Query 012348
Match_columns 465
No_of_seqs 133 out of 372
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 07:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1.5E-28 5.1E-33 215.3 13.1 113 348-462 3-119 (130)
2 4i1k_A B3 domain-containing tr 99.6 2.8E-15 9.7E-20 134.1 12.1 114 337-459 25-141 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 1E-13 3.6E-18 116.1 10.1 91 355-457 7-98 (104)
4 1na6_A Ecorii, restriction end 90.4 0.32 1.1E-05 50.4 5.9 91 356-446 18-123 (404)
5 3lqh_A Histone-lysine N-methyl 57.0 5.1 0.00017 37.1 2.4 56 58-120 4-65 (183)
6 2lo3_A SAGA-associated factor 45.3 7.8 0.00027 28.8 1.3 16 77-92 13-28 (44)
7 3o27_A Putative uncharacterize 37.1 37 0.0013 27.4 4.1 42 418-460 22-63 (68)
8 3m7a_A Uncharacterized protein 33.4 74 0.0025 28.2 5.9 51 393-443 83-140 (140)
9 3ngh_A PDZ domain-containing p 30.3 62 0.0021 25.5 4.5 47 396-443 5-52 (106)
10 3e0e_A Replication protein A; 30.0 46 0.0016 27.0 3.8 35 394-446 40-74 (97)
11 2k75_A Uncharacterized protein 29.7 56 0.0019 27.0 4.3 31 394-445 40-70 (106)
12 3mhs_E SAGA-associated factor 27.3 17 0.00059 31.0 0.7 13 79-91 73-85 (96)
13 2e63_A KIAA1787 protein; struc 26.6 27 0.00092 31.7 1.9 30 432-461 115-144 (170)
14 3pjy_A Hypothetical signal pep 22.5 1.8E+02 0.006 25.5 6.3 50 393-445 69-128 (136)
15 2pa1_A PDZ and LIM domain prot 20.9 89 0.003 23.7 3.7 18 427-444 36-53 (87)
16 1eik_A RNA polymerase subunit 20.0 1.1E+02 0.0037 25.0 4.1 33 426-459 42-74 (77)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=1.5e-28 Score=215.26 Aligned_cols=113 Identities=36% Similarity=0.659 Sum_probs=100.9
Q ss_pred cCCCCCcccceEEEecccccCCCCCcEEeehhhhhhcCCCCCC---CCCceEEEEeCCCCeEEeEEEEcCCCCCCceeec
Q 012348 348 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE 424 (465)
Q Consensus 348 sg~~~s~~~~LF~KvLT~SDVg~lgRLVIPK~~AEa~FP~L~~---~~Gv~L~veD~~Gk~W~Frfrfw~NnsSR~YVLt 424 (465)
+|..+.+.+++|+|+||+|||++.+||+||+++||+|||.++. .+++.|.++|.+|++|+|+|+|| +++++|+|+
T Consensus 3 ~~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt 80 (130)
T 1wid_A 3 SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLT 80 (130)
T ss_dssp -----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEE
T ss_pred CCCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEc
Confidence 3456667789999999999999889999999999999999875 47899999999999999999999 668899997
Q ss_pred -CchhHhhhcCCCCCCEEEEeecCCCCceEEEEEeeecc
Q 012348 425 -GVTPCIQNMQLQAGDIGNQPKSQESYEMFSFMWKVHVH 462 (465)
Q Consensus 425 -GW~~FVrsK~LqaGDtVtF~R~~ngg~rf~I~~rr~~~ 462 (465)
||..||++++|++||+|+|++.++++.+|+|++||+..
