7_A 32 IGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPS----CRVE--HPELTRLAEQGVVIYGINYKDDNAAAIKW 105 (176)
T ss_dssp TTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHH----HHHH--HHHHHHHHHTTCEEEEEEESCCHHHHHHH
T ss_pred cCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHH----HHHH--HHHHHHHHHCCCEEEEEeCCCCHHHHHHH
Confidence 35556666211111 223344455899999999876544 4433 255667766677777777532 221
Q ss_pred ----------------HHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 235 ----------------FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 235 ----------------~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
..++..|++..+|..+||++. | .++.+..|..+.+++...|...+++
T Consensus 106 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~~l~~ 168 (176)
T 3kh7_A 106 LNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQ-G---IIRHKIVGVVDQKVWREQLAPLYQQ 168 (176)
T ss_dssp HHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTT-C---BEEEEEESCCCHHHHHHHTHHHHHH
T ss_pred HHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCC-C---eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 246677889999999999973 5 3667788999999998888877754
No 132
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=95.88 E-value=0.026 Score=48.55 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=64.9
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh----ccceEeeccc-------CchHHH-----------
Q 012346 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSI-------RASEGF----------- 235 (465)
Q Consensus 178 Al~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~----~~fv~w~~~v-------~~~Eg~----------- 235 (465)
.+..+.-.+|++||++..+.+..|... .+ +.+.++.+ .++.+.+.++ ++.+..
T Consensus 22 ~~~l~~~~gk~vlv~F~a~~C~~C~~e---~~--~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (160)
T 3lor_A 22 GLSNEDLRGKVVVVEVFQMLCPGCVNH---GV--PQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKF 96 (160)
T ss_dssp CCCHHHHTTSEEEEEEECTTCHHHHHT---HH--HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCS
T ss_pred ccCHHHhCCCEEEEEEEcCCCcchhhh---hh--HHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCC
Confidence 344444468899999988766444431 11 22333332 2466666654 222221
Q ss_pred --------------HHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 236 --------------KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 236 --------------~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.+++.|++..+|..+||++. | .++.+..|..+.+++...|...+.+.
T Consensus 97 ~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~~ll~~~ 157 (160)
T 3lor_A 97 PVAVDMPREGQRIPSTMKKYRLEGTPSIILADRK-G---RIRQVQFGQVDDFVLGLLLGSLLSET 157 (160)
T ss_dssp CEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTT-S---BEEEEEESCCCHHHHHHHHHHHHTCC
T ss_pred cEEECCccccchhhhHHHhcccCccceEEEECCC-C---cEEEEecCcCCHHHHHHHHHHHHhcc
Confidence 27788999999999999973 5 35677889999999998888877653
No 133
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=95.88 E-value=0.053 Score=46.91 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=67.5
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
+|.+++..+ ..|+++|++..+.+..|..+.. .+.++.+ .++.|..+|++... .+++.|++..+|.+++
T Consensus 22 ~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~Pt~~~ 91 (153)
T 2wz9_A 22 QFEELLRLK--AKSLLVVHFWAPWAPQCAQMNE------VMAELAKELPQVSFVKLEAEGVP--EVSEKYEISSVPTFLF 91 (153)
T ss_dssp HHHHHHHHT--TTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTTSH--HHHHHTTCCSSSEEEE
T ss_pred HHHHHHHhc--CCCeEEEEEECCCCHhHHHHHH------HHHHHHHHcCCeEEEEEECCCCH--HHHHHcCCCCCCEEEE
Confidence 455555432 3899999999998877776653 3334433 36888888876543 5678899999999999
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
+. .|. ++.++.|. +++++...|...+..
T Consensus 92 ~~--~G~---~~~~~~G~-~~~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 92 FK--NSQ---KIDRLDGA-HAPELTKKVQRHASS 119 (153)
T ss_dssp EE--TTE---EEEEEESS-CHHHHHHHHHHHSCT
T ss_pred EE--CCE---EEEEEeCC-CHHHHHHHHHHHhcc
Confidence 98 252 45677785 777888778777654
No 134
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=95.87 E-value=0.014 Score=49.02 Aligned_cols=88 Identities=6% Similarity=-0.047 Sum_probs=59.1
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCc----hH-------------------HHHHHHh
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRA----SE-------------------GFKMSNS 240 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~----~E-------------------g~~va~~ 240 (465)
.+|++||++.++.+..|..+...+ ..+.+-+. .++.+...+++. .+ ...+++.
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE 109 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence 688999999988776555544322 12222222 356677766643 11 2357788
Q ss_pred CCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 241 l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
|++..+|+++||++. | .++.+..|..+.+++.+.|
T Consensus 110 ~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l 144 (145)
T 3erw_A 110 YHIITIPTSFLLNEK-G---EIEKTKIGPMTAEQLKEWT 144 (145)
T ss_dssp TTCCEESEEEEECTT-C---CEEEEEESCCCHHHHHHHH
T ss_pred cCcCccCeEEEEcCC-C---cEEEEEcCCcCHHHHHHhh
Confidence 999999999999873 4 3566788999998887665
No 135
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=95.86 E-value=0.0081 Score=44.24 Aligned_cols=40 Identities=23% Similarity=0.477 Sum_probs=36.3
Q ss_pred chHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhC
Q 012346 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (465)
Q Consensus 3 ~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~ 43 (465)
++.+.|.+|...||..- +=|...|+.++||++.|+..|..
T Consensus 6 ~q~~mv~~~s~~Tgmn~-~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNL-EWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHHCCCH-HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 36789999999999776 78999999999999999999965
No 136
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=95.85 E-value=0.034 Score=45.28 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=58.7
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+..++|.||.. |+.+.-.+..++||.+|..-|......++....|+- ..+.+.+ +.||.++|+.++.+|+|-
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D---~~tL~~~gI~~g~~I~l~ 94 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF--AGKILKD---QDTLSQHGIHDGLTVHLV 94 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE--TTEEECT---TCCTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE--CCEECCC---cCcHHHcCCCCCCEEEEE
Confidence 35688999998 888889999999999999999877655667777764 4566642 679999999999988774
No 137
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=95.85 E-value=0.029 Score=46.85 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=59.2
Q ss_pred CeEEEEEECCC----------CceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCC
Q 012346 387 NVTQVLVRFPN----------GERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHP 456 (465)
Q Consensus 387 ~~~~i~iRlP~----------G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p 456 (465)
+.++|.|++|+ |+.+.-.+..++||.+|..-|......++....|+- ..+.+. .+.||.+.|+.+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~--~Gk~L~---D~~tL~~y~i~~ 98 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY--EGIFIK---DSNSLAYYNMAS 98 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE--TTEEEC---TTSBHHHHTCCS
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE--CCEECC---CCCCHHHCCCCC
Confidence 46899999996 677888999999999999999987766677777774 355663 268999999999
Q ss_pred CeeEEEE
Q 012346 457 QASLFVE 463 (465)
Q Consensus 457 ~~~L~ve 463 (465)
+.+|++-
T Consensus 99 g~~i~lv 105 (115)
T 1we7_A 99 GAVIHLA 105 (115)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 9988874
No 138
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=94.83 E-value=0.0015 Score=52.14 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=63.2
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCccee
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~ 261 (465)
+.+..|+++|+++++.+..|..+...+ +.+.+.+..++.+...+++. ...+++.|++..+|.+.++ . .|.
T Consensus 15 ~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~-~-~g~--- 84 (106)
T 2yj7_A 15 VLKSDKPVLVDFWAPWCGPCRMIAPII---EELAKEYEGKVKVVKVNVDE--NPNTAAQYGIRSIPTLLLF-K-NGQ--- 84 (106)
Confidence 346688999999999888888776433 33444444467777776653 3457788999999999988 3 352
Q ss_pred eEEeeecCCChHHHHHHHHHH
Q 012346 262 LLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 262 vl~~i~G~~~~~~~~~~L~~~ 282 (465)
++.+..|..+.+++.+.|...
T Consensus 85 ~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 85 VVDRLVGAQPKEALKERIDKH 105 (106)
Confidence 355667888877777766543
No 139
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=95.80 E-value=0.038 Score=45.74 Aligned_cols=72 Identities=8% Similarity=0.128 Sum_probs=59.7
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...+|.||.++|+.+.-.+..++||.+|..-|......++....|+-. .+.+.+ +.||.++|+.++++|+|-
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~D---~~tL~~~gI~~gs~I~l~ 105 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLED---GRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET--TEECCS---SCBTTTTTCCTTCEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC--CEECCC---CCcHHHcCCCCCCEEEEE
Confidence 468899999999998899999999999999998876666677887653 556632 689999999999998875
No 140
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=95.80 E-value=0.018 Score=49.84 Aligned_cols=99 Identities=11% Similarity=0.077 Sum_probs=63.0
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCc-hHH-HHHH-----------------HhC
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRA-SEG-FKMS-----------------NSL 241 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~-~Eg-~~va-----------------~~l 241 (465)
+.-.+|++||++.++.+..|..+...+ ..+.+-+. .++.+.+.++++ .+. .++. ..|
T Consensus 30 ~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (165)
T 3or5_A 30 ASLKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAF 106 (165)
T ss_dssp GGGTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHH
T ss_pred hHcCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHH
Confidence 334679999999988776665554322 12222222 247777776664 222 2222 222
Q ss_pred ------CCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhhc
Q 012346 242 ------KASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (465)
Q Consensus 242 ------~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~ 287 (465)
++..+|.++||++. | .++.+..|..+.+++...|...+.+..
T Consensus 107 ~~~~~~~i~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~~l~~~~ 154 (165)
T 3or5_A 107 NGYIDGGITGIPTSFVIDAS-G---NVSGVIVGPRSKADFDRIVKMALGAKA 154 (165)
T ss_dssp HTTSTTCSCSSSEEEEECTT-S---BEEEEECSCCCHHHHHHHHHHHHC---
T ss_pred hhhhccCCCCCCeEEEECCC-C---cEEEEEcCCCCHHHHHHHHHHHHhhhc
Confidence 78899999999973 5 356778899999999999988886653
No 141
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.77 E-value=0.011 Score=44.08 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=36.5
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~~ 47 (465)
..++|.+++++ |++. +.|+..|..++||++.|+.-.|.+..+
T Consensus 9 ~~~~I~~L~~M-GF~~-~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEM-GFSK-EASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTT-TCCH-HHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 46789999985 8877 899999999999999999999986653
No 142
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.74 E-value=0.0095 Score=45.80 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=37.4
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~~ 47 (465)
.+++|.+++++ |++. +.|+..|..++||++.|+.-.|.+..+
T Consensus 29 ~ee~I~~L~eM-GF~r-~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 29 SEEQIQKLVAM-GFDR-TQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CHHHHHHHHTT-TCCH-HHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred cHHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 57899999997 8877 899999999999999999999987654
No 143
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=95.72 E-value=0.026 Score=47.79 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=65.6
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCCCCCcEEEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii 252 (465)
+|.+++. ...+|+++|++..+.+..|..+. +.+.++.++ ++++...|++.. ..++..|++..+|+++++
T Consensus 30 ~~~~~l~--~~~~k~vvv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~ 99 (133)
T 3cxg_A 30 SLNQVFS--STQNSSIVIKFGAVWCKPCNKIK------EYFKNQLNYYYVTLVDIDVDIH--PKLNDQHNIKALPTFEFY 99 (133)
T ss_dssp HHHHHHT--C-CCSEEEEEEECTTCHHHHHTH------HHHHGGGGTEECEEEEEETTTC--HHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHH--hcCCCEEEEEEECCCCHHHHHHH------HHHHHHHHhcCEEEEEEeccch--HHHHHhcCCCCCCEEEEE
Confidence 4555543 22478999999999886666643 333343333 467777776643 456788999999999998
Q ss_pred ecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 253 ~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
....| ...++.++.|. ++++|...|...+.
T Consensus 100 ~~~~g-~g~~~~~~~G~-~~~~l~~~l~~~l~ 129 (133)
T 3cxg_A 100 FNLNN-EWVLVHTVEGA-NQNDIEKAFQKYCL 129 (133)
T ss_dssp EEETT-EEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred EecCC-CeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence 31123 23467778888 78888877776553
No 144
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=95.72 E-value=0.036 Score=45.95 Aligned_cols=71 Identities=10% Similarity=0.192 Sum_probs=59.5
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...|.||..+|+.+.-++..++||.+|...|......++....|+ |-.+.+.+ +.||.++|+.++.+|++-
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~~gI~~gs~I~l~ 105 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQKESTLHLV 105 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTTTTTCCTTCEEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE--ECCEECCC---CCcHHHCCCCCCCEEEEE
Confidence 578999999999999999999999999999988766667777877 44566643 679999999999988874
No 145
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.70 E-value=0.029 Score=44.10 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=59.0
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcc-cCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVV-YSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~-~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
-.+|.++..+|+.+.-.+..++||.+|..-|......++....|+- ..+. +. .+.||.+.|+.++++|.|-
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~lL~---D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV--DGIVILR---EDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCC---SSSBHHHHTCCTTSCEEEE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE--CCEEecC---CcCCHHHcCCCCCCEEEEE
Confidence 4679999999999999999999999999999887666677778874 4565 53 2689999999999988774
No 146
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=95.67 E-value=0.02 Score=49.99 Aligned_cols=91 Identities=11% Similarity=0.028 Sum_probs=63.3
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCch---------------------HHHHHHHhCCC
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS---------------------EGFKMSNSLKA 243 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~---------------------Eg~~va~~l~~ 243 (465)
.+|+++|++..+.+..|..+. +.+.++.++++.+++.++++. +...++..|++
T Consensus 50 ~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 123 (168)
T 2b1k_A 50 QGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 123 (168)
T ss_dssp CSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTC
T ss_pred CCCEEEEEEECCCCHHHHHHH------HHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCc
Confidence 578899999987654444432 455666666777777664321 12346777899
Q ss_pred CCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 244 SRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 244 ~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
..+|..++|++. | .++.+..|..+++++...|...+++
T Consensus 124 ~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~~l~~ 161 (168)
T 2b1k_A 124 YGAPETFLIDGN-G---IIRYRHAGDLNPRVWEEEIKPLWEK 161 (168)
T ss_dssp CSSSEEEEECTT-S---BEEEEEESCCCHHHHHHTTHHHHHH
T ss_pred cccCEEEEECCC-C---eEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999873 5 3566778999999888888777654
No 147
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=95.67 E-value=0.031 Score=42.92 Aligned_cols=71 Identities=10% Similarity=0.025 Sum_probs=58.5
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...|.||..+|+.+.-....++||.+|..-+......++....|+- .-+.+.+ +.||.+.|+..+.+|.+-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~--~G~~L~d---~~tl~~~~i~~~~~i~l~ 73 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF--EGQRIAD---NHTPKELGMEEEDVIEVY 73 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TCCHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE--CCEEeCC---CCCHHHcCCCCCCEEEEE
Confidence 4689999999999999999999999999999887666667777754 4566653 579999999999998774
No 148
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=95.67 E-value=0.054 Score=44.53 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=33.7
Q ss_pred HHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
.+++.|++..+|.++||++. | .++.+..|..+.+++...|..
T Consensus 95 ~~~~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 95 KLLETYGVRSYPTQAFIDKE-G---KLVKTHPGFMEKDAILQTLKE 136 (138)
T ss_dssp HHHHHTTCCSSSEEEEECTT-C---CEEEEEESCCCHHHHHHHHHH
T ss_pred HHHHHcCcccCCeEEEECCC-C---cEEEeecCCCcHHHHHHHHHh
Confidence 57788999999999999873 5 356677899998888877754
No 149
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=95.67 E-value=0.033 Score=44.09 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=56.7
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.|.||..+|+.+.-.+..++||.+|..-|......++....|+-. .+.+. .+.||.+.|+.++.+|.+-
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~---D~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS--GKQMN---DEKTAADYKILGGSVLHLV 70 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET--TEECC---TTSBTTTTTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC--CeECC---CCCcHHHcCCCCCCEEEEE
Confidence 578999999999999999999999999998766556677777643 45553 2679999999999998874
No 150
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=95.66 E-value=0.067 Score=44.01 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=64.5
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..+|.+.+.. ...|+.+|+++++.+..|..+... +.++.++ ++.+...|+++ +...+++.|++..+|++
T Consensus 25 ~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~------l~~~~~~~~~~~~~~vd~~~-~~~~~~~~~~v~~~Pt~ 95 (124)
T 1faa_A 25 KDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPTF 95 (124)
T ss_dssp TTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSSSSEE
T ss_pred chhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHH------HHHHHHHCCCCEEEEEecCc-chHHHHHHcCCCeeeEE
Confidence 4566666653 367899999999988777776543 3333332 57788887753 33457888999999996
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
.++. .| .++.++.|.. ++++.+.|...
T Consensus 96 ~~~~--~G---~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 96 KILK--EN---SVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEE--TT---EEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEe--CC---cEEEEEcCCC-HHHHHHHHHHh
Confidence 6553 25 3566777875 77776666543
No 151
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.031 Score=45.98 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=57.4
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.+|.||..+|+.+.-.+..++||.+|...|......+.....|+- -.+.+.+ +.||.++|+.++.+|++-
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D---~~tL~~~~i~~g~~i~lv 71 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY--SGKVLQD---SKTVSECGLKDGDQVVFM 71 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE--TTEECCT---TSBTTTTTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE--CCEECCC---cCCHHHcCCCCCCEEEEE
Confidence 468899999999998999999999999999987766667777764 3566642 679999999999988874
No 152
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=95.63 E-value=0.017 Score=41.36 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=35.1
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
.+++|.+++++ |+.+.+.|+..|..++||++.|+...|.+
T Consensus 12 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 12 FQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 46899999997 88666899999999999999999988764
No 153
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.63 E-value=0.071 Score=45.24 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=58.3
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...+|.||.. |+.+.-.+..++||.+|..-|......+.....|+- -.+.+.+ +.||.++|+.++.+|+|-
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D---~~tL~dygI~~gstI~lv 101 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF--AGKILKD---QDTLIQHGIHDGLTVHLV 101 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE--TTEEEST---TSCGGGTTCSSSEEEEEE
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE--CCEEcCC---CCCHHHcCCCCCCEEEEE
Confidence 4688999988 888999999999999999999887666667777764 3566642 689999999999988874
No 154
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=95.63 E-value=0.039 Score=44.55 Aligned_cols=78 Identities=13% Similarity=-0.011 Sum_probs=61.4
Q ss_pred CCeEEEEEECCCCc--eEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCccc-CCCCccCcccccCCCCCeeEEE
Q 012346 386 PNVTQVLVRFPNGE--RKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVY-STDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 386 ~~~~~i~iRlP~G~--r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~-~~~~~~~TL~e~gL~p~~~L~v 462 (465)
++.++|.|+.++++ .+.+++..++||.+|-.-|+.....++..-+|+-..+.+.+ .-.+.+.||.+.|+.++.+|.|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 46789999998885 79999999999999999999877767777777665433322 1113378999999999999987
Q ss_pred E
Q 012346 463 E 463 (465)
Q Consensus 463 e 463 (465)
.
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 5
No 155
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=95.62 E-value=0.067 Score=42.99 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=60.7
Q ss_pred CCCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 385 GPNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 385 ~~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
.+..+.|-|+.+.|+.+.-...++|||.+|..-|......++..-.|+- --+.+.+ ..||+|.|+..+.+|.+
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif--~Gk~LkD---~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK--GGSVLKD---HISLEDYEVHDQTNLEL 90 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBTGGGTCCTTCEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe--CCEEccC---cCCHHHcCCCCCCEEEE
Confidence 3568999999999999999999999999999999877666777888865 3456643 67999999999999876
No 156
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=95.59 E-value=0.016 Score=47.08 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=67.7
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh---ccceEeecccCchHHHHHHHhCCCCCCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYP 247 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~---~~fv~w~~~v~~~Eg~~va~~l~~~~~P 247 (465)
-..+|++++. ..|+++|+++++.+..|..+...+ ..+.+-+. .++.+...|.+... .++..|++..+|
T Consensus 13 ~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~P 83 (120)
T 1mek_A 13 RKSNFAEALA----AHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATEES--DLAQQYGVRGYP 83 (120)
T ss_dssp CTTTHHHHHH----HCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTTCC--SSHHHHTCCSSS
T ss_pred chhhHHHHHc----cCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCCCH--HHHHHCCCCccc
Confidence 4556776653 579999999999998888776433 12333332 24667777665432 467789999999
Q ss_pred cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 248 ~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
++.++. .|..+ ...+..|..+.+++.+.|...+
T Consensus 84 t~~~~~--~g~~~-~~~~~~g~~~~~~l~~~l~~~~ 116 (120)
T 1mek_A 84 TIKFFR--NGDTA-SPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp EEEEEE--SSCSS-SCEECCCCSSHHHHHHHHHTTS
T ss_pred EEEEEe--CCCcC-CcccccCccCHHHHHHHHHhcc
Confidence 999984 25321 1156678888888888776544
No 157
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.56 E-value=0.031 Score=46.07 Aligned_cols=73 Identities=16% Similarity=0.068 Sum_probs=59.3
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCC---------------cCeEEEeCCCCcccCCCCccCcccc
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEV---------------QNYSLVSNFPRVVYSTDKFSLSLKE 451 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~---------------~~f~L~t~fPr~~~~~~~~~~TL~e 451 (465)
...+|.|+.-+|+.+.-....++||.+|-.-|......++ ..|.|+ |..+.+.+ .+.||.+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li--~~Gk~L~d--D~~tL~d 81 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT--SAGEKLTE--DRKKLRD 81 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE--SSSCEECC--SSSBHHH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE--eCCcCccC--CcCCHHH
Confidence 4588999999999999999999999999999976532211 368887 77888863 2689999
Q ss_pred cCCCCCeeEEEE
Q 012346 452 AGLHPQASLFVE 463 (465)
Q Consensus 452 ~gL~p~~~L~ve 463 (465)
.||.++.+|++-
T Consensus 82 ygI~~g~~l~lv 93 (105)
T 1v2y_A 82 YGIRNRDEVSFI 93 (105)
T ss_dssp HTCCSSEEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 999999998764
No 158
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=95.56 E-value=0.015 Score=41.85 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=35.5
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~ 45 (465)
.+++|.+++++ |+.+.+.|+..|..++||++.|+...|.+.
T Consensus 11 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 11 FQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 45789999997 886658999999999999999999988753
No 159
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.52 E-value=0.015 Score=42.71 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=35.1
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
.+++|++++++ |+.|.+.++..|..++||++.||...|.+
T Consensus 17 ~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 17 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp THHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35789999998 88876788999999999999999998864
No 160
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=95.52 E-value=0.049 Score=43.93 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=60.3
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+....|.||..+|+.+.-....++||.+|..-+......++....|+-. -+.+.+ +.||.++|+..+.+|.+-
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~--Gk~L~d---~~tl~dy~i~~g~~I~l~ 91 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE--GQRIAD---NHTPKELGMEEEDVIEVY 91 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET--TEECCT---TCCHHHHTCCTTCEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC--CeEcCC---CCCHHHCCCCCCCEEEEE
Confidence 4578999999999999999999999999999998776666677777653 566643 679999999999988774
No 161
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.51 E-value=0.08 Score=42.01 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=58.5
Q ss_pred CCeEEEEEECCCCceEEEEecCC-----CcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeE
Q 012346 386 PNVTQVLVRFPNGERKERRFHST-----AVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASL 460 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~-----~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L 460 (465)
...++|.|+.. |+.+...+..+ +||.+|..-|......++..-.|+ |-.+.+.+ .++||.++|+.++..|
T Consensus 5 ~~~~~v~Vk~~-~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~--~~Gk~L~D--~~~~L~~~~i~~g~~i 79 (92)
T 1wxv_A 5 SSGLTVTVTHS-NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI--FKGKSLKE--METPLSALGIQDGCRV 79 (92)
T ss_dssp CSSEEEEEECS-SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE--ETTEEECC--SSSBHHHHTCCSSEEE
T ss_pred CCeEEEEEEEC-CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE--ECCeecCC--CcccHHHCCCCCCCEE
Confidence 35688999984 77888899995 999999999998766667778886 44666653 3679999999999998
Q ss_pred EEE
Q 012346 461 FVE 463 (465)
Q Consensus 461 ~ve 463 (465)
+|-
T Consensus 80 ~l~ 82 (92)
T 1wxv_A 80 MLI 82 (92)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 162
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=95.51 E-value=0.057 Score=43.99 Aligned_cols=74 Identities=8% Similarity=-0.034 Sum_probs=58.6
Q ss_pred CCeEEEEEECCCC----ceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEE
Q 012346 386 PNVTQVLVRFPNG----ERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLF 461 (465)
Q Consensus 386 ~~~~~i~iRlP~G----~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ 461 (465)
....+|.|+.++| +.+.-.+..++||.+|..-|......+.....|+-. -+.+.+ ..+||.+.|+.++.+|+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~--gk~L~D--~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM--EQLLTD--DHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET--TEEECC--SSSBHHHHTCCTTEEEE
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC--CEECCC--CcccHHHCCCCCCCEEE
Confidence 3457899999866 577788999999999999999887666677777644 456643 25799999999999998
Q ss_pred EE
Q 012346 462 VE 463 (465)
Q Consensus 462 ve 463 (465)
|.
T Consensus 81 l~ 82 (102)
T 1v5o_A 81 LL 82 (102)
T ss_dssp EC
T ss_pred EE
Confidence 75
No 163
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.47 E-value=0.01 Score=41.92 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=35.2
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
.+++|.+++++ |++. +.|+..|..++||++.|+.-.|.+
T Consensus 8 ~~~~i~~L~~M-GF~~-~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSM-GYER-ERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHT-TCCH-HHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHHhC
Confidence 56899999998 8876 899999999999999999998875
No 164
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=95.41 E-value=0.13 Score=44.25 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=38.3
Q ss_pred HHHHHHhCCCCCCC---------------cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 234 GFKMSNSLKASRYP---------------FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 234 g~~va~~l~~~~~P---------------~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
...+++.|++...| .++||++. | .++.+..|..+++++...|...+.++
T Consensus 100 ~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~ll~~~ 163 (164)
T 2ggt_A 100 VDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPD-G---EFLDYFGQNKRKGEIAASIATHMRPY 163 (164)
T ss_dssp HHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTT-S---CEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred HHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCC-C---eEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34578889998889 78888873 5 35566778889999999998887654
No 165
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=95.38 E-value=0.043 Score=46.21 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=60.2
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHh-hc-cceEeecccCchH-----------------------HHHHHH
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-NE-NFVSWGGSIRASE-----------------------GFKMSN 239 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l-~~-~fv~w~~~v~~~E-----------------------g~~va~ 239 (465)
.+|++||++.++.+..|......+ ..+.+-+ .+ ++.+.+.+++... ...++.
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK 108 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred CCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence 578999999988777777765432 1233333 22 4777777776543 346788
Q ss_pred hCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 240 SLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 240 ~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.|++..+|+++||++. |. ++.+. .+.+++...|...+.
T Consensus 109 ~~~v~~~P~~~lid~~-G~---i~~~~---~~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 109 QYAILTLPTNILLSPT-GK---ILARD---IQGEALTGKLKELLK 146 (148)
T ss_dssp HTTCCSSSEEEEECTT-SB---EEEES---CCHHHHHHHHHHHC-
T ss_pred hcCCCCcCEEEEECCC-Ce---EEEec---CCHHHHHHHHHHHHc
Confidence 9999999999999873 42 34432 277777777776653
No 166
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.38 E-value=0.018 Score=48.11 Aligned_cols=93 Identities=11% Similarity=0.086 Sum_probs=64.7
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceee
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~v 262 (465)
..|++||+++.+.+..|..+...+ ..+.+.+. .++.+..+|++... .++..|++..+|+++++.. |..+..
T Consensus 24 ~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~--g~~~~~ 96 (133)
T 2dj3_A 24 PKKDVLIEFYAPWCGHCKQLEPIY---TSLGKKYKGQKDLVIAKMDATAND--ITNDQYKVEGFPTIYFAPS--GDKKNP 96 (133)
T ss_dssp TTSEEEEEECCTTCSHHHHHHHHH---HHHHHHHTTSSSEEEEEECTTTSC--CCCSSCCCSSSSEEEEECT--TCTTSC
T ss_pred CCCcEEEEEECCCChhHHHHHHHH---HHHHHHhcCCCCEEEEEecCCcCH--HHHhhcCCCcCCEEEEEeC--CCcccc
Confidence 579999999999998888887543 34444444 36888888876433 3456799999999999875 322222
Q ss_pred EEeee-cCCChHHHHHHHHHHHHh
Q 012346 263 LQQVE-GPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 263 l~~i~-G~~~~~~~~~~L~~~~~~ 285 (465)
+ +.. |..+.++|.+.|...+..
T Consensus 97 ~-~~~gg~~~~~~l~~~l~~~~~~ 119 (133)
T 2dj3_A 97 I-KFEGGNRDLEHLSKFIDEHATK 119 (133)
T ss_dssp E-ECCSSCCSTTHHHHHHHHHSSS
T ss_pred e-EecCCCcCHHHHHHHHHHhccc
Confidence 2 234 567888888888776643
No 167
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=95.38 E-value=0.049 Score=43.94 Aligned_cols=96 Identities=13% Similarity=0.164 Sum_probs=63.3
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..+|.+++.. ...|+.+|+++++.+..|..+... +.++.+. ++.+...|+++ +...++..|++..+|++
T Consensus 12 ~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~------l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~ 82 (111)
T 2pu9_C 12 KDTFWPIVKA--AGDKPVVLDMFTQWCGPSKAMAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPTF 82 (111)
T ss_dssp TTTHHHHHTT--CTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSBSSEE
T ss_pred hHHHHHHHHh--cCCCEEEEEEECCcCHhHHHHCHH------HHHHHHHCCCeEEEEEecCc-chHHHHHHcCCCeeeEE
Confidence 4566666643 247899999999888777666532 3333332 57788888763 23467788999999995
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
.+. . .|. ++.++.|. +++++.+.|..+
T Consensus 83 ~~~-~-~G~---~~~~~~G~-~~~~l~~~l~~~ 109 (111)
T 2pu9_C 83 KIL-K-ENS---VVGEVTGA-KYDKLLEAIQAA 109 (111)
T ss_dssp EEE-S-SSS---EEEEEESS-CHHHHHHHHHHH
T ss_pred EEE-e-CCc---EEEEEcCC-CHHHHHHHHHHh
Confidence 544 3 353 45677787 477777666554
No 168
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=95.36 E-value=0.054 Score=46.83 Aligned_cols=72 Identities=10% Similarity=0.176 Sum_probs=59.3
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+...|.|+..+|+.+...+..++|+.+|..-|......++....|+ |..+.+.+ +.||.+.|+.++++|++-
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~--~~g~~L~d---~~tL~~~~i~~~~~i~l~ 146 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQKESTLHLV 146 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBTGGGTCCTTCEEEEE
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE--ECCEECCC---CCCHHHcCCCCCCEEEEE
Confidence 3467888888999999999999999999999988765667788887 45666642 679999999999988874
No 169
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=95.35 E-value=0.056 Score=46.85 Aligned_cols=88 Identities=10% Similarity=0.161 Sum_probs=65.0
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh---ccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcce
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~---~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~ 260 (465)
...|++||++..+.+..|..+.. .+.++-+ ..+.++..|++.. -.++..|++..+|++.++.. |.
T Consensus 21 ~~~k~vlv~F~a~WC~~C~~~~p------~l~~l~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~~~--G~-- 88 (149)
T 3gix_A 21 TAEKVLVLRFGRDEDPVCLQLDD------ILSKTSSDLSKMAAIYLVDVDQT--AVYTQYFDISYIPSTVFFFN--GQ-- 88 (149)
T ss_dssp CCSSEEEEEEECTTSHHHHHHHH------HHHHHHTTTTTTEEEEEEETTTC--CHHHHHTTCCSSSEEEEEET--TE--
T ss_pred cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHccCceEEEEEECCcC--HHHHHHcCCCccCeEEEEEC--Ce--
Confidence 56899999999998877777653 3333333 3588888888643 34788999999999995542 42
Q ss_pred eeE---------Eeeec-CCChHHHHHHHHHHHH
Q 012346 261 ALL---------QQVEG-PKSPEEMLMILQKVIE 284 (465)
Q Consensus 261 ~vl---------~~i~G-~~~~~~~~~~L~~~~~ 284 (465)
++ .++.| ..+.++|...|..++.
