BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012349
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
pdb|1WPQ|B Chain B, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1
With Nad And Dihydroxyactone
Length = 349
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 30/293 (10%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V ++ +A DADI+I +P ++ +++ + K P ISL KGV+ + I
Sbjct: 76 VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKAN---PTGISLIKGVDEGPNGLKLI 132
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
+++I G+P+ ++ G NIASE+ ++++ I C + L + ++ P+F
Sbjct: 133 ---SEVIGERLGIPMSVLM---GANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNF 186
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEE 329
+ ++ T E+ G LKNV A+GAG L T K+ EM+ L
Sbjct: 187 RITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNT-KAAVIRLGLMEMIAFAKLFCSG 245
Query: 330 PEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKA 384
P A L +AD T GRN + A+ G+ L + +QG +
Sbjct: 246 PVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARE 305
Query: 385 FYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 437
Y +L L V+ P+ +YK+ P+ + L++
Sbjct: 306 LYSILQHKGL-------------VDKFPLFMAVYKVC-YEGQPVGEFIHCLQN 344
>pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate
Dehydrogenase 1 Complex With Nad
Length = 354
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 30/293 (10%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V ++ +A DADI+I +P ++ +++ + K T ISL KGV+ + I
Sbjct: 81 VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATG---ISLIKGVDEGPNGLKLI 137
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
+++I G+P+ ++ G NIASE+ ++++ I C + L + ++ P+F
Sbjct: 138 ---SEVIGERLGIPMSVLM---GANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNF 191
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEE 329
+ ++ T E+ G LKNV A+GAG L T K+ EM+ L
Sbjct: 192 RITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNT-KAAVIRLGLMEMIAFAKLFCSG 250
Query: 330 PEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKA 384
P A L +AD T GRN + A+ G+ L + +QG +
Sbjct: 251 PVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARE 310
Query: 385 FYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 437
Y +L L V+ P+ +YK+ P+ + L++
Sbjct: 311 LYSILQHKGL-------------VDKFPLFMAVYKVC-YEGQPVGEFIHCLQN 349
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 38/296 (12%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
++NL EAV DAD+++ +P + +EI+ R K+ + I+L KG++ E +
Sbjct: 78 MSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALG----ITLIKGIDEGPEGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPL--AKFLRRP 267
I + +I G+ +I L G NIA+E+ +++ I G++ L + L+ P
Sbjct: 134 I---SDIIREKMGI---DISVLMGANIANEVAAEKFCETTI-GSKVMENGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL 325
+F TV D+ D V E+ G LKN+ A+GAG L T K+ EM+ +
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNT-KAAVIRLGLMEMIAFARI 243
Query: 326 LAEEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGIS 380
+ A L +AD T GRN + A+ G+ +L + +QG
Sbjct: 244 FCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQGPQ 303
Query: 381 AVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALR 436
Y +L Q L ++ P+ +Y+I P+Q +L L+
Sbjct: 304 TSAEVYRILKQKGL-------------LDKFPLFTAVYQIC-YESRPVQEMLSCLQ 345
>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
pdb|1X0V|B Chain B, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
Length = 354
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 120/293 (40%), Gaps = 30/293 (10%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V ++ +A DADI+I +P ++ +++ + K T ISL KGV+ + I
Sbjct: 81 VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATG---ISLIKGVDEGPNGLKLI 137
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
+++I G+P L G NIASE+ ++++ I C + L + + P+F
Sbjct: 138 ---SEVIGERLGIPXS---VLXGANIASEVADEKFCETTIGCKDPAQGQLLKELXQTPNF 191
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEE 329
+ ++ T E+ G LKNV A+GAG L T +V + F L
