Query 012349
Match_columns 465
No_of_seqs 300 out of 2654
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 01:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0240 GpsA Glycerol-3-phosph 100.0 3.7E-73 8.1E-78 566.4 34.2 325 43-442 1-329 (329)
2 PTZ00345 glycerol-3-phosphate 100.0 7E-69 1.5E-73 550.8 35.7 349 33-441 1-360 (365)
3 TIGR03376 glycerol3P_DH glycer 100.0 2.6E-65 5.6E-70 521.0 33.9 329 45-433 1-341 (342)
4 KOG2711 Glycerol-3-phosphate d 100.0 6.2E-64 1.3E-68 494.6 30.8 363 25-443 3-372 (372)
5 PRK12439 NAD(P)H-dependent gly 100.0 2.2E-60 4.7E-65 486.5 37.1 326 42-443 6-336 (341)
6 PRK14620 NAD(P)H-dependent gly 100.0 6.8E-51 1.5E-55 413.4 35.1 318 44-436 1-326 (326)
7 PRK14619 NAD(P)H-dependent gly 100.0 1.5E-44 3.4E-49 364.5 34.5 299 43-443 4-307 (308)
8 PRK14618 NAD(P)H-dependent gly 100.0 2.5E-44 5.5E-49 365.7 34.2 321 43-442 4-328 (328)
9 PRK00094 gpsA NAD(P)H-dependen 100.0 8.7E-40 1.9E-44 330.3 35.4 321 43-437 1-325 (325)
10 PF07479 NAD_Gly3P_dh_C: NAD-d 100.0 1.7E-34 3.7E-39 261.8 14.2 144 275-434 1-149 (149)
11 PF01210 NAD_Gly3P_dh_N: NAD-d 99.9 9E-27 2E-31 213.3 15.1 152 45-253 1-152 (157)
12 PRK06522 2-dehydropantoate 2-r 99.9 3.7E-24 8E-29 214.2 22.8 284 44-423 1-296 (304)
13 PRK12921 2-dehydropantoate 2-r 99.9 1.4E-22 3E-27 203.3 23.5 286 44-423 1-299 (305)
14 PRK06249 2-dehydropantoate 2-r 99.9 4.8E-22 1E-26 201.2 24.6 286 42-423 4-307 (313)
15 PRK08229 2-dehydropantoate 2-r 99.9 1.7E-21 3.6E-26 198.8 24.1 296 43-423 2-315 (341)
16 PRK05708 2-dehydropantoate 2-r 99.9 5.8E-22 1.3E-26 200.1 18.5 283 43-423 2-295 (305)
17 COG1893 ApbA Ketopantoate redu 99.9 4E-21 8.7E-26 194.1 23.4 283 44-423 1-298 (307)
18 TIGR00745 apbA_panE 2-dehydrop 99.8 8.1E-20 1.8E-24 181.7 21.1 275 53-423 1-289 (293)
19 TIGR03026 NDP-sugDHase nucleot 99.8 9.2E-17 2E-21 168.6 22.8 224 44-335 1-241 (411)
20 PRK12491 pyrroline-5-carboxyla 99.7 7.7E-16 1.7E-20 153.3 21.9 196 44-333 3-200 (272)
21 PRK07634 pyrroline-5-carboxyla 99.7 1.4E-15 3.1E-20 148.0 20.8 197 43-333 4-202 (245)
22 PRK06928 pyrroline-5-carboxyla 99.7 7.3E-15 1.6E-19 146.5 19.9 161 43-277 1-164 (277)
23 COG0345 ProC Pyrroline-5-carbo 99.6 1.7E-14 3.6E-19 142.4 21.1 195 43-333 1-197 (266)
24 COG1004 Ugd Predicted UDP-gluc 99.6 3.2E-14 7E-19 145.3 21.2 219 44-334 1-238 (414)
25 PTZ00431 pyrroline carboxylate 99.6 4.3E-14 9.2E-19 139.7 20.4 188 44-333 4-193 (260)
26 PRK07680 late competence prote 99.6 3.4E-13 7.4E-18 134.0 22.1 161 44-279 1-163 (273)
27 PLN02688 pyrroline-5-carboxyla 99.6 2.7E-13 5.8E-18 133.9 20.6 156 44-275 1-159 (266)
28 PRK07679 pyrroline-5-carboxyla 99.5 8.7E-13 1.9E-17 131.6 22.0 160 44-277 4-166 (279)
29 PRK15461 NADH-dependent gamma- 99.5 8.4E-13 1.8E-17 132.9 17.3 257 44-421 2-266 (296)
30 TIGR01915 npdG NADPH-dependent 99.5 1.4E-12 3.1E-17 125.6 17.7 177 44-276 1-189 (219)
31 PRK11880 pyrroline-5-carboxyla 99.5 3.1E-12 6.7E-17 126.4 20.6 155 43-274 2-158 (267)
32 PRK11559 garR tartronate semia 99.5 3.9E-12 8.4E-17 127.6 21.6 256 43-421 2-266 (296)
33 TIGR01692 HIBADH 3-hydroxyisob 99.5 1.7E-12 3.6E-17 130.2 17.0 261 48-422 1-268 (288)
34 COG2084 MmsB 3-hydroxyisobutyr 99.5 2.7E-12 5.9E-17 127.9 18.2 200 44-335 1-204 (286)
35 TIGR01505 tartro_sem_red 2-hyd 99.4 1.2E-11 2.5E-16 124.0 18.2 196 45-335 1-202 (291)
36 PRK11064 wecC UDP-N-acetyl-D-m 99.4 2E-11 4.3E-16 128.6 20.1 218 43-333 3-243 (415)
37 PF03807 F420_oxidored: NADP o 99.4 3.5E-12 7.7E-17 106.4 10.6 94 45-199 1-96 (96)
38 PRK15057 UDP-glucose 6-dehydro 99.4 5.5E-11 1.2E-15 124.2 21.6 210 44-333 1-228 (388)
39 PRK06130 3-hydroxybutyryl-CoA 99.4 2.9E-11 6.2E-16 122.3 18.9 179 43-282 4-187 (311)
40 PRK06035 3-hydroxyacyl-CoA deh 99.4 2.1E-11 4.5E-16 122.3 17.5 201 43-297 3-207 (291)
41 TIGR00872 gnd_rel 6-phosphoglu 99.4 3.1E-10 6.6E-15 114.5 25.9 196 44-333 1-204 (298)
42 PRK06476 pyrroline-5-carboxyla 99.4 4.4E-11 9.6E-16 117.9 18.4 190 44-334 1-190 (258)
43 PRK09599 6-phosphogluconate de 99.3 1.3E-10 2.9E-15 117.1 21.4 197 44-334 1-207 (301)
44 PRK15182 Vi polysaccharide bio 99.3 1.2E-10 2.7E-15 122.9 22.0 221 42-335 5-241 (425)
45 PF03446 NAD_binding_2: NAD bi 99.3 4E-12 8.6E-17 117.0 9.5 152 43-272 1-158 (163)
46 PRK07531 bifunctional 3-hydrox 99.3 7.2E-11 1.6E-15 127.0 20.5 177 43-279 4-185 (495)
47 PRK15059 tartronate semialdehy 99.3 4.4E-11 9.6E-16 120.3 17.6 255 44-422 1-264 (292)
48 PLN02353 probable UDP-glucose 99.3 1.3E-10 2.8E-15 124.0 21.1 219 43-330 1-244 (473)
49 PRK05808 3-hydroxybutyryl-CoA 99.3 7.8E-11 1.7E-15 117.6 17.8 180 43-280 3-187 (282)
50 PRK12490 6-phosphogluconate de 99.3 7.4E-11 1.6E-15 119.0 17.6 197 44-334 1-206 (299)
51 PRK08293 3-hydroxybutyryl-CoA 99.3 1.5E-10 3.2E-15 116.0 19.3 183 43-280 3-190 (287)
52 PRK05479 ketol-acid reductoiso 99.3 4.6E-10 1E-14 114.4 22.8 200 44-326 18-239 (330)
53 PRK12557 H(2)-dependent methyl 99.3 1.4E-10 3E-15 119.2 18.8 164 44-275 1-193 (342)
54 PTZ00142 6-phosphogluconate de 99.3 3.2E-11 6.9E-16 128.6 14.5 158 43-270 1-162 (470)
55 PF02558 ApbA: Ketopantoate re 99.3 1.2E-11 2.5E-16 111.6 8.4 116 46-223 1-116 (151)
56 PRK06129 3-hydroxyacyl-CoA deh 99.3 5.2E-10 1.1E-14 113.3 20.3 209 43-333 2-215 (308)
57 PF03721 UDPG_MGDP_dh_N: UDP-g 99.3 6.9E-11 1.5E-15 111.4 12.8 170 44-263 1-185 (185)
58 PRK07530 3-hydroxybutyryl-CoA 99.3 3.3E-10 7.2E-15 113.6 18.6 178 43-279 4-187 (292)
59 PRK09260 3-hydroxybutyryl-CoA 99.2 4.7E-10 1E-14 112.4 19.3 180 44-280 2-186 (288)
60 TIGR00465 ilvC ketol-acid redu 99.2 4.3E-10 9.3E-15 114.3 18.6 163 44-286 4-189 (314)
61 PLN02545 3-hydroxybutyryl-CoA 99.2 1.2E-09 2.5E-14 109.9 20.0 181 43-280 4-188 (295)
62 PF02737 3HCDH_N: 3-hydroxyacy 99.2 2E-10 4.4E-15 107.6 13.1 173 45-276 1-179 (180)
63 PLN02350 phosphogluconate dehy 99.2 7.2E-10 1.6E-14 118.7 17.8 208 39-334 2-221 (493)
64 TIGR00112 proC pyrroline-5-car 99.2 1.2E-09 2.6E-14 107.2 17.5 148 148-333 31-180 (245)
65 PLN02858 fructose-bisphosphate 99.2 6.5E-10 1.4E-14 131.7 18.4 206 38-335 319-530 (1378)
66 PRK08655 prephenate dehydrogen 99.2 3.1E-09 6.6E-14 112.8 21.2 211 44-331 1-222 (437)
67 PRK08507 prephenate dehydrogen 99.1 1.2E-09 2.6E-14 108.8 16.3 169 44-285 1-177 (275)
68 PLN02858 fructose-bisphosphate 99.1 1.4E-09 2.9E-14 129.0 18.5 290 43-460 4-312 (1378)
69 COG2085 Predicted dinucleotide 99.1 1.7E-09 3.7E-14 102.8 15.1 164 43-272 1-176 (211)
70 COG0677 WecC UDP-N-acetyl-D-ma 99.1 3.6E-09 7.8E-14 108.4 18.4 216 41-328 7-241 (436)
71 PRK07066 3-hydroxybutyryl-CoA 99.1 6.5E-09 1.4E-13 105.9 20.2 176 43-280 7-189 (321)
72 PRK07417 arogenate dehydrogena 99.1 3E-09 6.4E-14 106.3 16.0 170 44-289 1-180 (279)
73 PRK07502 cyclohexadienyl dehyd 99.0 5.1E-09 1.1E-13 105.9 16.0 166 39-274 2-177 (307)
74 PRK07819 3-hydroxybutyryl-CoA 99.0 1.7E-08 3.6E-13 101.4 19.1 179 43-280 5-191 (286)
75 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.0 1.4E-08 2.9E-13 109.6 18.5 178 43-280 5-189 (503)
76 PLN02256 arogenate dehydrogena 99.0 1.2E-08 2.5E-13 103.4 15.6 168 24-275 22-203 (304)
77 TIGR00873 gnd 6-phosphoglucona 99.0 7.1E-09 1.5E-13 110.7 14.7 155 45-270 1-159 (467)
78 PRK08268 3-hydroxy-acyl-CoA de 98.9 4E-08 8.6E-13 106.1 19.2 178 43-279 7-190 (507)
79 PRK06545 prephenate dehydrogen 98.9 1.4E-08 3.1E-13 105.1 15.0 161 44-274 1-172 (359)
80 PRK11730 fadB multifunctional 98.9 5.1E-08 1.1E-12 109.4 18.9 181 43-282 313-499 (715)
81 COG1250 FadB 3-hydroxyacyl-CoA 98.9 1.5E-08 3.2E-13 102.3 12.0 178 43-279 3-186 (307)
82 TIGR02440 FadJ fatty oxidation 98.9 9.2E-08 2E-12 107.1 19.3 182 43-283 304-492 (699)
83 TIGR02437 FadB fatty oxidation 98.8 6.8E-08 1.5E-12 108.3 16.5 181 42-281 312-498 (714)
84 PRK11154 fadJ multifunctional 98.8 1.4E-07 3.1E-12 105.8 18.6 181 43-282 309-496 (708)
85 TIGR02441 fa_ox_alpha_mit fatt 98.8 6E-08 1.3E-12 109.0 15.3 179 43-280 335-519 (737)
86 KOG0409 Predicted dehydrogenas 98.8 2.8E-07 6E-12 91.6 17.1 199 43-335 35-239 (327)
87 PRK14806 bifunctional cyclohex 98.8 1.3E-07 2.9E-12 106.4 16.7 157 44-274 4-175 (735)
88 PF10727 Rossmann-like: Rossma 98.8 8E-09 1.7E-13 91.6 4.9 99 41-202 8-109 (127)
89 PRK11199 tyrA bifunctional cho 98.7 3.6E-07 7.8E-12 95.2 17.2 141 42-276 97-242 (374)
90 COG0287 TyrA Prephenate dehydr 98.7 4.4E-07 9.6E-12 90.8 14.2 161 42-275 2-170 (279)
91 KOG2666 UDP-glucose/GDP-mannos 98.6 8.1E-07 1.8E-11 88.6 14.7 227 43-329 1-254 (481)
92 KOG3124 Pyrroline-5-carboxylat 98.6 2.2E-07 4.8E-12 90.4 10.5 163 44-279 1-164 (267)
93 PRK02318 mannitol-1-phosphate 98.6 1.2E-07 2.5E-12 99.1 8.6 236 44-330 1-266 (381)
94 PLN02712 arogenate dehydrogena 98.6 7.5E-07 1.6E-11 99.2 15.0 156 42-274 368-535 (667)
95 PRK13403 ketol-acid reductoiso 98.6 1.3E-05 2.8E-10 81.5 21.7 222 44-357 17-259 (335)
96 PLN02712 arogenate dehydrogena 98.6 1.5E-06 3.2E-11 96.9 16.3 157 42-275 51-219 (667)
97 PRK08818 prephenate dehydrogen 98.5 2.2E-06 4.7E-11 89.1 14.2 142 43-275 4-154 (370)
98 PRK06223 malate dehydrogenase; 98.4 4.2E-06 9.2E-11 84.6 13.3 105 43-201 2-123 (307)
99 PRK12480 D-lactate dehydrogena 98.4 1.8E-06 4E-11 88.5 10.0 94 42-203 145-240 (330)
100 TIGR01724 hmd_rel H2-forming N 98.3 5.6E-06 1.2E-10 83.7 12.9 168 44-279 1-198 (341)
101 KOG2304 3-hydroxyacyl-CoA dehy 98.3 1.3E-07 2.8E-12 90.4 0.7 127 41-202 9-137 (298)
102 TIGR01763 MalateDH_bact malate 98.3 8.9E-06 1.9E-10 82.6 12.5 104 44-201 2-122 (305)
103 PRK09287 6-phosphogluconate de 98.2 1.8E-05 3.8E-10 84.6 13.9 146 54-270 1-150 (459)
104 PTZ00082 L-lactate dehydrogena 98.2 1.3E-05 2.9E-10 81.9 12.0 40 41-85 4-43 (321)
105 PRK08269 3-hydroxybutyryl-CoA 98.2 7.8E-05 1.7E-09 76.0 17.3 112 147-279 64-183 (314)
106 PTZ00117 malate dehydrogenase; 98.1 2.6E-05 5.7E-10 79.6 12.9 107 42-201 4-126 (319)
107 PRK08605 D-lactate dehydrogena 98.1 1.1E-05 2.3E-10 82.9 10.0 96 42-203 145-242 (332)
108 cd05297 GH4_alpha_glucosidase_ 98.1 4.4E-06 9.6E-11 88.5 7.3 87 44-175 1-89 (423)
109 PF00056 Ldh_1_N: lactate/mala 98.1 3.1E-05 6.8E-10 69.8 11.5 121 44-227 1-138 (141)
110 PF07991 IlvN: Acetohydroxy ac 98.1 2.5E-05 5.4E-10 71.8 10.2 94 43-202 4-99 (165)
111 cd01339 LDH-like_MDH L-lactate 97.9 0.00011 2.4E-09 74.2 11.4 102 46-201 1-119 (300)
112 cd00650 LDH_MDH_like NAD-depen 97.9 0.0002 4.4E-09 70.9 12.8 106 46-201 1-123 (263)
113 PLN02602 lactate dehydrogenase 97.8 0.00034 7.4E-09 72.4 14.4 64 18-86 8-76 (350)
114 PF01113 DapB_N: Dihydrodipico 97.8 0.00014 3E-09 64.1 9.6 122 44-236 1-124 (124)
115 cd05291 HicDH_like L-2-hydroxy 97.8 0.00022 4.7E-09 72.4 12.2 39 44-86 1-39 (306)
116 PRK15076 alpha-galactosidase; 97.8 0.00016 3.4E-09 76.9 11.5 82 43-169 1-84 (431)
117 PRK13304 L-aspartate dehydroge 97.8 0.00014 3.1E-09 72.2 10.2 82 43-182 1-83 (265)
118 cd05292 LDH_2 A subgroup of L- 97.8 0.00025 5.4E-09 72.1 12.0 39 44-86 1-39 (308)
119 COG4007 Predicted dehydrogenas 97.7 0.00031 6.8E-09 68.7 10.9 165 43-275 1-194 (340)
120 PF08546 ApbA_C: Ketopantoate 97.7 0.00028 6E-09 61.7 9.8 117 276-423 1-123 (125)
121 PRK06444 prephenate dehydrogen 97.7 9.4E-05 2E-09 70.5 7.3 23 44-67 1-24 (197)
122 COG0059 IlvC Ketol-acid reduct 97.7 0.0028 6.1E-08 63.6 17.5 200 44-326 19-240 (338)
123 PRK05225 ketol-acid reductoiso 97.6 0.0016 3.5E-08 69.0 16.0 100 44-203 37-136 (487)
124 cd05293 LDH_1 A subgroup of L- 97.6 0.00083 1.8E-08 68.5 12.8 40 43-86 3-42 (312)
125 PRK07574 formate dehydrogenase 97.6 0.00041 8.9E-09 72.6 10.2 95 43-201 192-288 (385)
126 PF01408 GFO_IDH_MocA: Oxidore 97.5 0.00072 1.6E-08 58.1 10.0 94 44-202 1-97 (120)
127 PRK13243 glyoxylate reductase; 97.5 0.00039 8.5E-09 71.5 9.6 94 42-201 149-244 (333)
128 COG1023 Gnd Predicted 6-phosph 97.5 0.00072 1.6E-08 65.7 10.7 142 44-266 1-151 (300)
129 PRK15469 ghrA bifunctional gly 97.5 0.00071 1.5E-08 69.0 11.3 94 43-202 136-231 (312)
130 cd05213 NAD_bind_Glutamyl_tRNA 97.5 0.00068 1.5E-08 69.0 11.0 109 29-198 166-274 (311)
131 PRK13302 putative L-aspartate 97.5 0.00051 1.1E-08 68.6 9.8 82 42-181 5-88 (271)
132 PRK00066 ldh L-lactate dehydro 97.5 0.0012 2.7E-08 67.3 12.3 41 42-86 5-45 (315)
133 PLN03139 formate dehydrogenase 97.5 0.00057 1.2E-08 71.6 9.8 95 42-200 198-294 (386)
134 PF02826 2-Hacid_dh_C: D-isome 97.5 0.0005 1.1E-08 64.2 8.5 97 40-201 33-131 (178)
135 PF01488 Shikimate_DH: Shikima 97.5 0.00042 9.2E-09 61.8 7.6 41 42-87 11-51 (135)
136 PF02153 PDH: Prephenate dehyd 97.4 0.0031 6.8E-08 62.4 14.4 106 155-274 40-156 (258)
137 cd05290 LDH_3 A subgroup of L- 97.4 0.0016 3.4E-08 66.3 12.3 38 45-86 1-38 (307)
138 cd00300 LDH_like L-lactate deh 97.4 0.0012 2.6E-08 66.8 11.3 38 46-87 1-38 (300)
139 cd05294 LDH-like_MDH_nadp A la 97.4 0.0012 2.6E-08 67.2 11.1 35 44-82 1-36 (309)
140 cd01065 NAD_bind_Shikimate_DH 97.4 0.00051 1.1E-08 61.8 7.5 40 42-86 18-57 (155)
141 KOG2305 3-hydroxyacyl-CoA dehy 97.4 0.0014 2.9E-08 63.4 10.3 120 44-202 4-125 (313)
142 PRK06141 ornithine cyclodeamin 97.4 0.00064 1.4E-08 69.3 8.6 77 42-171 124-200 (314)
143 TIGR01759 MalateDH-SF1 malate 97.3 0.0026 5.5E-08 65.3 12.6 40 42-82 2-44 (323)
144 cd01338 MDH_choloroplast_like 97.3 0.0016 3.5E-08 66.7 10.9 40 43-83 2-44 (322)
145 PRK00048 dihydrodipicolinate r 97.3 0.002 4.3E-08 63.8 10.9 95 43-203 1-97 (257)
146 PRK05442 malate dehydrogenase; 97.3 0.0031 6.7E-08 64.7 12.4 40 42-82 3-45 (326)
147 TIGR00036 dapB dihydrodipicoli 97.2 0.0039 8.6E-08 62.1 12.4 74 148-238 56-129 (266)
148 TIGR02853 spore_dpaA dipicolin 97.2 0.00094 2E-08 67.3 8.0 37 42-84 150-186 (287)
149 COG0039 Mdh Malate/lactate deh 97.2 0.0032 6.8E-08 64.1 11.6 37 44-84 1-37 (313)
150 cd01337 MDH_glyoxysomal_mitoch 97.2 0.0037 8E-08 63.7 12.0 34 44-81 1-35 (310)
151 PRK06436 glycerate dehydrogena 97.2 0.0013 2.9E-08 66.7 8.5 91 42-201 121-213 (303)
152 PRK13581 D-3-phosphoglycerate 97.2 0.0014 3E-08 71.6 9.0 94 42-201 139-234 (526)
153 KOG2380 Prephenate dehydrogena 97.2 0.005 1.1E-07 62.7 12.1 153 44-270 53-214 (480)
154 TIGR01327 PGDH D-3-phosphoglyc 97.2 0.0013 2.9E-08 71.6 8.8 93 43-200 138-232 (525)
155 PLN00106 malate dehydrogenase 97.2 0.0077 1.7E-07 61.7 13.8 48 31-82 6-54 (323)
156 PRK08618 ornithine cyclodeamin 97.2 0.0017 3.8E-08 66.4 9.2 95 42-196 126-220 (325)
157 PF02056 Glyco_hydro_4: Family 97.1 0.004 8.6E-08 58.7 10.7 85 45-174 1-87 (183)
158 PF01118 Semialdhyde_dh: Semia 97.1 0.0034 7.3E-08 54.8 9.6 97 45-200 1-100 (121)
159 TIGR02371 ala_DH_arch alanine 97.1 0.0023 4.9E-08 65.6 9.8 77 42-171 127-203 (325)
160 TIGR02354 thiF_fam2 thiamine b 97.1 0.0034 7.5E-08 59.9 10.3 33 44-81 22-54 (200)
161 PRK00257 erythronate-4-phospha 97.1 0.0015 3.3E-08 68.4 8.0 91 43-202 116-212 (381)
162 PRK08291 ectoine utilization p 97.1 0.0019 4E-08 66.3 8.4 79 41-171 130-208 (330)
163 COG0362 Gnd 6-phosphogluconate 97.1 0.0031 6.7E-08 65.4 9.8 152 43-265 3-158 (473)
164 TIGR01757 Malate-DH_plant mala 97.1 0.0092 2E-07 62.6 13.5 44 42-86 43-91 (387)
165 cd05197 GH4_glycoside_hydrolas 97.0 0.0045 9.7E-08 65.8 11.2 111 44-202 1-148 (425)
166 PRK12549 shikimate 5-dehydroge 97.0 0.0054 1.2E-07 61.7 11.2 67 14-87 100-166 (284)
167 TIGR01772 MDH_euk_gproteo mala 97.0 0.0068 1.5E-07 61.8 11.9 34 45-82 1-35 (312)
168 COG0111 SerA Phosphoglycerate 97.0 0.0026 5.6E-08 65.2 8.8 98 40-203 139-239 (324)
169 PRK15438 erythronate-4-phospha 97.0 0.0019 4.2E-08 67.4 7.9 91 42-201 115-211 (378)
170 PRK11790 D-3-phosphoglycerate 97.0 0.0031 6.6E-08 66.7 9.5 93 42-202 150-244 (409)
171 cd01492 Aos1_SUMO Ubiquitin ac 97.0 0.0034 7.4E-08 59.8 8.9 50 28-82 3-55 (197)
172 PF10100 DUF2338: Uncharacteri 97.0 0.012 2.6E-07 61.3 13.3 237 43-330 1-273 (429)
173 cd00704 MDH Malate dehydrogena 97.0 0.0062 1.3E-07 62.4 11.2 38 44-82 1-41 (323)
174 COG0569 TrkA K+ transport syst 97.0 0.0031 6.7E-08 61.3 8.4 88 44-183 1-89 (225)
175 PLN00203 glutamyl-tRNA reducta 96.9 0.0022 4.7E-08 69.8 7.9 53 29-86 252-304 (519)
176 COG1748 LYS9 Saccharopine dehy 96.9 0.0023 5.1E-08 66.8 7.8 88 43-180 1-88 (389)
177 COG2344 AT-rich DNA-binding pr 96.9 0.0038 8.2E-08 58.7 8.3 98 24-182 67-168 (211)
178 PRK13303 L-aspartate dehydroge 96.9 0.0057 1.2E-07 60.9 9.8 46 148-199 49-94 (265)
179 PRK08410 2-hydroxyacid dehydro 96.9 0.0046 1E-07 63.0 9.2 91 42-201 144-236 (311)
180 PRK09496 trkA potassium transp 96.9 0.0037 8E-08 66.2 8.8 38 44-87 1-38 (453)
181 TIGR00507 aroE shikimate 5-deh 96.9 0.0095 2.1E-07 59.3 11.1 65 14-86 90-154 (270)
182 PRK07589 ornithine cyclodeamin 96.8 0.0055 1.2E-07 63.4 9.6 95 42-194 128-222 (346)
183 cd05298 GH4_GlvA_pagL_like Gly 96.8 0.013 2.7E-07 62.6 12.6 52 147-202 61-148 (437)
184 cd01336 MDH_cytoplasmic_cytoso 96.8 0.011 2.5E-07 60.5 11.7 39 43-82 2-43 (325)
185 PRK08306 dipicolinate synthase 96.8 0.006 1.3E-07 61.7 9.5 36 43-84 152-187 (296)
186 cd05296 GH4_P_beta_glucosidase 96.8 0.011 2.5E-07 62.6 11.9 22 147-168 62-83 (419)
187 TIGR01758 MDH_euk_cyt malate d 96.8 0.014 3E-07 59.9 12.1 38 45-83 1-41 (324)
188 PLN02928 oxidoreductase family 96.8 0.0044 9.6E-08 64.1 8.5 107 42-201 158-266 (347)
189 PRK13940 glutamyl-tRNA reducta 96.8 0.0042 9E-08 65.8 8.4 51 29-86 169-219 (414)
190 PRK07340 ornithine cyclodeamin 96.8 0.006 1.3E-07 62.0 9.2 42 42-87 124-165 (304)
191 PRK05086 malate dehydrogenase; 96.8 0.01 2.2E-07 60.5 10.8 37 44-83 1-38 (312)
192 cd01487 E1_ThiF_like E1_ThiF_l 96.7 0.016 3.6E-07 54.0 11.2 33 45-82 1-33 (174)
193 PRK05472 redox-sensing transcr 96.7 0.0057 1.2E-07 58.8 8.2 53 24-83 67-121 (213)
194 PLN00112 malate dehydrogenase 96.7 0.023 4.9E-07 60.6 13.4 44 42-86 99-147 (444)
195 COG2423 Predicted ornithine cy 96.7 0.0057 1.2E-07 62.8 8.4 95 42-195 129-223 (330)
196 COG1712 Predicted dinucleotide 96.7 0.015 3.3E-07 56.2 10.6 82 44-182 1-82 (255)
197 PRK00436 argC N-acetyl-gamma-g 96.7 0.01 2.2E-07 61.4 10.2 40 157-202 65-104 (343)
198 TIGR02992 ectoine_eutC ectoine 96.7 0.0064 1.4E-07 62.3 8.7 79 42-172 128-206 (326)
199 cd01075 NAD_bind_Leu_Phe_Val_D 96.7 0.011 2.5E-07 56.3 9.8 41 40-86 25-65 (200)
200 PTZ00325 malate dehydrogenase; 96.7 0.014 3.1E-07 59.7 11.1 36 42-81 7-43 (321)
201 PRK09496 trkA potassium transp 96.7 0.012 2.6E-07 62.4 11.0 56 26-87 214-269 (453)
202 PF00899 ThiF: ThiF family; I 96.7 0.034 7.3E-07 49.3 12.2 34 44-82 3-36 (135)
203 PRK00045 hemA glutamyl-tRNA re 96.7 0.0068 1.5E-07 64.3 8.9 39 42-85 181-219 (423)
204 TIGR02356 adenyl_thiF thiazole 96.6 0.021 4.6E-07 54.4 11.4 34 44-82 22-55 (202)
205 PF02423 OCD_Mu_crystall: Orni 96.6 0.0095 2E-07 60.8 9.2 78 42-172 127-204 (313)
206 PRK00258 aroE shikimate 5-dehy 96.6 0.017 3.6E-07 57.9 10.8 67 14-86 95-161 (278)
207 PRK14194 bifunctional 5,10-met 96.6 0.0062 1.3E-07 61.7 7.6 33 43-81 159-192 (301)
208 PLN02306 hydroxypyruvate reduc 96.5 0.012 2.5E-07 61.9 9.7 110 42-200 164-275 (386)
209 PRK06407 ornithine cyclodeamin 96.5 0.0084 1.8E-07 60.8 8.3 79 42-172 116-194 (301)
210 PRK06487 glycerate dehydrogena 96.5 0.0097 2.1E-07 60.8 8.7 89 42-201 147-237 (317)
211 PRK06823 ornithine cyclodeamin 96.5 0.014 3.1E-07 59.6 9.8 96 41-196 126-221 (315)
212 PRK15409 bifunctional glyoxyla 96.5 0.013 2.7E-07 60.2 9.4 95 42-201 144-240 (323)
213 TIGR01035 hemA glutamyl-tRNA r 96.5 0.0086 1.9E-07 63.5 8.1 47 32-85 171-217 (417)
214 COG0373 HemA Glutamyl-tRNA red 96.4 0.0096 2.1E-07 62.7 8.1 52 29-87 166-217 (414)
215 cd01483 E1_enzyme_family Super 96.4 0.037 8E-07 49.4 10.9 33 45-82 1-33 (143)
216 COG1052 LdhA Lactate dehydroge 96.4 0.012 2.7E-07 60.3 8.7 92 43-200 146-239 (324)
217 cd00757 ThiF_MoeB_HesA_family 96.4 0.011 2.3E-07 57.5 7.8 34 44-82 22-55 (228)
218 PRK06046 alanine dehydrogenase 96.4 0.012 2.7E-07 60.2 8.5 41 42-86 128-168 (326)
219 PLN02494 adenosylhomocysteinas 96.4 0.021 4.5E-07 61.2 10.3 66 8-83 221-288 (477)
220 TIGR01771 L-LDH-NAD L-lactate 96.4 0.027 5.9E-07 57.1 10.7 35 48-86 1-35 (299)
221 PF02629 CoA_binding: CoA bind 96.4 0.039 8.5E-07 46.2 9.9 80 43-182 3-84 (96)
222 PRK06932 glycerate dehydrogena 96.3 0.012 2.7E-07 60.0 8.1 91 42-202 146-238 (314)
223 PRK12475 thiamine/molybdopteri 96.3 0.017 3.7E-07 59.6 8.9 34 44-82 25-58 (338)
224 TIGR01921 DAP-DH diaminopimela 96.2 0.02 4.4E-07 58.6 8.9 35 43-82 3-38 (324)
225 PRK14188 bifunctional 5,10-met 96.2 0.013 2.7E-07 59.4 7.3 31 43-79 158-189 (296)
226 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.021 4.5E-07 53.1 8.0 44 30-81 33-77 (168)
227 TIGR01809 Shik-DH-AROM shikima 96.1 0.046 1E-06 54.9 11.0 68 15-87 97-164 (282)
228 TIGR01850 argC N-acetyl-gamma- 96.1 0.032 6.9E-07 57.7 9.9 44 153-202 61-104 (346)
229 cd01486 Apg7 Apg7 is an E1-lik 96.1 0.027 5.9E-07 57.1 9.0 43 154-201 102-144 (307)
230 PRK08328 hypothetical protein; 96.1 0.034 7.3E-07 54.3 9.4 55 27-86 8-65 (231)
231 TIGR00936 ahcY adenosylhomocys 96.1 0.068 1.5E-06 56.5 12.2 68 8-83 162-229 (406)
232 PRK11579 putative oxidoreducta 96.0 0.045 9.9E-07 56.2 10.7 46 150-202 52-99 (346)
233 cd00401 AdoHcyase S-adenosyl-L 96.0 0.072 1.6E-06 56.4 12.2 69 8-84 169-237 (413)
234 PRK05476 S-adenosyl-L-homocyst 96.0 0.067 1.5E-06 56.9 11.9 48 29-83 199-246 (425)
235 PRK06199 ornithine cyclodeamin 96.0 0.036 7.7E-07 58.1 9.7 81 42-171 154-234 (379)
236 PLN02819 lysine-ketoglutarate 95.9 0.053 1.1E-06 63.4 11.6 43 43-86 569-620 (1042)
237 PRK13301 putative L-aspartate 95.9 0.056 1.2E-06 53.8 10.2 81 43-182 2-84 (267)
238 PRK08644 thiamine biosynthesis 95.9 0.058 1.2E-06 52.0 10.1 34 44-82 29-62 (212)
239 PF00670 AdoHcyase_NAD: S-aden 95.9 0.084 1.8E-06 48.8 10.4 50 27-83 8-57 (162)
240 PRK05597 molybdopterin biosynt 95.9 0.053 1.2E-06 56.3 10.3 34 44-82 29-62 (355)
241 KOG1495 Lactate dehydrogenase 95.8 0.11 2.3E-06 51.7 11.5 108 42-202 19-142 (332)
242 smart00859 Semialdhyde_dh Semi 95.8 0.053 1.2E-06 47.0 8.6 39 159-200 64-102 (122)
243 COG1486 CelF Alpha-galactosida 95.8 0.084 1.8E-06 56.0 11.4 83 43-170 3-87 (442)
244 PF13460 NAD_binding_10: NADH( 95.8 0.037 8.1E-07 50.7 7.9 35 46-86 1-36 (183)
245 cd01485 E1-1_like Ubiquitin ac 95.8 0.075 1.6E-06 50.6 10.0 34 44-82 20-53 (198)
246 PRK12548 shikimate 5-dehydroge 95.7 0.066 1.4E-06 53.9 10.1 62 14-82 99-160 (289)
247 PRK15116 sulfur acceptor prote 95.7 0.098 2.1E-06 52.3 10.9 55 25-84 9-66 (268)
248 PRK09310 aroDE bifunctional 3- 95.6 0.059 1.3E-06 58.2 9.8 65 14-86 305-369 (477)
249 cd01078 NAD_bind_H4MPT_DH NADP 95.6 0.043 9.3E-07 51.6 7.8 38 43-86 28-66 (194)
250 PRK05600 thiamine biosynthesis 95.6 0.082 1.8E-06 55.3 10.4 34 44-82 42-75 (370)
251 PF13380 CoA_binding_2: CoA bi 95.6 0.069 1.5E-06 46.5 8.3 74 44-183 1-78 (116)
252 PLN02968 Probable N-acetyl-gam 95.6 0.043 9.3E-07 57.6 8.2 36 42-82 37-73 (381)
253 KOG0069 Glyoxylate/hydroxypyru 95.5 0.046 1E-06 56.2 8.1 45 153-200 210-256 (336)
254 PRK06718 precorrin-2 dehydroge 95.5 0.066 1.4E-06 51.2 8.7 34 42-81 9-42 (202)
255 PRK08300 acetaldehyde dehydrog 95.5 0.1 2.3E-06 53.0 10.5 36 43-83 4-40 (302)
256 PRK12749 quinate/shikimate deh 95.5 0.17 3.6E-06 51.1 12.0 63 14-83 97-159 (288)
257 PRK07688 thiamine/molybdopteri 95.5 0.036 7.8E-07 57.2 7.3 34 44-82 25-58 (339)
258 COG0673 MviM Predicted dehydro 95.5 0.08 1.7E-06 53.6 9.7 98 42-203 2-103 (342)
259 PRK05690 molybdopterin biosynt 95.5 0.067 1.5E-06 52.7 8.8 35 43-82 32-66 (245)
260 PRK08223 hypothetical protein; 95.4 0.095 2.1E-06 52.9 9.8 53 25-82 6-61 (287)
261 TIGR02355 moeB molybdopterin s 95.3 0.1 2.3E-06 51.2 9.6 37 44-85 25-61 (240)
262 PRK04148 hypothetical protein; 95.3 0.087 1.9E-06 47.3 8.1 88 42-186 16-103 (134)
263 PRK14874 aspartate-semialdehyd 95.3 0.087 1.9E-06 54.2 9.3 96 43-200 1-97 (334)
264 PF03435 Saccharop_dh: Sacchar 95.3 0.037 8.1E-07 57.6 6.6 37 46-87 1-38 (386)
265 PTZ00075 Adenosylhomocysteinas 95.2 0.088 1.9E-06 56.6 9.3 36 42-83 253-288 (476)
266 TIGR00518 alaDH alanine dehydr 95.2 0.095 2.1E-06 54.8 9.4 39 42-86 166-204 (370)
267 PRK05671 aspartate-semialdehyd 95.2 0.11 2.3E-06 53.7 9.6 24 42-65 3-27 (336)
268 PRK06719 precorrin-2 dehydroge 95.1 0.1 2.2E-06 47.9 8.3 33 42-80 12-44 (157)
269 PRK14179 bifunctional 5,10-met 95.1 0.059 1.3E-06 54.2 7.0 30 43-78 158-188 (284)
270 PF02254 TrkA_N: TrkA-N domain 95.0 0.12 2.5E-06 44.1 8.0 36 46-87 1-36 (116)
271 TIGR03215 ac_ald_DH_ac acetald 95.0 0.21 4.7E-06 50.3 10.9 35 44-83 2-37 (285)
272 PRK06153 hypothetical protein; 95.0 0.13 2.8E-06 53.9 9.4 34 44-82 177-210 (393)
273 KOG2653 6-phosphogluconate deh 95.0 0.13 2.7E-06 53.0 9.1 154 41-265 4-161 (487)
274 PF00070 Pyr_redox: Pyridine n 95.0 0.052 1.1E-06 43.5 5.2 35 45-85 1-35 (80)
275 TIGR01381 E1_like_apg7 E1-like 94.9 0.11 2.4E-06 57.6 9.2 34 44-82 339-372 (664)
276 TIGR02717 AcCoA-syn-alpha acet 94.9 0.1 2.3E-06 55.8 8.8 92 42-202 6-101 (447)
277 PRK04207 glyceraldehyde-3-phos 94.9 0.21 4.5E-06 51.7 10.6 35 147-181 65-99 (341)
278 cd05311 NAD_bind_2_malic_enz N 94.7 0.21 4.5E-06 48.7 9.7 36 42-82 24-61 (226)
279 COG4408 Uncharacterized protei 94.7 0.54 1.2E-05 48.0 12.6 238 42-328 3-273 (431)
280 PRK07411 hypothetical protein; 94.7 0.091 2E-06 55.3 7.7 35 43-82 38-72 (390)
281 PRK10669 putative cation:proto 94.7 0.11 2.5E-06 56.9 8.7 39 43-87 417-455 (558)
282 COG0169 AroE Shikimate 5-dehyd 94.7 0.26 5.6E-06 49.7 10.4 68 15-87 98-165 (283)
283 PRK08762 molybdopterin biosynt 94.6 0.33 7.3E-06 50.7 11.5 35 43-82 135-169 (376)
284 PRK12409 D-amino acid dehydrog 94.5 0.046 1E-06 57.1 5.0 33 44-82 2-34 (410)
285 COG0289 DapB Dihydrodipicolina 94.4 0.23 4.9E-06 49.3 9.2 149 42-273 1-151 (266)
286 PRK14027 quinate/shikimate deh 94.4 0.33 7.2E-06 48.9 10.7 67 14-87 100-166 (283)
287 cd00755 YgdL_like Family of ac 94.2 0.67 1.5E-05 45.3 12.0 34 44-82 12-45 (231)
288 cd01484 E1-2_like Ubiquitin ac 94.2 0.35 7.6E-06 47.4 10.0 33 45-82 1-33 (234)
289 COG2910 Putative NADH-flavin r 94.2 0.059 1.3E-06 50.8 4.2 37 44-86 1-38 (211)
290 PRK07878 molybdopterin biosynt 94.1 0.14 3.1E-06 53.9 7.5 34 44-82 43-76 (392)
291 PRK00711 D-amino acid dehydrog 94.1 0.064 1.4E-06 56.0 4.9 33 44-82 1-33 (416)
292 PRK14982 acyl-ACP reductase; P 94.1 0.17 3.7E-06 52.3 7.8 56 25-85 138-194 (340)
293 cd01491 Ube1_repeat1 Ubiquitin 94.1 0.45 9.8E-06 48.0 10.7 35 44-83 20-54 (286)
294 PRK03659 glutathione-regulated 94.1 0.17 3.7E-06 56.2 8.4 39 43-87 400-438 (601)
295 PRK06270 homoserine dehydrogen 94.0 0.32 6.9E-06 50.3 9.7 23 43-65 2-24 (341)
296 CHL00194 ycf39 Ycf39; Provisio 93.9 0.12 2.5E-06 52.3 6.2 34 44-83 1-35 (317)
297 PRK11863 N-acetyl-gamma-glutam 93.8 0.25 5.5E-06 50.5 8.5 38 157-200 47-84 (313)
298 PRK14175 bifunctional 5,10-met 93.8 0.19 4.2E-06 50.6 7.5 33 43-81 158-191 (286)
299 PRK06753 hypothetical protein; 93.6 0.086 1.9E-06 54.2 4.7 34 44-83 1-34 (373)
300 PF03447 NAD_binding_3: Homose 93.5 0.22 4.7E-06 42.9 6.4 47 150-202 47-95 (117)
301 PF05368 NmrA: NmrA-like famil 93.5 0.28 6.2E-06 46.9 7.8 32 46-83 1-33 (233)
302 PRK06349 homoserine dehydrogen 93.4 0.34 7.4E-06 51.6 8.9 23 43-65 3-25 (426)
303 PRK07236 hypothetical protein; 93.3 0.12 2.6E-06 53.6 5.3 36 42-83 5-40 (386)
304 COG0002 ArgC Acetylglutamate s 93.2 0.37 7.9E-06 49.7 8.4 36 42-82 1-37 (349)
305 PF13241 NAD_binding_7: Putati 93.2 0.43 9.2E-06 40.4 7.6 35 42-82 6-40 (103)
306 PRK08664 aspartate-semialdehyd 93.2 0.62 1.3E-05 48.2 10.3 35 43-82 3-38 (349)
307 PRK07877 hypothetical protein; 93.2 0.22 4.7E-06 56.4 7.3 52 26-82 87-141 (722)
308 cd01489 Uba2_SUMO Ubiquitin ac 93.1 0.52 1.1E-05 48.2 9.4 37 45-86 1-37 (312)
309 PRK06847 hypothetical protein; 93.1 0.13 2.8E-06 52.9 5.0 36 42-83 3-38 (375)
310 PRK08163 salicylate hydroxylas 93.1 0.13 2.8E-06 53.3 5.1 35 43-83 4-38 (396)
311 PRK05868 hypothetical protein; 92.9 0.12 2.6E-06 53.6 4.6 35 43-83 1-35 (372)
312 PF01494 FAD_binding_3: FAD bi 92.9 0.15 3.2E-06 51.1 5.0 35 44-84 2-36 (356)
313 PRK03562 glutathione-regulated 92.9 0.36 7.8E-06 53.9 8.5 39 43-87 400-438 (621)
314 PRK06728 aspartate-semialdehyd 92.7 0.88 1.9E-05 47.2 10.5 38 157-200 65-102 (347)
315 PLN02383 aspartate semialdehyd 92.7 0.76 1.6E-05 47.6 10.0 39 156-200 65-103 (344)
316 cd01488 Uba3_RUB Ubiquitin act 92.6 0.34 7.3E-06 49.1 7.1 34 45-83 1-34 (291)
317 PRK08773 2-octaprenyl-3-methyl 92.6 0.16 3.4E-06 52.8 4.9 35 42-82 5-39 (392)
318 PRK07588 hypothetical protein; 92.4 0.16 3.4E-06 52.8 4.6 34 44-83 1-34 (391)
319 TIGR00978 asd_EA aspartate-sem 92.3 0.86 1.9E-05 47.0 9.9 37 156-198 69-105 (341)
320 cd05191 NAD_bind_amino_acid_DH 92.2 0.46 1E-05 38.7 6.3 34 42-80 22-55 (86)
321 PRK08040 putative semialdehyde 92.2 0.9 2E-05 46.9 9.8 97 42-201 3-101 (336)
322 PRK14189 bifunctional 5,10-met 92.1 0.42 9E-06 48.2 7.0 30 43-78 158-188 (285)
323 PRK10206 putative oxidoreducta 92.1 0.65 1.4E-05 47.9 8.6 47 149-202 51-99 (344)
324 PF01266 DAO: FAD dependent ox 92.0 0.22 4.8E-06 49.8 5.1 31 45-81 1-31 (358)
325 PRK07538 hypothetical protein; 92.0 0.19 4E-06 52.8 4.6 34 44-83 1-34 (413)
326 PRK05678 succinyl-CoA syntheta 91.9 1.7 3.6E-05 44.1 11.2 50 149-203 52-103 (291)
327 PRK07494 2-octaprenyl-6-methox 91.9 0.19 4.1E-06 52.0 4.5 34 44-83 8-41 (388)
328 TIGR01470 cysG_Nterm siroheme 91.8 1.3 2.8E-05 42.5 9.8 34 43-82 9-42 (205)
329 TIGR01296 asd_B aspartate-semi 91.8 0.65 1.4E-05 48.0 8.2 38 156-199 57-94 (339)
330 PRK06185 hypothetical protein; 91.8 0.22 4.7E-06 51.9 4.8 36 42-83 5-40 (407)
331 TIGR01761 thiaz-red thiazoliny 91.7 1.2 2.5E-05 46.3 9.9 40 42-86 2-42 (343)
332 PRK14851 hypothetical protein; 91.6 0.73 1.6E-05 52.0 9.0 53 25-82 22-77 (679)
333 COG0665 DadA Glycine/D-amino a 91.6 0.27 5.8E-06 50.5 5.2 35 42-82 3-37 (387)
334 PF08484 Methyltransf_14: C-me 91.6 0.61 1.3E-05 43.1 7.0 96 30-186 55-151 (160)
335 PRK07364 2-octaprenyl-6-methox 91.4 0.26 5.6E-06 51.4 4.9 35 43-83 18-52 (415)
336 COG0654 UbiH 2-polyprenyl-6-me 91.4 0.22 4.8E-06 51.9 4.4 33 43-81 2-34 (387)
337 PF13450 NAD_binding_8: NAD(P) 91.4 0.34 7.3E-06 38.0 4.4 30 48-83 1-30 (68)
338 TIGR01408 Ube1 ubiquitin-activ 91.4 0.71 1.5E-05 54.3 8.8 52 27-83 5-59 (1008)
339 PRK14192 bifunctional 5,10-met 91.2 0.56 1.2E-05 47.3 6.8 33 42-80 158-191 (283)
340 TIGR03219 salicylate_mono sali 91.1 0.25 5.5E-06 51.7 4.6 34 44-83 1-35 (414)
341 PRK11259 solA N-methyltryptoph 91.1 0.27 5.9E-06 50.4 4.7 33 44-82 4-36 (376)
342 PRK06392 homoserine dehydrogen 90.9 1 2.2E-05 46.4 8.5 22 44-65 1-22 (326)
343 TIGR01851 argC_other N-acetyl- 90.9 0.91 2E-05 46.3 8.1 37 156-198 45-81 (310)
344 TIGR02360 pbenz_hydroxyl 4-hyd 90.8 0.31 6.8E-06 50.9 4.9 35 43-83 2-36 (390)
345 TIGR01408 Ube1 ubiquitin-activ 90.8 0.7 1.5E-05 54.3 8.1 57 25-82 398-458 (1008)
346 PRK00683 murD UDP-N-acetylmura 90.5 0.64 1.4E-05 49.1 6.9 34 44-83 4-37 (418)
347 TIGR01377 soxA_mon sarcosine o 90.5 0.32 6.9E-06 50.0 4.5 32 45-82 2-33 (380)
348 PRK05335 tRNA (uracil-5-)-meth 90.4 0.35 7.7E-06 51.5 4.8 35 43-83 2-36 (436)
349 PRK06617 2-octaprenyl-6-methox 90.3 0.31 6.7E-06 50.5 4.3 34 43-82 1-34 (374)
350 PF03059 NAS: Nicotianamine sy 90.3 1.7 3.7E-05 43.7 9.3 106 42-200 120-234 (276)
351 PRK07045 putative monooxygenas 90.3 0.37 8.1E-06 49.9 4.9 36 42-83 4-39 (388)
352 COG0686 Ald Alanine dehydrogen 90.3 0.86 1.9E-05 46.5 7.1 40 40-85 165-204 (371)
353 PRK08374 homoserine dehydrogen 90.3 1.6 3.4E-05 45.1 9.4 42 153-200 82-125 (336)
354 PRK08020 ubiF 2-octaprenyl-3-m 90.3 0.33 7.3E-06 50.2 4.5 35 42-82 4-38 (391)
355 PRK06475 salicylate hydroxylas 90.3 0.35 7.6E-06 50.5 4.7 34 44-83 3-36 (400)
356 PRK14852 hypothetical protein; 90.2 0.85 1.8E-05 53.1 7.9 35 44-83 333-367 (989)
357 PRK10537 voltage-gated potassi 90.1 2 4.3E-05 45.4 10.1 33 43-81 240-272 (393)
358 PLN02464 glycerol-3-phosphate 90.1 0.47 1E-05 53.0 5.7 52 24-81 52-103 (627)
359 PRK12770 putative glutamate sy 89.9 0.52 1.1E-05 48.4 5.5 45 32-83 8-52 (352)
360 TIGR03736 PRTRC_ThiF PRTRC sys 89.9 0.45 9.7E-06 47.0 4.7 40 42-82 10-55 (244)
361 COG0300 DltE Short-chain dehyd 89.8 0.64 1.4E-05 46.5 5.8 41 42-88 5-46 (265)
362 TIGR02028 ChlP geranylgeranyl 89.7 0.41 8.9E-06 50.3 4.6 34 44-83 1-34 (398)
363 PRK10792 bifunctional 5,10-met 89.7 1.2 2.6E-05 44.9 7.7 32 43-80 159-191 (285)
364 PLN02520 bifunctional 3-dehydr 89.7 1.2 2.7E-05 48.7 8.4 66 15-86 343-416 (529)
365 PRK06598 aspartate-semialdehyd 89.6 1.9 4.1E-05 45.1 9.4 38 157-200 62-101 (369)
366 PRK08849 2-octaprenyl-3-methyl 89.6 0.42 9.2E-06 49.6 4.6 33 44-82 4-36 (384)
367 PLN00093 geranylgeranyl diphos 89.6 0.5 1.1E-05 50.7 5.3 36 42-83 38-73 (450)
368 TIGR01988 Ubi-OHases Ubiquinon 89.6 0.4 8.6E-06 49.1 4.4 33 45-83 1-33 (385)
369 PRK08243 4-hydroxybenzoate 3-m 89.6 0.46 1E-05 49.5 4.9 35 43-83 2-36 (392)
370 PLN02172 flavin-containing mon 89.5 0.49 1.1E-05 50.9 5.1 35 43-83 10-44 (461)
371 PRK08013 oxidoreductase; Provi 89.5 0.43 9.3E-06 49.9 4.6 34 44-83 4-37 (400)
372 PRK01747 mnmC bifunctional tRN 89.4 0.4 8.6E-06 53.8 4.5 33 44-82 261-293 (662)
373 PRK12550 shikimate 5-dehydroge 89.4 1.5 3.2E-05 44.0 8.1 65 14-86 96-160 (272)
374 KOG1502 Flavonol reductase/cin 89.3 1.3 2.8E-05 45.6 7.6 37 42-84 5-42 (327)
375 PRK07608 ubiquinone biosynthes 89.2 0.5 1.1E-05 48.7 4.7 35 43-83 5-39 (388)
376 cd05212 NAD_bind_m-THF_DH_Cycl 89.2 2.8 6E-05 37.8 8.9 36 153-196 64-99 (140)
377 PLN02852 ferredoxin-NADP+ redu 89.1 0.61 1.3E-05 50.6 5.5 39 39-83 22-62 (491)
378 TIGR03364 HpnW_proposed FAD de 89.0 0.49 1.1E-05 48.5 4.5 32 45-82 2-33 (365)
379 TIGR03649 ergot_EASG ergot alk 89.0 2.1 4.5E-05 42.2 8.9 34 45-84 1-35 (285)
380 TIGR01318 gltD_gamma_fam gluta 88.8 0.87 1.9E-05 49.0 6.4 35 42-82 140-174 (467)
381 PTZ00188 adrenodoxin reductase 88.7 0.72 1.6E-05 50.0 5.6 44 33-82 30-73 (506)
382 PRK05714 2-octaprenyl-3-methyl 88.6 0.49 1.1E-05 49.3 4.2 33 44-82 3-35 (405)
383 PLN00141 Tic62-NAD(P)-related 88.6 0.72 1.6E-05 44.8 5.2 36 43-84 17-53 (251)
384 PLN02985 squalene monooxygenas 88.5 0.64 1.4E-05 50.7 5.2 35 43-83 43-77 (514)
385 PRK11728 hydroxyglutarate oxid 88.4 0.64 1.4E-05 48.4 5.0 35 44-82 3-37 (393)
386 PRK08850 2-octaprenyl-6-methox 88.4 0.52 1.1E-05 49.2 4.3 32 44-81 5-36 (405)
387 cd00762 NAD_bind_malic_enz NAD 88.2 6.5 0.00014 39.1 11.5 80 151-244 95-178 (254)
388 PRK12266 glpD glycerol-3-phosp 88.1 0.69 1.5E-05 50.3 5.2 33 43-81 6-38 (508)
389 PRK08132 FAD-dependent oxidore 88.1 0.68 1.5E-05 50.6 5.1 36 42-83 22-57 (547)
390 cd01490 Ube1_repeat2 Ubiquitin 88.0 2.6 5.6E-05 45.1 9.2 37 45-82 1-38 (435)
391 TIGR00561 pntA NAD(P) transhyd 88.0 2.3 4.9E-05 46.4 8.9 38 43-86 164-201 (511)
392 PRK09126 hypothetical protein; 88.0 0.62 1.3E-05 48.2 4.5 34 44-83 4-37 (392)
393 PRK15181 Vi polysaccharide bio 87.9 0.84 1.8E-05 46.7 5.4 44 30-82 5-49 (348)
394 PLN02927 antheraxanthin epoxid 87.8 0.66 1.4E-05 52.2 4.8 35 42-82 80-114 (668)
395 PTZ00367 squalene epoxidase; P 87.8 0.83 1.8E-05 50.5 5.5 34 43-82 33-66 (567)
396 PRK06126 hypothetical protein; 87.8 0.71 1.5E-05 50.3 5.0 35 43-83 7-41 (545)
397 PRK12829 short chain dehydroge 87.6 1.1 2.4E-05 43.1 5.8 45 33-85 3-48 (264)
398 PRK12810 gltD glutamate syntha 87.5 0.82 1.8E-05 49.1 5.3 35 43-83 143-177 (471)
399 PF00743 FMO-like: Flavin-bind 87.5 0.75 1.6E-05 50.4 5.0 34 44-83 2-35 (531)
400 PRK11749 dihydropyrimidine deh 87.5 0.77 1.7E-05 49.0 5.0 36 42-83 139-174 (457)
401 PLN02686 cinnamoyl-CoA reducta 87.5 1.3 2.9E-05 45.8 6.6 56 23-84 8-89 (367)
402 KOG1494 NAD-dependent malate d 87.4 2.5 5.4E-05 42.6 8.0 45 33-81 18-63 (345)
403 PRK12814 putative NADPH-depend 87.3 0.86 1.9E-05 51.2 5.4 36 42-83 192-227 (652)
404 TIGR01019 sucCoAalpha succinyl 87.3 5.8 0.00013 40.1 10.8 49 149-202 50-100 (286)
405 PRK13369 glycerol-3-phosphate 87.3 0.81 1.7E-05 49.6 5.1 34 43-82 6-39 (502)
406 PRK12769 putative oxidoreducta 87.2 1.4 3E-05 49.4 7.1 35 42-82 326-360 (654)
407 PRK12809 putative oxidoreducta 87.2 1.4 3E-05 49.4 7.0 35 43-83 310-344 (639)
408 PRK00536 speE spermidine synth 87.1 4.2 9E-05 40.6 9.6 100 42-200 72-173 (262)
409 PRK05884 short chain dehydroge 87.1 0.97 2.1E-05 43.1 5.0 37 44-86 1-38 (223)
410 COG1648 CysG Siroheme synthase 87.0 3.9 8.5E-05 39.4 9.1 35 42-82 11-45 (210)
411 PRK11101 glpA sn-glycerol-3-ph 87.0 0.88 1.9E-05 50.0 5.2 33 44-82 7-39 (546)
412 PRK12779 putative bifunctional 87.0 0.88 1.9E-05 53.3 5.4 37 40-82 303-339 (944)
413 cd01493 APPBP1_RUB Ubiquitin a 87.0 2.7 5.8E-05 44.9 8.6 50 28-82 2-54 (425)
414 PLN03075 nicotianamine synthas 86.9 6.9 0.00015 39.8 11.1 42 42-87 123-164 (296)
415 PRK08017 oxidoreductase; Provi 86.9 1 2.2E-05 43.3 5.1 36 44-85 3-39 (256)
416 PRK08244 hypothetical protein; 86.9 0.8 1.7E-05 49.3 4.7 34 44-83 3-36 (493)
417 TIGR01373 soxB sarcosine oxida 86.9 0.97 2.1E-05 47.1 5.2 34 45-82 32-65 (407)
418 TIGR02032 GG-red-SF geranylger 86.8 0.86 1.9E-05 44.5 4.6 33 45-83 2-34 (295)
419 TIGR00137 gid_trmFO tRNA:m(5)U 86.8 0.75 1.6E-05 49.1 4.3 33 45-83 2-34 (433)
420 cd05312 NAD_bind_1_malic_enz N 86.7 2.6 5.5E-05 42.5 7.8 46 152-201 95-144 (279)
421 PRK06183 mhpA 3-(3-hydroxyphen 86.5 0.97 2.1E-05 49.3 5.2 36 42-83 9-44 (538)
422 COG1064 AdhP Zn-dependent alco 86.4 3.7 8E-05 42.5 9.0 37 44-86 168-204 (339)
423 PRK11445 putative oxidoreducta 86.3 0.85 1.8E-05 46.9 4.4 34 43-83 1-34 (351)
424 PRK07023 short chain dehydroge 86.3 1 2.2E-05 43.2 4.6 35 43-83 1-36 (243)
425 COG0644 FixC Dehydrogenases (f 86.3 0.94 2E-05 47.4 4.8 35 43-83 3-37 (396)
426 PRK13512 coenzyme A disulfide 86.2 1 2.3E-05 47.8 5.1 36 43-82 1-36 (438)
427 PF00185 OTCace: Aspartate/orn 86.2 12 0.00026 34.3 11.4 33 44-82 3-37 (158)
428 KOG1399 Flavin-containing mono 86.0 0.82 1.8E-05 49.1 4.2 35 43-83 6-40 (448)
429 PRK10538 malonic semialdehyde 86.0 1.2 2.5E-05 43.0 4.9 36 44-85 1-37 (248)
430 TIGR00031 UDP-GALP_mutase UDP- 85.8 1 2.3E-05 47.2 4.8 33 44-82 2-34 (377)
431 PLN02214 cinnamoyl-CoA reducta 85.8 1.3 2.8E-05 45.4 5.3 41 37-83 4-45 (342)
432 PRK12831 putative oxidoreducta 85.8 1.2 2.7E-05 47.8 5.5 35 42-82 139-173 (464)
433 PRK07523 gluconate 5-dehydroge 85.8 1.5 3.2E-05 42.3 5.6 37 43-85 10-47 (255)
434 TIGR01292 TRX_reduct thioredox 85.8 1 2.2E-05 44.2 4.5 32 45-82 2-33 (300)
435 COG3349 Uncharacterized conser 85.7 0.93 2E-05 48.9 4.4 33 44-82 1-33 (485)
436 PRK05562 precorrin-2 dehydroge 85.7 3.6 7.9E-05 40.1 8.1 33 43-81 25-57 (223)
437 PRK05257 malate:quinone oxidor 85.6 1.1 2.4E-05 48.6 5.1 36 43-82 5-40 (494)
438 PRK06184 hypothetical protein; 85.6 1 2.2E-05 48.6 4.8 34 44-83 4-37 (502)
439 PRK07774 short chain dehydroge 85.6 1.8 3.8E-05 41.4 6.0 36 44-85 7-43 (250)
440 PRK11908 NAD-dependent epimera 85.5 1.2 2.6E-05 45.4 5.0 36 43-83 1-37 (347)
441 PRK07454 short chain dehydroge 85.4 1.6 3.4E-05 41.7 5.4 37 42-84 5-42 (241)
442 PRK08340 glucose-1-dehydrogena 85.3 1.4 3.1E-05 42.7 5.2 37 44-86 1-38 (259)
443 TIGR01745 asd_gamma aspartate- 85.2 4.4 9.6E-05 42.4 8.9 39 157-201 61-101 (366)
444 TIGR03140 AhpF alkyl hydropero 85.0 2.1 4.5E-05 46.6 6.8 57 17-79 180-242 (515)
445 PRK05732 2-octaprenyl-6-methox 85.0 1 2.3E-05 46.4 4.3 34 43-81 3-38 (395)
446 PRK07845 flavoprotein disulfid 85.0 1.2 2.5E-05 47.9 4.8 34 43-82 1-34 (466)
447 PRK00676 hemA glutamyl-tRNA re 84.9 2.1 4.5E-05 44.3 6.3 46 31-83 164-209 (338)
448 TIGR01316 gltA glutamate synth 84.8 1.3 2.8E-05 47.3 5.1 34 43-82 133-166 (449)
449 PF03949 Malic_M: Malic enzyme 84.8 2.7 6E-05 41.7 6.9 113 43-202 25-146 (255)
450 TIGR01989 COQ6 Ubiquinone bios 84.7 1 2.2E-05 47.8 4.1 31 45-81 2-36 (437)
451 PRK05993 short chain dehydroge 84.6 1.7 3.7E-05 42.8 5.4 37 44-86 5-42 (277)
452 PRK08267 short chain dehydroge 84.5 1.7 3.7E-05 42.0 5.3 37 44-86 2-39 (260)
453 cd05295 MDH_like Malate dehydr 84.5 24 0.00052 38.0 14.3 39 42-81 122-163 (452)
454 PRK14176 bifunctional 5,10-met 84.5 3.5 7.7E-05 41.7 7.6 31 43-79 164-195 (287)
455 PRK10157 putative oxidoreducta 84.4 1.3 2.8E-05 47.0 4.8 34 43-82 5-38 (428)
456 PRK07102 short chain dehydroge 84.4 1.5 3.3E-05 41.9 4.9 38 43-86 1-39 (243)
457 PF02882 THF_DHG_CYH_C: Tetrah 84.3 3.8 8.3E-05 37.8 7.2 33 42-80 35-68 (160)
458 PRK07326 short chain dehydroge 84.2 2.1 4.5E-05 40.6 5.7 36 44-85 7-43 (237)
459 PRK08294 phenol 2-monooxygenas 84.2 1.2 2.6E-05 49.9 4.6 36 43-84 32-68 (634)
460 TIGR02023 BchP-ChlP geranylger 84.1 1.3 2.8E-05 46.1 4.5 31 45-81 2-32 (388)
461 PRK12939 short chain dehydroge 83.9 2.3 5E-05 40.4 5.9 38 43-86 7-45 (250)
462 PRK05653 fabG 3-ketoacyl-(acyl 83.8 1.9 4.2E-05 40.7 5.3 36 44-85 6-42 (246)
463 PRK13394 3-hydroxybutyrate deh 83.7 2.4 5.1E-05 40.8 5.9 38 43-86 7-45 (262)
464 COG4091 Predicted homoserine d 83.6 11 0.00024 39.2 10.7 42 39-85 13-55 (438)
465 PRK04176 ribulose-1,5-biphosph 83.4 2.4 5.3E-05 41.9 6.0 34 44-83 26-59 (257)
466 PRK07109 short chain dehydroge 83.4 2.4 5.1E-05 43.4 6.1 39 42-86 7-46 (334)
467 KOG1298 Squalene monooxygenase 83.3 1.5 3.2E-05 46.0 4.5 40 45-90 47-86 (509)
468 PF13738 Pyr_redox_3: Pyridine 83.3 1.6 3.4E-05 40.5 4.3 32 47-84 1-33 (203)
469 PRK08255 salicylyl-CoA 5-hydro 83.3 1.6 3.5E-05 49.9 5.2 36 44-83 1-36 (765)
470 COG2907 Predicted NAD/FAD-bind 83.3 1.2 2.6E-05 46.1 3.7 34 42-82 7-40 (447)
471 PRK06567 putative bifunctional 83.2 1.6 3.4E-05 51.1 5.0 34 42-81 382-415 (1028)
472 TIGR03693 ocin_ThiF_like putat 83.1 8.3 0.00018 42.9 10.2 34 44-82 130-163 (637)
473 PRK08177 short chain dehydroge 83.1 2.2 4.7E-05 40.4 5.3 36 44-85 2-38 (225)
474 KOG2614 Kynurenine 3-monooxyge 83.0 1.7 3.6E-05 45.9 4.7 35 43-83 2-36 (420)
475 TIGR01984 UbiH 2-polyprenyl-6- 83.0 1.4 3E-05 45.3 4.2 34 45-83 1-34 (382)
476 PRK06124 gluconate 5-dehydroge 83.0 2.6 5.7E-05 40.5 5.9 39 42-86 10-49 (256)
477 PRK07231 fabG 3-ketoacyl-(acyl 82.9 2 4.4E-05 40.9 5.1 36 44-85 6-42 (251)
478 PRK10675 UDP-galactose-4-epime 82.8 1.8 3.8E-05 43.7 4.8 33 44-82 1-34 (338)
479 PLN03129 NADP-dependent malic 82.8 5.1 0.00011 44.2 8.5 46 152-201 391-440 (581)
480 PRK06834 hypothetical protein; 82.8 1.5 3.3E-05 47.4 4.6 34 44-83 4-37 (488)
481 COG0476 ThiF Dinucleotide-util 82.8 5.9 0.00013 38.9 8.4 38 44-86 31-68 (254)
482 PRK08309 short chain dehydroge 82.7 2.1 4.6E-05 40.0 4.9 37 44-86 1-37 (177)
483 PRK07233 hypothetical protein; 82.7 1.5 3.3E-05 45.7 4.4 32 45-82 1-32 (434)
484 PRK07190 hypothetical protein; 82.6 1.6 3.4E-05 47.3 4.6 34 44-83 6-39 (487)
485 PRK07333 2-octaprenyl-6-methox 82.6 1.6 3.5E-05 45.2 4.5 36 44-83 2-37 (403)
486 PF01262 AlaDh_PNT_C: Alanine 82.5 2.7 5.9E-05 38.6 5.5 39 42-86 19-57 (168)
487 PRK06057 short chain dehydroge 82.5 2.5 5.3E-05 40.8 5.5 36 44-85 8-44 (255)
488 PRK14191 bifunctional 5,10-met 82.5 2.9 6.2E-05 42.3 6.1 30 43-78 157-187 (285)
489 COG1179 Dinucleotide-utilizing 82.5 1.3 2.8E-05 43.6 3.5 57 25-86 9-68 (263)
490 PRK14106 murD UDP-N-acetylmura 82.5 1.8 3.8E-05 46.0 4.9 34 43-82 5-38 (450)
491 PF07992 Pyr_redox_2: Pyridine 82.5 2.1 4.6E-05 39.4 4.9 32 45-82 1-32 (201)
492 PF02353 CMAS: Mycolic acid cy 82.5 15 0.00033 36.7 11.3 67 15-88 33-101 (273)
493 PTZ00383 malate:quinone oxidor 82.5 2 4.4E-05 46.7 5.4 36 43-82 45-80 (497)
494 PRK07024 short chain dehydroge 82.5 2.4 5.2E-05 41.0 5.4 37 43-85 2-39 (257)
495 PRK05866 short chain dehydroge 82.5 2.5 5.5E-05 42.2 5.8 37 44-86 41-78 (293)
496 TIGR01317 GOGAT_sm_gam glutama 82.5 1.7 3.7E-05 47.0 4.8 33 44-82 144-176 (485)
497 PRK06912 acoL dihydrolipoamide 82.4 1.7 3.7E-05 46.4 4.7 33 44-82 1-33 (458)
498 PLN02695 GDP-D-mannose-3',5'-e 82.4 2 4.3E-05 44.6 5.1 34 43-82 21-55 (370)
499 TIGR03466 HpnA hopanoid-associ 82.3 1.7 3.7E-05 43.3 4.4 34 44-83 1-35 (328)
500 PRK07208 hypothetical protein; 82.2 1.7 3.7E-05 46.3 4.7 35 42-82 3-37 (479)
No 1
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.7e-73 Score=566.39 Aligned_cols=325 Identities=27% Similarity=0.413 Sum_probs=296.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+|||++|..|+++ | |+|++|+|+++.+++|+ ..+ +|++|||++.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n-g-----~~V~lw~r~~~~~~~i~---------~~~-------~N~~yLp~i~---- 54 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN-G-----HEVRLWGRDEEIVAEIN---------ETR-------ENPKYLPGIL---- 54 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc-C-----CeeEEEecCHHHHHHHH---------hcC-------cCccccCCcc----
Confidence 48999999999999999999999 7 99999999998777633 322 5889998762
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+| .++.+++|+.++++++|+|+++||+++++++++++++++.+ ++++|+++||+++
T Consensus 55 ---lp------------------~~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~---~~~iv~~sKGie~ 110 (329)