T Consensus 89 -~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~ 121 (149)
T 3gix_A 89 -HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR 121 (149)
T ss_dssp -EEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred -EEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence 45 67889 8899999888887764
No 170
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.31 E-value=0.045 Score=50.63 Aligned_cols=103 Identities=9% Similarity=-0.004 Sum_probs=74.4
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
-..+|.+.+ .+..|+.+|++..+.+..|..+...+ +.+.+.+..++.+...+++... .++..|++..+|+++
T Consensus 18 t~~~f~~~v---~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~--~l~~~~~v~~~Pt~~ 89 (222)
T 3dxb_A 18 TDDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLL 89 (222)
T ss_dssp CTTTHHHHH---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCT--TTGGGGTCCSBSEEE
T ss_pred CHHHHHHHH---HhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCCCH--HHHHHcCCCcCCEEE
Confidence 445666654 45689999999999887777765433 3444445556777777776432 457889999999998
Q ss_pred EEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
++.. | .++.++.|..+.+++...|...+...
T Consensus 90 ~~~~--G---~~~~~~~G~~~~~~l~~~l~~~l~~~ 120 (222)
T 3dxb_A 90 LFKN--G---EVAATKVGALSKGQLKEFLDANLAGS 120 (222)
T ss_dssp EEET--T---EEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred EEEC--C---eEEEEeccccChHHHHHHHHhhcccc
Confidence 8852 5 34667889999999999998877543
No 171
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.28 E-value=0.017 Score=39.46 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=34.3
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
..++|.+.+++ |++. +.|+..|..++||++.|+.-.|.+
T Consensus 4 ~e~~i~~L~~M-GF~~-~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGM-GFTE-EEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTT-TSCH-HHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCcCHHHHHHHHHcC
Confidence 45889999996 8887 899999999999999999987764
No 172
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=95.27 E-value=0.068 Score=49.99 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=76.8
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYP 247 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P 247 (465)
-..+|.+.+ .+..|+.+|++..+.+..|..+.-.+ ..+.+-+.. ++.+...|++..+...+++.|++..+|
T Consensus 18 ~~~~f~~~i---~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~P 91 (244)
T 3q6o_A 18 QADTVRGAV---LGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFP 91 (244)
T ss_dssp CTTTHHHHH---SSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSS
T ss_pred ChhhHHHHH---hhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccC
Confidence 344565554 34569999999999988887776322 344444444 678888888777778899999999999
Q ss_pred cEEEEecCC--CcceeeEEeeecCCChHHHHHHHHHHHHhhc
Q 012346 248 FCAVVMPAA--NQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (465)
Q Consensus 248 ~i~ii~~~~--~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~ 287 (465)
++.++.... |. ...+ +..| .+++.+...|...+..+.
T Consensus 92 t~~~~~~g~~~~~-g~~~-~~~g-~~~~~l~~~i~~~l~~~~ 130 (244)
T 3q6o_A 92 TVRFFXAFTXNGS-GAVF-PVAG-ADVQTLRERLIDALESHH 130 (244)
T ss_dssp EEEEECTTCCSSS-CEEC-CCTT-CCHHHHHHHHHHHHHTCT
T ss_pred EEEEEeCCCcCCC-CeeE-ecCC-CCHHHHHHHHHHHHHhcc
Confidence 999998521 11 1223 5666 589999999988887654
No 173
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.056 Score=45.08 Aligned_cols=72 Identities=8% Similarity=0.096 Sum_probs=60.0
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+...|.++..+|+.+.-.+..++||.+|..-|......++....|+-. .+.+. .+.||.+.|+.++++|.|-
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~---D~~tL~~ygI~~gstI~l~ 79 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA--GKQLE---DGRTLSDYNIQRESTLHLV 79 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEECC---TTCBTTTTTCCSSCEEEEE
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC--CEECC---CCCcHHHCCCCCCCEEEEE
Confidence 456899999999999999999999999999998876666777888643 56664 2689999999999998774
No 174
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=95.22 E-value=0.09 Score=42.68 Aligned_cols=72 Identities=8% Similarity=0.113 Sum_probs=56.9
Q ss_pred CCeEEEEEECCCCceEEE--EecCCCcHHHHHHHH-HhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCC-CCCeeEE
Q 012346 386 PNVTQVLVRFPNGERKER--RFHSTAVVQLLYDYV-DSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGL-HPQASLF 461 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~r--rF~~~~tl~~l~~fv-~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL-~p~~~L~ 461 (465)
+....|-||..+|+.+.- .+..++|+.+|-.-| ......++...+|+- -.+.+.+ +.||.++|+ .++.+|+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~--~Gk~L~D---~~tL~dy~I~~~g~ti~ 91 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL--KGKVLHD---NLFLSDLKVTPANSTIT 91 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE--TTEEECT---TCBGGGSCCBTTBCEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE--CCEECcC---cCCHHHcCcCCCCCEEE
Confidence 356899999999986555 567999999999999 766555677788874 4567753 679999999 8888887
Q ss_pred E
Q 012346 462 V 462 (465)
Q Consensus 462 v 462 (465)
+
T Consensus 92 l 92 (98)
T 4a20_A 92 V 92 (98)
T ss_dssp E
T ss_pred E
Confidence 6
No 175
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=95.20 E-value=0.056 Score=48.21 Aligned_cols=73 Identities=8% Similarity=0.130 Sum_probs=59.9
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+....|.||..+|+.+.-+...++||.+|..-|......++....|+- -.+.+.+ +.||.+.||.++.+|++-
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~--~g~~L~d---~~tL~~~~i~~~~~l~l~ 90 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLED---GRTLSDYNIQKESTLHLV 90 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCT---TCBTGGGTCCTTCEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE--CCccccc---cCCHhHcCCcccceeeee
Confidence 456889999999999999999999999999999887666667777774 3556642 679999999999888774
No 176
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=95.19 E-value=0.12 Score=43.60 Aligned_cols=88 Identities=9% Similarity=-0.069 Sum_probs=63.5
Q ss_pred EEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCc-------hHHHHHHHhCCCCCCCcEEEEecCCCcc
Q 012346 188 LLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRA-------SEGFKMSNSLKASRYPFCAVVMPAANQR 259 (465)
Q Consensus 188 ~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~-------~Eg~~va~~l~~~~~P~i~ii~~~~~~~ 259 (465)
+++|++..+.+..|..+. +.+.++.++ ++.+...++++ .+...++..|++..+|+++++.. |
T Consensus 33 ~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~~--G-- 102 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKE--G-- 102 (135)
T ss_dssp SEEEEEEETTCHHHHHHH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEET--T--
T ss_pred cEEEEEECCcCHhhhHhC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEcC--C--
Confidence 789999998887776664 445555554 36777777744 45667888999999998888773 5
Q ss_pred eeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 260 IALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 260 ~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.++.++.|..+.+.+...++..++..
T Consensus 103 -~~v~~~~G~~~~~~~~~~i~~~~~~~ 128 (135)
T 3emx_A 103 -RIVDKLVGATPWSLKVEKAREIYGGE 128 (135)
T ss_dssp -EEEEEEESCCCHHHHHHHHHHHC---
T ss_pred -EEEEEEeCCCCHHHHHHHHHHHhCCC
Confidence 35778899999888877777766543
No 177
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=95.11 E-value=0.064 Score=45.75 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 233 EGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 233 Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
+...++..|++..+|.++||++. | .++.+..|..+.+++...|......
T Consensus 97 ~~~~~~~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~~~~~ 145 (154)
T 3ia1_A 97 RPHEVAARFKVLGQPWTFVVDRE-G---KVVALFAGRAGREALLDALLLAGAD 145 (154)
T ss_dssp CHHHHHTTSSBCSSCEEEEECTT-S---EEEEEEESBCCHHHHHHHHHHTTCC
T ss_pred chHHHHHHhCCCcccEEEEECCC-C---CEEEEEcCCCCHHHHHHHHHhccCc
Confidence 45667889999999999999973 5 3667788999999988888776544
No 178
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=95.10 E-value=0.039 Score=45.16 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=64.8
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-----cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCc
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-----NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-----~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~ 258 (465)
...|+.+|+++.+.+..|..+...+ ..+.+.+.. ++.+...|++..+ +++ ++..+|++.++.. |.
T Consensus 23 ~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~--~v~~~Pt~~~~~~--~~ 92 (121)
T 2djj_A 23 DDTKDVLIEFYAPWCGHCKALAPKY---EELGALYAKSEFKDRVVIAKVDATAND---VPD--EIQGFPTIKLYPA--GA 92 (121)
T ss_dssp CTTSCEEEEEECSSCTTHHHHHHHH---HHHHHHHTTSSCTTSSEEEEEETTTSC---CSS--CCSSSSEEEEECS--SC
T ss_pred cCCCCEEEEEECCCCHhHHHhhHHH---HHHHHHHhhcccCCceEEEEEECcccc---ccc--ccCcCCeEEEEeC--cC
Confidence 4679999999999999999887543 355555554 7888888877654 444 8999999999975 32
Q ss_pred ceeeEEeeecCCChHHHHHHHHHHH
Q 012346 259 RIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 259 ~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.. .+.+..|..+.+++.+.|...+
T Consensus 93 ~~-~~~~~~G~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 93 KG-QPVTYSGSRTVEDLIKFIAENG 116 (121)
T ss_dssp TT-SCCCCCCCSCHHHHHHHHHHTS
T ss_pred CC-CceEecCCCCHHHHHHHHHhcc
Confidence 21 1345678888888887776543
No 179
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=95.04 E-value=0.11 Score=45.82 Aligned_cols=96 Identities=8% Similarity=0.046 Sum_probs=60.8
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cc------eEeecccCc--hHHH-HHHHh-----------
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NF------VSWGGSIRA--SEGF-KMSNS----------- 240 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~f------v~w~~~v~~--~Eg~-~va~~----------- 240 (465)
+.-.+|++||++..+.+..|......+ ..+.+-+.+ ++ .+++.++++ .+.+ ++.+.
T Consensus 55 ~~~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~ 131 (183)
T 3lwa_A 55 SDFENQVVILNAWGQWCAPCRSESDDL---QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDP 131 (183)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECT
T ss_pred HHhCCCEEEEEEECCcCHhHHHHHHHH---HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECC
Confidence 334579999999987665554443221 122222222 36 788877766 3332 33222
Q ss_pred ----------CCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 241 ----------LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 241 ----------l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
|++..+|.++||++. | .++.+..|..+.+++...|...+.
T Consensus 132 ~~~~~~~~~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 132 PFMTAASLGGVPASVIPTTIVLDKQ-H---RPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp TCGGGGGTTTCCTTCCSEEEEECTT-S---CEEEEECSCCCHHHHHHHHHHHHH
T ss_pred cchHHHHhccCCCCCCCeEEEECCC-C---cEEEEEcCCCCHHHHHHHHHHHHh
Confidence 256889999999973 5 356677788999999988887764
No 180
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=95.02 E-value=0.05 Score=48.28 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=57.1
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCch---HHHHHHHhCCCC----------------
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRAS---EGFKMSNSLKAS---------------- 244 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~---Eg~~va~~l~~~---------------- 244 (465)
.+|++||++..+.+..|......+ ..+.+-+. .++.+.+.+++.. +...+...++..
T Consensus 59 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 135 (186)
T 1jfu_A 59 RGKTLLVNLWATWCVPCRKEMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDL 135 (186)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHH
T ss_pred CCCEEEEEEEeCCCHhHHHHHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHh
Confidence 578999999977654443333221 12233333 3666666666543 234455555553
Q ss_pred -------CCCcEEEEecCCCcceeeEEeeecCCC--hHHHHHHHHHHHHh
Q 012346 245 -------RYPFCAVVMPAANQRIALLQQVEGPKS--PEEMLMILQKVIEE 285 (465)
Q Consensus 245 -------~~P~i~ii~~~~~~~~~vl~~i~G~~~--~~~~~~~L~~~~~~ 285 (465)
.+|.++||++. | .++.+..|..+ .+++...|...+.+
T Consensus 136 ~~~~~~~~~P~~~lid~~-G---~i~~~~~g~~~~~~~~l~~~l~~ll~~ 181 (186)
T 1jfu_A 136 KAIGRALGMPTSVLVDPQ-G---CEIATIAGPAEWASEDALKLIRAATGK 181 (186)
T ss_dssp HTTTCCSSSSEEEEECTT-S---BEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred ccccccCCCCEEEEECCC-C---CEEEEEecCCccCHHHHHHHHHHHhcc
Confidence 79999999873 5 35666778764 67888888777654
No 181
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=95.01 E-value=0.18 Score=43.04 Aligned_cols=91 Identities=12% Similarity=0.064 Sum_probs=58.3
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCchH-----------------------HHHHHHh
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASE-----------------------GFKMSNS 240 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~E-----------------------g~~va~~ 240 (465)
.+|+++|++..+.+..|......+ ..+.+-+. .++.+.+.++++.. ...+++.
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES 104 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence 578999999988777666554322 12222222 34777777766422 3567889
Q ss_pred CCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 241 l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
|++..+|.++||++. | .++.+. .+.+++...|...+..
T Consensus 105 ~~v~~~P~~~lid~~-G---~i~~~~---~~~~~l~~~l~~l~~~ 142 (152)
T 2lrn_A 105 YCIVGFPHIILVDPE-G---KIVAKE---LRGDDLYNTVEKFVNG 142 (152)
T ss_dssp TTCCSSCEEEEECTT-S---EEEEEC---CCTTHHHHHHHHHHTS
T ss_pred hCCCcCCeEEEECCC-C---eEEEee---CCHHHHHHHHHHHHhh
Confidence 999999999999873 5 234332 3556776666665543
No 182
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.00 E-value=0.07 Score=41.92 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=53.4
Q ss_pred EEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 392 LVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 392 ~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
-++..+|+.+.-.+..++||.+|..-|......++....|+ |-.+.+. .+.||.++|+.++++|+|-
T Consensus 15 ~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~---D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 15 LTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI--FKGKVLV---ETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp EEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE--ETTEECC---TTCBTTTTTCCTTEEEEEE
T ss_pred EEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE--ECCeECC---CcCCHHHCCCCCCCEEEEE
Confidence 34445888888999999999999999987765667778887 4566663 2689999999999988774
No 183
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=94.94 E-value=0.024 Score=41.41 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=36.4
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
+.+.|.+|...||..- +=+...|+.++||++.|+..|-..
T Consensus 6 q~~mv~~~s~~T~Mn~-e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 6 QLELLNKLHLETKLNA-EYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHHHCSCH-HHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6789999999999776 789999999999999999999663
No 184
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.93 E-value=0.077 Score=42.63 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=56.3
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
...++|.|+. +|+.+.-.+..++||.+|..-|......++..-+|+ |..+.+ + +.||.++||.++..|+|
T Consensus 15 ~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~--~~Gk~L--d--d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 15 KELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM--YKGLVP--E--DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp CCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB--SSSBCC--S--SSBHHHHCCCTTEEEEE
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCeeC--C--cCcHHHCCCCCCCEEEE
Confidence 3568888985 688888999999999999999988766666666676 666666 2 23999999999998876
No 185
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.91 E-value=0.12 Score=41.77 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=60.9
Q ss_pred CCCeEEEEEECCCCc--eEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCC--CCcccCCCCccCcccccCCCCCeeE
Q 012346 385 GPNVTQVLVRFPNGE--RKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNF--PRVVYSTDKFSLSLKEAGLHPQASL 460 (465)
Q Consensus 385 ~~~~~~i~iRlP~G~--r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~f--Pr~~~~~~~~~~TL~e~gL~p~~~L 460 (465)
+.+.++|.|..++.+ .+.++|..++||.+|-.-|+.....++..-.|+-.= ++.+..-.+.++||.+.|+.++.+|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 567899999987774 699999999999999999998876677777776432 2332121234789999999999998
Q ss_pred EEE
Q 012346 461 FVE 463 (465)
Q Consensus 461 ~ve 463 (465)
+|-
T Consensus 91 hlv 93 (97)
T 2kj6_A 91 HII 93 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 186
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=94.86 E-value=0.075 Score=45.88 Aligned_cols=69 Identities=9% Similarity=0.129 Sum_probs=56.8
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|.||.++|+.+.-.+..++||.+|..-|......++....|+-. .+.+. .+.||.+.|+.++.+|++.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~--g~~L~---d~~tL~~~~i~~~~~l~l~ 70 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET--TEECC---TTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC--CeECc---CcccHHHhccCCCCeeEEE
Confidence 578999999999999999999999999998776556677777643 55553 2689999999999998874
No 187
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.83 E-value=0.07 Score=45.01 Aligned_cols=94 Identities=12% Similarity=-0.010 Sum_probs=65.3
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCC-----
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKAS----- 244 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~----- 244 (465)
-..+|.+++ +....|+++|+++.+.+..|..+...+ ..+.+-... ++.+..+|++.. ..++..|++.
T Consensus 13 ~~~~f~~~~--~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~~~~ 85 (137)
T 2dj0_A 13 NDKTIDEEL--ERDKRVTWIVEFFANWSNDCQSFAPIY---ADLSLKYNCTGLNFGKVDVGRY--TDVSTRYKVSTSPLT 85 (137)
T ss_dssp CTTHHHHHH--HHSTTSCEEEEECCTTCSTTTTTHHHH---HHHHHHHCSSSCEEEECCTTTC--HHHHHHTTCCCCSSS
T ss_pred cHhhHHHHH--hcCCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEeCccC--HHHHHHccCcccCCc
Confidence 345677777 344567999999999998888876433 234444443 788888887654 3467889998
Q ss_pred -CCCcEEEEecCCCcceeeEEeeecCCChHHHH
Q 012346 245 -RYPFCAVVMPAANQRIALLQQVEGPKSPEEML 276 (465)
Q Consensus 245 -~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~ 276 (465)
.+|.+.++. .|. ++.++.|..+.+++.
T Consensus 86 ~~~Pt~~~~~--~G~---~~~~~~G~~~~~~l~ 113 (137)
T 2dj0_A 86 KQLPTLILFQ--GGK---EAMRRPQIDKKGRAV 113 (137)
T ss_dssp SCSSEEEEES--SSS---EEEEESCBCSSSCBC
T ss_pred CCCCEEEEEE--CCE---EEEEecCcCchHHHH
Confidence 999998884 353 456777877665543
No 188
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.82 E-value=0.12 Score=41.10 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=56.5
Q ss_pred CeEEEEEECCCCc--eEEEEecCCCcHHHHHHHHHhcC--CCCCcCeEEEeCCCCcccCCCCccCccccc--CCCCCeeE
Q 012346 387 NVTQVLVRFPNGE--RKERRFHSTAVVQLLYDYVDSLG--CLEVQNYSLVSNFPRVVYSTDKFSLSLKEA--GLHPQASL 460 (465)
Q Consensus 387 ~~~~i~iRlP~G~--r~~rrF~~~~tl~~l~~fv~~~~--~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~--gL~p~~~L 460 (465)
..++|.||.++|+ .+.-....++||.+|..-|.... ..++....|+ |..+.+.+ +.||.+. |+.++.+|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi--~~Gk~L~D---~~tL~~~~~~i~~~~~i 80 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI--YSGKLLLD---HQCLRDLLPKQEKRHVL 80 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE--ETTEECCS---SSCHHHHSCSSSCSEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE--ECCEECcC---cCCHHHHhcCCCCCCEE
Confidence 4578999999998 44445569999999999999875 4566778887 44667753 5799999 99999888
Q ss_pred EEE
Q 012346 461 FVE 463 (465)
Q Consensus 461 ~ve 463 (465)
++-
T Consensus 81 ~lv 83 (93)
T 1wgd_A 81 HLV 83 (93)
T ss_dssp EEE
T ss_pred EEE
Confidence 763
No 189
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=94.75 E-value=0.046 Score=46.92 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=38.5
Q ss_pred HHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.+++.|++..+|.++||++. | .++.+..|..+.+++...|...+.+-
T Consensus 108 ~~~~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~~ll~~~ 154 (158)
T 3eyt_A 108 RTMAAYQMRGTPSLLLIDKA-G---DLRAHHFGDVSELLLGAEIATLLGEA 154 (158)
T ss_dssp HHHHHTTCCSSSEEEEECTT-S---EEEEEEESCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCCCCCEEEEECCC-C---CEEEEEeCCCCHHHHHHHHHHHhccC
Confidence 47888999999999999973 5 46677889999999999888877653
No 190
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.72 E-value=0.078 Score=42.74 Aligned_cols=71 Identities=7% Similarity=0.091 Sum_probs=57.4
Q ss_pred CCCeEEEEEECCCCceE-EEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 385 GPNVTQVLVRFPNGERK-ERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 385 ~~~~~~i~iRlP~G~r~-~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
+.+.++|.||. +|+.+ .-.+..++|+.+|..-|......++..-.|+ |..+.+. | + ||.+.||.++..|++
T Consensus 4 ~~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi--~~Gk~L~--D-~-tL~~~~I~~g~~i~l 75 (96)
T 1wgg_A 4 GSSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM--VKGGTLK--D-D-DWGNIKMKNGMTVLM 75 (96)
T ss_dssp CCCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE--ETTEECC--S-S-CCCSCCCCSSCEEEC
T ss_pred CCcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE--ECCcCCC--C-C-CHHHCCCCCCCEEEE
Confidence 34578888996 67777 4889999999999999998876667777777 6677774 2 4 999999999998876
No 191
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=94.62 E-value=0.17 Score=43.34 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=63.5
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceee--
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL-- 262 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~v-- 262 (465)
..|+++|++..+.+..|..+...+ +.+.+-...++.+..+|++... .++..|++..+|.+.++.. |..+..
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~--~~~~~~~i~~~Pt~~~~~~--G~~v~~~~ 94 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEVP--DFNKMYELYDPCTVMFFFR--NKHIMIDL 94 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTCC--TTTTSSCSCSSCEEEEEET--TEEEEEEC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEccccCH--HHHHHcCCCCCCEEEEEEC--CcEEEEec
Confidence 589999999999988887775432 2344444456888888887543 3678899999999998853 532211
Q ss_pred ----EEeeecCCC-hHHHHHHHHHHHH
Q 012346 263 ----LQQVEGPKS-PEEMLMILQKVIE 284 (465)
Q Consensus 263 ----l~~i~G~~~-~~~~~~~L~~~~~ 284 (465)
-.++.|..+ .+++...|...+.
T Consensus 95 g~~~~~~~~g~~~~~~~l~~~i~~~~~ 121 (142)
T 1qgv_A 95 GTGNNNKINWAMEDKQEMVDIIETVYR 121 (142)
T ss_dssp C------CCSCCSCHHHHHHHHHHHHH
T ss_pred CCCCcceeeeecCcHHHHHHHHHHHHH
Confidence 024667664 7888888877664
No 192
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=94.59 E-value=0.044 Score=40.23 Aligned_cols=38 Identities=34% Similarity=0.647 Sum_probs=34.7
Q ss_pred chHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhh
Q 012346 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 3 ~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
+.+..|..|.--||++. ..|+++|+--||||-+|++.|
T Consensus 16 dmdavls~fvrstgaep-gLaRDlleGKnWDl~AAL~D~ 53 (73)
T 2l2d_A 16 DMDAVLSDFVRSTGAEP-GLARDLLEGKNWDLTAALSDY 53 (73)
T ss_dssp CHHHHHHHHHHHHCCCH-HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCc-chhHHhhccCCccHhHHhhhH
Confidence 46778999999999776 899999999999999999998
No 193
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=94.57 E-value=0.11 Score=39.34 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=56.4
Q ss_pred EEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecC
Q 012346 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGP 269 (465)
Q Consensus 190 lVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~ 269 (465)
+|++.++.+..|..+...+ +.+.+-...++.+...|+++.. .+++.|++..+|.+.+ .|. . ++.|.
T Consensus 5 vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~----~G~-~----~~~G~ 70 (85)
T 1nho_A 5 IEVFTSPTCPYCPMAIEVV---DEAKKEFGDKIDVEKIDIMVDR--EKAIEYGLMAVPAIAI----NGV-V----RFVGA 70 (85)
T ss_dssp EEEESCSSSCCSTTHHHHH---HHHHHHHCSSCCEEEECTTTCG--GGGGGTCSSCSSEEEE----TTT-E----EEECS
T ss_pred EEEEECCCCcchHHHHHHH---HHHHHHhcCCeEEEEEECCCCH--HHHHhCCceeeCEEEE----CCE-E----EEccC
Confidence 6788888888888876432 2333334446777778776443 4678899999999988 243 2 56788
Q ss_pred CChHHHHHHHHHHH
Q 012346 270 KSPEEMLMILQKVI 283 (465)
Q Consensus 270 ~~~~~~~~~L~~~~ 283 (465)
.+.+++.+.|...+
T Consensus 71 ~~~~~l~~~l~~~l 84 (85)
T 1nho_A 71 PSREELFEAINDEM 84 (85)
T ss_dssp SCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh
Confidence 88888888777654
No 194
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=93.58 E-value=0.0062 Score=46.55 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=54.3
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+|.||.++|+.+.-.+..++|+.+|..-+......++....|+ |..+.+. .+.||.+.|+.++++|++-
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~--~~gk~L~---d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI--FAGKELP---NHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 4778999999888899999999999999988765555666665 3345553 2689999999998888763
No 195
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=94.55 E-value=0.13 Score=42.61 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=65.8
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHh-----hccceEeecccCchHHHHHHHhCCCCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-----NENFVSWGGSIRASEGFKMSNSLKASR 245 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l-----~~~fv~w~~~v~~~Eg~~va~~l~~~~ 245 (465)
-..+|++.+. +..|+.||+++.+.+..|..+... | ..+.+.+ +.++.+...|++. ...++..|++..
T Consensus 21 ~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p~-~--~~la~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~ 92 (127)
T 3h79_A 21 TDETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMRL-W--DDLSMSQSQKRNHLTFVAARIDGEK--YPDVIERMRVSG 92 (127)
T ss_dssp CTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHHH-H--HHHHHHHHTSTTTTTEEEEEEETTT--CHHHHHHTTCCS
T ss_pred ChhhHHHHHh---CCCCCEEEEEECCccHHHHHHhHH-H--HHHHHHHHhcccCCCeEEEEEEccc--cHhHHHhcCCcc
Confidence 4456766654 458999999999988667666431 1 1222222 2357777777764 346788999999
Q ss_pred CCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 246 YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 246 ~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
||.+.++.. |.... .....|..+.+++.+.|..
T Consensus 93 ~Pt~~~~~~--g~~~~-~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 93 FPTMRYYTR--IDKQE-PFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp SSEEEEECS--SCSSS-CEECCSCCCHHHHHHHHHH
T ss_pred CCEEEEEeC--CCCCC-ceEecCCccHHHHHHHHHh
Confidence 999999875 33222 1245688898888776653
No 196
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=94.53 E-value=0.3 Score=44.60 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=65.3
Q ss_pred HHHHHhcCcEE-EEEEeCCCCCCchHHHhhcCCCHHHHHHhh----ccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 179 LQRSRSVFKLL-FVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 179 l~~Ak~e~K~L-lVyL~~~~~~~s~~f~r~~l~~~~v~~~l~----~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
++..+...+.+ +|++..+.+..|..+...+ ..+.+-.. .++.+...|++.. ..++..|++..+|++.++.
T Consensus 126 ~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~ 200 (226)
T 1a8l_A 126 KQAIRNIDQDVRILVFVTPTCPYCPLAVRMA---HKFAIENTKAGKGKILGDMVEAIEY--PEWADQYNVMAVPKIVIQV 200 (226)
T ss_dssp HHHHTTCCSCEEEEEEECSSCTTHHHHHHHH---HHHHHHHHHTTCCCEEEEEEEGGGC--HHHHHHTTCCSSCEEEEEE
T ss_pred HHHHHhcCCCcEEEEEeCCCCCccHHHHHHH---HHHHHhcccccCCcEEEEEEEcccC--HHHHHhCCCcccCeEEEEe
Confidence 33344444445 9999999998998887433 33444443 3677777776543 3568889999999987774
Q ss_pred cCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 254 PAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.|. .+.+..|..+.+++...|...+
T Consensus 201 --~G~---~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 201 --NGE---DRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp --TTE---EEEEEESCCCHHHHHHHHHHHH
T ss_pred --CCc---eeEEEcCCCCHHHHHHHHHHhh
Confidence 352 3567789999998888877654
No 197
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.081 Score=51.53 Aligned_cols=104 Identities=10% Similarity=0.040 Sum_probs=74.5
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
+|.+++ ++..|++||++..+.+..|..+...+ ..+.+.+...+.+..++++..+...+++.|++..||.+.++.
T Consensus 26 ~f~~~i---~~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~ 99 (298)
T 3ed3_A 26 SFDKAI---HNTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFR 99 (298)
T ss_dssp HHHHHH---TSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEE
T ss_pred HHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEE
Confidence 455555 24678999999999988887776433 345555555677777777766667889999999999999997
Q ss_pred cCCCcc--------------eeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 254 PAANQR--------------IALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 254 ~~~~~~--------------~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
. |.- -.......|..+.+.++..+...+..
T Consensus 100 ~--g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~ 143 (298)
T 3ed3_A 100 P--PKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRS 143 (298)
T ss_dssp C--CCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCC
T ss_pred C--CceeecccccccccccccccceeecCCcCHHHHHHHHHHhccc
Confidence 5 310 01244567899999999888766543
No 198
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=94.46 E-value=0.41 Score=41.35 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=38.0
Q ss_pred HHHHHhCCCCCCC---------------cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhhc
Q 012346 235 FKMSNSLKASRYP---------------FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (465)
Q Consensus 235 ~~va~~l~~~~~P---------------~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~ 287 (465)
..+++.|++...| .++||++. | .++.+..|..+++++...|...+.++.
T Consensus 104 ~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~-G---~i~~~~~g~~~~~~l~~~l~~ll~~~~ 167 (171)
T 2rli_A 104 AQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPD-G---LFTDYYGRSRSAEQISDSVRRHMAAFR 167 (171)
T ss_dssp HHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTT-S---CEEEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCC-C---eEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4678889988877 78888873 5 356667788999999999988876543
No 199
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=94.45 E-value=0.15 Score=44.65 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=59.1
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+...|.||.++|+.+.-....++|+.+|..-|......++....|+- -.+.+.+ +.||.+.|+.++.+|++-
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L~d---~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF--EGKPLED---QLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCT---TSBGGGGTCCTTCEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE--CCeecCC---CCCHHHcCCCCCCEEEEE
Confidence 44678888899999999999999999999999877666677888874 3466643 679999999999998874
No 200
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.38 E-value=0.097 Score=41.78 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=55.4
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..+|.||. |+.+.-.+..++||.+|..-|......++....|+-. .+.+. .+.||.+.|+.++.+|.+-
T Consensus 19 ~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~--Gk~L~---D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 19 SMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA--GAPLE---DEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp -CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET--TEECC---TTSBHHHHTCCSSCEEEEE
T ss_pred cEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC--CEECC---CCCcHHHCCCCCCCEEEEE
Confidence 46778887 8888889999999999999998876666777777643 56663 2689999999999998874
No 201
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=94.37 E-value=0.13 Score=45.11 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=58.4
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCC-CCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNF-PRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~f-Pr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..|.||..+|+.+.-.+..++||.+|-.-|......++....|+. | ..+.+. .+.||.+.|+.++.+|++-
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~-~~~g~~L~---d~~tL~~y~i~~~~~l~l~ 74 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAV-HPSGVALQ---DRVPLASQGLGPGSTVLLV 74 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEE-ETTCCBCC---TTSCGGGGTCCTTCEEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE-cCCCCCCC---CCCCHHHcCCCCCCEEEEE
Confidence 468899999999999999999999999999887666677777773 4 355663 3789999999999988764
No 202
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=94.31 E-value=0.068 Score=43.99 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=53.4
Q ss_pred eEEEEEECCCCceEEEEec-CCCcHHHHHHHHHhcCCCCCcCeEEE-eCC------CCc--ccC-CCCccCcccccCCCC
Q 012346 388 VTQVLVRFPNGERKERRFH-STAVVQLLYDYVDSLGCLEVQNYSLV-SNF------PRV--VYS-TDKFSLSLKEAGLHP 456 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~-~~~tl~~l~~fv~~~~~~~~~~f~L~-t~f------Pr~--~~~-~~~~~~TL~e~gL~p 456 (465)
...|+||.++|+. .-... .++||.+|..-|......++....|+ .+. |.. .+. ..+.+.||.+.||.+
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 3679999999964 34567 88999999999997765555666663 222 111 221 023478999999999
Q ss_pred CeeEEEEe
Q 012346 457 QASLFVEL 464 (465)
Q Consensus 457 ~~~L~ve~ 464 (465)
+.+|+|..