T Consensus 81 ~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~ 119 (130)
T 1wid_A 81 KGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 119 (130)
T ss_dssp SSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred CChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCC
Confidence 99999999999999999999999888899999999865
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.61 E-value=2.8e-15 Score=134.05 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=89.1
Q ss_pred CCCCchhhhhccCC--CCCcccceEEEecccccCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEeEEEEcC
Q 012348 337 PRFTDQDLQQISGD--SNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWP 414 (465)
Q Consensus 337 prvtd~el~~~sg~--~~s~~~~LF~KvLT~SDVg~lgRLVIPK~~AEa~FP~L~~~~Gv~L~veD~~Gk~W~Frfrfw~ 414 (465)
..+|++|.+..... .-..-.+.|.|+||+|||.+..+|.||++.+++|||.. ...|.++|. |+.|.+++.|+.
T Consensus 25 ~~~t~~~k~~a~~~A~~~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~~ 99 (146)
T 4i1k_A 25 RTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYKA 99 (146)
T ss_dssp -CCCHHHHHHHHHHHHHCCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEET
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEeC
Confidence 35776654433211 11123579999999999997668999999999999975 467888887 699999999983
Q ss_pred CCCCCceeec-CchhHhhhcCCCCCCEEEEeecCCCCceEEEEEee
Q 012348 415 NNNSRMYVLE-GVTPCIQNMQLQAGDIGNQPKSQESYEMFSFMWKV 459 (465)
Q Consensus 415 NnsSR~YVLt-GW~~FVrsK~LqaGDtVtF~R~~ngg~rf~I~~rr 459 (465)
..++|+ ||..||++++|++||+|+|...++....|.+.+-|
T Consensus 100 ----~~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR 141 (146)
T 4i1k_A 100 ----GRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFR 141 (146)
T ss_dssp ----TEEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEEC
T ss_pred ----CcEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEe
Confidence 246776 99999999999999999999998865677777655
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.49 E-value=1e-13 Score=116.07 Aligned_cols=91 Identities=15% Similarity=0.246 Sum_probs=75.1
Q ss_pred ccceEEEecccccCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEeEEEEcCCCCCCceeec-CchhHhhhc
Q 012348 355 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE-GVTPCIQNM 433 (465)
Q Consensus 355 ~~~LF~KvLT~SDVg~lgRLVIPK~~AEa~FP~L~~~~Gv~L~veD~~Gk~W~Frfrfw~NnsSR~YVLt-GW~~FVrsK 433 (465)
..+.|.|+|+++|. ..+|.||++.++.+.+.+ +-.++++|..|++|.++++++. +.++|+ ||.+||+++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~----~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG----EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET----TEEEECTTHHHHHHHH
T ss_pred CCCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC----CcEEEccChHHHHHHc
Confidence 34789999999994 479999999998765543 4678999999999999999872 456776 999999999
Q ss_pred CCCCCCEEEEeecCCCCceEEEEE
Q 012348 434 QLQAGDIGNQPKSQESYEMFSFMW 457 (465)
Q Consensus 434 ~LqaGDtVtF~R~~ngg~rf~I~~ 457 (465)
+|++||.++|....+. .|.+.+
T Consensus 77 ~L~~GD~lvF~~~~~~--~f~V~I 98 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDR--TFYVII 98 (104)
T ss_dssp TCCTTCEEEEEECSSS--EEEEEE
T ss_pred CCCCCCEEEEEEcCCC--eEEEEE
Confidence 9999999999887764 565544
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=90.42 E-value=0.32 Score=50.36 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=63.8
Q ss_pred cceEEEecccccCCC----CCcEEeehhhhhhcCCCCCCC---CC-c--eEEEEeCCCCeEEeEEEEcCC----CCCCce
Q 012348 356 TPLFEKMLSASDAGR----IGRLVLPKKCAEAYFPPISQP---EG-L--PLKVQDSKGKEWIFQFRFWPN----NNSRMY 421 (465)
Q Consensus 356 ~~LF~KvLT~SDVg~----lgRLVIPK~~AEa~FP~L~~~---~G-v--~L~veD~~Gk~W~Frfrfw~N----nsSR~Y 421 (465)
...|.|.|++.|++. ...+.+||.-++.+||.+..+ +. + .+.+-|...-.+.++++|..| ..+..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 478999999999993 558999998788999988632 22 2 222334433445888887732 234468
Q ss_pred eecCch-hHhhhcCCCCCCEEEEeec
Q 012348 422 VLEGVT-PCIQNMQLQAGDIGNQPKS 446 (465)
Q Consensus 422 VLtGW~-~FVrsK~LqaGDtVtF~R~ 446 (465)
-|++|. .+.=.....+||.++|-+.