T COG0240 55 ---LP------------------PNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLK---DAIIVSATKGLEP 110 (329)
T ss_pred ---CC------------------cccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccC---CCeEEEEeccccC
Confidence 32 26889999999999999999999999999999999988876 7899999999999
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
+ +.+++|+++++.+|. .+++++||||||.|++++.|+.++++ .+.+.+++++++|++.+|++|+++|++|+|
T Consensus 111 ~-----t~~l~seii~e~l~~--~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gve 183 (329)
T COG0240 111 E-----TGRLLSEIIEEELPD--NPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVE 183 (329)
T ss_pred C-----CcchHHHHHHHHcCC--CeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence 7 689999999999984 35899999999999999999988765 567888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHHHh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELA 358 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~ 358 (465)
++||+|||+|||+||++|+++| +|++|+++++|++||.+|+.++|++|+||+|+ |+|||++||+ +||||+||..|+
T Consensus 184 igGAlKNViAIA~Gi~dGlg~G-~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg 262 (329)
T COG0240 184 IGGALKNVIAIAAGIADGLGLG-DNAKAALITRGLAEMTRLGVALGAKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLG 262 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-hhHHHHHHHhHHHHHHHHHHHhCCCcchhcccccccceeEecCCCccccHHHHHHHh
Confidence 9999999999999999999998 79999999999999999999999999999998 9999999997 699999999999
Q ss_pred cCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhcc
Q 012349 359 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 438 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~~~ 438 (465)
+|.++++++..+ ++++||+.|+++++++++++|+ + |||+++||+||+++.+|.+++..||.++
T Consensus 263 ~g~~~~e~l~~~--g~vvEGv~t~k~v~~la~~~~i--------------~-mPI~~~Vy~vl~~~~~~~~~~~~L~~r~ 325 (329)
T COG0240 263 QGLSLDEALEEI--GQVVEGVRTAKAVYELAKKLGI--------------E-MPITEAVYRVLYEGLDPKEAIEELMGRD 325 (329)
T ss_pred CCCCHHHHHHhc--CCeeecHHHHHHHHHHHHHcCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhccc
Confidence 999887666443 5789999999999999999994 7 8999999999999999999999999999
Q ss_pred cCCC
Q 012349 439 TMND 442 (465)
Q Consensus 439 ~~~~ 442 (465)
.|.|
T Consensus 326 ~k~E 329 (329)
T COG0240 326 LKPE 329 (329)
T ss_pred cCCC
Confidence 8876
No 2
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7e-69 Score=550.84 Aligned_cols=349 Identities=26% Similarity=0.375 Sum_probs=302.4
Q ss_pred hhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCC--CCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhc
Q 012349 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRR 110 (465)
Q Consensus 33 ~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~--~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n 110 (465)
|.||++.+.+.|||+|||+|+||+|+|..|+++ |.-. -+|+|.+|.|+++. +.+++.+.|++++ +|
T Consensus 1 ~~~~~~~~~~~~ki~ViGaG~wGtAlA~~l~~n-~~~~~~~~~~V~lw~~~~~~----~~~~~~~~in~~~-------~N 68 (365)
T PTZ00345 1 RSLFQKLRCGPLKVSVIGSGNWGSAISKVVGEN-TQRNYIFHNEVRMWVLEEIV----EGEKLSDIINTKH-------EN 68 (365)
T ss_pred CcchhhcccCCCeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEecccc----cchHHHHHHHhcC-------CC
Confidence 567888899999999999999999999999998 5100 01699999999852 1223445566655 58
Q ss_pred ccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH--hhhccC
Q 012349 111 CAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR--YWKERI 188 (465)
Q Consensus 111 ~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~--~l~~~~ 188 (465)
++|+|+++ || .++.+++|++++++++|+||++||++.++++++++++ ++++
T Consensus 69 ~~ylp~~~-------Lp------------------~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~-- 121 (365)
T PTZ00345 69 VKYLPGIK-------LP------------------DNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKK-- 121 (365)
T ss_pred cccCCCCc-------CC------------------CceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCC--
Confidence 89998762 32 2688999999999999999999999999999999998 7765
Q ss_pred CCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCC
Q 012349 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRP 267 (465)
Q Consensus 189 ~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~ 267 (465)
++++||++||++.++. +..++|+++++.++. ++++++|||||.|++++.|+.++++ .+.+.++.++++|+++
T Consensus 122 -~~~iIS~aKGIe~~t~---~~~~~sevi~e~l~~---~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~ 194 (365)
T PTZ00345 122 -HARAISLTKGIIVENG---KPVLCSDVIEEELGI---PCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRP 194 (365)
T ss_pred -CCEEEEEeCCcccCCC---CcccHHHHHHHHhCC---CeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 5689999999998731 237899999999963 5789999999999999999988764 5778889999999999
Q ss_pred CCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCC--CcchhccC-chhhhhhc
Q 012349 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAE--EPEKLAGP-LLADTYVT 344 (465)
Q Consensus 268 g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~--~~~t~~g~-glgDl~~T 344 (465)
+|++|.++|++|+|+||++||||||++||++|+++| +|++|++|++|++||.+|++++|+ +++||+|+ |+|||++|
T Consensus 195 ~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G-~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~T 273 (365)
T PTZ00345 195 YFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLG-TNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITT 273 (365)
T ss_pred cEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhc
Confidence 999999999999999999999999999999999997 799999999999999999999975 89999996 99999999
Q ss_pred ccCchhHHHHHHHhcC---CChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHH
Q 012349 345 LLKGRNAWYGQELAKG---RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 421 (465)
Q Consensus 345 ~~~sRN~~~G~~l~~g---~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il 421 (465)
|+.||||+||++|++| ++++++++++.+++++||+.|++++++++++++++ .+ +||+++||+||
T Consensus 274 c~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~------------~~-~Pi~~~vy~il 340 (365)
T PTZ00345 274 CLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK------------KE-FPLFTVTYKIA 340 (365)
T ss_pred ccCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC------------CC-CCHHHHHHHHH
Confidence 9999999999999986 47777776654467999999999999999999952 25 89999999999
Q ss_pred hcCCCHHHHHHHHHhcccCC
Q 012349 422 IMRESPIQAILEALRDETMN 441 (465)
Q Consensus 422 ~~~~~~~~~~~~ll~~~~~~ 441 (465)
|++.+|.+++..||.++.+.
T Consensus 341 ~~~~~~~~~~~~l~~r~~~~ 360 (365)
T PTZ00345 341 FEGADPSSLIDVLSTNELRP 360 (365)
T ss_pred hCCCCHHHHHHHHHcCCCcc
Confidence 99999999999999877664
No 3
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=100.00 E-value=2.6e-65 Score=521.01 Aligned_cols=329 Identities=25% Similarity=0.347 Sum_probs=285.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCC---CeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRD---KVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~---~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
||+|||+|+||+++|..|+++ |...+ .|+|++|.|+++. ..+.+.+.+++.+ +|++|+|++
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~~~~~----~~~~~~~~in~~~-------~n~~ylpgi---- 64 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVFEEEI----EGRNLTEIINTTH-------ENVKYLPGI---- 64 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEecccc----CCHHHHHHHHhcC-------CCccccCCC----
Confidence 699999999999999999988 52111 1799999995421 1123445566654 588888875
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
++| .++++++|+++++++||+||++||+++++++++++++++++ ++++||++||++
T Consensus 65 ---~Lp------------------~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~---~~~iVs~tKGie 120 (342)
T TIGR03376 65 ---KLP------------------ANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKP---NARAISCIKGLE 120 (342)
T ss_pred ---cCC------------------CCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCC---CCEEEEEeCCcc
Confidence 222 26889999999999999999999999999999999999876 678999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CC----hhHHHHHHHHHcCCCCeEEecCC
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GA----EKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~----~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
.+. ++.+++|+++++.++ .++++++|||||.|++++.|+.++++ .+ .+.++.++++|++++|++|.++|
T Consensus 121 ~~~---~~~~~~se~i~e~l~---~~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 121 VSK---DGVKLLSDIIEEELG---IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred cCC---CcCccHHHHHHHHhC---CCeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence 762 257899999999885 35789999999999999999988764 45 67899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcc--hhccC-chhhhhhcccCchhHHH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPE--KLAGP-LLADTYVTLLKGRNAWY 353 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~--t~~g~-glgDl~~T~~~sRN~~~ 353 (465)
++|+|+||++||||||++||++|+++| +|++|++|+++++||.++++++|++++ ||+|+ |+|||++||+.||||+|
T Consensus 195 v~GvEl~galKNv~AIa~Gi~~Gl~~g-~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~ 273 (342)
T TIGR03376 195 VAGVEIAGALKNVVAIAAGFVDGLGWG-DNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKV 273 (342)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhhhhheeecCccHHH
Confidence 999999999999999999999999997 789999999999999999999999887 99996 99999999988999999
Q ss_pred HHHHhc-CCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHH
Q 012349 354 GQELAK-GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAIL 432 (465)
Q Consensus 354 G~~l~~-g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~ 432 (465)
|++|++ |++++++.+++..++++||+.|++++++++++++++ .+ +||++++|+||+++.+|.+++.
T Consensus 274 G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~------------~~-~Pi~~~vy~il~~~~~~~~~~~ 340 (342)
T TIGR03376 274 GRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKD------------DE-FPLFEAVYQILYEGLPPKKLPE 340 (342)
T ss_pred HHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCC------------cC-CCHHHHHHHHHhCCCCHHHHHh
Confidence 999999 999988877644567999999999999999999973 23 7999999999999999999875
Q ss_pred H
Q 012349 433 E 433 (465)
Q Consensus 433 ~ 433 (465)
.
T Consensus 341 ~ 341 (342)
T TIGR03376 341 C 341 (342)
T ss_pred h
Confidence 4
No 4
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=100.00 E-value=6.2e-64 Score=494.56 Aligned_cols=363 Identities=34% Similarity=0.448 Sum_probs=317.5
Q ss_pred hHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCC-CCeeEEEEecCchhhhhhhhhhhHHHHhchhhh
Q 012349 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR-DKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~-~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~ 103 (465)
.++++++.++.+++.+..+.||+|||+|+||+++|+.++++++.+. -..+|.+|.+.++.-.+ .++|.++||++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~--~~~L~eiIN~~h-- 78 (372)
T KOG2711|consen 3 DEIKLDESIRNLGKAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE--AEKLTEIINSRH-- 78 (372)
T ss_pred cccccchhhhccCchhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh--hHHHHHHhcccc--
Confidence 4678899999999998889999999999999999999998753221 11479999998864432 479999999998
Q ss_pred HHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh
Q 012349 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (465)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~ 183 (465)
+|++|+|++ ++| .++.+++|+.+++++||++|+++|+|++.++|++|+.+
T Consensus 79 -----eN~KYlpg~-------~lP------------------~NvvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~ 128 (372)
T KOG2711|consen 79 -----ENVKYLPGI-------KLP------------------ENVVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGY 128 (372)
T ss_pred -----ccccccCCc-------cCC------------------CCeEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcc
Confidence 599999986 233 26889999999999999999999999999999999999
Q ss_pred hhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHH--HHHH
Q 012349 184 WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--KPLA 261 (465)
Q Consensus 184 l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~--~~l~ 261 (465)
+++ +...||++||++...+ .++..++|++|.+.+|.+ +.+++|||+|.|+++++++..+++..+++. ..++
T Consensus 129 vk~---~~~aISL~KG~e~~~~-g~~i~liS~iI~~~lgI~---~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~ 201 (372)
T KOG2711|consen 129 VKP---GATAISLIKGVEVGEE-GPGIRLISQIIHRALGIP---CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLK 201 (372)
T ss_pred cCC---CCeEEEeecceeccCC-CCceeehHHHHHHHhCCC---ceeecCCchHHHHHhccccceeEeccchhhcchHHH
Confidence 998 7889999999987532 225789999999999965 469999999999999999999987754433 3499
Q ss_pred HHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHh-CC-Ccchhcc-Cch
Q 012349 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLL-AE-EPEKLAG-PLL 338 (465)
Q Consensus 262 ~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~-G~-~~~t~~g-~gl 338 (465)
++|++++|+++..+|+.++|+||+||||+|+|+||++||++| +|+++++++.++.||..|++.+ .. .++|+.+ +|+
T Consensus 202 ~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g-~NTkaAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGv 280 (372)
T KOG2711|consen 202 KLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLG-NNTKAAIIRLGLLEMIKFATHFYPGSKPTTFFESCGV 280 (372)
T ss_pred HHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCC-cchHHHHHHhhHHHHHHHHHHhCCCCCcceeeccccH
Confidence 999999999999999999999999999999999999999998 6888999999999999998764 55 6778888 499
Q ss_pred hhhhhcccCchhHHHHHHHhcC-CChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHH
Q 012349 339 ADTYVTLLKGRNAWYGQELAKG-RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKML 417 (465)
Q Consensus 339 gDl~~T~~~sRN~~~G~~l~~g-~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~v 417 (465)
|||++||+.+|||+++++++++ ++.++.++++-++|.+||+.|+++||+++++.++ ++++|++++|
T Consensus 281 aDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~~~l-------------~~kfPlftaV 347 (372)
T KOG2711|consen 281 ADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQKKGL-------------VEKFPLFTAV 347 (372)
T ss_pred HHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHHcCh-------------hhhCcHHHHH
Confidence 9999999999999999999987 7777788888778899999999999999999997 5669999999
Q ss_pred HHHHhcCCCHHHHHHHHHhcccCCCc
Q 012349 418 YKILIMRESPIQAILEALRDETMNDP 443 (465)
Q Consensus 418 y~il~~~~~~~~~~~~ll~~~~~~~~ 443 (465)
|+|+|++. |.+++.++|++++..+|
T Consensus 348 ykI~~~~~-~~~~lle~l~~~~~~~~ 372 (372)
T KOG2711|consen 348 YKICYERL-PPQALLECLRNHPEDDP 372 (372)
T ss_pred HHHHhcCC-CHHHHHHHHhcccccCC
Confidence 99999987 89999999998887654
No 5
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-60 Score=486.46 Aligned_cols=326 Identities=25% Similarity=0.384 Sum_probs=287.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccc-hhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK-YVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~-~~~~~ 120 (465)
.+|||+|||+|+||+++|..|+++ | +|++|.|++++++.++. .+ .|..|++ +.
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~-g------~v~l~~~~~~~~~~i~~---------~~-------~~~~~l~~~~--- 59 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARR-G------PTLQWVRSAETADDIND---------NH-------RNSRYLGNDV--- 59 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C------CEEEEeCCHHHHHHHHh---------cC-------CCcccCCCCc---
Confidence 458999999999999999999988 5 58899999887766433 22 2444554 21
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+| .++.+++|++++++++|+||++||+++++++++++++++++ ++++|+++||+
T Consensus 60 ----~l~------------------~~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~---~~~vIsl~kGi 114 (341)
T PRK12439 60 ----VLS------------------DTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRP---WVPVVSLVKGL 114 (341)
T ss_pred ----ccC------------------CCeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEEEeCC
Confidence 111 15778899988899999999999999999999999999876 67899999999
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
+.+ +.+++++++++.++. .++++++|||++.|++.|.++.++++ .+++.++.++++|++++|+++.++|++|
T Consensus 115 ~~~-----t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~g 187 (341)
T PRK12439 115 EQG-----TNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVG 187 (341)
T ss_pred cCC-----CCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHH
Confidence 987 578999999998863 35788999999999999998877654 4667789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHH
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQE 356 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~ 356 (465)
+||+|++||++|+++|+++|+++| +|++|++++++++||.++++++|++++||+|+ |+|||++||+ .||||+||++
T Consensus 188 ve~~~alkNv~aia~G~~~g~~~g-~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~ 266 (341)
T PRK12439 188 VEMAGALKNVFAIAVGMGYSLGIG-ENTRAMVIARALREMTKLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQ 266 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHhCCCcccccccchhhhhhhhccCCCCccHHHHHH
Confidence 999999999999999999999997 68899999999999999999999999999996 9999999996 5999999999
Q ss_pred HhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHh
Q 012349 357 LAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALR 436 (465)
Q Consensus 357 l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~ 436 (465)
|++|++++++.+++ ++++||+.|++.++++++++++ + +||++++|+|||++.+|.+++..||.
T Consensus 267 l~~g~~~~~~~~~~--~~~~EG~~~~~~~~~~~~~~~~--------------~-~Pi~~~~~~il~~~~~~~~~~~~l~~ 329 (341)
T PRK12439 267 LGAGKPIDEIIASM--NQVAEGVKAASVVMEFADEYGL--------------N-MPIAREVDAVINHGSTVEQAYRGLIA 329 (341)
T ss_pred HHCCCCHHHHHHhc--CCEEehHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhc
Confidence 99999988877544 4689999999999999999995 6 89999999999999999999999999
Q ss_pred cccCCCc
Q 012349 437 DETMNDP 443 (465)
Q Consensus 437 ~~~~~~~ 443 (465)
++.+.|.
T Consensus 330 ~~~~~e~ 336 (341)
T PRK12439 330 EVPGHEV 336 (341)
T ss_pred CCCCccc
Confidence 9999873
No 6
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.8e-51 Score=413.41 Aligned_cols=318 Identities=22% Similarity=0.356 Sum_probs=272.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++ +.+ +|..|+++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~-g-----~~V~l~~r~~~~~~~i~---------~~~-------~~~~~~~~~------ 52 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK-K-----ISVNLWGRNHTTFESIN---------TKR-------KNLKYLPTC------ 52 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCHHHHHHHH---------HcC-------CCcccCCCC------
Confidence 6899999999999999999999 7 99999999987766533 221 234455432
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHHHH-hhhccCCCCEEEEeecccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGVE 201 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l~~-~l~~~~~~~ivIs~~kGi~ 201 (465)
.+| .++.+++|+.+++ .++|+||++||+++++++++++++ ++.+ ++.+++++||++
T Consensus 53 -~~~------------------~~i~~~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~---~~~vv~~~nGi~ 110 (326)
T PRK14620 53 -HLP------------------DNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKK---NTPILICSKGIE 110 (326)
T ss_pred -cCC------------------CCeEEeCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCC---CCEEEEEEcCee
Confidence 111 1577888888876 589999999999999999999998 8776 678999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEecCChHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (465)
.. +..++++.+.+.++. .++.+++||+++.+++.+.++.+.++ .+.+..+.++++|++.+|+++.++|++|+
T Consensus 111 ~~-----~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~ 183 (326)
T PRK14620 111 KS-----SLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGV 183 (326)
T ss_pred CC-----CCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhh
Confidence 76 467788999988863 46778999999999998777655554 45567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCC--CcchhccC-chhhhhhccc--CchhHHHHH
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAE--EPEKLAGP-LLADTYVTLL--KGRNAWYGQ 355 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~--~~~t~~g~-glgDl~~T~~--~sRN~~~G~ 355 (465)
+|+|++||++++++|+++|+.+++ |.++++++++++||..+++++|+ +++|+.|+ |+||+++||+ .||||+||+
T Consensus 184 ~~~k~~~N~ia~~~g~~~g~~~~~-n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~ 262 (326)
T PRK14620 184 QIGAALKNIIAIACGIVLGKNLGN-NAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGF 262 (326)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHH
Confidence 999999999999999999999874 56789999999999999999998 78999997 8999999996 899999999
Q ss_pred HHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 012349 356 ELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEAL 435 (465)
Q Consensus 356 ~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll 435 (465)
+|++|...+|+.+. .+.++||+.+++.++++++++|+ + +|++++||++++++.+|.+++..+|
T Consensus 263 ~l~~g~~~~d~~~~--~~~~vegi~~~~~v~~~a~~~~i--------------~-~P~~~~l~~~~~~~~~~~~~~~~~~ 325 (326)
T PRK14620 263 KIGNGFNINQILSE--GKSVIEGFSTVKPLISLAKKLNI--------------E-LPICESIYNLLYENISLEKTISVIL 325 (326)
T ss_pred HHHCCCCHHHHHHh--CCCEeecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 99999888776532 23469999999999999999994 6 8999999999999999999999887
Q ss_pred h
Q 012349 436 R 436 (465)
Q Consensus 436 ~ 436 (465)
+
T Consensus 326 ~ 326 (326)
T PRK14620 326 S 326 (326)
T ss_pred C
Confidence 4
No 7
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-44 Score=364.54 Aligned_cols=299 Identities=25% Similarity=0.409 Sum_probs=264.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.|||+|||+|+||+++|..|+++ | |+|++|+|++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-G-----~~V~~~~r~~~--------------------------------------- 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-G-----HRVRVWSRRSG--------------------------------------- 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-C-----CEEEEEeCCCC---------------------------------------
Confidence 47999999999999999999999 7 99999998742
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh-hhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~-l~~~~~~~ivIs~~kGi~ 201 (465)
.+++++++++|+||+++|+++++++++++.++ +++ ++++|+++||++
T Consensus 39 -----------------------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~---~~ivi~~s~gi~ 86 (308)
T PRK14619 39 -----------------------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPP---ETIIVTATKGLD 86 (308)
T ss_pred -----------------------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCC---CcEEEEeCCccc
Confidence 12335567899999999999999999999875 554 678999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHcCCCCeEEecCChHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (465)
+. +...+++.+.+.++. .++.+++||+++.++..+.++..++ +.+.+..+.++++|++.++++++++|++|+
T Consensus 87 ~~-----~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G~ 159 (308)
T PRK14619 87 PE-----TTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLGT 159 (308)
T ss_pred CC-----CCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchhh
Confidence 86 467888888877653 4677889999999999887765554 557788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHHH
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQEL 357 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l 357 (465)
+|++++||++||++|+.++++++ +|.+++++.+++.|+..+++++|.+++++.++ |+||+++||+ .|||+++|..+
T Consensus 160 ~~~~alkNv~ai~~G~~~~~~l~-~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~~~g~~l 238 (308)
T PRK14619 160 ELGGTLKNVIAIAAGVCDGLQLG-TNAKAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGL 238 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccHHHHHHH
Confidence 99999999999999999999886 68888999999999999999999999999886 9999999996 69999999999
Q ss_pred hcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012349 358 AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 437 (465)
Q Consensus 358 ~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~~ 437 (465)
++|++.+++.+++ .+++||+.+++.++++++++|+ + +|+++++|++++++.+|.+.+..+|.+
T Consensus 239 ~~g~~~~~~~~~~--~~~~eG~~~~~~~~~~~~~~~~--------------~-~Pl~~~v~~i~~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 239 AQGKSLEQILAEL--EGTAEGVNTANVLVQLAQQQNI--------------A-VPITEQVYRLLQGEITPQQALEELMER 301 (308)
T ss_pred HCCCCHHHHHHhc--CCEeecHHHHHHHHHHHHHcCC--------------C-CCHHHHHHHHHcCCCCHHHHHHHHHcC
Confidence 9999988877654 3589999999999999999994 6 899999999999999999999999999
Q ss_pred ccCCCc
Q 012349 438 ETMNDP 443 (465)
Q Consensus 438 ~~~~~~ 443 (465)
..+.||
T Consensus 302 ~~~~~~ 307 (308)
T PRK14619 302 DLKPEF 307 (308)
T ss_pred CCcccc
Confidence 888775
No 8
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-44 Score=365.67 Aligned_cols=321 Identities=25% Similarity=0.351 Sum_probs=265.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++. .+ .|..++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~-G-----~~V~~~~r~~~~~~~i~~---------~~-------~~~~~~~g~----- 56 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK-G-----VPVRLWARRPEFAAALAA---------ER-------ENREYLPGV----- 56 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH---------hC-------cccccCCCC-----
Confidence 58999999999999999999998 7 999999999876655322 11 233344331
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++ .++..+++++++++++|+||++||+++++++++.++ + +.++|+++||+.+
T Consensus 57 --~~~------------------~~~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~----~---~~~vi~~~~Gi~~ 109 (328)
T PRK14618 57 --ALP------------------AELYPTADPEEALAGADFAVVAVPSKALRETLAGLP----R---ALGYVSCAKGLAP 109 (328)
T ss_pred --cCC------------------CCeEEeCCHHHHHcCCCEEEEECchHHHHHHHHhcC----c---CCEEEEEeecccc
Confidence 111 135677888888899999999999999888886553 3 5689999999986
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
.+. ....+++.+.+... ..+.++.||+++.+++.+.++..+. +.+++..+.++++|++.+++++.++|++|++
T Consensus 110 ~~~---~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~ 183 (328)
T PRK14618 110 DGG---RLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVE 183 (328)
T ss_pred CCC---ccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchh
Confidence 521 23456666654221 2357899999999999988765544 5677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHHHh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELA 358 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~ 358 (465)
|++++||++|+++|+..+++++ +|..++++.++++|+..+++++|.++++++++ |+|||++||. .+||+++|+.++
T Consensus 184 ~~~~lkN~~ai~~G~~~~~k~~-~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~ 262 (328)
T PRK14618 184 LGGALKNVIALAAGMVDGLKLG-DNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIV 262 (328)
T ss_pred hhHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHh
Confidence 9999999999999999999997 67888999999999999999999999999985 9999999984 899999999999
Q ss_pred cCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhcc
Q 012349 359 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 438 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~~~ 438 (465)
+|++.++.. .+..+.||+.+++.++++++++++ + +|+++++|++|+++.+|.+++..+|.++
T Consensus 263 ~g~~~~~~~---~~~~~~~g~kd~~~~~~la~~~~~--------------~-~Pl~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (328)
T PRK14618 263 RGVDREHLE---AGGKVVEGLYTVKALDAWAKAHGH--------------D-LPIVEAVARVARGGWDPLAGLRSLMGRE 324 (328)
T ss_pred CCCCHHHHH---HcCCEEecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhcCC
Confidence 997765443 234578999999999999999994 6 8999999999999999999999999888
Q ss_pred cCCC
Q 012349 439 TMND 442 (465)
Q Consensus 439 ~~~~ 442 (465)
.+.|
T Consensus 325 ~~~~ 328 (328)
T PRK14618 325 AKEE 328 (328)
T ss_pred CCCC
Confidence 7754
No 9
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=8.7e-40 Score=330.28 Aligned_cols=321 Identities=25% Similarity=0.402 Sum_probs=269.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.++ .+..++++.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~----- 53 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN-G-----HDVTLWARDPEQAAEINADR----------------ENPRYLPGI----- 53 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcC----------------cccccCCCC-----
Confidence 47999999999999999999998 7 89999999987666532211 011222211
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++ .++.++++++++++++|+||+|||+++++++++++.+++.+ ++++|+++||+.+
T Consensus 54 --~~~------------------~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~---~~~vi~~~ngv~~ 110 (325)
T PRK00094 54 --KLP------------------DNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPP---DAPIVWATKGIEP 110 (325)
T ss_pred --cCC------------------CCeEEeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCC---CCEEEEEeecccC
Confidence 110 13566788888889999999999999999999999998876 6899999999988
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
+ +...+++.+++.++.. ...+++.||+++.+...+.++.+.. +.+++..+.++++|+..+++++.++|+.|.+
T Consensus 111 ~-----~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~ 184 (325)
T PRK00094 111 G-----TGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVE 184 (325)
T ss_pred C-----CCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhh
Confidence 6 4567888888877631 2467899999999988887665554 4567788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHHHh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELA 358 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~ 358 (465)
|++++||++++++|+..+++++ +|...+++..+++|+..+++++|.+++++.+. +.||+++||. .+||+.+|..++
T Consensus 185 ~~k~~~N~~~~~~g~~~~~k~~-~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~ 263 (325)
T PRK00094 185 LGGALKNVIAIAAGIADGLGLG-DNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALG 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHH
Confidence 9999999999999999999986 57777999999999999999999999999884 8999999995 599999999999
Q ss_pred cCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012349 359 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 437 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~~ 437 (465)
+|.+..++.+.+ +.+.||...++.++++++++|+ + +|+++++|++++++++|.+.+..|+.+
T Consensus 264 ~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~~~--------------~-~P~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
T PRK00094 264 QGKSLEEALAEI--GMVAEGVRTAKAVYELAKKLGV--------------E-MPITEAVYAVLYEGKDPREAVEDLMGR 325 (325)
T ss_pred CCCCHHHHHHHc--CCEeecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHcCCCCHHHHHHHHhcC
Confidence 998765554333 2689999999999999999994 6 899999999999999999999998863
No 10
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=100.00 E-value=1.7e-34 Score=261.83 Aligned_cols=144 Identities=33% Similarity=0.519 Sum_probs=128.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcc-hhccC-chhhhhhccc--Cchh
Q 012349 275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPE-KLAGP-LLADTYVTLL--KGRN 350 (465)
Q Consensus 275 ~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~-t~~g~-glgDl~~T~~--~sRN 350 (465)
+|++|+|||+++||+|||++||++|+++| +|++|++|+++++||.++++++|++++ |++++ |+|||++||+ .|||
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g-~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN 79 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLG-DNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRN 79 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCC-CChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCc
Confidence 69999999999999999999999999997 899999999999999999999999999 99996 9999999997 5999
Q ss_pred HHHHHHHhcC-CChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHH
Q 012349 351 AWYGQELAKG-RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQ 429 (465)
Q Consensus 351 ~~~G~~l~~g-~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~ 429 (465)
|+||+++++| .+.+++.+++.+++++||+.|++.++++++++++ + +|+++++|+||+++.+|.+
T Consensus 80 ~~~G~~l~~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i--------------~-~Pl~~~vy~Il~~~~~~~~ 144 (149)
T PF07479_consen 80 RRFGKALGKGGKSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNI--------------E-FPLFTAVYKILYENESPEE 144 (149)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT---------------G-SHHHHHHHHHHHS---HHH
T ss_pred HHHHHHHHccCCCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCC--------------C-ChHHHHHHHHHcCcCCHHH
Confidence 9999999999 8888888777667899999999999999999994 6 8999999999999999999
Q ss_pred HHHHH
Q 012349 430 AILEA 434 (465)
Q Consensus 430 ~~~~l 434 (465)
++.+|
T Consensus 145 ~i~~l 149 (149)
T PF07479_consen 145 AIEEL 149 (149)
T ss_dssp HHHHH
T ss_pred HHHcC
Confidence 98765
No 11
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.94 E-value=9e-27 Score=213.27 Aligned_cols=152 Identities=32% Similarity=0.562 Sum_probs=122.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++ +++ .|+.|+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g-----~~V~l~~~~~~~~~~i~---------~~~-------~n~~~~~~~------- 51 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-G-----HEVTLWGRDEEQIEEIN---------ETR-------QNPKYLPGI------- 51 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-T-----EEEEEETSCHHHHHHHH---------HHT-------SETTTSTTS-------
T ss_pred CEEEECcCHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHHH---------HhC-------CCCCCCCCc-------
Confidence 799999999999999999999 7 99999999987776533 322 477787764
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccc
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAEL 204 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~ 204 (465)
.+| .++.+++|++++++++|+||++||+++++++++++++++++ ++++|+++||++..
T Consensus 52 ~l~------------------~~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~---~~~ii~~~KG~~~~- 109 (157)
T PF01210_consen 52 KLP------------------ENIKATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKK---GQIIISATKGFEPG- 109 (157)
T ss_dssp BEE------------------TTEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHT---T-EEEETS-SEETT-
T ss_pred ccC------------------cccccccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCC---CCEEEEecCCcccC-
Confidence 222 26889999999999999999999999999999999999987 78999999999765
Q ss_pred cccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCC
Q 012349 205 EAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGA 253 (465)
Q Consensus 205 ~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~ 253 (465)
+..++++++++.++.+ ++++++||+||.|++.++++.+++++.
T Consensus 110 ----~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~ 152 (157)
T PF01210_consen 110 ----TLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASK 152 (157)
T ss_dssp ----EEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEES
T ss_pred ----CCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEec
Confidence 5789999999999853 489999999999999999998877543
No 12
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.93 E-value=3.7e-24 Score=214.20 Aligned_cols=284 Identities=18% Similarity=0.175 Sum_probs=194.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.+++ .+.. +.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~g~-------------------~~~~-----~~ 50 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G-----HDVTLVARRGAHLDALNENGL-------------------RLED-----GE 50 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECChHHHHHHHHcCC-------------------cccC-----Cc
Confidence 6899999999999999999998 7 899999998766554322111 0100 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.. .++..+++.+++ .++|+||+|||+++++++++++.+++.+ ++.||+++||+...
T Consensus 51 ~~--------------------~~~~~~~~~~~~-~~~d~vila~k~~~~~~~~~~l~~~l~~---~~~iv~~~nG~~~~ 106 (304)
T PRK06522 51 IT--------------------VPVLAADDPAEL-GPQDLVILAVKAYQLPAALPSLAPLLGP---DTPVLFLQNGVGHL 106 (304)
T ss_pred ee--------------------ecccCCCChhHc-CCCCEEEEecccccHHHHHHHHhhhcCC---CCEEEEecCCCCcH
Confidence 00 012334566554 8999999999999999999999998876 67899999999765
Q ss_pred ccccccCCCHHHHHHhHhCCCC------ccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~------~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
+.+.+.++... ...+.+.+|+++.+.+.+...........+..+.++++|+..++.++.++|+
T Consensus 107 -----------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di 175 (304)
T PRK06522 107 -----------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNAAGLDVEWSPDI 175 (304)
T ss_pred -----------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHH
Confidence 45666554211 1123577899888777654332222222245788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCC---cchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhccc--CchhH-
Q 012349 278 VTHEVMGGLKNVYAIGAGMVAALTNES---ATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL--KGRNA- 351 (465)
Q Consensus 278 ~gve~~galKNviAia~Gi~~gl~~g~---~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~--~sRN~- 351 (465)
.+.+|.|.++|+...+.+++.+..+|. +.....++...+.|+..+++++|.+.... .+.+.+.... ...|+
T Consensus 176 ~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~---~~~~~~~~~~~~~~~~~s 252 (304)
T PRK06522 176 RTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE---EVREYVRQVIQKTAANTS 252 (304)
T ss_pred HHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH---HHHHHHHHHhhccCCCCc
Confidence 999999999998877777776665431 22234799999999999999999865321 0111111110 01111
Q ss_pred HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 352 WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 352 ~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
++-+++.+|+.+ .+|-+.. .++++++++|+ + +|.++++|+++..
T Consensus 253 Sm~~D~~~gr~t-----------Eid~i~G--~~v~~a~~~gv--------------~-~P~~~~l~~~~~~ 296 (304)
T PRK06522 253 SMLQDLEAGRPT-----------EIDAIVG--YVLRRGRKHGI--------------P-TPLNDALYGLLKA 296 (304)
T ss_pred hHHHHHHcCCCc-----------ccchhcc--HHHHHHHHcCC--------------C-CcHHHHHHHHHHH
Confidence 233333333322 2333333 69999999995 7 8999999999964
No 13
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.91 E-value=1.4e-22 Score=203.26 Aligned_cols=286 Identities=17% Similarity=0.177 Sum_probs=186.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|+| +++++.++.++ ..+.... ++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g-----~~V~~~~r-~~~~~~~~~~g-------------------~~~~~~~---~~ 51 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-G-----RDVTFLVR-PKRAKALRERG-------------------LVIRSDH---GD 51 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C-----CceEEEec-HHHHHHHHhCC-------------------eEEEeCC---Ce
Confidence 7999999999999999999998 7 99999999 65555432211 0111100 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
..+ +...+++.+++..++|+||+|||+++++++++++.+++.+ +++|++++||+...
T Consensus 52 ~~~--------------------~~~~~~~~~~~~~~~d~vilavk~~~~~~~~~~l~~~~~~---~~~ii~~~nG~~~~ 108 (305)
T PRK12921 52 AVV--------------------PGPVITDPEELTGPFDLVILAVKAYQLDAAIPDLKPLVGE---DTVIIPLQNGIGQL 108 (305)
T ss_pred EEe--------------------cceeecCHHHccCCCCEEEEEecccCHHHHHHHHHhhcCC---CCEEEEeeCCCChH
Confidence 000 1234566666668899999999999999999999998876 68899999999765
Q ss_pred ccccccCCCHHHHHHhHhCCCC-cc-----EEEEeCCchhhhhhccCceEEEEeC-ChhHHHHHHHHHcCCCCeEEecCC
Q 012349 204 LEAVPRIITPTQMINRATGVPI-EN-----ILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~-~~-----i~vlsGP~~a~ev~~g~~t~~~~~~-~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.+.+.++... .. .+.+.+|+.......+...+..... ..+..+.+.++|+..++.++.++|
T Consensus 109 -----------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 109 -----------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred -----------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHH
Confidence 45666665321 00 1223345544433222211111111 235677899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCC---CcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhc-cc-CchhH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVT-LL-KGRNA 351 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g---~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T-~~-~sRN~ 351 (465)
+...+|.+.+.|....+.+++.+..+| .+.....++...++|+..++++.|.+..... +-+.+.. +. ...|+
T Consensus 178 i~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~---~~~~~~~~~~~~~~~~ 254 (305)
T PRK12921 178 IRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDV---VEEIVKIFAGAPGDMK 254 (305)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHhccCCCCC
Confidence 999999999999766665665544432 1223347899999999999999998653221 1111100 00 01111
Q ss_pred -HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 352 -WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 352 -~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
++-+++.+|+.+ .+|-+.. .++++++++|+ + +|.++++|.++..
T Consensus 255 sSm~~D~~~gr~t-----------Eid~i~G--~vv~~a~~~gv--------------~-~P~~~~l~~~~~~ 299 (305)
T PRK12921 255 TSMLRDMEKGRPL-----------EIDHLQG--VLLRRARAHGI--------------P-TPILDTVYALLKA 299 (305)
T ss_pred cHHHHHHHcCCcc-----------cHHHHHH--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 233344443322 2343333 69999999995 6 8999999999974
No 14
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.90 E-value=4.8e-22 Score=201.19 Aligned_cols=286 Identities=16% Similarity=0.141 Sum_probs=190.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|+||+.+|..|+++ | ++|++|+|++. +.++.++ ..+....
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-g-----~~V~~~~r~~~--~~~~~~g-------------------~~~~~~~--- 53 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-G-----FDVHFLLRSDY--EAVRENG-------------------LQVDSVH--- 53 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCH--HHHHhCC-------------------eEEEeCC---
Confidence 348999999999999999999998 7 99999999862 3221111 1111000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
++... .++.++++.+ ....+|+||+|||+.++.++++.+.+++.+ ++.+++++||++
T Consensus 54 ~~~~~-------------------~~~~~~~~~~-~~~~~D~vilavK~~~~~~~~~~l~~~~~~---~~~iv~lqNG~~ 110 (313)
T PRK06249 54 GDFHL-------------------PPVQAYRSAE-DMPPCDWVLVGLKTTANALLAPLIPQVAAP---DAKVLLLQNGLG 110 (313)
T ss_pred CCeee-------------------cCceEEcchh-hcCCCCEEEEEecCCChHhHHHHHhhhcCC---CCEEEEecCCCC
Confidence 00000 1234455554 367899999999999999999999999876 688999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCC-c-----cEEEEeCCchhhhhhccCceEEEEeC-C-----hhHHHHHHHHHcCCCC
Q 012349 202 AELEAVPRIITPTQMINRATGVPI-E-----NILYLGGPNIASEIYNKEYANARICG-A-----EKWRKPLAKFLRRPHF 269 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~-~-----~i~vlsGP~~a~ev~~g~~t~~~~~~-~-----~~~~~~l~~ll~~~g~ 269 (465)
.. +.+.+.++... . ..+...+|++....+.|...+....+ + .+..+.+.++|+..++
T Consensus 111 ~~-----------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~ 179 (313)
T PRK06249 111 VE-----------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGI 179 (313)
T ss_pred cH-----------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCC
Confidence 76 56777776321 0 01345577776655555433222222 2 3556789999999999
Q ss_pred eEEecCChHHHHHHHHHHHHHHHHHHhhhcccCC----CcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcc
Q 012349 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTL 345 (465)
Q Consensus 270 ~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g----~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~ 345 (465)
.+..++|+....|.+.+.|..-.+...+.+..+| ++..+ .++...+.|+..++++.|....... +-..+..+
T Consensus 180 ~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~-~l~~~~~~E~~~va~a~Gi~~~~~~---~~~~~~~~ 255 (313)
T PRK06249 180 DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSR-ALIRALMAEVIQGAAACGHTLPEGY---ADHMLAVT 255 (313)
T ss_pred CceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHH-HHHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHh
Confidence 9999999999999999988765555555444432 23444 7999999999999999998632210 10111111
Q ss_pred c-Cchh-HHHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 346 L-KGRN-AWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 346 ~-~sRN-~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
. .+.| -++=+++.+|+.+ .+|.+.. .++++++++|+ + +|+++++|.++..