T Consensus 86 G~~L~l~~ 93 (107)
T 1wf9_A 86 GSMVYLAY 93 (107)
T ss_dssp TCEEECCC
T ss_pred CCEEEEEe
Confidence 99998853
No 203
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=94.30 E-value=0.26 Score=41.87 Aligned_cols=90 Identities=10% Similarity=0.086 Sum_probs=57.7
Q ss_pred cCcEEEEEEeCCCCCC--chHHHhhcCCCHHHHHHh-h-ccceEeecccCchH-----------------------HHHH
Q 012346 185 VFKLLFVYLHSPDHPD--TPAFCEGTLCNEVLAAFV-N-ENFVSWGGSIRASE-----------------------GFKM 237 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~--s~~f~r~~l~~~~v~~~l-~-~~fv~w~~~v~~~E-----------------------g~~v 237 (465)
.+|++||++..+.+.. |......+- .+.+-+ + .++.+.+.++++.. ...+
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l~---~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 108 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSELR---EIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV 108 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHHH---HHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHH---HHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence 4688888888887777 766543221 122222 2 24666666666442 2367
Q ss_pred HHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 238 SNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 238 a~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
++.|++..+|.++||++. |. ++.+. .+.+++.+.|...+.
T Consensus 109 ~~~~~v~~~P~~~lid~~-G~---i~~~~---~~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 109 AKQYSIYKIPANILLSSD-GK---ILAKN---LRGEELKKKIENIVE 148 (150)
T ss_dssp HHHTTCCSSSEEEEECTT-SB---EEEES---CCHHHHHHHHHHHHH
T ss_pred HHHcCCCccCeEEEECCC-CE---EEEcc---CCHHHHHHHHHHHHh
Confidence 888999999999999973 52 34332 377888777777664
No 204
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=94.29 E-value=0.04 Score=47.55 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=44.0
Q ss_pred HHHHHhhc-cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 213 VLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 213 ~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.+.++++. ++-+|..+.+ +...+++.|++..+|.++||+.. | .++.++.|..+.+++...|...+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~v~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~~~~~ 156 (164)
T 2h30_A 90 EFQKWYAGLNYPKLPVVTD--NGGTIAQNLNISVYPSWALIGKD-G---DVQRIVKGSINEAQALALIRNPNA 156 (164)
T ss_dssp HHHHHHTTSCCTTSCEEEC--TTCHHHHHTTCCSSSEEEEECTT-S---CEEEEEESCCCHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCCCcceEEEc--CchHHHHHcCCCccceEEEECCC-C---cEEEEEcCCCCHHHHHHHHHHHHH
Confidence 44455544 3322333332 22357788999999999999873 5 356677898999888888876654
No 205
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=94.28 E-value=0.045 Score=46.09 Aligned_cols=93 Identities=12% Similarity=0.111 Sum_probs=60.2
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCc-hHHHH-------------------H--H
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRA-SEGFK-------------------M--S 238 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~-~Eg~~-------------------v--a 238 (465)
+.-.+|++||++..+.+..|......+-..+.+.+.+.+ ++.+.+.++++ .+.++ + +
T Consensus 23 ~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 102 (142)
T 3ewl_A 23 SRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTR 102 (142)
T ss_dssp GGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHT
T ss_pred hhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhH
Confidence 333679999999988776666654444334556655543 67777777763 33321 2 3
Q ss_pred HhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 239 NSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 239 ~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
+.|++..+|.++||++. |. ++. +..+.+++.+.|..
T Consensus 103 ~~~~v~~~P~~~lid~~-G~---i~~---~~~~~~~l~~~l~~ 138 (142)
T 3ewl_A 103 QLYDIRATPTIYLLDGR-KR---VIL---KDTSMEQLIDYLAT 138 (142)
T ss_dssp TCSCCCSSSEEEEECTT-CB---EEE---CSCCHHHHHHHHHC
T ss_pred HHcCCCCCCeEEEECCC-CC---EEe---cCCCHHHHHHHHHH
Confidence 37899999999999973 52 333 45677777666653
No 206
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=94.28 E-value=0.12 Score=41.04 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=57.2
Q ss_pred CeEEEEEECCCCceEEE-EecCCCcHHHHHHHHHhcCCCCCcCeEEEeC-CCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKER-RFHSTAVVQLLYDYVDSLGCLEVQNYSLVSN-FPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~r-rF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~-fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...+|.|+. +|+.+.- ....++||.+|..-|......++..-.|+-. |-.+.+.+ +.||.+.||.++..|++-
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D---~~~L~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN---DVKLGALKLKPNTKIMMM 80 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT---TSBHHHHTCCTTEEEEEE
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCC---CCCHHHcCCCCCCEEEEE
Confidence 457788886 7877776 7788999999999999887777788888743 43455532 679999999999988864
No 207
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=94.26 E-value=0.042 Score=45.38 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=36.0
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
.+++|+|++++ |+.|.+.++..|..++||++.||...|.+..
T Consensus 66 ~~~qL~qL~eM-GF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 66 WQPQLQQLRDM-GIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp THHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 36789999985 7777689999999999999999999997643
No 208
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=94.18 E-value=0.24 Score=45.53 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=70.8
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhcc---ceEeecccCchHHHHHHHhCCCCCCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNEN---FVSWGGSIRASEGFKMSNSLKASRYP 247 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~---fv~w~~~v~~~Eg~~va~~l~~~~~P 247 (465)
-..+|++++ .+.|+++|++..+.+..|..+...+ ..+.+.+... +.+..+|++.. ..+++.|++..+|
T Consensus 21 ~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~P 91 (241)
T 3idv_A 21 NDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILKDKDPPIPVAKIDATSA--SVLASRFDVSGYP 91 (241)
T ss_dssp CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHTSSSCCCEEEEETTTC--HHHHHHTTCCSSS
T ss_pred cccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhhcCCceEEEEEeccCC--HHHHHhcCCCcCC
Confidence 455666655 4689999999999887777775432 2333334333 78888877643 3678899999999
Q ss_pred cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 248 ~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
++.++.. |. .+ +..|..+.+++.+.+...+..
T Consensus 92 t~~~~~~--g~---~~-~~~g~~~~~~l~~~i~~~~~~ 123 (241)
T 3idv_A 92 TIKILKK--GQ---AV-DYEGSRTQEEIVAKVREVSQP 123 (241)
T ss_dssp EEEEEET--TE---EE-ECCSCSCHHHHHHHHHHHHST
T ss_pred EEEEEcC--CC---cc-cccCcccHHHHHHHHhhccCc
Confidence 9999863 53 23 467889999998888776653
No 209
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=94.11 E-value=0.05 Score=46.97 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=58.9
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCc-----------------hHHHHHHHhCCC
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRA-----------------SEGFKMSNSLKA 243 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~-----------------~Eg~~va~~l~~ 243 (465)
+.-.+|++||++.++.+..|......+ ..+.+-+. .++.+.+.+++. .....+++.|++
T Consensus 37 ~~~~gk~vll~F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 113 (158)
T 3hdc_A 37 AQYRGKIVLVNFWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGA 113 (158)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTC
T ss_pred HHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCC
Confidence 333679999999987665554443222 12222222 367777777654 113467889999
Q ss_pred CCCCcEEEEecCCCcceeeEEeeecCCC--hHHHHHHHH
Q 012346 244 SRYPFCAVVMPAANQRIALLQQVEGPKS--PEEMLMILQ 280 (465)
Q Consensus 244 ~~~P~i~ii~~~~~~~~~vl~~i~G~~~--~~~~~~~L~ 280 (465)
..+|.++||++. | .++.+..|..+ ..++++.+.
T Consensus 114 ~~~P~~~lid~~-G---~i~~~~~G~~~~~~~~~~~~~~ 148 (158)
T 3hdc_A 114 NRLPDTFIVDRK-G---IIRQRVTGGIEWDAPKVVSYLK 148 (158)
T ss_dssp CSSSEEEEECTT-S---BEEEEEESCCCTTSHHHHHHHH
T ss_pred CCcceEEEEcCC-C---CEEEEEeCCCccchHHHHHHHH
Confidence 999999999973 5 36677778654 456666654
No 210
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=94.06 E-value=0.13 Score=46.86 Aligned_cols=70 Identities=10% Similarity=0.192 Sum_probs=58.6
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..|.||..+|+.+.-....++||.+|..-|......++....|+ |..+.+.+ +.||.+.|+.++.+|++-
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi--~~Gk~L~D---~~tL~dygI~~gstI~Lv 175 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQKESTLHLV 175 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE--ETTEECCT---TCBGGGGTCCTTCEEEEC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE--ECCEECCC---CCCHHHCCCCCCCEEEEE
Confidence 67889999999999999999999999999988766566677776 45666643 679999999999999874
No 211
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=94.02 E-value=0.36 Score=41.55 Aligned_cols=88 Identities=9% Similarity=0.144 Sum_probs=59.7
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccC-------------------chHH--------
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIR-------------------ASEG-------- 234 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~-------------------~~Eg-------- 234 (465)
-.+|++||++.+..+..|.... +.+.++.++ ++.+...+++ +.+.
T Consensus 35 ~~gk~~lv~F~~~~C~~C~~~~------~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (165)
T 3ha9_A 35 VGGDVVILWFMAAWCPSCVYMA------DLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANY 108 (165)
T ss_dssp CCSSEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHH
T ss_pred hCCCEEEEEEECCCCcchhhhH------HHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHc
Confidence 3578999999988777766654 344444443 5666666665 2222
Q ss_pred -----------HHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCC-ChHHHHHHHHHHH
Q 012346 235 -----------FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPK-SPEEMLMILQKVI 283 (465)
Q Consensus 235 -----------~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~-~~~~~~~~L~~~~ 283 (465)
..+++.|++..+|+++||++. |. ++. .|.. +.+++...|...+
T Consensus 109 ~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~-G~---i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 109 GDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKS-SN---VLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp SCTTSEEEECCSHHHHHTTCCSSSEEEEEETT-CC---EEE--EEESCCHHHHHHHHHHC-
T ss_pred CCCCeeEEeChHHHHHHhCCCCceEEEEEcCC-Cc---EEE--eCCCCCHHHHHHHHHHHh
Confidence 167788999999999999973 42 233 5777 8888888776654
No 212
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.97 E-value=0.25 Score=41.37 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=59.2
Q ss_pred CeEEEEEE-CCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVR-FPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iR-lP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
..++|.|. .|+|.+++--|..+.|+.+|-+-+......+...-.|+- --|.+.+ +.||.+.|+.|+.++++.
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy--~GKiLKD---~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY--SGKILKN---NETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE--TTEEECS---SCCHHHHSCCSSCEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE--CCeEcCC---cchHHHcCCCCCCEEEEE
Confidence 45778887 889999999999999999999999887655566666654 4778864 559999999999999876
No 213
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.12 Score=41.01 Aligned_cols=70 Identities=9% Similarity=0.135 Sum_probs=55.9
Q ss_pred EEEEEECCCCceEEEE--ecCCCcHHHHHHHH-HhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCC-CCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERR--FHSTAVVQLLYDYV-DSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGL-HPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rr--F~~~~tl~~l~~fv-~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL-~p~~~L~ve 463 (465)
..|-||..+|+.+.-. +..++|+.+|-.-| ......++...+|+ |-.+.+.+ +.||.++|+ .++++|+|-
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi--~~Gk~L~D---~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLL--LKGKVLHD---NLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEE--ETTEECCT---TCBHHHHCCCGGGCEEEEE
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEE--ECCEECcC---cCCHHHcCCCCCCCEEEEE
Confidence 4688999999877665 56999999999999 77766677888887 45677753 679999999 578888764
No 214
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.93 E-value=0.24 Score=40.74 Aligned_cols=97 Identities=10% Similarity=0.159 Sum_probs=66.8
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
-..+|.++++ .+ .+|++..+.+..|..+...+ ..+.+.+.. ++.+...|++... .++..|++..+|++
T Consensus 13 ~~~~f~~~~~-----~~-vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~Pt~ 81 (126)
T 1x5e_A 13 TDENWRELLE-----GD-WMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVTEQP--GLSGRFIINALPTI 81 (126)
T ss_dssp CTTTHHHHTS-----SE-EEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETTTCH--HHHHHTTCCSSSEE
T ss_pred cHHHHHHHhC-----CC-EEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECcCCH--HHHHHcCCcccCEE
Confidence 3456665542 23 78999998887777776433 234444443 6888888876543 46788999999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
+++. .|. +.+..|..+.+++.+.|...+.
T Consensus 82 ~~~~--~G~----~~~~~G~~~~~~l~~~l~~~~~ 110 (126)
T 1x5e_A 82 YHCK--DGE----FRRYQGPRTKKDFINFISDKEW 110 (126)
T ss_dssp EEEE--TTE----EEECCSCCCHHHHHHHHHTCGG
T ss_pred EEEe--CCe----EEEeecCCCHHHHHHHHHHHhh
Confidence 9983 352 2577899999988888876553
No 215
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.91 E-value=0.14 Score=42.00 Aligned_cols=72 Identities=10% Similarity=0.145 Sum_probs=57.0
Q ss_pred CeEEEEEECCCC---ceEEEEecC---------CCcHHHHHHHHHhcC--CCCCcC-eEEEeCCCCcccCCCCccCcccc
Q 012346 387 NVTQVLVRFPNG---ERKERRFHS---------TAVVQLLYDYVDSLG--CLEVQN-YSLVSNFPRVVYSTDKFSLSLKE 451 (465)
Q Consensus 387 ~~~~i~iRlP~G---~r~~rrF~~---------~~tl~~l~~fv~~~~--~~~~~~-f~L~t~fPr~~~~~~~~~~TL~e 451 (465)
..++|.||..+| +.+.-.|.. ++||.+|...|.... ..++.. ..|+ |-.+.+.+ +.||.+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi--~~Gk~L~D---~~tL~~ 85 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLI--YCGRKLKD---DQTLDF 85 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEE--ETTEECCT---TCBHHH
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEE--ECCeECCC---CCcHHH
Confidence 347899999999 777778766 699999999998876 556677 7776 44666642 689999
Q ss_pred cCCCCCeeEEEE
Q 012346 452 AGLHPQASLFVE 463 (465)
Q Consensus 452 ~gL~p~~~L~ve 463 (465)
.|+.++.+|++-
T Consensus 86 y~i~~g~~i~lv 97 (107)
T 1x1m_A 86 YGIQPGSTVHVL 97 (107)
T ss_dssp HTCCTTCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 999999988764
No 216
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=93.86 E-value=0.25 Score=52.03 Aligned_cols=107 Identities=9% Similarity=-0.007 Sum_probs=78.6
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCCc
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPF 248 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P~ 248 (465)
..+|.+.+ .+..|+.+|++..+.+..|..+.-.+ +.+.+-+.. ++.+...|++..+...+++.|++..||.
T Consensus 19 ~~~f~~~v---~~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PT 92 (519)
T 3t58_A 19 ADSVRPTV---LGSSSAWAVEFFASWCGHAIAFAPTW---KELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPT 92 (519)
T ss_dssp TTTHHHHH---SSCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSE
T ss_pred hHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCE
Confidence 44565544 24569999999999887777776433 345555554 6888899988777788999999999999
Q ss_pred EEEEecC--CCcceeeEEeeecCCChHHHHHHHHHHHHhhc
Q 012346 249 CAVVMPA--ANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (465)
Q Consensus 249 i~ii~~~--~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~~ 287 (465)
+.++... .|. .+....|..+++++.+.|...+..+.
T Consensus 93 l~~f~~g~~~G~---~~~~~~g~~~~~~L~~~l~~~l~~~~ 130 (519)
T 3t58_A 93 VRFFQAFTKNGS---GATLPGAGANVQTLRMRLIDALESHR 130 (519)
T ss_dssp EEEECTTCCSCC---CEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred EEEEcCcccCCC---ceeEecCCCCHHHHHHHHHHHHhhcc
Confidence 9999852 121 23345577899999999998887654
No 217
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.82 E-value=0.045 Score=43.02 Aligned_cols=41 Identities=10% Similarity=0.234 Sum_probs=36.3
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
.+++|.+++++ |++. +.|+..|..++||++.|+.-.|.+.+
T Consensus 29 ~ee~I~~Lv~M-GF~~-~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYM-GFDT-VVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHH-SCCH-HHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 36899999998 9877 89999999999999999999998443
No 218
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=93.76 E-value=0.19 Score=40.73 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=54.2
Q ss_pred CCeEEEEEECCCCc--eEEEEecCCCcHHHHHHHHHhc-C-CCCCcCeEEEeCCCCcccCCCCccCccccc--CCCCCee
Q 012346 386 PNVTQVLVRFPNGE--RKERRFHSTAVVQLLYDYVDSL-G-CLEVQNYSLVSNFPRVVYSTDKFSLSLKEA--GLHPQAS 459 (465)
Q Consensus 386 ~~~~~i~iRlP~G~--r~~rrF~~~~tl~~l~~fv~~~-~-~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~--gL~p~~~ 459 (465)
+..+.|.||.++|+ .+.-....++||.+|..-|... . ..++...+|+ |--|.+.+ +.||.+. |+.+..+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI--y~Gk~L~D---~~tL~~y~~~I~~~~t 95 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV--YSGRLLPD---HLQLKDILRKQDEYHM 95 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE--ETTEEECT---TSBTHHHHTTTCSEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE--ECCEECCC---CCCHHHHhcCCCCCCE
Confidence 35689999999998 4555669999999999999974 2 3223667776 44667753 6799999 9999888
Q ss_pred EEE
Q 012346 460 LFV 462 (465)
Q Consensus 460 L~v 462 (465)
|.+
T Consensus 96 ihL 98 (99)
T 2kdb_A 96 VHL 98 (99)
T ss_dssp EEE
T ss_pred EEe
Confidence 875
No 219
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=93.71 E-value=0.26 Score=42.25 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=54.9
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCchHHH---------------------HHHHhCC
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEGF---------------------KMSNSLK 242 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~Eg~---------------------~va~~l~ 242 (465)
.+|++||++..+.+..|......+ ..+.+-+. .++.+.+.++++.+.. .++..|+
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLAL---RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN 110 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred CCCEEEEEEEcCCChhhHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence 467888888876554444333211 11222222 3477777776654421 2778899
Q ss_pred CCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 243 ~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
+..+|.++||++. | .++.+..|..+.++.+..+
T Consensus 111 v~~~P~~~lid~~-G---~i~~~~~g~~~~e~~~~~~ 143 (152)
T 2lrt_A 111 VTNLPSVFLVNRN-N---ELSARGENIKDLDEAIKKL 143 (152)
T ss_dssp CCSCSEEEEEETT-T---EEEEETTTCSCHHHHHHHH
T ss_pred cccCceEEEECCC-C---eEEEecCCHHHHHHHHHHH
Confidence 9999999999973 5 4677777877777666544
No 220
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.65 E-value=0.079 Score=38.06 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=36.0
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~~ 47 (465)
.+.+|.|++++ |+.|.+..+.+|.+++|||+.||..-+....+
T Consensus 9 ~a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 9 TAALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 34588999886 88887999999999999999999998765443
No 221
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=93.52 E-value=0.052 Score=37.93 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=35.9
Q ss_pred chHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCC
Q 012346 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (465)
Q Consensus 3 ~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~ 45 (465)
+..++|.++.++ |++. ..|+..|.+++||++.|..-.|.+.
T Consensus 3 ~e~eaI~rL~~m-GF~~-~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKAL-GFPE-SLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTT-TCCH-HHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 456788899888 8888 8999999999999999999998754
No 222
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=93.39 E-value=0.35 Score=41.15 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=56.0
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCC-CCCcCeEEEeCCC---------------------------CcccC
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGC-LEVQNYSLVSNFP---------------------------RVVYS 441 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~-~~~~~f~L~t~fP---------------------------r~~~~ 441 (465)
.|.||||||...+.+-..+.++..+-..|..... .....|.|+...| +..+.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 4899999999999999999999999888865432 2335688886554 22222
Q ss_pred CC------CccCcccccCCCCCeeEEEE
Q 012346 442 TD------KFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 442 ~~------~~~~TL~e~gL~p~~~L~ve 463 (465)
.+ +.+.||.|-|+.++.+|++.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 11 35899999999999999874
No 223
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.081 Score=43.07 Aligned_cols=70 Identities=9% Similarity=0.138 Sum_probs=54.9
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.++|.||. +|+.+.-.+..++||.+|..-|......++....|+- -.+.+.+ +.||.+.|+.++.+|+|-
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D---~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY--SGKILKD---DQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE--TTEECCT---TSBTTTTTCCTTEEEEEC
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE--CCEECCC---cCcHHHCCCCCCCEEEEE
Confidence 46788886 8888888999999999999999876655566666764 3455542 689999999999998873
No 224
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.30 E-value=0.13 Score=43.57 Aligned_cols=90 Identities=11% Similarity=0.064 Sum_probs=58.5
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
.|.+++..+ ...|+++|++..+.+..|..+.. .+.++.++ ++.|...+++... ..|++..+|++++
T Consensus 19 ~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~p------~l~~la~~~~~v~~~~vd~~~~~-----~~~~i~~~Pt~~~ 86 (135)
T 2dbc_A 19 QYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVNQ------HLSVLARKFPETKFVKAIVNSCI-----EHYHDNCLPTIFV 86 (135)
T ss_dssp HHHHHTTTC-CSSCEEEEEECCTTCHHHHHHHH------HHHHHHHHCSSEEEEEECCSSSC-----SSCCSSCCSEEEE
T ss_pred HHHHHHHhc-CCCCEEEEEEECCCChHHHHHHH------HHHHHHHHCCCcEEEEEEhhcCc-----ccCCCCCCCEEEE
Confidence 344444433 24589999999998877777653 33444443 5677778876542 6799999999988
Q ss_pred EecCCCcceeeEEeeecCC-------ChHHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPK-------SPEEMLMILQ 280 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~-------~~~~~~~~L~ 280 (465)
+. .|. ++.++.|.. +.+++...|.
T Consensus 87 ~~--~G~---~v~~~~G~~~~~~~~~~~~~l~~~l~ 117 (135)
T 2dbc_A 87 YK--NGQ---IEGKFIGIIECGGINLKLEELEWKLS 117 (135)
T ss_dssp ES--SSS---CSEEEESTTTTTCTTCCHHHHHHHHH
T ss_pred EE--CCE---EEEEEEeEEeeCCCcCCHHHHHHHHH
Confidence 85 353 456677765 4555444443
No 225
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=93.30 E-value=0.18 Score=38.00 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=56.3
Q ss_pred cEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEee
Q 012346 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQV 266 (465)
Q Consensus 187 K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i 266 (465)
+..+|++.++.+..|..+...+ ..+.+-...++.+...|+++.. .+++.|++..+|.+.+ .|. . ++
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~----~G~-~----~~ 68 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVV---EEVANEMPDAVEVEYINVMENP--QKAMEYGIMAVPTIVI----NGD-V----EF 68 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHH---HHHHHHCSSSEEEEEEESSSSC--CTTTSTTTCCSSEEEE----TTE-E----EC
T ss_pred ceEEEEEeCCCCCchHHHHHHH---HHHHHHcCCceEEEEEECCCCH--HHHHHCCCcccCEEEE----CCE-E----ee
Confidence 3568888899998888876422 2233333336777777776433 4577899999999988 242 2 66
Q ss_pred ecCCChHHHHHHHHHH
Q 012346 267 EGPKSPEEMLMILQKV 282 (465)
Q Consensus 267 ~G~~~~~~~~~~L~~~ 282 (465)
.|..+.+++.+.|...
T Consensus 69 ~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 69 IGAPTKEALVEAIKKR 84 (85)
T ss_dssp CSSSSSHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHh
Confidence 7888888888877654
No 226
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.13 E-value=0.096 Score=40.16 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=35.9
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
..++|.+++++ |++. +.|+..|..++||++.|+.-.|.+..
T Consensus 29 ~~~~v~~L~~M-GF~~-~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 29 DQSSVDTLLSF-GFAE-DVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CHHHHHHHHHH-TCCH-HHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 45789999987 8877 89999999999999999999987654
No 227
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=93.12 E-value=1.5 Score=37.56 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=71.4
Q ss_pred HHHHhhCCCCCCccccCHHHHHHHHHhcCcEEEEEEeCCCC--CCchHHHhhcCCCHHHHHHhhc---cceEeecccCch
Q 012346 158 VFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDH--PDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRAS 232 (465)
Q Consensus 158 ~~~~~yg~~~p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~--~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~ 232 (465)
.+.++.|- +..-..+|++.+. +..++.||.+..+.+ ..|... .|-+-++-++ .+.|+.+|++
T Consensus 10 rl~~~~g~--~~vt~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~i------aPvleela~e~~~~v~~~KVdvD-- 76 (137)
T 2qsi_A 10 AAARPNAP--TLVDEATVDDFIA---HSGKIVVLFFRGDAVRFPEAADL------AVVLPELINAFPGRLVAAEVAAE-- 76 (137)
T ss_dssp -------C--EEECTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHH------HHHHHHHHHTSTTTEEEEEECGG--
T ss_pred HHHHhcCC--cccCHhHHHHHHh---cCCCcEEEEEeCCccCCCchhhH------HhHHHHHHHHccCCcEEEEEECC--
Confidence 33444442 3446678887773 344699999998644 334332 2333333333 5677777764
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 233 EGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 233 Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
+.-.++..|++...|+++++-. | +++.++.|..+.+++.+.|...+
T Consensus 77 e~~~la~~ygV~siPTlilFkd--G---~~v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 77 AERGLMARFGVAVCPSLAVVQP--E---RTLGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp GHHHHHHHHTCCSSSEEEEEEC--C---EEEEEEESCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHcCCccCCEEEEEEC--C---EEEEEEeCCCCHHHHHHHHHHHh
Confidence 5667899999999999999874 5 46889999999999988887766
No 228
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=93.11 E-value=0.29 Score=43.69 Aligned_cols=69 Identities=10% Similarity=0.137 Sum_probs=57.2
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.|.||..+|+.+.-....++|+.+|..-|......++....|+-. .+.+. .+.||.+.|+.++.+|++-
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~--Gk~L~---D~~tL~~y~I~~gstI~Lv 70 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLSDYNIQKESTLHLV 70 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET--TEECC---TTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC--Ccccc---CcCcHHHcCCCCCCEEEEE
Confidence 578999999999999999999999999998876666777888753 45553 2679999999999998874
No 229
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=93.07 E-value=1.1 Score=40.95 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=67.5
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc---cceEeecccCchHHHHHHHhCCCCCCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYP 247 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~---~fv~w~~~v~~~Eg~~va~~l~~~~~P 247 (465)
-..+|.+++ ...+..+|++..+.+..|..+...+ ..+.+-+.. ++.+...|++... .+++.|++..+|
T Consensus 136 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~P 206 (241)
T 3idv_A 136 TKENFDEVV----NDADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDATAET--DLAKRFDVSGYP 206 (241)
T ss_dssp CTTTHHHHH----HHCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETTTCH--HHHHHTTCCSSS
T ss_pred cHHHHHHhh----ccCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECCCCH--HHHHHcCCcccC
Confidence 456677666 3468999999999887777765322 223333332 2777777766443 578899999999
Q ss_pred cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 248 ~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.+.++.. |. .+. ..|..+.+++++.|....
T Consensus 207 t~~~~~~--g~---~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 207 TLKIFRK--GR---PYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp EEEEEET--TE---EEE-CCSCCSHHHHHHHHHHHT
T ss_pred EEEEEEC--Ce---EEE-ecCCCCHHHHHHHHHhhh
Confidence 9998874 52 233 678899999988887654
No 230
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=92.89 E-value=0.26 Score=43.74 Aligned_cols=72 Identities=8% Similarity=0.110 Sum_probs=57.9
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+...|.||..+|+.+.-++..++||.+|..-|......++....|+. -.+.+. .+.||.+.|+.++.+|++-
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~---D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE--TTEECC---TTSBSGGGTCCTTCEEEEC
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE--CCccCC---CCCcHHHhCCCCCCEEEEE
Confidence 34567778888888888999999999999999887666677788874 355664 2679999999999999874
No 231
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=92.73 E-value=0.44 Score=49.43 Aligned_cols=103 Identities=12% Similarity=0.140 Sum_probs=75.2
Q ss_pred ccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCCCCCc
Q 012346 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPF 248 (465)
Q Consensus 170 f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~~~P~ 248 (465)
+-..+|.+++ +..+++||+++.+.+..|..+...+ ..+.+-++. ++.+..+|.+.. ..+++.|++..||+
T Consensus 19 l~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt 89 (504)
T 2b5e_A 19 LATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEY---VKAAETLVEKNITLAQIDCTEN--QDLCMEHNIPGFPS 89 (504)
T ss_dssp CCTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTTCEEEEEETTTC--HHHHHHTTCCSSSE
T ss_pred CCHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhccCCeEEEEEECCCC--HHHHHhcCCCcCCE
Confidence 3456788876 3589999999999987787776432 345555555 488888887654 45889999999999
Q ss_pred EEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 249 i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
+.++.. |.. ....+..|..+.+.+.+.|...+.
T Consensus 90 ~~~~~~--g~~-~~~~~~~G~~~~~~l~~~l~~~~~ 122 (504)
T 2b5e_A 90 LKIFKN--SDV-NNSIDYEGPRTAEAIVQFMIKQSQ 122 (504)
T ss_dssp EEEEET--TCT-TCEEECCSCCSHHHHHHHHHHHTS
T ss_pred EEEEeC--Ccc-ccceeecCCCCHHHHHHHHHHhcC
Confidence 999864 431 114467799999999998877653
No 232
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.59 E-value=0.55 Score=37.43 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=57.7
Q ss_pred eEEEEEECCCCc-eEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCC-Cccc-CCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGE-RKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFP-RVVY-STDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~-r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fP-r~~~-~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.++|.|+..++. ...+++..++||.+|..-|......++....|+-.-+ .+.+ .-.+.+.||.+.|+.++.+|+|.
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 478888876664 5899999999999999999988777777777765542 2321 11123789999999999999884
No 233
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=92.50 E-value=0.48 Score=47.34 Aligned_cols=95 Identities=4% Similarity=0.010 Sum_probs=60.1
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccC------chH-------------------HHHHH
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIR------ASE-------------------GFKMS 238 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~------~~E-------------------g~~va 238 (465)
.+|++||++..+.+..|......+ ..+.+-+. .++.+.+++++ +++ ...++
T Consensus 81 ~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~ 157 (352)
T 2hyx_A 81 RGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATW 157 (352)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHH
Confidence 467888888876665444433211 11222222 24666666543 122 13567
Q ss_pred HhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 239 NSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 239 ~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
+.|++..+|.++||+.. | .++.+..|..+.+++...|...+.+.
T Consensus 158 ~~ygV~~~Pt~~lID~~-G---~Iv~~~~G~~~~~~l~~~I~~lL~e~ 201 (352)
T 2hyx_A 158 TNYRNRYWPAEYLIDAT-G---TVRHIKFGEGDYNVTETLVRQLLNDA 201 (352)
T ss_dssp HHTTCCEESEEEEECTT-S---BEEEEEESBCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCccCEEEEEeCC-C---eEEEEEcCCCCHHHHHHHHHHHHhhc
Confidence 78999999999999873 5 35677889889998888888777543
No 234
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=92.38 E-value=0.25 Score=50.88 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=73.1
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
..+|.+++ ......+++||+++.+.+..|..+...+ +.+.+.++..+.+..+|.+. ...+++.|++..||++.+
T Consensus 8 ~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Ptl~~ 81 (481)
T 3f8u_A 8 DDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLKGIVPLAKVDCTA--NTNTCNKYGVSGYPTLKI 81 (481)
T ss_dssp TTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCCEEEEETTT--CHHHHHHTTCCEESEEEE
T ss_pred HHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHhcCCCCCCEEEE
Confidence 45677666 2223449999999999987787776433 44555555566677777654 346789999999999988
Q ss_pred EecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
+.. |. .+.+..|..+.+.+++.+...+.