Sbjct: 192 RITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLXEXIAF-AKLFCSG 250
Query: 330 PEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKA 384
P A L +AD T GRN + A+ G+ L + +QG +
Sbjct: 251 PVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARE 310
Query: 385 FYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 437
Y +L L V+ P+ +YK+ P+ + L++
Sbjct: 311 LYSILQHKGL-------------VDKFPLFXAVYKVC-YEGQPVGEFIHCLQN 349
>pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
pdb|1YJ8|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Glycerol-3- Phosphate Dehydrogenase
Length = 375
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 93/428 (21%), Positives = 168/428 (39%), Gaps = 96/428 (22%)
Query: 38 KAEGDPLRIVGVGAGAWGSVFTAML----QDSYGYLRDKVLIRIWRRPGRSVDRATAEHL 93
K + PL+I +G+G W S + ++ +++Y + + +R+W R + E +
Sbjct: 16 KLKDGPLKISILGSGNWASAISKVVGTNAKNNYLFENE---VRMWIRD----EFVNGERM 68
Query: 94 FEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVV-- 151
++IN++ + + YLK V PL P +V
Sbjct: 69 VDIINNKHENTK-------YLKGV--------------------------PL-PHNIVAH 94
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPV-IISLAKGVEAELEAVPRI 210
++L + DAD++I +P + V I +I ISL KG I
Sbjct: 95 SDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGF---------I 145
Query: 211 ITPTQM------INRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-----WRKP 259
+ QM I+ +P L G NIA ++ + ++ A I G +K W++
Sbjct: 146 VKKNQMKLCSNYISDFLNIPCS---ALSGANIAMDVAMENFSEATIGGNDKDSLVIWQR- 201
Query: 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEM 319
P+F + + + E+ G LKN+ + G L N SKS + +EM
Sbjct: 202 ---VFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGL-NLPTNSKSAIIRNGINEM 257
Query: 320 VFITHLLAEEPEK---LAGPLLADTYVTLLKGRNAWYGQELAKG---RLTLDLGDSIKGK 373
+ + ++ + L AD + L GRNA E K + +L + I
Sbjct: 258 ILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAEFIKSTPKKTWEELENEILKG 317
Query: 374 GMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 433
+QG +K Y ++ + ++ T E P+ +L+KI E P ++L+
Sbjct: 318 QKLQGTVTLKYVYHMIKEKNM------------TNEF-PLFTVLHKISFENEDP-SSLLK 363
Query: 434 ALRDETMN 441
+ +N
Sbjct: 364 TFMNNKIN 371
>pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
pdb|4FGW|B Chain B, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1,
From Sacharomyces Cerevisiae
Length = 391
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/402 (21%), Positives = 152/402 (37%), Gaps = 78/402 (19%)
Query: 38 KAEGDPLRIVGVGAGAWGSVFTAML-QDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFE 95
KA P ++ +G+G WG+ ++ ++ GY ++++W + E L E
Sbjct: 29 KAAEKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFE----EEINGEKLTE 84
Query: 96 VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ 155
+IN+R ++ YL + L D N++ P +L
Sbjct: 85 IINTRHQNVK-------YLPGI-------------TLPD----NLVANP--------DLI 112
Query: 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQ 215
++V D DI++ +P + ++ + + IS KG E + V + +
Sbjct: 113 DSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRA---ISCLKGFEVGAKGVQLL---SS 166
Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARIC----------GAEKWRKPLAKFLR 265
I G+ L G NIA+E+ + ++ + G + K L
Sbjct: 167 YITEELGIQCG---ALSGANIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFH 223
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL---TNESATSKSVYFAHCT--SEMV 320
RP+F V D+ + G LKNV A+G G V L N SA + V +M
Sbjct: 224 RPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMF 283
Query: 321 FITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELA-KGRLTLDLGDSIKGKGMIQGI 379
F ++ AG +AD T GRN + +A G+ + + QG+
Sbjct: 284 FPESREETYYQESAG--VADLITTCAGGRNVKVARLMATSGKDAWECEKELLNGQSAQGL 341
Query: 380 SAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 421
K +E L + +VE P+ + +Y+I+
Sbjct: 342 ITCKEVHEWL-------------ETCGSVEDFPLFEAVYQIV 370
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 21/250 (8%)
Query: 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT 212
L++ + +A++V+ G+ + V I Y K++ I+ ++KG+ ++ ++T
Sbjct: 64 QLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKDQ----YIVLISKGL---IDFDNSVLT 116