T Consensus 256 ~~~~~~~sSM~qD~~~gr~t-----------Eid~i~G--~vv~~a~~~Gi--------------~-~P~~~~l~~~l~~ 307 (313)
T PRK06249 256 ERMPDYRPSMYHDFEEGRPL-----------ELEAIYA--NPLAAARAAGC--------------A-MPRVEMLYQALEF 307 (313)
T ss_pred hcCCCCCChHHHHHHCCCcc-----------cHHHHhh--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 0 0001 1222333333322 3555544 89999999995 6 8999999999874
No 15
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.89 E-value=1.7e-21 Score=198.82 Aligned_cols=296 Identities=16% Similarity=0.162 Sum_probs=187.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ | ++|++|+|++. .+. +++.+. ......+..
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~-G-----~~V~~~~r~~~-~~~---------~~~~g~-------~~~~~~~~~---- 54 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA-G-----ADVTLIGRARI-GDE---------LRAHGL-------TLTDYRGRD---- 54 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc-C-----CcEEEEecHHH-HHH---------HHhcCc-------eeecCCCcc----
Confidence 58999999999999999999999 7 99999999652 232 222110 000000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
. ..+ ...+.++++. +++.++|+||+|||++++.++++.+.+++.+ +++|++++||+..
T Consensus 55 ~-~~~-----------------~~~~~~~~~~-~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~---~~iii~~~nG~~~ 112 (341)
T PRK08229 55 V-RVP-----------------PSAIAFSTDP-AALATADLVLVTVKSAATADAAAALAGHARP---GAVVVSFQNGVRN 112 (341)
T ss_pred e-ecc-----------------cceeEeccCh-hhccCCCEEEEEecCcchHHHHHHHHhhCCC---CCEEEEeCCCCCc
Confidence 0 000 0134556676 4578999999999999999999999998876 6889999999976
Q ss_pred cccccccCCCHHHHHHhHhCCCCc-----cE-EEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 203 ELEAVPRIITPTQMINRATGVPIE-----NI-LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~-----~i-~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
. +.+++.++.... ++ ++..||+.+.....|... +. ..+..+.++++|+..+++++.++|
T Consensus 113 ~-----------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~---~~-~~~~~~~~~~~l~~~g~~~~~~~d 177 (341)
T PRK08229 113 A-----------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALA---IE-ASPALRPFAAAFARAGLPLVTHED 177 (341)
T ss_pred H-----------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceE---ec-CCchHHHHHHHHHhcCCCceecch
Confidence 4 456666543110 11 256788887655455422 22 234568899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccC----CCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC---chhhhh-hcccCc
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTN----ESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTY-VTLLKG 348 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~----g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~---glgDl~-~T~~~s 348 (465)
+.+.+|.|+++|.+ .+...+.+..+ .++..+ .++..++.|+..++++.|.+++.+..+ ++..++ ..+...
T Consensus 178 i~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~~-~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 255 (341)
T PRK08229 178 MRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYR-RCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLF 255 (341)
T ss_pred hHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchHH-HHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHH
Confidence 99999999999974 33333333332 223444 688999999999999999987654321 111010 000000
Q ss_pred hhHHHHHHHh-cCCC-hhhHhHhh-cCCc-ccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 349 RNAWYGQELA-KGRL-TLDLGDSI-KGKG-MIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 349 RN~~~G~~l~-~g~~-~~~~~~~~-~~~~-~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
+ ..+..+. .... ...+.+++ .+++ .+|-+.. .++++|+++|+ + +|+++++|+++..
T Consensus 256 ~--~~~~~~~~~~~~~~~Sm~~D~~~~r~tEi~~i~G--~i~~~a~~~gv--------------~-~P~~~~~~~~~~~ 315 (341)
T PRK08229 256 R--RLAGRMLAIDPLARSSMSDDLAAGRATEIDWING--EIVRLAGRLGA--------------P-APVNARLCALVHE 315 (341)
T ss_pred H--HHHHHhhccCCccCchHHHHHHcCCcchHHHHhh--HHHHHHHHcCC--------------C-CcHHHHHHHHHHH
Confidence 0 0111111 1100 01122222 2222 3555444 89999999995 6 8999999999853
No 16
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.88 E-value=5.8e-22 Score=200.09 Aligned_cols=283 Identities=13% Similarity=0.053 Sum_probs=185.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.|||+|+|+|++|+.+|..|++. | ++|++++|++++++.++.+ ++ ..+... +
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G-----~~V~lv~r~~~~~~~i~~~--------~G----------l~i~~~----g 53 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-G-----LPVRLILRDRQRLAAYQQA--------GG----------LTLVEQ----G 53 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEechHHHHHHhhc--------CC----------eEEeeC----C
Confidence 47999999999999999999998 7 8999999987766654322 11 011100 0
Q ss_pred C-CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 D-RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~-~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. ... ++...+ . +.....|+||+|||++++.++++++.+++.+ ++.|++++||+.
T Consensus 54 ~~~~~--------------------~~~~~~-~-~~~~~~D~viv~vK~~~~~~al~~l~~~l~~---~t~vv~lQNGv~ 108 (305)
T PRK05708 54 QASLY--------------------AIPAET-A-DAAEPIHRLLLACKAYDAEPAVASLAHRLAP---GAELLLLQNGLG 108 (305)
T ss_pred cceee--------------------ccCCCC-c-ccccccCEEEEECCHHhHHHHHHHHHhhCCC---CCEEEEEeCCCC
Confidence 0 000 011111 1 1235789999999999999999999999987 789999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCC-ccE-----EEEeCCchhhhhhccCceEEEEeC-ChhHHHHHHHHHcCCCCeEEec
Q 012349 202 AELEAVPRIITPTQMINRATGVPI-ENI-----LYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDN 274 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~-~~i-----~vlsGP~~a~ev~~g~~t~~~~~~-~~~~~~~l~~ll~~~g~~v~~s 274 (465)
.. +.+.+.++... ... +.+.+|+...+.+.+. +.++. ..+..+.+.++|+..++.+..+
T Consensus 109 ~~-----------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~---~~~G~~~~~~~~~l~~~l~~ag~~~~~~ 174 (305)
T PRK05708 109 SQ-----------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGF---TWLGDPRNPTAPAWLDDLREAGIPHEWT 174 (305)
T ss_pred CH-----------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEE---EEEcCCCCcchHHHHHHHHhcCCCCccC
Confidence 86 56777776321 010 2233566655544332 22332 3355688999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhh-ccc-CchhH-
Q 012349 275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYV-TLL-KGRNA- 351 (465)
Q Consensus 275 ~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~-T~~-~sRN~- 351 (465)
+|+.+..|.|.+.|..-.+...+.+..+|.--....++...+.|+..++++.|...... .+-+.+. .+. .+.|+
T Consensus 175 ~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~---~~~~~~~~~~~~~~~~~s 251 (305)
T PRK05708 175 VDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAA---NLHEEVQRVIQATAANYS 251 (305)
T ss_pred HHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHhccCCCc
Confidence 99999999999999866666666555543210011578899999999999999753211 0001110 000 01111
Q ss_pred HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 352 WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 352 ~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
++=+++.+|+++ .+|-+.. .++++++++|+ + +|.++++|..+..
T Consensus 252 SM~qD~~~gR~t-----------Eid~i~G--~vvr~a~~~Gv--------------~-~P~~~~l~~~v~~ 295 (305)
T PRK05708 252 SMYQDVRAGRRT-----------EISYLLG--YACRAADRHGL--------------P-LPRLQHLQQRLVA 295 (305)
T ss_pred HHHHHHHcCCce-----------eehhhhh--HHHHHHHHcCC--------------C-CchHHHHHHHHHH
Confidence 233333333321 3444444 89999999995 6 8999999999864
No 17
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.88 E-value=4e-21 Score=194.08 Aligned_cols=283 Identities=20% Similarity=0.241 Sum_probs=196.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|+|+|+||+.+|..|++. | ++|+++.|++. ++++++++| .+.... +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-----~~V~~~~R~~~-~~~l~~~GL-------------------~i~~~~---~- 50 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-----HDVTLLVRSRR-LEALKKKGL-------------------RIEDEG---G- 50 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEecHHH-HHHHHhCCe-------------------EEecCC---C-
Confidence 7999999999999999999999 7 89999999885 665444332 111100 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.. . .....+.+. +...++|+||++||+.++.++++.+.+++++ ++.|++++||+.+.
T Consensus 51 -~~------------~------~~~~~~~~~-~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~---~t~vl~lqNG~g~~ 107 (307)
T COG1893 51 -NF------------T------TPVVAATDA-EALGPADLVIVTVKAYQLEEALPSLAPLLGP---NTVVLFLQNGLGHE 107 (307)
T ss_pred -cc------------c------cccccccCh-hhcCCCCEEEEEeccccHHHHHHHhhhcCCC---CcEEEEEeCCCcHH
Confidence 00 0 012222333 4467999999999999999999999999987 78999999999987
Q ss_pred ccccccCCCHHHHHHhHhCCC------CccEEEEeCCchhhhhhccCceEEEEeC-ChhHHHHHHHHHcCCCCeEEecCC
Q 012349 204 LEAVPRIITPTQMINRATGVP------IENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~------~~~i~vlsGP~~a~ev~~g~~t~~~~~~-~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
|.+.+.++.. ....+++.||+.....+.|.+......+ .++..+.+.++|+..++.+.+++|
T Consensus 108 -----------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 108 -----------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred -----------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 5566665532 1123577788888877766654443333 456789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCC----CcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhh-hccc--Cch
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTY-VTLL--KGR 349 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g----~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~-~T~~--~sR 349 (465)
+....|.+++.|..-...+.+....+| ++.++ .++.+.+.|+..++.+.|.....- .-|.+ ..+. ...
T Consensus 177 i~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~-~l~~~~~~E~~~v~~~~g~~~~~~----~~~~v~~~~~~~~~~ 251 (307)
T COG1893 177 ILAAIWRKLVVNAAINPLTALLDCNNGELLENPEAR-ALIRALVAEVVAVARAEGVELPEE----VVERVLAVIRATDAE 251 (307)
T ss_pred HHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHH-HHHHHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHhcccc
Confidence 999999999999866655555444443 23333 789999999999999998532110 00111 1110 112
Q ss_pred hH-HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 350 NA-WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 350 N~-~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
|+ ++=+++.+|+.+ .+|-+.. +++++++++|+ + +|.+++||.++..
T Consensus 252 ~~sSM~qDl~~gr~t-----------Eid~i~G--~vv~~a~~~gi--------------~-~P~~~~L~~lvk~ 298 (307)
T COG1893 252 NYSSMLQDLEKGRPT-----------EIDAING--AVVRLAKKHGL--------------A-TPVNDTLYALLKA 298 (307)
T ss_pred cCchHHHHHHcCCcc-----------cHHHHhh--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 22 244455555432 2333333 79999999995 6 8999999999974
No 18
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.85 E-value=8.1e-20 Score=181.71 Aligned_cols=275 Identities=17% Similarity=0.193 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCCcccchhhh
Q 012349 53 AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEIL 132 (465)
Q Consensus 53 amGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~ 132 (465)
++|+.+|..|+++ | |+|++|+|+ ++++.++.+++ .+.+.. ++...
T Consensus 1 aiG~~~a~~L~~~-G-----~~V~l~~r~-~~~~~i~~~Gl-------------------~i~~~~---~~~~~------ 45 (293)
T TIGR00745 1 AVGSLYGAYLARA-G-----HDVTLLARG-EQLEALNQEGL-------------------RIVSLG---GEFQF------ 45 (293)
T ss_pred CchHHHHHHHHhC-C-----CcEEEEecH-HHHHHHHHCCc-------------------EEEecC---CcEEE------
Confidence 5899999999998 8 999999997 45554333221 111100 00000
Q ss_pred hccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCC
Q 012349 133 KDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT 212 (465)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~ 212 (465)
.++.+++++++ +.++|+||+|||+++++++++.+++++.+ +++|++++||+...
T Consensus 46 -------------~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~l~~~l~~---~~~iv~~qNG~g~~--------- 99 (293)
T TIGR00745 46 -------------RPVSAATSPEE-LPPADLVIITVKAYQTEEAAALLLPLIGK---NTKVLFLQNGLGHE--------- 99 (293)
T ss_pred -------------cccccccChhh-cCCCCEEEEeccchhHHHHHHHhHhhcCC---CCEEEEccCCCCCH---------
Confidence 02345566655 67899999999999999999999999886 78999999999876
Q ss_pred HHHHHHhHhCCCC------ccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHHHHHHHHH
Q 012349 213 PTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGL 286 (465)
Q Consensus 213 ~se~I~e~lg~~~------~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~gal 286 (465)
+.+.+.++.+. ...+.+.||++......+...+.......+..+.+.++|+..++++..++|+.+.+|.+.+
T Consensus 100 --~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~ 177 (293)
T TIGR00745 100 --ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLL 177 (293)
T ss_pred --HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHh
Confidence 56666665321 1124567888776665554322222222255788999999999999999999999999999
Q ss_pred HHH-HHHHHHhhhcccCC----CcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhc-c-cCchhH-HHHHHHh
Q 012349 287 KNV-YAIGAGMVAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVT-L-LKGRNA-WYGQELA 358 (465)
Q Consensus 287 KNv-iAia~Gi~~gl~~g----~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T-~-~~sRN~-~~G~~l~ 358 (465)
.|+ +...+++++ ..+| ++.. ..++...+.|+..++++.|.+..... +-+.+.+ + ..+.|+ ++-+++.
T Consensus 178 ~N~~~n~l~al~~-~~~g~l~~~~~~-~~l~~~~~~E~~~v~~a~G~~~~~~~---~~~~~~~~~~~~~~~~sSm~~D~~ 252 (293)
T TIGR00745 178 VNAAINPLTALLD-CKNGELLENPEA-RELLRRLMDEVVRVARAEGVDLPDDE---VEELVRAVIRMTAENTSSMLQDLL 252 (293)
T ss_pred heechhHHHHHHC-CccceeccChhH-HHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCCCCChHHHHHH
Confidence 998 444444443 3332 2223 37999999999999999998654321 1121111 1 122222 3445555
Q ss_pred cCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 359 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
+|+.+ | +|- ....++++++++|+ + +|.++.+|.++..
T Consensus 253 ~gr~t-E----------id~--i~G~~v~~a~~~gv--------------~-~P~~~~l~~~~~~ 289 (293)
T TIGR00745 253 RGRRT-E----------IDA--INGAVVRLAEKLGI--------------D-APVNRTLYALLKA 289 (293)
T ss_pred cCCcc-h----------HHH--hccHHHHHHHHcCC--------------C-CChHHHHHHHHHH
Confidence 55432 2 222 22379999999995 6 8999999999964
No 19
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.75 E-value=9.2e-17 Score=168.59 Aligned_cols=224 Identities=17% Similarity=0.172 Sum_probs=157.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||..+|..|+++ | |+|++|+++++.++.+ +++. ++.+.++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~-G-----~~V~~~d~~~~~v~~l---------~~g~--------~~~~e~~l~----- 52 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL-G-----HEVTGVDIDQEKVDKL---------NKGK--------SPIYEPGLD----- 52 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc-C-----CeEEEEECCHHHHHHh---------hcCC--------CCCCCCCHH-----
Confidence 6899999999999999999998 7 9999999998877653 3221 333444331
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCCCEE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~~iv 193 (465)
|++.+.... .++.+++++.++++++|+||+|||+. ++.++++.+.+.+++ ++++
T Consensus 53 ------~~~~~~~~~-------g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~---g~lv 116 (411)
T TIGR03026 53 ------ELLAKALAA-------GRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRK---GATV 116 (411)
T ss_pred ------HHHHHhhhc-------CCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCC---CCEE
Confidence 122111000 13677889888889999999999975 478888888888776 5666
Q ss_pred EEeeccccccccccccCCCH-HHHHHhHhCCC-CccEEEEeCCchhhhhhc----cCceEEEEeCChhHHHHHHHHHcCC
Q 012349 194 ISLAKGVEAELEAVPRIITP-TQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRP 267 (465)
Q Consensus 194 Is~~kGi~~~~~~~~~~~~~-se~I~e~lg~~-~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~~~~~~l~~ll~~~ 267 (465)
|.. .++.+.+ ...+ .+++++..|.. ...+.+.++|.++.+... ..+..++++.+++..+.++++|+..
T Consensus 117 i~~-STv~pgt-----~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~ 190 (411)
T TIGR03026 117 VLE-STVPPGT-----TEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPI 190 (411)
T ss_pred EEe-CcCCCCc-----hHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 644 4777652 2222 23333322321 123568999999887553 2244556677788889999999877
Q ss_pred C-CeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 268 H-FTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 268 g-~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
+ ..++...|+...|..|.+.|.+. +.....++|+..+|+++|.++.++..
T Consensus 191 ~~~~~~~~~~~~~Ae~~Kl~~N~~~------------------a~~ia~~nE~~~la~~~GiD~~~v~~ 241 (411)
T TIGR03026 191 IEDGPVLVTSIETAEMIKLAENTFR------------------AVKIAFANELARICEALGIDVYEVIE 241 (411)
T ss_pred ccCCCEEcCCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5 46778899999999999999751 12235689999999999999887754
No 20
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.72 E-value=7.7e-16 Score=153.26 Aligned_cols=196 Identities=16% Similarity=0.073 Sum_probs=142.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||.+|+..|.++ |.+.+ .+|++|+|+++.++.+ .+. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-g~~~~-~~I~v~~r~~~~~~~l--------~~~-------------~---------- 49 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-NIVSP-DQIICSDLNVSNLKNA--------SDK-------------Y---------- 49 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCCC-ceEEEECCCHHHHHHH--------HHh-------------c----------
Confidence 6899999999999999999987 74332 5799999987543320 000 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
++..+++..+++.++|+||+|||++.+.++++++.+++++ ++++||+..|+..+
T Consensus 50 -----------------------g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~---~~lvISi~AGi~i~ 103 (272)
T PRK12491 50 -----------------------GITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIKN---DVIVVTIAAGKSIK 103 (272)
T ss_pred -----------------------CcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcC---CcEEEEeCCCCcHH
Confidence 2334566777788999999999999999999999998876 67999999999875
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
.|++.++.. .+ +++.+||.+..++.|... +..+ .++++.+.+.++|+..|...++.++.+..
T Consensus 104 ------------~l~~~l~~~-~~-vvR~MPN~~~~vg~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~~~d~- 167 (272)
T PRK12491 104 ------------STENEFDRK-LK-VIRVMPNTPVLVGEGMSA-LCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLMDV- 167 (272)
T ss_pred ------------HHHHhcCCC-Cc-EEEECCChHHHHcCceEE-EEeCCCCCHHHHHHHHHHHHcCCCEEEEcHHHhhh-
Confidence 477777632 23 689999999999998633 2332 24567889999999999888887775432
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
+...+ +.| | +++...+..+..-+..+|.+.++.
T Consensus 168 --------~tals------gsg-P----Af~~~~~eal~~a~v~~Gl~~~~A 200 (272)
T PRK12491 168 --------VTSIS------GSS-P----AYVYMFIEAMADAAVLGGMPRKQA 200 (272)
T ss_pred --------HHHhc------cCc-H----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 11111 122 3 455566667777777788876544
No 21
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.70 E-value=1.4e-15 Score=148.04 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=135.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC-chhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~-~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.|||+|||+|.||++++..|.++ |.... .++.+++|+ ++..+. +..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-~~~~~-~~i~~~~~~~~~~~~~--------------------------~~~----- 50 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-SKEYI-EEIIVSNRSNVEKLDQ--------------------------LQA----- 50 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCCCc-CeEEEECCCCHHHHHH--------------------------HHH-----
Confidence 47999999999999999999877 51110 136677764 332221 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. .++..++|.+++++++|+||+|||++.++++++++.++++ +++|||+++|++
T Consensus 51 ---~--------------------~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~----~~~vis~~~gi~ 103 (245)
T PRK07634 51 ---R--------------------YNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS----NQLVVTVAAGIG 103 (245)
T ss_pred ---H--------------------cCcEEeCChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc----CCEEEEECCCCC
Confidence 0 0234567788888999999999999999999999998765 368999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHcCCCCeEEecCChHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (465)
.+ .|++.++.. ...+++|||++.+++.+.+..... +.+++..+.++++|+..|-..++.++..
T Consensus 104 ~~------------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~~~-- 167 (245)
T PRK07634 104 PS------------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEV-- 167 (245)
T ss_pred HH------------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHHHc--
Confidence 75 577777632 235689999999999997665433 3466788999999999998887765532
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
+.++..+| .+ + +++...+..+...+...|.+++..
T Consensus 168 -------~~~~a~~g------s~-p----a~~~~~~~a~~~~~~~~Gl~~~~a 202 (245)
T PRK07634 168 -------HQLTAVTG------SA-P----AFLYYFAESLIEATKSYGVDEETA 202 (245)
T ss_pred -------chHHhhhc------ch-H----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 22222111 11 2 334444555556677778776543
No 22
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.65 E-value=7.3e-15 Score=146.53 Aligned_cols=161 Identities=12% Similarity=0.070 Sum_probs=121.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh-hhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~-~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
||||+|||+|+||++++..|.++ |.+.+ ++|.+|+|+++. .+. +.. ..+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~-g~~~~-~~V~~~~r~~~~~~~~---------l~~-------------~~~------ 50 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET-EVATP-EEIILYSSSKNEHFNQ---------LYD-------------KYP------ 50 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ccEEEEeCCcHHHHHH---------HHH-------------HcC------
Confidence 47899999999999999999987 63322 689999987531 111 000 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.+.++.+..+++.++|+||+|||++.+.++++++.+++.+ +++|||+++|++
T Consensus 51 -------------------------~~~~~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~---~~~ivS~~aGi~ 102 (277)
T PRK06928 51 -------------------------TVELADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTP---DRHVVSIAAGVS 102 (277)
T ss_pred -------------------------CeEEeCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 2334567777788999999999999999999999998875 678999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
.+ .|++.++. .+ +++.+||.+..++.|... +..+ .+++..+.+.++|+..|...+++++.
T Consensus 103 ~~------------~l~~~~~~--~~-vvR~MPN~~~~~g~g~t~-~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~ 164 (277)
T PRK06928 103 LD------------DLLEITPG--LQ-VSRLIPSLTSAVGVGTSL-VAHAETVNEANKSRLEETLSHFSHVMTIREEN 164 (277)
T ss_pred HH------------HHHHHcCC--CC-EEEEeCccHHHHhhhcEE-EecCCCCCHHHHHHHHHHHHhCCCEEEEchhh
Confidence 75 46777753 23 689999999999998633 3332 24567889999999999888887664
No 23
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.65 E-value=1.7e-14 Score=142.42 Aligned_cols=195 Identities=20% Similarity=0.152 Sum_probs=143.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||++||+|+||.+|+..|.++ |.+.+ .+|.+.+|+++..+. +. .
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~-g~~~~-~~I~v~~~~~e~~~~---------l~----------------~------- 46 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS-GALPP-EEIIVTNRSEEKRAA---------LA----------------A------- 46 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc-CCCCc-ceEEEeCCCHHHHHH---------HH----------------H-------
Confidence 47999999999999999999998 74433 589899988764331 00 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
++ ++..++|.++++..+|+||+||||+.+++++.++++ +.+ +++|||+..|+..
T Consensus 47 --~~--------------------g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~---~~lvISiaAGv~~ 100 (266)
T COG0345 47 --EY--------------------GVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTK---DKLVISIAAGVSI 100 (266)
T ss_pred --Hc--------------------CCcccCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccC---CCEEEEEeCCCCH
Confidence 01 112267777889999999999999999999999998 444 6899999999987
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChHHH
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (465)
+ .+++.+| . .+ .++.+||++..++.|... +..+ .+++..+.+.++|++-|-.+++.++.+..
T Consensus 101 ~------------~l~~~l~-~-~~-vvR~MPNt~a~vg~g~t~-i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da 164 (266)
T COG0345 101 E------------TLERLLG-G-LR-VVRVMPNTPALVGAGVTA-ISANANVSEEDKAFVEALLSAVGKVVEVEESLMDA 164 (266)
T ss_pred H------------HHHHHcC-C-Cc-eEEeCCChHHHHcCccee-eecCccCCHHHHHHHHHHHHhcCCeEEechHHhhH
Confidence 5 5788887 2 23 689999999999999743 2322 35677889999999999999988876533
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
+... .+.| | +++...+..|..-+...|.+.++.
T Consensus 165 ---------~Tai------sGSg-P----Ayv~~~iEal~~agv~~Gl~~~~A 197 (266)
T COG0345 165 ---------VTAL------SGSG-P----AYVFLFIEALADAGVRLGLPREEA 197 (266)
T ss_pred ---------HHHH------hcCC-H----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 1111 1222 3 456666677777777888766544
No 24
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=3.2e-14 Score=145.28 Aligned_cols=219 Identities=18% Similarity=0.143 Sum_probs=154.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.+|...|..||+. | |+|+.++.++++++. +|.+. .|.|-|+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~-G-----HeVv~vDid~~KV~~---------ln~g~--------~PI~EpgLe----- 52 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL-G-----HEVVCVDIDESKVEL---------LNKGI--------SPIYEPGLE----- 52 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHH---------HhCCC--------CCCcCccHH-----
Confidence 8999999999999999999999 8 999999999988876 44443 578888764
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCCCEE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~~iv 193 (465)
|++.++... .++.+|+|.+++++++|++|+|||.. ++++++++|.++++. .+ +
T Consensus 53 ------~ll~~~~~~-------gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~---~~-v 115 (414)
T COG1004 53 ------ELLKENLAS-------GRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDG---KA-V 115 (414)
T ss_pred ------HHHHhcccc-------CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCC---Ce-E
Confidence 455542211 14899999999999999999999753 688889999998875 33 3
Q ss_pred EEeecc-ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhcc----CceEEEEeCChh-HHHHHHHHHcCC
Q 012349 194 ISLAKG-VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICGAEK-WRKPLAKFLRRP 267 (465)
Q Consensus 194 Is~~kG-i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g----~~t~~~~~~~~~-~~~~l~~ll~~~ 267 (465)
.+.|. ++.. +...+.+.+.+.... ..+.+.+.|.|-+|...- .|..++++..++ ..+.+++++...
T Consensus 116 -vV~KSTVPvG-----t~~~v~~~i~~~~~~--~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~ 187 (414)
T COG1004 116 -VVIKSTVPVG-----TTEEVRAKIREENSG--KDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPF 187 (414)
T ss_pred -EEEcCCCCCC-----chHHHHHHHHhhccc--CCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhh
Confidence 34555 3443 333333444433321 246799999999986642 266677776554 467788887542
Q ss_pred ---CCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhc
Q 012349 268 ---HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 334 (465)
Q Consensus 268 ---g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~ 334 (465)
.. ....+|+...|+-+..-| .+.|.-+ .-++||..+|+..|.+...+.
T Consensus 188 ~~~~~-p~l~t~~~~AE~IKyaaN-----------------afLAtKI-sFiNEia~ice~~g~D~~~V~ 238 (414)
T COG1004 188 LRQDV-PILFTDLREAELIKYAAN-----------------AFLATKI-SFINEIANICEKVGADVKQVA 238 (414)
T ss_pred hhcCC-CEEEecchHHHHHHHHHH-----------------HHHHHHH-HHHHHHHHHHHHhCCCHHHHH
Confidence 33 345678888888554444 2233333 458999999999999877654
No 25
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.61 E-value=4.3e-14 Score=139.75 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=132.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||++++..|.++ +.+.+ .++++++|+++. +
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~-~~~~~-~~i~~~~~~~~~-----------------------------~--------- 43 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS-NIIGK-ENIYYHTPSKKN-----------------------------T--------- 43 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC-CCCCc-ceEEEECCChhc-----------------------------C---------
Confidence 7999999999999999999987 53322 357777765421 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
......+..++++++|+||+|||++.++++++++.+++.+ ..|||+++|+..+
T Consensus 44 -----------------------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~----~~iIS~~aGi~~~ 96 (260)
T PTZ00431 44 -----------------------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGS----KLLISICGGLNLK 96 (260)
T ss_pred -----------------------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccC----CEEEEEeCCccHH
Confidence 0123355666778999999999999999999999988764 4789999999864
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
.+++.++. ....++.+||++..+..+... ++.. .+++..+.++++|+..|..+++.++.+..-
T Consensus 97 ------------~l~~~~~~--~~~vvr~mPn~p~~~g~g~t~-i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d~~ 161 (260)
T PTZ00431 97 ------------TLEEMVGV--EAKIVRVMPNTPSLVGQGSLV-FCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMDIA 161 (260)
T ss_pred ------------HHHHHcCC--CCeEEEECCCchhHhcceeEE-EEeCCCCCHHHHHHHHHHHHhCCcEEEEChHHcchh
Confidence 57777753 223579999999988877533 2332 245678899999999999999887643221
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
. ..+ +.| + +++...+..+..-+.+.|.+.++.
T Consensus 162 t---------a~~------gsg-P----A~~~~~~~al~~~~v~~Gl~~~~a 193 (260)
T PTZ00431 162 T---------AIS------GCG-P----AYVFLFIESLIDAGVKNGLNRDVS 193 (260)
T ss_pred h---------hhc------CCH-H----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 1 111 112 3 345555666667777778766544
No 26
>PRK07680 late competence protein ComER; Validated
Probab=99.57 E-value=3.4e-13 Score=134.02 Aligned_cols=161 Identities=12% Similarity=0.195 Sum_probs=119.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||++++..|.++ |.+.+ ++|.+|+|+++..+. +.. ..+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~-g~~~~-~~v~v~~r~~~~~~~---------~~~-------------~~~-------- 48 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES-GAVKP-SQLTITNRTPAKAYH---------IKE-------------RYP-------- 48 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCHHHHHH---------HHH-------------HcC--------
Confidence 6899999999999999999988 63322 479999998764432 100 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
++..+.+..+++.++|+||+|||++.+.++++++.+++.+ +++||++++|+..+
T Consensus 49 -----------------------g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~---~~~iis~~ag~~~~ 102 (273)
T PRK07680 49 -----------------------GIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTD---EHCLVSITSPISVE 102 (273)
T ss_pred -----------------------CeEEECCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCCHH
Confidence 2345667777788999999999999999999999998875 67999999998643
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
.+++.++. . .+...||.+.....|.. .++.+ .+++..+.+.++|+..|..+++.+|+..
T Consensus 103 ------------~L~~~~~~---~-~~r~~p~~~~~~~~G~t-~~~~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~~ 163 (273)
T PRK07680 103 ------------QLETLVPC---Q-VARIIPSITNRALSGAS-LFTFGSRCSEEDQQKLERLFSNISTPLVIEEDITR 163 (273)
T ss_pred ------------HHHHHcCC---C-EEEECCChHHHHhhccE-EEeeCCCCCHHHHHHHHHHHHcCCCEEEEChHhcc
Confidence 46666652 2 46788998876666653 22333 2445678999999999988888888543
No 27
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.56 E-value=2.7e-13 Score=133.86 Aligned_cols=156 Identities=16% Similarity=0.139 Sum_probs=113.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~-~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+|+||++|+..|.++ |...+ .+|++| +|++++.+. + ..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~-g~~~~-~~i~v~~~r~~~~~~~---------~-----------------~~------ 46 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS-GVVPP-SRISTADDSNPARRDV---------F-----------------QS------ 46 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCCc-ceEEEEeCCCHHHHHH---------H-----------------HH------
Confidence 7999999999999999999988 72111 278888 887654321 0 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++..+++..++++++|+||+|+|++.++++++.+.+.+.+ +++|||+++|+..
T Consensus 47 -----------------------~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~---~~~iIs~~~g~~~ 100 (266)
T PLN02688 47 -----------------------LGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSK---DKLLVSVAAGITL 100 (266)
T ss_pred -----------------------cCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCC---CCEEEEecCCCcH
Confidence 02345567777788999999999999999999999887765 6789999999866
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
+ .+.+.++. .+ .+..+|+++..+..+.. .++.. .+++..+.++++|+..|-..+..+
T Consensus 101 ~------------~l~~~~~~--~~-vvr~mP~~~~~~~~~~~-~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e 159 (266)
T PLN02688 101 A------------DLQEWAGG--RR-VVRVMPNTPCLVGEAAS-VMSLGPAATADDRDLVATLFGAVGKIWVVDE 159 (266)
T ss_pred H------------HHHHHcCC--CC-EEEECCCcHHHHhCceE-EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCH
Confidence 4 35566653 13 45689999988776643 23332 356778999999999887334444
No 28
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.54 E-value=8.7e-13 Score=131.56 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=118.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~-~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+|+||++|+..|.++ |.+.+ ++|++|+|+.+ .++. +.. .
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~-g~~~~-~~v~v~~r~~~~~~~~---------l~~---------------~------- 50 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA-NVVKG-EQITVSNRSNETRLQE---------LHQ---------------K------- 50 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCCHHHHHH---------HHH---------------h-------
Confidence 7999999999999999999988 63322 68999998753 2221 000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++..+.++.+++.++|+||+|||++.+.++++.+.+.+.+ +++|||+++|+..
T Consensus 51 -----------------------~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~---~~liIs~~aGi~~ 104 (279)
T PRK07679 51 -----------------------YGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHN---NQLIISLLAGVST 104 (279)
T ss_pred -----------------------cCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEECCCCCH
Confidence 02345667778888999999999999999999999888765 6799999999976
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
+ .+++.++.. . .++...||++..+..+.. .++.+. +++..+.++.+|+..|-.+++.++.
T Consensus 105 ~------------~l~~~~~~~-~-~v~r~mPn~~~~~~~~~t-~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~ 166 (279)
T PRK07679 105 H------------SIRNLLQKD-V-PIIRAMPNTSAAILKSAT-AISPSKHATAEHIQTAKALFETIGLVSVVEEED 166 (279)
T ss_pred H------------HHHHHcCCC-C-eEEEECCCHHHHHhcccE-EEeeCCCCCHHHHHHHHHHHHhCCcEEEeCHHH
Confidence 5 355655421 2 367899999988776643 232222 3567789999999999877777663
No 29
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.49 E-value=8.4e-13 Score=132.93 Aligned_cols=257 Identities=12% Similarity=0.085 Sum_probs=151.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|.||.++|..|+++ | ++|++|+|+++.++.+. ..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~-G-----~~V~v~d~~~~~~~~~~---------~~----------------------- 43 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQ-G-----HQLQVFDVNPQAVDALV---------DK----------------------- 43 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH---------Hc-----------------------
Confidence 5899999999999999999998 7 89999999987554311 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHH---HHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~---l~~~l~~~~~~~ivIs~~kG 199 (465)
....+.++.++++++|+||+|+|++ .+++++.. +.+.+++ ++++|.++.+
T Consensus 44 -----------------------g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~---g~lvid~sT~ 97 (296)
T PRK15461 44 -----------------------GATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSR---DALVIDMSTI 97 (296)
T ss_pred -----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCC---CCEEEECCCC
Confidence 1223456777889999999999987 57888743 4444544 6777777765
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
-+... ..+.+.+.+ .|.......+..||..+. .|..+ ++++++++..++++.+|+.-+-++++..++-.
T Consensus 98 ~p~~~------~~l~~~l~~-~g~~~ldapV~g~~~~a~---~g~l~-~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~G~ 166 (296)
T PRK15461 98 HPLQT------DKLIADMQA-KGFSMMDVPVGRTSDNAI---TGTLL-LLAGGTAEQVERATPILMAMGNELINAGGPGM 166 (296)
T ss_pred CHHHH------HHHHHHHHH-cCCcEEEccCCCCHHHHH---hCcEE-EEECCCHHHHHHHHHHHHHHcCCeEeeCCCCH
Confidence 43321 111122221 121111112333333332 45443 35677888888999999887777777777522
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcc-cCchhH--HHHHH
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTL-LKGRNA--WYGQE 356 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~-~~sRN~--~~G~~ 356 (465)
-...+.+-|. .......++.|...++++.|.+++.+.. ++... ..+.-. ++...
T Consensus 167 g~~~Kl~~N~------------------~~~~~~~~~~Ea~~l~~~~Gld~~~~~~-----~l~~~~~~~~~~~~~~~~~ 223 (296)
T PRK15461 167 GIRVKLINNY------------------MSIALNALSAEAAVLCEALGLSFDVALK-----VMSGTAAGKGHFTTTWPNK 223 (296)
T ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHhcCcccChHHHccccch
Confidence 2223333332 1122335668999999999999877642 22211 011000 11111
Q ss_pred HhcCCChhhHhHhhcCCccc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHH
Q 012349 357 LAKGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 421 (465)
Q Consensus 357 l~~g~~~~~~~~~~~~~~~v-EG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il 421 (465)
+.++. ....-.+ -..+.+..+.+++++.|+ + +|+.+.+.+++
T Consensus 224 ~~~~~--------~~~~f~~~~~~KD~~l~~~~a~~~g~--------------~-~p~~~~~~~~~ 266 (296)
T PRK15461 224 VLKGD--------LSPAFMIDLAHKDLGIALDVANQLHV--------------P-MPLGAASREVY 266 (296)
T ss_pred hccCC--------CCCCcchHHHHhhHHHHHHHHHHcCC--------------C-ChHHHHHHHHH
Confidence 11111 0000011 223555678889999994 6 79988888777
No 30
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.48 E-value=1.4e-12 Score=125.63 Aligned_cols=177 Identities=19% Similarity=0.192 Sum_probs=117.8
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+||| +|+||+++|..|+++ | ++|++|+|+++.++.++.+.+ ..+...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G-----~~V~v~~r~~~~~~~l~~~~~------------------~~~~~~----- 51 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-G-----NKIIIGSRDLEKAEEAAAKAL------------------EELGHG----- 51 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-C-----CEEEEEEcCHHHHHHHHHHHH------------------hhcccc-----
Confidence 7999997 899999999999998 7 999999999876554221100 001100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
|+. .++.. ++..+++.++|+||+|||++.++++++++.+.+. +++||+++||++.
T Consensus 52 ------------g~~--------~~~~~-~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~----~~vvI~~~ngi~~ 106 (219)
T TIGR01915 52 ------------GSD--------IKVTG-ADNAEAAKRADVVILAVPWDHVLKTLESLRDELS----GKLVISPVVPLAS 106 (219)
T ss_pred ------------CCC--------ceEEE-eChHHHHhcCCEEEEECCHHHHHHHHHHHHHhcc----CCEEEEeccCcee
Confidence 000 01222 3556778999999999999999999999987665 4789999999986
Q ss_pred ccccc-----ccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCc----eEEEEeCC-hhHHHHHHHHHcCC-CCeE
Q 012349 203 ELEAV-----PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY----ANARICGA-EKWRKPLAKFLRRP-HFTV 271 (465)
Q Consensus 203 ~~~~~-----~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~----t~~~~~~~-~~~~~~l~~ll~~~-g~~v 271 (465)
..... ......++.+++.++.. .+ ++...|+++.++..+.. ....++++ ++..+.+.++.+.. ||+.
T Consensus 107 ~~~~~~~~~~~~~~s~~e~l~~~~p~~-~~-VVka~~~~~a~~~~~~~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~ 184 (219)
T TIGR01915 107 DGGKGARYLPPEEGSAAEQAAALLPET-SR-VVAAFHNLSAVLLQDVDDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRA 184 (219)
T ss_pred cCCCCceecCCCCCcHHHHHHHhCCCC-Ce-EeeccccCCHHHhcCCCCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCc
Confidence 21000 01134568888888631 22 56777888776554321 11234554 45567888999887 9987
Q ss_pred EecCC
Q 012349 272 WDNGD 276 (465)
Q Consensus 272 ~~s~D 276 (465)
.....
T Consensus 185 vd~G~ 189 (219)
T TIGR01915 185 LDAGP 189 (219)
T ss_pred ccCCc
Confidence 54443
No 31
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.48 E-value=3.1e-12 Score=126.38 Aligned_cols=155 Identities=20% Similarity=0.215 Sum_probs=113.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||+|||+|+||++++..|.++ |. . .++|.+|+|+++..+++ ... +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~-g~-~-~~~v~v~~r~~~~~~~~---------~~~------------~--------- 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS-GV-P-AKDIIVSDPSPEKRAAL---------AEE------------Y--------- 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC-CC-C-cceEEEEcCCHHHHHHH---------HHh------------c---------
Confidence 68999999999999999999987 52 1 15799999987654321 100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
++.++.+.++++.++|+||+|||++.++++++++.+++ + +.|||+++|+..
T Consensus 49 ------------------------g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~-~----~~vvs~~~gi~~ 99 (267)
T PRK11880 49 ------------------------GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQL-D----KLVVSIAAGVTL 99 (267)
T ss_pred ------------------------CCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhc-C----CEEEEecCCCCH
Confidence 12344566677889999999999999999999998876 3 579999999965
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEec
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN 274 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s 274 (465)
+ .+++.++.. .+ .+...|+++..+..+. +.++.+ .+++..+.++.+|+..|..+++.
T Consensus 100 ~------------~l~~~~~~~-~~-iv~~~P~~p~~~~~~~-~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 100 A------------RLERLLGAD-LP-VVRAMPNTPALVGAGM-TALTANALVSAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred H------------HHHHhcCCC-Cc-EEEecCCchHHHcCce-EEEecCCCCCHHHHHHHHHHHHhCCeEEEEC
Confidence 3 466666522 23 4668999998776663 333333 25677789999999999766665
No 32
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.48 E-value=3.9e-12 Score=127.62 Aligned_cols=256 Identities=15% Similarity=0.129 Sum_probs=151.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||..+|..|+++ | ++|.+|+|+++..+.+ .+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~-g-----~~v~~~d~~~~~~~~~---------~~----------------------- 43 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVYDRNPEAVAEV---------IA----------------------- 43 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHH---------HH-----------------------
Confidence 47999999999999999999998 7 8999999987644321 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH---HHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl---~~l~~~l~~~~~~~ivIs~~k 198 (465)
.....+++++++++++|+||+|+|. ..++.++ +.+.+.+.+ +++++.++.
T Consensus 44 -----------------------~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iiid~st 97 (296)
T PRK11559 44 -----------------------AGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVVIDMSS 97 (296)
T ss_pred -----------------------CCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCC---CcEEEECCC
Confidence 0123456777888999999999994 5566665 446666655 677776653
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhh--hccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev--~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
. .+.+ ++.+.+.+... .+.++..|-+..+. ..+..+ ++++++++..+.++.+|+..+.++....+
T Consensus 98 ~-~~~~---------~~~l~~~~~~~--g~~~~d~pv~g~~~~a~~g~l~-i~~gg~~~~~~~~~~~l~~~~~~~~~~g~ 164 (296)
T PRK11559 98 I-APLA---------SREIAAALKAK--GIEMLDAPVSGGEPKAIDGTLS-VMVGGDKAIFDKYYDLMKAMAGSVVHTGD 164 (296)
T ss_pred C-CHHH---------HHHHHHHHHHc--CCcEEEcCCCCCHHHHhhCcEE-EEECCCHHHHHHHHHHHHHhcCCeEEeCC
Confidence 3 3321 12333333211 11234444332211 133333 44567777788999999887777665555
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhccc-CchhH-HHH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL-KGRNA-WYG 354 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~-~sRN~-~~G 354 (465)
.-.-+..+.+-|.+. +....+++|+..+++..|.+++++.. .+.+.. .|.-. ..+
T Consensus 165 ~g~a~~~Kl~~n~~~------------------~~~~~~~~Ea~~l~~~~Gi~~~~~~~-----~l~~~~~~s~~~~~~~ 221 (296)
T PRK11559 165 IGAGNVTKLANQVIV------------------ALNIAAMSEALVLATKAGVNPDLVYQ-----AIRGGLAGSTVLDAKA 221 (296)
T ss_pred cCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHHHH-----HHhcCcccCHHHHhhc
Confidence 433344444444211 12235688999999999998876642 111110 11100 011
Q ss_pred HHHhcCCChhhHhHhhcCCcccch-HHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHH
Q 012349 355 QELAKGRLTLDLGDSIKGKGMIQG-ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 421 (465)
Q Consensus 355 ~~l~~g~~~~~~~~~~~~~~~vEG-~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il 421 (465)
..+.++ .. ..+-+++- ......+.+++++.|+ + +|+.+.+++++
T Consensus 222 ~~~~~~-d~-------~~~f~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~ 266 (296)
T PRK11559 222 PMVMDR-NF-------KPGFRIDLHIKDLANALDTSHGVGA--------------P-LPLTAAVMEMM 266 (296)
T ss_pred hHhhcC-CC-------CCCcchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHH
Confidence 111111 11 00112332 2335678899999994 6 79999999887
No 33
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.46 E-value=1.7e-12 Score=130.16 Aligned_cols=261 Identities=15% Similarity=0.094 Sum_probs=155.8
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCCccc
Q 012349 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLH 127 (465)
Q Consensus 48 IIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~ 127 (465)
|||+|.||.++|..|+++ | ++|++|+|+++.++.+ ...
T Consensus 1 ~IGlG~mG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l---------~~~--------------------------- 38 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-G-----HPVRVFDLFPDAVEEA---------VAA--------------------------- 38 (288)
T ss_pred CCcccHhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHH---------HHc---------------------------
Confidence 689999999999999998 7 8999999998654431 100
Q ss_pred chhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH---HHHHHhhhccCCCCEEEEeecccccc
Q 012349 128 ADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl---~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
+...++++.++++++|+||+|||+ +.+++++ +.+.+.+.+ ++++|.++ ++.++
T Consensus 39 -------------------g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~---g~~vid~s-t~~p~ 95 (288)
T TIGR01692 39 -------------------GAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAK---GSLLIDCS-TIDPD 95 (288)
T ss_pred -------------------CCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCC---CCEEEECC-CCCHH
Confidence 123456778889999999999997 6788888 677777665 67787777 77765
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHHHHHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~ 283 (465)
+ ...+++.+.+ .|.......+..||..+. .|..+ ++++++++..++++.+|+..+-++++..+.-.-+..
T Consensus 96 ~-----~~~~~~~~~~-~g~~~vdaPv~Gg~~~a~---~g~l~-~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~ 165 (288)
T TIGR01692 96 S-----ARKLAELAAA-HGAVFMDAPVSGGVGGAR---AGTLT-FMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAA 165 (288)
T ss_pred H-----HHHHHHHHHH-cCCcEEECCCCCCHHHHh---hCcEE-EEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHH
Confidence 2 2334444433 232111112333343332 34333 345677777888999998877666666654333334
Q ss_pred HHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcccCchhHHHHHHHhcCCCh
Q 012349 284 GGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLT 363 (465)
Q Consensus 284 galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~G~~l~~g~~~ 363 (465)
|++-|.+ ......++.|...++++.|.+++.+. |.+.+.. +++..+-.........
T Consensus 166 Kl~~n~~------------------~~~~~~~~~Ea~~la~~~Gld~~~~~-----~~~~~~~-~~s~~~~~~~~~~~~~ 221 (288)
T TIGR01692 166 KICNNML------------------LGISMIGTAEAMALGEKLGLDPKVLF-----EIANTSS-GRCWSSDTYNPVPGVM 221 (288)
T ss_pred HHHHHHH------------------HHHHHHHHHHHHHHHHHcCCCHHHHH-----HHHhcCC-ccCcHHHHhCCCcccc
Confidence 4444421 11223568899999999999987764 3333321 1121111100000000
Q ss_pred h-h-HhHhhcCCc-ccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 364 L-D-LGDSIKGKG-MIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 364 ~-~-~~~~~~~~~-~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
. . ........- .--..+.++.+.+++++.|+ + +|+.+.+.++..
T Consensus 222 ~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 268 (288)
T TIGR01692 222 PQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGA--------------P-TPLGALARQLYS 268 (288)
T ss_pred ccccccCCCCCCcchHHHHhhHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 0 0 000011011 12334566678899999994 6 799888887763
No 34
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.46 E-value=2.7e-12 Score=127.89 Aligned_cols=200 Identities=16% Similarity=0.189 Sum_probs=135.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||++||.|.||..+|..|.++ | |+|++|+|++++... ....
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a-G-----~~v~v~~r~~~ka~~--------~~~~------------------------ 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA-G-----HEVTVYNRTPEKAAE--------LLAA------------------------ 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC-C-----CEEEEEeCChhhhhH--------HHHH------------------------
Confidence 6899999999999999999999 8 999999999875221 0110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH---HHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE---EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~---~l~~~l~~~~~~~ivIs~~kG 199 (465)
.......++.+++..+|+||.++|. .++++++- .+.+.+++ ++++|.++ .
T Consensus 43 ----------------------~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~---G~i~IDmS-T 96 (286)
T COG2084 43 ----------------------AGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP---GAIVIDMS-T 96 (286)
T ss_pred ----------------------cCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC---CCEEEECC-C
Confidence 0233456677889999999999985 57888884 46666666 67777666 4
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
++++. .+.+.+.+++ .|.......|..|+--+. .|..+ ++++++++..++++.+|+..+-+++...+.-.
T Consensus 97 isp~~-----a~~~a~~~~~-~G~~~lDAPVsGg~~~A~---~GtLt-imvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~ 166 (286)
T COG2084 97 ISPET-----ARELAAALAA-KGLEFLDAPVSGGVPGAA---AGTLT-IMVGGDAEAFERAKPVLEAMGKNIVHVGPVGA 166 (286)
T ss_pred CCHHH-----HHHHHHHHHh-cCCcEEecCccCCchhhh---hCceE-EEeCCCHHHHHHHHHHHHHhcCceEEECCCCc
Confidence 55541 2233333333 332211123444444443 45443 45678888999999999999998888877722
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
-...|.+.|++. .....++.|...++++.|.+++.+..
T Consensus 167 G~~~Kl~nn~l~------------------~~~~~a~aEAl~la~k~Gld~~~~~~ 204 (286)
T COG2084 167 GQAAKLANNILL------------------AGNIAALAEALALAEKAGLDPDVVLE 204 (286)
T ss_pred hHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 333444444321 23346788999999999999987754
No 35
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.40 E-value=1.2e-11 Score=124.03 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=122.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
||+|||+|.||+.+|..|+++ | ++|++|+|+++..+.+ ...
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G-----~~V~~~dr~~~~~~~~---------~~~------------------------ 41 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-G-----YQLHVTTIGPEVADEL---------LAA------------------------ 41 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHH---------HHC------------------------
Confidence 599999999999999999998 7 8999999998654421 100
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH---HHHHHhhhccCCCCEEEEeeccc
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl---~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+....++..++++++|+||+|+|.. .+++++ +.+.+.+.+ +++++.++.+
T Consensus 42 ----------------------g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iivd~st~- 95 (291)
T TIGR01505 42 ----------------------GAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKP---GKTLVDMSSI- 95 (291)
T ss_pred ----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCC---CCEEEECCCC-
Confidence 1112356677889999999999974 566665 334455554 5777766533
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhh--ccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~--~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
.+.+ ++.+.+.+.... +.++..|-+..+.. .+.. .++++++++..+.++.+|+..+.+++...+.-
T Consensus 96 ~~~~---------~~~l~~~l~~~g--~~~~~~pv~g~~~~a~~g~l-~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g 163 (291)
T TIGR01505 96 SPIE---------SKRFAKAVKEKG--IDYLDAPVSGGEIGAIEGTL-SIMVGGDQAVFDRVKPLFEALGKNIVLVGGNG 163 (291)
T ss_pred CHHH---------HHHHHHHHHHcC--CCEEecCCCCCHHHHhcCCE-EEEecCCHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence 3321 122333332111 12344565433322 2332 24556777778899999998887776655432
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 279 THEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 279 gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
..+..+++-| ........+++|+..++++.|.+++++..
T Consensus 164 ~a~~~Kl~~n------------------~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~ 202 (291)
T TIGR01505 164 DGQTCKVANQ------------------IIVALNIEAVSEALVFASKAGVDPVRVRQ 202 (291)
T ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2233333322 12233456789999999999999887653
No 36
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.39 E-value=2e-11 Score=128.58 Aligned_cols=218 Identities=14% Similarity=-0.007 Sum_probs=137.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||..+|..|+++ | ++|+.|++++++++.+ +.+. .+.+.+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~-G-----~~V~~~D~~~~~v~~l---------~~g~--------~~~~e~~l~---- 55 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR-Q-----KQVIGVDINQHAVDTI---------NRGE--------IHIVEPDLD---- 55 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC-C-----CEEEEEeCCHHHHHHH---------HCCC--------CCcCCCCHH----
Confidence 48999999999999999999999 8 9999999999877653 3221 122222221
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------chHHHHHHHHHHhhhccCCCCE
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPV 192 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------~~l~~vl~~l~~~l~~~~~~~i 192 (465)
+++.+.... ..+.++++. ++||+||+|||. ..+.++++.+.+++++ +++
T Consensus 56 -------~~l~~~~~~-------g~l~~~~~~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~---g~i 114 (415)
T PRK11064 56 -------MVVKTAVEG-------GYLRATTTP----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK---GDL 114 (415)
T ss_pred -------HHHHHHhhc-------Cceeeeccc----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC---CCE
Confidence 122110000 134555543 479999999997 5888888999998876 565
Q ss_pred EEEeeccccccccccccCCCHHHHHHhHhCC--------CCccEEEEeCCchhhhhhc----cCceEEEEeC-ChhHHHH
Q 012349 193 IISLAKGVEAELEAVPRIITPTQMINRATGV--------PIENILYLGGPNIASEIYN----KEYANARICG-AEKWRKP 259 (465)
Q Consensus 193 vIs~~kGi~~~~~~~~~~~~~se~I~e~lg~--------~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~-~~~~~~~ 259 (465)
||..+ .+.+. +.+.+...+.+.-.. ....+.+.+.|.+..+... +.+..+ +++ +++..++
T Consensus 115 VI~~S-Tv~pg-----tt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~~~ 187 (415)
T PRK11064 115 VILES-TSPVG-----ATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRV-IGGMTPVCSAR 187 (415)
T ss_pred EEEeC-CCCCC-----HHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEE-EEeCCHHHHHH
Confidence 55333 55554 222233333332110 0123556788877654321 223333 354 7777888
Q ss_pred HHHHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 260 l~~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
++++|+..+-.+....++...|..|.+-|.+ + +.-...++|+..+|+.+|.++..+
T Consensus 188 ~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~-----------------~-a~~ia~~nE~~~lae~~GiD~~~v 243 (415)
T PRK11064 188 ASELYKIFLEGECVVTNSRTAEMCKLTENSF-----------------R-DVNIAFANELSLICADQGINVWEL 243 (415)
T ss_pred HHHHHHHhcCCCeeeCCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHhCCCHHHH
Confidence 8888887654555667888888888777742 1 223456889999999999875543
No 37
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.38 E-value=3.5e-12 Score=106.42 Aligned_cols=94 Identities=27% Similarity=0.334 Sum_probs=71.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~-~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
||+|||+|+||++++..|.++ |. . .++|.++ +|+++.++++. +. .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-g~-~-~~~v~~~~~r~~~~~~~~~---------~~-------------~--------- 46 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-GI-K-PHEVIIVSSRSPEKAAELA---------KE-------------Y--------- 46 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TS---GGEEEEEEESSHHHHHHHH---------HH-------------C---------
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC-C-ceeEEeeccCcHHHHHHHH---------Hh-------------h---------
Confidence 799999999999999999998 64 3 3789966 88887554310 00 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+..++. +..++++++|+||+|||++.+.++++++ +...+ ++++||+++|
T Consensus 47 -----------------------~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~---~~~vis~~ag 96 (96)
T PF03807_consen 47 -----------------------GVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLK---GKLVISIAAG 96 (96)
T ss_dssp -----------------------TTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHT---TSEEEEESTT
T ss_pred -----------------------ccccccCChHHhhccCCEEEEEECHHHHHHHHHHH-hhccC---CCEEEEeCCC
Confidence 123333 6778899999999999999999999999 55555 6899999987
No 38
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.37 E-value=5.5e-11 Score=124.16 Aligned_cols=210 Identities=15% Similarity=0.118 Sum_probs=134.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||..+|..++ . | |+|++|++++++++.++ ++. .+.+-+++.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~-G-----~~VigvD~d~~kv~~l~---------~g~--------~~~~e~~l~----- 51 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q-N-----HEVVALDILPSRVAMLN---------DRI--------SPIVDKEIQ----- 51 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h-C-----CcEEEEECCHHHHHHHH---------cCC--------CCCCCcCHH-----
Confidence 68999999999999998887 5 6 89999999998877643 221 122233321
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-----------hHHHHHHHHHHhhhccCCCCE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-----------~l~~vl~~l~~~l~~~~~~~i 192 (465)
+++..+ ...+..+++..+++.++|+||+|||.. +++++++.|.+ +++ +++
T Consensus 52 ------~~l~~~---------~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~---g~l 112 (388)
T PRK15057 52 ------QFLQSD---------KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INP---YAV 112 (388)
T ss_pred ------HHHHhC---------CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCC---CCE
Confidence 111110 013556777778889999999999964 67788888876 454 555
Q ss_pred EEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc----cCceEEEEeCChhHHHHHHHHHcCCC
Q 012349 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRPH 268 (465)
Q Consensus 193 vIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~~~~~~l~~ll~~~g 268 (465)
|| ....+.+.+ ++.+.+.+.. ..+.++|.++.+... ..+..++++.+++.++++.++|....