T Consensus 82 ~~~--g~---~~~~~~G~~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 82 FRD--GE---EAGAYDGPRTADGIVSHLKKQAG 109 (481)
T ss_dssp EET--TE---EEEECCSCSSHHHHHHHHHHHTS
T ss_pred EeC--Cc---eeeeecCccCHHHHHHHHHhhcc
Confidence 853 52 35677899999999998877654
No 235
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.37 E-value=0.11 Score=38.47 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=35.1
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
..++|.|++++ |++. +.|+..|..++||+|.|+.-.|.+
T Consensus 9 ~~~~v~~L~~M-GF~~-~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 9 PEDCVTTIVSM-GFSR-DQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CHHHHHHHHHH-TCCH-HHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHhC
Confidence 46889999996 9887 899999999999999999998874
No 236
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=92.33 E-value=0.99 Score=38.94 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=72.2
Q ss_pred HHHHHHhhCCCCCCccccCHHHHHHHHHhcCcEEEEEEeCCC--CCCchHHHhhcCCCHHHHHHhhc---c-ceEeeccc
Q 012346 156 VAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPD--HPDTPAFCEGTLCNEVLAAFVNE---N-FVSWGGSI 229 (465)
Q Consensus 156 ~~~~~~~yg~~~p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~--~~~s~~f~r~~l~~~~v~~~l~~---~-fv~w~~~v 229 (465)
++.+.++ |-. ..-..+|++.+. ..++.||++..+. +..|..+ .|-+-++-++ . +.|+.+|+
T Consensus 11 ~~rl~~~-g~~--~~t~~~F~~~v~----~~~~vlVdF~a~~crCgpCk~i------aPvleela~e~~g~~v~~~KVdv 77 (140)
T 2qgv_A 11 WQRMLAR-GWT--PVSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDN------PVMIGELLHEFPDYTWQVAIADL 77 (140)
T ss_dssp HHHHHHT-TCE--ECCHHHHHHHHH----TCSSEEEEECCCTTTCTTTTHH------HHHHHHHHTTCTTSCCEEEECCH
T ss_pred HHHHHhc-CCc--cCCHHHHHHHHh----CCCCEEEEEeCCcccCCcHHHH------HhHHHHHHHHcCCCeEEEEEEEC
Confidence 3444455 533 334566777662 4567788888653 3333222 3444444443 3 67777776
Q ss_pred CchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 230 RASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 230 ~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
+ +.-.++..|++.+.|+++++-. | +++.++.|..+.+++...|...+
T Consensus 78 D--e~~~lA~~ygV~sIPTlilFk~--G---~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 78 E--QSEAIGDRFGAFRFPATLVFTG--G---NYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp H--HHHHHHHHHTCCSSSEEEEEET--T---EEEEEEESCCCHHHHHHHHHHHH
T ss_pred C--CCHHHHHHcCCccCCEEEEEEC--C---EEEEEEecCCCHHHHHHHHHHHh
Confidence 4 5667899999999999998864 5 46789999999999988888766
No 237
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=92.31 E-value=0.39 Score=47.03 Aligned_cols=73 Identities=8% Similarity=0.119 Sum_probs=60.6
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
++..+|.||..+|+.+.-.+..++||.+|..-|......++....|+- ..+.+. .+.||.+.|+.++++|+|-
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~--~Gk~L~---D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE--TTEECC---TTSBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe--CCeecC---CCCCHHHcCCCCCCEEEEE
Confidence 356889999999999999999999999999999887666667777774 356664 2689999999999998874
No 238
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=91.49 E-value=0.025 Score=47.19 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=37.5
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
+-.|+|+.+|||+.|...-...|..++.||+.||..+-+...
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~ 60 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERV 60 (129)
Confidence 347899999999999999999999999999999999977544
No 239
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.12 E-value=0.18 Score=39.78 Aligned_cols=39 Identities=15% Similarity=0.354 Sum_probs=35.1
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~ 45 (465)
.++|.|+.++ |++. +.|+..|..++||+|.|+.-.|+..
T Consensus 22 ~~~I~qL~~M-GF~~-~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDM-GFPR-EPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHH-TCCH-HHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 6789999996 9888 8999999999999999999988754
No 240
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.11 E-value=0.46 Score=37.49 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=56.2
Q ss_pred eEEEEEECCCCceEE--E-EecCCCcHHHHHHHHHhc-CCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 388 VTQVLVRFPNGERKE--R-RFHSTAVVQLLYDYVDSL-GCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~--r-rF~~~~tl~~l~~fv~~~-~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...|-|+...|+... - ....++||.+|..-|... ....+..-.|+-.+-.+++.+ +.||.+.|+.++++|+|.
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D---~~tL~~y~i~~~stl~~K 86 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKD---EDVLQKLPVGTTATLYFR 86 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCT---TCBTTTSSCCSEEEEEEC
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCC---CCCHHHcCCCCCCEEEEE
Confidence 366888989887753 3 788999999999999983 444566677766554566642 679999999999998874
No 241
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=91.95 E-value=0.24 Score=41.59 Aligned_cols=70 Identities=11% Similarity=0.165 Sum_probs=42.3
Q ss_pred CcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCch-HH---------------------HHHHHhCC
Q 012346 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRAS-EG---------------------FKMSNSLK 242 (465)
Q Consensus 186 ~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~-Eg---------------------~~va~~l~ 242 (465)
+|++||++..+.+..|......+-.++.+.+.+. .++.+.+.++++. +. ..++..|+
T Consensus 31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 110 (142)
T 3eur_A 31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD 110 (142)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence 5777777777665555444433322222443332 3566666665543 22 23577899
Q ss_pred CCCCCcEEEEecC
Q 012346 243 ASRYPFCAVVMPA 255 (465)
Q Consensus 243 ~~~~P~i~ii~~~ 255 (465)
+..+|.++||+..
T Consensus 111 v~~~P~~~lid~~ 123 (142)
T 3eur_A 111 LRAIPTLYLLDKN 123 (142)
T ss_dssp CTTCSEEEEECTT
T ss_pred CCcCCeEEEECCC
Confidence 9999999999973
No 242
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=91.82 E-value=0.11 Score=46.47 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=34.9
Q ss_pred HHHHhCCCCCCCcEEEEecCCCcceeeEEe---------eecCCChHHHHHHHHHHHHhh
Q 012346 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQ---------VEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~~~~~vl~~---------i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.+++.|++..+|.++||++. |. ++.+ ..|..+.+++...|...+...
T Consensus 121 ~~~~~~~v~~~P~~~lid~~-G~---i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 176 (196)
T 2ywi_A 121 EVAKAYDAACTPDFYIFDRD-LK---CVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR 176 (196)
T ss_dssp HHHHHHTCCEESEEEEEETT-CB---EEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCCCCeEEEEcCC-Ce---EEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence 46778899999999999973 52 3333 457778899998888877643
No 243
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=91.78 E-value=1 Score=34.67 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=55.1
Q ss_pred CCeEEEEEECCCCc-eEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 386 PNVTQVLVRFPNGE-RKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 386 ~~~~~i~iRlP~G~-r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
++.++|.|+..+|+ .+.-+...+++++.|++........+...+.|+-. -+.+.. +.|.+++|+..+.+|.|
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd--G~~l~~---~~Tp~~l~medgD~Idv 77 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD--GTKLSG---KELPADLGLESGDLIEV 77 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET--TEECCS---CCCHHHHTCCTTCEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC--CEEcCC---CCCHHHcCCCCCCEEEE
Confidence 45789999999996 89999999999999998776554445556666543 334433 56999999999888876
No 244
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=91.74 E-value=0.032 Score=47.54 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.|.|+..+|+.+.-.+..++||.+|..-|......++....|+ |..+.+. .+.||.+.|+.++++|+|-
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~---D~~tL~~~~I~~gsti~l~ 70 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLSDYNIQKESTLHLV 70 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE--ECCEECC---CCCchhhhccCCCCEEEEE
Confidence 4678889999888899999999999999988766556666665 5556664 2679999999999888763
No 245
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=91.68 E-value=1.2 Score=37.64 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=52.9
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhc------CCC--CCcCeEEEeCCCCcccCCCCccCcccccCCCCC
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSL------GCL--EVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQ 457 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~------~~~--~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~ 457 (465)
...+.|.||+.+|+++.-.+..++||.+|-.-|... ... .+....|+- --|.+.+ +.||.+.++..+
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy--~GK~LeD---~~TL~~y~I~~~ 89 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY--QGRFLHG---NVTLGALKLPFG 89 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES--SSSEEES---SCBTGGGCCCTT
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE--CCcCCCC---CCcHHHcCCCCC
Confidence 456899999999999999999999999999999972 222 245566654 3566743 679999999866
Q ss_pred e
Q 012346 458 A 458 (465)
Q Consensus 458 ~ 458 (465)
.
T Consensus 90 ~ 90 (125)
T 2gow_A 90 K 90 (125)
T ss_dssp S
T ss_pred C
Confidence 5
No 246
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=91.66 E-value=0.73 Score=46.06 Aligned_cols=101 Identities=10% Similarity=0.098 Sum_probs=71.2
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh------ccceEeecccCchHHHHHHHhCCCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN------ENFVSWGGSIRASEGFKMSNSLKAS 244 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~------~~fv~w~~~v~~~Eg~~va~~l~~~ 244 (465)
-..+|.+++. ..+++||+++.+.+..|..+...+ ..+.+.++ .++.+..+|.+.. ..+++.|++.
T Consensus 11 ~~~~f~~~~~----~~~~vlV~F~a~wC~~C~~~~p~~---~~~a~~~~~~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~ 81 (382)
T 2r2j_A 11 DTENIDEILN----NADVALVNFYADWCRFSQMLHPIF---EEASDVIKEEFPNENQVVFARVDCDQH--SDIAQRYRIS 81 (382)
T ss_dssp CTTTHHHHHH----HCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTCC---CCEEEEEEETTTC--HHHHHHTTCC
T ss_pred CHHHHHHHHh----cCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHHhhcCCCCceEEEEEECCcc--HHHHHhcCCC
Confidence 4456777663 578999999999987777765432 34444452 2467777776543 4578899999
Q ss_pred CCCcEEEEecCCCcceeeEE-eeecCCChHHHHHHHHHHHHh
Q 012346 245 RYPFCAVVMPAANQRIALLQ-QVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 245 ~~P~i~ii~~~~~~~~~vl~-~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.||.+.++.. |. ++. ...|..+.+.+++.+...+..
T Consensus 82 ~~Pt~~~f~~--G~---~~~~~~~G~~~~~~l~~~i~~~~~~ 118 (382)
T 2r2j_A 82 KYPTLKLFRN--GM---MMKREYRGQRSVKALADYIRQQKSD 118 (382)
T ss_dssp EESEEEEEET--TE---EEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred cCCEEEEEeC--Cc---EeeeeecCcchHHHHHHHHHHhccC
Confidence 9999988753 52 233 367999999999988877643
No 247
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=91.50 E-value=0.84 Score=38.25 Aligned_cols=77 Identities=10% Similarity=0.055 Sum_probs=58.0
Q ss_pred CeEEEEEECCCCc-eEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCC-CCccc-CCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGE-RKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNF-PRVVY-STDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~-r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~f-Pr~~~-~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+.++|.|+..++. ...+++..++||.+|..-|......++..-.|+-.- ..+.+ .-.+.+.||.+.|+.++.+|+|.
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4688888877664 689999999999999999998776667777776532 11222 11123789999999999999875
No 248
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=91.48 E-value=1.2 Score=37.71 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=49.7
Q ss_pred CeEEEEEECCCCceE-EEEecCCCcHHHHHHHHHhcC-----CCCC--cCeEEEeCCCCcccCCCCccCcccccCCCCC
Q 012346 387 NVTQVLVRFPNGERK-ERRFHSTAVVQLLYDYVDSLG-----CLEV--QNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQ 457 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~-~rrF~~~~tl~~l~~fv~~~~-----~~~~--~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~ 457 (465)
+...|.||+.+|+.+ .-.|..++||.+|-.-|...- ..++ ..-.|+-. -|.+.+ +.||.+.++..+
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~--GK~LeD---~~TLsdy~I~~~ 88 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA--GKVLEN---SKTVKDYRSPVS 88 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET--TEECCT---TSBGGGGSCCTT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC--CeECcC---CCcHHHcCCCcC
Confidence 678999999999887 689999999999999995421 1222 34556543 566643 679999999866
No 249
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=91.42 E-value=0.35 Score=48.61 Aligned_cols=70 Identities=9% Similarity=0.240 Sum_probs=56.2
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhc---CCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSL---GCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASL 460 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~---~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L 460 (465)
....+|.||..+|+.+.-.+..++||.+|...|... ..+.....+|+ |-.|.+.+ ++||.+.||..+.+|
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi--y~GK~L~D---~~tL~dygI~~gstI 77 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSD---DVPIRDYRIDEKNFV 77 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE--SSSSEECS---SSBTTTTCCCTTSCE
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE--ECCeecCC---cCCHHHcCCCCCCEE
Confidence 345789999999999988999999999999999983 33455667776 56777753 679999999988877
No 250
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=91.39 E-value=0.52 Score=40.49 Aligned_cols=98 Identities=14% Similarity=0.237 Sum_probs=53.4
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCC--CCCchHHHhhcCCCHHHHHHhh--ccce--EeecccCchHHHHHHHhCCCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPD--HPDTPAFCEGTLCNEVLAAFVN--ENFV--SWGGSIRASEGFKMSNSLKAS 244 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~--~~~s~~f~r~~l~~~~v~~~l~--~~fv--~w~~~v~~~Eg~~va~~l~~~ 244 (465)
-..+|++.+.. .+..+|++..+. +..|..+. |.+.++.+ .++. |...|++ +.-.+++.|++.
T Consensus 23 ~~~~f~~~i~~----~~~~vv~f~~~~~~C~~C~~l~------P~l~~la~~~~~v~~~~~~Vd~d--~~~~la~~~~V~ 90 (142)
T 2es7_A 23 EASTVDDWIKR----VGDGVILLSSDPRRTPEVSDNP------VMIAELLREFPQFDWQVAVADLE--QSEAIGDRFNVR 90 (142)
T ss_dssp CCC------------CCSEEEEECCCSCC----CCHH------HHHHHHHHTCTTSCCEEEEECHH--HHHHHHHTTTCC
T ss_pred ccccHHHHHHh----CCCEEEEEECCCCCCccHHHHH------HHHHHHHHHhcccceeEEEEECC--CCHHHHHhcCCC
Confidence 44667777652 223555665432 33444332 33444433 3566 7777764 455688999999
Q ss_pred CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 245 ~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.+|+++++- .|. ++.++.|..+.+++.+.|...+..
T Consensus 91 ~iPT~~~fk--~G~---~v~~~~G~~~~~~l~~~i~~~l~~ 126 (142)
T 2es7_A 91 RFPATLVFT--DGK---LRGALSGIHPWAELLTLMRSIVDT 126 (142)
T ss_dssp SSSEEEEES--CC-------CEESCCCHHHHHHHHHHHHC-
T ss_pred cCCeEEEEe--CCE---EEEEEeCCCCHHHHHHHHHHHhcc
Confidence 999999983 353 567888999998888888776643
No 251
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=91.31 E-value=1.4 Score=34.90 Aligned_cols=72 Identities=7% Similarity=-0.007 Sum_probs=56.7
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
+.++|.|+..+|+.+.-+...++++..|++-.......++..+.|+-. -+.+.. +.|.+++|+..+.+|-|-
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd--G~~l~~---~~Tp~dl~medgD~Idv~ 75 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--GQPINE---TDTPAQLEMEDEDTIDVF 75 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET--TEECCT---TCCTTTTTCCTTEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC--CEEcCC---CCCHHHcCCCCCCEEEEE
Confidence 468899999999999999999999999998877665555667776543 444433 569999999998887664
No 252
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=90.97 E-value=1 Score=35.94 Aligned_cols=73 Identities=7% Similarity=-0.011 Sum_probs=56.8
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
++.++|.|+..+|+.+.-+...++++..|++-.......++..+.|+-. -+.+.. +.|++++++..+.+|.|-
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd--G~~l~~---~~Tp~dl~medgD~Idv~ 77 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--GQPINE---TDTPAQLEMEDEDTIDVF 77 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET--TEECCT---TCCTTTTTCCTTCEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC--CEEcCC---CCCHHHcCCCCCCEEEEE
Confidence 3568899999999999999999999999998876655555666776543 444543 569999999999888764
No 253
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.89 E-value=0.27 Score=36.59 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=35.1
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCC-CHHHHHhhhhCCCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDW-DLELAISSFTSSNP 46 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W-~le~A~~~~~~~~~ 46 (465)
.++|.|++++ |++. +.|+..|..++| |+|.|+.-.|....
T Consensus 20 e~~i~~L~~M-GF~~-~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSM-GFPR-ARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHH-TCCH-HHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 4678999985 9988 899999999999 99999999998643
No 254
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=90.80 E-value=1.3 Score=33.32 Aligned_cols=69 Identities=7% Similarity=0.011 Sum_probs=53.3
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
++|.|+..+|+.+.-+...+++++.|++-.......++....|+-. .+.+.. +.|.+++|+..+.+|-|
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd--G~~l~~---~~Tp~~l~medgD~Idv 70 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--GQPINE---TDTPAQLEMEDEDTIDV 70 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET--TEECCT---TCCTTTTTCCTTEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEEC--CEEcCC---CCCHHHcCCCCCCEEEE
Confidence 5788999999999999999999999998776554445566666543 444433 56999999999888866
No 255
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=90.77 E-value=0.7 Score=36.73 Aligned_cols=70 Identities=24% Similarity=0.266 Sum_probs=57.1
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
-.|.|..|||.|.+-+-.++++|.+|..-+-....+++..|.|..+ ++.+ |.+..+.=.||.+++.|-+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~--~k~l---DLSlpfRlsgLpnnAkLELv 79 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ--RTVL---DLSLQWRFANLPNNAKLEMV 79 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET--TEEE---SSSCBHHHHCCCSSCEEEEE
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC--CEec---cccceeEecCCCCCCEEEEE
Confidence 3789999999999999999999999877665554457889998754 6666 34778999999999998764
No 256
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=90.74 E-value=0.2 Score=42.02 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=48.4
Q ss_pred HHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchH----------------------HH
Q 012346 180 QRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASE----------------------GF 235 (465)
Q Consensus 180 ~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~E----------------------g~ 235 (465)
..+.-.+|++||++..+.+..|......+ ..+.+-+. .++.+...++++.+ ..
T Consensus 22 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (144)
T 1o73_A 22 SLGSLVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVS 98 (144)
T ss_dssp CSGGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHH
T ss_pred cHHHhCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHH
Confidence 33445689999999987665555544322 12233333 36667776666532 45
Q ss_pred HHHHhCCCCCCCcEEEEecCCC
Q 012346 236 KMSNSLKASRYPFCAVVMPAAN 257 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~ 257 (465)
.+++.|++..+|.++||++..|
T Consensus 99 ~~~~~~~v~~~Pt~~lid~~~G 120 (144)
T 1o73_A 99 ELGKTFGVESIPTLITINADTG 120 (144)
T ss_dssp HHHHHHTCCSSSEEEEEETTTC
T ss_pred HHHHHcCCCCCCEEEEEECCCC
Confidence 6788999999999999993235
No 257
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=90.46 E-value=0.84 Score=35.84 Aligned_cols=73 Identities=11% Similarity=-0.029 Sum_probs=53.4
Q ss_pred eEEEEEECC--CCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeC-----CCCcccCCCCccCcccccCCCCCeeE
Q 012346 388 VTQVLVRFP--NGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSN-----FPRVVYSTDKFSLSLKEAGLHPQASL 460 (465)
Q Consensus 388 ~~~i~iRlP--~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~-----fPr~~~~~~~~~~TL~e~gL~p~~~L 460 (465)
+++|.|.-. .+.-..+||..++||.+|-.-|+.....++..-.|+-. |..+.+ +.+.||.+.|+.++.+|
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l---~d~~tL~~Y~i~~g~~i 78 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNM---ANDKQLGYYQCRDEFVI 78 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSC---CTTSBGGGGTCCTTCEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEc---CCCCCHHHCCCCCCCEE
Confidence 456666533 33346899999999999999999887777777777632 222222 34789999999999999
Q ss_pred EEE
Q 012346 461 FVE 463 (465)
Q Consensus 461 ~ve 463 (465)
+|-
T Consensus 79 hlv 81 (86)
T 4b6w_A 79 HVV 81 (86)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 258
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=90.13 E-value=0.67 Score=38.95 Aligned_cols=73 Identities=18% Similarity=0.123 Sum_probs=47.1
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchH----------------------HHHH
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASE----------------------GFKM 237 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~E----------------------g~~v 237 (465)
+.-.+|+++|++..+.+..|..+...+ ..+.+-+. .++.+..+++++.+ ...+
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (146)
T 1o8x_A 24 KSLAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKL 100 (146)
T ss_dssp GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHH
T ss_pred HHhCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHH
Confidence 334578999999987665555544322 22333333 36666666666422 4578
Q ss_pred HHhCCCCCCCcEEEEecCCC
Q 012346 238 SNSLKASRYPFCAVVMPAAN 257 (465)
Q Consensus 238 a~~l~~~~~P~i~ii~~~~~ 257 (465)
++.|++..+|.++||++..|
T Consensus 101 ~~~~~v~~~Pt~~lid~~~G 120 (146)
T 1o8x_A 101 SKHFNVESIPTLIGVDADSG 120 (146)
T ss_dssp HHHTTCCSSSEEEEEETTTC
T ss_pred HHHhCCCCCCEEEEEECCCC
Confidence 88999999999999993235
No 259
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=90.12 E-value=2.2 Score=38.75 Aligned_cols=112 Identities=9% Similarity=0.047 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhCCCCCCccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccC
Q 012346 153 MEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIR 230 (465)
Q Consensus 153 ~~f~~~~~~~yg~~~p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~ 230 (465)
..|+..+...-|. ...+-..+|...+ ....++++|++.++.+..|..+.. .+.++-. .++.+...|++
T Consensus 107 ~~~~~~~~~~~~~-~~~l~~~~~~~~~---~~~~~~~~v~F~a~wC~~C~~~~~------~~~~~~~~~~~v~~~~vd~~ 176 (229)
T 2ywm_A 107 TTLINGIFHVSQR-KPQLSEKTLELLQ---VVDIPIEIWVFVTTSCGYCPSAAV------MAWDFALANDYITSKVIDAS 176 (229)
T ss_dssp HHHHHHHHHHHTT-CCSCCHHHHHHHT---TCCSCEEEEEEECTTCTTHHHHHH------HHHHHHHHCTTEEEEEEEGG
T ss_pred HHHHHHHHhccCC-ccCCCHHHHHHHH---hcCCCeEEEEEECCCCcchHHHHH------HHHHHHHHCCCeEEEEEECC
Confidence 4566555433332 1233333444332 344566688999999888877762 3333333 25666667665
Q ss_pred chHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 231 ASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 231 ~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.. ..+++.|++..+|++++ .|. +.+..|..+.+++.+.|...+.
T Consensus 177 ~~--~~l~~~~~v~~~Pt~~~----~G~----~~~~~G~~~~~~l~~~l~~~~~ 220 (229)
T 2ywm_A 177 EN--QDLAEQFQVVGVPKIVI----NKG----VAEFVGAQPENAFLGYIMAVYE 220 (229)
T ss_dssp GC--HHHHHHTTCCSSSEEEE----GGG----TEEEESCCCHHHHHHHHHHHHH
T ss_pred CC--HHHHHHcCCcccCEEEE----CCE----EEEeeCCCCHHHHHHHHHHHhh
Confidence 43 35788899999999888 243 2457799999988888877664
No 260
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=89.98 E-value=0.76 Score=38.44 Aligned_cols=73 Identities=16% Similarity=0.056 Sum_probs=47.3
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCch----------------------HHHHH
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRAS----------------------EGFKM 237 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~----------------------Eg~~v 237 (465)
+.-.+|++||++..+.+..|..+...+ ..+.+-+. .++.+.++++++. ....+
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (144)
T 1i5g_A 24 PSLAGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFL 100 (144)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHH
Confidence 334578999999987665555544322 22333333 3666777766642 24578
Q ss_pred HHhCCCCCCCcEEEEecCCC
Q 012346 238 SNSLKASRYPFCAVVMPAAN 257 (465)
Q Consensus 238 a~~l~~~~~P~i~ii~~~~~ 257 (465)
++.|++..+|.++||++..|
T Consensus 101 ~~~~~v~~~P~~~lid~~~G 120 (144)
T 1i5g_A 101 TTGFDVKSIPTLVGVEADSG 120 (144)
T ss_dssp HHHTTCCSSSEEEEEETTTC
T ss_pred HHHcCCCCCCEEEEEECCCC
Confidence 88999999999999993235
No 261
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=89.97 E-value=1.8 Score=34.41 Aligned_cols=73 Identities=7% Similarity=-0.011 Sum_probs=56.6
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...++|.|+..+|+.+.-+...++++..|++............+.|+-. -+.+.. +.|..++++..+.+|.|-
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd--G~~l~~---~~Tp~dl~medgD~Idv~ 87 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--GQPINE---TDTPAQLEMEDEDTIDVF 87 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET--TEECCT---TCCTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEEC--CEEcCC---CCCHHHcCCCCCCEEEEE
Confidence 4578999999999999999999999999998776655445566666543 444433 569999999999888764
No 262
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.97 E-value=0.24 Score=38.91 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=35.8
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~ 45 (465)
..++|.|++++ |++. +.|+..|..++||+|.|+.-.|.+.
T Consensus 29 ~e~~i~~L~~M-GF~~-~~a~~AL~~t~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 29 DEAALRQLTEM-GFPE-NRATKALQLNHMSVPQAMEWLIEHA 68 (83)
T ss_dssp CHHHHHHHHHH-TCCH-HHHHHHHHHTTSCHHHHHHHHHHGG
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 45789999995 9998 8999999999999999999998754
No 263
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.88 E-value=1.1 Score=36.41 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=53.9
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
....+.+++ +|+.+.-.+..++|+.+|..-|......++..-.| ..||...+. | +.+|.+.||.++.+|++-
T Consensus 8 ~m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkL-i~~~~gkL~--D-~~tLs~~~I~~gstL~lv 79 (100)
T 2dzm_A 8 RMLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLL-KGWKTGDVE--D-STVLKSLHLPKNNSLYVL 79 (100)
T ss_dssp CEEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCE-ECCSSSCCC--T-TSBHHHHCCCSEEEEEEC
T ss_pred ceEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEE-EccCCCCCC--C-cCCHHHcCCCCCCEEEEE
Confidence 356677777 67778888999999999999998876666665556 334443442 2 789999999999888763
No 264
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=89.75 E-value=4 Score=37.31 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=67.4
Q ss_pred CCCccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCC--
Q 012346 167 KPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKAS-- 244 (465)
Q Consensus 167 ~p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~-- 244 (465)
.|.+-.-+...+-.......+++++++.++.+.++..+...+ ..+.+-.+.++.|-..|.+..+.-.+++.|+++
T Consensus 112 ~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~---~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~ 188 (227)
T 4f9z_D 112 LHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRY---QKAAKLFQGKILFILVDSGMKENGKVISFFKLKES 188 (227)
T ss_dssp CCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHH---HHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGG
T ss_pred CCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHH---HHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcc
Confidence 465555555555555555667666667676556666655322 234444445555555665544545677889987
Q ss_pred CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 245 ~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.+|.++|+....+.+... -.|..+++.+..-++.+++
T Consensus 189 ~~P~~~i~~~~~~~ky~~---~~~~~t~~~i~~Fv~~~~~ 225 (227)
T 4f9z_D 189 QLPALAIYQTLDDEWDTL---PTAEVSVEHVQNFCDGFLS 225 (227)
T ss_dssp GCSEEEEEESSSCCEEEE---TTCCCCHHHHHHHHHHHHT
T ss_pred cCCEEEEEECCCCccccC---CcCCCCHHHHHHHHHHHhC
Confidence 899999998753322211 1256788877776666553
No 265
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.62 E-value=2.9 Score=34.77 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=51.8
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhc------CC--CCCcCeEEEeCCCCcccCCCCccCcccccCCCCC
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSL------GC--LEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQ 457 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~------~~--~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~ 457 (465)
+.+.|.||+.+|+++.-.+..++||.+|-.-|... .. .++....|+-. -|.+.+ +.||.+.++..+
T Consensus 15 ~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~--GK~LeD---~~TL~~y~I~~~ 88 (116)
T 1wgh_A 15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ--GRFLHG---NVTLGALKLPFG 88 (116)
T ss_dssp SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET--TEEECS---SCBTTTTTCCSS
T ss_pred CeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC--CcCCCC---CCcHHHcCCCCC
Confidence 46889999999999999999999999999999973 12 13556667643 566743 679999998755
No 266
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=89.62 E-value=1.6 Score=37.38 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=29.5
Q ss_pred HHHHhCCCCC----CCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 236 KMSNSLKASR----YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 236 ~va~~l~~~~----~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.+++.|++.. +|.++||++. | .++.+..|..+.+..+..+...+
T Consensus 97 ~~~~~~~v~~~~~~~P~~~lid~~-G---~i~~~~~g~~~~~~~~~~il~~l 144 (161)
T 3drn_A 97 KIRELYGAKGFILPARITFVIDKK-G---IIRHIYNSQMNPANHVNEALKAL 144 (161)
T ss_dssp HHHHHTTCCCSSSCCCEEEEECTT-S---BEEEEEECSSCTTHHHHHHHHHH
T ss_pred HHHHHcCCCCcCcccceEEEECCC-C---EEEEEEecCCCCCcCHHHHHHHH
Confidence 5677899888 9999999973 5 35666677555554444444444
No 267
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=89.49 E-value=0.88 Score=40.16 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=67.4
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh---ccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~---~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
+|++++.. ...|+.+|.+..+.+..|.... |-+-++-. +..+|+.+|++.. -.++..|++...|+++
T Consensus 31 ~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~------PvleelA~e~~~~v~f~kVDVDe~--~e~a~~y~V~siPT~~ 100 (160)
T 2av4_A 31 AVDQAIVN--EDERLVCIRFGHDYDPDCMKMD------ELLYKVADDIKNFCVIYLVDITEV--PDFNTMYELYDPVSVM 100 (160)
T ss_dssp HHHHHHHH--CSSSEEEEEEECTTSHHHHHHH------HHHHHHHHHHTTTEEEEEEETTTC--CTTTTTTTCCSSEEEE
T ss_pred HHHHHHHh--cCCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCCcEEEEEECCCC--HHHHHHcCCCCCCEEE
Confidence 35555522 4679999999998887765543 33333333 3478999999753 3478899999999998
Q ss_pred EEecCCCcceeeEE-------eeecCCC-hHHHHHHHHHHHH
Q 012346 251 VVMPAANQRIALLQ-------QVEGPKS-PEEMLMILQKVIE 284 (465)
Q Consensus 251 ii~~~~~~~~~vl~-------~i~G~~~-~~~~~~~L~~~~~ 284 (465)
++-. |..+. +. ++.|..+ .++|...|...+.
T Consensus 101 fFk~--G~~v~-vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r 139 (160)
T 2av4_A 101 FFYR--NKHMM-IDLGTGNNNKINWPMNNKQEFIDIVETIFR 139 (160)
T ss_dssp EEET--TEEEE-EECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred EEEC--CEEEE-EecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence 8764 53221 25 7889877 8888888876653
No 268
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=89.47 E-value=0.067 Score=47.07 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.|.||..+|+.+.-.+..++||.+|-.-|......++....|+ |..+.+.+ +.||.+.||.++++|+|-
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D---~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLED---GRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE--ECCEEccc---cCcHHHcCCCCCCEEEEE
Confidence 4778999999888889999999999999988766556666665 45566642 679999999999888763
No 269
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=89.39 E-value=0.97 Score=40.40 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=53.8
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchH--------------------------HHHH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE--------------------------GFKM 237 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~E--------------------------g~~v 237 (465)
.+|+++|++. ...+..|......+ ..-..+|-+.++.+.+.++++++ ...+
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 109 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAF--DKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSI 109 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHH
T ss_pred CCCcEEEEEECCCCCCchHHHHHHH--HHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHH
Confidence 4678888888 66665555443221 01111122235666666665433 2256
Q ss_pred HHhCCCC-----CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHH
Q 012346 238 SNSLKAS-----RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (465)
Q Consensus 238 a~~l~~~-----~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~ 282 (465)
++.|++. .+|..+||++. | .++.+..|.. ++++++..|...
T Consensus 110 ~~~~~v~~~~g~~~P~~~lid~~-G---~i~~~~~g~~~~~~~~~~l~~~l~~l 159 (198)
T 1zof_A 110 SRDYDVLFEEAIALRGAFLIDKN-M---KVRHAVINDLPLGRNADEMLRMVDAL 159 (198)
T ss_dssp HHHTTCEETTTEECEEEEEEETT-T---EEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred HHHhCCcccCCcccceEEEECCC-C---EEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 7788888 89999999973 5 3556666654 456666666543
No 270
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=89.36 E-value=0.86 Score=39.62 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=43.9
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHH----------------------HHHHHh
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEG----------------------FKMSNS 240 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg----------------------~~va~~ 240 (465)
.+|++||++..+.+..|..+...+ ..+.+-+.+ ++.+.+.++++... ..+++.