Query: 213 PTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTV 271
+ + R E + + GP IA E+ + +E + + +F V
Sbjct: 117 VPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGV 176
Query: 272 WDNGDLVTHEVMGGLKNVYAIGAGMVAALTN----ESATSKSVYFAHCTSEMVFITHLLA 327
D++ E+ LKNVY+I + + E + +K V +EM + +L
Sbjct: 177 EVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILG 236
Query: 328 EEPEKLAG-PLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSI-----KGKGMIQGISA 381
+ E G D T GRN G+ L KG L + +++ +G G+++G
Sbjct: 237 GDRETAFGLSGFGDLIATFRGGRNGMLGELLGKG---LSIDEAMEELERRGVGVVEGYKT 293
Query: 382 VKAFYELLSQ 391
+ Y L S+
Sbjct: 294 AEKAYRLSSK 303
>pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
pdb|1Z82|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
(Tm0378) From Thermotoga Maritima At 2.00 A Resolution
Length = 335
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 125/298 (41%), Gaps = 49/298 (16%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPV----IISLAKGVEAELEAV 207
TN E + DI++ +P +E + +PV +++L+KG+E ++
Sbjct: 72 TNDLEEIKKEDILVIAIPVQYIREHL----------LRLPVKPSXVLNLSKGIE--IKTG 119
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRP 267
R+ ++++ G P L GP+ A E+ K + G K L K +
Sbjct: 120 KRV---SEIVEEILGCPY---AVLSGPSHAEEVAKKLPTAVTLAGENS--KELQKRISTE 171
Query: 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLA 327
+F V+ D+V E+ G LKNV AI AG++ +K+ E+
Sbjct: 172 YFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWD-NAKAALETRGIYEIARFGXFFG 230
Query: 328 EEPEKLAG-PLLADTYVTLLK--GRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKA 384
+ + G + D VT RN +G+ +A+G L L +S +++G VKA
Sbjct: 231 ADQKTFXGLAGIGDLXVTCNSRYSRNRRFGELIARGFNPLKLLES--SNQVVEGAFTVKA 288
Query: 385 FYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE----ALRDE 438
++ ++ + PI + +Y+++ + P+Q+ + +L+DE
Sbjct: 289 VXKIAKENKIDX---------------PISEEVYRVVYEGKPPLQSXRDLXRRSLKDE 331
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 24/210 (11%)
Query: 231 LGGPNIASEIY-NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNV 289
+ GP++A+E+ N A + ++ K L + L F V+ N D++ E+ G +KN+
Sbjct: 159 ISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNI 218
Query: 290 YAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG-PLLADTYVTLL-- 346
AI G+ L S +++ +EM + + + E L G L D +T
Sbjct: 219 LAIATGISDGLKLGS-NARAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCTDN 277
Query: 347 KGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGI-SAVKAFYELLSQSSLSVLHPEENKPV 405
+ RN +G L LG+ + K Q I A++ Y +L+ H E
Sbjct: 278 QSRNRRFG---------LALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIE---- 324
Query: 406 ATVELCPILKMLYKILIMRESPIQAILEAL 435
P+ +++IL P QA+ E L
Sbjct: 325 -----MPLTFQVHRILHEDLDPQQAVQELL 349
>pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-phosphate Dehydrogenase
pdb|1EVZ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With Nad
pdb|1JDJ|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase In Complex With
2-Fluoro-6-Chloropurine
pdb|1M66|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Chloro-Purine
pdb|1M67|A Chain A, Crystal Structure Of Leishmania Mexicana Gpdh Complexed
With Inhibitor 2-Bromo-6-Hydroxy-Purine
pdb|1N1E|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1E|B Chain B, Crystal Structure Of Leishmania Mexicana Glycerol-3-
Phosphate Dehydrogenase Complexed With Dhap And Nad
pdb|1N1G|A Chain A, Crystal Structure Of Leishmania Mexicana
Glycerol-3-Phosphate Dehydrogenase With Inhibitor Bcp
Length = 366
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 20/158 (12%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEE----ISRYWKERITVPVIISLAKGVEAELEAV 207
+++++A A+I++ +P+ + FE+ + Y KE+ VPV++ KG+E
Sbjct: 77 SDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK-QVPVLVC-TKGIERS---- 130
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY-----ANARICGAEKWRKPLAK 262
+ P ++I P+ ++L GP+ A E+ + A+A I A + ++ ++
Sbjct: 131 -TLKFPAEIIGEFLPSPLLSVL--AGPSFAIEVATGVFTCVSIASADINVARRLQRIMST 187