T Consensus 113 VV-~~STv~pgt---------t~~l~~~~~~----~~v~~~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~ 178 (388)
T PRK15057 113 MV-IKSTVPVGF---------TAAMHKKYRT----ENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGA 178 (388)
T ss_pred EE-EeeecCCch---------HHHHHHHhhc----CcEEECcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhh
Confidence 54 333455542 1334333321 135668998876442 12344566777777777877775422
Q ss_pred C--eEE-ecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 269 F--TVW-DNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 269 ~--~v~-~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
+ .+. +..|+...|+.|.+-|.+ + +.-...++|+..+|+++|.+...+
T Consensus 179 ~~~~~~~~~~~~~~AE~~Kl~~N~~-----------------~-a~~Ia~~NE~a~lae~~GiD~~eV 228 (388)
T PRK15057 179 IKQNIPTLFTDSTEAEAIKLFANTY-----------------L-AMRVAYFNELDSYAESLGLNTRQI 228 (388)
T ss_pred hcCCCceeeCCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHhCcCHHHH
Confidence 1 222 467888888888777741 2 223356889999999999876544
No 39
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.37 E-value=2.9e-11 Score=122.26 Aligned_cols=179 Identities=16% Similarity=0.182 Sum_probs=118.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++||+|||+|.||+++|..|+++ | ++|++|+++++.+++++.. +.... ..+.+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~-g-----~~V~~~d~~~~~~~~~~~~-----~~~~~---------~~~~~~------ 57 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK-G-----LQVVLIDVMEGALERARGV-----IERAL---------GVYAPL------ 57 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHHH---------HHhhhc------
Confidence 47899999999999999999988 7 8999999998776653321 11000 000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.. . ...+.++.+++|++++++++|+||+|||++. ...++.++.+++++ +++|+|.+.|+
T Consensus 58 --~~------~--------~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~ii~s~tsg~ 118 (311)
T PRK06130 58 --GI------A--------SAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDP---DTIFATNTSGL 118 (311)
T ss_pred --cc------H--------HHHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCC---CcEEEECCCCC
Confidence 00 0 0000135677888888899999999999874 78899999888776 67787899887
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEec-CCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s-~Di 277 (465)
... .+.+.++.+ .+ ++...|+.+..... ...++.+ .+++..+.+.++|+..|..+... .|.
T Consensus 119 ~~~------------~l~~~~~~~-~~-~ig~h~~~p~~~~~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~ 182 (311)
T PRK06130 119 PIT------------AIAQAVTRP-ER-FVGTHFFTPADVIP--LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDI 182 (311)
T ss_pred CHH------------HHHhhcCCc-cc-EEEEccCCCCccCc--eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 653 355555432 22 34455666554332 2222222 25677899999999999876655 577
Q ss_pred HHHHH
Q 012349 278 VTHEV 282 (465)
Q Consensus 278 ~gve~ 282 (465)
.|..+
T Consensus 183 ~G~i~ 187 (311)
T PRK06130 183 PGFIA 187 (311)
T ss_pred CCcHH
Confidence 66533
No 40
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.37 E-value=2.1e-11 Score=122.31 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=124.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|||+|.||+++|..|+.+ | ++|++|+++++.+++... .+++....+....+.. .....
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~-----~i~~~~~~l~~~~~~g-~~~~~----- 65 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART-G-----YDVTIVDVSEEILKNAME-----LIESGPYGLRNLVEKG-KMSED----- 65 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHH-----HHHhhhhhHHHHHHcC-CCCHH-----
Confidence 36899999999999999999998 7 899999999987664221 1111100000000000 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.. +++ +.++.++++. ++++++|+||+|+|++. ..++++++.+++++ +++++|.++|+
T Consensus 66 --~~--~~~-------------~~~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~---~~il~S~tsg~ 124 (291)
T PRK06035 66 --EA--KAI-------------MARIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSP---ETIIASNTSGI 124 (291)
T ss_pred --HH--HHH-------------HhCcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEEcCCCC
Confidence 00 000 0146677777 56899999999999885 78899999998876 78899999998
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
... .+.+.+..+ .++ +-..|..+..+... ..++.+ .+++..+.+..+++..|..+....|.-
T Consensus 125 ~~~------------~la~~~~~~-~r~-ig~hf~~P~~~~~~--vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~p 188 (291)
T PRK06035 125 MIA------------EIATALERK-DRF-IGMHWFNPAPVMKL--IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVP 188 (291)
T ss_pred CHH------------HHHhhcCCc-ccE-EEEecCCCcccCcc--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 654 355555432 222 22233333222221 112222 256778899999999998888778876
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012349 279 THEVMGGLKNVYAIGAGMV 297 (465)
Q Consensus 279 gve~~galKNviAia~Gi~ 297 (465)
|-....++-|.+.-+.-++
T Consensus 189 gfv~nRl~~~~~~ea~~~~ 207 (291)
T PRK06035 189 GFFTTRFIEGWLLEAIRSF 207 (291)
T ss_pred CeeHHHHHHHHHHHHHHHH
Confidence 6555555555555555554
No 41
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.36 E-value=3.1e-10 Score=114.47 Aligned_cols=196 Identities=13% Similarity=0.066 Sum_probs=119.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||+++|..|+++ | ++|.+|+|+++.++.+. +.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~-g-----~~V~~~dr~~~~~~~l~---------~~g---------------------- 43 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR-G-----HDCVGYDHDQDAVKAMK---------EDR---------------------- 43 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHH---------HcC----------------------
Confidence 6899999999999999999998 7 99999999987655321 100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCH---HHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNL---QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl---~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.....++ .+.+..+|+||++||+..++++++++.+.+++ ++++|.++++.
T Consensus 44 ------------------------~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~---g~ivid~st~~ 96 (298)
T TIGR00872 44 ------------------------TTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELAPTLEK---GDIVIDGGNSY 96 (298)
T ss_pred ------------------------CcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHHhhCCC---CCEEEECCCCC
Confidence 0011222 33456789999999999999999999998876 67899988876
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCC---eEEecCCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNGDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~---~v~~s~Di 277 (465)
...+ .. ..+.+.+ .|.......+..||.-+. .| + .++++++++..+.++.+|+..+- .+++..+.
T Consensus 97 ~~~t-----~~-~~~~~~~-~g~~~vda~vsGg~~~a~---~G-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~ 164 (298)
T TIGR00872 97 YKDS-----LR-RYKLLKE-KGIHLLDCGTSGGVWGRE---RG-Y-CFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPC 164 (298)
T ss_pred cccH-----HH-HHHHHHh-cCCeEEecCCCCCHHHHh---cC-C-eeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCc
Confidence 5442 11 1111221 121111112222222222 34 3 34677788778888888875442 24444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhC--CCcchh
Q 012349 278 VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLA--EEPEKL 333 (465)
Q Consensus 278 ~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G--~~~~t~ 333 (465)
-.-...+.+.|.+. .-+..++.|...++++.| .+++++
T Consensus 165 G~~~~~K~~~n~l~------------------~~~~~~~aE~~~l~~~~g~~ld~~~~ 204 (298)
T TIGR00872 165 GSGHFVKMVHNGIE------------------YGMMAAIAEGFEILRNSQFDFDIPEV 204 (298)
T ss_pred cHhHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCcCHHHH
Confidence 22233444444211 122355667777777654 455554
No 42
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.35 E-value=4.4e-11 Score=117.86 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=124.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||.+++..|.+. |. .. ..+.+|+|+++..+.+ .. .++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~-g~-~~-~~i~v~~r~~~~~~~l---------~~-------------~~~-------- 47 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS-PA-DV-SEIIVSPRNAQIAARL---------AE-------------RFP-------- 47 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC-CC-Ch-heEEEECCCHHHHHHH---------HH-------------HcC--------
Confidence 5899999999999999999987 62 11 3468898887543320 00 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
...++++.+++++++|+||+|||++.+.++++++. +.+ ++++||+..|+..+
T Consensus 48 -----------------------~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~--~~~---~~~vis~~ag~~~~ 99 (258)
T PRK06476 48 -----------------------KVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRALR--FRP---GQTVISVIAATDRA 99 (258)
T ss_pred -----------------------CceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHHhc--cCC---CCEEEEECCCCCHH
Confidence 13455677777889999999999999999998873 333 67899999887664
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHHHHHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~ 283 (465)
.+++.++.. ...++..|+++.....+. +. +.... +.++++|+..|-.++..+.
T Consensus 100 ------------~l~~~~~~~--~~~~r~~P~~~~a~~~g~-t~--~~~~~---~~~~~l~~~lG~~~~~~~e------- 152 (258)
T PRK06476 100 ------------ALLEWIGHD--VKLVRAIPLPFVAERKGV-TA--IYPPD---PFVAALFDALGTAVECDSE------- 152 (258)
T ss_pred ------------HHHHHhCCC--CCEEEECCCChhhhCCCC-eE--ecCCH---HHHHHHHHhcCCcEEECCh-------
Confidence 577766532 235788999887655543 22 22222 4788888888877665422
Q ss_pred HHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhc
Q 012349 284 GGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 334 (465)
Q Consensus 284 galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~ 334 (465)
..+|.+..+++ + + +.+...+.|+...+.+.|.+++...
T Consensus 153 -~~~d~~~a~~s-------~-~----a~~~~~~~~~~~~~~~~Gl~~~~a~ 190 (258)
T PRK06476 153 -EEYDLLAAASA-------L-M----ATYFGILETATGWLEEQGLKRQKAR 190 (258)
T ss_pred -Hhccceeehhc-------c-H----HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 11222211111 0 1 2223467888899999999876543
No 43
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.34 E-value=1.3e-10 Score=117.15 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=125.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||+++|..|+++ | ++|.+|+|+++.++.+ .+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~---------~~~----------------------- 42 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG-G-----HEVVGYDRNPEAVEAL---------AEE----------------------- 42 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHH---------HHC-----------------------
Confidence 6899999999999999999998 7 8999999998655431 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+...+++++++++. +|+||+++|.. .++++++.+.+.+++ ++++|.++++
T Consensus 43 -----------------------g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~---g~ivid~st~ 96 (301)
T PRK09599 43 -----------------------GATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSP---GDIVIDGGNS 96 (301)
T ss_pred -----------------------CCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence 12344566666554 69999999987 889999988888776 6788888766
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCC----eEEecC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF----TVWDNG 275 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~----~v~~s~ 275 (465)
-...+ ..+.+.+++ .|.......+..||.-+. .| . .++++++++..++++.+|+..+- ++++..
T Consensus 97 ~~~~~------~~~~~~~~~-~g~~~~dapvsG~~~~a~---~g-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~G 164 (301)
T PRK09599 97 YYKDD------IRRAELLAE-KGIHFVDVGTSGGVWGLE---RG-Y-CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAG 164 (301)
T ss_pred ChhHH------HHHHHHHHH-cCCEEEeCCCCcCHHHHh---cC-C-eEEecCCHHHHHHHHHHHHHHcccccCCeEeEC
Confidence 44321 112222222 221111112333332222 45 3 35677888888888888887665 556666
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHH--hCCCcchhc
Q 012349 276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL--LAEEPEKLA 334 (465)
Q Consensus 276 Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a--~G~~~~t~~ 334 (465)
++=.-...+.+.|.+. .-+..++.|...++++ .|.+++++.
T Consensus 165 ~~G~g~~~Kl~~n~l~------------------~~~~~~~aEa~~l~~~~~~gld~~~~~ 207 (301)
T PRK09599 165 PVGAGHFVKMVHNGIE------------------YGMMQAYAEGFELLEASRFDLDLAAVA 207 (301)
T ss_pred CCcHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6422233444444211 1233567788888888 788776654
No 44
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.34 E-value=1.2e-10 Score=122.92 Aligned_cols=221 Identities=11% Similarity=0.100 Sum_probs=140.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||.|.||..+|..|++. ++|+.|++++++++.+ +++. .+.+.++++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~~-------~~V~g~D~~~~~ve~l---------~~G~--------~~~~e~~~~--- 57 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGKS-------RQVVGFDVNKKRILEL---------KNGV--------DVNLETTEE--- 57 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhcC-------CEEEEEeCCHHHHHHH---------HCcC--------CCCCCCCHH---
Confidence 458999999999999999998753 8999999999887763 3221 122222211
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCCC
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVP 191 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~~ 191 (465)
|+... ..+.++++.+ ++++||++|+|||.. ++....+.|.+++++ ++
T Consensus 58 --------~l~~~-----------g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~---g~ 114 (425)
T PRK15182 58 --------ELREA-----------RYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR---GD 114 (425)
T ss_pred --------HHHhh-----------CCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC---CC
Confidence 12111 1456777775 589999999999853 555556788888876 56
Q ss_pred EEEEeeccccccccccccCCCHHHHHHhHhCCC-CccEEEEeCCchhhhhhcc----CceEEEEeCChhHHHHHHHHHcC
Q 012349 192 VIISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYNK----EYANARICGAEKWRKPLAKFLRR 266 (465)
Q Consensus 192 ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~-~~~i~vlsGP~~a~ev~~g----~~t~~~~~~~~~~~~~l~~ll~~ 266 (465)
+|| ....+.+.+ +.......+.+..|.. ...+.+.+-|.+..+.... .+..++.+.+++..+.++.+++.
T Consensus 115 lVI-~~STv~pgt----t~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~ 189 (425)
T PRK15182 115 IVV-YESTVYPGC----TEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQ 189 (425)
T ss_pred EEE-EecCCCCcc----hHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHHHH
Confidence 554 444566552 1112223333322321 1234566778777664422 23334555566666777777775
Q ss_pred CC-CeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 267 PH-FTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 267 ~g-~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
.. ...+...|+...|+.|.+-|.+ + ++-...++|+..+|+++|.+...+..
T Consensus 190 ~~~~~~~~~~~~~~AE~~Kl~~N~~-----------------~-av~Ia~~NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 190 IISAGTYKAESIKVAEAAKVIENTQ-----------------R-DLNIALVNELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred HhhcCcEEecCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 43 2356677888888888777742 1 23346789999999999999876643
No 45
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.34 E-value=4e-12 Score=117.02 Aligned_cols=152 Identities=20% Similarity=0.258 Sum_probs=98.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||+|||.|.||+.||..|+++ | ++|++|+|+++..+++ ..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~-g-----~~v~~~d~~~~~~~~~--------------------------~~------ 42 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA-G-----YEVTVYDRSPEKAEAL--------------------------AE------ 42 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT-T-----TEEEEEESSHHHHHHH--------------------------HH------
T ss_pred CCEEEEEchHHHHHHHHHHHHhc-C-----CeEEeeccchhhhhhh--------------------------HH------
Confidence 58999999999999999999998 7 8999999998654431 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHHH--HHHhhhccCCCCEEEEeecc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE--ISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~~--l~~~l~~~~~~~ivIs~~kG 199 (465)
.......++.++++.+|+||+++|. +.+++++.. +.+.+.+ ++++|.++ .
T Consensus 43 -----------------------~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~---g~iiid~s-T 95 (163)
T PF03446_consen 43 -----------------------AGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRP---GKIIIDMS-T 95 (163)
T ss_dssp -----------------------TTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-T---TEEEEE-S-S
T ss_pred -----------------------hhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhcccc---ceEEEecC-C
Confidence 0345678899999999999999997 689999998 8887776 67776555 3
Q ss_pred ccccccccccCCCHHHHHHhHh---CCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEE
Q 012349 200 VEAELEAVPRIITPTQMINRAT---GVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~l---g~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (465)
+.+++ ++.+.+.+ |.......+..||.-+. .|..+ ++++++++..++++.+|+.-+-+++
T Consensus 96 ~~p~~---------~~~~~~~~~~~g~~~vdapV~Gg~~~a~---~g~l~-~~~gG~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 96 ISPET---------SRELAERLAAKGVRYVDAPVSGGPPGAE---EGTLT-IMVGGDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp --HHH---------HHHHHHHHHHTTEEEEEEEEESHHHHHH---HTTEE-EEEES-HHHHHHHHHHHHHHEEEEE
T ss_pred cchhh---------hhhhhhhhhhccceeeeeeeeccccccc---ccceE-EEccCCHHHHHHHHHHHHHHhCCce
Confidence 44431 12333333 21111223444443332 45433 4567888888889999886665555
No 46
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.34 E-value=7.2e-11 Score=127.03 Aligned_cols=177 Identities=19% Similarity=0.219 Sum_probs=117.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.|||+|||+|.||+++|..|+++ | ++|++|+++++.++.+. +.++... ++..+++..
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~-G-----~~V~v~D~~~~~~~~~~-----~~~~~~~-------~~~~~l~~~----- 60 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA-G-----IDVAVFDPHPEAERIIG-----EVLANAE-------RAYAMLTDA----- 60 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHH-----HHHHHHH-------HHHhhhccc-----
Confidence 47999999999999999999999 8 89999999987665421 1111100 011112211
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+. ...++.+++++++++++||+||.++|++. .+.++.++.+++++ +++|.|.+.|+
T Consensus 61 --~~~----------------~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~---~~iI~SsTsgi 119 (495)
T PRK07531 61 --PLP----------------PEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARP---DALIGSSTSGF 119 (495)
T ss_pred --hhh----------------hhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 000 00136778899889999999999999885 66678888888776 67888999888
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEecC-Ch
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNG-DL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~-Di 277 (465)
... .+.+.+..+ ...++..|+.+.... ....++.+. +++..+.++.+|+..|-...+.. |+
T Consensus 120 ~~s------------~l~~~~~~~--~r~~~~hP~nP~~~~--~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~ 183 (495)
T PRK07531 120 LPS------------DLQEGMTHP--ERLFVAHPYNPVYLL--PLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEI 183 (495)
T ss_pred CHH------------HHHhhcCCc--ceEEEEecCCCcccC--ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCC
Confidence 754 245555432 235667777655322 222222222 36778999999999887776654 44
Q ss_pred HH
Q 012349 278 VT 279 (465)
Q Consensus 278 ~g 279 (465)
-|
T Consensus 184 ~g 185 (495)
T PRK07531 184 DA 185 (495)
T ss_pred cc
Confidence 33
No 47
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.33 E-value=4.4e-11 Score=120.32 Aligned_cols=255 Identities=12% Similarity=0.090 Sum_probs=147.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||.|.||.++|..|.++ | ++|++|+|++. .++ ....
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~-G-----~~v~v~~~~~~-~~~---------~~~~----------------------- 41 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA-G-----HQLHVTTIGPV-ADE---------LLSL----------------------- 41 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEeCCHh-HHH---------HHHc-----------------------
Confidence 5899999999999999999998 7 89999998753 221 0000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHH---HHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~---l~~~l~~~~~~~ivIs~~kG 199 (465)
+.....++.++++.+|+||+|||.. .+++++.. +.+.+.+ ++++|.++ .
T Consensus 42 -----------------------g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~---g~ivvd~s-T 94 (292)
T PRK15059 42 -----------------------GAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK---GKTIVDMS-S 94 (292)
T ss_pred -----------------------CCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCC---CCEEEECC-C
Confidence 1223456777788999999999976 66776632 3333343 56676665 4
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
+.+.+ .+.+.+.+.+ .|.......+..||.-+. .|..+ ++++++++..++++.+|+..+-++++..+. |
T Consensus 95 ~~p~~-----~~~~~~~~~~-~G~~~vdaPVsGg~~~a~---~g~l~-~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~-G 163 (292)
T PRK15059 95 ISPIE-----TKRFARQVNE-LGGDYLDAPVSGGEIGAR---EGTLS-IMVGGDEAVFERVKPLFELLGKNITLVGGN-G 163 (292)
T ss_pred CCHHH-----HHHHHHHHHH-cCCCEEEecCCCCHHHHh---cCcEE-EEEcCCHHHHHHHHHHHHHHcCCcEEeCCc-c
Confidence 44431 1122232322 232111111222222221 34433 345778888899999999877766666664 4
Q ss_pred H-HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcccCchhHHH---HH
Q 012349 280 H-EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWY---GQ 355 (465)
Q Consensus 280 v-e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~---G~ 355 (465)
. ...|.+-|.+. .....++.|...++++.|.+++++. |.+... ..+++.+ +.
T Consensus 164 ~g~~~Kl~~N~l~------------------~~~~~a~~Ea~~la~~~Gld~~~~~-----~~l~~~-~~~s~~~~~~~~ 219 (292)
T PRK15059 164 DGQTCKVANQIIV------------------ALNIEAVSEALLFASKAGADPVRVR-----QALMGG-FASSRILEVHGE 219 (292)
T ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHHH-----HHHHcC-cccCHHHHhhch
Confidence 3 22333334321 1123568899999999999988764 322221 1112211 11
Q ss_pred HHhcCCChhhHhHhhcCCccc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 356 ELAKGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 356 ~l~~g~~~~~~~~~~~~~~~v-EG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+.++. +...-.+ -..+..+.+.+++++.|+ + +|+...+.+++.
T Consensus 220 ~~~~~~--------~~~~f~l~~~~KDl~l~~~~a~~~g~--------------~-~p~~~~~~~~~~ 264 (292)
T PRK15059 220 RMIKRT--------FNPGFKIALHQKDLNLALQSAKALAL--------------N-LPNTATCQELFN 264 (292)
T ss_pred hhhcCC--------CCCCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 221111 0000012 234556678899999994 6 799888877763
No 48
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.32 E-value=1.3e-10 Score=124.04 Aligned_cols=219 Identities=15% Similarity=0.084 Sum_probs=139.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|++|..+|..||++ | .+++|+.++.++++++.+|. ++ .+.+-+++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~-g---~g~~V~gvD~~~~~v~~l~~---------g~--------~~~~e~gl----- 54 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK-C---PDIEVVVVDISVPRIDAWNS---------DQ--------LPIYEPGL----- 54 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-C---CCCeEEEEECCHHHHHHHHc---------CC--------CccCCCCH-----
Confidence 58999999999999999999987 5 12679999999998887443 22 11222222
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--cc-------------hHHHHHHHHHHhhhcc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--ST-------------ETKEVFEEISRYWKER 187 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp--s~-------------~l~~vl~~l~~~l~~~ 187 (465)
+|++.++. ..++.+|+|..+++.+||++|+||| .. ++.+++++|.+++++
T Consensus 55 ------~ell~~~~--------~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~- 119 (473)
T PLN02353 55 ------DEVVKQCR--------GKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS- 119 (473)
T ss_pred ------HHHHHHhh--------cCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-
Confidence 13333211 0247899999888999999999985 32 688999999999876
Q ss_pred CCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhcc----CceEEEEeC-Ch----hHHH
Q 012349 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICG-AE----KWRK 258 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g----~~t~~~~~~-~~----~~~~ 258 (465)
+++|| ...-+.+. +...+...+.+.. ....+.+.+.|.+..+...- .+..+++++ ++ +..+
T Consensus 120 --~~lVv-~~STvp~G-----tt~~~~~~l~~~~--~g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~ 189 (473)
T PLN02353 120 --DKIVV-EKSTVPVK-----TAEAIEKILTHNS--KGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ 189 (473)
T ss_pred --CcEEE-EeCCCCCC-----hHHHHHHHHHhhC--CCCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence 55443 33234443 2222223333321 11346788999998865421 133445554 22 2467
Q ss_pred HHHHHHcCCC-CeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCc
Q 012349 259 PLAKFLRRPH-FTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEP 330 (465)
Q Consensus 259 ~l~~ll~~~g-~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~ 330 (465)
.++++++... -..+...++...|+.|.+-|.+ ++. -...++|+..+|+++|++.
T Consensus 190 ~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~-----------------ra~-~Iaf~NEla~lce~~giD~ 244 (473)
T PLN02353 190 ALKDVYAHWVPEERIITTNLWSAELSKLAANAF-----------------LAQ-RISSVNAMSALCEATGADV 244 (473)
T ss_pred HHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHH-----------------HHH-HHHHHHHHHHHHHHhCCCH
Confidence 7777876432 1345678999999998877742 211 1245678888888887743
No 49
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.31 E-value=7.8e-11 Score=117.60 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=119.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcc-cccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRC-AYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~-~~l~~~~~~l 121 (465)
++||+|||+|.||..+|..++.+ | ++|++|+++++.+++... .+++.- .+..+.. .......
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~-g-----~~V~~~d~~~~~~~~~~~-----~i~~~l---~~~~~~g~~~~~~~~--- 65 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA-G-----YDVVMVDISDAAVDRGLA-----TITKSL---DRLVKKGKMTEADKE--- 65 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC-C-----CceEEEeCCHHHHHHHHH-----HHHHHH---HHHHHcCCCCHHHHH---
Confidence 46899999999999999999998 7 899999999887653211 111110 0000000 0000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchH--HHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET--KEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l--~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
....++++++|.++ +++||+||+|+|.+.- .++++++.+++++ +++++|.+.|
T Consensus 66 ---------------------~~~~~l~~~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~---~~il~s~ts~ 120 (282)
T PRK05808 66 ---------------------AALARITGTTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKP---EAILATNTSS 120 (282)
T ss_pred ---------------------HHHhCeEEeCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00125677888764 7999999999997543 7999999999887 7888899988
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
+... .+.+.++.+ .+ .+...|+.+..+..+. .++. ..+++..+.+.++|+..|..+....|.
T Consensus 121 ~~~~------------~la~~~~~~-~r-~ig~h~~~P~~~~~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~ 184 (282)
T PRK05808 121 LSIT------------ELAAATKRP-DK-VIGMHFFNPVPVMKLV--EIIRGLATSDATHEAVEALAKKIGKTPVEVKNA 184 (282)
T ss_pred CCHH------------HHHHhhCCC-cc-eEEeeccCCcccCccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc
Confidence 7664 355666543 23 4566777766555442 2222 236678899999999999887776776
Q ss_pred HHH
Q 012349 278 VTH 280 (465)
Q Consensus 278 ~gv 280 (465)
-|-
T Consensus 185 ~g~ 187 (282)
T PRK05808 185 PGF 187 (282)
T ss_pred cCh
Confidence 554
No 50
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.31 E-value=7.4e-11 Score=118.96 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=124.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||.|.||..+|..|.++ | ++|++|+|+++.++.+ .+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~---------~~~----------------------- 42 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED-G-----HEVVGYDVNQEAVDVA---------GKL----------------------- 42 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHH---------HHC-----------------------
Confidence 6899999999999999999998 7 8999999997654421 100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
....+.+++++++. +|+||+++|.+ .++++++.+.+.+++ ++++|.++.+
T Consensus 43 -----------------------g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~---g~ivid~st~ 96 (299)
T PRK12490 43 -----------------------GITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSP---GDIVVDGGNS 96 (299)
T ss_pred -----------------------CCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCC---CCEEEECCCC
Confidence 12344566676655 69999999988 999999998887765 6778877644
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCC---eEEecCC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNGD 276 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~---~v~~s~D 276 (465)
-... ...+.+.+.+ .|.......|..||.-+. .|. + ++++++++..++++.+|+.-+- ++++..+
T Consensus 97 ~~~~------~~~~~~~~~~-~g~~~vdapV~G~~~~a~---~g~-~-~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~ 164 (299)
T PRK12490 97 RYKD------DLRRAEELAE-RGIHYVDCGTSGGVWGLR---NGY-C-LMVGGDKEIYDRLEPVFKALAPEGPGYVHAGP 164 (299)
T ss_pred Cchh------HHHHHHHHHH-cCCeEEeCCCCCCHHHHh---cCC-e-EEecCCHHHHHHHHHHHHHhcCcCCcEEEECC
Confidence 3222 1112222222 121111112333332222 443 3 5678888888888888887665 5666666
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhC--CCcchhc
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLA--EEPEKLA 334 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G--~~~~t~~ 334 (465)
+-.-...|.+-|. .......++.|...++++.| .+++.+.
T Consensus 165 ~g~a~~~Kl~~n~------------------~~~~~~~~~aEa~~l~~~~g~~ld~~~~~ 206 (299)
T PRK12490 165 VGSGHFLKMVHNG------------------IEYGMMQAYAEGLELLDKSDFDFDVEDVA 206 (299)
T ss_pred cCHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcccCCCHHHHH
Confidence 4223333333332 11233467889999999988 6766553
No 51
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.30 E-value=1.5e-10 Score=116.03 Aligned_cols=183 Identities=21% Similarity=0.252 Sum_probs=111.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||+++|..|+.+ | ++|++|+++++.+++++.. +.+. +..+.+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-----~~~~---------~~~~~~~~----- 57 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH-G-----FDVTIYDISDEALEKAKER-----IAKL---------ADRYVRDL----- 57 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-----HHHH---------HHHHHHcC-----
Confidence 47999999999999999999998 7 8999999998876654321 1100 01111110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+..++-.. ..+.++..++|++++++++|+||+|+|++ ..+++++++.+++++ ++++++.+.++
T Consensus 58 --~~~~~~~~~---------~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~---~~ii~sntSt~ 123 (287)
T PRK08293 58 --EATKEAPAE---------AALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPE---KTIFATNSSTL 123 (287)
T ss_pred --CCChhhhHH---------HHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CCEEEECcccC
Confidence 000000000 00125778899998899999999999976 688899999998876 67666655444
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEe-cCCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD-NGDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~-s~Di 277 (465)
. +++ +.+.+..+ .++.. .-| ...........++. ..+++..+.+.++++..|..... ..|.
T Consensus 124 ~-----------~~~-~~~~~~~~-~r~vg-~Hf--~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~ 187 (287)
T PRK08293 124 L-----------PSQ-FAEATGRP-EKFLA-LHF--ANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQ 187 (287)
T ss_pred C-----------HHH-HHhhcCCc-ccEEE-EcC--CCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 3 334 33444432 23221 112 11122222223332 23567788999999998877544 4566
Q ss_pred HHH
Q 012349 278 VTH 280 (465)
Q Consensus 278 ~gv 280 (465)
-|-
T Consensus 188 pgf 190 (287)
T PRK08293 188 PGY 190 (287)
T ss_pred CCH
Confidence 554
No 52
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.30 E-value=4.6e-10 Score=114.38 Aligned_cols=200 Identities=19% Similarity=0.217 Sum_probs=133.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
++|+|||.|+||.++|..|... | ++|.++.++...... . ...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s-G-----~~Vvv~~r~~~~s~~---------~----------------A~~------- 59 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS-G-----VDVVVGLREGSKSWK---------K----------------AEA------- 59 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEECCchhhHH---------H----------------HHH-------
Confidence 6899999999999999999988 7 889888776432111 0 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHH-HHHHHhhhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
..+.. .+.+++++.||+|+++||.+...+++ +++.+.+++ ++++ +++.|+..
T Consensus 60 ----------------------~G~~~-~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~---g~iL-~~a~G~~i 112 (330)
T PRK05479 60 ----------------------DGFEV-LTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKE---GAAL-AFAHGFNI 112 (330)
T ss_pred ----------------------CCCee-CCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCC---CCEE-EECCCCCh
Confidence 01223 36778899999999999999889998 779988876 5655 88889876
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhh-------hhccCceEEEEeCC--hhHHHHHHHHHcCCC-----
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-------IYNKEYANARICGA--EKWRKPLAKFLRRPH----- 268 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~e-------v~~g~~t~~~~~~~--~~~~~~l~~ll~~~g----- 268 (465)
. ..+...+. ..+ +++.+|+.+.. ++.|.++.+.+..+ .+..+.+..+|+..|
T Consensus 113 ~------------~~~~~p~~-~~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g 178 (330)
T PRK05479 113 H------------FGQIVPPA-DVD-VIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAG 178 (330)
T ss_pred h------------hceeccCC-CCc-EEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccc
Confidence 5 22333332 122 56778999888 77777665534333 455566666666544
Q ss_pred -----CeEEecCChHHH--HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHh
Q 012349 269 -----FTVWDNGDLVTH--EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLL 326 (465)
Q Consensus 269 -----~~v~~s~Di~gv--e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~ 326 (465)
|+-...+|+.|- -+||.+--.+..+...+...+|. +. .+ .-.++.|+..+...+
T Consensus 179 ~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~-pe--~A-y~e~~~e~k~i~dl~ 239 (330)
T PRK05479 179 VIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQ-PE--MA-YFECLHELKLIVDLI 239 (330)
T ss_pred eeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCC-HH--HH-HHHHHHHHHHHHHHH
Confidence 333445778774 34776666677776666666663 32 13 336788887766554
No 53
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.29 E-value=1.4e-10 Score=119.19 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=111.8
Q ss_pred ceEEEECccH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhh
Q 012349 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (465)
Q Consensus 44 mkIaIIGaGa--------------------mGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~ 103 (465)
|||+|.|+|+ =|+++|..|+++ | |+|++|+|+++..+. ++ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a-G-----~~V~v~Dr~~~~l~~---~~----~~----- 62 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA-G-----HDVVLAEPNRSILSE---EL----WK----- 62 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC-C-----CeEEEEECCHHHhhH---HH----HH-----
Confidence 6888888886 388899999998 7 999999998764321 00 00
Q ss_pred HHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-HHHHHHHHHH
Q 012349 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISR 182 (465)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-l~~vl~~l~~ 182 (465)
.+.. .++.+++|..++++++|+||+++|+.. ++++++.+.+
T Consensus 63 ---------~l~~-----------------------------~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~ 104 (342)
T PRK12557 63 ---------KVED-----------------------------AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILP 104 (342)
T ss_pred ---------HHHH-----------------------------CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHh
Confidence 0100 135566788888899999999999988 9999999999
Q ss_pred hhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCC--------CccEEEEeCCchhhhhhccCceEEEEeCCh
Q 012349 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--------IENILYLGGPNIASEIYNKEYANARICGAE 254 (465)
Q Consensus 183 ~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~--------~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~ 254 (465)
.+++ +++|++++++- +. ..++.+.+.++.+ .++..+..+|++...+..+.++......++
T Consensus 105 ~L~~---g~IVId~ST~~-~~--------~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~ 172 (342)
T PRK12557 105 HLPE---NAVICNTCTVS-PV--------VLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELATE 172 (342)
T ss_pred hCCC---CCEEEEecCCC-HH--------HHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCCCH
Confidence 8876 67888777553 22 1224454444311 123334455666665555444323334567
Q ss_pred hHHHHHHHHHcCCCCeEEecC
Q 012349 255 KWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 255 ~~~~~l~~ll~~~g~~v~~s~ 275 (465)
+..++++.+|+..|.++++.+
T Consensus 173 e~~e~v~~LL~a~G~~v~~~~ 193 (342)
T PRK12557 173 EQIEKCVELAESIGKEPYVVP 193 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEeC
Confidence 778999999999999887766
No 54
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.29 E-value=3.2e-11 Score=128.61 Aligned_cols=158 Identities=13% Similarity=0.083 Sum_probs=106.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+++|+|||.|.||++||..|+++ | ++|++|+|+++.++.++. ... + ++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~-G-----~~V~v~dr~~~~~~~l~~--------~~~--------~----~g------ 48 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR-G-----FKISVYNRTYEKTEEFVK--------KAK--------E----GN------ 48 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH--------hhh--------h----cC------
Confidence 36899999999999999999999 8 999999999987664211 100 0 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEec-CcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGL-PSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~---~aDiVIlaV-ps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
..+..++++++++. ++|+||+++ |++.++++++++.+++.+ +.+||.++|
T Consensus 49 -----------------------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~---g~iIID~gn 102 (470)
T PTZ00142 49 -----------------------TRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEK---GDIIIDGGN 102 (470)
T ss_pred -----------------------CcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCC---CCEEEECCC
Confidence 02345677888775 489888886 467899999999999887 789999999
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCe
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~ 270 (465)
+....+ ..+..+ +.+ .|.......|..||.-|. .| + .++++++++..++++.+|+..+-+
T Consensus 103 ~~~~dt-----~~r~~~-l~~-~Gi~fldapVSGG~~gA~---~G-~-~lm~GG~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 103 EWYLNT-----ERRIKR-CEE-KGILYLGMGVSGGEEGAR---YG-P-SLMPGGNKEAYDHVKDILEKCSAK 162 (470)
T ss_pred CCHHHH-----HHHHHH-HHH-cCCeEEcCCCCCCHHHHh---cC-C-EEEEeCCHHHHHHHHHHHHHHhhh
Confidence 986652 122212 221 122111123444444443 34 3 467888888888898888875544
No 55
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=99.27 E-value=1.2e-11 Score=111.61 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=83.3
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCCc
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT 125 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~ 125 (465)
|+|+|+|++|+.+|..|++. | ++|++++|++ .++.++.+++ .+.... ++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g-----~~V~l~~r~~-~~~~~~~~g~-------------------~~~~~~---~~~~ 51 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-G-----HDVTLVSRSP-RLEAIKEQGL-------------------TITGPD---GDET 51 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-T-----CEEEEEESHH-HHHHHHHHCE-------------------EEEETT---EEEE
T ss_pred CEEECcCHHHHHHHHHHHHC-C-----CceEEEEccc-cHHhhhheeE-------------------EEEecc---ccee
Confidence 78999999999999999998 7 9999999998 6665333221 111100 0000
Q ss_pred ccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccccc
Q 012349 126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205 (465)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~ 205 (465)
+ .......+..+...++|+||+|||+.+++++++.+++++.+ ++.|++++||+...
T Consensus 52 ~-------------------~~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~~~~---~t~iv~~qNG~g~~-- 107 (151)
T PF02558_consen 52 V-------------------QPPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLKPYLDP---NTTIVSLQNGMGNE-- 107 (151)
T ss_dssp E-------------------EEEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTGEET---TEEEEEESSSSSHH--
T ss_pred c-------------------ccccccCcchhccCCCcEEEEEecccchHHHHHHHhhccCC---CcEEEEEeCCCCcH--
Confidence 0 01122333323467899999999999999999999999987 67999999999876
Q ss_pred ccccCCCHHHHHHhHhCC
Q 012349 206 AVPRIITPTQMINRATGV 223 (465)
Q Consensus 206 ~~~~~~~~se~I~e~lg~ 223 (465)
+.+.+.++.
T Consensus 108 ---------~~l~~~~~~ 116 (151)
T PF02558_consen 108 ---------EVLAEYFPR 116 (151)
T ss_dssp ---------HHHHCHSTG
T ss_pred ---------HHHHHHcCC
Confidence 678877753
No 56
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.25 E-value=5.2e-10 Score=113.26 Aligned_cols=209 Identities=16% Similarity=0.135 Sum_probs=128.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||+++|..|+++ | ++|++|+++++.++.+... ++... .+.. +..+++...
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~-G-----~~V~v~d~~~~~~~~~~~~-----~~~~l---~~l~-~~g~~~~~~---- 62 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA-G-----HEVRLWDADPAAAAAAPAY-----IAGRL---EDLA-AFDLLDGEA---- 62 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC-C-----CeeEEEeCCHHHHHHHHHH-----HHHHH---HHHH-HcCCCchhh----
Confidence 36899999999999999999999 8 8999999998766643211 11000 0000 000111000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+.++.+++|+.++++++|+||+|+|+. ....++.++.++.++ +.++.|.++++
T Consensus 63 ---~---------------~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~---~~ii~ssts~~ 121 (308)
T PRK06129 63 ---P---------------DAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPP---HAILASSTSAL 121 (308)
T ss_pred ---H---------------HHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCC---cceEEEeCCCC
Confidence 0 000124678899988899999999999986 577788888877665 56776777665
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEec-CCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~s-~Di 277 (465)
... .+.+.+..+. ..+...|-.+.... ....++. .++++..+.++.+|+..|.++... .|.
T Consensus 122 ~~~------------~la~~~~~~~--~~~~~hp~~p~~~~--~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~ 185 (308)
T PRK06129 122 LAS------------AFTEHLAGRE--RCLVAHPINPPYLI--PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREI 185 (308)
T ss_pred CHH------------HHHHhcCCcc--cEEEEecCCCcccC--ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 432 3555554321 12333333321111 1122222 256778899999999999876655 465
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 278 VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 278 ~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
-|. +-| + ++...++|+..+++..|.+++.+
T Consensus 186 ~G~-----i~n-----------------r----l~~a~~~EA~~l~~~g~~~~~~i 215 (308)
T PRK06129 186 DGF-----VLN-----------------R----LQGALLREAFRLVADGVASVDDI 215 (308)
T ss_pred ccH-----HHH-----------------H----HHHHHHHHHHHHHHcCCCCHHHH
Confidence 543 112 1 22356778888888877777655
No 57
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.25 E-value=6.9e-11 Score=111.36 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=97.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||.|.+|..+|..||++ | |+|+.++.+++.++. ++++. .+.+.+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G-----~~V~g~D~~~~~v~~---------l~~g~--------~p~~E~~l~----- 52 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-G-----HQVIGVDIDEEKVEA---------LNNGE--------LPIYEPGLD----- 52 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-T-----SEEEEE-S-HHHHHH---------HHTTS--------SSS-CTTHH-----
T ss_pred CEEEEECCCcchHHHHHHHHhC-C-----CEEEEEeCChHHHHH---------Hhhcc--------ccccccchh-----
Confidence 8999999999999999999999 8 999999999987776 34332 233333331
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCCCEE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~~iv 193 (465)
|++.+.... .++.+++|.++++.++|++|+|||.. ++.++++.|.+++.+ +++
T Consensus 53 ------~ll~~~~~~-------~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~---~~l- 115 (185)
T PF03721_consen 53 ------ELLKENVSA-------GRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP---GDL- 115 (185)
T ss_dssp ------HHHHHHHHT-------TSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS---CEE-
T ss_pred ------hhhcccccc-------ccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh---cce-
Confidence 334332111 26889999999999999999999853 588999999999886 444
Q ss_pred EEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc----cCceEEEEeCChhHHH-HHHHH
Q 012349 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRK-PLAKF 263 (465)
Q Consensus 194 Is~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~~~~~-~l~~l 263 (465)
|.+-.-+.+.+ +-.....++++.-+.. ..+.+.+.|.+..+... ..+..++.+.+++..+ .++++
T Consensus 116 vV~~STvppGt----t~~~~~~ile~~~~~~-~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 116 VVIESTVPPGT----TEELLKPILEKRSGKK-EDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp EEESSSSSTTH----HHHHHHHHHHHHCCTT-TCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred EEEccEEEEee----ehHhhhhhhhhhcccc-cCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 44544566552 1112333444433321 34678888988775432 1244455665554443 55543
No 58
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.25 E-value=3.3e-10 Score=113.62 Aligned_cols=178 Identities=15% Similarity=0.186 Sum_probs=111.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||+++|..|+.+ | ++|++|+++++.++++.. .+.+.. .++... ..++...
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~-----~i~~~~---~~~~~~-g~~~~~~---- 64 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-G-----YDVLLNDVSADRLEAGLA-----TINGNL---ARQVAK-GKISEEA---- 64 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH-----HHHHHH---HHHHHc-CCCCHHH----
Confidence 47899999999999999999999 7 899999999887664211 111100 000000 0011000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. . ..+.+++++++++ ++.++|+||+|||++ ..+.+++++.+++++ +++++|.+.++
T Consensus 65 ---~------~---------~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~---~~ii~s~ts~~ 122 (292)
T PRK07530 65 ---R------A---------AALARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKP---EAILATNTSSI 122 (292)
T ss_pred ---H------H---------HHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 0 0 0012467778885 478999999999985 577888999998887 68888888777
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccE-EE-EeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENI-LY-LGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i-~v-lsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
... + +.+.+..+ .++ .+ ..-|.... .+ ..++. ..+++..+.+..+|+..|..+.+..|
T Consensus 123 ~~s-----------~-la~~~~~~-~r~~g~h~~~p~~~~---~~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d 184 (292)
T PRK07530 123 SIT-----------R-LASATDRP-ERFIGIHFMNPVPVM---KL--VELIRGIATDEATFEAAKEFVTKLGKTITVAED 184 (292)
T ss_pred CHH-----------H-HHhhcCCc-ccEEEeeccCCcccC---ce--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 543 2 44444322 121 11 11122211 11 12222 34678889999999999988877777
Q ss_pred hHH
Q 012349 277 LVT 279 (465)
Q Consensus 277 i~g 279 (465)
.-|
T Consensus 185 ~pg 187 (292)
T PRK07530 185 FPA 187 (292)
T ss_pred cCC
Confidence 653
No 59
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.25 E-value=4.7e-10 Score=112.39 Aligned_cols=180 Identities=18% Similarity=0.152 Sum_probs=112.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|.||..+|..|+++ | ++|++|+++++.+++++.. +........ +. ..+....
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~~-~~~~~~~~~-------~~-g~~~~~~----- 61 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-G-----FQTTLVDIKQEQLESAQQE-IASIFEQGV-------AR-GKLTEAA----- 61 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHHHHH-HHHHHHHHH-------Hc-CCCCHHH-----
Confidence 5899999999999999999998 7 8999999999877764332 111111110 00 0000000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. +..+.+++.++++++++++||+||+|+|.+. ...++.++.+++++ ++++++.+.++.
T Consensus 62 --~---------------~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~---~~il~~~tSt~~ 121 (288)
T PRK09260 62 --R---------------QAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPA---ECYIATNTSTMS 121 (288)
T ss_pred --H---------------HHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCCC
Confidence 0 0001246778899888999999999999875 56778888888776 666666665665
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEE-EEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~-vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
+. + +.+....+..-+. ....|. ..+....++.+ .+++..++++.+|...+..+....|.-
T Consensus 122 ~~-----------~-l~~~~~~~~r~~g~h~~~Pv-----~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~ 184 (288)
T PRK09260 122 PT-----------E-IASFTKRPERVIAMHFFNPV-----HKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFP 184 (288)
T ss_pred HH-----------H-HHhhcCCcccEEEEecCCCc-----ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc
Confidence 53 2 4444432211111 111232 22233332222 267788999999999998877777865
Q ss_pred HH
Q 012349 279 TH 280 (465)
Q Consensus 279 gv 280 (465)
|-
T Consensus 185 Gf 186 (288)
T PRK09260 185 GF 186 (288)
T ss_pred cH
Confidence 54
No 60
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.24 E-value=4.3e-10 Score=114.26 Aligned_cols=163 Identities=18% Similarity=0.170 Sum_probs=113.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~-~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+||+|||+|+||.++|..|.++ | ++|+++.++.. ..+. ...
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s-G-----~~Viv~~~~~~~~~~~--------------------------a~~------ 45 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS-G-----LNVIVGLRKGGASWKK--------------------------ATE------ 45 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-C-----CeEEEEECcChhhHHH--------------------------HHH------
Confidence 6899999999999999999988 7 77877665532 1111 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
..+.++ +..+++++||+|+++||++ +...+++++.+.+++ + .+||++.|+.
T Consensus 46 -----------------------~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~---g-~iVs~aaG~~ 97 (314)
T TIGR00465 46 -----------------------DGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKE---G-KTLGFSHGFN 97 (314)
T ss_pred -----------------------CCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhCCC---C-cEEEEeCCcc
Confidence 023333 4677889999999999999 777778889888875 4 4899999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhh-h------hccCceEEEEeC--ChhHHHHHHHHHcCCCCe--
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-I------YNKEYANARICG--AEKWRKPLAKFLRRPHFT-- 270 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~e-v------~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~-- 270 (465)
.. .++..++.. . -+++.+||.+.. + +.|.++.+.+.. +.+..+.+..+|+..|..
T Consensus 98 i~------------~~~~~~~~~-~-~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~~ 163 (314)
T TIGR00465 98 IH------------FVQIVPPKD-V-DVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGRA 163 (314)
T ss_pred Hh------------hccccCCCC-C-cEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 75 344555421 2 368999999998 4 788766543432 445667788888877755
Q ss_pred -----E---EecCChHHHH--HHHHH
Q 012349 271 -----V---WDNGDLVTHE--VMGGL 286 (465)
Q Consensus 271 -----v---~~s~Di~gve--~~gal 286 (465)
. ++.+|..+.. +||..
T Consensus 164 ~~~~t~f~~e~~edl~~~~t~l~Gs~ 189 (314)
T TIGR00465 164 GVLETTFKEETESDLFGEQAVLCGGL 189 (314)
T ss_pred ceeechhHhhhhHHhcCcchhHHhHH
Confidence 3 6667776643 45443
No 61
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.21 E-value=1.2e-09 Score=109.87 Aligned_cols=181 Identities=17% Similarity=0.185 Sum_probs=112.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||.+||..|+.+ | ++|++|+++++.+++... .+...+.+. .+....-....
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~~~-~~~~~~~~~-------~~~g~~~~~~~---- 65 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA-G-----MDVWLLDSDPAALSRGLD-SISSSLARL-------VKKGKMSQEEA---- 65 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHH-------HHcCCCCHHHH----
Confidence 46899999999999999999998 7 899999999876653211 111111100 00000000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--cchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--STETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp--s~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. ..+..+.++++.+ ++++||+||+|+| .+....++.++.+++++ +++++|.+.|+
T Consensus 66 ----------~---------~~~~~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~---~~il~s~tS~i 122 (295)
T PLN02545 66 ----------D---------ATLGRIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKP---SAILASNTSSI 122 (295)
T ss_pred ----------H---------HHHhceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 0 0001355666764 5799999999999 67788889999988876 67888888888
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
... .+++.++.+ .++.. ..|..+... +....++.+ .+++..+.++.+|+..|..+.+..|.-
T Consensus 123 ~~~------------~l~~~~~~~-~r~~g-~h~~~pp~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~ 186 (295)
T PLN02545 123 SIT------------RLASATQRP-QQVIG-MHFMNPPPI--MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP 186 (295)
T ss_pred CHH------------HHHhhcCCC-cceEE-EeccCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 654 255555432 22211 122222222 222323222 366778999999999998888877765
Q ss_pred HH
Q 012349 279 TH 280 (465)
Q Consensus 279 gv 280 (465)
|-
T Consensus 187 g~ 188 (295)
T PLN02545 187 GF 188 (295)
T ss_pred cH
Confidence 53
No 62
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.20 E-value=2e-10 Score=107.63 Aligned_cols=173 Identities=21% Similarity=0.318 Sum_probs=104.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
||+|||+|.||..+|..++.+ | ++|++|+++++.+++... .+...+.... +. ..+.... ..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l~~~~-------~~-~~~~~~~---~~- 61 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G-----YEVTLYDRSPEALERARK-RIERLLDRLV-------RK-GRLSQEE---AD- 61 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T-----SEEEEE-SSHHHHHHHHH-HHHHHHHHHH-------HT-TTTTHHH---HH-
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHhhhh-HHHHHHhhhh-------hh-ccchhhh---hh-
Confidence 799999999999999999999 8 999999999987765322 1111111110 00 0111000 00
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
..+.++..++|++++. +||+||.|+|.. ..++++.+|..++++ ++++.|.+.++..
T Consensus 62 ------------------~~~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~---~~ilasnTSsl~i 119 (180)
T PF02737_consen 62 ------------------AALARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPP---DTILASNTSSLSI 119 (180)
T ss_dssp ------------------HHHHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-T---TSEEEE--SSS-H
T ss_pred ------------------hhhhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCC---CceEEecCCCCCH
Confidence 0012688999999876 999999999976 688899999999987 7999888888766
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
. + +.+.++.| .++..+ ..|-+.. ....++.+ .+++..+.+.+++...|.......|
T Consensus 120 ~-----------~-la~~~~~p-~R~ig~Hf~~P~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 120 S-----------E-LAAALSRP-ERFIGMHFFNPPHLM-----PLVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp H-----------H-HHTTSSTG-GGEEEEEE-SSTTT-------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred H-----------H-HHhccCcC-ceEEEEecccccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4 3 45555543 343222 2333221 12233333 2567788999999988887766555
No 63
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.18 E-value=7.2e-10 Score=118.66 Aligned_cols=208 Identities=17% Similarity=0.086 Sum_probs=130.6
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
....+++|+|||.|.||+.||..|+++ | ++|++|+|+++.++.+. +... ..+.
T Consensus 2 ~~~~~~~IG~IGLG~MG~~mA~nL~~~-G-----~~V~V~NRt~~k~~~l~--------~~~~------------~~Ga- 54 (493)
T PLN02350 2 ASAALSRIGLAGLAVMGQNLALNIAEK-G-----FPISVYNRTTSKVDETV--------ERAK------------KEGN- 54 (493)
T ss_pred CCCCCCCEEEEeeHHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHH--------Hhhh------------hcCC-
Confidence 456778999999999999999999999 8 99999999987665421 1000 0000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEE
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVII 194 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivI 194 (465)
..+....+++++++. +|+||++||.. .++++++.+.+.+.+ +.++|
T Consensus 55 ---------------------------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~---G~iiI 104 (493)
T PLN02350 55 ---------------------------LPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEP---GDCII 104 (493)
T ss_pred ---------------------------cccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCC---CCEEE
Confidence 012344667777665 99999999965 788888888888876 67888
Q ss_pred EeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCC-----
Q 012349 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF----- 269 (465)
Q Consensus 195 s~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~----- 269 (465)
.+++.-...+ ....+.+++ -|.......|..||.-|. .| + .++++++++..++++.+|+..+-
T Consensus 105 D~sT~~~~~t------~~~~~~l~~-~Gi~fldapVSGG~~gA~---~G-~-~im~GG~~~a~~~v~pvL~~ia~k~~~~ 172 (493)
T PLN02350 105 DGGNEWYENT------ERRIKEAAE-KGLLYLGMGVSGGEEGAR---NG-P-SLMPGGSFEAYKNIEDILEKVAAQVDDG 172 (493)
T ss_pred ECCCCCHHHH------HHHHHHHHH-cCCeEEeCCCcCCHHHhc---CC-C-eEEecCCHHHHHHHHHHHHHHhhhcCCC
Confidence 8876543331 112222222 232111123444554333 34 3 46788888888999999886553
Q ss_pred -eEEecCChHHH-HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHH-hCCCcchhc
Q 012349 270 -TVWDNGDLVTH-EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLA 334 (465)
Q Consensus 270 -~v~~s~Di~gv-e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a-~G~~~~t~~ 334 (465)
.+.+..+. |. ...+.+-|. +. ..+..++.|...+++. +|.+++.+.
T Consensus 173 ~~v~~vG~~-GaG~~vKlv~N~----------i~--------~~~m~~iaEA~~l~~~~~Gld~~~l~ 221 (493)
T PLN02350 173 PCVTYIGPG-GAGNFVKMVHNG----------IE--------YGDMQLISEAYDVLKSVGGLSNEELA 221 (493)
T ss_pred CcEEEeCCc-CHHHHHHHHHHH----------HH--------HHHHHHHHHHHHHHHhhCCCCHHHHH
Confidence 24444443 32 222322231 11 2345778899999887 588877653
No 64
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.17 E-value=1.2e-09 Score=107.22 Aligned_cols=148 Identities=18% Similarity=0.112 Sum_probs=106.5
Q ss_pred eEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 148 i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.++++..+++.++|+||+|||++.++++++++.+.+.+ +++|||+++|+..+ .+++.++.. .