T Consensus 47 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (165)
T 3s9f_A 47 SGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKK 123 (165)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHH
Confidence 468888888877665554443222 122222332 55566655554422 678899
Q ss_pred CCCCCCCcEEEEecCCC
Q 012346 241 LKASRYPFCAVVMPAAN 257 (465)
Q Consensus 241 l~~~~~P~i~ii~~~~~ 257 (465)
|++..+|.++||++.+|
T Consensus 124 ~~v~~~Pt~~lid~~~G 140 (165)
T 3s9f_A 124 YSVESIPTLIGLNADTG 140 (165)
T ss_dssp TTCCSSSEEEEEETTTC
T ss_pred cCCCCCCEEEEEeCCCC
Confidence 99999999999997325
No 271
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=89.34 E-value=1.3 Score=39.45 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=31.0
Q ss_pred HHHHhCCCC-----CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHHH
Q 012346 236 KMSNSLKAS-----RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKVI 283 (465)
Q Consensus 236 ~va~~l~~~-----~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~~ 283 (465)
.+++.|++. .+|.++||++. | .++.+..|.. ++++++..|....
T Consensus 117 ~~~~~~~v~~~~g~~~P~~~lid~~-G---~i~~~~~g~~~~~~~~~~l~~~l~~l~ 169 (195)
T 2bmx_A 117 ELSQAAGVLNADGVADRVTFIVDPN-N---EIQFVSATAGSVGRNVDEVLRVLDALQ 169 (195)
T ss_dssp HHHHHHTCBCTTSSBCEEEEEECTT-S---BEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCccceEEEEcCC-C---eEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 456778888 89999999973 5 3555665654 5777777776554
No 272
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=89.27 E-value=0.55 Score=48.26 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=70.0
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..+|.+++ ....|.+||+++.+.+..|..+...+ ..+.+.+.. ++++...|++.. .++..|++..||++
T Consensus 359 ~~~~~~~~---~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~v~~~~id~~~~---~~~~~~~v~~~Pt~ 429 (481)
T 3f8u_A 359 AENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLSKDPNIVIAKMDATAN---DVPSPYEVRGFPTI 429 (481)
T ss_dssp TTTHHHHH---TCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTSS---CCCTTCCCCSSSEE
T ss_pred ccCHHHHh---hcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhccCCCEEEEEEECCch---hhHhhCCCcccCEE
Confidence 34566554 44689999999999887777765433 344444544 688888887665 46678999999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
.++.. |.... ..+..|..+.+++++.|....
T Consensus 430 ~~~~~--~~~~~-~~~~~G~~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 430 YFSPA--NKKLN-PKKYEGGRELSDFISYLQREA 460 (481)
T ss_dssp EEECT--TCTTS-CEECCSCCSHHHHHHHHHHHC
T ss_pred EEEeC--CCeEe-eeEeCCCCCHHHHHHHHHHhc
Confidence 88875 32221 345678899999888877654
No 273
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=89.22 E-value=1.2 Score=38.69 Aligned_cols=41 Identities=5% Similarity=0.038 Sum_probs=31.7
Q ss_pred hCCCCCCC------cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 240 SLKASRYP------FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 240 ~l~~~~~P------~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.|++..+| ..+||++. | .++.+..|..+++++.+.|...+.
T Consensus 122 ~~~v~~~P~i~~~~~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~~ll~ 168 (171)
T 3cmi_A 122 KSGMLGLRGIKWNFEKFLVDKK-G---KVYERYSSLTKPSSLSETIEELLK 168 (171)
T ss_dssp SCCSSSCCSCCSTTCEEEECSS-S---CEEEEECTTSCGGGGHHHHHHHHT
T ss_pred cCCcCCCCcccccceEEEECCC-C---CEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46778889 89999873 5 356777888899888888877664
No 274
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=89.21 E-value=2.1 Score=37.70 Aligned_cols=92 Identities=9% Similarity=-0.060 Sum_probs=54.9
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCchH-----------------------HHHHHH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASE-----------------------GFKMSN 239 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~E-----------------------g~~va~ 239 (465)
.+|+++|++. ...+..|......+ ..+.+-+. .++.+++.++++.+ ...+++
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELEDV---QKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISR 106 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHH---HHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHH
T ss_pred CCCCEEEEEECCCCCcchHHHHHHH---HHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHH
Confidence 4577888877 66666555443221 11222222 25666666665432 134667
Q ss_pred hCCCC------CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHHH
Q 012346 240 SLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKVI 283 (465)
Q Consensus 240 ~l~~~------~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~~ 283 (465)
.|++. .+|.++||++. | .++.+..|.. +.++++..|....
T Consensus 107 ~~~v~~~~~g~~~P~~~lid~~-G---~i~~~~~g~~~~~~~~~~l~~~l~~l~ 156 (187)
T 1we0_A 107 QFDVLNEETGLADRGTFIIDPD-G---VIQAIEINADGIGRDASTLINKVKAAQ 156 (187)
T ss_dssp HTTCEETTTTEECEEEEEECTT-S---BEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred HhCCCcCCCCceeeEEEEECCC-C---eEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 78887 89999999973 5 3555666654 6778877776544
No 275
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=89.20 E-value=1.5 Score=36.15 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=55.4
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
++.++|.|+..+|+.+..+...+++|..|++........++..+.|+- --+.+.. +.|.+++++..+.+|-|-
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF--dG~~L~~---~~Tp~dl~mEDgD~Idv~ 96 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF--DGTPIDE---TKTPEELGMEDDDVIDAM 96 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES--SSCBCCS---SSHHHHHHCSSEEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE--CCEEcCC---CCCHHHcCCCCCCEEEEE
Confidence 356899999999999999999999999998877655444555666653 3444433 569999999988887664
No 276
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=89.12 E-value=3.2 Score=34.28 Aligned_cols=90 Identities=10% Similarity=0.129 Sum_probs=65.3
Q ss_pred HHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh-ccceEeecccCchHH--HHHHHhCCCCC-CCcEEEEec
Q 012346 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEG--FKMSNSLKASR-YPFCAVVMP 254 (465)
Q Consensus 179 l~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~-~~fv~w~~~v~~~Eg--~~va~~l~~~~-~P~i~ii~~ 254 (465)
++...++.++.+|+.|+..+.-|.... +.+.++.+ .++-++-.||+.... -.++..|++.. -|.+.++-.
T Consensus 17 f~~ii~~~~~vvi~khatwCgpc~~~~------~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k~ 90 (112)
T 3iv4_A 17 FEQVIEENKYVFVLKHSETCPISANAY------DQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVN 90 (112)
T ss_dssp HHHHHHHCSEEEEEEECTTCHHHHHHH------HHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEET
T ss_pred HHHHHhcCCCEEEEEECCcCHhHHHHH------HHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEEC
Confidence 344444599999999998876666554 34444443 478888889886544 45899999995 999999974
Q ss_pred CCCcceeeEEeeecCCChHHHHHH
Q 012346 255 AANQRIALLQQVEGPKSPEEMLMI 278 (465)
Q Consensus 255 ~~~~~~~vl~~i~G~~~~~~~~~~ 278 (465)
|. .++....|.++.+.+...
T Consensus 91 --G~--~v~~~SH~~I~~~~l~~~ 110 (112)
T 3iv4_A 91 --GE--MVWNRDHGDINVSSLAQA 110 (112)
T ss_dssp --TE--EEEEEEGGGCSHHHHHHH
T ss_pred --CE--EEEEeeccccCHHHHHHh
Confidence 53 578878889998876543
No 277
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=89.02 E-value=1.2 Score=43.72 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=63.1
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhh------cCCCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCCCCCcEEEEecCC
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEG------TLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAA 256 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~------~l~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~ 256 (465)
.+.+++||+++.+.+. |..+.-. +| +.+.+.++. ++.+..+|++.. ..+++.|++..||++.++..
T Consensus 26 ~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~--~~~a~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~~~Pt~~~~~~-- 98 (350)
T 1sji_A 26 KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVL--ELVAQVLEHKDIGFVMVDAKKE--AKLAKKLGFDEEGSLYVLKG-- 98 (350)
T ss_dssp TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHH--HHHHHHGGGSSEEEEEEETTTT--HHHHHHHTCCSTTEEEEEET--
T ss_pred hhCCeEEEEEECCCCc-chhhCchhhhhhHHH--HHHHHHHhhcCcEEEEEeCCCC--HHHHHhcCCCccceEEEEEC--
Confidence 4578999999999876 6433211 02 245555655 577777777654 45788999999999999853
Q ss_pred CcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 257 NQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 257 ~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
|. .....|..+.+.+.+.+...+.
T Consensus 99 g~----~~~~~G~~~~~~l~~~i~~~~~ 122 (350)
T 1sji_A 99 DR----TIEFDGEFAADVLVEFLLDLIE 122 (350)
T ss_dssp TE----EEEECSCCCHHHHHHHHHTTSS
T ss_pred Cc----EEEecCCCCHHHHHHHHHHhcC
Confidence 53 2367799999998888776553
No 278
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=88.95 E-value=2.7 Score=34.33 Aligned_cols=72 Identities=6% Similarity=0.025 Sum_probs=54.9
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
++.++|.|+. +|+.+.-+...+++|+.|++............+.|+-. -+.+.. +.|.+++|+..+.+|-|-
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd--G~rl~~---~~Tp~dl~medgD~Idv~ 100 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD--GIRIQA---DQTPEDLDMEDNDIIEAH 100 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET--TEECCT---TCCTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC--CeEcCC---CCCHHHcCCCCCCEEEEE
Confidence 3568888998 99999999999999999998776554445566666543 344432 569999999999888764
No 279
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.85 E-value=1.7 Score=33.94 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=55.5
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCC
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLH 455 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~ 455 (465)
..++|+.|.++--...+-|-+..-+|++|+.-|-..-.+++..+.|..++--. ...|.++||.|+||.
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~--e~LdLskSLndlgir 75 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQ--EPLDLTKSLNDLGLR 75 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCC--CBCCTTSCHHHHTCS
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCC--cccchhcchhhhhhh
Confidence 36899999999998999999999999999999876666788999987764322 223568999999986
No 280
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=88.84 E-value=0.81 Score=34.32 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=34.5
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
+++|.|+.++ |+.|.+.++..|..+++|++.||...|.+..
T Consensus 20 ~~ql~qL~~M-GF~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 20 SKEMECLQAM-GFVNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4688898874 6777567799999999999999999998654
No 281
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=88.80 E-value=0.62 Score=34.06 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=37.0
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~~ 47 (465)
-+++|.+++++.-.=|.+..+.+|+++++|++.||...+....+
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 45789999999766666789999999999999999999875543
No 282
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=88.74 E-value=2.8 Score=37.08 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=31.3
Q ss_pred CCCCCCC------cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 241 LKASRYP------FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 241 l~~~~~P------~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
|++..+| ..+||++. | .++.+..|..+++++...|...+.+
T Consensus 140 ~~v~~~P~i~~~~~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~~ll~~ 186 (190)
T 2vup_A 140 PGILKTKAIKWNFTSFLIDRD-G---VPVERFSPGASVKDIEKKLIPLLES 186 (190)
T ss_dssp CCGGGCCSCCSTTCEEEECTT-S---CEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred CCcCCCccccccceEEEECCC-C---cEEEEECCCCCHHHHHHHHHHHHhh
Confidence 4666788 88999873 5 3567778988999998888877754
No 283
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=88.70 E-value=0.54 Score=41.50 Aligned_cols=47 Identities=9% Similarity=0.117 Sum_probs=32.6
Q ss_pred HHHHhCCCCCCCcEEEEecCCCcceeeEEe--------eecCCChHHHHHHHHHHHHhh
Q 012346 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQ--------VEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~~~~~vl~~--------i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.+++.|++..+|.++||++. |. ++.+ ..|..+.+++...|...+...
T Consensus 107 ~~~~~~~v~~~P~~~lid~~-G~---i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 161 (188)
T 2cvb_A 107 EVAKAYRALRTPEVFLFDER-RL---LRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE 161 (188)
T ss_dssp HHHHHTTCCEESEEEEECTT-CB---EEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred hHHHHcCCCCCCeEEEECCC-Cc---EEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence 46778999999999999873 52 2333 123346788888888777543
No 284
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=88.67 E-value=2.2 Score=34.71 Aligned_cols=73 Identities=7% Similarity=-0.028 Sum_probs=55.1
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
...++|.|+..+|+.+.-+...+++|..|++............+.|+-. -+.+. .+.|..++++..+.+|.|-
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd--G~~l~---~~~Tp~dl~medgD~Idv~ 94 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD--GQPIN---ETDTPAQLEMEDEDTIDVF 94 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS--SSBCC---TTSCTTTTTCCTTEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC--CEEcC---CCCCHHHcCCCCCCEEEEE
Confidence 3568899999999999999999999999998776554444555555432 33343 2569999999999888764
No 285
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=88.67 E-value=0.34 Score=39.94 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=45.8
Q ss_pred cCcEEEEEEeCC-------CCCCchHHHhhcCCCHHHHHHhh---ccceEeecccCchH-----HHHHHHhCCCCCCCcE
Q 012346 185 VFKLLFVYLHSP-------DHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASE-----GFKMSNSLKASRYPFC 249 (465)
Q Consensus 185 e~K~LlVyL~~~-------~~~~s~~f~r~~l~~~~v~~~l~---~~fv~w~~~v~~~E-----g~~va~~l~~~~~P~i 249 (465)
..|+++|++.++ .+..|..+. +.+.++.+ .++.|..+++++.. ...++..|++..+|.+
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt~ 96 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAE------PVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTL 96 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHHHH------HHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEE
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHHhh------HHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCCCCeeCEE
Confidence 489999999998 666665554 34444444 36888888885322 2346777999999999
Q ss_pred EEEec
Q 012346 250 AVVMP 254 (465)
Q Consensus 250 ~ii~~ 254 (465)
+++..
T Consensus 97 ~~~~~ 101 (123)
T 1wou_A 97 LKYGT 101 (123)
T ss_dssp EETTS
T ss_pred EEEcC
Confidence 98875
No 286
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=88.10 E-value=2.5 Score=41.91 Aligned_cols=102 Identities=14% Similarity=0.166 Sum_probs=70.1
Q ss_pred ccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcC----CCHHHHHHhhc-cceEeecccCchHHHHHHHhCCCC
Q 012346 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTL----CNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKAS 244 (465)
Q Consensus 170 f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l----~~~~v~~~l~~-~fv~w~~~v~~~Eg~~va~~l~~~ 244 (465)
.-..+|.+++ +..+++||+++.+.+..| .+|..+- .-+.+.+.++. ++.+..+|++.. ..+++.|++.
T Consensus 18 lt~~~f~~~i----~~~~~vlV~FyApWC~~~-~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~--~~l~~~~~V~ 90 (367)
T 3us3_A 18 VNAKNYKNVF----KKYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD--AAVAKKLGLT 90 (367)
T ss_dssp CCTTTHHHHH----HHCSEEEEEEECCCCSSH-HHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTT--HHHHHHHTCC
T ss_pred CCHHHHHHHH----hhCCeEEEEEECCCchhH-HHhhhhccccHHHHHHHHHhhcCCceEEEEeCccc--HHHHHHcCCC
Confidence 3556788877 347899999999988553 4444220 11234444544 577777776643 4689999999
Q ss_pred CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 245 ~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.||++.++.. |. .+ ...|..+.+.+++.+...+.
T Consensus 91 ~~PTl~~f~~--G~---~~-~y~G~~~~~~i~~~i~~~~~ 124 (367)
T 3us3_A 91 EEDSIYVFKE--DE---VI-EYDGEFSADTLVEFLLDVLE 124 (367)
T ss_dssp STTEEEEEET--TE---EE-ECCSCCSHHHHHHHHHHHHS
T ss_pred cCceEEEEEC--Cc---EE-EeCCCCCHHHHHHHHHHhcC
Confidence 9999999874 53 22 56799999999988876654
No 287
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=87.77 E-value=2.7 Score=37.97 Aligned_cols=91 Identities=10% Similarity=0.140 Sum_probs=60.5
Q ss_pred cCcEEEEEEeCC-CCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeE
Q 012346 185 VFKLLFVYLHSP-DHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (465)
Q Consensus 185 e~K~LlVyL~~~-~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl 263 (465)
+.+..+|++..+ .+..|..+.. +| +.+.+. ..++.+...|++++|...++..|++..+|.+.++.. |.. +.
T Consensus 21 ~~~v~lv~f~~~~~C~~C~~~~~-~~--~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~--g~~--~~ 92 (226)
T 1a8l_A 21 VNPVKLIVFVRKDHCQYCDQLKQ-LV--QELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQD--GKD--FG 92 (226)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHH-HH--HHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEET--TBC--CS
T ss_pred CCCeEEEEEecCCCCchhHHHHH-HH--HHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcC--Cce--ee
Confidence 456778999988 7777766542 22 112221 246777788888877888999999999999998853 321 12
Q ss_pred EeeecCCChHHHHHHHHHHH
Q 012346 264 QQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 264 ~~i~G~~~~~~~~~~L~~~~ 283 (465)
.+..|..+.+++...+...+
T Consensus 93 ~~~~G~~~~~~l~~~l~~~l 112 (226)
T 1a8l_A 93 VRYFGLPAGHEFAAFLEDIV 112 (226)
T ss_dssp EEEESCCCTTHHHHHHHHHH
T ss_pred EEEeccCcHHHHHHHHHHHH
Confidence 34557777777666655444
No 288
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.57 E-value=0.58 Score=32.36 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=32.7
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~ 43 (465)
..++|.|++++ |++. +.|+..|..++ |+|.|+.-.|.
T Consensus 9 ~~~~v~~L~~M-GF~~-~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 9 NQQQLQQLMDM-GFTR-EHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp CHHHHHHHHHH-HCCH-HHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcC-CHHHHHHHHHc
Confidence 46789999995 8888 89999999998 99999998775
No 289
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=87.56 E-value=0.25 Score=41.58 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=47.8
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc----cceEeecccCchH------------------------HHH
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE----NFVSWGGSIRASE------------------------GFK 236 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~----~fv~w~~~v~~~E------------------------g~~ 236 (465)
.+|++||++....+..|.... +.+.++.++ ++.+.+.+++... ...
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 104 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE 104 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSH
T ss_pred CCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchH
Confidence 468888888876554343332 334444432 4566665555321 125
Q ss_pred HHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 237 MSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 237 va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
+++.|++..+|..+||++. |. ++.+. .+.+++-+.|
T Consensus 105 ~~~~~~v~~~P~~~lid~~-G~---i~~~~---~~~~~l~~~l 140 (143)
T 4fo5_A 105 LYKKYDLRKGFKNFLINDE-GV---IIAAN---VTPEKLTEIL 140 (143)
T ss_dssp HHHHTTGGGCCCEEEECTT-SB---EEEES---CCHHHHHHHH
T ss_pred HHHHcCCCCCCcEEEECCC-CE---EEEcc---CCHHHHHHHH
Confidence 6778999999999999973 52 44442 3455554443
No 290
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=87.53 E-value=3.5 Score=35.08 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=27.6
Q ss_pred CCCC---cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 244 SRYP---FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 244 ~~~P---~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
..+| ..+||++. | .++.+..|..+++++...|...+.
T Consensus 129 ~~~p~~~~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~~ll~ 168 (170)
T 2p5q_A 129 DDIQWNFAKFLVNKD-G---QVVDRYYPTTSPLSLERDIKQLLE 168 (170)
T ss_dssp SCCCSTTCEEEECTT-S---CEEEEECTTSCGGGGHHHHHHHTT
T ss_pred CcccccccEEEECCC-C---CEEEeeCCCCCHHHHHHHHHHHhh
Confidence 5678 88999873 5 356677888888888888876653
No 291
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=87.45 E-value=1.9 Score=38.19 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=53.4
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHH--------------------------HHH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--------------------------FKM 237 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg--------------------------~~v 237 (465)
.+|+++|++. ...+..|......+ +.-..+|-..++.+.+.++++.+. ..+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l--~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 107 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIAL--DKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSI 107 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHHH--HHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHH
Confidence 4678888888 66666665443222 111112222356666666665431 246
Q ss_pred HHhCCCC-----CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHH
Q 012346 238 SNSLKAS-----RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (465)
Q Consensus 238 a~~l~~~-----~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~ 282 (465)
++.|++. .+|.++||++. | .++.+..|.. +.++++..|...
T Consensus 108 ~~~~gv~~~~g~~~P~~~liD~~-G---~i~~~~~g~~~~~~~~~~l~~~l~~l 157 (192)
T 2h01_A 108 ARSYDVLFNESVALRAFVLIDKQ-G---VVQHLLVNNLALGRSVDEILRLIDAL 157 (192)
T ss_dssp HHHTTCEETTTEECCEEEEECTT-S---BEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred HHHhCCcCcCCceeeEEEEEcCC-C---EEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 7788888 89999999974 4 2444555543 355666655543
No 292
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=87.31 E-value=0.57 Score=37.97 Aligned_cols=86 Identities=12% Similarity=0.012 Sum_probs=55.7
Q ss_pred HHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCch--HHHHHHHhCCCCCCCcEEEEec
Q 012346 177 DALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS--EGFKMSNSLKASRYPFCAVVMP 254 (465)
Q Consensus 177 eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~--Eg~~va~~l~~~~~P~i~ii~~ 254 (465)
+++..|+...|..+|++..+.+..|..+.. +| .+ +.+.+-...+++++. +...+++.|++..+|.+.|
T Consensus 3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p-~~-----~~-~a~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--- 72 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LF-----GA-AFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--- 72 (106)
T ss_dssp HHHHHHHHHHHHTCEEEECTTCHHHHHHHH-HH-----GG-GGGGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEE---
T ss_pred HhhHHHHhcCCCEEEEEECCCCHHHHHHHH-HH-----HH-HHHhCCEEEEecccccchhHHHHHHcCCeEeCEEEE---
Confidence 456666667777899999998877766642 22 11 223333444554333 4557889999999999766
Q ss_pred CCCcceeeEEeeecCCChHHHHHHH
Q 012346 255 AANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 255 ~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
.|. .+.|..+.+++...+
T Consensus 73 -~G~------~~~G~~~~~~l~~~~ 90 (106)
T 3kp8_A 73 -NGR------TYTGVRSLEALAVAS 90 (106)
T ss_dssp -TTE------EEESCCCHHHHHHHH
T ss_pred -CCE------EecCCCCHHHHHHHh
Confidence 242 256888888876654
No 293
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=87.30 E-value=2.7 Score=30.67 Aligned_cols=74 Identities=14% Similarity=0.009 Sum_probs=48.3
Q ss_pred EEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeec
Q 012346 189 LFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEG 268 (465)
Q Consensus 189 LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G 268 (465)
+.|++..+.+..|..+...+ +.+.+-.+.++.+...+ ...+++.|++..+|.+.+ .|. ++.+ |
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~-----~~~~~~~~~v~~~Pt~~~----~G~---~~~~--G 64 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK-----EMDQILEAGLTALPGLAV----DGE---LKIM--G 64 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC-----SHHHHHHHTCSSSSCEEE----TTE---EEEC--S
T ss_pred cEEEEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec-----CHHHHHHCCCCcCCEEEE----CCE---EEEc--C
Confidence 35777777888888776433 33444444466666666 235678899999999988 242 3333 8
Q ss_pred CC-ChHHHHHHH
Q 012346 269 PK-SPEEMLMIL 279 (465)
Q Consensus 269 ~~-~~~~~~~~L 279 (465)
.. +.+++.+.|
T Consensus 65 ~~~~~~~l~~~l 76 (77)
T 1ilo_A 65 RVASKEEIKKIL 76 (77)
T ss_dssp SCCCHHHHHHHC
T ss_pred CCCCHHHHHHHh
Confidence 86 888776543
No 294
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.05 E-value=0.39 Score=35.68 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=34.5
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhC-CCCHHHHHhhhhCCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAH-DWDLELAISSFTSSN 45 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~-~W~le~A~~~~~~~~ 45 (465)
.++|.|++++ |++. +.|+..|..+ +||+|.|+.-.|.+.
T Consensus 10 ~~~v~~L~~M-GF~~-~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 10 LTALESLIEM-GFPR-GRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp CCHHHHHHTT-TCCH-HHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 4688999985 9888 8999999999 799999999998754
No 295
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=86.96 E-value=1.2 Score=43.67 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=65.6
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..+|.+.+ ....|..+|++..+.+..|..+...+ ..+.+.+.. ++++...|.+..+ +..|++..||.+
T Consensus 256 ~~~f~~~~---~~~~k~~lv~f~a~wC~~C~~~~p~~---~~la~~~~~~~~v~~~~vd~~~~~----~~~~~v~~~Pt~ 325 (361)
T 3uem_A 256 GKNFEDVA---FDEKKNVFVEFYAPWCGHCKQLAPIW---DKLGETYKDHENIVIAKMDSTANE----VEAVKVHSFPTL 325 (361)
T ss_dssp TTTHHHHH---TCTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTTCB----CSSCCCCSSSEE
T ss_pred cCchhhhc---ccCCCcEEEEEecCcCHhHHHHHHHH---HHHHHHhccCCcEEEEEEECCccc----hhhcCCcccCeE
Confidence 34566554 45689999999999887776665322 234444443 4777777776555 567999999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~ 280 (465)
.++....+. ...+..|..+.+.|++.|.
T Consensus 326 ~~~~~~~~~---~~~~~~G~~~~~~l~~~l~ 353 (361)
T 3uem_A 326 KFFPASADR---TVIDYNGERTLDGFKKFLE 353 (361)
T ss_dssp EEECSSSSC---CCEECCSCSSHHHHHHHHT
T ss_pred EEEECCCCc---ceeEecCCCCHHHHHHHHH
Confidence 999642232 2346678889888887664
No 296
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=86.84 E-value=0.52 Score=35.03 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=31.9
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhh
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
.+.|..+.+.||..- ..|+..|+.++||++.|+.-.
T Consensus 10 ~~~Vk~LRe~TGag~-~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 10 KELLMKLRRKTGYSF-VNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp CHHHHHHHHHHCCCH-HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 478899999999765 899999999999999999764
No 297
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=86.38 E-value=4.9 Score=34.11 Aligned_cols=38 Identities=8% Similarity=-0.011 Sum_probs=28.4
Q ss_pred CCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 243 ~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
+..+|..+||++. | .++.+..|..+++++...|...+.
T Consensus 130 i~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~~ll~ 167 (169)
T 2v1m_A 130 IKWNFSKFLVDRQ-G---QPVKRYSPTTAPYDIEGDIMELLE 167 (169)
T ss_dssp CCSTTCEEEECTT-S---CEEEEECTTSCGGGGHHHHHHHHH
T ss_pred ccccceEEEECCC-C---CEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4456899999973 5 356677888888888888877664
No 298
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.26 E-value=0.64 Score=35.58 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=34.9
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCC-CCHHHHHhhhhCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHD-WDLELAISSFTSSN 45 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~-W~le~A~~~~~~~~ 45 (465)
..++|.|++++ |++. +.|+..|..++ ||+|.|+.-.|.+.
T Consensus 9 ~e~~v~~L~~M-GF~~-~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 9 DESVIIQLVEM-GFPM-DACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp CHHHHHHHHHH-SCCH-HHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 46889999995 9987 89999999998 69999999998754
No 299
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=86.05 E-value=2 Score=39.47 Aligned_cols=84 Identities=11% Similarity=0.111 Sum_probs=56.5
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
.+|.+++..+ ...++++|+++.+.+..|..+.. .+.++-.. ++.|...+++ .-.++..|++..+|+++
T Consensus 108 ~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p------~l~~la~~~~~v~f~~vd~~---~~~l~~~~~i~~~PTl~ 177 (217)
T 2trc_P 108 EQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNS------SLECLAAEYPMVKFCKIRAS---NTGAGDRFSSDVLPTLL 177 (217)
T ss_dssp HHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHTTCTTSEEEEEEHH---HHTCSTTSCGGGCSEEE
T ss_pred HHHHHHHHhc-CCCcEEEEEEECCCCccHHHHHH------HHHHHHHHCCCeEEEEEECC---cHHHHHHCCCCCCCEEE
Confidence 3455555432 23599999999999988888753 33344333 5677777765 33467789999999998
Q ss_pred EEecCCCcceeeEEeeecCCC
Q 012346 251 VVMPAANQRIALLQQVEGPKS 271 (465)
Q Consensus 251 ii~~~~~~~~~vl~~i~G~~~ 271 (465)
++. .| .++.++.|..+
T Consensus 178 ~~~--~G---~~v~~~~G~~~ 193 (217)
T 2trc_P 178 VYK--GG---ELISNFISVAE 193 (217)
T ss_dssp EEE--TT---EEEEEETTGGG
T ss_pred EEE--CC---EEEEEEeCCcc
Confidence 885 25 24567777654
No 300
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=85.97 E-value=4.3 Score=39.67 Aligned_cols=108 Identities=6% Similarity=0.039 Sum_probs=68.8
Q ss_pred ccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCC--CC
Q 012346 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASR--YP 247 (465)
Q Consensus 170 f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~--~P 247 (465)
+-..++...+ ....+..+|++.++.+.+|..+...+ ..+.+-++..+.|...|.+..+...+++.|++.. +|
T Consensus 122 ~~~~~~~~~~---~~~~~~~~v~F~~~~~~~~~~~~~~~---~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P 195 (361)
T 3uem_A 122 FTEQTAPKIF---GGEIKTHILLFLPKSVSDYDGKLSNF---KTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECP 195 (361)
T ss_dssp CSTTTHHHHH---SCSCCEEEEEECCSSSSSHHHHHHHH---HHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCS
T ss_pred cCcccHHHHh---cCCCCcEEEEEEeCCchhHHHHHHHH---HHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCc
Confidence 3444555332 34456778888888888888776322 1333334446777777776556778899999987 99
Q ss_pred cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 248 ~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.+.++....+ +.....-.|..+.+.+.+.+...++.
T Consensus 196 ~~~~~~~~~~--~~ky~~~~~~~~~~~l~~fi~~~l~g 231 (361)
T 3uem_A 196 AVRLITLEEE--MTKYKPESEELTAERITEFCHRFLEG 231 (361)
T ss_dssp EEEEEECC----CCEECCSSCCCCHHHHHHHHHHHHTT
T ss_pred cEEEEEcCCc--ccccCCCccccCHHHHHHHHHHHhcC
Confidence 9999986211 11111112678999888888877753
No 301
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=85.73 E-value=2.2 Score=46.64 Aligned_cols=103 Identities=10% Similarity=0.048 Sum_probs=68.7
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
+-.+.........|+++|++..+.+..|..+...+ +.+.+-.+.++.+...|++... .+++.|++..+|.++++.
T Consensus 663 ~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~ 737 (780)
T 3apo_A 663 TPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIKGKVRAGKVDCQAYP--QTCQKAGIKAYPSVKLYQ 737 (780)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTCH--HHHHHTTCCSSSEEEEEE
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCceEEEEECCCCH--HHHHhcCCCcCCEEEEEc
Confidence 33443344556789999999998877776665332 3444444457777777776433 478889999999999883
Q ss_pred cCCCcceeeEEeeec----CCChHHHHHHHHHHHHhh
Q 012346 254 PAANQRIALLQQVEG----PKSPEEMLMILQKVIEES 286 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G----~~~~~~~~~~L~~~~~~~ 286 (465)
.|.. +.++.| ..+.+++...|...+.+.
T Consensus 738 --~g~~---~~~~~G~~~g~~~~~~l~~~l~~~l~~~ 769 (780)
T 3apo_A 738 --YERA---KKSIWEEQINSRDAKTIAALIYGKLETL 769 (780)
T ss_dssp --EETT---TTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred --CCCc---cccccCcccCCcCHHHHHHHHHHHHHHh
Confidence 2432 222333 578999999888877554
No 302
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=85.61 E-value=0.56 Score=40.06 Aligned_cols=34 Identities=9% Similarity=-0.170 Sum_probs=23.7
Q ss_pred HHHHHhCCCC----CCC--cEEEEecCCCcceeeEEeeecCCCh
Q 012346 235 FKMSNSLKAS----RYP--FCAVVMPAANQRIALLQQVEGPKSP 272 (465)
Q Consensus 235 ~~va~~l~~~----~~P--~i~ii~~~~~~~~~vl~~i~G~~~~ 272 (465)
..+++.|++. .+| ..+||++. | .++.+..|..+.