T Consensus 98 RLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEeecCCCCcccccCCCCCEEEEEEe
Confidence 898885 3455578899999988765
No 5
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=57.04 E-value=5.1 Score=37.05 Aligned_cols=56 Identities=20% Similarity=0.605 Sum_probs=44.1
Q ss_pred hh-ccccccccccccccccCCCCCccccccCCCceeechhhh-hhhhhhhh----cCCcceeccccccc
Q 012348 58 LC-VYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITS-VHAFTLLD----AGGIECMTCARKNV 120 (465)
Q Consensus 58 LC-~CgsayE~~~FCd~FH~~~sGWR~C~~C~KrlHCGCI~S-~~~~~lLD----~GGv~C~~C~r~s~ 120 (465)
.| .|+..|....| ++-|-.|..|..-.|--|+-- ...+++++ ...-.|..|.++..
T Consensus 4 ~CpiC~k~Y~~~~~-------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDY-------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCT-------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCccc-------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 58 78888888765 677999999999999999843 34567774 34779999998764
No 6
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=45.28 E-value=7.8 Score=28.82 Aligned_cols=16 Identities=38% Similarity=0.910 Sum_probs=13.2
Q ss_pred CCCCccccccCCCcee
Q 012348 77 NASGWRCCESCGKRVH 92 (465)
Q Consensus 77 ~~sGWR~C~~C~KrlH 92 (465)
+..-+|.|++|||+|-
T Consensus 13 ~~~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLA 28 (44)
T ss_dssp CCCCEEECTTTCCEEE
T ss_pred ccccchhhcccCCcch
Confidence 4567899999999873
No 7
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=37.09 E-value=37 Score=27.35 Aligned_cols=42 Identities=10% Similarity=-0.006 Sum_probs=32.6
Q ss_pred CCceeecCchhHhhhcCCCCCCEEEEeecCCCCceEEEEEeee
Q 012348 418 SRMYVLEGVTPCIQNMQLQAGDIGNQPKSQESYEMFSFMWKVH 460 (465)
Q Consensus 418 SR~YVLtGW~~FVrsK~LqaGDtVtF~R~~ngg~rf~I~~rr~ 460 (465)
+..|+++==.+++++.++++||.+...-++.+| .+-++|||-
T Consensus 22 ~etyYInIPaeI~kaLgIk~gD~fel~ve~kdg-eIvLcykRV 63 (68)
T 3o27_A 22 HTTFYLLIPKDIAEALDIKPDDTFILNMEQKDG-DIVLSYKRV 63 (68)
T ss_dssp CCCEEEEECHHHHHHTTCCTTCCEEEEEEEETT-EEEEEEEEC
T ss_pred ceEEEEeCcHHHHHHhCCCCCCEEEEEEecCCC-eEEEEehhh
Confidence 345666655799999999999999988775443 688899883
No 8
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=33.44 E-value=74 Score=28.20 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=31.1
Q ss_pred CceEEEEeCCCCeEEeEEEEcCCCC-------CCceeecCchhHhhhcCCCCCCEEEE
Q 012348 393 GLPLKVQDSKGKEWIFQFRFWPNNN-------SRMYVLEGVTPCIQNMQLQAGDIGNQ 443 (465)
Q Consensus 393 Gv~L~veD~~Gk~W~Frfrfw~Nns-------SR~YVLtGW~~FVrsK~LqaGDtVtF 443 (465)
.+.|.+.|.+|+.=...-...|... .-.|||+==.-++.++++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLAARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHHHHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChHHHcCCCCCCEEeC
Confidence 4667777777766555432222211 34699972222347889999999874
No 9
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=30.27 E-value=62 Score=25.48 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=28.4