T Consensus 31 ~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~---~~~ivS~~agi~~~------------~l~~~~~~~--~ 93 (245)
T TIGR00112 31 IVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGK---DKLLISIAAGVTLE------------KLSQLLGGT--R 93 (245)
T ss_pred cEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccC---CCEEEEecCCCCHH------------HHHHHcCCC--C
Confidence 345567777788999999999999999999999987654 57999999999875 467778632 2
Q ss_pred EEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCc
Q 012349 228 ILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESA 305 (465)
Q Consensus 228 i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~ 305 (465)
..++.+||.+..+.+|.. .+..+ .+++..+.++++|+..|..+++.++....-. ..+| .| +
T Consensus 94 ~ivR~mPn~~~~~~~g~t-~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~t---------alsg------sg-P 156 (245)
T TIGR00112 94 RVVRVMPNTPAKVGAGVT-AIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVT---------ALSG------SG-P 156 (245)
T ss_pred eEEEECCChHHHHhCCeE-EEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHH---------hhcc------Cc-H
Confidence 368999999999988753 23333 2456778999999999988888876543211 1111 22 2
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 306 TSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 306 n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
+++...+..+..-+...|.+++..
T Consensus 157 ----A~~~~~~~al~~~~v~~Gl~~~~A 180 (245)
T TIGR00112 157 ----AYVFLFIEALADAGVKQGLPRELA 180 (245)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 455556666667777788776543
No 65
>PLN02858 fructose-bisphosphate aldolase
Probab=99.17 E-value=6.5e-10 Score=131.66 Aligned_cols=206 Identities=14% Similarity=0.078 Sum_probs=130.5
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 38 ~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
|....+++|+|||.|+||.+||..|+++ | ++|.+|+|+++.++.+ ...
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l---------~~~----------------- 366 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKS-N-----FSVCGYDVYKPTLVRF---------ENA----------------- 366 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHH---------HHc-----------------
Confidence 3334568999999999999999999998 7 8999999988654421 000
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH---HHHHhhhccCCCCEE
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERITVPVI 193 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~---~l~~~l~~~~~~~iv 193 (465)
......++.++++++|+||+||| ++.+++++. .+.+.+.+ ++++
T Consensus 367 -----------------------------Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~---g~iv 414 (1378)
T PLN02858 367 -----------------------------GGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPA---GASI 414 (1378)
T ss_pred -----------------------------CCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCC---CCEE
Confidence 11234677788899999999999 778888873 34444444 5667
Q ss_pred EEeeccccccccccccCCCHHHHHHhH-hCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEE
Q 012349 194 ISLAKGVEAELEAVPRIITPTQMINRA-TGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (465)
Q Consensus 194 Is~~kGi~~~~~~~~~~~~~se~I~e~-lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (465)
|.++ .+.+++ ...+.+.+.+. .|.......+..||.-+. .|..+ ++++++++..++++.+|+..+-+++
T Consensus 415 Vd~S-TvsP~~-----~~~la~~l~~~g~g~~~lDAPVsGg~~~A~---~G~L~-imvgG~~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 415 VLSS-TVSPGF-----VIQLERRLENEGRDIKLVDAPVSGGVKRAA---MGTLT-IMASGTDEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred EECC-CCCHHH-----HHHHHHHHHhhCCCcEEEEccCCCChhhhh---cCCce-EEEECCHHHHHHHHHHHHHHhCcEE
Confidence 6555 344431 11222223221 111101112344444333 45443 4567777888889999988776766
Q ss_pred e-cCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 273 D-NGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 273 ~-s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
+ ..++-.-...|++-|.+. .....++.|+..++++.|.+++++..
T Consensus 485 ~~~g~~G~a~~~KL~nN~l~------------------~~~~aa~aEal~la~k~Gld~~~l~e 530 (1378)
T PLN02858 485 VIKGGCGAGSGVKMVNQLLA------------------GVHIASAAEAMAFGARLGLNTRKLFD 530 (1378)
T ss_pred EeCCCCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 5 566543444555555321 22245678999999999999887653
No 66
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.16 E-value=3.1e-09 Score=112.78 Aligned_cols=211 Identities=20% Similarity=0.288 Sum_probs=126.5
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+||| +|.||+++|..|.++ | ++|++|+|+++...+. ..+ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~-G-----~~V~v~~r~~~~~~~~--------a~~--------------~-------- 44 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK-G-----FEVIVTGRDPKKGKEV--------AKE--------------L-------- 44 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC-C-----CEEEEEECChHHHHHH--------HHH--------------c--------
Confidence 6899998 799999999999988 7 8999999987543210 000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
++.++++..+++.++|+||+|||.+.+.++++++.+++++ +++++.++. +-.
T Consensus 45 ------------------------gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~---~~iViDvsS-vK~ 96 (437)
T PRK08655 45 ------------------------GVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKE---GSLLMDVTS-VKE 96 (437)
T ss_pred ------------------------CCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCC---CCEEEEccc-ccH
Confidence 2334567777889999999999999999999999998876 678877763 111
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEE---EEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~---vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
.+.+.+.+.++.. ..+. -+.||+.+. ..+....++.. .+++..+.++++|+..|.+++..+.-
T Consensus 97 ---------~~~~~l~~~~~~~-~~~V~~HPmaGp~~~~--~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e 164 (437)
T PRK08655 97 ---------RPVEAMEEYAPEG-VEILPTHPMFGPRTPS--LKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPE 164 (437)
T ss_pred ---------HHHHHHHHhcCCC-CEEEEcCCCCCCCCcc--cCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH
Confidence 1224555555421 1111 123565542 34443333322 24567899999999999998865433
Q ss_pred HHHH---HHHHHHHHHHHHHHhhh-cccCCCcchHHHHHHHHHHHHHHH-HHHhCCCcc
Q 012349 278 VTHE---VMGGLKNVYAIGAGMVA-ALTNESATSKSVYFAHCTSEMVFI-THLLAEEPE 331 (465)
Q Consensus 278 ~gve---~~galKNviAia~Gi~~-gl~~g~~n~~a~li~~~~~E~~~l-~~a~G~~~~ 331 (465)
.-.. +...+-.+++.+.+... .++....... .+..-+++.+..+ ++..+.+|+
T Consensus 165 ~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~-~~a~~~frd~~~~~tRIa~~~p~ 222 (437)
T PRK08655 165 EHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESR-KFASPIYELMIDIIGRILGQNPY 222 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-hhcChhhHHHHHHHHHHhcCCHH
Confidence 2211 22223333333333221 1222111111 3555666666543 455555553
No 67
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.14 E-value=1.2e-09 Score=108.79 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=100.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||+++|..|.++ |. ..+|+.|+|+++.++.. ... +
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~-g~---~~~v~~~d~~~~~~~~~---------~~~---------------g------- 45 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK-GL---ISKVYGYDHNELHLKKA---------LEL---------------G------- 45 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc-CC---CCEEEEEcCCHHHHHHH---------HHC---------------C-------
Confidence 6899999999999999999988 72 13688888887644321 000 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
-+....+.+++. ++|+||+|||++.+.++++++.+ +++ +++|+.+ |....
T Consensus 46 -----------------------~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~-l~~---~~iv~d~--gs~k~ 95 (275)
T PRK08507 46 -----------------------LVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD-IKE---NTTIIDL--GSTKA 95 (275)
T ss_pred -----------------------CCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc-cCC---CCEEEEC--ccchH
Confidence 011123455544 59999999999999999999988 776 6767653 22211
Q ss_pred ccccccCCCHHHHHHhHhCCC---CccEE--EEeCCchhh-hhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 204 LEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~---~~~i~--vlsGP~~a~-ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
.+.+.+.+..+.. .+|.+ ..+||..+. ....|....++.. .+++..+.++.+|+..|.++...+
T Consensus 96 --------~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~ 167 (275)
T PRK08507 96 --------KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD 167 (275)
T ss_pred --------HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 1223333321110 01110 112343332 2335554433322 245677899999999998887766
Q ss_pred ChHHHHHHHH
Q 012349 276 DLVTHEVMGG 285 (465)
Q Consensus 276 Di~gve~~ga 285 (465)
.-.--+..+.
T Consensus 168 ~~~hD~~~a~ 177 (275)
T PRK08507 168 AKEHDLHAAY 177 (275)
T ss_pred HHHHHHHHHH
Confidence 5433333333
No 68
>PLN02858 fructose-bisphosphate aldolase
Probab=99.13 E-value=1.4e-09 Score=129.01 Aligned_cols=290 Identities=12% Similarity=0.080 Sum_probs=169.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||++||.|.||..||..|.++ | ++|++|+|+++.++++ ..
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l--------------------------~~------ 45 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRS-G-----FKVQAFEISTPLMEKF--------------------------CE------ 45 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHH--------------------------HH------
Confidence 46899999999999999999998 8 9999999998755431 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH---HHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl---~~l~~~l~~~~~~~ivIs~~k 198 (465)
.+....+++.+++++||+||+++|. ..+++++ +.+.+.+.+ ++++|-++
T Consensus 46 -----------------------~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~---g~iivd~S- 98 (1378)
T PLN02858 46 -----------------------LGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQK---GAVILIRS- 98 (1378)
T ss_pred -----------------------cCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCC---cCEEEECC-
Confidence 0123456788889999999999995 4677776 345555554 56666555
Q ss_pred cccccccccccCCCHHHHHHhHhC--CCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe-cC
Q 012349 199 GVEAELEAVPRIITPTQMINRATG--VPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NG 275 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg--~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~-s~ 275 (465)
.+.+++ ...+.+.+.+ .| .......|..||.-|. .|..+ ++++++++..++++.+|+..+-+++. ..
T Consensus 99 Ti~p~~-----~~~la~~l~~-~g~~~~~lDaPVsGg~~~A~---~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~~G 168 (1378)
T PLN02858 99 TILPLQ-----LQKLEKKLTE-RKEQIFLVDAYVSKGMSDLL---NGKLM-IIASGRSDAITRAQPFLSAMCQKLYTFEG 168 (1378)
T ss_pred CCCHHH-----HHHHHHHHHh-cCCceEEEEccCcCCHHHHh---cCCeE-EEEcCCHHHHHHHHHHHHHhcCceEEecC
Confidence 344431 1122222222 12 1011123444454443 45543 46678888889999999988877764 35
Q ss_pred ChHHH-HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcccCchhHHH-
Q 012349 276 DLVTH-EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWY- 353 (465)
Q Consensus 276 Di~gv-e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~- 353 (465)
+. |. ...|++-|. .......++.|+..++++.|.+++.+.. .+.+.. +++..+
T Consensus 169 ~~-G~g~~~KL~nN~------------------l~~~~~~a~aEAl~la~~~Gld~~~l~~-----vl~~s~-g~s~~~~ 223 (1378)
T PLN02858 169 EI-GAGSKVKMVNEL------------------LEGIHLVASAEAMALGVRAGIHPWIIYD-----IISNAA-GSSWIFK 223 (1378)
T ss_pred CC-CHhHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHhcCC-ccCHHHH
Confidence 54 43 223333332 1123346788999999999999987753 222221 111111
Q ss_pred --HHHHhcCCChhhHhHhhcCCccc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc-------
Q 012349 354 --GQELAKGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM------- 423 (465)
Q Consensus 354 --G~~l~~g~~~~~~~~~~~~~~~v-EG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~------- 423 (465)
+..+.++.- ...-.+ -....+..+.+++++.|+ + +|+...+++++..
T Consensus 224 ~~~~~~~~~d~--------~~~F~l~l~~KDl~la~~~A~~~g~--------------~-lpl~~~a~~~~~~a~~~G~g 280 (1378)
T PLN02858 224 NHVPLLLKDDY--------IEGRFLNVLVQNLGIVLDMAKSLPF--------------P-LPLLAVAHQQLISGSSSMQG 280 (1378)
T ss_pred hhhhHhhcCCC--------CCCchhHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHHHHhcCCC
Confidence 122222210 000011 223455577888999984 6 7998888887733
Q ss_pred CCCHHHHHHHHHhcccCCCcccccccccceeeecccc
Q 012349 424 RESPIQAILEALRDETMNDPRDRIEIAQTHVFYRPSL 460 (465)
Q Consensus 424 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (465)
+.+ ..++.+++++.... +++-+-+.-.|.|+-
T Consensus 281 ~~D-~sav~~~~~~~~g~----~~~~~~~~~~~~~~~ 312 (1378)
T PLN02858 281 DDT-ATSLAKVWEKVFGV----NILEAANRELYKPED 312 (1378)
T ss_pred ccC-hHHHHHHHHHHcCC----CccccccccccChHH
Confidence 333 33444555543222 344444444555543
No 69
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.11 E-value=1.7e-09 Score=102.78 Aligned_cols=164 Identities=17% Similarity=0.172 Sum_probs=108.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||+|+|+|+|++|+++|..|++. | |+|++-.|+.+...+. .. .++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a-g-----~eV~igs~r~~~~~~a--------~a-------------~~l~------- 46 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA-G-----HEVIIGSSRGPKALAA--------AA-------------AALG------- 46 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC-C-----CeEEEecCCChhHHHH--------HH-------------Hhhc-------
Confidence 68999999999999999999999 7 9999997776532210 00 0110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
..++. ..+++|.+.+|+||++||-..+.++++++...+. +++||+++|.+..
T Consensus 47 -----------------------~~i~~-~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~----~KIvID~tnp~~~ 98 (211)
T COG2085 47 -----------------------PLITG-GSNEDAAALADVVVLAVPFEAIPDVLAELRDALG----GKIVIDATNPIEV 98 (211)
T ss_pred -----------------------ccccc-CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhC----CeEEEecCCCccc
Confidence 01222 3456788999999999999999999999998776 4799999998642
Q ss_pred ----cc-cccccCCCHHHHHHhHhCCCCccEEEEeCCch--hhhhhc---c-CceEEEEeCCh-hHHHHHHHHHcCCCCe
Q 012349 203 ----EL-EAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYN---K-EYANARICGAE-KWRKPLAKFLRRPHFT 270 (465)
Q Consensus 203 ----~~-~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~--a~ev~~---g-~~t~~~~~~~~-~~~~~l~~ll~~~g~~ 270 (465)
.. ...+.....++.++++++.. + ++..-|+ +..+.. . .-..+.+++|+ +..+.+.++.+..||+
T Consensus 99 ~~~~~~~~~~~~~~saae~va~~lp~a--k--VVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 99 NGEPGDLYLVPSEGSAAEIVAKLLPGA--K--VVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred cCCccccccCCCCCcHHHHHHHHCCCc--c--hhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 10 00123456789999988743 2 1222111 122221 1 11223345555 4567888888888887
Q ss_pred EE
Q 012349 271 VW 272 (465)
Q Consensus 271 v~ 272 (465)
..
T Consensus 175 ~l 176 (211)
T COG2085 175 PL 176 (211)
T ss_pred ee
Confidence 65
No 70
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=3.6e-09 Score=108.36 Aligned_cols=216 Identities=18% Similarity=0.216 Sum_probs=137.4
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+.++|+|||.|.+|..+|..+|++ | ++|.-+|.++..++. +|++. .|....
T Consensus 7 ~~~~~I~ViGLGYVGLPlA~~fA~~-G-----~~ViG~DIn~~~Vd~---------ln~G~----------~~i~e~--- 58 (436)
T COG0677 7 NMSATIGVIGLGYVGLPLAAAFASA-G-----FKVIGVDINQKKVDK---------LNRGE----------SYIEEP--- 58 (436)
T ss_pred CCceEEEEEccccccHHHHHHHHHc-C-----CceEeEeCCHHHHHH---------HhCCc----------ceeecC---
Confidence 3458999999999999999999999 8 899999999988886 44443 122110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCC
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITV 190 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~ 190 (465)
+ .++++.+.... ..+++|+|.++ +..||++|+|||.. ++.+..+.|++++++ +
T Consensus 59 --~----~~~~v~~~v~~-------g~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k---G 121 (436)
T COG0677 59 --D----LDEVVKEAVES-------GKLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKK---G 121 (436)
T ss_pred --c----HHHHHHHHHhc-------CCceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC---C
Confidence 0 11222221111 25899999987 56999999999974 688999999999987 5
Q ss_pred CEEEEeeccccccccccccCCCHHHHHHhH-hCCCC-ccEEEEeC-----Cchhh-hhhccCceEEEEeC-ChhHHHHHH
Q 012349 191 PVIISLAKGVEAELEAVPRIITPTQMINRA-TGVPI-ENILYLGG-----PNIAS-EIYNKEYANARICG-AEKWRKPLA 261 (465)
Q Consensus 191 ~ivIs~~kGi~~~~~~~~~~~~~se~I~e~-lg~~~-~~i~vlsG-----P~~a~-ev~~g~~t~~~~~~-~~~~~~~l~ 261 (465)
..|| +-..+.+. +...+..-+.+. .|... ..+.+-.. |+... |+. .. .- ++++ +++..+..+
T Consensus 122 ~LVI-lEST~~PG-----TTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~-~~-~k-VIgG~tp~~~e~a~ 192 (436)
T COG0677 122 DLVI-LESTTPPG-----TTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELV-NN-PK-VIGGVTPKCAELAA 192 (436)
T ss_pred CEEE-EecCCCCC-----cHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhh-cC-Cc-eeecCCHHHHHHHH
Confidence 6544 43344444 223233333333 22111 23333333 44332 111 11 11 3344 455567777
Q ss_pred HHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCC
Q 012349 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAE 328 (465)
Q Consensus 262 ~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~ 328 (465)
.++++---.+...+|....|+++.+-|++ -+-| ....+|+..+|+++|+
T Consensus 193 ~lY~~iv~~~~~vts~~tAEm~Kl~EN~f------------RdVN------IALaNElali~~~~GI 241 (436)
T COG0677 193 ALYKTIVEGVIPVTSARTAEMVKLTENTF------------RDVN------IALANELALICNAMGI 241 (436)
T ss_pred HHHHHheEEEEEcCChHHHHHHHHHhhhh------------hHHH------HHHHHHHHHHHHHhCC
Confidence 77776555577889999999999988852 1111 2346888899999887
No 71
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.11 E-value=6.5e-09 Score=105.92 Aligned_cols=176 Identities=17% Similarity=0.134 Sum_probs=112.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|||+|.||+.||..++.+ | ++|++|+++++..++.. +.+.... +++.+.. ..+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G-----~~V~l~D~~~~~~~~~~-----~~i~~~~---~~~~~~~-~~~~------ 65 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-G-----LDVVAWDPAPGAEAALR-----ANVANAW---PALERQG-LAPG------ 65 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHH-----HHHHHHH---HHHHHcC-CChh------
Confidence 46899999999999999999998 8 99999999987665421 1121110 0000000 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.....+..++++++++.+||+||.|+|.. ..++++.++.+++++ ++++.|.|.|+
T Consensus 66 --------------------~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~---~aIlaSnTS~l 122 (321)
T PRK07066 66 --------------------ASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKP---DAIIASSTSGL 122 (321)
T ss_pred --------------------hHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC---CeEEEECCCcc
Confidence 00125677889999999999999999976 477788999998887 67777777666
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEec-C
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-G 275 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s-~ 275 (465)
... + +.+.+..| .++.+. ..|-+.. ....++.+ .+++..+.+.+++...|...... .
T Consensus 123 ~~s-----------~-la~~~~~p-~R~~g~HffnP~~~~-----pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~k 184 (321)
T PRK07066 123 LPT-----------D-FYARATHP-ERCVVGHPFNPVYLL-----PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRK 184 (321)
T ss_pred CHH-----------H-HHHhcCCc-ccEEEEecCCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCC
Confidence 543 3 55555543 333222 2222211 11222222 35677888999999989766554 6
Q ss_pred ChHHH
Q 012349 276 DLVTH 280 (465)
Q Consensus 276 Di~gv 280 (465)
|+-|-
T Consensus 185 d~pGF 189 (321)
T PRK07066 185 EVPGF 189 (321)
T ss_pred CCccH
Confidence 77653
No 72
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.08 E-value=3e-09 Score=106.26 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=102.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||+++|..|.++ | ++|++|+++++..+++. +. +.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~-g-----~~V~~~d~~~~~~~~a~--------~~----------------g~------ 44 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL-G-----HTVYGVSRRESTCERAI--------ER----------------GL------ 44 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHH--------HC----------------CC------
Confidence 6899999999999999999988 7 89999999876544310 00 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
-...+++. +++.++|+||+|+|.+...++++++.+++++ ++ +|+.+.++...
T Consensus 45 -----------------------~~~~~~~~-~~~~~aDlVilavp~~~~~~~~~~l~~~l~~---~~-ii~d~~Svk~~ 96 (279)
T PRK07417 45 -----------------------VDEASTDL-SLLKDCDLVILALPIGLLLPPSEQLIPALPP---EA-IVTDVGSVKAP 96 (279)
T ss_pred -----------------------cccccCCH-hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCC---Cc-EEEeCcchHHH
Confidence 00123344 3578999999999999999999999988875 45 44555455432
Q ss_pred ccccccCCCHHHHHHhHhCCC--CccEEEEeCCc-----hhh-hhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEe
Q 012349 204 LEAVPRIITPTQMINRATGVP--IENILYLGGPN-----IAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~--~~~i~vlsGP~-----~a~-ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
..+.+.+....- .+| +.||. .+. .+..|.+..++.. .+++..+.++++++..|.+++.
T Consensus 97 ---------~~~~~~~~~~~~v~~HP---m~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~ 164 (279)
T PRK07417 97 ---------IVEAWEKLHPRFVGSHP---MAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYT 164 (279)
T ss_pred ---------HHHHHHHhhCCceeeCC---cCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 111122211100 011 22332 111 1234444333332 3456778899999999988765
Q ss_pred cCChHHHHHHHHHHHH
Q 012349 274 NGDLVTHEVMGGLKNV 289 (465)
Q Consensus 274 s~Di~gve~~galKNv 289 (465)
.+.-.--+..+..-|.
T Consensus 165 ~~~~~hD~~~a~~shl 180 (279)
T PRK07417 165 ADPEEHDRAVALISHL 180 (279)
T ss_pred cCHHHHHHHHHHHcch
Confidence 5443333333333333
No 73
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.04 E-value=5.1e-09 Score=105.89 Aligned_cols=166 Identities=20% Similarity=0.130 Sum_probs=101.3
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
.+...+||+|||+|.||.++|..|.+. |. .++|++|+|+++..+.+ .+. +.
T Consensus 2 ~~~~~~~I~IIG~G~mG~sla~~l~~~-g~---~~~V~~~dr~~~~~~~a---------~~~---------------g~- 52 (307)
T PRK07502 2 SAPLFDRVALIGIGLIGSSLARAIRRL-GL---AGEIVGADRSAETRARA---------REL---------------GL- 52 (307)
T ss_pred CccCCcEEEEEeeCHHHHHHHHHHHhc-CC---CcEEEEEECCHHHHHHH---------HhC---------------CC-
Confidence 334558999999999999999999987 61 14899999987644321 100 00
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
....+.+.+++++++|+||+|||+..+.++++++.+++++ +++|+ ...
T Consensus 53 ----------------------------~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~---~~iv~-dvg 100 (307)
T PRK07502 53 ----------------------------GDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKP---GAIVT-DVG 100 (307)
T ss_pred ----------------------------CceecCCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCC---CCEEE-eCc
Confidence 0123355667788999999999999999999999888876 55444 433
Q ss_pred cccccccccccCCCHHHHHHhHhCCC-----CccEE--EEeCCchhh-hhhccCceEEEE--eCChhHHHHHHHHHcCCC
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVP-----IENIL--YLGGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPH 268 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~-----~~~i~--vlsGP~~a~-ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g 268 (465)
++... ..+.+.+.++.. .+++. ..+||..+. ++..|.+..++. +.+++..+.++++|+..|
T Consensus 101 s~k~~---------~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG 171 (307)
T PRK07502 101 SVKAS---------VIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALG 171 (307)
T ss_pred cchHH---------HHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 33322 112233332211 01110 112333221 333454333332 235567788999999999
Q ss_pred CeEEec
Q 012349 269 FTVWDN 274 (465)
Q Consensus 269 ~~v~~s 274 (465)
.+++..
T Consensus 172 ~~~~~~ 177 (307)
T PRK07502 172 ARVEEM 177 (307)
T ss_pred CEEEEc
Confidence 887664
No 74
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.03 E-value=1.7e-08 Score=101.42 Aligned_cols=179 Identities=18% Similarity=0.172 Sum_probs=110.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+.||+|||+|.||..||..++.+ | ++|++|+++++.+++... ++...+.... +.. .+....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~~~~~~~-~i~~~~~~~~-------~~g-~~~~~~---- 65 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA-G-----VDVLVFETTEELATAGRN-RIEKSLERAV-------SRG-KLTERE---- 65 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH-HHHHHHHHHH-------hcc-cCChhh----
Confidence 45899999999999999999999 8 999999999987765321 2211111110 000 011000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhh-hccCCCCEEEEeecc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYW-KERITVPVIISLAKG 199 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l-~~~~~~~ivIs~~kG 199 (465)
. ++.+.+++.++|+ +++++||+||.|+|.+ ..++++.++..++ ++ +++++|.+.+
T Consensus 66 ---~---------------~~~~~~l~~~~~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~---~~il~snTS~ 123 (286)
T PRK07819 66 ---R---------------DAALARLRFTTDL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDP---DAVLASNTSS 123 (286)
T ss_pred ---H---------------HHHHhCeEeeCCH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 0011367788999 4589999999999976 5667788888887 66 7888888877
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEE--EEeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHc-CCCCeEEec
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLR-RPHFTVWDN 274 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~--vlsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~-~~g~~v~~s 274 (465)
+... .+.+....+ .++. ....|.... . ...++. ..+++..+.+..++. ..+..+...
T Consensus 124 ~~~~------------~la~~~~~~-~r~~g~hf~~P~~~~---~--lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 124 IPIM------------KLAAATKRP-GRVLGLHFFNPVPVL---P--LVELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred CCHH------------HHHhhcCCC-ccEEEEecCCCcccC---c--eEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 7654 244444433 2322 122222211 1 112232 346677888888866 467665555
Q ss_pred CChHHH
Q 012349 275 GDLVTH 280 (465)
Q Consensus 275 ~Di~gv 280 (465)
.|.-|-
T Consensus 186 ~d~pGf 191 (286)
T PRK07819 186 QDRSGF 191 (286)
T ss_pred cCCCCh
Confidence 775554
No 75
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.01 E-value=1.4e-08 Score=109.59 Aligned_cols=178 Identities=18% Similarity=0.180 Sum_probs=111.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||+.||..++++ | ++|++|+++++.+++... ++.+.++... +.. .+....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a-G-----~~V~l~d~~~e~l~~~~~-~i~~~l~~~~-------~~G-~~~~~~---- 65 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA-G-----HQVLLYDIRAEALARAIA-GIEARLNSLV-------TKG-KLTAEE---- 65 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------hcC-CCCHHH----
Confidence 46899999999999999999999 8 999999999987765321 1111111100 000 011000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--chHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--TETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps--~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
++ ..+.+++.++|+++ +.+||+||.|+|. +..+.++.++..++++ ++++.|.+.++
T Consensus 66 -----~~-------------~~~~~i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~---~~IlasnTStl 123 (503)
T TIGR02279 66 -----CE-------------RTLKRLIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPA---DTIIASNTSSL 123 (503)
T ss_pred -----HH-------------HHHhccEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCCC
Confidence 00 00125778889865 6899999999997 4566778888888876 67776777666
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEE--EEeCCchhhhhhccCceEEEEeC---ChhHHHHHHHHHcCCCCeEEecC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~--vlsGP~~a~ev~~g~~t~~~~~~---~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
... + +.+.+..+. ++. ....|.... .... ++.+ +++..+.+..++...+.......
T Consensus 124 ~i~-----------~-iA~~~~~p~-r~~G~HFf~Papv~-----~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~ 184 (503)
T TIGR02279 124 SIT-----------A-IAAGLARPE-RVAGLHFFNPAPVM-----ALVE-VVSGLATAAEVAEQLYETALAWGKQPVHCH 184 (503)
T ss_pred CHH-----------H-HHHhcCccc-ceEEEeccCccccC-----ceEE-EeCCCCCCHHHHHHHHHHHHHcCCeeeEeC
Confidence 543 2 444454332 211 112222211 1222 2333 67788999999999898877777
Q ss_pred ChHHH
Q 012349 276 DLVTH 280 (465)
Q Consensus 276 Di~gv 280 (465)
|.-|-
T Consensus 185 d~pGf 189 (503)
T TIGR02279 185 STPGF 189 (503)
T ss_pred CCCCc
Confidence 76553
No 76
>PLN02256 arogenate dehydrogenase
Probab=98.98 E-value=1.2e-08 Score=103.43 Aligned_cols=168 Identities=14% Similarity=0.119 Sum_probs=111.2
Q ss_pred hhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhh
Q 012349 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (465)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~ 103 (465)
..|.||.|=- .+.++|||+|||+|.||.++|..|.+. | ++|++|++++.. +. ...
T Consensus 22 ~~~~~~~~~~-----~~~~~~kI~IIG~G~mG~slA~~L~~~-G-----~~V~~~d~~~~~-~~---------a~~---- 76 (304)
T PLN02256 22 DYESRLQEEL-----EKSRKLKIGIVGFGNFGQFLAKTFVKQ-G-----HTVLATSRSDYS-DI---------AAE---- 76 (304)
T ss_pred ChHhHHhHhh-----ccCCCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECccHH-HH---------HHH----
Confidence 3566766522 333568999999999999999999887 7 789999988521 10 000
Q ss_pred HHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHH-H
Q 012349 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEI-S 181 (465)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l-~ 181 (465)
+ ++...++.++++ .++|+||+|||++.+.++++++ .
T Consensus 77 ----------~--------------------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~~ 114 (304)
T PLN02256 77 ----------L--------------------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPL 114 (304)
T ss_pred ----------c--------------------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhhh
Confidence 0 122345666655 4699999999999999999998 5
Q ss_pred HhhhccCCCCEEEEeec--cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhcc----CceEEEE-----
Q 012349 182 RYWKERITVPVIISLAK--GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARI----- 250 (465)
Q Consensus 182 ~~l~~~~~~~ivIs~~k--Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g----~~t~~~~----- 250 (465)
+++++ +++|++++. |... +.+.+.++.. .+ .+...|++..+...+ ...+...
T Consensus 115 ~~l~~---~~iviDv~SvK~~~~------------~~~~~~l~~~-~~-~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~ 177 (304)
T PLN02256 115 QRLKR---STLFVDVLSVKEFPK------------NLLLQVLPEE-FD-ILCTHPMFGPESGKGGWAGLPFVYDKVRIGD 177 (304)
T ss_pred hccCC---CCEEEecCCchHHHH------------HHHHHhCCCC-Ce-EEecCCCCCCCCCccccCCCeEEEecceecC
Confidence 66766 678887764 3322 3466666421 12 466778888775532 2211111
Q ss_pred e-CChhHHHHHHHHHcCCCCeEEecC
Q 012349 251 C-GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 251 ~-~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
. .+++..+.+.++++..|-++...+
T Consensus 178 ~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 178 EGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 1 134567889999998898876644
No 77
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.98 E-value=7.1e-09 Score=110.71 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=99.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
+|+|||.|.||.+||..|+++ | ++|++|+|+++.++.+. +.+ .++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-G-----~~V~v~drt~~~~~~l~--------~~~-------------~~g-------- 45 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-G-----FTVSVYNRTPEKTDEFL--------AEH-------------AKG-------- 45 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHH--------hhc-------------cCC--------
Confidence 489999999999999999999 8 89999999987665421 110 000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHh---cCCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal---~~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
..+...+++++++ +.+|+||+++|+ ..++++++.+.+++.+ +++||.++++.
T Consensus 46 ---------------------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~---g~iIID~gns~ 101 (467)
T TIGR00873 46 ---------------------KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEK---GDIIIDGGNSH 101 (467)
T ss_pred ---------------------CCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCC---CCEEEECCCcC
Confidence 0122334455543 568999999998 7899999999999876 68899888876
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCe
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~ 270 (465)
...+ ... .+.+.+ .|.......|..||.-|. .| + .++++++++..++++.+|+..+-+
T Consensus 102 ~~~t-----~~~-~~~l~~-~gi~fvdapVsGG~~gA~---~G-~-~im~GG~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 102 YPDT-----ERR-YKELKA-KGILFVGSGVSGGEEGAR---KG-P-SIMPGGSAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred HHHH-----HHH-HHHHHh-cCCEEEcCCCCCCHHHHh---cC-C-cCCCCCCHHHHHHHHHHHHHHhhh
Confidence 5542 111 111211 121100112333333222 34 3 356788888888888888865443
No 78
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.95 E-value=4e-08 Score=106.15 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=110.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|||+|.||..||..++.+ | ++|++|+++++.+++... ++.+.+++.. +.. .+....
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~a-G-----~~V~l~D~~~e~l~~~~~-~i~~~l~~~~-------~~G-~~~~~~---- 67 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQA-G-----HTVLLYDARAGAAAAARD-GIAARLAKLV-------EKG-KLTAEQ---- 67 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------HcC-CCCHHH----
Confidence 46899999999999999999998 8 999999999987765321 1221121110 000 011000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+..++.++++++ +.+||+||.|+|.. ..+.++.++..++++ ++++.|.+.++
T Consensus 68 -----~-------------~~~~~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~---~ailasntStl 125 (507)
T PRK08268 68 -----A-------------DAALARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSP---DCILATNTSSL 125 (507)
T ss_pred -----H-------------HHHHhCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 0 001125778888865 67999999999975 455667888887776 67776777666
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccE--EEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENI--LYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i--~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.. .+.+.+..+ .++ .....|.... ....++.+ .+++..+.+..++...+..+....|
T Consensus 126 ~i~------------~la~~~~~p-~r~~G~hff~Pa~v~-----~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d 187 (507)
T PRK08268 126 SIT------------AIAAALKHP-ERVAGLHFFNPVPLM-----KLVEVVSGLATDPAVADALYALARAWGKTPVRAKD 187 (507)
T ss_pred CHH------------HHHhhcCCc-ccEEEEeecCCcccC-----eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecC
Confidence 653 255545433 221 1122222222 22222222 3677888899999888877777677
Q ss_pred hHH
Q 012349 277 LVT 279 (465)
Q Consensus 277 i~g 279 (465)
.-|
T Consensus 188 ~pG 190 (507)
T PRK08268 188 TPG 190 (507)
T ss_pred CCC
Confidence 655
No 79
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.94 E-value=1.4e-08 Score=105.08 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=102.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|.||+++|..|.++ | ++|.+|+++++..+. .... ...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~-G-----~~v~i~~~~~~~~~~---------~~a~------------~~~-------- 45 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA-G-----PDVFIIGYDPSAAQL---------ARAL------------GFG-------- 45 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc-C-----CCeEEEEeCCCHHHH---------HHHh------------cCC--------
Confidence 4799999999999999999988 7 899999998754321 0000 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh-hhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~-l~~~~~~~ivIs~~kGi~~ 202 (465)
+ ....++++++++++||+||+|||++.+.++++++.+. +++ ++ +|+...++..
T Consensus 46 ----------------~------~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~---~~-ivtDv~SvK~ 99 (359)
T PRK06545 46 ----------------V------IDELAADLQRAAAEADLIVLAVPVDATAALLAELADLELKP---GV-IVTDVGSVKG 99 (359)
T ss_pred ----------------C------CcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCC---Cc-EEEeCccccH
Confidence 0 0123467778889999999999999999999999873 665 44 5554445433
Q ss_pred cccccccCCCHHHHHHhHhCCCC-----ccEE--EEeCCchhh-hhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEE
Q 012349 203 ELEAVPRIITPTQMINRATGVPI-----ENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVW 272 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~-----~~i~--vlsGP~~a~-ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~ 272 (465)
. +.+.+++.++... +|++ ..+||..+. ++..+.+..++.. .+++..+.++++|+..|-+++
T Consensus 100 ~---------i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v 170 (359)
T PRK06545 100 A---------ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFV 170 (359)
T ss_pred H---------HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 1123333322111 1111 123333333 4556665544443 356678899999999998875
Q ss_pred ec
Q 012349 273 DN 274 (465)
Q Consensus 273 ~s 274 (465)
..
T Consensus 171 ~~ 172 (359)
T PRK06545 171 VL 172 (359)
T ss_pred EC
Confidence 43
No 80
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.91 E-value=5.1e-08 Score=109.38 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=118.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|||+|.||..||..++.+ | ++|++++++++.+++... ++...+.+.. +.. .+....
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~-------~~g-~~~~~~---- 373 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK-G-----VPVIMKDINQKALDLGMT-EAAKLLNKQV-------ERG-KIDGAK---- 373 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------HcC-CCChhh----
Confidence 46899999999999999999999 8 999999999987765321 1111121110 000 111000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+..++.++|++ ++.+||+||.|||.. ..++++.++.+++++ ++++.|.|.++
T Consensus 374 ---~---------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasNTSsl 431 (715)
T PRK11730 374 ---M---------------AGVLSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVRE---DTILASNTSTI 431 (715)
T ss_pred ---H---------------HHHHhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 0 00013688889985 579999999999975 688999999999987 78888888887
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.. + |.+.+..| .++..+ ..|-... ....++.+ .+++..+.+.+++...|.......|
T Consensus 432 ~i~-----------~-la~~~~~p-~r~~g~Hff~P~~~~-----~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d 493 (715)
T PRK11730 432 SIS-----------L-LAKALKRP-ENFCGMHFFNPVHRM-----PLVEVIRGEKTSDETIATVVAYASKMGKTPIVVND 493 (715)
T ss_pred CHH-----------H-HHhhcCCC-ccEEEEecCCccccc-----ceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecC
Confidence 664 3 55555543 233222 2222211 12222222 3567788888888888887777788
Q ss_pred hHHHHH
Q 012349 277 LVTHEV 282 (465)
Q Consensus 277 i~gve~ 282 (465)
.-|-..
T Consensus 494 ~pGfv~ 499 (715)
T PRK11730 494 CPGFFV 499 (715)
T ss_pred cCchhH
Confidence 777543
No 81
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.88 E-value=1.5e-08 Score=102.30 Aligned_cols=178 Identities=20% Similarity=0.212 Sum_probs=112.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||+.||..+|.. | ++|++++++++.+++.... +...+++. .+.. .+....
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~-G-----~~V~l~D~~~~~~~~~~~~-i~~~l~k~-------~~~g-~l~~~~---- 63 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA-G-----YDVVLKDISPEALERALAY-IEKNLEKL-------VEKG-KLTEEE---- 63 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc-C-----CceEEEeCCHHHHHHHHHH-HHHHHHHH-------HhcC-CCChhh----
Confidence 47999999999999999999997 7 8999999998877654321 11111111 0110 111100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+..++.++++. ++.+||+||.+|+.. ..+++++++..++++ ++++-|.|.++
T Consensus 64 -----~-------------~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~---~aIlASNTSsl 121 (307)
T COG1250 64 -----A-------------DAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKP---DAILASNTSSL 121 (307)
T ss_pred -----H-------------HHHHhhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCC---CcEEeeccCCC
Confidence 0 00123577778876 689999999999976 688899999999987 78888999888
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEE--EeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILY--LGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~v--lsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.. + +.+.+..| .++.. ...|-... ....++.+ .+++..+++.++..+.+-.+....|
T Consensus 122 ~it-----------~-ia~~~~rp-er~iG~HFfNP~~~m-----~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D 183 (307)
T COG1250 122 SIT-----------E-LAEALKRP-ERFIGLHFFNPVPLM-----PLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKD 183 (307)
T ss_pred CHH-----------H-HHHHhCCc-hhEEEEeccCCCCcc-----eeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecC
Confidence 764 2 55555443 23221 12222221 11222222 3567778888888877744455566
Q ss_pred hHH
Q 012349 277 LVT 279 (465)
Q Consensus 277 i~g 279 (465)
.-|
T Consensus 184 ~pG 186 (307)
T COG1250 184 VPG 186 (307)
T ss_pred CCc
Confidence 554
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.87 E-value=9.2e-08 Score=107.10 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=117.3
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La-~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+||+|||+|.||+.||..++ .+ | ++|++|+.+++.+++... ++.+.+.+.. +.. .+..-.
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~-------~~~-~~~~~~--- 365 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA-G-----IPVRIKDINPQGINNALK-YAWKLLDKGV-------KRR-HMTPAE--- 365 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------HcC-CCCHHH---
Confidence 468999999999999999998 46 7 899999999887665321 1111111110 000 011000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+ +..+..++.++|++ ++.+||+||.|||.. ..++++.++.+++++ ++++.|.|.+
T Consensus 366 -----------~--------~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS~ 422 (699)
T TIGR02440 366 -----------R--------DNQMALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAA---HTIFASNTSS 422 (699)
T ss_pred -----------H--------HHHHcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCC---CcEEEeCCCC
Confidence 0 00013688889985 689999999999986 678899999999987 7888888888
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
++.. + |.+.+..| .++..+ ..|-+.. ....++.+ .+++..+.+.+++...|....+..
T Consensus 423 l~i~-----------~-la~~~~~p-~r~~g~HffnP~~~~-----~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 423 LPIG-----------Q-IAAAASRP-ENVIGLHYFSPVEKM-----PLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred CCHH-----------H-HHHhcCCc-ccEEEEecCCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 7764 3 45555443 233222 2222211 12222222 356778888899998888877778
Q ss_pred ChHHHHHH
Q 012349 276 DLVTHEVM 283 (465)
Q Consensus 276 Di~gve~~ 283 (465)
|.-|-...
T Consensus 485 d~pGfi~n 492 (699)
T TIGR02440 485 DKAGFYVN 492 (699)
T ss_pred cccchHHH
Confidence 87665443
No 83
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.83 E-value=6.8e-08 Score=108.34 Aligned_cols=181 Identities=14% Similarity=0.104 Sum_probs=117.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
...||+|||+|.||..||..++.+ | ++|++++++++.+++... ++...++... +.. .+....
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~~~~~~-------~~g-~~~~~~--- 373 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK-G-----TPIVMKDINQHSLDLGLT-EAAKLLNKQV-------ERG-RITPAK--- 373 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------HcC-CCChhh---
Confidence 346899999999999999999999 8 999999999987765321 1111111110 000 111000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
. +..+..++.++|++ ++.+||+||.|||.+ ..++++.++.+++++ ++++.|.|.+
T Consensus 374 ------~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasnTS~ 430 (714)
T TIGR02437 374 ------M-------------AGVLNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVRE---DAILASNTST 430 (714)
T ss_pred ------H-------------HHHHhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 00113688888984 579999999999976 688999999999987 7888888887
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
++.. + |.+.+..| .++..+ ..|-+.. ....++.+ .+++..+.+.+++...|.......
T Consensus 431 l~i~-----------~-ia~~~~~p-~r~ig~Hff~P~~~~-----~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 492 (714)
T TIGR02437 431 ISIS-----------L-LAKALKRP-ENFCGMHFFNPVHRM-----PLVEVIRGEKSSDETIATVVAYASKMGKTPIVVN 492 (714)
T ss_pred CCHH-----------H-HHhhcCCc-ccEEEEecCCCcccC-----ceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 7664 3 45555543 233222 2222211 11222222 356778888888888887777777
Q ss_pred ChHHHH
Q 012349 276 DLVTHE 281 (465)
Q Consensus 276 Di~gve 281 (465)
|.-|-.
T Consensus 493 d~pGfi 498 (714)
T TIGR02437 493 DCPGFF 498 (714)
T ss_pred Ccccch
Confidence 876643
No 84
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.82 E-value=1.4e-07 Score=105.79 Aligned_cols=181 Identities=16% Similarity=0.160 Sum_probs=115.2
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La-~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..||+|||+|.||+.||..++ .+ | ++|++++++++.+++... .+.+.+.+.. +.. .+....
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~-------~~~-~~~~~~--- 370 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA-G-----LPVRIKDINPQGINHALK-YSWDLLDKKV-------KRR-HLKPSE--- 370 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------HcC-CCCHHH---
Confidence 478999999999999999999 66 7 899999999876665321 1111111110 000 011000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
. +..+..++.++|+ +++.+||+||.|||.. ..++++.++.+++++ ++++.|.|.+
T Consensus 371 ------~-------------~~~~~~i~~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~---~~ilasnTS~ 427 (708)
T PRK11154 371 ------R-------------DKQMALISGTTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAP---HTIFASNTSS 427 (708)
T ss_pred ------H-------------HHHHhcEEEeCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 0011368889998 4689999999999986 678899999999988 7888888888
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
++.. + |.+.+..+ .++..+ ..|-+.. ....++.+ .+++..+.+.+++...|.......
T Consensus 428 l~i~-----------~-la~~~~~p-~r~ig~Hff~P~~~~-----~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 428 LPIG-----------Q-IAAAAARP-EQVIGLHYFSPVEKM-----PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred CCHH-----------H-HHHhcCcc-cceEEEecCCccccC-----ceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 7764 3 45555543 233222 2222211 12223322 356777888888888887666667
Q ss_pred ChHHHHH
Q 012349 276 DLVTHEV 282 (465)
Q Consensus 276 Di~gve~ 282 (465)
|.-|-..
T Consensus 490 d~pGfi~ 496 (708)
T PRK11154 490 DGAGFYV 496 (708)
T ss_pred ccCcHHH
Confidence 7655433
No 85
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.81 E-value=6e-08 Score=109.04 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=116.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..+|+|||+|.||+.||..++.+ | ++|++|+++++.+++... ++.+.+.+.. +. ..+....
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l~~~~-------~~-g~~~~~~---- 395 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK-G-----LKTVLKDATPAGLDRGQQ-QVFKGLNKKV-------KR-KKITSLE---- 395 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC-C-----CcEEEecCCHHHHHHHHH-HHHHHHHHHH-------Hc-CCCCHHH----
Confidence 46899999999999999999999 8 899999999987775321 1111111110 00 0111100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+..++.++|++ ++.+||+||.|||.+ ..++++.++.+++++ ++++.|.|.++
T Consensus 396 -----~-------------~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~---~~ilasNTSsl 453 (737)
T TIGR02441 396 -----R-------------DSILSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPP---HCIIASNTSAL 453 (737)
T ss_pred -----H-------------HHHHhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 0 00113688889985 579999999999976 688899999999987 78888888887
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.. .|.+.+..| .++..+ ..|-+.. ....++.+ .+++..+.+..++...|....+..|
T Consensus 454 ~i~------------~la~~~~~p-~r~ig~Hff~P~~~m-----~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d 515 (737)
T TIGR02441 454 PIK------------DIAAVSSRP-EKVIGMHYFSPVDKM-----QLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKD 515 (737)
T ss_pred CHH------------HHHhhcCCc-cceEEEeccCCcccC-----ceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECC
Confidence 664 355556544 333222 1222211 12222222 3567778888888888887777788
Q ss_pred hHHH
Q 012349 277 LVTH 280 (465)
Q Consensus 277 i~gv 280 (465)
.-|-
T Consensus 516 ~pGF 519 (737)
T TIGR02441 516 GPGF 519 (737)
T ss_pred cCCc
Confidence 7664
No 86
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.78 E-value=2.8e-07 Score=91.63 Aligned_cols=199 Identities=16% Similarity=0.136 Sum_probs=118.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|++||.|+||.+++..|.++ | |.|++|+|+.++.+... +.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~-G-----~kVtV~dr~~~k~~~f~--------~~----------------------- 77 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKA-G-----YKVTVYDRTKDKCKEFQ--------EA----------------------- 77 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHc-C-----CEEEEEeCcHHHHHHHH--------Hh-----------------------
Confidence 57999999999999999999999 8 99999999987654311 11
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHHHHHHhhh---ccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWK---ERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~~l~~~l~---~~~~~~ivIs~~k 198 (465)
.-++..++.|..+++|+||.+||. .+.++++-.-...+. +. ++..|- +.
T Consensus 78 ------------------------Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g--~~~~vD-mS 130 (327)
T KOG0409|consen 78 ------------------------GARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPG--KKATVD-MS 130 (327)
T ss_pred ------------------------chhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCC--CceEEe-cc
Confidence 123456778889999999999985 466666544222222 21 111121 11
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhh--hccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev--~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
.++++ .+..|.+..-.. ....+-.|-.-..- ..|..+ ++++++++..+....+|+..|-++.+-..
T Consensus 131 Tidp~---------~s~ei~~~i~~~--~~~~vDAPVSGg~~~A~~G~Lt-imagGde~~~~~~~~~~~~mGk~~~~~G~ 198 (327)
T KOG0409|consen 131 TIDPD---------TSLEIAKAISNK--GGRFVDAPVSGGVKGAEEGTLT-IMAGGDEALFEAASPVFKLMGKNVVFLGG 198 (327)
T ss_pred ccCHH---------HHHHHHHHHHhC--CCeEEeccccCCchhhhcCeEE-EEecCcHHHHHHHHHHHHHhcceEEEecc
Confidence 23333 222343333211 11234444332221 245444 34568888889999999999866665443
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
+=--+-++..-| ........++.|...++..+|.++.++.+
T Consensus 199 ~GnG~~~Kl~nn------------------m~~g~~M~g~aEal~la~r~GLd~~~l~e 239 (327)
T KOG0409|consen 199 VGNGQAAKLCNN------------------MLLGSSMVGLAEALALADRLGLDAKKLLE 239 (327)
T ss_pred cCchHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 211111222222 11123346788989999999998877654
No 87
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.78 E-value=1.3e-07 Score=106.43 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=100.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|.||.+++..|.++ |. .++|++|+++++.++.. .+. +.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-G~---~~~V~~~d~~~~~~~~a---------~~~---------------g~------ 49 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-GL---AREVVAVDRRAKSLELA---------VSL---------------GV------ 49 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CC---CCEEEEEECChhHHHHH---------HHC---------------CC------
Confidence 6899999999999999999987 61 14799999987654321 000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
....+++.++++.++|+||+|||++.++++++++.+++++ ++ +|+...|+...
T Consensus 50 -----------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~~~~---~~-ii~d~~svk~~ 102 (735)
T PRK14806 50 -----------------------IDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADLKPLLSE---HA-IVTDVGSTKGN 102 (735)
T ss_pred -----------------------CCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHHHHhcCC---Cc-EEEEcCCCchH
Confidence 0012356667788999999999999999999999998765 44 55555455432
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhh-------------hhhccCceEEEEe--CChhHHHHHHHHHcCCC
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-------------EIYNKEYANARIC--GAEKWRKPLAKFLRRPH 268 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~-------------ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g 268 (465)
+.+.+++.++.. .+...|+++. +...+....++.. .+++..+.++++|+..|
T Consensus 103 ---------~~~~l~~~~~~~----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 169 (735)
T PRK14806 103 ---------VVDAARAVFGEL----PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVG 169 (735)
T ss_pred ---------HHHHHHHhcccc----CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 123455554321 1233444442 1223333333332 34566788999999999
Q ss_pred CeEEec
Q 012349 269 FTVWDN 274 (465)
Q Consensus 269 ~~v~~s 274 (465)
-+++..
T Consensus 170 ~~~~~~ 175 (735)
T PRK14806 170 ADVLHM 175 (735)
T ss_pred CEEEEc
Confidence 766554
No 88
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.76 E-value=8e-09 Score=91.57 Aligned_cols=99 Identities=25% Similarity=0.485 Sum_probs=60.9
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
...+||+|||+|.+|++|+..|.++ | +.|. +|+|+.+..++. . .+++.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~a-g-----~~v~~v~srs~~sa~~a---------~-------------~~~~~--- 56 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARA-G-----HEVVGVYSRSPASAERA---------A-------------AFIGA--- 56 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHT-T-----SEEEEESSCHH-HHHHH---------H-------------C--TT---
T ss_pred CCccEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCccccccc---------c-------------ccccc---
Confidence 3468999999999999999999998 7 7765 456665433220 0 01111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh--hhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY--WKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~--l~~~~~~~ivIs~~ 197 (465)
. ...++.+.+.++|++|++||.+.+.+++++|..+ +.+ +++|+.++
T Consensus 57 ----------------------------~-~~~~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~---g~iVvHtS 104 (127)
T PF10727_consen 57 ----------------------------G-AILDLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRP---GQIVVHTS 104 (127)
T ss_dssp ----------------------------------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-T---T-EEEES-
T ss_pred ----------------------------c-cccccccccccCCEEEEEechHHHHHHHHHHHHhccCCC---CcEEEECC
Confidence 1 1234557789999999999999999999999986 544 67888777
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
-.++.
T Consensus 105 Ga~~~ 109 (127)
T PF10727_consen 105 GALGS 109 (127)
T ss_dssp SS--G
T ss_pred CCChH
Confidence 43433
No 89
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.74 E-value=3.6e-07 Score=95.22 Aligned_cols=141 Identities=24% Similarity=0.304 Sum_probs=92.8
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+++|+||| +|.||+.+|..|.++ | ++|++|+++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-G-----~~V~~~d~~~~------------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-G-----YQVRILEQDDW------------------------------------- 133 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-C-----CeEEEeCCCcc-------------------------------------
Confidence 458999999 999999999999998 7 89999997531
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
++.++++.+||+||+|||.....++++++.+ +++ +++|+.++ ++
T Consensus 134 -------------------------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~---~~iv~Dv~-Sv 177 (374)
T PRK11199 134 -------------------------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPE---DCILVDLT-SV 177 (374)
T ss_pred -------------------------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCC---CcEEEECC-Cc
Confidence 0123456789999999999999999999988 766 67777664 22
Q ss_pred cccccccccCCCHHHHHHhHhCCC---CccEEEEeCCchhhhhhccCceEEEEeC-ChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVP---IENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~---~~~i~vlsGP~~a~ev~~g~~t~~~~~~-~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
-.. +.+.+.+..+.+ .+| +.||.... ..+... +.... +++..+.+.++++..|.++...+.
T Consensus 178 K~~---------~~~~~~~~~~~~fvg~HP---m~G~~~~~--~~~~~v-v~~~~~~~~~~~~~~~l~~~lG~~v~~~~~ 242 (374)
T PRK11199 178 KNA---------PLQAMLAAHSGPVLGLHP---MFGPDVGS--LAKQVV-VVCDGRQPEAYQWLLEQIQVWGARLHRISA 242 (374)
T ss_pred cHH---------HHHHHHHhCCCCEEeeCC---CCCCCCcc--cCCCEE-EEcCCCCchHHHHHHHHHHHCCCEEEECCH
Confidence 111 122333333211 111 44554321 223221 22223 445678899999999988876553
No 90
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.65 E-value=4.4e-07 Score=90.83 Aligned_cols=161 Identities=17% Similarity=0.276 Sum_probs=100.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|+|+|+|.|.||..+|..|.++ | +.|.+|+++...... ... ..+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~-g-----~~v~i~g~d~~~~~~----------~~a-----------~~l------- 47 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEA-G-----LVVRIIGRDRSAATL----------KAA-----------LEL------- 47 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHc-C-----CeEEEEeecCcHHHH----------HHH-----------hhc-------
Confidence 358999999999999999999998 7 889899888642111 000 001
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCH-HHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNL-QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl-~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+++ ...+.+. .+++.++|+||+|||-..+.++++++.+.+++ +++|.-++ ++
T Consensus 48 -----------------gv~------d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~---g~iv~Dv~-S~ 100 (279)
T COG0287 48 -----------------GVI------DELTVAGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKK---GAIVTDVG-SV 100 (279)
T ss_pred -----------------Ccc------cccccchhhhhcccCCEEEEeccHHHHHHHHHHhcccCCC---CCEEEecc-cc
Confidence 110 1122332 45678899999999999999999999998887 67665443 11
Q ss_pred cccccccccCCCHHHHHHhHhCCC-----CccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEe
Q 012349 201 EAELEAVPRIITPTQMINRATGVP-----IENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~-----~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~ 273 (465)
- ..+-+.+.+..+.. .+| +.||.--.....+.....+... +.++.+.+.+++...|-+++.