T Consensus 105 ~~~~~~~~v~~~~~~~p~~~~~lid~~-G---~i~~~~~g~~~~ 144 (160)
T 1xvw_A 105 GAVSQAYGVFNEQAGIANRGTFVVDRS-G---IIRFAEMKQPGE 144 (160)
T ss_dssp THHHHHTTCEETTTTEECSEEEEECTT-S---BEEEEEECCTTC
T ss_pred hHHHHHcCCccccCCCeeeeEEEECCC-C---eEEEEEecCCCC
Confidence 4567788887 888 89999873 5 355566676543
No 303
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=85.48 E-value=5.8 Score=35.37 Aligned_cols=48 Identities=4% Similarity=0.038 Sum_probs=32.6
Q ss_pred HHHHHhCCCC-CC---------------CcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 235 FKMSNSLKAS-RY---------------PFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 235 ~~va~~l~~~-~~---------------P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
..+++.|++. .. |.++||++. | .++.++.|..+++.+...|...+...
T Consensus 118 ~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~-G---~i~~~~~g~~~~~~~~~~i~~~l~~l 181 (200)
T 2b7k_A 118 KNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPE-G---QFVDALGRNYDEKTGVDKIVEHVKSY 181 (200)
T ss_dssp HHHHHHTTC--------------CTTTCCCEEEECTT-S---CEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHcCcEEeeccccCCCCCceeeecceEEEECCC-C---cEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4567777775 23 377888873 5 35566778888888888888877654
No 304
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=85.20 E-value=2 Score=40.56 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=61.8
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcEEE
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~i 251 (465)
.|.+++..+ ...++++|++..+.+..|..+.. .+.++-.. ++.|..++++. ..++..|++..+|++++
T Consensus 122 ~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~p------~l~~La~~~~~v~f~kVd~d~---~~l~~~~~I~~~PTll~ 191 (245)
T 1a0r_P 122 QFLETIEKE-QKITTIVVHIYEDGIKGCDALNS------SLICLAAEYPMVKFCKIKASN---TGAGDRFSSDVLPTLLV 191 (245)
T ss_dssp HHHHHHHSS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHHHCTTSEEEEEEHHH---HCCTTSSCTTTCSEEEE
T ss_pred HHHHHHHHh-cCCCEEEEEEECCCChHHHHHHH------HHHHHHHHCCCCEEEEEeCCc---HHHHHHCCCCCCCEEEE
Confidence 344444322 24899999999999999988753 33333332 47777777654 34677899999999987
Q ss_pred EecCCCcceeeEEeeecCCCh---HHHHHHHHHHHHhh
Q 012346 252 VMPAANQRIALLQQVEGPKSP---EEMLMILQKVIEES 286 (465)
Q Consensus 252 i~~~~~~~~~vl~~i~G~~~~---~~~~~~L~~~~~~~ 286 (465)
+. .| .++.++.|..+. +-....|..+|.++
T Consensus 192 ~~--~G---~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 192 YK--GG---ELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp EE--TT---EEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred EE--CC---EEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 75 25 245677775321 11234455555554
No 305
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=85.18 E-value=1.8 Score=38.88 Aligned_cols=93 Identities=13% Similarity=0.029 Sum_probs=51.4
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHH--------------------------HHH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--------------------------FKM 237 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg--------------------------~~v 237 (465)
.+|+++|++. ...+..|......+ +.-..+|-+.++.+.+.++++.+. ..+
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~l--~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~ 112 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQF--SDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCI 112 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHH--HHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHH
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHH
Confidence 3577888877 65554444333211 011111212356666666655331 246
Q ss_pred HHhCCCC------CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHHH
Q 012346 238 SNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKVI 283 (465)
Q Consensus 238 a~~l~~~------~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~~ 283 (465)
++.|++. .+|..+||++. | .++.+..|.. +.++++..|....
T Consensus 113 ~~~ygv~~~~~g~~~P~~~lid~~-G---~i~~~~~g~~~~~~~~~ell~~l~~l~ 164 (202)
T 1uul_A 113 MKSYGVLKEEDGVAYRGLFIIDPK-Q---NLRQITVNDLPVGRDVDEALRLVKAFQ 164 (202)
T ss_dssp HHHHTCEETTTTEECEEEEEECTT-S---BEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred HHHcCCccCCCCceeeEEEEECCC-C---EEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence 6678887 89999999974 4 2444454543 3577777665443
No 306
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=85.17 E-value=1.6 Score=42.86 Aligned_cols=72 Identities=13% Similarity=0.214 Sum_probs=57.0
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeC-CCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSN-FPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~-fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
..++|.|+. +|+.+.-....++|+.+|-.-|......++..-+|+-. |..+.+.+ +.||.++||.++..|++
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D---~~~L~~~~ik~g~~l~L 76 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAAD---NVKISALELKPNFKLMM 76 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCT---TSBTTSSCCC--CEEEE
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCc---cccHHHcCCCCCCEEEE
Confidence 467899997 78889999999999999999998877667777788743 55566643 67999999999999886
No 307
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=85.16 E-value=3 Score=35.61 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=24.5
Q ss_pred CCCCcEEEEecCCCcceeeEEeeecCC--ChHHHHHHHHH
Q 012346 244 SRYPFCAVVMPAANQRIALLQQVEGPK--SPEEMLMILQK 281 (465)
Q Consensus 244 ~~~P~i~ii~~~~~~~~~vl~~i~G~~--~~~~~~~~L~~ 281 (465)
..+|.++||+ . | .++.+..|.. +++++.+.|..
T Consensus 136 ~~~P~~~lid-~-G---~i~~~~~g~~~~~~~~l~~~l~~ 170 (172)
T 2k6v_A 136 DHTATTFVVK-E-G---RLVLLYSPDKAEATDRVVADLQA 170 (172)
T ss_dssp EECCCEEEEE-T-T---EEEEEECHHHHTCHHHHHHHHHH
T ss_pred ecCCEEEEEE-C-C---EEEEEECCCCCCCHHHHHHHHHH
Confidence 4679999999 4 6 3566677776 78888877764
No 308
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=84.90 E-value=1.6 Score=36.21 Aligned_cols=82 Identities=7% Similarity=0.036 Sum_probs=54.7
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--cceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
..+|.+.+..+ ...++++|+++.+.+..|..+. +.+.++-++ ++.|...|++.. +..|++...|++
T Consensus 10 ~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~------p~l~~la~~~~~v~f~kvd~d~~-----~~~~~v~~~PT~ 77 (118)
T 3evi_A 10 GNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVN------QHLSLLARKFPETKFVKAIVNSC-----IQHYHDNCLPTI 77 (118)
T ss_dssp GGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHH------HHHHHHHHHCTTSEEEEEEGGGT-----STTCCGGGCSEE
T ss_pred HHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHCCCCEEEEEEhHHh-----HHHCCCCCCCEE
Confidence 34555555322 1245999999999887776654 334444333 467788887753 578999999999
Q ss_pred EEEecCCCcceeeEEeeecCC
Q 012346 250 AVVMPAANQRIALLQQVEGPK 270 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~ 270 (465)
+++-. | ..+.++.|..
T Consensus 78 ~~fk~--G---~~v~~~~G~~ 93 (118)
T 3evi_A 78 FVYKN--G---QIEAKFIGII 93 (118)
T ss_dssp EEEET--T---EEEEEEESTT
T ss_pred EEEEC--C---EEEEEEeChh
Confidence 98874 5 3567777754
No 309
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=84.67 E-value=3.6 Score=37.62 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=53.2
Q ss_pred CcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHH--------------------------HHHH
Q 012346 186 FKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--------------------------FKMS 238 (465)
Q Consensus 186 ~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg--------------------------~~va 238 (465)
+||+||++. ...+..|......+ +.-..+|-+.++.+.+.++++.+. ..++
T Consensus 56 Gk~vll~F~pa~~Cp~C~~~~~~l--~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~ 133 (220)
T 1zye_A 56 GKYLVLFFYPLDFTFVCPTEIIAF--SDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS 133 (220)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHH
Confidence 577888887 66666665443222 111112222356666666655321 2567
Q ss_pred HhCCCC------CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHHH
Q 012346 239 NSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKVI 283 (465)
Q Consensus 239 ~~l~~~------~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~~ 283 (465)
+.|++. .+|.++||++. | .++.+..|.. +.++++..|....
T Consensus 134 ~~ygv~~~~~g~~~P~~~liD~~-G---~I~~~~~g~~~~~~~~~ell~~l~~l~ 184 (220)
T 1zye_A 134 RDYGVLLEGPGLALRGLFIIDPN-G---VIKHLSVNDLPVGRSVEETLRLVKAFQ 184 (220)
T ss_dssp HHTTCEETTTTEECEEEEEECTT-S---BEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHhCCeecCCCcccceEEEECCC-C---EEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 788887 89999999974 4 2444444543 4577777665543
No 310
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=84.33 E-value=5.2 Score=33.17 Aligned_cols=89 Identities=12% Similarity=0.068 Sum_probs=59.4
Q ss_pred hcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh---ccceEeecccCchHHHHHHHhCCCCC--CCcEEEEecCCCc
Q 012346 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASR--YPFCAVVMPAANQ 258 (465)
Q Consensus 184 ~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~---~~fv~w~~~v~~~Eg~~va~~l~~~~--~P~i~ii~~~~~~ 258 (465)
...++++|++..+ +..|..+. +.+.++-+ ..+.|..+|++.. -.++..|++.. .|.++++....|.
T Consensus 21 ~~~~pv~v~f~a~-~~~c~~~~------p~l~~~A~~~~gk~~f~~vd~d~~--~~~a~~~gi~~~~iPtl~i~~~~~g~ 91 (133)
T 2djk_A 21 SAGIPLAYIFAET-AEERKELS------DKLKPIAEAQRGVINFGTIDAKAF--GAHAGNLNLKTDKFPAFAIQEVAKNQ 91 (133)
T ss_dssp HTTSCEEEEECSC-SSSHHHHH------HHHHHHHHSSTTTSEEEEECTTTT--GGGTTTTTCCSSSSSEEEEECTTTCC
T ss_pred cCCCCEEEEEecC-hhhHHHHH------HHHHHHHHHhCCeEEEEEEchHHh--HHHHHHcCCCcccCCEEEEEecCcCc
Confidence 4567888988876 55665433 33333333 3577777776633 34788999998 9999998753343
Q ss_pred ceeeEEeee--cCCChHHHHHHHHHHHHh
Q 012346 259 RIALLQQVE--GPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 259 ~~~vl~~i~--G~~~~~~~~~~L~~~~~~ 285 (465)
. . ++. |..+.+.+...+..+++.
T Consensus 92 ~---~-~~~~~g~~~~~~l~~fi~~~l~G 116 (133)
T 2djk_A 92 K---F-PFDQEKEITFEAIKAFVDDFVAG 116 (133)
T ss_dssp B---C-CCCSSSCCCHHHHHHHHHHHHHT
T ss_pred c---c-CCCCccccCHHHHHHHHHHHHcC
Confidence 2 2 343 888998888888777753
No 311
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=84.26 E-value=1.6 Score=36.51 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=51.7
Q ss_pred EEEECCCCc-eEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCC-------CCeeEEE
Q 012346 391 VLVRFPNGE-RKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLH-------PQASLFV 462 (465)
Q Consensus 391 i~iRlP~G~-r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~-------p~~~L~v 462 (465)
+.||.-.|+ .+.-....++||.+|..-|......++....|+ |-.+.+.+ ++||.+.|+. ..++|.+
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi--~~Gk~LeD---~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY--KDDQLLDD---GKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCT---TSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE--ECCeECCC---CCCHHHcCcccccccCCCCCEEEE
Confidence 344444565 477789999999999999998776677888888 56677742 6899999999 5677765
No 312
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=83.97 E-value=4.3 Score=36.91 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=28.6
Q ss_pred HHHHhCCCC-----CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHHH
Q 012346 236 KMSNSLKAS-----RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKVI 283 (465)
Q Consensus 236 ~va~~l~~~-----~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~~ 283 (465)
.+++.|++. .+|..+||++. |. ++.+..|.. +.++++..|....
T Consensus 127 ~~~~~ygv~~~~g~~~p~~~lID~~-G~---i~~~~~~~~~~~~~~~ell~~l~~l~ 179 (213)
T 2i81_A 127 SISKDYNVLFDDSVSLRAFVLIDMN-GI---VQHLLVNNLAIGRSVDEILRIIDAIQ 179 (213)
T ss_dssp HHHHHTTCEETTTEECEEEEEECTT-SB---EEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCccccCCcccEEEEECCC-CE---EEEEEecCCCCCCCHHHHHHHHHHHH
Confidence 467778887 79999999873 42 344444443 4677777765443
No 313
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=83.35 E-value=1.8 Score=40.05 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=49.3
Q ss_pred eEEEEecCCCcHHHHHHHHHhcCCCCCc-CeEEEeCCCCcccCC-CCccCcccccCCCCCeeEEEEe
Q 012346 400 RKERRFHSTAVVQLLYDYVDSLGCLEVQ-NYSLVSNFPRVVYST-DKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 400 r~~rrF~~~~tl~~l~~fv~~~~~~~~~-~f~L~t~fPr~~~~~-~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
..+..|+..+|+.+|+..|......+.. +++|-.-+....+.. ++.++||+|++|..+..|+||.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~ 207 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQ 207 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEE
Confidence 4679999999999999999887655443 677755443333332 2347899999999999999985
No 314
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=82.42 E-value=1.4 Score=34.55 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=34.7
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhC-CCCHHHHHhhhhCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAH-DWDLELAISSFTSSN 45 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~-~W~le~A~~~~~~~~ 45 (465)
..++|.|++++ |++. +.|+..|..+ |||+|.|+.-.|...
T Consensus 29 ~e~~v~~L~~M-GF~~-~~a~~AL~~t~n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 29 NEEIVAQLVSM-GFSQ-LHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp CHHHHHHHHHH-TCCH-HHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 46889999995 9998 8999999988 599999999998754
No 315
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=82.09 E-value=2 Score=30.07 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=36.8
Q ss_pred chHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 3 ~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
+.++++.+.+++.=.-+...++..|..+++|++.|++.....
T Consensus 3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 467889999999777777899999999999999999988764
No 316
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=81.99 E-value=7 Score=32.39 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=55.1
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.+.++|.|+-.+|+.+.-+...+++|..|++........+...+.|+-. ...+.. +.|.+++|+..+.+|-|-
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD--G~rI~~---~~TP~dL~MEDgD~IdV~ 110 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE--GQRIAD---NHTPKELGMEEEDVIEVY 110 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET--TEECCT---TCCTTTTTCCTTCEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEEC--CeECCC---CCCHHHcCCCCCCEEEEE
Confidence 3678999999999999999999999999988765544445666666543 344433 569999999988887653
No 317
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=81.90 E-value=4.9 Score=41.59 Aligned_cols=107 Identities=6% Similarity=0.032 Sum_probs=68.1
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhc--------cceEeecccCchHHHHHHHhCCCC
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--------NFVSWGGSIRASEGFKMSNSLKAS 244 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~--------~fv~w~~~v~~~Eg~~va~~l~~~ 244 (465)
.+|.+++. ....|++||++..+.+..|..+...+ +.+.+-+.. ++.|..+|++.. ..+++.|++.
T Consensus 31 ~~F~~~l~--~~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~~--~~la~~y~V~ 103 (470)
T 3qcp_A 31 DDFSRVHR--VAPLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCASE--VDLCRKYDIN 103 (470)
T ss_dssp SCGGGTCT--TGGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTTC--HHHHHHTTCC
T ss_pred HHHHHHHH--hCCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECCCC--HHHHHHcCCC
Confidence 44554442 24568999999999887777665322 233333321 378888887654 4678999999
Q ss_pred CCCcEEEEecCC--------C-cceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 245 RYPFCAVVMPAA--------N-QRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 245 ~~P~i~ii~~~~--------~-~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.||.+.++.... | .....+..+...++.+++...+...+.++
T Consensus 104 ~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Link~ 154 (470)
T 3qcp_A 104 FVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKH 154 (470)
T ss_dssp SSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHHHH
T ss_pred ccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhhhc
Confidence 999999996421 1 11222245555677777777777666544
No 318
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=81.77 E-value=5.3 Score=37.61 Aligned_cols=98 Identities=9% Similarity=0.105 Sum_probs=64.8
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEe--CCCCCCchHHHhhcCCCHHHHHHhh---ccceEeecccCc---hHHHHHHHhCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLH--SPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRA---SEGFKMSNSLK 242 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~--~~~~~~s~~f~r~~l~~~~v~~~l~---~~fv~w~~~v~~---~Eg~~va~~l~ 242 (465)
-..+|.+++ ...++.||.+. .|.+. ...+| +.+.+-+. .+++|..+|+++ .+...++..|+
T Consensus 22 t~~nF~~vi----~~~~~vlV~Fy~~ApWCg-----l~P~~--e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~ 90 (248)
T 2c0g_A 22 DELSFEKTV----ERFPYSVVKFDIASPYGE-----KHEAF--TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK 90 (248)
T ss_dssp CTTTHHHHH----TTSSEEEEEEEESSCCSH-----HHHHH--HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred CHHHHHHHH----hcCCCEEEEEECCCCCCc-----cHHHH--HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence 456787755 45788999999 77552 22222 23333332 357888888776 23567899999
Q ss_pred CC--CCCcEEEEecCCCcceeeEEee--ecCCChHHHHHHHHHHH
Q 012346 243 AS--RYPFCAVVMPAANQRIALLQQV--EGPKSPEEMLMILQKVI 283 (465)
Q Consensus 243 ~~--~~P~i~ii~~~~~~~~~vl~~i--~G~~~~~~~~~~L~~~~ 283 (465)
+. .||++.++- |.. ...... .|..+.+.|.+.|...+
T Consensus 91 V~~~~~PTl~~F~---G~~-~~~~~y~~~G~~~~~~L~~fi~~~~ 131 (248)
T 2c0g_A 91 VDDKNFPSIFLFK---GNA-DEYVQLPSHVDVTLDNLKAFVSANT 131 (248)
T ss_dssp CCTTSCCEEEEES---SSS-SSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred CCcCCCCeEEEEe---CCc-CcceeecccCCCCHHHHHHHHHHhh
Confidence 99 999998886 431 112334 68889998888887654
No 319
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=81.74 E-value=3 Score=39.12 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=64.3
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeC--CCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCc---hHHHHHHHhCCC
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHS--PDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRA---SEGFKMSNSLKA 243 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~--~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~---~Eg~~va~~l~~ 243 (465)
-..+|.+.+ ...++.||.+.. |.+. ...+| +.+.+-+. .+++|..+|+++ .+...++..|++
T Consensus 11 t~~nF~~~i----~~~~~vlV~FyA~~pWCg-----l~P~~--e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V 79 (240)
T 2qc7_A 11 DTVTFYKVI----PKSKFVLVKFDTQYPYGE-----KQDEF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL 79 (240)
T ss_dssp CTTHHHHHG----GGCSEEEEEECCSSCCSH-----HHHHH--HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred CHHHHHHHH----cCCCCEEEEEeCCCCCCc-----chHHH--HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence 344566654 356899999998 6543 22222 23333343 357888888764 234568999999
Q ss_pred C--CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 244 S--RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 244 ~--~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
. .||++.++-. |. .....+..|..+.+.|+..|...
T Consensus 80 ~~~~~PTl~~f~~--G~-~~~~~~y~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 80 DKESYPVFYLFRD--GD-FENPVPYTGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp CGGGCSEEEEEET--TC-SSCCEECCSCSCHHHHHHHHHHT
T ss_pred CCCCCCEEEEEeC--CC-cCcceeecCCCCHHHHHHHHHHh
Confidence 9 9999999864 43 11233567888998888887765
No 320
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=81.34 E-value=1.4 Score=48.22 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=62.6
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEEEEe
Q 012346 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~ 253 (465)
+|.+++ +..+++||+++.+.+..|..+...+ +.+.+-+...+.+..+|++.. ..+++.|++..||.+.++-
T Consensus 125 ~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~ 195 (780)
T 3apo_A 125 EFDAAV----NSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVDGLLRIGAVNCGDD--RMLCRMKGVNSYPSLFIFR 195 (780)
T ss_dssp HHHHHH----TSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTC--SSCC--------CEEEEEC
T ss_pred hHHhhh----cCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhcCceEEEEEeCCCc--HHHHHHcCCceeeeEEEEe
Confidence 455555 6789999999999987777776433 345555555677777777644 3578889999999988875
Q ss_pred cCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 254 PAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 254 ~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
. |.. +.+..|..+.+.+.+.|...+.
T Consensus 196 ~--g~~---~~~~~G~~~~~~l~~~l~~~~~ 221 (780)
T 3apo_A 196 S--GMA---AVKYNGDRSKESLVAFAMQHVR 221 (780)
T ss_dssp T--TSC---CEECCSCSCHHHHHHHHHTTSC
T ss_pred C--CcE---eeEecCCCCHHHHHHHHHHhch
Confidence 3 532 4567798899998888876554
No 321
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=81.29 E-value=4.2 Score=37.89 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=49.0
Q ss_pred EEEEecCCCcHHHHHHHHHhcCCCCCc-CeEEEeCCCCcccCC-CCccCcccccCCCCCeeEEEEe
Q 012346 401 KERRFHSTAVVQLLYDYVDSLGCLEVQ-NYSLVSNFPRVVYST-DKFSLSLKEAGLHPQASLFVEL 464 (465)
Q Consensus 401 ~~rrF~~~~tl~~l~~fv~~~~~~~~~-~f~L~t~fPr~~~~~-~~~~~TL~e~gL~p~~~L~ve~ 464 (465)
++.+|+..+|+.+|+..|......+.. +++|-.-+-...+.. .+.+.||+|++|..+..|+||.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~ 219 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEP 219 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEE
Confidence 568999999999999999887665544 688766443333322 2347899999999999999985
No 322
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=81.27 E-value=5.8 Score=34.89 Aligned_cols=39 Identities=5% Similarity=0.001 Sum_probs=28.9
Q ss_pred CCCCCC---cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 242 KASRYP---FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 242 ~~~~~P---~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
++..+| ..+||++. | .++.+..|..+++++...|...+.
T Consensus 142 ~~~~iP~~~~~~liD~~-G---~i~~~~~g~~~~~~l~~~i~~lL~ 183 (187)
T 3dwv_A 142 ATKAIKWNFTSFLIDRD-G---VPVERFSPGASVKDIEEKLIPLLG 183 (187)
T ss_dssp SSSSCCSTTCEEEECTT-S---CEEEEECTTCCHHHHHHHHHHHC-
T ss_pred CCCccccceeEEEECCC-C---CEEEEECCCCCHHHHHHHHHHHHh
Confidence 445677 89999973 5 356677788999998888877764
No 323
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=80.41 E-value=6.6 Score=34.75 Aligned_cols=91 Identities=15% Similarity=0.028 Sum_probs=50.8
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHH-HHhhccceEeecccCchHH--------------------------HH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLA-AFVNENFVSWGGSIRASEG--------------------------FK 236 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~-~~l~~~fv~w~~~v~~~Eg--------------------------~~ 236 (465)
.+|+++|++. ...+..|......+ ..+. +|-+.++.+.+.++++.+. ..
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 109 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEIIAF---SNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRR 109 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhCCCCCCceEEEECCcHH
Confidence 4577777777 65554444333211 1111 1112356666666655431 24
Q ss_pred HHHhCCCC------CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHH
Q 012346 237 MSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (465)
Q Consensus 237 va~~l~~~------~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~ 282 (465)
+++.|++. .+|..+||++. | .++.+..|.. +.++++..|...
T Consensus 110 ~~~~~gv~~~~~~~~~P~~~lid~~-G---~i~~~~~g~~~~~~~~~e~l~~l~~l 161 (197)
T 1qmv_A 110 LSEDYGVLKTDEGIAYRGLFIIDGK-G---VLRQITVNDLPVGRSVDEALRLVQAF 161 (197)
T ss_dssp HHHHTTCEETTTTEECEEEEEECTT-S---BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHcCCccCCCCceeeEEEEECCC-C---cEEEEEeCCCCCCCCHHHHHHHHHhc
Confidence 67778887 79999999973 4 2455555644 456776666543
No 324
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=81.05 E-value=0.36 Score=41.31 Aligned_cols=82 Identities=7% Similarity=-0.049 Sum_probs=41.1
Q ss_pred HHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHh-hccceEeecccCch-H-HH------------------HHHHh
Q 012346 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-NENFVSWGGSIRAS-E-GF------------------KMSNS 240 (465)
Q Consensus 182 Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l-~~~fv~w~~~v~~~-E-g~------------------~va~~ 240 (465)
+.-.+|++||++..+.+..|......+ ...-..++- +.++.+.+.++++. + .. .+++.
T Consensus 29 ~~~~gk~vll~f~a~~C~~C~~~~~~l-~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 107 (159)
T 2ls5_A 29 SSLRGKVVMLQFTASWCGVCRKEMPFI-EKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAK 107 (159)
Confidence 333567888888877665554443221 110111122 24566666655543 1 11 23334
Q ss_pred CC--CCCCCcEEEEecCCCcceeeEEeeec
Q 012346 241 LK--ASRYPFCAVVMPAANQRIALLQQVEG 268 (465)
Q Consensus 241 l~--~~~~P~i~ii~~~~~~~~~vl~~i~G 268 (465)
|+ +..+|.++||++. | .++.+..|
T Consensus 108 ~~~~~~~~P~~~lid~~-G---~i~~~~~g 133 (159)
T 2ls5_A 108 YALRDAGITRNVLIDRE-G---KIVKLTRL 133 (159)
Confidence 44 3458998888863 4 23444445
No 325
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=79.69 E-value=4.5 Score=34.35 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=16.3
Q ss_pred HHHHhCCCCC------------CCcEEEEecCCC
Q 012346 236 KMSNSLKASR------------YPFCAVVMPAAN 257 (465)
Q Consensus 236 ~va~~l~~~~------------~P~i~ii~~~~~ 257 (465)
.+++.|++.. .|..+||++. |
T Consensus 103 ~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~-G 135 (163)
T 3gkn_A 103 ALCRAFDVIKEKNMYGKQVLGIERSTFLLSPE-G 135 (163)
T ss_dssp HHHHHTTCEEEEEETTEEEEEECCEEEEECTT-S
T ss_pred HHHHHhCCccccccccccccCcceEEEEECCC-C
Confidence 5667788765 8999999974 5
No 326
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=79.64 E-value=3.4 Score=34.44 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=50.8
Q ss_pred EECCCCc-eEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCC-------CeeEEEE
Q 012346 393 VRFPNGE-RKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHP-------QASLFVE 463 (465)
Q Consensus 393 iRlP~G~-r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p-------~~~L~ve 463 (465)
||+..|+ .+.-....++||.+|-.-|......++..-.|+ |-.+.+. .++||.|.|+.. .++|.+-
T Consensus 5 l~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI--~~Gk~Le---D~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY--KDDQLLD---DGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE--ETTEECC---TTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred EEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE--eCCeECC---CcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 4444555 577788899999999999987766667777887 4566664 278999999998 8887763
No 327
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=79.35 E-value=14 Score=29.61 Aligned_cols=74 Identities=12% Similarity=0.017 Sum_probs=52.5
Q ss_pred CCCCeEEEEEECCCCc-eEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 384 KGPNVTQVLVRFPNGE-RKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 384 ~~~~~~~i~iRlP~G~-r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
..++.++|.++-.+|+ .+.-+...+++++.|++.-..........+.|.-. -..+. .+.|-+++|+..+..+-|
T Consensus 21 ~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD--G~rI~---~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 21 ETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD--GTKLS---GRELPADLGMESGDLIEV 95 (97)
T ss_dssp CSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET--TEECC---SCSCHHHHTCCTTEEEEE
T ss_pred CCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEEC--CEEcC---CCCCHHHcCCCCCCEEEE
Confidence 3457899999999995 78888999999999887655444444455555432 33343 256999999987776644
No 328
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=79.10 E-value=6.2 Score=32.15 Aligned_cols=71 Identities=13% Similarity=-0.044 Sum_probs=52.0
Q ss_pred CeEEEEEECCC--C--ceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCC-CCeeEE
Q 012346 387 NVTQVLVRFPN--G--ERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLH-PQASLF 461 (465)
Q Consensus 387 ~~~~i~iRlP~--G--~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~-p~~~L~ 461 (465)
+.+++++.+-| | ..+.-.+.+++||.+|-+-|.....+++..-+|+. -++... .+.||.+.|+. ++.+++
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~--ggkll~---D~~TL~~ygI~~~G~t~h 95 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVI--GQRLAR---DQETLHSHGVRQNGDSAY 95 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE--TTEEEC---TTCBTGGGTCCSTTCEEE
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEec--cCeEcc---CcCcHHHcCCCCCCCEEE
Confidence 45666665544 3 47888999999999999999876666677677763 465332 27899999994 888777
Q ss_pred E
Q 012346 462 V 462 (465)
Q Consensus 462 v 462 (465)
+
T Consensus 96 L 96 (105)
T 4dbg_A 96 L 96 (105)
T ss_dssp E
T ss_pred E
Confidence 5
No 329
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=78.63 E-value=8.7 Score=34.27 Aligned_cols=109 Identities=13% Similarity=0.123 Sum_probs=63.2
Q ss_pred CccccCHHHHHHHHHhcCcEEEEEEeC----C---CCCCchHHHhhcCCCHHHHHHhh-----ccceEeecccCchHHHH
Q 012346 169 NFVSEGFMDALQRSRSVFKLLFVYLHS----P---DHPDTPAFCEGTLCNEVLAAFVN-----ENFVSWGGSIRASEGFK 236 (465)
Q Consensus 169 ~f~~gs~~eAl~~Ak~e~K~LlVyL~~----~---~~~~s~~f~r~~l~~~~v~~~l~-----~~fv~w~~~v~~~Eg~~ 236 (465)
.+-..+|++.+. .....++||.+.. + .+.-|..|- -+| +.+.+-.. .++.|..+|++ +.-.
T Consensus 22 ~lt~~nF~~~v~--~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~-P~~--e~lA~~~~~~~~~~~v~f~kvD~d--~~~~ 94 (178)
T 3ga4_A 22 TVTADNYPLLSR--GVPGYFNILYITMRGTNSNGMSCQLCHDFE-KTY--HAVADVIRSQAPQSLNLFFTVDVN--EVPQ 94 (178)
T ss_dssp ECCTTTHHHHTT--CCTTCEEEEEEECCSBCTTSCBCHHHHHHH-HHH--HHHHHHHHHHCTTCCEEEEEEETT--TCHH
T ss_pred ECCHHHHHHHHc--ccCCCcEEEEEeCCCCCCCCCCChhHHHHH-HHH--HHHHHHhhhccCCCCEEEEEEECc--cCHH
Confidence 345667876543 2346789999987 2 333333332 111 12222222 35667777766 4667
Q ss_pred HHHhCCCCCCCcEEEEecCCCcc----------eeeEEeeec-CCChHHHHHHHHHHHH
Q 012346 237 MSNSLKASRYPFCAVVMPAANQR----------IALLQQVEG-PKSPEEMLMILQKVIE 284 (465)
Q Consensus 237 va~~l~~~~~P~i~ii~~~~~~~----------~~vl~~i~G-~~~~~~~~~~L~~~~~ 284 (465)
+++.|++.++|.+.++-+..+.. -.-..-..| ..+++.|.+.|..-+.
T Consensus 95 la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~ 153 (178)
T 3ga4_A 95 LVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILN 153 (178)
T ss_dssp HHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcC
Confidence 89999999999999998643221 001111124 6788888777765443
No 330
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=78.16 E-value=14 Score=31.98 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=26.3
Q ss_pred CCc----EEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 246 YPF----CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 246 ~P~----i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
+|. .+||++. | .++.+..|..+++++...|...+.+
T Consensus 132 ~p~~~~~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~~lL~~ 171 (180)
T 3kij_A 132 EPRWNFWKYLVNPE-G---QVVKFWRPEEPIEVIRPDIAALVRQ 171 (180)
T ss_dssp CCSSTTCEEEECTT-S---CEEEEECTTCCGGGTHHHHHHHHHH
T ss_pred CccccceEEEECCC-C---CEEEEECCCCCHHHHHHHHHHHHHH
Confidence 566 7888863 5 3567778888998888888777644
No 331
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.83 E-value=2.8 Score=31.38 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=36.0
Q ss_pred chHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 3 ~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
+..+++.+++++.-.=|.+.....|+++++|++.||...+.-
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 367889999999766666789999999999999999998763
No 332
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=77.26 E-value=1.1 Score=40.96 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=31.8
Q ss_pred HHHHhCCCCCCCcEEEEecCCCcceeeEEee-------ecCCChHHHHHHHHHHHHh
Q 012346 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQV-------EGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i-------~G~~~~~~~~~~L~~~~~~ 285 (465)
.+++.|++..+|.++||+.. | ++.-...+ .|..+.+++...|...+..