Query: 263 FLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL 300
R F W D V EV +KNV AIG+G+ L
Sbjct: 188 GDR--SFVCWATTDTVGCEVASAVKNVLAIGSGVANGL 223
>pdb|2GUW|A Chain A, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
pdb|2GUW|B Chain B, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
pdb|2GUW|C Chain C, Crystal Structure Of Amp Nucleosidase From Salmonella
Typhimurium Lt2
Length = 484
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 107 LIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVIN 166
+I C L+ +A +GD L A L+D L+ + P P+ + +Q A++DA ++
Sbjct: 302 MIGHCGGLRESQA-IGDYVL-AHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKAVS 359
Query: 167 GLPSTETKE------VFEEISRYWKERITVPVI-ISLAKGVEAELEAV 207
G+P E K+ V R W+ R + + +L++ V ++E+
Sbjct: 360 GMPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDMESA 407
>pdb|1T8R|A Chain A, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|B Chain B, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|C Chain C, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|D Chain D, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|E Chain E, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8R|F Chain F, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8S|A Chain A, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|B Chain B, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|C Chain C, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|D Chain D, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|E Chain E, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8S|F Chain F, Crystal Structure Of E.Coli Amp Nucleosidase Complexed
With Formicin 5'-Monophosphate
pdb|1T8W|A Chain A, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|B Chain B, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|C Chain C, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|D Chain D, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|E Chain E, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8W|F Chain F, Crystal Structure Of E. Coli Amp Nucleosidase
pdb|1T8Y|A Chain A, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|B Chain B, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|C Chain C, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|D Chain D, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|E Chain E, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
pdb|1T8Y|F Chain F, Crystal Structure Of E.coli Amp Nucleosidase Complexed
With Phosphate
Length = 484
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 108 IRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVING 167
I C L+ +A +GD L A L+D L+ + P P+ + +Q A++DA +++G
Sbjct: 303 IGHCGGLRESQA-IGDYVL-AHAYLRDDHVLDAVLPPDIPIPSIAEVQRALYDATKLVSG 360
Query: 168 LPSTETKE------VFEEISRYWKERITVPVI-ISLAKGVEAELEAV 207
P E K+ V R W+ R + + +L++ V + E+
Sbjct: 361 RPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRAVAIDXESA 407
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 156 EAVWDADIVINGLPSTETK----EVFEEISRYWKERITVPVIISLAKGV 200
E + DA++ I+GLP T T+ ++F R R+ V L++GV
Sbjct: 84 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 132
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 156 EAVWDADIVINGLPSTETK----EVFEEISRYWKERITVPVIISLAKGV 200
E + DA++ I+GLP T T+ ++F R R+ V L++GV
Sbjct: 84 EVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGV 132
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 157 AVWDADIVINGLPST----ETKEVFEEISRYWKERITVPVIISLAKGV 200
++ DA++ ++GLP T E +++F + R RI V + +++GV
Sbjct: 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGV 132
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200
++ DA++ ++GLP T +++ E++ + IT +++ A GV
Sbjct: 87 SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGV 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,292,393
Number of Sequences: 62578
Number of extensions: 534093
Number of successful extensions: 1260
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1239
Number of HSP's gapped (non-prelim): 28
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)