T Consensus 101 K---------~~v~~a~~~~~~~~~~~vg~HP---M~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~ 168 (279)
T COG0287 101 K---------SSVVEAMEKYLPGDVRFVGGHP---MFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVE 168 (279)
T ss_pred c---------HHHHHHHHHhccCCCeeEecCC---CCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 0 11223444444321 122 3444301123344433333332 346889999999998877766
Q ss_pred cC
Q 012349 274 NG 275 (465)
Q Consensus 274 s~ 275 (465)
.+
T Consensus 169 ~~ 170 (279)
T COG0287 169 MD 170 (279)
T ss_pred cC
Confidence 44
No 91
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.62 E-value=8.1e-07 Score=88.58 Aligned_cols=227 Identities=14% Similarity=0.105 Sum_probs=140.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++||+.||||.+|..-...+|.+ +|..+|++++.+..+...+|.++ -|.|.|++.
T Consensus 1 ~~kiccigagyvggptcavia~k----cp~i~vtvvd~s~~ri~~wnsd~-----------------lpiyepgld---- 55 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALK----CPDIEVTVVDISVPRINAWNSDK-----------------LPIYEPGLD---- 55 (481)
T ss_pred CceEEEecCcccCCcchheeeec----CCceEEEEEecCchHhhcccCCC-----------------CcccCCCHH----
Confidence 47999999999999988888866 34468999999988777655443 366777652
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc---------------chHHHHHHHHHHhhhcc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------TETKEVFEEISRYWKER 187 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps---------------~~l~~vl~~l~~~l~~~ 187 (465)
|+|.. |.+ .++-+++|.+.++..+|+||++|.. .+.+++.+.|+.+-..
T Consensus 56 -------evv~~--crg------knlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~- 119 (481)
T KOG2666|consen 56 -------EVVKQ--CRG------KNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVS- 119 (481)
T ss_pred -------HHHHH--hcC------CceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccC-
Confidence 45543 112 3678899999999999999998843 2577777778776443
Q ss_pred CCCCEEEEeeccccccccccccCCCHHHHHHhHhCCC--CccEEEEeCCchhhhhhccC----ceEEEEeCCh-----hH
Q 012349 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--IENILYLGGPNIASEIYNKE----YANARICGAE-----KW 256 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~--~~~i~vlsGP~~a~ev~~g~----~t~~~~~~~~-----~~ 256 (465)
++++ +-|...+- ...|.|...+... ...+-+++.|.|..|...-+ +..+.+++.+ ..
T Consensus 120 --~kiv--vekstvpv--------~aaesi~~il~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~a 187 (481)
T KOG2666|consen 120 --DKIV--VEKSTVPV--------KAAESIEKILNHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQA 187 (481)
T ss_pred --CeEE--Eeeccccc--------hHHHHHHHHHhcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHH
Confidence 4443 34443332 2235566655321 23467899999988755321 4455666532 23
Q ss_pred HHHHHHHHcCCCC-eEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCC
Q 012349 257 RKPLAKFLRRPHF-TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEE 329 (465)
Q Consensus 257 ~~~l~~ll~~~g~-~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~ 329 (465)
.+.+..++...-- .-.++++.+..|+.+..-|.+ .+. ...+-|+.+++...-=+++..++.+.|.+
T Consensus 188 v~~l~~vyehwvp~~~iittntwsselsklaanaf--laq-----rissins~salceatgadv~eva~avg~d 254 (481)
T KOG2666|consen 188 VQALKDVYEHWVPREQIITTNTWSSELSKLAANAF--LAQ-----RISSINSMSALCEATGADVSEVAYAVGTD 254 (481)
T ss_pred HHHHHHHHHhhCcccceeeccccHHHHHHHHHHHH--HHH-----HHhhhHHHHHHHHhcCCCHHHHHHHhccc
Confidence 4556666654321 224567788899988777742 111 11122333344433334555666666654
No 92
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.62 E-value=2.2e-07 Score=90.39 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=115.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|+|++||+|.|..+++..+... |...+ +++..+..+..... ..+..
T Consensus 1 ~~~gfigag~ma~ala~g~~~~-Gi~~~-~~i~~s~~~~~~~~-------------------------~~~~~------- 46 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS-GIIEA-NRIWASVQTERSLG-------------------------LMFEA------- 46 (267)
T ss_pred CceeEechhhhHHHHHhccccc-CCCch-hheeeecCchhhhh-------------------------hhhhc-------
Confidence 6899999999999999999888 86554 45555544221000 00110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
..++.+.+..+.++.+|+++++||++.+++++.++.+.+.. ..+++|+..|+..+
T Consensus 47 ----------------------~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~~~~~~~~---~~iivS~aaG~tl~ 101 (267)
T KOG3124|consen 47 ----------------------LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSEIKPKVSK---GKIIVSVAAGKTLS 101 (267)
T ss_pred ----------------------CCceeeechHHHHhhccceeEeecchhHHHHhhcCcccccc---ceEEEEEeecccHH
Confidence 02333333367788999999999999999999999875444 57999999999875
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
.+++.++.+ .+ +++.+||.+.-+..|...+..-+ ...++.+.++++|+..|+...+.+|.+.
T Consensus 102 ------------~l~~~l~~~-~r-viRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~iD 164 (267)
T KOG3124|consen 102 ------------SLESKLSPP-TR-VIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCID 164 (267)
T ss_pred ------------HHHHhcCCC-Cc-eEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhhh
Confidence 356666622 23 57899999998888864222212 2456779999999999999999888654
No 93
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=98.59 E-value=1.2e-07 Score=99.07 Aligned_cols=236 Identities=11% Similarity=0.064 Sum_probs=124.1
Q ss_pred ceEEEECccHHHHHH-HHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsal-A~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+++|+|+||+++ +..|++. | ++|+++++++++++.++.+++-.+ ...+.. .
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~-g-----~~V~~vd~~~~~v~aL~~qglY~v----------------~~~~~~---~ 55 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN-G-----FEVTFVDVNQELIDALNKRKSYQV----------------IVVGEN---E 55 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHhcCCCeEE----------------EEecCC---C
Confidence 799999999999855 8888877 7 899999998888877554332000 011000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEe--cCHHH---HhcCCCEEEEecCcchHHHHHHHHHHhhhccC-----CCCE
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVV--TNLQE---AVWDADIVINGLPSTETKEVFEEISRYWKERI-----TVPV 192 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t--~dl~e---al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~-----~~~i 192 (465)
... .. .++... .+.++ ++.++|+|.++|++..+++++..|.+.+.+.. +.-.
T Consensus 56 ~~~-----------~i-------~~v~~~~~~~~~~~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~ 117 (381)
T PRK02318 56 QVE-----------TV-------SNVSAINSADEEAVIEAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLN 117 (381)
T ss_pred cEE-----------EE-------eeEeeeCCCCHHHHHHHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCE
Confidence 000 00 022222 12122 34588999999999999999999988775421 0126
Q ss_pred EEEeecccccccc-cc--ccC--CCHHHHHHhHhCCCCccEEEEeCCchhh----hhhccCceEEEEeCChhHHHHHHHH
Q 012349 193 IISLAKGVEAELE-AV--PRI--ITPTQMINRATGVPIENILYLGGPNIAS----EIYNKEYANARICGAEKWRKPLAKF 263 (465)
Q Consensus 193 vIs~~kGi~~~~~-~~--~~~--~~~se~I~e~lg~~~~~i~vlsGP~~a~----ev~~g~~t~~~~~~~~~~~~~l~~l 263 (465)
|+||.||+.+... +. ... ....+.+.+..+.+ ...+-+.+|.... .+....+...++... +.. .
T Consensus 118 VlsceN~~~ng~~L~~~V~~~~~~~~~~wi~~~~~f~-~t~VDrI~P~~~~~d~~~v~~E~f~~wviE~~-~~~----~- 190 (381)
T PRK02318 118 IIACENMIRGTSFLKKHVLKALSEDEKAWLEEHVGFV-DSAVDRIVPAQKNEDPLDVTVEPFSEWIVDKT-QFK----G- 190 (381)
T ss_pred EEecCChhhHHHHHHHHHHHhCCHHHHHHHHhcCCCC-CcHHhcCCCCCCccCCcccccccceEEEEecc-ccc----C-
Confidence 8999999987520 00 000 00011111222222 1123445552100 000011111111110 000 0
Q ss_pred HcCCCCeEEecCChHHHHHHHHHHHHHHHHH----Hhhhccc-----CCCcchHHHHHHHHHHHHHHHHH-HhCCCc
Q 012349 264 LRRPHFTVWDNGDLVTHEVMGGLKNVYAIGA----GMVAALT-----NESATSKSVYFAHCTSEMVFITH-LLAEEP 330 (465)
Q Consensus 264 l~~~g~~v~~s~Di~gve~~galKNviAia~----Gi~~gl~-----~g~~n~~a~li~~~~~E~~~l~~-a~G~~~ 330 (465)
..-+...+.+++|+...+|.|...|-..-++ |...|.. ..++.. ..++...+.|+..++. +.|.++
T Consensus 191 ~~p~~~~v~~~~dv~~~~~~Kl~~ln~~ha~~A~~g~l~G~~tv~ea~~d~~~-~~~v~~l~~E~~~v~~~~~g~~~ 266 (381)
T PRK02318 191 ALPKIKGMEYVDNLMPFIERKLFTVNTGHATTAYLGYLKGYKTIREAILDPSI-RAVVKGALEESGAVLIKKYGFDK 266 (381)
T ss_pred CCCCCCCcEEccCccHHHHHHHHhccHHHHHHHHHHHHcCcchHHHHHcCHHH-HHHHHHHHHHHHhhcCCcCCcCH
Confidence 0001126888999999999998765533333 3333332 112333 3688889999888874 456543
No 94
>PLN02712 arogenate dehydrogenase
Probab=98.58 E-value=7.5e-07 Score=99.19 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=99.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+.|||+|||+|.||..+|..|.+. | ++|.+|+|+... +. ... +
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~---------a~~--------------~------- 410 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQ-G-----HTVLAYSRSDYS-DE---------AQK--------------L------- 410 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC-c-----CEEEEEECChHH-HH---------HHH--------------c-------
Confidence 458999999999999999999987 7 899999998531 11 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCcchHHHHHHHHHH-hhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~-~aDiVIlaVps~~l~~vl~~l~~-~l~~~~~~~ivIs~~kG 199 (465)
++...+++++++. .+|+||+|||...+.++++++.. .+++ +++++.++.+
T Consensus 411 -------------------------Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~---g~ivvDv~Sv 462 (667)
T PLN02712 411 -------------------------GVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKR---STLFVDVLSV 462 (667)
T ss_pred -------------------------CCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCC---CcEEEECCCc
Confidence 1234466777664 58999999999999999999875 4555 6788888533
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc-c---CceE---EEEeCC---hhHHHHHHHHHcCCCC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN-K---EYAN---ARICGA---EKWRKPLAKFLRRPHF 269 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~-g---~~t~---~~~~~~---~~~~~~l~~ll~~~g~ 269 (465)
=.. +.+.+.+.++.. .. .+...|.+..+... | .+.. ..+..+ .+.++.+.++|...|-
T Consensus 463 K~~----------~~~~~~~~l~~~-~~-~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa 530 (667)
T PLN02712 463 KEF----------PRNLFLQHLPQD-FD-ILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGC 530 (667)
T ss_pred cHH----------HHHHHHHhccCC-Cc-eEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCC
Confidence 111 124455555421 12 34466777666541 2 1100 112222 2345666788888887
Q ss_pred eEEec
Q 012349 270 TVWDN 274 (465)
Q Consensus 270 ~v~~s 274 (465)
+++..
T Consensus 531 ~vv~m 535 (667)
T PLN02712 531 RMVEM 535 (667)
T ss_pred EEEEe
Confidence 76654
No 95
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.56 E-value=1.3e-05 Score=81.51 Aligned_cols=222 Identities=20% Similarity=0.241 Sum_probs=130.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
++|+|||.|+||.++|..|... | ++|.+|+|.....+. ...
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G-----~~ViV~~r~~~s~~~--------------------------A~~------- 57 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-G-----VEVVVGVRPGKSFEV--------------------------AKA------- 57 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-c-----CEEEEEECcchhhHH--------------------------HHH-------
Confidence 6899999999999999999988 7 899999875321110 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHH-HHHHhhhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
....+ .+++++++.||+|++++|....+.++. .+.+.+++ ++ ++..+-|+..
T Consensus 58 ----------------------~G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~---Ga-iL~f~hgfni 110 (335)
T PRK13403 58 ----------------------DGFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLRE---GQ-MLLFSHGFNI 110 (335)
T ss_pred ----------------------cCCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCC---CC-EEEECCCcce
Confidence 01222 368889999999999999877778874 57777776 45 5667888875
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEE--EeCCchhh--h--hhccCceEEEEeCC-----hhHHHHHHHHHcCC----
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILY--LGGPNIAS--E--IYNKEYANARICGA-----EKWRKPLAKFLRRP---- 267 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~v--lsGP~~a~--e--v~~g~~t~~~~~~~-----~~~~~~l~~ll~~~---- 267 (465)
. .....+.....+.. =-||++.. + -+.|.|+.+.+-.| .+.+...+...-+.
T Consensus 111 ~-------------~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~iG~~ragv 177 (335)
T PRK13403 111 H-------------FGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKGVGCTRAGV 177 (335)
T ss_pred e-------------cCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHHcCCCceeE
Confidence 4 11222211122221 14566533 1 22455766544222 12333333333322
Q ss_pred ---CCeEEecCChHH--HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhh
Q 012349 268 ---HFTVWDNGDLVT--HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTY 342 (465)
Q Consensus 268 ---g~~v~~s~Di~g--ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~ 342 (465)
.|+-.+.+|+.| .-+||.+--.+-.+.-.+-..+|. +. .++ -.++.|+..+...+.. -|+..+.
T Consensus 178 ~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~-pe--~Ay-fe~~he~kli~dli~e-------~G~~~m~ 246 (335)
T PRK13403 178 IETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYR-PE--IAY-FECLHELKLIVDLMYE-------GGLTNMR 246 (335)
T ss_pred EecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCC-HH--HHH-HHHHHHHHHHHHHHHH-------ccHHHHH
Confidence 344556788888 445777766665555555556663 33 133 3678898877765432 1344444
Q ss_pred hcccCchhHHHHHHH
Q 012349 343 VTLLKGRNAWYGQEL 357 (465)
Q Consensus 343 ~T~~~sRN~~~G~~l 357 (465)
-.| |-...||..+
T Consensus 247 ~~~--S~taeyG~~~ 259 (335)
T PRK13403 247 HSI--SDTAEFGDYV 259 (335)
T ss_pred Hhh--CcHHhcCCcc
Confidence 433 4455566433
No 96
>PLN02712 arogenate dehydrogenase
Probab=98.55 E-value=1.5e-06 Score=96.91 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=97.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|.||..+|..|.+. | ++|..|+|+... +. ... +
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~---------A~~--------------~------- 93 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ-G-----HTVLAHSRSDHS-LA---------ARS--------------L------- 93 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHH-HH---------HHH--------------c-------
Confidence 458999999999999999999988 7 899999997431 10 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHHH-HhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l~-~~l~~~~~~~ivIs~~kG 199 (465)
++...+++++++ .++|+||+|||.+.+.++++++. +++++ +++|+.++ +
T Consensus 94 -------------------------Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~---g~iVvDv~-S 144 (667)
T PLN02712 94 -------------------------GVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKR---NTLFVDVL-S 144 (667)
T ss_pred -------------------------CCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCC---CeEEEECC-C
Confidence 223455666644 56999999999999999999986 56665 67777774 2
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhh----hccCceEEE--EeCCh----hHHHHHHHHHcCCCC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI----YNKEYANAR--ICGAE----KWRKPLAKFLRRPHF 269 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev----~~g~~t~~~--~~~~~----~~~~~l~~ll~~~g~ 269 (465)
+- ..+.+.+.+.++.. .. .+-.-|.+..|. ..+....+. +..++ +.++.+.++|...|-
T Consensus 145 vK---------~~~~~~l~~~l~~~-~~-~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa 213 (667)
T PLN02712 145 VK---------EFAKNLLLDYLPED-FD-IICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGC 213 (667)
T ss_pred Cc---------HHHHHHHHHhcCCC-Ce-EEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCC
Confidence 21 11234455555421 11 233344444432 223321111 11222 245667788988888
Q ss_pred eEEecC
Q 012349 270 TVWDNG 275 (465)
Q Consensus 270 ~v~~s~ 275 (465)
++...+
T Consensus 214 ~v~~ms 219 (667)
T PLN02712 214 KMVEMS 219 (667)
T ss_pred EEEEeC
Confidence 876653
No 97
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.48 E-value=2.2e-06 Score=89.05 Aligned_cols=142 Identities=11% Similarity=0.091 Sum_probs=89.5
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.++|+|||. |.||..+|..|.+..| ++|+.|++..+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~-----~~V~g~D~~d~-------------------------------------- 40 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQ-----LEVIGHDPADP-------------------------------------- 40 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-----CEEEEEcCCcc--------------------------------------
Confidence 479999999 9999999999986423 67888876421
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh---hhccCCCCEEEEeec
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY---WKERITVPVIISLAK 198 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~---l~~~~~~~ivIs~~k 198 (465)
...++++++.+||+||+|||...+.++++++.++ +++ +++|.-++
T Consensus 41 ----------------------------~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~---~~iVtDVg- 88 (370)
T PRK08818 41 ----------------------------GSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAA---GQLWLDVT- 88 (370)
T ss_pred ----------------------------ccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCC---CeEEEECC-
Confidence 0123456678999999999999999999999986 565 56555333
Q ss_pred cccccccccccCCCHHHHHHhHhCCC-----CccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVP-----IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~-----~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
++ |. +.++...+.. .+| +.||... ...++.+..++.....+..+.++++++..|-++..
T Consensus 89 Sv----------K~--~i~~~~~~~~~~fVG~HP---MaG~E~s-~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~ 152 (370)
T PRK08818 89 SI----------KQ--APVAAMLASQAEVVGLHP---MTAPPKS-PTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVY 152 (370)
T ss_pred CC----------cH--HHHHHHHhcCCCEEeeCC---CCCCCCC-cccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 11 10 1222222211 122 2344322 23355544333333344467788999988877755
Q ss_pred cC
Q 012349 274 NG 275 (465)
Q Consensus 274 s~ 275 (465)
.+
T Consensus 153 ~~ 154 (370)
T PRK08818 153 AT 154 (370)
T ss_pred cC
Confidence 43
No 98
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.38 E-value=4.2e-06 Score=84.59 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=69.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
||||+|||+|.||+.+|..++.. | . +|.+++++++.++. .. ..-.+ ......
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~-~-----~~ev~L~D~~~~~~~~---~~----~dl~~---------~~~~~~----- 54 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK-E-----LGDVVLFDIVEGVPQG---KA----LDIAE---------AAPVEG----- 54 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEECCCchhHH---HH----HHHHh---------hhhhcC-----
Confidence 48999999999999999999987 6 4 89999998865432 00 00000 000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------chHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps--------------~~l~~vl~~l~~~l~ 185 (465)
. ...++.++|.+ ++.+||+||+++ |. ..++++++++.++.+
T Consensus 55 ----~------------------~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~ 111 (307)
T PRK06223 55 ----F------------------DTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP 111 (307)
T ss_pred ----C------------------CcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 01355667774 589999999986 33 346777777777664
Q ss_pred ccCCCCEEEEeecccc
Q 012349 186 ERITVPVIISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~ 201 (465)
+.++|..+|-.+
T Consensus 112 ----~~~viv~tNP~d 123 (307)
T PRK06223 112 ----DAIVIVVTNPVD 123 (307)
T ss_pred ----CeEEEEecCcHH
Confidence 467777887654
No 99
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.35 E-value=1.8e-06 Score=88.47 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=70.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-|+|+|||+|.||.++|..|... | ++|..|++++.... .
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~-G-----~~V~~~d~~~~~~~----------------------------~------ 184 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGF-G-----ATITAYDAYPNKDL----------------------------D------ 184 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCChhHhh----------------------------h------
Confidence 347999999999999999999877 7 89999998763110 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-HHH-HHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKE-VFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-l~~-vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+..+.++++++++||+|++++|... +.. +.+.+.+.+++ ++++|+++.|
T Consensus 185 -------------------------~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~---gavlIN~aRG 236 (330)
T PRK12480 185 -------------------------FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKK---GAILVNAARG 236 (330)
T ss_pred -------------------------hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCC---CcEEEEcCCc
Confidence 01123567888999999999999763 333 34556666776 7899999999
Q ss_pred cccc
Q 012349 200 VEAE 203 (465)
Q Consensus 200 i~~~ 203 (465)
-..+
T Consensus 237 ~~vd 240 (330)
T PRK12480 237 AVIN 240 (330)
T ss_pred cccC
Confidence 6654
No 100
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.34 E-value=5.6e-06 Score=83.67 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=98.9
Q ss_pred ceEEEECccH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhh
Q 012349 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (465)
Q Consensus 44 mkIaIIGaGa--------------------mGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~ 103 (465)
|||+|.|+|+ -|.+||..|+++ | |+|++|+|+++.++.- + ..
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA-G-----heV~V~Drnrsa~e~e---~----~e----- 62 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA-G-----HDVVLAEPNREFMSDD---L----WK----- 62 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC-C-----CEEEEEeCChhhhhhh---h----hH-----
Confidence 7899999986 378999999998 8 9999999987543210 0 00
Q ss_pred HHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHHHHH
Q 012349 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISR 182 (465)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~l~~ 182 (465)
.+.. .+..+++++.++++++|+||+++|.. +.+++++.+.+
T Consensus 63 ---------~Lae-----------------------------aGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 63 ---------KVED-----------------------------AGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred ---------HHHH-----------------------------CCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 0100 03445677888999999999999966 57888888887
Q ss_pred hhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHh--CCC------CccEEEEeCCchhhhhhccCceEEEEeCCh
Q 012349 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRAT--GVP------IENILYLGGPNIASEIYNKEYANARICGAE 254 (465)
Q Consensus 183 ~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~l--g~~------~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~ 254 (465)
.+++ ++++|.++ .+++.. +...+++.+ ++. .+|.+|=..|++-.-+..|......--.++
T Consensus 105 ~L~~---GaIVID~S-TIsP~t--------~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~e 172 (341)
T TIGR01724 105 HVPE---NAVICNTC-TVSPVV--------LYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATE 172 (341)
T ss_pred cCCC---CCEEEECC-CCCHHH--------HHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCCH
Confidence 7776 67666554 444431 223333322 211 122222122222211222221111111356
Q ss_pred hHHHHHHHHHcCCCCeEEe-cCChHH
Q 012349 255 KWRKPLAKFLRRPHFTVWD-NGDLVT 279 (465)
Q Consensus 255 ~~~~~l~~ll~~~g~~v~~-s~Di~g 279 (465)
+..+++.++-++.+-..|. ..|+++
T Consensus 173 e~i~~~~el~~~~~~~~~~~pa~l~~ 198 (341)
T TIGR01724 173 EQISKCVELAKSTGKKAYVVPADVTS 198 (341)
T ss_pred HHHHHHHHHHHHhCCCeeecchhhcc
Confidence 7788888888887766554 456655
No 101
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.33 E-value=1.3e-07 Score=90.45 Aligned_cols=127 Identities=23% Similarity=0.358 Sum_probs=84.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
..++.|+|||+|-||+.||+..+.. | ++|.+++++++.+.+..+ . |.+. ++|.-+. .....
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~s-g-----~~V~l~d~~~~aL~~A~~-~----I~~s---l~rvakK--k~~~~--- 69 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATS-G-----LNVWLVDANEDALSRATK-A----ISSS---LKRVAKK--KKADD--- 69 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhc-C-----CceEEecCCHHHHHHHHH-H----HHHH---HHHHHhh--cccCC---
Confidence 3457899999999999999999998 8 899999999987776432 1 2211 1111000 00000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--chHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--TETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps--~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
+...+|++.+ .+..++.++|..+++.+||+||.|+-. +..+.++++|....++ ++++.+.+.
T Consensus 70 ----~~~~~e~v~~---------~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~---~~il~tNTS 133 (298)
T KOG2304|consen 70 ----PVALEEFVDD---------TLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKS---STILATNTS 133 (298)
T ss_pred ----hhhHHHHHHH---------HHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhccc---ceEEeeccc
Confidence 0001122222 123577889999999999999999854 4677889999888776 677777776
Q ss_pred cccc
Q 012349 199 GVEA 202 (465)
Q Consensus 199 Gi~~ 202 (465)
.+..
T Consensus 134 Sl~l 137 (298)
T KOG2304|consen 134 SLSL 137 (298)
T ss_pred ceeH
Confidence 6544
No 102
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.27 E-value=8.9e-06 Score=82.55 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=69.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+|.||+.+|..++.. | + +|.+++++++..+. +. .. .+.+...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-g-----~~~VvlvDi~~~l~~g---~a----~d-------------~~~~~~~---- 51 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-E-----LADLVLLDVVEGIPQG---KA----LD-------------MYEASPV---- 51 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-C-----CCeEEEEeCCCChhHH---HH----Hh-------------hhhhhhc----
Confidence 7999999999999999999987 6 4 79999997652221 00 00 0111100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------chHHHHHHHHHHhhhc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------------~~l~~vl~~l~~~l~~ 186 (465)
. .. ...++.++|.++ +.+||+||+++.. ..+++++++|.++.+
T Consensus 52 ~-~~------------------~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p- 110 (305)
T TIGR01763 52 G-GF------------------DTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP- 110 (305)
T ss_pred c-CC------------------CcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 0 00 024677788876 7999999999973 245566666766643
Q ss_pred cCCCCEEEEeecccc
Q 012349 187 RITVPVIISLAKGVE 201 (465)
Q Consensus 187 ~~~~~ivIs~~kGi~ 201 (465)
+.++|.++|-.+
T Consensus 111 ---~~~iIv~tNP~d 122 (305)
T TIGR01763 111 ---NPIIVVVSNPLD 122 (305)
T ss_pred ---CeEEEEecCcHH
Confidence 568888888654
No 103
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.21 E-value=1.8e-05 Score=84.64 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCCcccchhhhh
Q 012349 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILK 133 (465)
Q Consensus 54 mGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~ 133 (465)
||..||..|+++ | ++|.+|+|+++.++.+ .+..+ ++
T Consensus 1 MG~~mA~nL~~~-G-----~~V~v~nrt~~~~~~l--------~~~~g-------------~~----------------- 36 (459)
T PRK09287 1 MGKNLALNIASH-G-----YTVAVYNRTPEKTDEF--------LAEEG-------------KG----------------- 36 (459)
T ss_pred CcHHHHHHHHhC-C-----CeEEEECCCHHHHHHH--------HHhhC-------------CC-----------------
Confidence 899999999999 8 9999999998766541 11000 00
Q ss_pred ccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecccccccccccc
Q 012349 134 DGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPR 209 (465)
Q Consensus 134 ~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~ 209 (465)
.++....+++++++. +|+||++||.. .++++++.+.+++.+ +.++|-+++.....+
T Consensus 37 ------------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~---GdiiID~gn~~~~~t----- 96 (459)
T PRK09287 37 ------------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEK---GDIIIDGGNSNYKDT----- 96 (459)
T ss_pred ------------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCC---CCEEEECCCCCHHHH-----
Confidence 024556778887764 89999999965 789999999998887 678888876654432
Q ss_pred CCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCe
Q 012349 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 210 ~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~ 270 (465)
....+.+++ .|.......|..||.-|. .| + .++++++++..+.++.+|+..+-+
T Consensus 97 -~~~~~~l~~-~Gi~fvdapVSGG~~gA~---~G-~-siM~GG~~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 97 -IRREKELAE-KGIHFIGMGVSGGEEGAL---HG-P-SIMPGGQKEAYELVAPILEKIAAK 150 (459)
T ss_pred -HHHHHHHHh-cCCeEEecCCCCCHHHHh---cC-C-EEEEeCCHHHHHHHHHHHHHHhhh
Confidence 111122222 232111122344443333 34 3 457888888888888888865433
No 104
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.20 E-value=1.3e-05 Score=81.87 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=33.8
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.+++||+|||+|.||+++|..++.. |. .+|.|+|++++.+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~-gl----~~i~LvDi~~~~~ 43 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLK-NL----GDVVLFDIVKNIP 43 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeCCCchh
Confidence 3558999999999999999999887 62 3699999998754
No 105
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.18 E-value=7.8e-05 Score=76.02 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=72.1
Q ss_pred CeEEecC--HHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhC
Q 012349 147 PLKVVTN--LQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222 (465)
Q Consensus 147 ~i~~t~d--l~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg 222 (465)
+++++++ ..+++++||+||.|||.. ....++.++.+.+++ ++++.|.+.++... .|.+.+.
T Consensus 64 ~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~---~~ilaSntS~~~~~------------~la~~~~ 128 (314)
T PRK08269 64 RIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDA---DAIIASTTSTFLVT------------DLQRHVA 128 (314)
T ss_pred CeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCC---CcEEEEccccCCHH------------HHHhhcC
Confidence 5777654 667889999999999975 567788889888887 78887777666553 3555454
Q ss_pred CCCccEEE--EeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 223 VPIENILY--LGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 223 ~~~~~i~v--lsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
.+ .++.. ...|-+.. ....++. ..+++..+.+..++...|..+....|.-|
T Consensus 129 ~p-~r~~g~Hf~~Pp~~~-----~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G 183 (314)
T PRK08269 129 HP-ERFLNAHWLNPAYLM-----PLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG 183 (314)
T ss_pred Cc-ccEEEEecCCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 33 22211 11222111 1111221 23667788899999988888777777655
No 106
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.14 E-value=2.6e-05 Score=79.60 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=70.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+.+||+|||+|.+|..+|..++.. |. .++.|+|++++.++. +. +.-.+ .....
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-~~----~~l~L~Di~~~~~~g---~~----lDl~~-----------~~~~~---- 56 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-NL----GDVVLYDVIKGVPQG---KA----LDLKH-----------FSTLV---- 56 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-CC----CeEEEEECCCccchh---HH----HHHhh-----------hcccc----
Confidence 457999999999999999999887 62 479999998865432 10 11110 00000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------chHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps--------------~~l~~vl~~l~~~l~ 185 (465)
+. ...+..++|.+ ++.+||+||++. |. ..++++++++.++.+
T Consensus 57 ~~---------------------~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p 114 (319)
T PTZ00117 57 GS---------------------NINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP 114 (319)
T ss_pred CC---------------------CeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 00 01355567876 689999999999 33 236677777777754
Q ss_pred ccCCCCEEEEeecccc
Q 012349 186 ERITVPVIISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~ 201 (465)
+.+++.++|-.+
T Consensus 115 ----~a~vivvsNP~d 126 (319)
T PTZ00117 115 ----NAFVICVTNPLD 126 (319)
T ss_pred ----CeEEEEecChHH
Confidence 466777777553
No 107
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.13 E-value=1.1e-05 Score=82.88 Aligned_cols=96 Identities=20% Similarity=0.320 Sum_probs=67.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-|+|+|||+|.||.++|..|++..| .+|..|+++.... .+.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g-----~~V~~~d~~~~~~----------------------------~~~----- 186 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYG-----SDVVAYDPFPNAK----------------------------AAT----- 186 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCccHh----------------------------HHh-----
Confidence 34799999999999999999954324 6777777654210 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHH--HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF--EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl--~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+...++++++++++|+|++++|.......+ +.+.+.+++ ++++|.+++|
T Consensus 187 -------------------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~---gailIN~sRG 238 (332)
T PRK08605 187 -------------------------YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK---GAVFVNCARG 238 (332)
T ss_pred -------------------------hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCC---CcEEEECCCC
Confidence 1123457888899999999999976543333 334555666 7899999999
Q ss_pred cccc
Q 012349 200 VEAE 203 (465)
Q Consensus 200 i~~~ 203 (465)
...+
T Consensus 239 ~~vd 242 (332)
T PRK08605 239 SLVD 242 (332)
T ss_pred cccC
Confidence 7665
No 108
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.13 E-value=4.4e-06 Score=88.46 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=56.7
Q ss_pred ceEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 44 LRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 44 mkIaIIGaGamGsalA~--~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+||+|||+|+||.+++. .++.... + .+++|.||+++++.++.+... ++ ++++..
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~-~-~g~eV~L~Did~e~l~~~~~~-----~~-------------~~~~~~---- 56 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE-L-SGSTIALMDIDEERLETVEIL-----AK-------------KIVEEL---- 56 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC-C-CCCEEEEECCCHHHHHHHHHH-----HH-------------HHHHhc----
Confidence 58999999999999776 3432100 0 127999999999776642211 11 112111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHH
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKE 175 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~ 175 (465)
.. ..++.+|+|+++++.+||+||+++++...+.
T Consensus 57 ---~~------------------~~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~ 89 (423)
T cd05297 57 ---GA------------------PLKIEATTDRREALDGADFVINTIQVGGHEY 89 (423)
T ss_pred ---CC------------------CeEEEEeCCHHHHhcCCCEEEEeeEecCccc
Confidence 00 0157789999999999999999999654433
No 109
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.12 E-value=3.1e-05 Score=69.80 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=75.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+ |.+|+++|..|... +.. .++.|++++++.++... ++-. +....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-~l~---~ei~L~D~~~~~~~g~a-------~Dl~------------~~~~~----- 52 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-GLA---DEIVLIDINEDKAEGEA-------LDLS------------HASAP----- 52 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-TTS---SEEEEEESSHHHHHHHH-------HHHH------------HHHHG-----
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CceEEeccCcccceeee-------hhhh------------hhhhh-----
Confidence 79999999 99999999999988 632 57999999976544211 1100 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Ccc--------------hHHHHHHHHHHhhhc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKE 186 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps~--------------~l~~vl~~l~~~l~~ 186 (465)
. . .+..+..+..+++++||+||++. |.. .++++.+++.++.+
T Consensus 53 ~-~--------------------~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p- 110 (141)
T PF00056_consen 53 L-P--------------------SPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP- 110 (141)
T ss_dssp S-T--------------------EEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-
T ss_pred c-c--------------------cccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-
Confidence 0 0 02344445556799999999987 221 35555566665543
Q ss_pred cCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 187 ~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++.++|-++. +..++++..+.+..+
T Consensus 111 ---~~~vivvtNPvd~----------~t~~~~~~s~~~~~k 138 (141)
T PF00056_consen 111 ---DAIVIVVTNPVDV----------MTYVAQKYSGFPPNK 138 (141)
T ss_dssp ---TSEEEE-SSSHHH----------HHHHHHHHHTSSGGG
T ss_pred ---ccEEEEeCCcHHH----------HHHHHHHhhCcCccc
Confidence 5788888876653 346677776654333
No 110
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.09 E-value=2.5e-05 Score=71.76 Aligned_cols=94 Identities=34% Similarity=0.449 Sum_probs=65.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~-~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.++|+|||.|+.|.+.|..|.++ | .+|++-.|... ..++.+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS-G-----~~V~Vglr~~s~s~~~A~-------------------------------- 45 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS-G-----VNVIVGLREGSASWEKAK-------------------------------- 45 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC-C------EEEEEE-TTCHHHHHHH--------------------------------
T ss_pred CCEEEEECCChHHHHHHHHHHhC-C-----CCEEEEecCCCcCHHHHH--------------------------------
Confidence 36899999999999999999998 8 89998888764 222100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+| .+ ..+..|+++.+|+|++.+|.....++. ++|.|++++ ++ .+..+-|+
T Consensus 46 -----------~~G------------f~-v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~---G~-~L~fahGf 97 (165)
T PF07991_consen 46 -----------ADG------------FE-VMSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKP---GA-TLVFAHGF 97 (165)
T ss_dssp -----------HTT-------------E-CCEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-T---T--EEEESSSH
T ss_pred -----------HCC------------Ce-eccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCC---CC-EEEeCCcc
Confidence 011 22 235678899999999999999999998 889999997 55 45677777
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 98 ni 99 (165)
T PF07991_consen 98 NI 99 (165)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 111
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.87 E-value=0.00011 Score=74.22 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=65.0
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
|+|||+|.||..+|..++.. | . +|.++|++++..+. ..+ +.. + ..... ..
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~-----l~eV~L~Di~e~~~~g---~~~-dl~---~-----------~~~~~----~~- 51 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-E-----LGDVVLLDIVEGLPQG---KAL-DIS---Q-----------AAPIL----GS- 51 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-C-----CcEEEEEeCCCcHHHH---HHH-HHH---H-----------hhhhc----CC-
Confidence 68999999999999999987 6 4 89999999764321 100 000 0 00000 00
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------chHHHHHHHHHHhhhccC
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------------~~l~~vl~~l~~~l~~~~ 188 (465)
...+..++|.+ ++.+||+||+++-. ..++++++++.++.+
T Consensus 52 --------------------~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p--- 107 (300)
T cd01339 52 --------------------DTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAP--- 107 (300)
T ss_pred --------------------CeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 01456667764 58999999997731 135667777777664
Q ss_pred CCCEEEEeecccc
Q 012349 189 TVPVIISLAKGVE 201 (465)
Q Consensus 189 ~~~ivIs~~kGi~ 201 (465)
+.++|..+|-.+
T Consensus 108 -~~~iIv~sNP~d 119 (300)
T cd01339 108 -NAIVIVVTNPLD 119 (300)
T ss_pred -CeEEEEecCcHH
Confidence 456677776543
No 112
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.86 E-value=0.0002 Score=70.90 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=69.7
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 46 IaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
|+|||+ |.||..+|..|+.. |.+. ..+|.|+|++++.++....+ ++..- ....
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-~~~~-~~el~L~D~~~~~l~~~~~d-----l~~~~----------~~~~--------- 54 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-SVLL-AIELVLYDIDEEKLKGVAMD-----LQDAV----------EPLA--------- 54 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-CCCc-ceEEEEEeCCcccchHHHHH-----HHHhh----------hhcc---------
Confidence 689999 99999999999987 5211 15899999988665531111 11100 0000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------chHHHHHHHHHHhhhccC
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------------~~l~~vl~~l~~~l~~~~ 188 (465)
...+.+++|+.+++.+||+||++.-. ..++++++++.++.+
T Consensus 55 --------------------~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p--- 111 (263)
T cd00650 55 --------------------DIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP--- 111 (263)
T ss_pred --------------------CcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 01567788888889999999996622 136666777776653
Q ss_pred CCCEEEEeecccc
Q 012349 189 TVPVIISLAKGVE 201 (465)
Q Consensus 189 ~~~ivIs~~kGi~ 201 (465)
+.+++..+|-.+
T Consensus 112 -~a~~i~~tNP~d 123 (263)
T cd00650 112 -DAWIIVVSNPVD 123 (263)
T ss_pred -CeEEEEecCcHH
Confidence 567777776554
No 113
>PLN02602 lactate dehydrogenase
Probab=97.83 E-value=0.00034 Score=72.37 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=43.9
Q ss_pred eEeecchhHHHhHHHhhhhcCCCCCC-----ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 18 IHHTNGSLEERLDELRRLMGKAEGDP-----LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+|-.||-+. +..++--+|-+....| +||+|||+|.+|+++|..++.. +.. .++.|+|.+++.++
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~m~~~~~~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~LiDi~~~~~~ 76 (350)
T PLN02602 8 SSLGPGGLD-LSQAFFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQ-DLA---DELALVDVNPDKLR 76 (350)
T ss_pred cccccchhh-hhhhhhhcccccccccccCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCCCchhh
Confidence 344666665 5554444333333312 6999999999999999999877 632 47999999886543
No 114
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.81 E-value=0.00014 Score=64.11 Aligned_cols=122 Identities=20% Similarity=0.176 Sum_probs=73.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
|||+|+|+ |.||..++..+.+..+ ++ |-.++++++.... +.+- .+.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-----~~lv~~v~~~~~~~~g---~d~g------------------~~~~~---- 50 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-----FELVGAVDRKPSAKVG---KDVG------------------ELAGI---- 50 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-----EEEEEEEETTTSTTTT---SBCH------------------HHCTS----
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-----cEEEEEEecCCccccc---chhh------------------hhhCc----
Confidence 79999999 9999999999998524 55 4456666521110 0000 01110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. ..++.+++|+++++..+|++|-++-+..+.+.++....+ +..+|+.+.|+.
T Consensus 51 ---~-------------------~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~------g~~~ViGTTG~~ 102 (124)
T PF01113_consen 51 ---G-------------------PLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALKH------GVPLVIGTTGFS 102 (124)
T ss_dssp ---S-------------------T-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHH------T-EEEEE-SSSH
T ss_pred ---C-------------------CcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHhC------CCCEEEECCCCC
Confidence 0 014667899999998999999999777776666665443 457888888997
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCch
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI 236 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~ 236 (465)
.+.. +.+++.-. .+.++..|||
T Consensus 103 ~~~~---------~~l~~~a~----~~~vl~a~Nf 124 (124)
T PF01113_consen 103 DEQI---------DELEELAK----KIPVLIAPNF 124 (124)
T ss_dssp HHHH---------HHHHHHTT----TSEEEE-SSS
T ss_pred HHHH---------HHHHHHhc----cCCEEEeCCC
Confidence 6521 34554332 2467788886
No 115
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.80 E-value=0.00022 Score=72.39 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=33.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+||+|||+|.+|+++|..|+.. |.. ++|.+++++++.++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~-g~~---~ei~l~D~~~~~~~ 39 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ-GIA---DELVLIDINEEKAE 39 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence 4899999999999999999987 631 48999999987654
No 116
>PRK15076 alpha-galactosidase; Provisional
Probab=97.79 E-value=0.00016 Score=76.91 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=52.3
Q ss_pred CceEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~--~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
|+||+|||+|++|.+.+. .++...+ +. +.+|.|+|++++.++.... .++.. +...
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~-l~-~~evvLvDid~er~~~~~~-----l~~~~-------------~~~~--- 57 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPA-LR-DAEIALMDIDPERLEESEI-----VARKL-------------AESL--- 57 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCcc-CC-CCEEEEECCCHHHHHHHHH-----HHHHH-------------HHhc---
Confidence 479999999999977766 5542212 11 2589999999876653211 11110 1100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP 169 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp 169 (465)
+. ...+..|+|..+++.+||+||.++-
T Consensus 58 -~~---------------------~~~i~~ttD~~eal~dADfVv~ti~ 84 (431)
T PRK15076 58 -GA---------------------SAKITATTDRREALQGADYVINAIQ 84 (431)
T ss_pred -CC---------------------CeEEEEECCHHHHhCCCCEEeEeee
Confidence 00 0147788998899999999999873
No 117
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.77 E-value=0.00014 Score=72.23 Aligned_cols=82 Identities=22% Similarity=0.243 Sum_probs=58.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
||||+|||+|.||..++..+.+. + . +.+ +.+|+++++..+.+ .+ ..
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~-~-~--~~elv~v~d~~~~~a~~~---------a~----------------~~---- 47 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG-R-I--NAELYAFYDRNLEKAENL---------AS----------------KT---- 47 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC-C-C--CeEEEEEECCCHHHHHHH---------HH----------------hc----
Confidence 47999999999999999998765 2 0 133 66788887543320 00 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
.....+|+++.+.++|+|++|+|++...+++.++..
T Consensus 48 -------------------------~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~ 83 (265)
T PRK13304 48 -------------------------GAKACLSIDELVEDVDLVVECASVNAVEEVVPKSLE 83 (265)
T ss_pred -------------------------CCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence 123456777777889999999999988888776654
No 118
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.76 E-value=0.00025 Score=72.05 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|||+|||+|.+|+++|..|+.+ |.. ++|.+++++++.++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~-g~~---~ev~l~D~~~~~~~ 39 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR-GLA---SEIVLVDINKAKAE 39 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCC---CEEEEEECCchhhh
Confidence 6999999999999999999988 621 58999999876543
No 119
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=97.70 E-value=0.00031 Score=68.70 Aligned_cols=165 Identities=18% Similarity=0.131 Sum_probs=102.1
Q ss_pred CceEEEECccHH--------------------HHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhh
Q 012349 43 PLRIVGVGAGAW--------------------GSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102 (465)
Q Consensus 43 ~mkIaIIGaGam--------------------GsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~ 102 (465)
+|||+|.|+|+- |+.+|..+|++ | |+|.|.+.+.+..+. +
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA-G-----HDVVLaePn~d~~dd---~----------- 60 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA-G-----HDVVLAEPNRDIMDD---E----------- 60 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc-C-----CcEEeecCCccccCH---H-----------
Confidence 489999999862 77899999999 8 999999988764442 1
Q ss_pred hHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHHHH
Q 012349 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEIS 181 (465)
Q Consensus 103 ~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~l~ 181 (465)
+.+.++ | ..+++++|-.++++.+++.++.||-- .+-.+.+.|.
T Consensus 61 ----------~w~~ve---------------d-----------AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~ 104 (340)
T COG4007 61 ----------HWKRVE---------------D-----------AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREIL 104 (340)
T ss_pred ----------HHHHHH---------------h-----------cCcEEecCchhhhhcceEEEEecccchhhHHHHHHHH
Confidence 111111 1 25777777778899999999999976 8889999999
Q ss_pred HhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhH-------hCCC-CccEEEEeCCchhhhhhccCceEEEEeCC
Q 012349 182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRA-------TGVP-IENILYLGGPNIASEIYNKEYANARICGA 253 (465)
Q Consensus 182 ~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~-------lg~~-~~~i~vlsGP~~a~ev~~g~~t~~~~~~~ 253 (465)
+++++ +++| +.+=.+++- -+...++.. .|.. .+|.++=.-|++-.-+..|+.+...--..
T Consensus 105 ~hvpE---gAVi-cnTCT~sp~--------vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elAT 172 (340)
T COG4007 105 EHVPE---GAVI-CNTCTVSPV--------VLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELAT 172 (340)
T ss_pred hhCcC---CcEe-cccccCchh--------HHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeecc
Confidence 99987 5644 333233321 011112222 2211 12222212233322222233222211234
Q ss_pred hhHHHHHHHHHcCCCCeEEecC
Q 012349 254 EKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 254 ~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
++..+++.++.++.|..+|+.+
T Consensus 173 eEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 173 EEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred HHHHHHHHHHHHhcCCceEecC
Confidence 6788999999999998888753
No 120
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=97.70 E-value=0.00028 Score=61.74 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcccCC----CcchHHHHHHHHHHHHHHHHHHhCCCcchh--ccCchhhhhhcccCch
Q 012349 276 DLVTHEVMGGLKNVYAIGAGMVAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKL--AGPLLADTYVTLLKGR 349 (465)
Q Consensus 276 Di~gve~~galKNviAia~Gi~~gl~~g----~~n~~a~li~~~~~E~~~l~~a~G~~~~t~--~g~glgDl~~T~~~sR 349 (465)
|+.+..|.+.+.|....+...+.+..+| ++..+ .++...+.|+..++++.|.....- .. .+.++.... ...
T Consensus 1 di~~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~-~~~~~l~~E~~~va~a~G~~l~~~~~~~-~~~~~~~~~-~~~ 77 (125)
T PF08546_consen 1 DIQRERWEKLIFNAAINPLTALTGCTNGELLENPEAR-ELIRALMREVIAVARALGIPLDPDDLEE-AIERLIRST-PDN 77 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHH-HHHHHHHHHHHHHHHHTTSS--HHHHHH-HHHHHHHCT-TTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHH-HHHHHHHHHHHHHHHHhhccCcHHHHHH-HHHHHHHhc-CCc
Confidence 7889999999999655555554444332 23333 789999999999999999753211 00 111111111 111
Q ss_pred hHHHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 350 NAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 350 N~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
--++-+++.+|+.+ .+|.+.. .++++++++|+ + +|.++++|++++.
T Consensus 78 ~~SM~~D~~~gr~t-----------Eid~i~G--~vv~~a~~~gv--------------~-~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 78 RSSMLQDIEAGRPT-----------EIDYING--YVVRLAKKHGV--------------P-TPVNETIYALVKA 123 (125)
T ss_dssp --HHHHHHHTTB-------------SHHHTHH--HHHHHHHHTT------------------HHHHHHHHHHHH
T ss_pred cccHHHHHHHcccc-----------cHHHHHH--HHHHHHHHHCC--------------C-CcHHHHHHHHHHH
Confidence 12344455555432 2333333 79999999995 6 8999999999863
No 121
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.70 E-value=9.4e-05 Score=70.53 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcC
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYG 67 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G 67 (465)
|||+|||+ |.||..++..|.++ |
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-G 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-C
Confidence 69999999 99999999999877 6
No 122
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.68 E-value=0.0028 Score=63.61 Aligned_cols=200 Identities=26% Similarity=0.314 Sum_probs=117.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh-hhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~-~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+||+|||.|+=|.+=|.-|.++ | .+|++=-|.... +++. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS-G-----lnViiGlr~g~~s~~kA--------~------------------------- 59 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS-G-----LNVIIGLRKGSSSWKKA--------K------------------------- 59 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc-C-----CcEEEEecCCchhHHHH--------H-------------------------
Confidence 6999999999999999999998 8 788776665432 1110 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHH-HHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.+ +.+ ..+.+||++.||+|++-+|.....++.+ +|.|.+++ +. .+..+-|+.
T Consensus 60 ----------~d------------Gf~-V~~v~ea~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~---G~-aL~FaHGfN 112 (338)
T COG0059 60 ----------ED------------GFK-VYTVEEAAKRADVVMILLPDEQQKEVYEKEIAPNLKE---GA-ALGFAHGFN 112 (338)
T ss_pred ----------hc------------CCE-eecHHHHhhcCCEEEEeCchhhHHHHHHHHhhhhhcC---Cc-eEEeccccc
Confidence 01 222 2456789999999999999999999998 89999987 44 566777876
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccE--EEEeCCchhh--h--hhccCceEEEEeCC-----hhHHHHHHHHHc--C--
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENI--LYLGGPNIAS--E--IYNKEYANARICGA-----EKWRKPLAKFLR--R-- 266 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i--~vlsGP~~a~--e--v~~g~~t~~~~~~~-----~~~~~~l~~ll~--~-- 266 (465)
.-- ....+.....+ +.=-||++.. + -+.|.|+.+.+-.| .+.+...++..- +
T Consensus 113 ihf-------------~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~AkgiGg~RaG 179 (338)
T COG0059 113 IHF-------------GLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAYAKGIGGTRAG 179 (338)
T ss_pred eec-------------ceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHHHHhcCCCccc
Confidence 531 11111111111 1124666533 1 22455776544222 122333333332 1
Q ss_pred ---CCCeEEecCChHHHH--HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHh
Q 012349 267 ---PHFTVWDNGDLVTHE--VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLL 326 (465)
Q Consensus 267 ---~g~~v~~s~Di~gve--~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~ 326 (465)
..|+-.+.+|+.|-+ +||-+--.+-.+.-.+-..+|. |. .+++ .++.|+..+...+
T Consensus 180 vieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~-PE--~Ayf-E~lhE~klIvdLi 240 (338)
T COG0059 180 VIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQ-PE--LAYF-ECLHELKLIVDLI 240 (338)
T ss_pred eEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCC-HH--HHHH-HHHHHHHHHHHHH
Confidence 235666678999843 4665554443333334444442 32 1333 5666777776654
No 123
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.64 E-value=0.0016 Score=69.02 Aligned_cols=100 Identities=26% Similarity=0.338 Sum_probs=69.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
++|+|||.|+.|.+-|..|... | ++|++--|.. .++. ++ ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS-G-----vnVvvglr~~-~id~----------~~------------~s~~kA------ 81 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKE-AIAE----------KR------------ASWRKA------ 81 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc-c-----ceeEEecccc-cccc----------cc------------chHHHH------
Confidence 7999999999999988888877 7 7887655543 1110 00 000000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
..+| ..+ .+.++++..||+|++.+|...-..+.+++.+++++ +. .+..+-|+...
T Consensus 82 --------~~dG------------F~v-~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~---Ga-~L~fsHGFni~ 136 (487)
T PRK05225 82 --------TENG------------FKV-GTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQ---GA-ALGYSHGFNIV 136 (487)
T ss_pred --------HhcC------------Ccc-CCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCC---CC-EEEecCCceee
Confidence 0012 222 45788899999999999988888888999999987 44 56777787653
No 124
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.59 E-value=0.00083 Score=68.50 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=33.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+||+|||+|.+|+++|..|+.. |.. .++.|+|.+++.++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~-~~~---~el~LiD~~~~~~~ 42 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAK-GLA---DELVLVDVVEDKLK 42 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHH
Confidence 47999999999999999999877 632 57999999876443
No 125
>PRK07574 formate dehydrogenase; Provisional
Probab=97.55 E-value=0.00041 Score=72.64 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=67.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|+||..+|..|..- | .+|..|+|.....+. ...
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G-----~~V~~~dr~~~~~~~--------------------------~~~------ 233 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-D-----VKLHYTDRHRLPEEV--------------------------EQE------ 233 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCchhh--------------------------Hhh------
Confidence 47999999999999999999866 6 789999987521110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH-HHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE-EISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.++....+++++++.||+|++++| ...++.++. +....+++ ++++|.++-|=
T Consensus 234 -----------------------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 287 (385)
T PRK07574 234 -----------------------LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR---GSYLVNTARGK 287 (385)
T ss_pred -----------------------cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCC---CcEEEECCCCc
Confidence 022333578899999999999999 456777763 34445666 78899888774
Q ss_pred c
Q 012349 201 E 201 (465)
Q Consensus 201 ~ 201 (465)
.
T Consensus 288 i 288 (385)
T PRK07574 288 I 288 (385)
T ss_pred h
Confidence 3
No 126
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.54 E-value=0.00072 Score=58.11 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=63.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+||+|||+|.||......+.+. . ++.++ -+++++++..+.. .++ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~-~---~~~~v~~v~d~~~~~~~~~--------~~~--------------~-------- 46 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS-S---PDFEVVAVCDPDPERAEAF--------AEK--------------Y-------- 46 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT-T---TTEEEEEEECSSHHHHHHH--------HHH--------------T--------
T ss_pred CEEEEECCcHHHHHHHHHHHhc-C---CCcEEEEEEeCCHHHHHHH--------HHH--------------h--------
Confidence 5899999999999999888766 2 12454 4788887543321 000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
++...+|.++.+. +.|+|++++|+....+.+...... +. -|.+-|-+
T Consensus 47 ------------------------~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~------g~-~v~~EKP~ 95 (120)
T PF01408_consen 47 ------------------------GIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEA------GK-HVLVEKPL 95 (120)
T ss_dssp ------------------------TSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHT------TS-EEEEESSS
T ss_pred ------------------------cccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHc------CC-EEEEEcCC
Confidence 2335677888776 789999999999888887776542 23 34577766
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 96 ~~ 97 (120)
T PF01408_consen 96 AL 97 (120)
T ss_dssp SS
T ss_pred cC
Confidence 44
No 127
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.54 E-value=0.00039 Score=71.47 Aligned_cols=94 Identities=22% Similarity=0.254 Sum_probs=67.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|++|..+|..|... | .+|..|+|+..... ...
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~---------------------------~~~----- 190 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGF-G-----MRILYYSRTRKPEA---------------------------EKE----- 190 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCChhh---------------------------HHH-----
Confidence 347999999999999999999866 6 78999998753110 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
. ... ..+++++++.||+|++++|. ..++.++ ++....+++ ++++|.++-|
T Consensus 191 ----~--------------------~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~---ga~lIN~aRg 242 (333)
T PRK13243 191 ----L--------------------GAE-YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKP---TAILVNTARG 242 (333)
T ss_pred ----c--------------------CCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECcCc
Confidence 0 122 24678889999999999995 4566665 345555666 6888888877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
-.
T Consensus 243 ~~ 244 (333)
T PRK13243 243 KV 244 (333)
T ss_pred hh
Confidence 43
No 128
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=0.00072 Score=65.73 Aligned_cols=142 Identities=19% Similarity=0.215 Sum_probs=90.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|+|.+||.|.||..+...|.+. | |+|..|+++++.++++..+.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~-g-----hdvV~yD~n~~av~~~~~~g------------------------------- 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG-G-----HDVVGYDVNQTAVEELKDEG------------------------------- 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHhcC-------------------------------
Confidence 7899999999999999999998 7 99999999998776532111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHH---HhcCCCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~e---al~~aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+..+++++ -+...-.|.+-||.- .+.++++++++.+.+ +.+||---|.