T Consensus 134 ~~~~~~~v~~~P~~~liD~~-G-~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~ 188 (218)
T 3u5r_E 134 SVAKAYGAACTPDFFLYDRE-R-RLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKG 188 (218)
T ss_dssp HHHHHHTCCEESEEEEECTT-C-BEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCeEEEECCC-C-cEEEeccccccccccccccCHHHHHHHHHHHHcC
Confidence 57788999999999999873 4 23211111 2234577888888777654
No 333
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=77.10 E-value=8 Score=33.65 Aligned_cols=33 Identities=6% Similarity=-0.086 Sum_probs=23.2
Q ss_pred CCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHH
Q 012346 244 SRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 244 ~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~ 280 (465)
..+|.++||++. | .++.+..|..+++++...|.
T Consensus 148 ~~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~ 180 (183)
T 2obi_A 148 KWNFTKFLIDKN-G---CVVKRYGPMEEPLVIEKDLP 180 (183)
T ss_dssp CSTTCEEEECTT-S---CEEEEECTTSCTHHHHTTSG
T ss_pred cccceEEEECCC-C---CEEEEeCCCCCHHHHHHHHH
Confidence 346999999873 5 35667778888887766554
No 334
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=76.83 E-value=17 Score=33.49 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhCCCCCCccccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHh---h-ccceEee
Q 012346 151 EAMEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV---N-ENFVSWG 226 (465)
Q Consensus 151 ~~~~f~~~~~~~yg~~~p~f~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l---~-~~fv~w~ 226 (465)
+...|+..+...-|.. +.. .....+.+. .-..+..+|++..+.+..|...... | ..+.... . .++.+..
T Consensus 107 ~l~~fv~~~l~~~~~~-~~l-~~~~~~~~~--~~~~~~~vv~F~a~wC~~C~~~~p~-l--~~la~~~~~~~~~~v~~~~ 179 (243)
T 2hls_A 107 EIRALVEVIMRLSEDE-SGL-EDATKEALK--SLKGRVHIETIITPSCPYCPYAVLL-A--HMFAYEAWKQGNPVILSEA 179 (243)
T ss_dssp HHHHHHHHHHHHHTTC-CCC-CHHHHHHHH--HCCSCEEEEEEECSSCSSHHHHHHH-H--HHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHhccCCC-CCC-CHHHHHHHH--HcCCCcEEEEEECCCCCCcHHHHHH-H--HHHHHHcccccCCcEEEEE
Confidence 4456776665544432 122 111122221 2246778888999998888776532 2 1222222 1 3567777
Q ss_pred cccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 227 GSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 227 ~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.|++... .++..|++.++|.+.+ .|. ++ ..|..+.++|+..|...+..+
T Consensus 180 vd~~~~~--~~~~~~~V~~vPt~~i----~G~---~~--~~G~~~~~~l~~~l~~~~~~~ 228 (243)
T 2hls_A 180 VEAYENP--DIADKYGVMSVPSIAI----NGY---LV--FVGVPYEEDFLDYVKSAAEGR 228 (243)
T ss_dssp EETTTCH--HHHHHTTCCSSSEEEE----TTE---EE--EESCCCHHHHHHHHHHHHTTC
T ss_pred EECccCH--HHHHHcCCeeeCeEEE----CCE---EE--EeCCCCHHHHHHHHHHHhhcc
Confidence 7766433 4677899999999987 242 22 679999999999988877643
No 335
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=76.61 E-value=2.4 Score=35.66 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=35.7
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
..++|.+++++ |++. +.|+..|..++||++.|+.-.|.+..
T Consensus 78 ~e~~v~~L~~M-GF~~-~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSM-GFQR-NQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHH-TSCH-HHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 45789999995 9886 89999999999999999999987543
No 336
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=76.57 E-value=3.3 Score=42.71 Aligned_cols=99 Identities=9% Similarity=0.067 Sum_probs=66.5
Q ss_pred cCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh---ccceEeecccCchHHHHHHHhCCCCCCCcE
Q 012346 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~---~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i 249 (465)
.+|.+.+ ....|++||++..+.+..|..+...+ ..+.+-+. .++++...|.+..+ +.. |++..||++
T Consensus 366 ~~f~~~v---~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~---~~~-~~v~~~Pt~ 435 (504)
T 2b5e_A 366 KNHDEIV---NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHTEND---VRG-VVIEGYPTI 435 (504)
T ss_dssp TTHHHHH---HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGGGCC---CSS-CCCSSSSEE
T ss_pred ccHHHhh---ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCCccc---ccc-CCceecCeE
Confidence 4465554 45689999999999987777765432 23333333 26888888876544 223 899999999
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.++. .|... ...+..|..+.+++++.|...+.
T Consensus 436 ~~~~--~G~~~-~~~~~~G~~~~~~l~~~i~~~~~ 467 (504)
T 2b5e_A 436 VLYP--GGKKS-ESVVYQGSRSLDSLFDFIKENGH 467 (504)
T ss_dssp EEEC--CTTSC-CCCBCCSCCCHHHHHHHHHHHCT
T ss_pred EEEe--CCcee-cceEecCCCCHHHHHHHHHhcCC
Confidence 9883 25321 13456788899998888876543
No 337
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=73.75 E-value=5.9 Score=37.31 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=28.8
Q ss_pred HHHHhCCCC-------CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHH
Q 012346 236 KMSNSLKAS-------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (465)
Q Consensus 236 ~va~~l~~~-------~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~ 282 (465)
.+++.|++. .+|.++||++. | .+.....|.. +.++++..|...
T Consensus 107 ~ia~~ygv~~~~~g~~~~p~~fIID~d-G---~I~~~~~~~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 107 TVARRLGLLHAESATHTVRGVFIVDAR-G---VIRTMLYYPMELGRLVDEILRIVKAL 160 (249)
T ss_dssp HHHHHHTCCCTTCSSSCCEEEEEECTT-S---BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHHhCCccccCCCcccceEEEECCC-C---eEEEEEecCCcccchhHHHHHHHHHH
Confidence 466777776 89999999974 4 2344444543 578887777654
No 338
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=73.57 E-value=8.6 Score=34.98 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=21.7
Q ss_pred HHHHhCCCC------CCCcEEEEecCCCcceeeEEeeecCCC
Q 012346 236 KMSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPKS 271 (465)
Q Consensus 236 ~va~~l~~~------~~P~i~ii~~~~~~~~~vl~~i~G~~~ 271 (465)
.++..|++. .+|..+||++. | .++.+..|..+
T Consensus 144 ~~~~~ygv~~~~~g~~~P~~~lID~~-G---~I~~~~~g~~~ 181 (222)
T 3ztl_A 144 EISKAYGVFDEEDGNAFRGLFIIDPN-G---ILRQITINDKP 181 (222)
T ss_dssp HHHHHTTCBCTTTSSBCEEEEEECTT-S---EEEEEEEECTT
T ss_pred HHHHHcCCeecCCCCccceEEEECCC-C---eEEEEEecCCC
Confidence 456778887 78999999973 5 34555555543
No 339
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=73.39 E-value=4.2 Score=28.68 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=28.8
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhh
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISS 40 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~ 40 (465)
+++|+++++. |.+. +.|+..|..++||++.|..-
T Consensus 12 ~~~Ia~Lm~m-GFsr-~~ai~AL~~a~nnve~Aani 45 (52)
T 2ooa_A 12 DAKIAKLMGE-GYAF-EEVKRALEIAQNNVEVARSI 45 (52)
T ss_dssp HHHHHHHHHT-TCCH-HHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHH
Confidence 4788888875 7777 89999999999999999764
No 340
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=73.34 E-value=15 Score=33.02 Aligned_cols=58 Identities=9% Similarity=-0.042 Sum_probs=40.0
Q ss_pred hccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 219 NENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 219 ~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
..++.+...|.+. .-.+++.|++..||++.++.. |. ...+..|..+.+++...+...+
T Consensus 57 ~~~v~~~~vd~~~--~~~l~~~~~v~~~Ptl~~~~~--~~---~~~~~~G~~~~~~l~~~~~~~~ 114 (229)
T 2ywm_A 57 QDKIKLDIYSPFT--HKEETEKYGVDRVPTIVIEGD--KD---YGIRYIGLPAGLEFTTLINGIF 114 (229)
T ss_dssp TTTEEEEEECTTT--CHHHHHHTTCCBSSEEEEESS--SC---CCEEEESCCCTTHHHHHHHHHH
T ss_pred CCceEEEEecCcc--cHHHHHHcCCCcCcEEEEECC--Cc---ccceecCCccHHHHHHHHHHHH
Confidence 3456666666543 456899999999999999853 21 2345668888888777665544
No 341
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=72.55 E-value=5.8 Score=34.62 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=22.2
Q ss_pred cEEEEecCCCcceeeEEeeecCCChHHHHHHHHHH
Q 012346 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 248 ~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~ 282 (465)
..+||++. | .++.+..|..+++++...|...
T Consensus 149 ~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~~l 179 (181)
T 2p31_A 149 WKYLVAPD-G---KVVGAWDPTVSVEEVRPQITAL 179 (181)
T ss_dssp CEEEECTT-S---CEEEEECTTSCHHHHHHHHHTT
T ss_pred eEEEEcCC-C---CEEEEeCCCCCHHHHHHHHHHH
Confidence 78888863 5 3566777888888887776543
No 342
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=70.79 E-value=12 Score=32.72 Aligned_cols=33 Identities=6% Similarity=-0.081 Sum_probs=23.4
Q ss_pred CCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHH
Q 012346 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (465)
Q Consensus 245 ~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~ 281 (465)
.+|..+||++. | .++.+..|..+++++...|..
T Consensus 151 ~~P~~~lid~~-G---~i~~~~~g~~~~~~l~~~i~~ 183 (185)
T 2gs3_A 151 WNFTKFLIDKN-G---CVVKRYGPMEEPLVIEKDLPH 183 (185)
T ss_dssp SSCCEEEECTT-S---CEEEEECTTSCGGGGGGGHHH
T ss_pred ccceEEEECCC-C---CEEEeeCCCCCHHHHHHHHHH
Confidence 36889999873 5 356677788888877666654
No 343
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=70.72 E-value=29 Score=29.21 Aligned_cols=40 Identities=10% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCCCCCCcEEEEecCCCcceeeEEeeecCC--ChHHHHHHHHHHHH
Q 012346 241 LKASRYPFCAVVMPAANQRIALLQQVEGPK--SPEEMLMILQKVIE 284 (465)
Q Consensus 241 l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~--~~~~~~~~L~~~~~ 284 (465)
|.+...|.++||++. | .++.+..|.. +.+++++.|...+.
T Consensus 131 ~~~~~~p~~~lid~~-G---~i~~~~~g~~~~~~~~l~~~l~~ll~ 172 (174)
T 1xzo_A 131 DQVIHQSSFYLVGPD-G---KVLKDYNGVENTPYDDIISDVKSAST 172 (174)
T ss_dssp CSCCSCCEEEEECTT-S---EEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred CeeeeeeEEEEECCC-C---eEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 456778999999973 5 3566777875 47888888876653
No 344
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.81 E-value=3.4 Score=30.54 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=33.7
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCC-CHHHHHhhhhCCCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDW-DLELAISSFTSSNP 46 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W-~le~A~~~~~~~~~ 46 (465)
.+.|+|+.+ .|++. +.|+..|..+++ |+|.|+.-.|.+..
T Consensus 10 e~~v~~L~~-MGF~~-~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 10 PSLLEPLLA-MGFPV-HTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp CSSHHHHHH-TSCCH-HHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHH-cCCCH-HHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 457888888 59998 899999999865 99999999887643
No 345
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=69.71 E-value=7 Score=33.29 Aligned_cols=44 Identities=5% Similarity=-0.039 Sum_probs=28.5
Q ss_pred HHHHhCCCCC------CCcEEEEecCCCcceeeEEeeecC-----CChHHHHHHHHHHH
Q 012346 236 KMSNSLKASR------YPFCAVVMPAANQRIALLQQVEGP-----KSPEEMLMILQKVI 283 (465)
Q Consensus 236 ~va~~l~~~~------~P~i~ii~~~~~~~~~vl~~i~G~-----~~~~~~~~~L~~~~ 283 (465)
.+++.|++.. +|..+||++. |. ++.+..|. .+.+++++.|...+
T Consensus 112 ~~~~~~~v~~~~~g~~~p~~~lid~~-G~---i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 112 SFGEAFGVYIKELRLLARSVFVLDEN-GK---VVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp HHHHHTTCBBTTTCSBCCEEEEECTT-SC---EEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHhCCccccCCceeeEEEEEcCC-Cc---EEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 5667787765 5999999974 52 44444442 24578888776553
No 346
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=70.50 E-value=1.1 Score=36.99 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=16.2
Q ss_pred HHHHhCCCCCCCcEEEEec
Q 012346 236 KMSNSLKASRYPFCAVVMP 254 (465)
Q Consensus 236 ~va~~l~~~~~P~i~ii~~ 254 (465)
.+++.|++..+|.++||++
T Consensus 99 ~~~~~~~v~~~P~~~lid~ 117 (143)
T 2lus_A 99 NVTAKYGITGIPALVIVKK 117 (143)
Confidence 5777888999999999986
No 347
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=65.91 E-value=18 Score=31.14 Aligned_cols=94 Identities=9% Similarity=-0.019 Sum_probs=46.4
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHH-------------------HHHHhCCCC
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF-------------------KMSNSLKAS 244 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~-------------------~va~~l~~~ 244 (465)
++|++++++. ...+..|..-...+ ++...+|-+.++.+++.++++++.. .+++.|++.
T Consensus 32 ~Gk~vvl~f~~~~~cp~C~~e~~~l--~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~ 109 (164)
T 4gqc_A 32 RGRPAVLIFFPAAFSPVCTKELCTF--RDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVY 109 (164)
T ss_dssp TSSCEEEEECSCTTCCEECSSCEES--CCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCE
T ss_pred CCCEEEEEEeCCCCCCCcccchhhh--hhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCc
Confidence 5677777766 44443332211111 1111122233566666666655532 355556542
Q ss_pred ----------CCCcEEEEecCCCcceeeEEeee-----cCCChHHHHHHHHHHHH
Q 012346 245 ----------RYPFCAVVMPAANQRIALLQQVE-----GPKSPEEMLMILQKVIE 284 (465)
Q Consensus 245 ----------~~P~i~ii~~~~~~~~~vl~~i~-----G~~~~~~~~~~L~~~~~ 284 (465)
..|..+||++. | ++ ..... |..+.++++..|.....
T Consensus 110 ~~~~~~~~~~~~p~tflID~~-G-~I--~~~~~~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 110 HEDLKGLKMVAKRAVFIVKPD-G-TV--AYKWVTDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp EEEETTEEEEECCEEEEECTT-S-BE--EEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred ccccccCcCCeeeEEEEECCC-C-EE--EEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 35677788763 4 22 22211 23467888887766543
No 348
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=64.82 E-value=21 Score=30.96 Aligned_cols=21 Identities=5% Similarity=0.126 Sum_probs=14.6
Q ss_pred HHHHhCCCCC------------CCcEEEEecCCC
Q 012346 236 KMSNSLKASR------------YPFCAVVMPAAN 257 (465)
Q Consensus 236 ~va~~l~~~~------------~P~i~ii~~~~~ 257 (465)
.+++.|++.. .|..+||++. |
T Consensus 119 ~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~-G 151 (179)
T 3ixr_A 119 ILCKAFDVIKEKTMYGRQVIGIERSTFLIGPT-H 151 (179)
T ss_dssp HHHHHTTCEEEECCC--CEEEECCEEEEECTT-S
T ss_pred HHHHHcCCcccccccCcccCCcceEEEEECCC-C
Confidence 5666777642 5889999973 5
No 349
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.31 E-value=8.6 Score=27.21 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhh
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
+..|.++++. |.+. +.|+..|...+||+|.|..--
T Consensus 10 e~~I~~L~~l-GF~r-~~ai~AL~~a~nnve~Aa~iL 44 (53)
T 2d9s_A 10 SSEIERLMSQ-GYSY-QDIQKALVIAHNNIEMAKNIL 44 (53)
T ss_dssp HHHHHHHHHH-TCCH-HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHhcCCHHHHHHHH
Confidence 4567888775 7677 899999999999999997754
No 350
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=64.11 E-value=25 Score=32.26 Aligned_cols=49 Identities=10% Similarity=-0.083 Sum_probs=28.4
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF 235 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~ 235 (465)
.+||+++|++ .+...-|..=...+ ++...+|-+.++.++++++++.+..
T Consensus 51 ~GK~vVL~FyP~d~TpvCt~E~~~f--~~~~~~f~~~g~~vigiS~Ds~~sh 100 (216)
T 3sbc_A 51 KGKYVVLAFIPLAFTFVSPTEIIAF--SEAAKKFEEQGAQVLFASTDSEYSL 100 (216)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCeEEEEEEcCCCCCcCchhhhHH--HHhHHhhccCCceEEEeecCchhhH
Confidence 4799999999 33333332221111 1222334445899999999987653
No 351
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=63.59 E-value=35 Score=28.93 Aligned_cols=64 Identities=5% Similarity=0.039 Sum_probs=39.9
Q ss_pred hccceEeecccCchHHHHHHHhCCCCC--CCcEEEEec-CCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 219 NENFVSWGGSIRASEGFKMSNSLKASR--YPFCAVVMP-AANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 219 ~~~fv~w~~~v~~~Eg~~va~~l~~~~--~P~i~ii~~-~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
+..++|..+|....+..++...|+.+. .|.++|+.. ..+.+. ..-.|.++++.+.+-++.+++.
T Consensus 62 kgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~Ky---~~~~~~~t~~~i~~Fv~d~l~G 128 (147)
T 3bj5_A 62 KGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKY---KPESEELTAERITEFCHRFLEG 128 (147)
T ss_dssp TTTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSSCEEE---CCSCCCCCHHHHHHHHHHHHTT
T ss_pred CCceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEecccccccC---CCCcccCCHHHHHHHHHHHHcC
Confidence 345666667654345446778898874 999999986 323221 1113677887776666666653
No 352
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=63.18 E-value=45 Score=29.80 Aligned_cols=36 Identities=8% Similarity=-0.035 Sum_probs=26.6
Q ss_pred CCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 244 SRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 244 ~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
...|..+||++. | .++.+..|..+++++...|...+
T Consensus 171 ~~~p~tflID~~-G---~i~~~~~g~~~~~~l~~~I~~ll 206 (208)
T 2f8a_A 171 AWNFEKFLVGPD-G---VPLRRYSRRFQTIDIEPDIEALL 206 (208)
T ss_dssp CSTTCEEEECTT-S---CEEEEECTTSCGGGGHHHHHHHH
T ss_pred ccCceEEEEcCC-C---cEEEEeCCCCCHHHHHHHHHHHh
Confidence 345889999873 5 36677788888888887777655
No 353
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=62.82 E-value=20 Score=32.39 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=30.1
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 233 EGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 233 Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
+...+++.|+++.+|++++.+ |. ++.|..++++|...|....
T Consensus 169 ~~~~l~~~~gV~gtPt~v~~d---G~------~~~G~~~~~~l~~~l~~~~ 210 (216)
T 1eej_A 169 DHYALGVQLGVSGTPAVVLSN---GT------LVPGYQPPKEMKEFLDEHQ 210 (216)
T ss_dssp HHHHHHHHHTCCSSSEEECTT---SC------EEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCEEEEcC---Ce------EecCCCCHHHHHHHHHHhh
Confidence 456778899999999985433 32 3458888888887776554
No 354
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=62.75 E-value=29 Score=31.44 Aligned_cols=71 Identities=6% Similarity=0.018 Sum_probs=52.3
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFV 462 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~v 462 (465)
.+.++|.|+. +|+.+.-+...+++|..|++........+...+.|+- --+.+.. +.|.+++++..+.+|-|
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF--DGqRI~~---ddTPeDLdMEDGDtIDV 125 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY--DGIEIQA---DQTPEDLDMEDNDIIEA 125 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE--TTEECCS---SCCTTTTTCCTTEEEEE
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE--CCeecCC---CCCHHHcCCCCCCEEEE
Confidence 3578899985 9999999999999999999876655444455555433 2334432 66999999998888765
No 355
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=62.09 E-value=26 Score=32.29 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=27.0
Q ss_pred HHHHhCCCCC---------CCcEEEEecCCCcceeeEE---eeecCCChHHHHHHHHHHH
Q 012346 236 KMSNSLKASR---------YPFCAVVMPAANQRIALLQ---QVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 236 ~va~~l~~~~---------~P~i~ii~~~~~~~~~vl~---~i~G~~~~~~~~~~L~~~~ 283 (465)
.+++.|++.. .|..+||++. | ++.-.. .+.+..+.++++..|....
T Consensus 118 ~vak~yGv~~~~~~~~G~~~p~tfvID~d-G-~I~~~~~~~~~~~~pd~~evl~~L~~l~ 175 (224)
T 3keb_A 118 DFHKRYGVLITEYPLSGYTSPAIILADAA-N-VVHYSERLANTRDFFDFDAIEKLLQEGE 175 (224)
T ss_dssp THHHHTTCBCCSTTSTTCBCCEEEEECTT-C-BEEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCccccccccCCccCEEEEEcCC-C-EEEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence 4566676643 6899999873 4 222111 1223456788888776554
No 356
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=62.05 E-value=41 Score=29.24 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=25.8
Q ss_pred HHHhCCCC------CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHH
Q 012346 237 MSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (465)
Q Consensus 237 va~~l~~~------~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~ 282 (465)
+++.|++. ..|..+||++. | .++....|.. +.+++++.|...
T Consensus 103 ~~~~ygv~~~~~g~~~p~~~lID~~-G---~i~~~~~~~~~~~~~~~~l~~~l~~l 154 (186)
T 1n8j_A 103 LTRNFDNMREDEGLADRATFVVDPQ-G---IIQAIEVTAEGIGRDASDLLRKIKAA 154 (186)
T ss_dssp HHHHTTCEETTTTEECEEEEEECTT-S---BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHhCCccCCCCceeeEEEEECCC-C---eEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 55566665 36899999873 4 2444444543 467777766544
No 357
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=61.78 E-value=45 Score=27.79 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=27.4
Q ss_pred HHHHhCCCCCCC------cEEEEecCCCcceeeEEeeecCCC---hHHHHHHHHHHHH
Q 012346 236 KMSNSLKASRYP------FCAVVMPAANQRIALLQQVEGPKS---PEEMLMILQKVIE 284 (465)
Q Consensus 236 ~va~~l~~~~~P------~i~ii~~~~~~~~~vl~~i~G~~~---~~~~~~~L~~~~~ 284 (465)
.+++.|++...| ..+|| + .| .++.+..|..+ .+.+++.|...++
T Consensus 102 ~~~~~~gv~~~p~~g~~~~~~li-~-~G---~i~~~~~g~~~~~~~~~~~~~l~~~l~ 154 (159)
T 2a4v_A 102 EFIGLLGAKKTPLSGSIRSHFIF-V-DG---KLKFKRVKISPEVSVNDAKKEVLEVAE 154 (159)
T ss_dssp HHHHHHTCBSSSSSCBCCEEEEE-E-TT---EEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccccCCccceEEEE-c-CC---EEEEEEccCCccccHHHHHHHHHHHHH
Confidence 567788888777 77777 5 35 35555666543 3456666655554
No 358
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=61.04 E-value=10 Score=34.44 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=32.3
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhh
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
....|.++.+.||.. +-.|+..|..++||++.|+.-.
T Consensus 3 ~a~~VKeLRe~TGag-mmdCKkAL~e~~GD~ekAie~L 39 (196)
T 1aip_C 3 QMELIKKLREATGAG-MMDVKRALEDAGWDEEKAVQLL 39 (196)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 467899999999955 4799999999999999999764
No 359
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=57.24 E-value=43 Score=30.37 Aligned_cols=72 Identities=6% Similarity=0.025 Sum_probs=53.4
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCcccccCCCCCeeEEEE
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p~~~L~ve 463 (465)
.+.++|.|+. +|+.+.-+...+++|..|+.........+...++|+-. .+.+.. +.|.+++|+..+.+|-|-
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd--G~rI~~---~~TP~dL~MEdgD~Idv~ 98 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD--GIRIQA---DQTPEDLDMEDNDIIEAH 98 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET--TEECCT---TCCTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC--CEEcCC---CCCHHHcCCCCCCEEEEE
Confidence 3568899986 99999999999999999987665444445666666543 444543 569999999988887653
No 360
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=56.13 E-value=44 Score=32.86 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=50.0
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCC-CCcCeEEEeCCC----CcccCCCCccCcccccCCCCCeeEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCL-EVQNYSLVSNFP----RVVYSTDKFSLSLKEAGLHPQASLF 461 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~-~~~~f~L~t~fP----r~~~~~~~~~~TL~e~gL~p~~~L~ 461 (465)
....+.|.||||+...-.+..++|.++|++-|.....+ +...|.|...-+ .......+.++++.+-|..+.-.|+
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 34678899999999999999999999999999775433 345788865443 1122222346677776654444443
No 361
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=55.76 E-value=72 Score=28.78 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=26.6
Q ss_pred HHHHhCCC-----CCCCcEEEEecCCCcceeeEEeeecC----CChHHHHHHHHHH
Q 012346 236 KMSNSLKA-----SRYPFCAVVMPAANQRIALLQQVEGP----KSPEEMLMILQKV 282 (465)
Q Consensus 236 ~va~~l~~-----~~~P~i~ii~~~~~~~~~vl~~i~G~----~~~~~~~~~L~~~ 282 (465)
.+++.|++ ...|..+||++. | .|+....|. .+.++++..|...
T Consensus 131 ~~~~~ygv~~~~g~~~P~~~lID~~-G---~I~~~~~g~~~~~~~~~ell~~l~~L 182 (221)
T 2c0d_A 131 DISKNYNVLYDNSFALRGLFIIDKN-G---CVRHQTVNDLPIGRNVQEVLRTIDSI 182 (221)
T ss_dssp HHHHHTTCEETTTEECEEEEEECTT-S---BEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HHHHHcCCcccCCCccceEEEECCC-C---eEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 45666777 368999999873 4 234444443 3567777766654
No 362
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=55.67 E-value=43 Score=32.38 Aligned_cols=48 Identities=10% Similarity=0.005 Sum_probs=28.2
Q ss_pred HHHHhCCC----CCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 236 KMSNSLKA----SRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 236 ~va~~l~~----~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.+++.|++ ..+|..+||++. |.=..++..+...-.+++++..|+....
T Consensus 88 ~v~~~ygv~~~~~~~r~tfiId~~-G~i~~~~~~v~~~~h~~~~l~~~~~~~~ 139 (322)
T 4eo3_A 88 ILHEFFNVLENGKTVRSTFLIDRW-GFVRKEWRRVKVEGHVQEVKEALDRLIE 139 (322)
T ss_dssp HHHHHTTCEETTEECCEEEEECTT-SBEEEEEESCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCcCccEEEEECCC-CEEEEEEeCCCccccHHHHHHHHhhhch
Confidence 56777877 357788899873 5312233322222235778877776654
No 363
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=55.25 E-value=55 Score=30.00 Aligned_cols=49 Identities=12% Similarity=0.002 Sum_probs=29.1
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF 235 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~ 235 (465)
.+||+++|++ .+...-|..=+..+ ++...+|-+.++.++|+++++.+..
T Consensus 55 ~GK~vVL~FyP~d~TpvCt~E~~~f--~~~~~eF~~~g~~vigiS~Ds~~sh 104 (219)
T 3tue_A 55 KGKWVVLFFYPLDFTFVCPTEVIAF--SDSVSRFNELNCEVLACSIDSEYAH 104 (219)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHHH--HTTHHHHHTTTEEEEEEESSCHHHH
T ss_pred CCCEEEEEEecccCCCCCchhHhhH--HHHHhhhccCCcEEEEeeCCchhhH
Confidence 5799999999 33333333222111 1223344445899999999987643
No 364
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=53.40 E-value=13 Score=35.80 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=32.3
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhh
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~ 42 (465)
...|.++.+.||.. +-.|+..|..++||++.|+.-.=
T Consensus 5 a~~VKeLRe~TGag-mmdCKKAL~e~~GD~ekAie~LR 41 (291)
T 1xb2_B 5 KELLMKLRRKTGYS-FINCKKALETCGGDLKQAESWLH 41 (291)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 46789999999955 57999999999999999998764
No 365
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=52.15 E-value=31 Score=23.83 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=35.3
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
++.+.|-|.+..+..-+..+.=|++.|-|+-.||...+.-
T Consensus 10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 5778999999998887899999999999999999988753
No 366
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=51.03 E-value=37 Score=28.67 Aligned_cols=48 Identities=15% Similarity=-0.005 Sum_probs=20.6
Q ss_pred cCcEEEEEEe-CCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHH
Q 012346 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG 234 (465)
Q Consensus 185 e~K~LlVyL~-~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg 234 (465)
.+|+++|++. ...+..|..-...+ .....++-+.++.+++.++++++.
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~e~~~l--~~~~~~~~~~~~~~v~vs~d~~~~ 77 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTKEMCTF--RDSMAKFNQVNAVVLGISVDPPFS 77 (157)
T ss_dssp TTSCEEEEECSCTTCCC------CC--SCGGGGGGGCSSEEEEEESSCHHH
T ss_pred CCCeEEEEecCCCCCCccccchhhc--ccccccccccCceEeeecccchhH
Confidence 4567777665 44444443322111 111112223356666766666554
No 367
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=50.70 E-value=67 Score=27.29 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=41.3
Q ss_pred HHHHhhc---cceEeeccc-C-chHHHHHHHhCCC---------CCCCcEEEEecCCCcceeeEEeeecC-CChHHHHHH
Q 012346 214 LAAFVNE---NFVSWGGSI-R-ASEGFKMSNSLKA---------SRYPFCAVVMPAANQRIALLQQVEGP-KSPEEMLMI 278 (465)
Q Consensus 214 v~~~l~~---~fv~w~~~v-~-~~Eg~~va~~l~~---------~~~P~i~ii~~~~~~~~~vl~~i~G~-~~~~~~~~~ 278 (465)
+.+|+++ ++..|..-. . ..+...+++.|+. ...|.++||++. |. +.....|. .+++++...
T Consensus 81 ~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~-G~---i~~~~~g~~~~~~~i~~~ 156 (170)
T 3me7_A 81 IKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPE-LQ---IKDYIYGVNYNYLEFVNA 156 (170)
T ss_dssp HHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTT-SB---EEEEEESSSCCHHHHHHH
T ss_pred HHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCC-Ce---EEEEEeCCCCCHHHHHHH
Confidence 4455554 445564322 2 3455677877664 345789999984 52 44555675 678888888
Q ss_pred HHHHHH
Q 012346 279 LQKVIE 284 (465)
Q Consensus 279 L~~~~~ 284 (465)
|..+..
T Consensus 157 l~~~~~ 162 (170)
T 3me7_A 157 LRLARG 162 (170)
T ss_dssp HHHHTT
T ss_pred HHHhhc
Confidence 877654
No 368
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=50.39 E-value=88 Score=26.39 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHH
Q 012346 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 235 ~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~ 284 (465)
.+.++.+++..+|+++| . |. .+.|..+.+.|...|..++.
T Consensus 134 ~~~a~~~gv~gtPt~~i-~---g~------~~~G~~~~~~l~~~i~~~l~ 173 (175)
T 3gyk_A 134 MALAQKLGFNGTPSFVV-E---DA------LVPGFVEQSQLQDAVDRARK 173 (175)
T ss_dssp HHHHHHHTCCSSSEEEE-T---TE------EECSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccCCEEEE-C---CE------EeeCCCCHHHHHHHHHHHHh
Confidence 35667899999998876 2 31 34588899988888877664
No 369
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=49.74 E-value=3.5 Score=37.35 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCCCCcCeEEEeCCCCcccCCCCccCccc
Q 012346 390 QVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCLEVQNYSLVSNFPRVVYSTDKFSLSLK 450 (465)
Q Consensus 390 ~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~~~~~f~L~t~fPr~~~~~~~~~~TL~ 450 (465)
.|-||.++|+.+.-....++||.+|..-|.....+++....|+ |--+.+.+ +.||.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLI--f~GK~LeD---~~TLs 57 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLV--NNGFIAPN---TELVT 57 (189)
T ss_dssp -------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEE--ecCeECCC---CCccc
Confidence 4778999999888889999999999999988766666666776 44566643 45665
No 370
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=48.49 E-value=75 Score=28.31 Aligned_cols=43 Identities=16% Similarity=0.072 Sum_probs=26.3
Q ss_pred HHHHhCCCC------CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHHH
Q 012346 236 KMSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (465)
Q Consensus 236 ~va~~l~~~------~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~~ 282 (465)
.+++.|++. ..|..+||++. | .++....|.. +.++++..|...