Q ss_pred EEEEeCCCCeEEeEEEEcCCCCCCceeec-CchhHhhhcCCCCCCEEEE
Q 012348 396 LKVQDSKGKEWIFQFRFWPNNNSRMYVLE-GVTPCIQNMQLQAGDIGNQ 443 (465)
Q Consensus 396 L~veD~~Gk~W~Frfrfw~NnsSR~YVLt-GW~~FVrsK~LqaGDtVtF 443 (465)
+.+....|..|-|....-. .....++.. -...-+...+|++||.|+-
T Consensus 5 v~l~~~~~~~~G~~l~~~~-~~~g~~V~~V~~~spA~~aGl~~GD~I~~ 52 (106)
T 3ngh_A 5 SKLSKQEGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKAGLLDGDRVLR 52 (106)
T ss_dssp EEEECCTTCCCCCEEECCT-TCCSCEEECCCTTSHHHHTTCCTTCEEEE
T ss_pred EEEEeCCCCeeCEEEEEEe-CCCCEEEEEeCCCCHHHHcCCCCCCEEEE
Confidence 4455555666777666542 223445544 4445566778999999874
No 10
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=29.95 E-value=46 Score=27.00 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=25.1
Q ss_pred ceEEEEeCCCCeEEeEEEEcCCCCCCceeecCchhHhhhcCCCCCCEEEEeec
Q 012348 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIGNQPKS 446 (465)
Q Consensus 394 v~L~veD~~Gk~W~Frfrfw~NnsSR~YVLtGW~~FVrsK~LqaGDtVtF~R~ 446 (465)
..+.+.|.+| ..+++.| .+.+.. .|++||+|.+ +.
T Consensus 40 ~~~~l~DeTG---~I~~tlW-------------~~~~~~-~i~~Gdvv~i-~g 74 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTLW-------------NELADF-EVKKGDIAEV-SG 74 (97)
T ss_dssp EEEEEEETTE---EEEEEEE-------------GGGGGC-CCCTTCEEEE-EE
T ss_pred EEEEEECCCC---cEEEEEE-------------CCcccc-ccCCCCEEEE-EE
Confidence 3678899988 5666766 333333 8999999999 53
No 11
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=29.72 E-value=56 Score=27.00 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=24.7
Q ss_pred ceEEEEeCCCCeEEeEEEEcCCCCCCceeecCchhHhhhcCCCCCCEEEEee
Q 012348 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIGNQPK 445 (465)
Q Consensus 394 v~L~veD~~Gk~W~Frfrfw~NnsSR~YVLtGW~~FVrsK~LqaGDtVtF~R 445 (465)
..+.+.|.+| ..+++.| +.. |++||+|.+..
T Consensus 40 ~~~~l~DeTG---~I~~tlW--~~~----------------l~~Gdvv~i~n 70 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSF--GKQ----------------LQDSDVVRIDN 70 (106)
T ss_dssp EEEEEECSSC---EEEEEEE--SSC----------------CCTTEEEEEEE
T ss_pred EEEEEEcCCC---eEEEEEE--cCc----------------cCCCCEEEEEe
Confidence 4678999999 6888999 222 99999998863
No 12
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=27.34 E-value=17 Score=30.99 Aligned_cols=13 Identities=46% Similarity=1.112 Sum_probs=11.7
Q ss_pred CCccccccCCCce
Q 012348 79 SGWRCCESCGKRV 91 (465)
Q Consensus 79 sGWR~C~~C~Krl 91 (465)
.-.|-|+.|||+|
T Consensus 73 ~~YRvCn~CGkPI 85 (96)
T 3mhs_E 73 IQYRVCEKCGKPL 85 (96)
T ss_dssp CCCEEETTTCCEE
T ss_pred ccchhhhccCCce
Confidence 5689999999997
No 13
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.55 E-value=27 Score=31.74 Aligned_cols=30 Identities=13% Similarity=-0.137 Sum_probs=25.0
Q ss_pred hcCCCCCCEEEEeecCCCCceEEEEEeeec
Q 012348 432 NMQLQAGDIGNQPKSQESYEMFSFMWKVHV 461 (465)
Q Consensus 432 sK~LqaGDtVtF~R~~ngg~rf~I~~rr~~ 461 (465)
-..|++||+|.|++..++...|.||-..+.