T Consensus 44 ------------------------a~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~---GDivIDGGNS 96 (300)
T COG1023 44 ------------------------ATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSA---GDIVIDGGNS 96 (300)
T ss_pred ------------------------CccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCC---CCEEEECCcc
Confidence 011122222 245567899999987 899999999999987 5667654433
Q ss_pred ccccccccccCCCHHHHHHh---H--hCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcC
Q 012349 200 VEAELEAVPRIITPTQMINR---A--TGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRR 266 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e---~--lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~ 266 (465)
--. +.+++ . -|.....+..-.|+-=++ +| + ..+++++++..+.+..+|..
T Consensus 97 ~y~------------Ds~rr~~~l~~kgi~flD~GTSGG~~G~~---~G-~-~lMiGG~~~a~~~~~pif~~ 151 (300)
T COG1023 97 NYK------------DSLRRAKLLAEKGIHFLDVGTSGGVWGAE---RG-Y-CLMIGGDEEAVERLEPIFKA 151 (300)
T ss_pred chH------------HHHHHHHHHHhcCCeEEeccCCCCchhhh---cC-c-eEEecCcHHHHHHHHHHHHh
Confidence 222 12221 1 121111122222221111 22 2 24678888888899999875
No 129
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.53 E-value=0.00071 Score=68.97 Aligned_cols=94 Identities=27% Similarity=0.386 Sum_probs=67.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|+|||.|+||..+|..|..- | .+|..|++..... ++..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af-G-----~~V~~~~~~~~~~-----------------------------~~~~---- 176 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW-G-----FPLRCWSRSRKSW-----------------------------PGVQ---- 176 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCCCCC-----------------------------CCce----
Confidence 37999999999999999999866 7 8999998865311 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi 200 (465)
......++++++++||+|++++|. ..++.++. +....+++ ++++|.+.-|=
T Consensus 177 ------------------------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 229 (312)
T PRK15469 177 ------------------------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPD---GAYLLNLARGV 229 (312)
T ss_pred ------------------------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCcc
Confidence 001124678889999999999994 46676664 24444565 68899988884
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 230 vV 231 (312)
T PRK15469 230 HV 231 (312)
T ss_pred cc
Confidence 33
No 130
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.52 E-value=0.00068 Score=68.96 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=68.5
Q ss_pred hHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhh
Q 012349 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108 (465)
Q Consensus 29 ~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~ 108 (465)
++..+..++.. ..++|+|||+|.||..++..|... | .++|++++|++++...+ .++
T Consensus 166 v~~a~~~~~~l--~~~~V~ViGaG~iG~~~a~~L~~~-g----~~~V~v~~r~~~ra~~l--------a~~--------- 221 (311)
T cd05213 166 VELAEKIFGNL--KGKKVLVIGAGEMGELAAKHLAAK-G----VAEITIANRTYERAEEL--------AKE--------- 221 (311)
T ss_pred HHHHHHHhCCc--cCCEEEEECcHHHHHHHHHHHHHc-C----CCEEEEEeCCHHHHHHH--------HHH---------
Confidence 34455555543 448999999999999999999875 4 26899999987644321 000
Q ss_pred hcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccC
Q 012349 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERI 188 (465)
Q Consensus 109 ~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~ 188 (465)
+. . .....+++.+++.++|+||.|||+......++.+......
T Consensus 222 -----~g-------~-----------------------~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~-- 264 (311)
T cd05213 222 -----LG-------G-----------------------NAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSG-- 264 (311)
T ss_pred -----cC-------C-----------------------eEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCC--
Confidence 00 0 0111234566788999999999988775555554322211
Q ss_pred CCCEEEEeec
Q 012349 189 TVPVIISLAK 198 (465)
Q Consensus 189 ~~~ivIs~~k 198 (465)
++.+++-++.
T Consensus 265 ~~~~viDlav 274 (311)
T cd05213 265 KPRLIVDLAV 274 (311)
T ss_pred CCeEEEEeCC
Confidence 1356666653
No 131
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.51 E-value=0.00051 Score=68.60 Aligned_cols=82 Identities=22% Similarity=0.279 Sum_probs=56.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHh-cCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
.++||+|||+|.||..++..|.+. .+ .++. +|+|+++..+. ... .+.
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~-----~el~aV~dr~~~~a~~---------~a~-------------~~g---- 53 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPG-----LTLSAVAVRDPQRHAD---------FIW-------------GLR---- 53 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCC-----eEEEEEECCCHHHHHH---------HHH-------------hcC----
Confidence 348999999999999999999762 12 5654 78888754332 000 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHH
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~ 181 (465)
.....+++++.+.++|+|++|+|.....++.....
T Consensus 54 ---------------------------~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL 88 (271)
T PRK13302 54 ---------------------------RPPPVVPLDQLATHADIVVEAAPASVLRAIVEPVL 88 (271)
T ss_pred ---------------------------CCcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHH
Confidence 01234567777788999999999998887776654
No 132
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.48 E-value=0.0012 Score=67.33 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=33.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..+||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~-~~~---~el~L~D~~~~~~~ 45 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQ-GIA---DELVIIDINKEKAE 45 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCCchhH
Confidence 347999999999999999999987 632 37999999876544
No 133
>PLN03139 formate dehydrogenase; Provisional
Probab=97.46 E-value=0.00057 Score=71.57 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.||..+|..|..- | .+|..|+|.....+. ...
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~af-G-----~~V~~~d~~~~~~~~--------------------------~~~----- 240 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPF-N-----CNLLYHDRLKMDPEL--------------------------EKE----- 240 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------Hhh-----
Confidence 347999999999999999999865 6 789999886421110 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
.++....++++++..+|+|++++| ...++.++. ++...+++ ++++|.+.-|
T Consensus 241 ------------------------~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG 293 (386)
T PLN03139 241 ------------------------TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK---GVLIVNNARG 293 (386)
T ss_pred ------------------------cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCC---CeEEEECCCC
Confidence 022334578898999999999999 456777663 34455665 6888888877
Q ss_pred c
Q 012349 200 V 200 (465)
Q Consensus 200 i 200 (465)
=
T Consensus 294 ~ 294 (386)
T PLN03139 294 A 294 (386)
T ss_pred c
Confidence 3
No 134
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=97.46 E-value=0.0005 Score=64.22 Aligned_cols=97 Identities=23% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+...++|+|||.|.+|.++|..+..- | .+|..|+|....... ...
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~~~~--------------------------~~~--- 77 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAF-G-----MRVIGYDRSPKPEEG--------------------------ADE--- 77 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHT-T------EEEEEESSCHHHHH--------------------------HHH---
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecC-C-----ceeEEecccCChhhh--------------------------ccc---
Confidence 34457999999999999999999865 7 899999998742110 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH-HHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl-~~l~~~l~~~~~~~ivIs~~ 197 (465)
... ...++++.+..||+|++++|. ..++.++ ++.-..+++ ++++|.++
T Consensus 78 --------------------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~---ga~lvN~a 127 (178)
T PF02826_consen 78 --------------------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKP---GAVLVNVA 127 (178)
T ss_dssp --------------------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTT---TEEEEESS
T ss_pred --------------------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeecccc---ceEEEecc
Confidence 012 235788889999999999994 3343433 223334555 68899988
Q ss_pred cccc
Q 012349 198 KGVE 201 (465)
Q Consensus 198 kGi~ 201 (465)
-|=.
T Consensus 128 RG~~ 131 (178)
T PF02826_consen 128 RGEL 131 (178)
T ss_dssp SGGG
T ss_pred chhh
Confidence 8733
No 135
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.46 E-value=0.00042 Score=61.83 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=34.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
...++.|||+|.+|.+++..|+.. |. .+|++++|+.+++++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~----~~i~i~nRt~~ra~~ 51 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GA----KEITIVNRTPERAEA 51 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TS----SEEEEEESSHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CC----CEEEEEECCHHHHHH
Confidence 347999999999999999999998 72 469999999876553
No 136
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.44 E-value=0.0031 Score=62.40 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=62.2
Q ss_pred HHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccE-E--EE
Q 012349 155 QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI-L--YL 231 (465)
Q Consensus 155 ~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i-~--vl 231 (465)
.+++.++|+||+|||...+.++++++.+++++ +++|+-++ ++-.. +-+.+++.++.. .++ + =+
T Consensus 40 ~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~---~~iv~Dv~-SvK~~---------~~~~~~~~~~~~-~~~v~~HPM 105 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKP---GAIVTDVG-SVKAP---------IVEAMERLLPEG-VRFVGGHPM 105 (258)
T ss_dssp HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-T---TSEEEE---S-CHH---------HHHHHHHHHTSS-GEEEEEEES
T ss_pred HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCC---CcEEEEeC-CCCHH---------HHHHHHHhcCcc-cceeecCCC
Confidence 46789999999999999999999999998887 67666544 33211 224555555411 111 1 12
Q ss_pred eCC-----chhh-hhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEec
Q 012349 232 GGP-----NIAS-EIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN 274 (465)
Q Consensus 232 sGP-----~~a~-ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s 274 (465)
.|| ..+. +...|....++... +.+..+.+++++...|.++...
T Consensus 106 ~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 106 AGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp CSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred CCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 344 2232 34456654444333 3467889999999999887665
No 137
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.43 E-value=0.0016 Score=66.35 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=31.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||+|||+|.+|+++|..|+.+ +.+ .++.|+|.+++.++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~a~ 38 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL-GLF---SEIVLIDVNEGVAE 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence 799999999999999999987 642 47999999876543
No 138
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.41 E-value=0.0012 Score=66.80 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=31.8
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
|+|||+|.+|+++|..++.. |.. +++.++|++++.++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~-~~~---~el~l~D~~~~~~~g 38 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK-GLA---SELVLVDVNEEKAKG 38 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHHH
Confidence 68999999999999999987 632 579999998876543
No 139
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.40 E-value=0.0012 Score=67.19 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=29.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||+|+|+ |..|..++..|+.. |.. .+|.++++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-g~~---~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-DVV---KEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEECcc
Confidence 79999998 99999999999987 621 3699999964
No 140
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.40 E-value=0.00051 Score=61.79 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=33.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..++|+|+|+|.||.+++..|++. | .++|++|+|+++..+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g----~~~v~v~~r~~~~~~ 57 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-G----AAKIVIVNRTLEKAK 57 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C----CCEEEEEcCCHHHHH
Confidence 357999999999999999999876 4 168999999876544
No 141
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.38 E-value=0.0014 Score=63.36 Aligned_cols=120 Identities=23% Similarity=0.302 Sum_probs=78.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
-||+|+|+|-.|+++|..||.. | ++|.+||..+.++...- ..+ ++ +++++.+.. .+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~-G-----yqVqlYDI~e~Ql~~AL----en~-~K---el~~Lee~g-~lrG------- 61 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS-G-----YQVQLYDILEKQLQTAL----ENV-EK---ELRKLEEHG-LLRG------- 61 (313)
T ss_pred cceeEeecccccchHHHHHhcc-C-----ceEEEeeccHHHHHHHH----HHH-HH---HHHHHHHhh-hhcc-------
Confidence 4899999999999999999998 8 89999999987765421 111 11 111111111 1111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.+.++| .+.-|..|++++|++++|=.|-.|+|.+ ...++..++...+.+ .+++-|-+..+-
T Consensus 62 -nlsa~e-------------qla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~---~tIlaSSTSt~m 124 (313)
T KOG2305|consen 62 -NLSADE-------------QLALISGTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADP---TTILASSTSTFM 124 (313)
T ss_pred -CccHHH-------------HHHHHhCCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCC---ceEEeccccccC
Confidence 121111 1124667899999999998888999986 566777888887776 455545454443
Q ss_pred c
Q 012349 202 A 202 (465)
Q Consensus 202 ~ 202 (465)
+
T Consensus 125 p 125 (313)
T KOG2305|consen 125 P 125 (313)
T ss_pred h
Confidence 3
No 142
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.36 E-value=0.00064 Score=69.26 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=53.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+|+|||+|.+|..++..+....+ ..+|++|+|++++.+.+ .+.+.+. +
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~----~~~V~V~~Rs~~~a~~~-----a~~~~~~---------------g----- 174 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRP----IKQVRVWGRDPAKAEAL-----AAELRAQ---------------G----- 174 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHH-----HHHHHhc---------------C-----
Confidence 45789999999999999986665212 26899999998765531 1111100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
.++.+..++++++.+||+|+.|||+.
T Consensus 175 ------------------------~~~~~~~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 175 ------------------------FDAEVVTDLEAAVRQADIISCATLST 200 (314)
T ss_pred ------------------------CceEEeCCHHHHHhcCCEEEEeeCCC
Confidence 02445677888899999999999977
No 143
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.34 E-value=0.0026 Score=65.25 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=32.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~ 82 (465)
++.||+|||+ |.+|+++|..|+.. |.+. ...++.|+|.++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG-ELFGKDQPVVLHLLDIPP 44 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC-CcccCCCccEEEEEecCC
Confidence 5789999998 99999999999887 6432 111799999965
No 144
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.31 E-value=0.0016 Score=66.67 Aligned_cols=40 Identities=23% Similarity=0.438 Sum_probs=31.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCC-C-CeeEEEEecCch
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR-D-KVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~-~-~~~V~l~~r~~~ 83 (465)
++||+|||+ |.+|+++|..|+.. |.+. + ..++.|+|.+++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~~ 44 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG-EMFGPDQPVILQLLELPQA 44 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEEecCCc
Confidence 579999999 99999999999987 6542 1 127999998653
No 145
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.29 E-value=0.002 Score=63.85 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=62.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+|||+|+|+ |.||..++..+.+..+ .+ |-+++++++.... . ..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~-----~elvav~d~~~~~~~~-------------------------~-~~---- 45 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED-----LELVAAVDRPGSPLVG-------------------------Q-GA---- 45 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccc-------------------------c-CC----
Confidence 489999998 9999999988876412 44 4457776542211 0 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
..+..++|+++.+.++|+|+.++|+....+.+...... +..++.-+-|+
T Consensus 46 -------------------------~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~------G~~vvigttG~ 94 (257)
T PRK00048 46 -------------------------LGVAITDDLEAVLADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTGF 94 (257)
T ss_pred -------------------------CCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHHHc------CCCEEEECCCC
Confidence 02334678888777899999899888877776665442 33455456677
Q ss_pred ccc
Q 012349 201 EAE 203 (465)
Q Consensus 201 ~~~ 203 (465)
..+
T Consensus 95 s~~ 97 (257)
T PRK00048 95 TEE 97 (257)
T ss_pred CHH
Confidence 654
No 146
>PRK05442 malate dehydrogenase; Provisional
Probab=97.27 E-value=0.0031 Score=64.73 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=31.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~ 82 (465)
+++||+|||+ |.+|+.+|..|+.. |.+. ...++.|+|.++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~-~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG-DMLGKDQPVILQLLEIPP 45 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh-hhcCCCCccEEEEEecCC
Confidence 5689999998 99999999999876 6432 012799999865
No 147
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.23 E-value=0.0039 Score=62.07 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=46.9
Q ss_pred eEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 148 i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++|+++...++|+||.++|+....+.+...... +..+|+-+.|++.+. .+.+.+.... ..
T Consensus 56 v~~~~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~------g~~vVigttg~~~e~---------~~~l~~aA~~--~g 118 (266)
T TIGR00036 56 VPVTDDLEAVETDPDVLIDFTTPEGVLNHLKFALEH------GVRLVVGTTGFSEED---------KQELADLAEK--AG 118 (266)
T ss_pred ceeeCCHHHhcCCCCEEEECCChHHHHHHHHHHHHC------CCCEEEECCCCCHHH---------HHHHHHHHhc--CC
Confidence 556788877645689999999998888777765542 344666666876541 1233333221 12
Q ss_pred EEEEeCCchhh
Q 012349 228 ILYLGGPNIAS 238 (465)
Q Consensus 228 i~vlsGP~~a~ 238 (465)
+.++.+|||+-
T Consensus 119 ~~v~~a~NfSl 129 (266)
T TIGR00036 119 IAAVIAPNFSI 129 (266)
T ss_pred ccEEEECcccH
Confidence 45777888875
No 148
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.23 E-value=0.00094 Score=67.29 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
..++|+|+|+|.+|.++|..|... | .+|++++|+++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~-G-----~~V~v~~R~~~~ 186 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSAL-G-----ARVFVGARSSAD 186 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC-C-----CEEEEEeCCHHH
Confidence 347999999999999999999877 7 789999998753
No 149
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.22 E-value=0.0032 Score=64.08 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
|||+|||+|.+|+++|..|... +. +.++.|++++++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~-~~---~~el~LiDi~~~~ 37 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ-GL---GSELVLIDINEEK 37 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc-cc---cceEEEEEccccc
Confidence 6999999999999999999765 42 1489999999653
No 150
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.20 E-value=0.0037 Score=63.72 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=29.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
|||+|||+ |.+|+++|..|+.. |.. .++.|+|.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~-~~~---~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEEecC
Confidence 69999999 99999999999877 531 479999987
No 151
>PRK06436 glycerate dehydrogenase; Provisional
Probab=97.18 E-value=0.0013 Score=66.74 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=63.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|+||..+|..+..- | .+|..|+|+... .+.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~af-G-----~~V~~~~r~~~~------------------------------~~~---- 160 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAF-G-----MNIYAYTRSYVN------------------------------DGI---- 160 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcc------------------------------cCc----
Confidence 347999999999999999877654 6 899999886310 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
. ....+++++++.||+|++++|. ..++.++. +....+++ ++++|.++-|
T Consensus 161 -------------------------~-~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~---ga~lIN~sRG 211 (303)
T PRK06436 161 -------------------------S-SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK---GLAIINVARA 211 (303)
T ss_pred -------------------------c-cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCC---CeEEEECCCc
Confidence 0 0124678888999999999995 45665553 23344565 6888888877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 212 ~~ 213 (303)
T PRK06436 212 DV 213 (303)
T ss_pred cc
Confidence 43
No 152
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.16 E-value=0.0014 Score=71.56 Aligned_cols=94 Identities=22% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..+..- | .+|..|++.... +. ...
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~----- 180 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAF-G-----MKVIAYDPYISP-ER--------------------------AAQ----- 180 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh-----
Confidence 347999999999999999999866 6 899999885421 00 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
..+... ++++.++.+|+|++++|.. .++.++ .+....+++ ++++|.++-|
T Consensus 181 ------------------------~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~---ga~lIN~aRG 232 (526)
T PRK13581 181 ------------------------LGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKP---GVRIINCARG 232 (526)
T ss_pred ------------------------cCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCC---CeEEEECCCC
Confidence 012233 6888899999999999964 666666 345555666 6888888877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 233 ~~ 234 (526)
T PRK13581 233 GI 234 (526)
T ss_pred ce
Confidence 43
No 153
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.16 E-value=0.005 Score=62.66 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=95.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
.+|+|||-|+||..+|..|.++ | |.|...+|.+ -+.+ -++ |-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a-G-----h~li~hsRsd--yssa--------a~~-------------yg~~------- 96 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA-G-----HGLICHSRSD--YSSA--------AEK-------------YGSA------- 96 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc-C-----ceeEecCcch--hHHH--------HHH-------------hccc-------
Confidence 6899999999999999999999 8 9999999876 2211 111 1000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh-hhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~-l~~~~~~~ivIs~~kGi~~ 202 (465)
..+.-.|+- -+..|+|++||....++.++...-+. ++. +++++-.+.--.+
T Consensus 97 -----------------------~ft~lhdlc--erhpDvvLlctsilsiekilatypfqrlrr---gtlfvdvlSvKef 148 (480)
T KOG2380|consen 97 -----------------------KFTLLHDLC--ERHPDVVLLCTSILSIEKILATYPFQRLRR---GTLFVDVLSVKEF 148 (480)
T ss_pred -----------------------ccccHHHHH--hcCCCEEEEEehhhhHHHHHHhcCchhhcc---ceeEeeeeecchh
Confidence 011112332 26789999999999999999887665 454 5776644421111
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEE--EEeCCchhhhhhccCceEE---EEe---CChhHHHHHHHHHcCCCCe
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANA---RIC---GAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~--vlsGP~~a~ev~~g~~t~~---~~~---~~~~~~~~l~~ll~~~g~~ 270 (465)
+ -+.+.++++....-++ -+-||--...-.+|.|-.. .++ ..++.++.+-++|.+.+-+
T Consensus 149 e----------k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegck 214 (480)
T KOG2380|consen 149 E----------KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCK 214 (480)
T ss_pred H----------HHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCe
Confidence 1 1455667765432222 3467765555556654322 122 2367889999999887754
No 154
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=97.16 E-value=0.0013 Score=71.65 Aligned_cols=93 Identities=23% Similarity=0.270 Sum_probs=65.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|.+|..+|..+..- | .+|..|++.... +. ...
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 178 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAF-G-----MKVLAYDPYISP-ER--------------------------AEQ------ 178 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh------
Confidence 37899999999999999999766 6 789999875310 00 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+ .+...++++++++.||+|++++|.. .++.++ ++....+++ ++++|.++-|=
T Consensus 179 ---~--------------------g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 232 (525)
T TIGR01327 179 ---L--------------------GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKK---GVIIVNCARGG 232 (525)
T ss_pred ---c--------------------CCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCC---CeEEEEcCCCc
Confidence 0 1233457889999999999999954 666666 233335565 68888888773
No 155
>PLN00106 malate dehydrogenase
Probab=97.16 E-value=0.0077 Score=61.74 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=38.3
Q ss_pred HHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 31 ELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 31 ~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.-..+......||+|||+ |.+|+.+|..|+.+ +.. .++.|+|+++
T Consensus 6 ~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~---~el~L~Di~~ 54 (323)
T PLN00106 6 SLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMN-PLV---SELHLYDIAN 54 (323)
T ss_pred hhhccccccCCCCCEEEEECCCCHHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence 355555566667789999999 99999999999976 532 4899999976
No 156
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.16 E-value=0.0017 Score=66.40 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=62.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
...+++|||+|.+|.+.+..++...+ -.+|.+|+|++++.++ +.+.++.. .+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~----~~~v~v~~r~~~~a~~-----~~~~~~~~-------------~~------ 177 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRD----IERVRVYSRTFEKAYA-----FAQEIQSK-------------FN------ 177 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCC----ccEEEEECCCHHHHHH-----HHHHHHHh-------------cC------
Confidence 45789999999999988877754313 1589999999876543 21112110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEe
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~ 196 (465)
..+....|.++++.++|+|+.|||+.. .++. .++++ ++.|+++
T Consensus 178 ------------------------~~~~~~~~~~~~~~~aDiVi~aT~s~~--p~i~---~~l~~---G~hV~~i 220 (325)
T PRK08618 178 ------------------------TEIYVVNSADEAIEEADIIVTVTNAKT--PVFS---EKLKK---GVHINAV 220 (325)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEccCCCC--cchH---HhcCC---CcEEEec
Confidence 023456788889999999999999883 3333 34555 5655444
No 157
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=97.15 E-value=0.004 Score=58.71 Aligned_cols=85 Identities=20% Similarity=0.170 Sum_probs=49.9
Q ss_pred eEEEECccHHHHHH--HHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 45 RIVGVGAGAWGSVF--TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 45 kIaIIGaGamGsal--A~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||+|||+|+.-+.. -..+... ..+. ..++.|+|+++++++.+. ++.+.+.+. . +
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~-~~l~-~~ei~L~Did~~RL~~~~--~~~~~~~~~----------------~----~ 56 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT-EELS-GSEIVLMDIDEERLEIVE--RLARRMVEE----------------A----G 56 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT-TTST-EEEEEEE-SCHHHHHHHH--HHHHHHHHH----------------C----T
T ss_pred CEEEECCchHhhHHHHHHHHhcC-ccCC-CcEEEEEcCCHHHHHHHH--HHHHHHHHh----------------c----C
Confidence 79999999865553 2233332 2222 258999999998776421 122111110 0 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHH
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETK 174 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~ 174 (465)
. + ..+..|+|.++|+++||+||.++-.-..+
T Consensus 57 ~-~--------------------~~v~~ttd~~eAl~gADfVi~~irvGg~~ 87 (183)
T PF02056_consen 57 A-D--------------------LKVEATTDRREALEGADFVINQIRVGGLE 87 (183)
T ss_dssp T-S--------------------SEEEEESSHHHHHTTESEEEE---TTHHH
T ss_pred C-C--------------------eEEEEeCCHHHHhCCCCEEEEEeeecchH
Confidence 0 0 14778999999999999999998765444
No 158
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.14 E-value=0.0034 Score=54.80 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=59.9
Q ss_pred eEEEEC-ccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 45 kIaIIG-aGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||+|+| +|++|..+...|.++ - ..+ +.+++++.. ... . +.... + .+.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p----~~e~~~~~~~~~~-~g~----~----~~~~~---------~-~~~~~----- 51 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-P----DFELVALVSSSRS-AGK----P----LSEVF---------P-HPKGF----- 51 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-S----TEEEEEEEESTTT-TTS----B----HHHTT---------G-GGTTT-----
T ss_pred CEEEECCCCHHHHHHHHHHhcC-C----CccEEEeeeeccc-cCC----e----eehhc---------c-ccccc-----
Confidence 799999 899999999999986 2 144 455555541 110 1 11100 0 00100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
..+.+.+ +. +.+.++|+||+|+|+....++.+.+. +. +..||.++.-+
T Consensus 52 -----------------------~~~~~~~~~~-~~~~~~Dvvf~a~~~~~~~~~~~~~~---~~---g~~ViD~s~~~ 100 (121)
T PF01118_consen 52 -----------------------EDLSVEDADP-EELSDVDVVFLALPHGASKELAPKLL---KA---GIKVIDLSGDF 100 (121)
T ss_dssp -----------------------EEEBEEETSG-HHHTTESEEEE-SCHHHHHHHHHHHH---HT---TSEEEESSSTT
T ss_pred -----------------------cceeEeecch-hHhhcCCEEEecCchhHHHHHHHHHh---hC---CcEEEeCCHHH
Confidence 0223333 44 44689999999999999988888773 33 56788887554
No 159
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.13 E-value=0.0023 Score=65.61 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=54.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|.+|.+.+..+... - +..+|.+|+|++++.+. +.+.+++ + +
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~-~---~~~~v~V~~r~~~~~~~-----~~~~~~~-------------~--g----- 177 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV-F---DLEEVSVYCRTPSTREK-----FALRASD-------------Y--E----- 177 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHH-----HHHHHHh-------------h--C-----
Confidence 457899999999999977777543 1 12689999999876543 1111110 0 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
..+.+.++.+++++++|+|+.|||+.
T Consensus 178 ------------------------~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 178 ------------------------VPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred ------------------------CcEEEeCCHHHHhccCCEEEEecCCC
Confidence 03456788999999999999999985
No 160
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.13 E-value=0.0034 Score=59.92 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.||+|+|+|.+|+.+|..|++. |. .+++++|++
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~-Gv----g~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA-GI----GKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc-CC----CEEEEECCC
Confidence 6899999999999999999999 82 379999998
No 161
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.08 E-value=0.0015 Score=68.36 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=63.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|+|||.|++|..+|..+..- | .+|..|++..... .+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~-G-----~~V~~~Dp~~~~~-----------------------------~~------ 154 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL-G-----WKVLVCDPPRQEA-----------------------------EG------ 154 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCccccc-----------------------------cc------
Confidence 47899999999999999999866 7 8999998743200 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-----hHHHHH-HHHHHhhhccCCCCEEEEe
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----ETKEVF-EEISRYWKERITVPVIISL 196 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-----~l~~vl-~~l~~~l~~~~~~~ivIs~ 196 (465)
... ..++++.++.||+|++++|-. .+..++ ++....+++ ++++|.+
T Consensus 155 ------------------------~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~---gailIN~ 206 (381)
T PRK00257 155 ------------------------DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRP---GAWLINA 206 (381)
T ss_pred ------------------------Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCC---CeEEEEC
Confidence 011 235778889999999999953 244444 223344565 6889988
Q ss_pred eccccc
Q 012349 197 AKGVEA 202 (465)
Q Consensus 197 ~kGi~~ 202 (465)
+-|=..
T Consensus 207 aRG~vV 212 (381)
T PRK00257 207 SRGAVV 212 (381)
T ss_pred CCCccc
Confidence 887433
No 162
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.06 E-value=0.0019 Score=66.33 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=55.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+.++|+|||+|.+|.+.+..++...+ ..+|.+|+|++++++++ .+.+++ .+ +
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~----~~~V~v~~R~~~~a~~l-----~~~~~~-------------~~-g---- 182 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRP----IREVRVWARDAAKAEAY-----AADLRA-------------EL-G---- 182 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHH-----HHHHhh-------------cc-C----
Confidence 345799999999999998888875312 15899999998766542 111110 00 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
..+....|+++++.++|+|+.|||+.
T Consensus 183 -------------------------~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 183 -------------------------IPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred -------------------------ceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 02445688889999999999999985
No 163
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.0031 Score=65.35 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=94.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+.|+|||.|.||+-+|.-++++ | +.|.+|+|+.++.++ .++... ..+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~-G-----~~VavyNRt~~ktd~--------f~~~~~-----------~~k------- 50 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADH-G-----YTVAVYNRTTEKTDE--------FLAERA-----------KGK------- 50 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhc-C-----ceEEEEeCCHHHHHH--------HHHhCc-----------cCC-------
Confidence 35799999999999999999999 8 899999999987664 232211 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHH---HHhcCCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ---EAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~---eal~~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
++....+++ ..++..--|++-|++ ..+.+++++|.|++.+ +.++|---|
T Consensus 51 ------------------------~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~---gDIiIDGGN 103 (473)
T COG0362 51 ------------------------NIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEK---GDIIIDGGN 103 (473)
T ss_pred ------------------------CccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCC---CCEEEeCCC
Confidence 112223333 346777888888887 5678999999999987 678876665
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHc
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~ 265 (465)
..-.++ ..+..+ +.+ .|. . .+=.|-+=.+|.+..-|+ ++.+++.+..+.++.+|.
T Consensus 104 s~y~DT-----~RR~~e-L~~-~Gi---~-FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~ 158 (473)
T COG0362 104 SHYKDT-----IRRNKE-LSE-KGI---L-FVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILT 158 (473)
T ss_pred cCCchH-----HHHHHH-HHh-cCC---e-EEeccccccccccccCCC-cCCCCCHHHHHHHHHHHH
Confidence 544432 111111 111 121 1 122333334455544454 455666666666666665
No 164
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.06 E-value=0.0092 Score=62.60 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCe--eEEEE--ecCchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIW--RRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~--~V~l~--~r~~~~~~ 86 (465)
.+.||+|||+ |.+|+++|..|+.. |.+..+. .+.|+ +++++.++
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~-~l~~~~~ei~L~L~diD~~~~~a~ 91 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASG-EVFGQDQPIALKLLGSERSKEALE 91 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEeccCccchhhh
Confidence 4689999999 99999999999987 6543112 34445 66665443
No 165
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=97.04 E-value=0.0045 Score=65.80 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=68.8
Q ss_pred ceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+|+ +.--+...|++....+. ..+|.|+|.++++++.+ ..+.+.+. ... +
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~-~~ei~L~Did~~Rl~~v--~~l~~~~~----------------~~~----g 57 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELP-ISEVTLYDIDEERLDII--LTIAKRYV----------------EEV----G 57 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCC-CCEEEEEcCCHHHHHHH--HHHHHHHH----------------Hhh----C
Confidence 7999999998 33334444444310122 26899999998766542 11111111 100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-------------------------------
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------- 171 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~------------------------------- 171 (465)
. . ..+..|+|.++|+++||+||.++-.-
T Consensus 58 ~-~--------------------~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~a 116 (425)
T cd05197 58 A-D--------------------IKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSG 116 (425)
T ss_pred C-C--------------------eEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhh
Confidence 0 0 14788999999999999999987442
Q ss_pred -----hHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 172 -----ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 172 -----~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.+.++++++.++.+ ++++|..+|-++.
T Consensus 117 lrni~ii~~i~~~i~~~~P----~a~lin~TNP~di 148 (425)
T cd05197 117 LRQIPYVLDIARKXEKLSP----DAWYLNFTNPAGE 148 (425)
T ss_pred hhhHHHHHHHHHHHHHhCC----CcEEEecCChHHH
Confidence 24466666666653 6889999987654
No 166
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.03 E-value=0.0054 Score=61.68 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+|-++-.|-.-.-=+.-|+... .....++|+|||+|..|.+++..|+.. |. .+|++++|+.++++.
T Consensus 100 ~~g~l~G~NTD~~G~~~~l~~~~--~~~~~k~vlIlGaGGaaraia~aL~~~-G~----~~I~I~nR~~~ka~~ 166 (284)
T PRK12549 100 RDGRRIGHNTDWSGFAESFRRGL--PDASLERVVQLGAGGAGAAVAHALLTL-GV----ERLTIFDVDPARAAA 166 (284)
T ss_pred cCCEEEEEcCCHHHHHHHHHhhc--cCccCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 46767666765554444554322 122347899999999999999999987 72 479999999876553
No 167
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.02 E-value=0.0068 Score=61.83 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=29.4
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||+|||+ |++|+++|..|+.+ +.. .++.|+|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-~~~---~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-PYV---SELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEecCCC
Confidence 7999999 99999999999887 632 4799999976
No 168
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=97.01 E-value=0.0026 Score=65.22 Aligned_cols=98 Identities=21% Similarity=0.207 Sum_probs=68.7
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc-hhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~-~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
+-.-++|+|||.|.+|+.+|..+..- | .+|..|++.. ..... .
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~af-g-----m~v~~~d~~~~~~~~~--------------------------~---- 182 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAF-G-----MKVIGYDPYSPRERAG--------------------------V---- 182 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCCchhhhc--------------------------c----
Confidence 33457999999999999999999765 6 8999999832 11000 0
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHHH-HHHhhhccCCCCEEEEe
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE-ISRYWKERITVPVIISL 196 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~~-l~~~l~~~~~~~ivIs~ 196 (465)
.......++++.+..||+|++.+|- ..++.++.. .-..+++ ++++|.+
T Consensus 183 ---------------------------~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~---gailIN~ 232 (324)
T COG0111 183 ---------------------------DGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKP---GAILINA 232 (324)
T ss_pred ---------------------------ccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCC---CeEEEEC
Confidence 0123346788999999999999994 567766632 2234565 6789999
Q ss_pred ecccccc
Q 012349 197 AKGVEAE 203 (465)
Q Consensus 197 ~kGi~~~ 203 (465)
+-|-..+
T Consensus 233 aRG~vVd 239 (324)
T COG0111 233 ARGGVVD 239 (324)
T ss_pred CCcceec
Confidence 8884433
No 169
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.00 E-value=0.0019 Score=67.42 Aligned_cols=91 Identities=25% Similarity=0.261 Sum_probs=63.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..++|+|||.|++|+.+|..+..- | .+|..|++... +. ..
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~-G-----~~V~~~dp~~~--~~----------------------------~~---- 154 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEAL-G-----IKTLLCDPPRA--DR----------------------------GD---- 154 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCccc--cc----------------------------cc----
Confidence 457999999999999999999866 7 89999986421 00 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-----HHHHH-HHHHHhhhccCCCCEEEE
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIIS 195 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-----l~~vl-~~l~~~l~~~~~~~ivIs 195 (465)
.. ...++++.+..||+|++.+|-.. +..++ ++.-..+++ ++++|.
T Consensus 155 -------------------------~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~---gailIN 205 (378)
T PRK15438 155 -------------------------EG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKP---GAILIN 205 (378)
T ss_pred -------------------------cc-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCC---CcEEEE
Confidence 00 12467888899999999998432 44444 233344565 789999
Q ss_pred eecccc
Q 012349 196 LAKGVE 201 (465)
Q Consensus 196 ~~kGi~ 201 (465)
++-|=.
T Consensus 206 ~aRG~v 211 (378)
T PRK15438 206 ACRGAV 211 (378)
T ss_pred CCCchh
Confidence 988843
No 170
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.00 E-value=0.0031 Score=66.73 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=66.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|++|..+|..+..- | .+|..|++.+.. . ..
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-G-----m~V~~~d~~~~~-~---------------------------~~------ 189 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-G-----MRVYFYDIEDKL-P---------------------------LG------ 189 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCccc-c---------------------------cC------
Confidence 447999999999999999998755 6 789999875320 0 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
......++++.++.||+|++.+|. ..++.++. +.-..+++ ++++|.++-|
T Consensus 190 -------------------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG 241 (409)
T PRK11790 190 -------------------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKP---GAILINASRG 241 (409)
T ss_pred -------------------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCC---CeEEEECCCC
Confidence 122335788999999999999995 45666662 33344565 6889988877
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
=..
T Consensus 242 ~~v 244 (409)
T PRK11790 242 TVV 244 (409)
T ss_pred ccc
Confidence 433
No 171
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.99 E-value=0.0034 Score=59.78 Aligned_cols=50 Identities=24% Similarity=0.218 Sum_probs=37.3
Q ss_pred HhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 28 RLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 28 ~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|.|.-.+++|...+. ..||+|+|+|.+|+.++..|+.. |. ..++++|.+.
T Consensus 3 ~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~-GV----g~i~lvD~d~ 55 (197)
T cd01492 3 LYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLS-GI----GSLTILDDRT 55 (197)
T ss_pred hhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence 444444445443333 26899999999999999999999 83 5799999875
No 172
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.98 E-value=0.012 Score=61.29 Aligned_cols=237 Identities=16% Similarity=0.214 Sum_probs=135.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|.+|.|+|+|..+--+|..+.+. + .+.|-+.+|...+.+ .+.+.+++.. ..+...+.....
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~-~----~~~vGi~~R~S~rSq-----~f~~aL~~~~---------~~~~v~vqn~~h 61 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH-G----NCRVGIVGRESVRSQ-----RFFEALARSD---------GLFEVSVQNEQH 61 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc-c----CceeeeecCcchhHH-----HHHHHHHhCC---------CEEEEeecchhh
Confidence 45899999999999999999876 4 257999999765433 3444444321 011111100000
Q ss_pred CCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh-hhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~-l~~~~~~~ivIs~~kGi 200 (465)
. .+ +|-+ .+ .+..|.++...+.|.+|+|||+++..+|+++|..- ++. -..+|-++..+
T Consensus 62 ~-~l-------~G~~---------~id~~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~---vk~iVLvSPtf 121 (429)
T PF10100_consen 62 Q-AL-------SGEC---------TIDHVFQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKR---VKSIVLVSPTF 121 (429)
T ss_pred h-hh-------cCeE---------EhhHhhcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhh---CCEEEEECccc
Confidence 0 00 0000 01 13467778788899999999999999999999764 332 23455566666
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEe---C---------Cchhhhhh-ccCceEEEEe---CChhHHHHHHHHH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLG---G---------PNIASEIY-NKEYANARIC---GAEKWRKPLAKFL 264 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vls---G---------P~~a~ev~-~g~~t~~~~~---~~~~~~~~l~~ll 264 (465)
+.. ..+...+.+ .+.. ..+...| | |+.+---+ +++ +.++ +++.....++.+|
T Consensus 122 GS~-------~lv~~~l~~-~~~~-~EVISFStY~gdTr~~d~~~~~~vlt~~vK~k---iYigSt~~~s~~~~~l~~~~ 189 (429)
T PF10100_consen 122 GSH-------LLVKGFLND-LGPD-AEVISFSTYYGDTRWSDGEQPNRVLTTAVKKK---IYIGSTHSNSPELDKLCRLL 189 (429)
T ss_pred chH-------HHHHHHHHh-cCCC-ceEEEeecccccceeccCCCcceehhhhhhce---EEEEeCCCCChHHHHHHHHH
Confidence 543 233333333 2211 1121111 1 11111101 111 1222 2456789999999
Q ss_pred cCCCCeEEecCChHHHHHHH--------HHHHHHHHHHHhhh-cc-c-----C-CCcchHH--HHHHHHHHHHHHHHHHh
Q 012349 265 RRPHFTVWDNGDLVTHEVMG--------GLKNVYAIGAGMVA-AL-T-----N-ESATSKS--VYFAHCTSEMVFITHLL 326 (465)
Q Consensus 265 ~~~g~~v~~s~Di~gve~~g--------alKNviAia~Gi~~-gl-~-----~-g~~n~~a--~li~~~~~E~~~l~~a~ 326 (465)
...|+.+...+...-+|-.+ .+.|-.++.+=+-. +. + + .++=+.. .-|...-.||..+..++
T Consensus 190 ~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l 269 (429)
T PF10100_consen 190 AQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKL 269 (429)
T ss_pred HHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999998888743 35777766654421 11 1 1 1232221 33556778999999999
Q ss_pred CCCc
Q 012349 327 AEEP 330 (465)
Q Consensus 327 G~~~ 330 (465)
|+++
T Consensus 270 ~~~~ 273 (429)
T PF10100_consen 270 GIEP 273 (429)
T ss_pred CCCc
Confidence 9743
No 173
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.97 E-value=0.0062 Score=62.43 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=30.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~ 82 (465)
.||+|+|| |.+|+.+|..|+.. |.+. ...++.|+|+++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~-~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG-ELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CccCCCCceEEEEEecCC
Confidence 38999999 99999999999976 6442 113699999987
No 174
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0031 Score=61.30 Aligned_cols=88 Identities=25% Similarity=0.335 Sum_probs=60.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|+|+|+|+|.+|..+|..|++. | |+|.+++++++.+++...+. +. . ..+. ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g-----~~Vv~Id~d~~~~~~~~~~~----~~--------------~-~~v~---gd 52 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-G-----HNVVLIDRDEERVEEFLADE----LD--------------T-HVVI---GD 52 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-C-----CceEEEEcCHHHHHHHhhhh----cc--------------e-EEEE---ec
Confidence 7999999999999999999999 7 99999999998665311000 00 0 0000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCcchHHHHHHHHHHh
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRY 183 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~ea-l~~aDiVIlaVps~~l~~vl~~l~~~ 183 (465)
-.-.+-+++| +.++|+++.++..+....++-.+...
T Consensus 53 ------------------------~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~ 89 (225)
T COG0569 53 ------------------------ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALK 89 (225)
T ss_pred ------------------------CCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHH
Confidence 0001123444 78899999999999999988887643
No 175
>PLN00203 glutamyl-tRNA reductase
Probab=96.95 E-value=0.0022 Score=69.78 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=40.6
Q ss_pred hHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 29 ~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++..++.++...-...+|+|||+|.||.+++..|... |. .+|++++|+.+.++
T Consensus 252 v~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~-G~----~~V~V~nRs~era~ 304 (519)
T PLN00203 252 VELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSK-GC----TKMVVVNRSEERVA 304 (519)
T ss_pred HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhC-CC----CeEEEEeCCHHHHH
Confidence 4455667764223457999999999999999999987 61 47999999986554
No 176
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0023 Score=66.84 Aligned_cols=88 Identities=23% Similarity=0.274 Sum_probs=60.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||.|||+|.+|++.|..|+++ |. .+|++.+|+.++++++.. ... ..+.-.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~-~d----~~V~iAdRs~~~~~~i~~--------~~~----------~~v~~~----- 52 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN-GD----GEVTIADRSKEKCARIAE--------LIG----------GKVEAL----- 52 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC-CC----ceEEEEeCCHHHHHHHHh--------hcc----------ccceeE-----
Confidence 58999999999999999999998 62 699999999887765321 100 001100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHH
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI 180 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l 180 (465)
..+ +.-...+.+++++.|+||-|.|+.....+++..
T Consensus 53 --------------~vD--------~~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 53 --------------QVD--------AADVDALVALIKDFDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred --------------Eec--------ccChHHHHHHHhcCCEEEEeCCchhhHHHHHHH
Confidence 000 111234567789999999999998777776543
No 177
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.93 E-value=0.0038 Score=58.65 Aligned_cols=98 Identities=19% Similarity=0.336 Sum_probs=67.2
Q ss_pred hhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHH-HHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchh
Q 012349 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAML-QDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSRE 101 (465)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~L-a~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~ 101 (465)
..+.-+|+|+.++|-. .+-++.|||+|++|.|++..- .++.| . -|-++|.+++.+-.
T Consensus 67 nV~~L~~ff~~~Lg~~--~~tnviiVG~GnlG~All~Y~f~~~~~-----~~iv~~FDv~~~~VG~-------------- 125 (211)
T COG2344 67 NVKYLRDFFDDLLGQD--KTTNVIIVGVGNLGRALLNYNFSKKNG-----MKIVAAFDVDPDKVGT-------------- 125 (211)
T ss_pred cHHHHHHHHHHHhCCC--cceeEEEEccChHHHHHhcCcchhhcC-----ceEEEEecCCHHHhCc--------------
Confidence 3567789999999765 568999999999999998763 32323 3 35577877753321
Q ss_pred hhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHH
Q 012349 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEE 179 (465)
Q Consensus 102 ~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~ 179 (465)
...++ ++.-.++++..++ +.|+.|+|||+..-.++++.
T Consensus 126 -----------~~~~v-----------------------------~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~ 165 (211)
T COG2344 126 -----------KIGDV-----------------------------PVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVADR 165 (211)
T ss_pred -----------ccCCe-----------------------------eeechHHHHHHHHhcCccEEEEEccHHHHHHHHHH
Confidence 11111 1222355655555 78999999999999999888
Q ss_pred HHH
Q 012349 180 ISR 182 (465)
Q Consensus 180 l~~ 182 (465)
|..
T Consensus 166 Lv~ 168 (211)
T COG2344 166 LVK 168 (211)
T ss_pred HHH
Confidence 764
No 178
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.88 E-value=0.0057 Score=60.87 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=30.5
Q ss_pred eEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 148 i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+.+++|+++.-.+.|+|+.|+|+....+...+... . +..+++...|
T Consensus 49 ~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~~aL~---a---Gk~Vvi~s~~ 94 (265)
T PRK13303 49 VRVVSSVDALPQRPDLVVECAGHAALKEHVVPILK---A---GIDCAVISVG 94 (265)
T ss_pred CeeeCCHHHhccCCCEEEECCCHHHHHHHHHHHHH---c---CCCEEEeChH
Confidence 34567776653568999999999877766666543 3 3445655555
No 179
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.87 E-value=0.0046 Score=63.00 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=63.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|++|..+|..+.-- | .+|..|+|.....+ .
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~f-g-----m~V~~~d~~~~~~~----------------------------~------ 183 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAF-G-----AKVVYYSTSGKNKN----------------------------E------ 183 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhc-C-----CEEEEECCCccccc----------------------------c------
Confidence 447999999999999999988643 5 78988887531000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+. ..++++.++.||+|++++|- ..++.++. +.-..+++ ++++|.++-|
T Consensus 184 -------------------------~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~---~a~lIN~aRG 234 (311)
T PRK08410 184 -------------------------EYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKD---GAILINVGRG 234 (311)
T ss_pred -------------------------Cce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCC---CeEEEECCCc
Confidence 111 23678889999999999994 45655552 23344565 7899998888
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 235 ~v 236 (311)
T PRK08410 235 GI 236 (311)
T ss_pred cc
Confidence 43
No 180
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.86 E-value=0.0037 Score=66.24 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=33.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
|+|.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g-----~~v~vid~~~~~~~~ 38 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-N-----NDVTVIDTDEERLRR 38 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHH
Confidence 6899999999999999999988 7 899999998876543
No 181
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.85 E-value=0.0095 Score=59.26 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=44.9
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-++-.|-.-.--+.-|++. +. ....+++.|+|+|.+|.+++..|++. | .+|++++|++++++
T Consensus 90 ~~g~l~g~NTD~~G~~~~l~~~-~~-~~~~k~vliiGaGg~g~aia~~L~~~-g-----~~v~v~~R~~~~~~ 154 (270)
T TIGR00507 90 EDGKLVGYNTDGIGLVSDLERL-IP-LRPNQRVLIIGAGGAARAVALPLLKA-D-----CNVIIANRTVSKAE 154 (270)
T ss_pred eCCEEEEEcCCHHHHHHHHHhc-CC-CccCCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 3555555555444444445442 11 12346899999999999999999988 7 78999999876544
No 182
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.85 E-value=0.0055 Score=63.39 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=62.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|..|..-...++.-.. -.+|++|+|++++.++ +.+.++. .+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~----i~~V~v~~r~~~~a~~-----~~~~~~~---------------~~----- 178 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLG----IEEIRLYDIDPAATAK-----LARNLAG---------------PG----- 178 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCC----ceEEEEEeCCHHHHHH-----HHHHHHh---------------cC-----
Confidence 45789999999999888776665311 2689999999876553 1111110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEE
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivI 194 (465)
.++.+.++.++++.+||+|+.||++.....+++. .++++ ++.|.
T Consensus 179 ------------------------~~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~~--~~lkp---G~hV~ 222 (346)
T PRK07589 179 ------------------------LRIVACRSVAEAVEGADIITTVTADKTNATILTD--DMVEP---GMHIN 222 (346)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEecCCCCCCceecH--HHcCC---CcEEE
Confidence 0355678899999999999999987653333332 35565 56543
No 183
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.84 E-value=0.013 Score=62.61 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=38.6
Q ss_pred CeEEecCHHHHhcCCCEEEEecCcc------------------------------------hHHHHHHHHHHhhhccCCC
Q 012349 147 PLKVVTNLQEAVWDADIVINGLPST------------------------------------ETKEVFEEISRYWKERITV 190 (465)
Q Consensus 147 ~i~~t~dl~eal~~aDiVIlaVps~------------------------------------~l~~vl~~l~~~l~~~~~~ 190 (465)
.+..|+|.++|+++||+||.++-.. .+.++++++.++.+ +
T Consensus 61 ~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~p----d 136 (437)
T cd05298 61 KFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSP----D 136 (437)
T ss_pred EEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCC----C
Confidence 4788999999999999999987442 24555666666543 5
Q ss_pred CEEEEeeccccc
Q 012349 191 PVIISLAKGVEA 202 (465)
Q Consensus 191 ~ivIs~~kGi~~ 202 (465)
..+|..+|....
T Consensus 137 a~lin~tNP~~~ 148 (437)
T cd05298 137 AWILNYSNPAAI 148 (437)
T ss_pred eEEEEecCcHHH
Confidence 788888887654
No 184
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.82 E-value=0.011 Score=60.54 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=31.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~ 82 (465)
+.||+|+|+ |.+|++++..|+.. +.+. .+.+|.++++++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~-~~~~~~~~~el~L~D~~~ 43 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG-DVFGPDQPVILHLLDIPP 43 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-cccCCCCCcEEEEEEcCC
Confidence 579999999 99999999999886 5432 124899999965
No 185
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.81 E-value=0.006 Score=61.72 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.+||+|||+|.+|.+++..|... | .+|++++|+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-G-----a~V~v~~r~~~~ 187 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-G-----ANVTVGARKSAH 187 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHH
Confidence 47999999999999999999877 7 799999998753
No 186
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.81 E-value=0.011 Score=62.64 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred CeEEecCHHHHhcCCCEEEEec
Q 012349 147 PLKVVTNLQEAVWDADIVINGL 168 (465)
Q Consensus 147 ~i~~t~dl~eal~~aDiVIlaV 168 (465)
.+..|+|.++|+.+||+||.++
T Consensus 62 ~v~~t~d~~~al~gadfVi~~~ 83 (419)
T cd05296 62 KVHLTTDRREALEGADFVFTQI 83 (419)
T ss_pred EEEEeCCHHHHhCCCCEEEEEE
Confidence 4778999999999999999987
No 187
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.80 E-value=0.014 Score=59.95 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=30.7
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCch
Q 012349 45 RIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (465)
||+|||+ |.+|+++|..|+.. +.+. ...++.|+|+++.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-RMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-cccCCCCccEEEEEecCCc
Confidence 6999999 99999999999987 6542 2237999999654
No 188
>PLN02928 oxidoreductase family protein
Probab=96.80 E-value=0.0044 Score=64.12 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=65.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..+..- | .+|..|+|....... .. ..++.-. .
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~af-G-----~~V~~~dr~~~~~~~-----------~~-----------~~~~~~~--~ 207 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPF-G-----VKLLATRRSWTSEPE-----------DG-----------LLIPNGD--V 207 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCChhhh-----------hh-----------hcccccc--c
Confidence 347999999999999999999865 6 799999886321000 00 0000000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
. .+ . .......++++++..||+|++++|. ..++.++. +.-..+++ ++++|.+.-|
T Consensus 208 ~--~~-----~-------------~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~---ga~lINvaRG 264 (347)
T PLN02928 208 D--DL-----V-------------DEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKK---GALLVNIARG 264 (347)
T ss_pred c--cc-----c-------------cccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCC---CeEEEECCCc
Confidence 0 00 0 0000235788999999999999994 34555552 23334565 6889988877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 265 ~l 266 (347)
T PLN02928 265 GL 266 (347)
T ss_pred cc
Confidence 33
No 189
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.79 E-value=0.0042 Score=65.81 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=39.4
Q ss_pred hHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 29 ~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++..++.++... .+||.|||+|.||.+++..|+.. |. .++++++|+.++++
T Consensus 169 v~la~~~~~~l~--~kkvlviGaG~~a~~va~~L~~~-g~----~~I~V~nRt~~ra~ 219 (414)
T PRK13940 169 ITLAKRQLDNIS--SKNVLIIGAGQTGELLFRHVTAL-AP----KQIMLANRTIEKAQ 219 (414)
T ss_pred HHHHHHHhcCcc--CCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHH
Confidence 345566665443 36899999999999999999987 62 57999999876544
No 190
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.78 E-value=0.006 Score=61.96 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=33.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+..+|+|||+|.+|...+..++...+ ..+|.+|+|++++.++
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~----~~~v~v~~r~~~~a~~ 165 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLP----VRRVWVRGRTAASAAA 165 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC----CCEEEEEcCCHHHHHH
Confidence 45799999999999999999975313 1579999999876543
No 191
>PRK05086 malate dehydrogenase; Provisional
Probab=96.77 E-value=0.01 Score=60.55 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=29.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||+|||+ |.+|++++..+....+. .+++.++++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~---~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA---GSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC---ccEEEEEecCCC
Confidence 79999999 99999999988652121 268999998753
No 192
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.75 E-value=0.016 Score=53.97 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=29.7
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||+|||+|.+|+.++..|++. |. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GV----GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 689999999999999999998 83 4799999986
No 193
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.74 E-value=0.0057 Score=58.79 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=37.8
Q ss_pred hhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHh-cCCCCCCee-EEEEecCch
Q 012349 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVL-IRIWRRPGR 83 (465)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~-~G~~~~~~~-V~l~~r~~~ 83 (465)
.+.+-++++|+.+++. ...+|+|||+|.+|..++..+... .| .+ |-+++++++
T Consensus 67 ~v~~l~~~~~~~l~~~--~~~rV~IIGaG~iG~~l~~~~~~~~~g-----~~ivgv~D~d~~ 121 (213)
T PRK05472 67 NVEELLEFIEKILGLD--RTWNVALVGAGNLGRALLNYNGFEKRG-----FKIVAAFDVDPE 121 (213)
T ss_pred eHHHHHHHHHHHhCCC--CCcEEEEECCCHHHHHHHHhhhcccCC-----cEEEEEEECChh
Confidence 4566678888888776 457899999999999999864321 13 44 446777653
No 194
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.73 E-value=0.023 Score=60.64 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=33.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC----eeEEEEecCchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK----VLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~----~~V~l~~r~~~~~~ 86 (465)
++.||+|||+ |.+|+++|..|+.. +.|.++ .++.+++++++.++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~ 147 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALE 147 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhH
Confidence 4589999999 99999999999876 433311 26888899887654
No 195
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0057 Score=62.81 Aligned_cols=95 Identities=26% Similarity=0.315 Sum_probs=64.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+...++|||+|..+-.-...+..-.+ -.+|.+|+|+++..++ +...+.+. +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~----~~~I~i~~r~~~~~e~-----~a~~l~~~--------------------~ 179 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRD----IREIRVYSRDPEAAEA-----FAARLRKR--------------------G 179 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCC----ccEEEEEcCCHHHHHH-----HHHHHHhh--------------------c
Confidence 44689999999999998888875422 2689999999986653 11111110 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEE
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs 195 (465)
+ ..+.+..+.++++++||+|+-|||+.. .++. ..++++ ++.|.+
T Consensus 180 ~-----------------------~~v~a~~s~~~av~~aDiIvt~T~s~~--Pil~--~~~l~~---G~hI~a 223 (330)
T COG2423 180 G-----------------------EAVGAADSAEEAVEGADIVVTATPSTE--PVLK--AEWLKP---GTHINA 223 (330)
T ss_pred C-----------------------ccceeccCHHHHhhcCCEEEEecCCCC--Ceec--HhhcCC---CcEEEe
Confidence 1 135677899999999999999999987 3332 234555 555433
No 196
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.70 E-value=0.015 Score=56.25 Aligned_cols=82 Identities=20% Similarity=0.396 Sum_probs=58.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|+|++||+|++|..+...+-+. -. +-.-|.+|+|+.+++.++ .. .+.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~--~~-~~e~v~v~D~~~ek~~~~---------~~-------------~~~-------- 47 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG--RV-DFELVAVYDRDEEKAKEL---------EA-------------SVG-------- 47 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC--Cc-ceeEEEEecCCHHHHHHH---------Hh-------------hcC--------
Confidence 6899999999999998887532 11 113588999998755421 00 011
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
....+++++.+.+.|+++.|-.++.+++...++..