T Consensus 123 ~~~~~ygv~~~~~g~~~p~~~lID~~-G---~I~~~~~g~~~~~~~~~ell~~l~~l 175 (211)
T 2pn8_A 123 QISKDYGVYLEDSGHTLRGLFIIDDK-G---ILRQITLNDLPVGRSVDETLRLVQAF 175 (211)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECTT-S---BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHHcCCcccCCCcccceEEEECCC-C---EEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 456667763 58888898873 4 2344444432 557777766554
No 371
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=48.21 E-value=75 Score=27.05 Aligned_cols=20 Identities=5% Similarity=-0.027 Sum_probs=15.1
Q ss_pred HHHHhCCCCCC---------CcEEEEecC
Q 012346 236 KMSNSLKASRY---------PFCAVVMPA 255 (465)
Q Consensus 236 ~va~~l~~~~~---------P~i~ii~~~ 255 (465)
.+++.|++... |..+||++.
T Consensus 110 ~~~~~~gv~~~~~~~~g~~~p~~~lid~~ 138 (175)
T 1xvq_A 110 SFGEDYGVTIADGPMAGLLARAIVVIGAD 138 (175)
T ss_dssp SHHHHTTCBBCSSTTTTSBCSEEEEECTT
T ss_pred HHHHHhCCcccccccCCcccceEEEECCC
Confidence 46677887665 899999973
No 372
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=46.63 E-value=1.4e+02 Score=26.72 Aligned_cols=35 Identities=6% Similarity=-0.080 Sum_probs=26.3
Q ss_pred CcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 247 PFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 247 P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
|..+||++. | .++.+..|..+++++...|...+.+
T Consensus 178 pttfLID~~-G---~vv~~~~g~~~~~~l~~~I~~ll~~ 212 (215)
T 2i3y_A 178 FEKFLVGPD-G---IPVMRWSHRATVSSVKTDILAYLKQ 212 (215)
T ss_dssp TCEEEECTT-S---CEEEEECTTSCHHHHHHHHHHHGGG
T ss_pred ceEEEECCC-C---eEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 678888873 5 3667777888898888888777643
No 373
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=45.41 E-value=79 Score=29.31 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=12.3
Q ss_pred HHHHhCCCC------CCCcEEEEec
Q 012346 236 KMSNSLKAS------RYPFCAVVMP 254 (465)
Q Consensus 236 ~va~~l~~~------~~P~i~ii~~ 254 (465)
.+++.|++. .+|..+||++
T Consensus 166 ~va~~ygv~~~~~g~~~p~tflID~ 190 (254)
T 3tjj_A 166 QISKDYGVYLEDSGHTLRGLFIIDD 190 (254)
T ss_dssp HHHHHHTCEETTTTEECEEEEEECT
T ss_pred HHHHHcCCccccCCCccceEEEECC
Confidence 445556553 4688888886
No 374
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=44.73 E-value=18 Score=36.14 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=35.1
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
..++|.+++++ |++. +.|+..|..++||++.|+.-.|.|
T Consensus 168 ~~~~i~~l~~M-Gf~~-~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 168 YETMLTEIMSM-GYER-ERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp HHHHHHHHHTT-TCCS-HHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred hHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHhC
Confidence 56788888876 8888 899999999999999999999876
No 375
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=43.72 E-value=44 Score=26.11 Aligned_cols=58 Identities=7% Similarity=-0.063 Sum_probs=32.9
Q ss_pred cEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCch-H--HHHHHHhCCCCCCCcEEEEe
Q 012346 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS-E--GFKMSNSLKASRYPFCAVVM 253 (465)
Q Consensus 187 K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~-E--g~~va~~l~~~~~P~i~ii~ 253 (465)
+.++| +..+.+..|..+.. +.+-+...|.+...+.+.. + ...++..|++.++|.+ ++.
T Consensus 20 ~~vv~-f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~-~~~ 80 (116)
T 2e7p_A 20 APVVV-FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNV-FIG 80 (116)
T ss_dssp SSEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EET
T ss_pred CCEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEE-EEC
Confidence 44555 66676655544331 2222334566666665432 1 1346778999999999 543
No 376
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=42.93 E-value=1e+02 Score=28.18 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=25.5
Q ss_pred HHHHhCCCC------CCCcEEEEecCCCcceeeEEeeecCC----ChHHHHHHHHH
Q 012346 236 KMSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQK 281 (465)
Q Consensus 236 ~va~~l~~~------~~P~i~ii~~~~~~~~~vl~~i~G~~----~~~~~~~~L~~ 281 (465)
.+++.|++. .+|..+||++. | + |..+..|.. +.++++..|..
T Consensus 152 ~v~~~ygv~~~~~g~~~p~~flID~~-G-~--I~~~~~~~~~~~~~~~eil~~l~~ 203 (240)
T 3qpm_A 152 QISKDYGVYLEDQGHTLRGLFIIDEK-G-V--LRQITMNDLPVGRSVDETLRLVQA 203 (240)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECTT-S-B--EEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HHHHHhCCccccCCCccceEEEEcCC-C-e--EEEEEecCCCCCCCHHHHHHHHHH
Confidence 567778876 68999999973 4 2 333333432 35666665543
No 377
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=42.10 E-value=25 Score=28.35 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhh
Q 012346 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISS 40 (465)
Q Consensus 5 ~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~ 40 (465)
.+.+.--++=||++. +.|+..|..|+||+-.||-.
T Consensus 66 ~edi~lv~~q~~vs~-~~A~~aL~~~~gDiv~Ai~~ 100 (102)
T 1tr8_A 66 EDDIELVMNQTGASR-EDATRALQETGGDLAEAIMR 100 (102)
T ss_dssp HHHHHHHHHHHCCCH-HHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHcCCCHHHHHHH
Confidence 355666777799888 89999999999999999853
No 378
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=41.65 E-value=48 Score=24.91 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=35.2
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~ 46 (465)
..++|.|-+++.--=...-+...|..++-|+|.+|...+++.-
T Consensus 13 l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~L 55 (71)
T 2di0_A 13 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERL 55 (71)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCC
Confidence 4577888888875433466999999999999999999999754
No 379
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=39.42 E-value=42 Score=28.15 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHhcCCCCCcCeEEE-eCCCCcccCCC---CccCcccccCCCCCeeEEEE
Q 012346 409 AVVQLLYDYVDSLGCLEVQNYSLV-SNFPRVVYSTD---KFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 409 ~tl~~l~~fv~~~~~~~~~~f~L~-t~fPr~~~~~~---~~~~TL~e~gL~p~~~L~ve 463 (465)
.||.+|.+.+.....++ ..|.+. ++=-|-.|..+ ...+||.++|+..+..|+|.
T Consensus 20 ~TL~dLV~~l~~~~gy~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 20 MKLSDFVVLIREKYSYP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp CBHHHHHHHHHHHHTCC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred cCHHHHHHHHHHhcCCC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 48999998886533323 478876 33334445432 25899999999999999886
No 380
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=39.38 E-value=2e+02 Score=25.40 Aligned_cols=36 Identities=8% Similarity=-0.026 Sum_probs=26.5
Q ss_pred CcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 247 PFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 247 P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
|..+||++. | .++.+..|..+++++...|...+.+.
T Consensus 160 ~ttflID~~-G---~i~~~~~g~~~~~~l~~~I~~ll~~~ 195 (207)
T 2r37_A 160 FEKFLVGPD-G---IPIMRWHHRTTVSNVKMDILSYMRRQ 195 (207)
T ss_dssp TCEEEECTT-S---CEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred ceEEEECCC-C---cEEEEECCCCCHHHHHHHHHHHHhhc
Confidence 678888873 5 35677778888988888887776543
No 381
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=39.13 E-value=28 Score=28.78 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=30.8
Q ss_pred HHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCC
Q 012346 6 DKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (465)
Q Consensus 6 ~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~ 44 (465)
++|.+|.++ |++. +.|+..|..++.|++.||.-.|..
T Consensus 78 ~~v~~L~eM-GF~~-~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 78 QLMSKFKEM-GFEL-KDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHT-TCCH-HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 457777775 7777 899999999999999999987753
No 382
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=37.93 E-value=18 Score=25.75 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=31.1
Q ss_pred chHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhh
Q 012346 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (465)
Q Consensus 3 ~~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~ 42 (465)
++.+.+.+++++.-.=|.+....+|..++++++.||...+
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678899999999887778999999999999999987654
No 383
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=37.24 E-value=1.2e+02 Score=25.23 Aligned_cols=41 Identities=7% Similarity=-0.010 Sum_probs=25.3
Q ss_pred HHHHhCCCCC------CCcEEEEecCCCcceeeEEeee-----cCCChHHHHHHHH
Q 012346 236 KMSNSLKASR------YPFCAVVMPAANQRIALLQQVE-----GPKSPEEMLMILQ 280 (465)
Q Consensus 236 ~va~~l~~~~------~P~i~ii~~~~~~~~~vl~~i~-----G~~~~~~~~~~L~ 280 (465)
.+++.|++.. .|..+||++. | + ++.... +..+.+++++.|.
T Consensus 113 ~~~~~~gv~~~~~g~~~p~~~liD~~-G-~--i~~~~~~~~~~~~~~~~~il~~l~ 164 (166)
T 3p7x_A 113 SFGENYGVVMEELRLLARAVFVLDAD-N-K--VVYKEIVSEGTDFPDFDAALAAYK 164 (166)
T ss_dssp HHHHHHTCEETTTTEECCEEEEECTT-C-B--EEEEEECSBTTSCCCHHHHHHHHH
T ss_pred HHHHHhCCccccCCceeeEEEEECCC-C-e--EEEEEEcCCcccCCCHHHHHHHHh
Confidence 5677777764 8999999973 5 2 333322 2335577777664
No 384
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.71 E-value=26 Score=25.57 Aligned_cols=42 Identities=7% Similarity=0.099 Sum_probs=33.3
Q ss_pred hHHHHHHhHhhhCCCChhHHHHHHhhCCCCHHHHHhhhhCCCCC
Q 012346 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (465)
Q Consensus 4 ~~~~l~qf~~it~~~~~~~a~~~L~~~~W~le~A~~~~~~~~~~ 47 (465)
..+.|.+..+ .|+.. +.|+..|..++-|+|.|+.=.|....|
T Consensus 19 e~e~V~~Lvs-MGFs~-~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 19 ERQCVETVVN-MGYSY-ECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHH-HHCCH-HHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHH-cCCCH-HHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4566666664 46777 899999999999999999998876543
No 385
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=34.21 E-value=1.5e+02 Score=28.89 Aligned_cols=74 Identities=9% Similarity=0.002 Sum_probs=55.1
Q ss_pred eEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCC----CCCcCeEEEe--CCCCcccCCCCccCcccccCCCCCeeEE
Q 012346 388 VTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGC----LEVQNYSLVS--NFPRVVYSTDKFSLSLKEAGLHPQASLF 461 (465)
Q Consensus 388 ~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~----~~~~~f~L~t--~fPr~~~~~~~~~~TL~e~gL~p~~~L~ 461 (465)
...+.|+++ +...+-+|.++.||.++...|..... .+..+|-|-- ..|++-.-.+ ..+||...|+..+..|.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~ 80 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTME 80 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEE
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceee
Confidence 357888999 77789999999999999999855431 2467888766 3466644333 36799999999888776
Q ss_pred EE
Q 012346 462 VE 463 (465)
Q Consensus 462 ve 463 (465)
..
T Consensus 81 ~~ 82 (371)
T 3ivf_A 81 YR 82 (371)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 386
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=32.26 E-value=1.1e+02 Score=29.06 Aligned_cols=68 Identities=15% Similarity=0.024 Sum_probs=46.0
Q ss_pred CCeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCC-CCcCeEEEeCCCCcccCCCCccCcccccCCC
Q 012346 386 PNVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCL-EVQNYSLVSNFPRVVYSTDKFSLSLKEAGLH 455 (465)
Q Consensus 386 ~~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~-~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~ 455 (465)
...+.+.|.|+|| .+.-.+..++|.++|++-|.....+ +..-|-|.-. ........+.+++|.+.+..
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~i~~q~~~ 88 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKKVLDHDVS 88 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSBGGGSSCC
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccCHHHcCCC
Confidence 3568899999999 6889999999999999998765433 3455766543 23222223446677776543
No 387
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=32.15 E-value=66 Score=29.40 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=31.7
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 235 ~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.++++.++++.+|++++... .| ++ .++.|..++++|...|......
T Consensus 189 ~~l~~~~gv~gtPt~vi~~~-~G-~~---~~~~G~~~~~~L~~~l~~~~~~ 234 (241)
T 1v58_A 189 EKLMDDLGANVTPAIYYMSK-EN-TL---QQAVGLPDQKTLNIIMGNKLQH 234 (241)
T ss_dssp HHHHHHHTCCSSCEEEEEET-TT-EE---EEEESSCCHHHHHHHTTC----
T ss_pred HHHHHHcCCCCCCEEEEECC-CC-CE---EEecCCCCHHHHHHHHHHHHHh
Confidence 46678899999999988764 24 22 3567999999888877665544
No 388
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=31.31 E-value=2.9e+02 Score=26.19 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=29.1
Q ss_pred HhCCCC-CCCcEEEEecCCCcceee-EEeeecCCChHHHHHHHHHHHH
Q 012346 239 NSLKAS-RYPFCAVVMPAANQRIAL-LQQVEGPKSPEEMLMILQKVIE 284 (465)
Q Consensus 239 ~~l~~~-~~P~i~ii~~~~~~~~~v-l~~i~G~~~~~~~~~~L~~~~~ 284 (465)
+.+++. .+|.++|+..+.+.+... .....|..+++.+.+-++.+++
T Consensus 299 ~~~gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~ 346 (350)
T 1sji_A 299 KTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLS 346 (350)
T ss_dssp HHCCSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHT
T ss_pred hhcCCCccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhc
Confidence 677776 589999998854533221 1111357788877777766654
No 389
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=30.45 E-value=43 Score=30.80 Aligned_cols=10 Identities=10% Similarity=0.139 Sum_probs=7.1
Q ss_pred CCCcEEEEec
Q 012346 245 RYPFCAVVMP 254 (465)
Q Consensus 245 ~~P~i~ii~~ 254 (465)
..|.++||++
T Consensus 126 ~~p~~fiID~ 135 (233)
T 2v2g_A 126 TCRAVFIIGP 135 (233)
T ss_dssp ECEEEEEECT
T ss_pred ccceEEEECC
Confidence 4677777776
No 390
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=29.79 E-value=76 Score=28.30 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHH
Q 012346 233 EGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (465)
Q Consensus 233 Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~ 280 (465)
+...+++.|+++.+|++++.+ |. ++.|..++++|...|.
T Consensus 169 ~~~~l~~~~gV~gTPt~vi~n---G~------~~~G~~~~~~l~~~l~ 207 (211)
T 1t3b_A 169 KHYELGIQFGVRGTPSIVTST---GE------LIGGYLKPADLLRALE 207 (211)
T ss_dssp HHHHHHHHHTCCSSCEEECTT---SC------CCCSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCEEEEeC---CE------EecCCCCHHHHHHHHH
Confidence 345667889999999988732 42 3568888888777664
No 391
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=28.97 E-value=59 Score=25.24 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=45.4
Q ss_pred cEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh---ccceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeE
Q 012346 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (465)
Q Consensus 187 K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~---~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl 263 (465)
+..+|++..+.+..|... ..+|+ .++-+.-.|+++++...++..|+ .+.|.+ +++ |. . +
T Consensus 16 ~~~v~~f~~~~C~~C~~~----------~~~L~~l~~~i~~~~vdi~~~~~~el~~~~g-~~vP~l-~~~---g~-~--~ 77 (100)
T 1wjk_A 16 LPVLTLFTKAPCPLCDEA----------KEVLQPYKDRFILQEVDITLPENSTWYERYK-FDIPVF-HLN---GQ-F--L 77 (100)
T ss_dssp CCEEEEEECSSCHHHHHH----------HHHTSTTSSSSEEEEEETTSSTTHHHHHHSS-SSCSEE-EES---SS-E--E
T ss_pred CCEEEEEeCCCCcchHHH----------HHHHHHhhhCCeEEEEECCCcchHHHHHHHC-CCCCEE-EEC---CE-E--E
Confidence 345666676665444333 34444 34666678887555677888999 999965 333 43 2 1
Q ss_pred EeeecCCChHHHHHHHHHH
Q 012346 264 QQVEGPKSPEEMLMILQKV 282 (465)
Q Consensus 264 ~~i~G~~~~~~~~~~L~~~ 282 (465)
. .|..+++++...|...
T Consensus 78 -~-~~g~~~~~l~~~l~~~ 94 (100)
T 1wjk_A 78 -M-MHRVNTSKLEKQLRKL 94 (100)
T ss_dssp -E-ESSCCHHHHHHHHHSS
T ss_pred -E-ecCCCHHHHHHHHHHH
Confidence 1 2457777776666543
No 392
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=28.79 E-value=1.2e+02 Score=28.47 Aligned_cols=66 Identities=17% Similarity=0.067 Sum_probs=42.8
Q ss_pred EEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCC-CCcCeEEEeCCCCcccCCCCccCcccccCCC
Q 012346 389 TQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCL-EVQNYSLVSNFPRVVYSTDKFSLSLKEAGLH 455 (465)
Q Consensus 389 ~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~-~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~ 455 (465)
+.+.|.|+|| .+.-.+.+++|.++|++-|.....+ +..-|.|.-.-+.......+.++++.+.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~ 68 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVR 68 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBC
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccC
Confidence 5788999999 5778889999999999998765433 3345776532222222122346667766543
No 393
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=28.44 E-value=2.1e+02 Score=25.60 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=17.5
Q ss_pred CCcEEEEecCCCcceeeEEeeecC---------CChHHHHHHHHH
Q 012346 246 YPFCAVVMPAANQRIALLQQVEGP---------KSPEEMLMILQK 281 (465)
Q Consensus 246 ~P~i~ii~~~~~~~~~vl~~i~G~---------~~~~~~~~~L~~ 281 (465)
.|+.+|| + .| .|.....|. .++++++..|..
T Consensus 125 ~p~t~li-~-~G---~i~~~~~~~~~~~~~~~~~~~~~il~~l~~ 164 (241)
T 1nm3_A 125 WRYSMLV-K-NG---VVEKMFIEPNEPGDPFKVSDADTMLKYLAP 164 (241)
T ss_dssp CCEEEEE-E-TT---EEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred eeEEEEE-E-CC---EEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence 4777777 5 34 233344443 356777777653
No 394
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.36 E-value=1.3e+02 Score=31.62 Aligned_cols=69 Identities=17% Similarity=0.055 Sum_probs=45.0
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCC-CCcCeEEEeCCCCcccCCCCccCcccccCCCC
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCL-EVQNYSLVSNFPRVVYSTDKFSLSLKEAGLHP 456 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~-~~~~f~L~t~fPr~~~~~~~~~~TL~e~gL~p 456 (465)
..+.+.|.|+|| .+.-.+.+++|.++|++-|.....+ ....|.|.-.-+.......+.+++|.+.+..+
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~ 72 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKK 72 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCC
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccC
Confidence 457899999999 5778889999999999998765433 33456664322332222234466777665443
No 395
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=26.56 E-value=75 Score=28.54 Aligned_cols=102 Identities=10% Similarity=0.091 Sum_probs=69.2
Q ss_pred cccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCchHHHHHHHhCCCCCCCcEE
Q 012346 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (465)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ 250 (465)
--+++.+.++.+|+.+|..+| |- .++..+=.++.-++||.+++=..|.--+..-..+.++.++..+.|-++
T Consensus 39 ~i~~l~~~v~~lk~~~K~v~V--h~-------Dli~Gls~d~~ai~fL~~~~~pdGIIsTk~~~i~~Ak~~gL~tIqR~F 109 (192)
T 3kts_A 39 HVAQLKALVKYAQAGGKKVLL--HA-------DLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLF 109 (192)
T ss_dssp ETTTHHHHHHHHHHTTCEEEE--EG-------GGEETCCCSHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCEEEEEEE
T ss_pred cHHHHHHHHHHHHHcCCeEEE--ec-------CchhccCCcHHHHHHHHhCCCCCEEEeCcHHHHHHHHHCCCeEEEEEE
Confidence 346799999999999995555 52 344555567888899997665666655677888889999999999988
Q ss_pred EEecCC---------CcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 251 VVMPAA---------NQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 251 ii~~~~---------~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
+|+..+ +.+-..+..+.|.+ | +++..+.+.+
T Consensus 110 liDS~al~~~~~~i~~~~PD~iEiLPGi~-p-~iI~~i~~~~ 149 (192)
T 3kts_A 110 MIDSSAYNKGVALIQKVQPDCIELLPGII-P-EQVQKMTQKL 149 (192)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEEECTTC-H-HHHHHHHHHH
T ss_pred EEEcchHHHHHHHHhhcCCCEEEECCchh-H-HHHHHHHHhc
Confidence 887321 11222344455644 3 4666665543
No 396
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=26.43 E-value=1e+02 Score=29.14 Aligned_cols=46 Identities=20% Similarity=0.003 Sum_probs=36.0
Q ss_pred CeEEEEEECCCCceEEEEecCCCcHHHHHHHHHhcCCC-CCcCeEEE
Q 012346 387 NVTQVLVRFPNGERKERRFHSTAVVQLLYDYVDSLGCL-EVQNYSLV 432 (465)
Q Consensus 387 ~~~~i~iRlP~G~r~~rrF~~~~tl~~l~~fv~~~~~~-~~~~f~L~ 432 (465)
....+.|.||||+...-.+..++|.++|++-|.....+ +..-|-|.
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~ 62 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLA 62 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEE
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEE
Confidence 45778999999999999999999999999999765433 33446654
No 397
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=25.31 E-value=1e+02 Score=26.58 Aligned_cols=62 Identities=11% Similarity=-0.143 Sum_probs=43.0
Q ss_pred cCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhh--ccceEeecccCchHHHHHHHhCC---CCCCCcEEEEec
Q 012346 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLK---ASRYPFCAVVMP 254 (465)
Q Consensus 185 e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~--~~fv~w~~~v~~~Eg~~va~~l~---~~~~P~i~ii~~ 254 (465)
.+|+.+|++..+.+.+|..+. |.+.++-. .++.+..++++ +...++..|. +..+|+++++..
T Consensus 53 ~~k~vvv~F~A~WC~pC~~~~------P~l~~l~~~~~~v~~~~v~~d--~~~~~~~~~~~~~v~~iPt~i~~~~ 119 (167)
T 1z6n_A 53 ERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIISKG--RAEDDLRQRLALERIAIPLVLVLDE 119 (167)
T ss_dssp CSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEECHH--HHHHHTTTTTTCSSCCSSEEEEECT
T ss_pred CCCEEEEEEECCCChhHHHHH------HHHHHHHHHCCCcEEEEEECC--CCHHHHHHHHHcCCCCcCeEEEECC
Confidence 578999999999888887664 33333333 25666666654 3445666676 899999999986
No 398
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=24.81 E-value=3.6e+02 Score=24.19 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=32.3
Q ss_pred ceEeecccCchHHHHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHH
Q 012346 222 FVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (465)
Q Consensus 222 fv~w~~~v~~~Eg~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~ 283 (465)
+.|...|++ +.-.++..|+++.+|.+.++. | ..+..|..+.+++...+...+
T Consensus 65 v~~~~vd~d--~~~~~~~~~gv~~~Pt~~i~~---g-----~~~~~G~~~~~~l~~fv~~~l 116 (243)
T 2hls_A 65 LKLNVYYRE--SDSDKFSEFKVERVPTVAFLG---G-----EVRWTGIPAGEEIRALVEVIM 116 (243)
T ss_dssp EEEEEEETT--TTHHHHHHTTCCSSSEEEETT---T-----TEEEESCCCTTHHHHHHHHHH
T ss_pred eEEEEecCC--cCHHHHHhcCCCcCCEEEEEC---C-----ceeEcCCCcHHHHHHHHHHHH
Confidence 444445544 334688999999999999872 3 224456666666555554444
No 399
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=24.42 E-value=1.3e+02 Score=25.19 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=53.4
Q ss_pred EEEEEEeCC---CCCCchHHHhhcCCCHHHHHHhhccceEeec---------ccCchHHHHHHHhCCCCCCCcEEEEecC
Q 012346 188 LLFVYLHSP---DHPDTPAFCEGTLCNEVLAAFVNENFVSWGG---------SIRASEGFKMSNSLKASRYPFCAVVMPA 255 (465)
Q Consensus 188 ~LlVyL~~~---~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~---------~v~~~Eg~~va~~l~~~~~P~i~ii~~~ 255 (465)
.=++|++-| -|.+|..-.+.+||..+=.++... ++.++ ...=.+..++++.|+++.+|+++| .
T Consensus 42 v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~--~~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~-- 116 (147)
T 3gv1_A 42 VTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTD--WMRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF-P-- 116 (147)
T ss_dssp EEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHH--HHHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC-T--
T ss_pred eEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHH--HHhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE-E--
Confidence 345555544 256677777788887543333322 11111 111234677889999999999987 2
Q ss_pred CCcceeeEEeeecCCChHHHHHHHHHHHHh
Q 012346 256 ANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (465)
Q Consensus 256 ~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~ 285 (465)
.|. .+.|..++++|...|..+..+
T Consensus 117 nG~------~i~G~~~~~~l~~~i~~~~~~ 140 (147)
T 3gv1_A 117 NGR------TQSGYSPMPQLEEIIRKNQQE 140 (147)
T ss_dssp TSC------EEESCCCTTHHHHHHHHTSCC
T ss_pred CCE------EeeCCCCHHHHHHHHHHHHHh
Confidence 242 356888999998888766543
No 400
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=22.70 E-value=2.1e+02 Score=24.85 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=34.2
Q ss_pred HHHHHhCCCCCCCcEEEEecCCCcceeeEEeeecCCChHHHHHHHHHHHHhh
Q 012346 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (465)
Q Consensus 235 ~~va~~l~~~~~P~i~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L~~~~~~~ 286 (465)
.+.+..+++...|+++|+.. |. .+..+.|..+.+.|...|...+.++
T Consensus 166 ~~~a~~~gv~g~Pt~~i~~~--G~---~~~~~~G~~~~~~l~~~l~~~~~~~ 212 (216)
T 2in3_A 166 FQRVAQWGISGFPALVVESG--TD---RYLITTGYRPIEALRQLLDTWLQQH 212 (216)
T ss_dssp HHHHHHTTCCSSSEEEEEET--TE---EEEEESSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcccceEEEEEC--CE---EEEeccCCCCHHHHHHHHHHHHHhc
Confidence 45577899999999887642 42 2224568889999998888777653
No 401
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=22.44 E-value=79 Score=29.73 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=30.4
Q ss_pred chHHHHHHhHhhhC------CCChhHHHHHHhhCCCCHHHHHhhh
Q 012346 3 DVADKLAYFQAITG------LEDPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 3 ~~~~~l~qf~~it~------~~~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
++.++|.+|.+... -.|+.....+|.+.+||++.|...+
T Consensus 29 ~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l 73 (296)
T 1aua_A 29 AQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMF 73 (296)
T ss_dssp THHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 46788888877543 2344678999999999999998875
No 402
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=22.12 E-value=3.8e+02 Score=23.23 Aligned_cols=20 Identities=5% Similarity=-0.014 Sum_probs=13.8
Q ss_pred HHHHhCCCC---------CCCcEEEEecC
Q 012346 236 KMSNSLKAS---------RYPFCAVVMPA 255 (465)
Q Consensus 236 ~va~~l~~~---------~~P~i~ii~~~ 255 (465)
.+++.|++. ..|..+||++.
T Consensus 146 ~~~~~ygv~~~~~~~~g~~~p~~~lID~~ 174 (200)
T 3zrd_A 146 DFKQAYGVAITEGPLAGLTARAVVVLDGQ 174 (200)
T ss_dssp HHHHHTTCEECSSTTTTSBCCEEEEECTT
T ss_pred HHHHHhCceeecccCCCccccEEEEECCC
Confidence 456666654 36999999873
No 403
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=21.93 E-value=74 Score=30.68 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=30.9
Q ss_pred chHHHHHHhHhhhC------CCChhHHHHHHhhCCCCHHHHHhhh
Q 012346 3 DVADKLAYFQAITG------LEDPDLCTEILQAHDWDLELAISSF 41 (465)
Q Consensus 3 ~~~~~l~qf~~it~------~~~~~~a~~~L~~~~W~le~A~~~~ 41 (465)
++.++|.+|.+... -.|+.....+|.+.+||++.|...+
T Consensus 38 ~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL 82 (320)
T 3q8g_A 38 EQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMF 82 (320)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 36788889887752 2344678999999999999999886
No 404
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=21.01 E-value=1.4e+02 Score=28.51 Aligned_cols=89 Identities=10% Similarity=0.000 Sum_probs=54.5
Q ss_pred ccCHHHHHHHHHhcCcEEEEEEeCCCCCCchHHHhhcCCCHHHHHHhhccceEeecccCc--hHHHHHHHhCCCCCCCcE
Q 012346 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA--SEGFKMSNSLKASRYPFC 249 (465)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyL~~~~~~~s~~f~r~~l~~~~v~~~l~~~fv~w~~~v~~--~Eg~~va~~l~~~~~P~i 249 (465)
.+..+.++....++.+ +|.+..+.+..|+.+.. +|.. +.+.+-..-++..+ .+...+++.++++.||.+
T Consensus 185 s~~~~~~la~~l~~~~--vV~F~A~WC~~Ck~l~p-~le~------lA~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~ 255 (291)
T 3kp9_A 185 PSPLAVGLAAHLRQIG--GTMYGAYWCPHCQDQKE-LFGA------AFDQVPYVECSPNGPGTPQAQECTEAGITSYPTW 255 (291)
T ss_dssp CCSTHHHHHHHHHHTT--CEEEECTTCHHHHHHHH-HHGG------GGGGSCEEESCSSCSSSCCCHHHHTTTCCSTTEE
T ss_pred CCHHHHHHHHHhCCCC--EEEEECCCCHHHHHHHH-HHHH------HHHHcCEEEEeecCchhhHHHHHHHcCCcccCeE
Confidence 5566666666655555 57778888766766542 2211 12233344455322 225577899999999995
Q ss_pred EEEecCCCcceeeEEeeecCCChHHHHHHH
Q 012346 250 AVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (465)
Q Consensus 250 ~ii~~~~~~~~~vl~~i~G~~~~~~~~~~L 279 (465)
.+ .|+ ++.|..+.+++.+.+
T Consensus 256 ~i----~G~------~~~G~~~~~~L~~~l 275 (291)
T 3kp9_A 256 II----NGR------TYTGVRSLEALAVAS 275 (291)
T ss_dssp EE----TTE------EEESCCCHHHHHHHT
T ss_pred EE----CCE------EecCCCCHHHHHHHH
Confidence 54 253 266888888877655
No 405
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=20.83 E-value=1.1e+02 Score=24.39 Aligned_cols=62 Identities=26% Similarity=0.332 Sum_probs=39.9
Q ss_pred EEEEecCCCcHHHHHHHHHhcCCCCCc-----------CeEEEeCCCCcccCC---CCccCcccccCCCCCeeEEEE
Q 012346 401 KERRFHSTAVVQLLYDYVDSLGCLEVQ-----------NYSLVSNFPRVVYST---DKFSLSLKEAGLHPQASLFVE 463 (465)
Q Consensus 401 ~~rrF~~~~tl~~l~~fv~~~~~~~~~-----------~f~L~t~fPr~~~~~---~~~~~TL~e~gL~p~~~L~ve 463 (465)
+.-.+..+.||+++.+.+.....+.-. +=.|.-..|+ .+.. ....++|.|+|+..+.-|.|-
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp-~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVT-SIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCH-HHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcH-HHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 445889999999999999775432111 2223333332 2221 125889999999998888774
Done!