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iNg~~~g 144 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVNGRDCG 144 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEESSCEEE
T ss_pred ccccCCCCEEEEEEcCCcEEEEEECCccce
Confidence 456789999999999999999988866544
No 14
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=22.52 E-value=1.8e+02 Score=25.50 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=32.1
Q ss_pred CceEEEEeCCCCeEEeEEEEcCC-------CCCCceeec---CchhHhhhcCCCCCCEEEEee
Q 012348 393 GLPLKVQDSKGKEWIFQFRFWPN-------NNSRMYVLE---GVTPCIQNMQLQAGDIGNQPK 445 (465)
Q Consensus 393 Gv~L~veD~~Gk~W~Frfrfw~N-------nsSR~YVLt---GW~~FVrsK~LqaGDtVtF~R 445 (465)
.+.|.+.|.+|+.=.....-.|. ...-.|||+ || +.+.++++||.|.+--
T Consensus 69 PLDiiFld~~g~Vv~i~~~~~P~~~~~~~~~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~~~ 128 (136)
T 3pjy_A 69 PLDMLFIASDGTIRTIHENAVPHSEAIIDSREPVAYVLELNAGT---VKRLGVSPGDRLEGAG 128 (136)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEECCSCEEEEEEEETTH---HHHHTCCTTCEEEETT
T ss_pred ceEEEEECCCCEEEEEEccCCCCcCCCCCCCCceeEEEEeCcCh---HHhcCCCCCCEEEECc
Confidence 36666777777655553333221 123469997 65 4788999999998643
No 15
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=20.86 E-value=89 Score=23.65 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=13.2
Q ss_pred hhHhhhcCCCCCCEEEEe
Q 012348 427 TPCIQNMQLQAGDIGNQP 444 (465)
Q Consensus 427 ~~FVrsK~LqaGDtVtF~ 444 (465)
..-+...+|++||.|+-.
T Consensus 36 ~spA~~aGL~~GD~I~~i 53 (87)
T 2pa1_A 36 RGKAKDADLRPGDIIVAI 53 (87)
T ss_dssp SSHHHHTTCCTTCEEEEE
T ss_pred CChHHHcCCCCCCEEEEE
Confidence 344556789999998753
No 16
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=20.01 E-value=1.1e+02 Score=24.99 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=25.2
Q ss_pred chhHhhhcCCCCCCEEEEeecCCCCceEEEEEee
Q 012348 426 VTPCIQNMQLQAGDIGNQPKSQESYEMFSFMWKV 459 (465)
Q Consensus 426 W~~FVrsK~LqaGDtVtF~R~~ngg~rf~I~~rr 459 (465)
--+.++.-+++.||+|-+.|..... .-.+.||.
T Consensus 42 ~DPvar~~G~k~GdVvkI~R~S~ta-G~~v~YR~ 74 (77)
T 1eik_A 42 TDPVAKAIGAKRGDIVKIIRKSPTA-EEFVTYRL 74 (77)
T ss_dssp TSHHHHGGGCCTTCEEEEEEEETTT-EEEEEEEE
T ss_pred cCHhhHHhCCCCCCEEEEEECCCCC-CCcEEEEE
Confidence 3578899999999999999976543 23666763
Done!