T Consensus 48 ------------------------~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~ 82 (255)
T COG1712 48 ------------------------RRCVSDIDELIAEVDLVVEAASPEAVREYVPKILK 82 (255)
T ss_pred ------------------------CCccccHHHHhhccceeeeeCCHHHHHHHhHHHHh
Confidence 11236777777999999999999999998877654
No 197
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.69 E-value=0.01 Score=61.36 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=31.2
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+..++|+||+|+|.....++...+.. . +..||.++..+-.
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~a~~---a---G~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQLLE---A---GVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCcccCC
Confidence 45679999999999988888777653 2 5689999877654
No 198
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.69 E-value=0.0064 Score=62.31 Aligned_cols=79 Identities=24% Similarity=0.270 Sum_probs=55.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|.+|.+.+..|+...+. .+|++|+|+.++.++ +.+.+.+. +.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i----~~v~V~~R~~~~a~~-----~a~~~~~~-------------~g------ 179 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDI----RSARIWARDSAKAEA-----LALQLSSL-------------LG------ 179 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCc----cEEEEECCCHHHHHH-----HHHHHHhh-------------cC------
Confidence 457899999999999999998743131 579999999876553 21111100 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~ 172 (465)
..+...+++++++.++|+|+.|||+..
T Consensus 180 ------------------------~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 180 ------------------------IDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred ------------------------ceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 024456788889999999999999853
No 199
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.68 E-value=0.011 Score=56.29 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=34.6
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+-..|+|+|+|.|+||..+|..|.+. | ++|++++++++.++
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~-G-----~~Vvv~D~~~~~~~ 65 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEE-G-----AKLIVADINEEAVA 65 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 33457999999999999999999998 7 89999998875443
No 200
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.68 E-value=0.014 Score=59.72 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
+|.||+|||+ |.+|+.+|..|+.. +.. .++.|+|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~-~~~---~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQN-PHV---SELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcC-CCC---CEEEEEecC
Confidence 4679999999 99999999999865 421 589999993
No 201
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.68 E-value=0.012 Score=62.40 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=48.4
Q ss_pred HHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
++.+++|++.++.....+++|.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~-~-----~~v~vid~~~~~~~~ 269 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKE-G-----YSVKLIERDPERAEE 269 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence 4678888988887776779999999999999999999987 6 899999999876553
No 202
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.67 E-value=0.034 Score=49.26 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=30.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|+|+|++|+.++..|++. |. .+++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv----~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GV----GKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TT----SEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CC----CceeecCCcc
Confidence 6899999999999999999999 83 5899999875
No 203
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.66 E-value=0.0068 Score=64.33 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=32.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
..++|+|||+|.||..++..|... |. .+|++++|+.+.+
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~-G~----~~V~v~~r~~~ra 219 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEK-GV----RKITVANRTLERA 219 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHC-CC----CeEEEEeCCHHHH
Confidence 347999999999999999999877 61 3799999987644
No 204
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.65 E-value=0.021 Score=54.45 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.|+|+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~-Gv----~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA-GV----GTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEecCCE
Confidence 6899999999999999999998 83 5899999884
No 205
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.61 E-value=0.0095 Score=60.77 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=49.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|..|..-+..++.-.+ -.+|.+|+|+++..++ +.+.++. + +
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~----i~~v~v~~r~~~~~~~-----~~~~~~~--------------~-~----- 177 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRP----IKEVRVYSRSPERAEA-----FAARLRD--------------L-G----- 177 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS------SEEEEE-SSHHHHHH-----HHHHHHC--------------C-C-----
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCC----ceEEEEEccChhHHHH-----HHHhhcc--------------c-c-----
Confidence 44689999999999998888876422 1589999999876553 2211111 0 1
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~ 172 (465)
..+....|.++++.+||+|+.|||+..
T Consensus 178 ------------------------~~v~~~~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 178 ------------------------VPVVAVDSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp ------------------------TCEEEESSHHHHHTTSSEEEE----SS
T ss_pred ------------------------ccceeccchhhhcccCCEEEEccCCCC
Confidence 146678899999999999999999876
No 206
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.61 E-value=0.017 Score=57.85 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=47.8
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-++-.|-.-.--+..|+...+. ....+++.|+|+|.+|.+++..|+.. |. .+|++++|+.++++
T Consensus 95 ~~g~l~G~NTD~~G~~~~l~~~~~~-~~~~k~vlVlGaGg~a~ai~~aL~~~-g~----~~V~v~~R~~~~a~ 161 (278)
T PRK00258 95 EDGRLIGDNTDGIGFVRALEERLGV-DLKGKRILILGAGGAARAVILPLLDL-GV----AEITIVNRTVERAE 161 (278)
T ss_pred eCCEEEEEcccHHHHHHHHHhccCC-CCCCCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHH
Confidence 4666666676655555555542221 22346899999999999999999987 62 58999999976554
No 207
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.59 E-value=0.0062 Score=61.69 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=29.3
Q ss_pred CceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaG-amGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
-++|+|||.| .||..+|..|.++ | +.|++|.+.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~-g-----atVtv~~~~ 192 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQA-H-----CSVTVVHSR 192 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-C-----CEEEEECCC
Confidence 4799999996 9999999999998 7 899999654
No 208
>PLN02306 hydroxypyruvate reductase
Probab=96.55 E-value=0.012 Score=61.87 Aligned_cols=110 Identities=16% Similarity=0.261 Sum_probs=66.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..++...| .+|..|++....... . .....+ ..+...
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fG-----m~V~~~d~~~~~~~~----~---~~~~~~----------~~l~~~---- 217 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFK-----MNLIYYDLYQSTRLE----K---FVTAYG----------QFLKAN---- 217 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCCchhhh----h---hhhhhc----------cccccc----
Confidence 34799999999999999999864435 789999886531000 0 000000 000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
+. ....+....++++++..||+|++++| ...++.++. +.-..+++ ++++|.++-|
T Consensus 218 ~~--------------------~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~---ga~lIN~aRG 274 (386)
T PLN02306 218 GE--------------------QPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKK---EAVLVNASRG 274 (386)
T ss_pred cc--------------------ccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCC---CeEEEECCCc
Confidence 00 00012223589999999999999999 446666653 23344565 6889988877
Q ss_pred c
Q 012349 200 V 200 (465)
Q Consensus 200 i 200 (465)
=
T Consensus 275 ~ 275 (386)
T PLN02306 275 P 275 (386)
T ss_pred c
Confidence 3
No 209
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.54 E-value=0.0084 Score=60.84 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=57.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|..|.+-+..++.-.. -.+|.+|+|++++.++ +.+.+.+. + +
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~----i~~v~v~~r~~~~a~~-----f~~~~~~~-------------~-~----- 167 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYN----PKRIRVYSRNFDHARA-----FAERFSKE-------------F-G----- 167 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCC----CCEEEEECCCHHHHHH-----HHHHHHHh-------------c-C-----
Confidence 55899999999999998888875311 2689999999876553 22112110 0 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~ 172 (465)
..+.+.+++++++.+||+|+-+|++..
T Consensus 168 ------------------------~~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 168 ------------------------VDIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 035667889999999999999999864
No 210
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.53 E-value=0.0097 Score=60.80 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=62.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..+..- | .+|..|+|.... ..
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~f-g-----m~V~~~~~~~~~---------------------------~~-------- 185 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAF-G-----MRVLIGQLPGRP---------------------------AR-------- 185 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCCc---------------------------cc--------
Confidence 347999999999999999998644 5 788888764210 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
.. ..++++.++.||+|++++|- ..++.++. +.-..+++ ++++|.+.-|
T Consensus 186 --------------------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~---ga~lIN~aRG 235 (317)
T PRK06487 186 --------------------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP---GALLINTARG 235 (317)
T ss_pred --------------------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC---CeEEEECCCc
Confidence 00 12577889999999999994 46666653 23344565 6889988877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 236 ~v 237 (317)
T PRK06487 236 GL 237 (317)
T ss_pred cc
Confidence 33
No 211
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.51 E-value=0.014 Score=59.58 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+..+++|||+|..|..-+..++.- - +-.+|++|+|++++.++ +.+.+++ . +
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v-~---~i~~v~v~~r~~~~a~~-----~~~~~~~--------------~-~---- 177 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNV-T---DCRQLWVWGRSETALEE-----YRQYAQA--------------L-G---- 177 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHH-----HHHHHHh--------------c-C----
Confidence 3568999999999999888887754 1 12689999999886653 2111110 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEe
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~ 196 (465)
.++.+.++.++++.+||+|+.||++.. .+++ ..++++ ++.|.++
T Consensus 178 -------------------------~~v~~~~~~~~av~~ADIV~taT~s~~--P~~~--~~~l~~---G~hi~~i 221 (315)
T PRK06823 178 -------------------------FAVNTTLDAAEVAHAANLIVTTTPSRE--PLLQ--AEDIQP---GTHITAV 221 (315)
T ss_pred -------------------------CcEEEECCHHHHhcCCCEEEEecCCCC--ceeC--HHHcCC---CcEEEec
Confidence 035567889999999999999999764 3332 134555 5655443
No 212
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.50 E-value=0.013 Score=60.16 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=64.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|++|..+|..+....| .+|..|++.... +. ...
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fg-----m~V~~~~~~~~~-~~--------------------------~~~----- 186 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFN-----MPILYNARRHHK-EA--------------------------EER----- 186 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCC-----CEEEEECCCCch-hh--------------------------HHh-----
Confidence 34799999999999999999862325 678888775321 00 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
..... .++++.++.||+|++++|- ..++.++. +.-..+++ ++++|.++-|
T Consensus 187 ------------------------~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~---ga~lIN~aRG 238 (323)
T PRK15409 187 ------------------------FNARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKS---SAIFINAGRG 238 (323)
T ss_pred ------------------------cCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECCCc
Confidence 01222 3788889999999999994 45666652 23344565 6889988887
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 239 ~v 240 (323)
T PRK15409 239 PV 240 (323)
T ss_pred cc
Confidence 33
No 213
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.46 E-value=0.0086 Score=63.47 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=36.2
Q ss_pred HhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 32 ~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
..+.++.. ...+|+|||+|.||..++..|... |. .+|++|+|+.+.+
T Consensus 171 a~~~~~~l--~~~~VlViGaG~iG~~~a~~L~~~-G~----~~V~v~~rs~~ra 217 (417)
T TIGR01035 171 AERIFGSL--KGKKALLIGAGEMGELVAKHLLRK-GV----GKILIANRTYERA 217 (417)
T ss_pred HHHHhCCc--cCCEEEEECChHHHHHHHHHHHHC-CC----CEEEEEeCCHHHH
Confidence 33445433 337899999999999999999887 62 5899999987643
No 214
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.43 E-value=0.0096 Score=62.72 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=42.4
Q ss_pred hHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 29 ~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+..++.++.. ...|+.|||+|-||...|..|+.+ |. ..|++.+|+.+++..
T Consensus 166 v~lA~~~~~~L--~~~~vlvIGAGem~~lva~~L~~~-g~----~~i~IaNRT~erA~~ 217 (414)
T COG0373 166 VELAKRIFGSL--KDKKVLVIGAGEMGELVAKHLAEK-GV----KKITIANRTLERAEE 217 (414)
T ss_pred HHHHHHHhccc--ccCeEEEEcccHHHHHHHHHHHhC-CC----CEEEEEcCCHHHHHH
Confidence 45667888754 347899999999999999999998 73 689999999876553
No 215
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.43 E-value=0.037 Score=49.41 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=29.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||.|+|+|.+|+.++..|++. |. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv----~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GV----GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC----CEEEEEcCCC
Confidence 689999999999999999998 82 4799998874
No 216
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=96.42 E-value=0.012 Score=60.26 Aligned_cols=92 Identities=21% Similarity=0.300 Sum_probs=63.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++++|||.|.+|.++|..+. ..| .+|..|+|.+. -+. .. ..
T Consensus 146 gktvGIiG~GrIG~avA~r~~-~Fg-----m~v~y~~~~~~-~~~----------~~-------------~~-------- 187 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLK-GFG-----MKVLYYDRSPN-PEA----------EK-------------EL-------- 187 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCC-----CEEEEECCCCC-hHH----------Hh-------------hc--------
Confidence 479999999999999999998 425 78999998763 110 00 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+..... +++.++.+|+|++.+|. ..++-++. +....+++ +.++|.+.-|=
T Consensus 188 ------------------------~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~---ga~lVNtaRG~ 239 (324)
T COG1052 188 ------------------------GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKP---GAILVNTARGG 239 (324)
T ss_pred ------------------------Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 122333 77889999999999995 46666653 23344565 67888888773
No 217
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.40 E-value=0.011 Score=57.49 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|+|+|.+|+.+|..|++. |. .+++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~-Gv----g~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA-GV----GKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence 5899999999999999999998 83 5899998875
No 218
>PRK06046 alanine dehydrogenase; Validated
Probab=96.39 E-value=0.012 Score=60.22 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=32.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+..+|+|||+|.+|...+..++...+ -..|.+|+|++++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~----i~~v~v~~r~~~~~~ 168 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFD----LEEVRVYDRTKSSAE 168 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC----ceEEEEECCCHHHHH
Confidence 45799999999999999988875412 157999999987554
No 219
>PLN02494 adenosylhomocysteinase
Probab=96.37 E-value=0.021 Score=61.20 Aligned_cols=66 Identities=23% Similarity=0.161 Sum_probs=47.1
Q ss_pred ccccccCCCe--eEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 8 VNDSLSSNGL--IHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 8 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||||...... .|-|.-|+ +|-+.|..+.. ..-++|+|+|.|.+|..+|..+... | .+|+++++++.
T Consensus 221 vnds~~K~~fDn~yGtgqS~---~d~i~r~t~i~-LaGKtVvViGyG~IGr~vA~~aka~-G-----a~VIV~e~dp~ 288 (477)
T PLN02494 221 VNDSVTKSKFDNLYGCRHSL---PDGLMRATDVM-IAGKVAVICGYGDVGKGCAAAMKAA-G-----ARVIVTEIDPI 288 (477)
T ss_pred EcChhhhhhhhccccccccH---HHHHHHhcCCc-cCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCch
Confidence 6777654322 23333444 77777776552 2346899999999999999999766 6 78999998874
No 220
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.36 E-value=0.027 Score=57.12 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=28.9
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 48 IIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|||+|.+|+++|..|+.. +.+ .++.|+|++++.++
T Consensus 1 iIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~ 35 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ-GIA---DEIVLIDINKDKAE 35 (299)
T ss_pred CCCcCHHHHHHHHHHHhc-CCC---CEEEEEeCCCChhh
Confidence 799999999999999887 642 47999999876544
No 221
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.35 E-value=0.039 Score=46.20 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=53.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|+|+|..|.+++..+-+..|+ .-+.+++.+++..-+ ...
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~----~i~~~~dv~~~~~G~-------------------------~i~------- 46 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGF----GIVAVFDVDPEKIGK-------------------------EIG------- 46 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCE----CEEEEEEECTTTTTS-------------------------EET-------
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCC----CCEEEEEcCCCccCc-------------------------EEC-------
Confidence 46899999999999998655554341 236677887753211 111
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHH
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~ 182 (465)
.+.+..+.+++.+. .|+-+++||+....+++.++..
T Consensus 47 ------------------------gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 47 ------------------------GIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp ------------------------TEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHHH
T ss_pred ------------------------CEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 23333445554443 9999999999999998888765
No 222
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.33 E-value=0.012 Score=59.95 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..+..- | .+|..|++... . ...
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~f-g-----~~V~~~~~~~~--~--------------------------~~~------ 185 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQAL-G-----MKVLYAEHKGA--S--------------------------VCR------ 185 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCcc--c--------------------------ccc------
Confidence 347999999999999999988643 5 68888865421 0 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
.. ..++++++..||+|++++| ...++.++. +.-..+++ ++++|.+.-|
T Consensus 186 --------------------------~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG 235 (314)
T PRK06932 186 --------------------------EG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKP---TAFLINTGRG 235 (314)
T ss_pred --------------------------cc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCC---CeEEEECCCc
Confidence 00 1357888999999999999 445666552 23334565 6889988887
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
=..
T Consensus 236 ~~V 238 (314)
T PRK06932 236 PLV 238 (314)
T ss_pred ccc
Confidence 433
No 223
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.30 E-value=0.017 Score=59.63 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|.+|+.+|..|++. |. ..++++|++.
T Consensus 25 ~~VlIiG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA-GI----GKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCc
Confidence 6899999999999999999999 82 3899999985
No 224
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.22 E-value=0.02 Score=58.58 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=27.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~ 82 (465)
++||+|+|+|+||...+..+.++.+ .+ |-+|++++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd-----~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPD-----MELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCC-----cEEEEEEcCCc
Confidence 4799999999999999988876522 44 44678875
No 225
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.21 E-value=0.013 Score=59.44 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=28.4
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~ 79 (465)
-++|+||| +|.||..+|..|.++ | +.|++|.
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~-g-----~tVtv~~ 189 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAA-N-----ATVTIAH 189 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhC-C-----CEEEEEC
Confidence 47999999 999999999999988 7 8999994
No 226
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.16 E-value=0.021 Score=53.14 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=32.8
Q ss_pred HHHhhhhcCCCCCCceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 30 DELRRLMGKAEGDPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 30 ~~~~~~~~~~~~~~mkIaIIGaGam-GsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
+.++..++.. ...+|.|||+|-| |..+|..|.+. | .+|++.+|+
T Consensus 33 ~l~~~~~~~l--~gk~vlViG~G~~~G~~~a~~L~~~-g-----~~V~v~~r~ 77 (168)
T cd01080 33 ELLKRYGIDL--AGKKVVVVGRSNIVGKPLAALLLNR-N-----ATVTVCHSK 77 (168)
T ss_pred HHHHHcCCCC--CCCEEEEECCcHHHHHHHHHHHhhC-C-----CEEEEEECC
Confidence 3444454333 4479999999987 88899999988 6 678888765
No 227
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.15 E-value=0.046 Score=54.89 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=46.0
Q ss_pred CCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+|-++-.|-.-.-=+.-|++.-.......+++.|||+|.+|.+++..|++. |. .+|++++|+.++.+.
T Consensus 97 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~-G~----~~i~I~nRt~~ka~~ 164 (282)
T TIGR01809 97 NGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASL-GV----TDITVINRNPDKLSR 164 (282)
T ss_pred CCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHc-CC----CeEEEEeCCHHHHHH
Confidence 565555565544444455542211112346899999999999999999987 72 579999999875543
No 228
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.12 E-value=0.032 Score=57.73 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=32.4
Q ss_pred CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+.++...++|+||+|+|.....++...+.. . +..||.++.-+-.
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~---~---G~~VIDlS~~fR~ 104 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAPELLA---A---GVKVIDLSADFRL 104 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHHHHHh---C---CCEEEeCChhhhc
Confidence 444544689999999999988888777653 2 5678888866543
No 229
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.10 E-value=0.027 Score=57.06 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 154 LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 154 l~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+++.++++|+||.++-+...+.++..+.... +.++|+..-|++
T Consensus 102 l~~li~~~DvV~d~tDn~esR~L~~~~~~~~-----~k~~I~aalGfd 144 (307)
T cd01486 102 LEELIKDHDVIFLLTDSRESRWLPTLLSAAK-----NKLVINAALGFD 144 (307)
T ss_pred HHHHHhhCCEEEECCCCHHHHHHHHHHHHHh-----CCcEEEEEeccc
Confidence 5577899999999999999998888887543 346777666664
No 230
>PRK08328 hypothetical protein; Provisional
Probab=96.08 E-value=0.034 Score=54.26 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=40.6
Q ss_pred HHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 27 ERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+|.+.=++++|...+. ..||+|+|+|..|+.++..|+.. |. .+++++|.+.-...
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~-Gv----g~i~lvD~D~ve~s 65 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAA-GV----GRILLIDEQTPELS 65 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCccChh
Confidence 4666555566543332 36899999999999999999998 83 57999988764333
No 231
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.08 E-value=0.068 Score=56.48 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=44.5
Q ss_pred ccccccCCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||||..... .+..-|.=+.-+|.+.+..+.. ...++|+|+|+|.+|..+|..+... | .+|+++++++.
T Consensus 162 vnds~~K~~-fDn~yg~g~s~~~~i~r~t~~~-l~Gk~VvViG~G~IG~~vA~~ak~~-G-----a~ViV~d~dp~ 229 (406)
T TIGR00936 162 VNDAYTKSL-FDNRYGTGQSTIDGILRATNLL-IAGKTVVVAGYGWCGKGIAMRARGM-G-----ARVIVTEVDPI 229 (406)
T ss_pred ecchhhchh-hhcccccchhHHHHHHHhcCCC-CCcCEEEEECCCHHHHHHHHHHhhC-c-----CEEEEEeCChh
Confidence 566655432 1211122244456555554321 2336999999999999999998866 6 78999998875
No 232
>PRK11579 putative oxidoreductase; Provisional
Probab=96.05 E-value=0.045 Score=56.23 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=31.4
Q ss_pred EecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 150 VVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 150 ~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+.+|+++.+. +.|+|++|+|+....+++.+... . +..|+ +-|-+..
T Consensus 52 ~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~---a---GkhVl-~EKPla~ 99 (346)
T PRK11579 52 VVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALE---A---GKHVV-VDKPFTV 99 (346)
T ss_pred eeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---C---CCeEE-EeCCCCC
Confidence 4578888775 57999999999877776666543 2 33443 6776654
No 233
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.04 E-value=0.072 Score=56.43 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=45.5
Q ss_pred ccccccCCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
||||...... +..-|.=+.-+|.+.+..+.. ..-.+|+|+|+|.+|..++..+... | .+|+++++++.+
T Consensus 169 vnds~~K~~~-dn~~g~g~s~~~~i~r~t~~~-l~GktVvViG~G~IG~~va~~ak~~-G-----a~ViV~d~d~~R 237 (413)
T cd00401 169 VNDSVTKSKF-DNLYGCRESLIDGIKRATDVM-IAGKVAVVAGYGDVGKGCAQSLRGQ-G-----ARVIVTEVDPIC 237 (413)
T ss_pred ecchhhcccc-cccchhchhhHHHHHHhcCCC-CCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECChhh
Confidence 5666544321 211122222357777766542 2236899999999999999988776 7 789999988754
No 234
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.02 E-value=0.067 Score=56.86 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=35.9
Q ss_pred hHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 29 ~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++-+++.-+.. ..-++|+|+|+|.+|..+|..+... | .+|+++++++.
T Consensus 199 ~~ai~rat~~~-l~Gk~VlViG~G~IG~~vA~~lr~~-G-----a~ViV~d~dp~ 246 (425)
T PRK05476 199 LDGIKRATNVL-IAGKVVVVAGYGDVGKGCAQRLRGL-G-----ARVIVTEVDPI 246 (425)
T ss_pred HHHHHHhccCC-CCCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCch
Confidence 45455443221 2336899999999999999999877 7 78999999875
No 235
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.00 E-value=0.036 Score=58.14 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=56.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|..|..-...++.- - .+-.+|.+|+|++++.++ +.+.+.+ .+++.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v-~--~~i~~V~v~~r~~~~a~~-----f~~~~~~-------------~~~~~---- 208 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAV-C--PGIDTIKIKGRGQKSLDS-----FATWVAE-------------TYPQI---- 208 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-c--CCccEEEEECCCHHHHHH-----HHHHHHH-------------hcCCC----
Confidence 557899999999999998888763 1 001589999999876553 2111211 01110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
.++.+.++.++++.+||+|+.||++.
T Consensus 209 ------------------------~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 209 ------------------------TNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred ------------------------ceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 02566789999999999999999763
No 236
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.95 E-value=0.053 Score=63.42 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=31.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCC---------CCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLR---------DKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~---------~~~~V~l~~r~~~~~~ 86 (465)
++||+|||+|.||...+..|++. .... +...|.+.+++.+.++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~ 620 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAK 620 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHH
Confidence 56899999999999999999976 3110 0013888888765443
No 237
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.94 E-value=0.056 Score=53.82 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=54.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+||+|||+|++|..++..+... +. . +.+ +.+++|+.+..++ +..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~-~~-~-~~~l~~V~~~~~~~~~~--------------------------~~~----- 47 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLAD-AA-Q-PCQLAALTRNAADLPPA--------------------------LAG----- 47 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcC-CC-C-ceEEEEEecCCHHHHHH--------------------------hhc-----
Confidence 37999999999999999998653 21 0 133 4455655432221 100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCcchHHHHHHHHHH
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~ea-l~~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
...+.+|+++. ..++|+|+.|-.++.+++..+.+..
T Consensus 48 -------------------------~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~iL~ 84 (267)
T PRK13301 48 -------------------------RVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGCLT 84 (267)
T ss_pred -------------------------cCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence 11234567774 5789999999999999998888754
No 238
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.92 E-value=0.058 Score=51.99 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|.+|+.+|..|++. |. .+++++|.+.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS-GV----GNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6899999999999999999998 83 5799999984
No 239
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.88 E-value=0.084 Score=48.84 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.-+|-++|-.+..-. -++++|+|.|..|..+|..|... | ..|+++++++-
T Consensus 8 S~~d~i~r~t~~~l~-Gk~vvV~GYG~vG~g~A~~lr~~-G-----a~V~V~e~DPi 57 (162)
T PF00670_consen 8 SLVDGIMRATNLMLA-GKRVVVIGYGKVGKGIARALRGL-G-----ARVTVTEIDPI 57 (162)
T ss_dssp HHHHHHHHHH-S--T-TSEEEEE--SHHHHHHHHHHHHT-T------EEEEE-SSHH
T ss_pred hHHHHHHhcCceeeC-CCEEEEeCCCcccHHHHHHHhhC-C-----CEEEEEECChH
Confidence 345566655543222 25899999999999999999877 7 89999999883
No 240
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.86 E-value=0.053 Score=56.30 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|+|+|..|+.++..|+.. |. .+++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~-Gv----g~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGA-GV----GHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6899999999999999999998 83 5899999875
No 241
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=95.84 E-value=0.11 Score=51.73 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..-||+|+|+|++|.|.|..+..+ |. . .++.++|-++++++- + .+.-+|. ..+++
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k-~L-a--del~lvDv~~dklkG---E----~MDLqH~--------s~f~~------ 73 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLK-GL-A--DELVLVDVNEDKLKG---E----MMDLQHG--------SAFLS------ 73 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHh-hh-h--hceEEEecCcchhhh---h----hhhhccc--------ccccc------
Confidence 457999999999999999988776 52 1 478999998865432 1 1221110 01111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~ 185 (465)
.+++.+..|.. +-.+++++|+..-.. -++.++..+..| .
T Consensus 74 -----------------------~~~V~~~~Dy~-~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-S 128 (332)
T KOG1495|consen 74 -----------------------TPNVVASKDYS-VSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-S 128 (332)
T ss_pred -----------------------CCceEecCccc-ccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-C
Confidence 13577777775 357899999987432 133344444444 2
Q ss_pred ccCCCCEEEEeeccccc
Q 012349 186 ERITVPVIISLAKGVEA 202 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~~ 202 (465)
+ +++++.++|-++.
T Consensus 129 p---d~~llvvSNPVDi 142 (332)
T KOG1495|consen 129 P---DCILLVVSNPVDI 142 (332)
T ss_pred C---CeEEEEecCchHH
Confidence 3 6888888887754
No 242
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=95.83 E-value=0.053 Score=47.01 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=30.1
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 159 ~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.++|+||+|+|.....+++..+.+.+.+ ++++|.++.-+
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~---g~~viD~s~~~ 102 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEA---GVKVIDLSSAF 102 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcC---CCEEEECCccc
Confidence 4789999999999998888766555555 67888777444
No 243
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.084 Score=56.02 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=51.0
Q ss_pred CceEEEECccHHHHHHH--HHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFT--AMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA--~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+||+|||+|+.++.-- ..+.+. -.+. ..++.|+|.+++..+.+. .+.+. ++...
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~-e~l~-~~el~L~Did~~r~~~i~------~~~~~------------~v~~~--- 59 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLART-EELP-VRELALYDIDEERLKIIA------ILAKK------------LVEEA--- 59 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcC-ccCC-cceEEEEeCCHHHHHHHH------HHHHH------------HHHhh---
Confidence 47999999999877632 222222 1122 258999999987655211 11110 11110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps 170 (465)
+ . + ..+..|+|.++|+.+||+|+.++-.
T Consensus 60 -g---~-----------------~-~kv~~ttd~~eAl~gAdfVi~~~rv 87 (442)
T COG1486 60 -G---A-----------------P-VKVEATTDRREALEGADFVITQIRV 87 (442)
T ss_pred -C---C-----------------C-eEEEEecCHHHHhcCCCEEEEEEee
Confidence 0 0 0 1477899999999999999998854
No 244
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.78 E-value=0.037 Score=50.72 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=31.3
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 46 IaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|+|+|+ |.+|..++..|.+. | ++|+...|++++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~-----~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-G-----HEVTALVRSPSKAE 36 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----SEEEEEESSGGGHH
T ss_pred eEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCchhcc
Confidence 789997 99999999999999 7 99999999986443
No 245
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.76 E-value=0.075 Score=50.59 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|+|+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 20 s~VlviG~gglGsevak~L~~~-GV----g~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLA-GI----DSITIVDHRL 53 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence 6899999999999999999999 84 6899999874
No 246
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.73 E-value=0.066 Score=53.93 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=44.3
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|-++-.|-.-.-=..-|++.+.. ...+++.|+|+|..|.+++..|++. |. .+|++++|+.
T Consensus 99 ~~g~l~G~NTD~~G~~~~l~~~~~~--~~~k~vlI~GAGGagrAia~~La~~-G~----~~V~I~~R~~ 160 (289)
T PRK12548 99 DDGKLTGHITDGLGFVRNLREHGVD--VKGKKLTVIGAGGAATAIQVQCALD-GA----KEITIFNIKD 160 (289)
T ss_pred ECCEEEEEecCHHHHHHHHHhcCCC--cCCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCc
Confidence 4676666666555555555543321 2336899999999999999999988 71 3599999986
No 247
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.69 E-value=0.098 Score=52.31 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=44.1
Q ss_pred hHHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.++|.+...+++|..... ..+|+|+|+|.+|+.+|..|++. |. .+++++|.+.-.
T Consensus 9 ~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~-GV----g~itLiD~D~V~ 66 (268)
T PRK15116 9 WRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALART-GI----GAITLIDMDDVC 66 (268)
T ss_pred HHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCEec
Confidence 457888888888754332 36899999999999999999999 73 589999987533
No 248
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.64 E-value=0.059 Score=58.22 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=46.8
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-++-.|-.-.-=+.-||+.- . ....++++|+|+|.+|.+++..|++. | .+|++++|+.+.++
T Consensus 305 ~~g~l~G~NTD~~G~~~~l~~~~-~-~~~~k~vlIiGaGgiG~aia~~L~~~-G-----~~V~i~~R~~~~~~ 369 (477)
T PRK09310 305 RNGKIEGYNTDGEGLFSLLKQKN-I-PLNNQHVAIVGAGGAAKAIATTLARA-G-----AELLIFNRTKAHAE 369 (477)
T ss_pred eCCEEEEEecCHHHHHHHHHhcC-C-CcCCCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 46766666665555555555421 1 22346899999999999999999988 7 78999999876544
No 249
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.62 E-value=0.043 Score=51.61 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=32.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+++.|+|+ |.+|.+++..|++. | ++|++++|+.++++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g-----~~V~l~~R~~~~~~ 66 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-G-----ARVVLVGRDLERAQ 66 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 478999996 99999999999988 7 79999999876544
No 250
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.59 E-value=0.082 Score=55.26 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 42 ~~VliiG~GglG~~v~~~La~~-Gv----g~i~ivD~D~ 75 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASA-GV----GTITLIDDDT 75 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEeCCE
Confidence 6899999999999999999998 83 5899999874
No 251
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.59 E-value=0.069 Score=46.48 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=50.9
Q ss_pred ceEEEEC----ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 44 LRIVGVG----AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 44 mkIaIIG----aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
++|+||| .+.+|..+...|.++ | ++|+.++.....++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G-----~~v~~Vnp~~~~i~--------------------------------- 41 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA-G-----YEVYPVNPKGGEIL--------------------------------- 41 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT-T------EEEEESTTCSEET---------------------------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC-C-----CEEEEECCCceEEC---------------------------------
Confidence 4799999 699999999999987 7 78877755432111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~ 183 (465)
.+.+..+++|.-...|++++++|+..+.++++++...
T Consensus 42 ---------------------------G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 42 ---------------------------GIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp ---------------------------TEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH
T ss_pred ---------------------------cEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc
Confidence 2334455555236789999999999999999998764
No 252
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.56 E-value=0.043 Score=57.58 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|||+|+|| |..|..+...|.++ . .++|+++.++.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h-P----~~el~~l~s~~ 73 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH-P----DFEITVMTADR 73 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC-C----CCeEEEEEChh
Confidence 4579999998 99999999999876 2 26888887754
No 253
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.55 E-value=0.046 Score=56.16 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=33.6
Q ss_pred CHHHHhcCCCEEEEecCc-chHHHHHHH-HHHhhhccCCCCEEEEeeccc
Q 012349 153 NLQEAVWDADIVINGLPS-TETKEVFEE-ISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps-~~l~~vl~~-l~~~l~~~~~~~ivIs~~kGi 200 (465)
|.++.+..+|+|+++.|- ..++.++.+ +...+++ +.++|++.-|=
T Consensus 210 d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~---g~vlVN~aRG~ 256 (336)
T KOG0069|consen 210 DIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKD---GAVLVNTARGA 256 (336)
T ss_pred CHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCC---CeEEEeccccc
Confidence 455678899999999995 577777744 5556666 67888888773
No 254
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.53 E-value=0.066 Score=51.20 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
..++|.|||+|.+|...+..|.+. | ++|++++++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~-g-----a~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY-G-----AHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEcCC
Confidence 346999999999999999999988 7 899999865
No 255
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.52 E-value=0.1 Score=52.95 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=27.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~ 83 (465)
++||+|||+|.+|+.+...+.+. . +.+ +.+++++++
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~-~----~velvAVvdid~e 40 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRS-E----HLEPGAMVGIDPE 40 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcC-C----CcEEEEEEeCChh
Confidence 57999999999999988777754 2 134 457788764
No 256
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.52 E-value=0.17 Score=51.15 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=43.8
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|-++-.|-.-.-=+.-|+..- .....+++.|+|+|..+.+++..|+.. |. .+|++++|+++
T Consensus 97 ~~g~l~G~NTD~~Gf~~~l~~~~--~~~~~k~vlvlGaGGaarAi~~~l~~~-g~----~~i~i~nRt~~ 159 (288)
T PRK12749 97 DDGYLRGYNTDGTGHIRAIKESG--FDIKGKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDE 159 (288)
T ss_pred cCCEEEEEecCHHHHHHHHHhcC--CCcCCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCcc
Confidence 46767666655544444444321 112336899999999999999999887 62 58999999864
No 257
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.51 E-value=0.036 Score=57.24 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.|||+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA-GV----GKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCc
Confidence 6899999999999999999999 82 4899999975
No 258
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.46 E-value=0.08 Score=53.65 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=61.4
Q ss_pred CCceEEEECccHHH-HHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamG-salA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+++||+|||+|.++ ...+..+... +.. -.-|-+++++++.++.. -+. |
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~-~~~--~~~vav~d~~~~~a~~~--------a~~-------------~------- 50 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL-GGG--LELVAVVDRDPERAEAF--------AEE-------------F------- 50 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhC-CCc--eEEEEEecCCHHHHHHH--------HHH-------------c-------
Confidence 46899999999655 4577777665 300 03477788888654421 000 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
++ ...+|+++.+.+ .|+|++|+|+....++..... .. +.. |.|-
T Consensus 51 --------------------------~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL---~a---Gkh-Vl~E 97 (342)
T COG0673 51 --------------------------GIAKAYTDLEELLADPDIDAVYIATPNALHAELALAAL---EA---GKH-VLCE 97 (342)
T ss_pred --------------------------CCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHH---hc---CCE-EEEc
Confidence 11 356778887765 599999999988777764432 33 333 4577
Q ss_pred cccccc
Q 012349 198 KGVEAE 203 (465)
Q Consensus 198 kGi~~~ 203 (465)
|-+...
T Consensus 98 KPla~t 103 (342)
T COG0673 98 KPLALT 103 (342)
T ss_pred CCCCCC
Confidence 777653
No 259
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.46 E-value=0.067 Score=52.66 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..||+|||+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GV----GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence 36899999999999999999998 83 5899998875
No 260
>PRK08223 hypothetical protein; Validated
Probab=95.43 E-value=0.095 Score=52.87 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=38.1
Q ss_pred hHHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+||...=..++|...+. ..+|.|||+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~a-GV----G~i~lvD~D~ 61 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARL-GI----GKFTIADFDV 61 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHh-CC----CeEEEEeCCC
Confidence 455554333334333322 25899999999999999999999 84 5899999875
No 261
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.34 E-value=0.1 Score=51.19 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=31.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.||+|+|+|.+|+.+|..|++. |. .+++++|.+.-..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~ 61 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAA-GV----GNLTLLDFDTVSL 61 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCcccc
Confidence 6899999999999999999998 83 5799998876433
No 262
>PRK04148 hypothetical protein; Provisional
Probab=95.31 E-value=0.087 Score=47.25 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=62.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+.+||.+||+| .|..+|..|++. | ++|+.+|.+++.++.++.. ....+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~-G-----~~ViaIDi~~~aV~~a~~~---------------------~~~~v~--- 64 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKES-G-----FDVIVIDINEKAVEKAKKL---------------------GLNAFV--- 64 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHh---------------------CCeEEE---
Confidence 34799999999 999999999988 7 9999999999866542110 011110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE 186 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~ 186 (465)
. .+ +..++ +.-+++|+|.-.=|+..+..-+-+++.-+..
T Consensus 65 d------------------------Dl-f~p~~-~~y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 65 D------------------------DL-FNPNL-EIYKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred C------------------------cC-CCCCH-HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 0 01 22333 3468899999999998888888888876654
No 263
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.30 E-value=0.087 Score=54.21 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=59.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+|||+|+|| |..|..+...|+++ |. +..++....++...-+. ..+.+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~-~h--p~~~l~~l~s~~~~g~~------------------------l~~~g~---- 49 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER-NF--PVDKLRLLASARSAGKE------------------------LSFKGK---- 49 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CC--CcceEEEEEccccCCCe------------------------eeeCCc----
Confidence 479999997 99999999999886 50 01245666665421110 001100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+.+.+.....+.++|+||+|+|+...+++.+++.. . +..||.++.-+
T Consensus 50 -------------------------~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~~~~~---~---G~~VIDlS~~~ 97 (334)
T PRK14874 50 -------------------------ELKVEDLTTFDFSGVDIALFSAGGSVSKKYAPKAAA---A---GAVVIDNSSAF 97 (334)
T ss_pred -------------------------eeEEeeCCHHHHcCCCEEEECCChHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 122221111345789999999999988888877643 3 46788777443
No 264
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.26 E-value=0.037 Score=57.64 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=29.7
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhh
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (465)
|.|+|+|.+|++++..|++. + .+ +|++.+|+.+.+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-~----~~~~v~va~r~~~~~~~ 38 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-G----PFEEVTVADRNPEKAER 38 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-T----CE-EEEEEESSHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC-C----CCCcEEEEECCHHHHHH
Confidence 78999999999999999988 4 14 89999999876554
No 265
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.24 E-value=0.088 Score=56.58 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.-++|+|+|.|.+|..+|..+... | .+|+++++++.
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~-G-----a~ViV~e~dp~ 288 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGF-G-----ARVVVTEIDPI 288 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCch
Confidence 346899999999999999999876 6 78999988864
No 266
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.21 E-value=0.095 Score=54.75 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
...+|+|||+|.+|...+..+... | .+|++++|+++..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-G-----a~V~v~d~~~~~~~ 204 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-G-----ATVTILDINIDRLR 204 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHH
Confidence 456899999999999999999877 7 78999999876443
No 267
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.21 E-value=0.11 Score=53.74 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=21.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDS 65 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~ 65 (465)
+|+||+|+|| |..|..+...|.++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~ 27 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEER 27 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhC
Confidence 4589999998 99999999999975
No 268
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.12 E-value=0.1 Score=47.91 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
..++|.|||+|.+|...+..|.+. | ++|++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~-g-----a~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT-G-----AFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcC
Confidence 347899999999999999999988 7 89999953
No 269
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.05 E-value=0.059 Score=54.24 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=27.8
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW 78 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~ 78 (465)
-++|+|||. |.||..+|..|.++ | +.|++|
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~-g-----atVtv~ 188 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDK-N-----ATVTLT 188 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHC-C-----CEEEEE
Confidence 379999999 99999999999988 7 899999
No 270
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.04 E-value=0.12 Score=44.09 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=30.7
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
|.|+|.|.+|..++..|.+. + .+|++++++++.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~-----~~vvvid~d~~~~~~ 36 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-G-----IDVVVIDRDPERVEE 36 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-T-----SEEEEEESSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-C-----CEEEEEECCcHHHHH
Confidence 67999999999999999987 5 689999999876654
No 271
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=95.01 E-value=0.21 Score=50.33 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=25.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~ 83 (465)
+||+|||+|.||+.++..+.+. . +.+ +.+++++++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~----~~elvaV~d~d~e 37 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-E----HLEMVAMVGIDPE 37 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-C----CcEEEEEEeCCcc
Confidence 6999999999999887777654 2 134 456777765
No 272
>PRK06153 hypothetical protein; Provisional
Probab=94.98 E-value=0.13 Score=53.88 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|+.++..|++. |. .+++|+|.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~-GV----geI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT-PV----REIHLFDGDD 210 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 5899999999999999999999 83 5899998874
No 273
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.98 E-value=0.13 Score=53.01 Aligned_cols=154 Identities=13% Similarity=0.148 Sum_probs=93.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...+.|+.||.+.||.-++.-.+++ | +.|..|.|...++++. +.... +-.+
T Consensus 4 ~~~~digLiGLaVMGqnLiLN~~d~-G-----f~v~~yNRT~skvD~f--------lanea----------k~~~----- 54 (487)
T KOG2653|consen 4 TPKADIGLIGLAVMGQNLILNIADK-G-----FTVCAYNRTTSKVDEF--------LANEA----------KGTK----- 54 (487)
T ss_pred ccccchhhhhHhhhhhhhhhccccc-C-----ceEEEeccchHhHHHH--------HHHhh----------cCCc-----
Confidence 3457899999999999999999999 8 8999999998887752 21110 0011
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHH---HhcCCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEe
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISL 196 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~e---al~~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~ 196 (465)
+.-..++++ -++..-.|++-|++ ..+..++++|.|++.+ +.+||--
T Consensus 55 ---------------------------i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~Lek---gDiIIDG 104 (487)
T KOG2653|consen 55 ---------------------------IIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLEK---GDIIIDG 104 (487)
T ss_pred ---------------------------ccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcCC---CCEEEeC
Confidence 111233433 24667788888876 4688889999999987 5677654
Q ss_pred eccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHc
Q 012349 197 AKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265 (465)
Q Consensus 197 ~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~ 265 (465)
-|.--.++ ..+..+ +.+ .|. ..+=+|-+-.+|.++.-|+ .+.+++.+....++.+|+
T Consensus 105 GNs~y~dT-----~RR~~e-l~k-~Gi----lfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~ifq 161 (487)
T KOG2653|consen 105 GNSEYQDT-----ERRCRE-LAK-KGI----LFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIFQ 161 (487)
T ss_pred CcccCcch-----HHHHHH-HHh-cCc----EEEecCccCcccccccCCc-cCCCCChHHHHHHHHHHH
Confidence 44332221 111111 211 221 2233455555666654455 345566655566666665
No 274
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.96 E-value=0.052 Score=43.51 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
||+|||+|..|.-+|..|++. | .+|+++.+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-g-----~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-G-----KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-C-----cEEEEEeccchhh
Confidence 689999999999999999988 7 8999999988655
No 275
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=94.92 E-value=0.11 Score=57.57 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.|+|+|..|+..|..|+.. |. .+++++|.+.
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~-GV----g~ItlVD~D~ 372 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGW-GV----RHITFVDNGK 372 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCE
Confidence 6899999999999999999998 83 5788998764
No 276
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.90 E-value=0.1 Score=55.81 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=62.1
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 42 ~~mkIaIIGa----GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
.+.+|+|||+ |.+|..+...|.+. |+ . .+|+.++.+.+. +.
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~-gf-~--g~v~~Vnp~~~~-----------------------------i~-- 50 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEG-GY-K--GKIYPVNPKAGE-----------------------------IL-- 50 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhC-CC-C--CcEEEECCCCCc-----------------------------cC--
Confidence 5678999999 88999999999877 61 1 245444433211 11
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
.+.+..++++.-...|+++++||+....++++++... . -..++.++
T Consensus 51 -----------------------------G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~-g----v~~~vi~s 96 (447)
T TIGR02717 51 -----------------------------GVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK-G----VKGAVVIT 96 (447)
T ss_pred -----------------------------CccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc-C----CCEEEEEC
Confidence 1223344445445679999999999999999998753 2 13466688
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
.|+..
T Consensus 97 ~gf~e 101 (447)
T TIGR02717 97 AGFKE 101 (447)
T ss_pred CCccc
Confidence 88864
No 277
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.87 E-value=0.21 Score=51.69 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=27.0
Q ss_pred CeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHH
Q 012349 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 147 ~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~ 181 (465)
.+.+..+.++.+.++|+||.|+|+....+..+...
T Consensus 65 ~i~V~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~ 99 (341)
T PRK04207 65 GIPVAGTIEDLLEKADIVVDATPGGVGAKNKELYE 99 (341)
T ss_pred ceEEcCChhHhhccCCEEEECCCchhhHHHHHHHH
Confidence 35566777777788999999999988777766544
No 278
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.74 E-value=0.21 Score=48.65 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=30.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~--~V~l~~r~~ 82 (465)
..+||.|+|+|.+|.++|..|.+. |. . +|++++|+.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~-G~----~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAA-GA----KPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHc-Cc----CcceEEEEeCCC
Confidence 346999999999999999999987 72 3 799999984
No 279
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.72 E-value=0.54 Score=48.04 Aligned_cols=238 Identities=16% Similarity=0.178 Sum_probs=133.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++.++.++|+|....-+|.-+..+ | +..+-+++|....- +++.+.++.+- ..++.+-. ..
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h-~----d~~lg~~~r~s~rs-----e~l~qala~~~---------ql~l~~q~-ea 62 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAH-G----DARLGLYNRPSTRS-----ERLKQALALTP---------QLYLQGQG-EA 62 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhc-c----CceeeccCCCCchh-----HHHHHHHhcCC---------eEEEEecc-HH
Confidence 567899999999999999999888 6 26788999876543 34444454331 23333210 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH-hhhccCCCCEEEEeeccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGV 200 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~-~l~~~~~~~ivIs~~kGi 200 (465)
...+. ..+.+ -....|++++..+.+-+|+|||.+...+++++|.- .++. .+..++||-+ +
T Consensus 63 -hr~le------g~~~i---------d~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~-vk~viLiSpt--f 123 (431)
T COG4408 63 -HRQLE------GSVTI---------DCYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQ-VKSVILISPT--F 123 (431)
T ss_pred -HHhhc------Cceeh---------hHHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhcc-ccEEEEeccc--c
Confidence 00000 00000 11346788888999999999999999999999843 3332 2123444443 3
Q ss_pred cccccccccCCCHHHHHHhHhCCCC-----------ccEEEEeCCchhhhhhccCceEEEEe---CChhHHHHHHHHHcC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPI-----------ENILYLGGPNIASEIYNKEYANARIC---GAEKWRKPLAKFLRR 266 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~-----------~~i~vlsGP~~a~ev~~g~~t~~~~~---~~~~~~~~l~~ll~~ 266 (465)
+.. ..++..+.+ +|... .++.--.-|+++---+-.+- +..+ ++...++.+..+|..
T Consensus 124 Gsn-------~lv~~~mnk-~~~daeViS~SsY~~dTk~id~~~p~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~aq 193 (431)
T COG4408 124 GSN-------LLVQNLMNK-AGRDAEVISLSSYYADTKYIDAEQPNRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLAQ 193 (431)
T ss_pred ccc-------HHHHHHHhh-hCCCceEEEeehhcccceeecccCcchHHHHHHhHh--eeeccCCCCChHHHHHHHHHHh
Confidence 322 122233322 23211 01111123555543332221 2222 245678899999999
Q ss_pred CCCeEEecCChHHHHHHHH--------HHHHHHHHHHhh--hccc-----C-CCcchHH--HHHHHHHHHHHHHHHHhCC
Q 012349 267 PHFTVWDNGDLVTHEVMGG--------LKNVYAIGAGMV--AALT-----N-ESATSKS--VYFAHCTSEMVFITHLLAE 328 (465)
Q Consensus 267 ~g~~v~~s~Di~gve~~ga--------lKNviAia~Gi~--~gl~-----~-g~~n~~a--~li~~~~~E~~~l~~a~G~ 328 (465)
.|+.+.+.+.....|-.+. +.|=.++.+=+. ..-+ + .++-+-+ .-|+..-.|+.++..++|.
T Consensus 194 ~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~v 273 (431)
T COG4408 194 HGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGV 273 (431)
T ss_pred cCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999888776433 344444433221 0011 1 1222221 2355667788999999987
No 280
>PRK07411 hypothetical protein; Validated
Probab=94.70 E-value=0.091 Score=55.28 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..||+|||+|..|+.++..|+.. |. ..++++|.+.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~-Gv----g~l~lvD~D~ 72 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA-GI----GRIGIVDFDV 72 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 36899999999999999999999 83 5799998875
No 281
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.68 E-value=0.11 Score=56.92 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=34.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.-+|.|+|+|.+|..++..|.++ | ++|.+++.|++++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g-----~~vvvId~d~~~~~~ 455 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-G-----IPLVVIETSRTRVDE 455 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 35799999999999999999988 7 899999999887664
No 282
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.65 E-value=0.26 Score=49.68 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=48.4
Q ss_pred CCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+|-++-.|-.-.-=+.-|++.-.-......+|+|+|||..+.+++..|++. |. .++++++|+.++.++
T Consensus 98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g~----~~i~V~NRt~~ra~~ 165 (283)
T COG0169 98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-GA----KRITVVNRTRERAEE 165 (283)
T ss_pred CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 687777676555544455543211122346899999999999999999998 72 589999999876553
No 283
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.57 E-value=0.33 Score=50.69 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..||+|+|+|..|+.++..|++. |. .+++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~-Gv----g~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA-GV----GTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 36899999999999999999998 83 4799999874
No 284
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.53 E-value=0.046 Score=57.12 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|.+|.++|..|++. | ++|++++++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g-----~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-G-----YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 5899999999999999999998 7 8999999875
No 285
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=94.45 E-value=0.23 Score=49.34 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=86.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
++|||+|.|+ |.||..+...+.+. . +.+ +-.++|.+.... -+..+ .+-+.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~-~----~~~L~aa~~~~~~~~~----------g~d~g-----------e~~g~-- 52 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEA-P----DLELVAAFDRPGSLSL----------GSDAG-----------ELAGL-- 52 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcC-C----CceEEEEEecCCcccc----------ccchh-----------hhccc--
Confidence 3689999999 99999999999876 2 133 334555542110 00000 01111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+ .-.+.+++|+..+..++|++|=.+-+..+.+.++....+ +..+|.-|.|
T Consensus 53 --~----------------------~~gv~v~~~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~------~~~lVIGTTG 102 (266)
T COG0289 53 --G----------------------LLGVPVTDDLLLVKADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTG 102 (266)
T ss_pred --c----------------------ccCceeecchhhcccCCCEEEECCCchhhHHHHHHHHHc------CCCeEEECCC
Confidence 0 013456677777788999999888777776666655432 2345566779
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
++.+. . +.+++..- .+.++..|||+--+.-- ...+++..+.|. ++.+.+
T Consensus 103 f~~e~-----~----~~l~~~a~----~v~vv~a~NfSiGvnll----------~~l~~~aak~l~--~~DiEI 151 (266)
T COG0289 103 FTEEQ-----L----EKLREAAE----KVPVVIAPNFSLGVNLL----------FKLAEQAAKVLD--DYDIEI 151 (266)
T ss_pred CCHHH-----H----HHHHHHHh----hCCEEEeccchHHHHHH----------HHHHHHHHHhcC--CCCEEe
Confidence 98762 1 33443321 13467788887532210 234567777776 555543
No 286
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.44 E-value=0.33 Score=48.86 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=47.7
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+|.++-.|-.-.-=+.-|+... .....+++.|+|+|..|.+++..|++. |. .++++++|+.++++.
T Consensus 100 ~~g~l~G~NTD~~Gf~~~L~~~~--~~~~~k~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 100 ATGHTTGHNTDVSGFGRGMEEGL--PNAKLDSVVQVGAGGVGNAVAYALVTH-GV----QKLQVADLDTSRAQA 166 (283)
T ss_pred CCCcEEEEcCCHHHHHHHHHhcC--cCcCCCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEcCCHHHHHH
Confidence 47777777765555444454311 122346899999999999999999987 62 589999999875543
No 287
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.23 E-value=0.67 Score=45.33 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|+|+|.+|+.++..|++. |. .+++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~-GV----g~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS-GV----GKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 5899999999999999999999 83 5899998875
No 288
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.23 E-value=0.35 Score=47.39 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=29.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||.|+|+|+.|+.++..|+.. |. .+++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~-Gv----g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GF----GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 689999999999999999998 83 5799999875
No 289
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.16 E-value=0.059 Score=50.82 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=33.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|||+|||| |..|+.|+.-..+. | |+|+-+.|++.++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-G-----HeVTAivRn~~K~~ 38 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-G-----HEVTAIVRNASKLA 38 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-C-----CeeEEEEeChHhcc
Confidence 79999997 99999999999988 7 99999999987543
No 290
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.10 E-value=0.14 Score=53.86 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.|||+|..|+.+|..|+.. |. .+++++|.+.
T Consensus 43 ~~VlviG~GGlGs~va~~La~~-Gv----g~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAA-GV----GTLGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCE
Confidence 6899999999999999999998 83 5799998875
No 291
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=94.10 E-value=0.064 Score=55.99 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|+|+|||+|.+|.+.|..|++. | ++|.+++++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~-g-----~~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA-G-----HEVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCC
Confidence 6899999999999999999998 7 8999999975
No 292
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.06 E-value=0.17 Score=52.26 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=39.5
Q ss_pred hHHHhHHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 25 LEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
+-+-++.-+.+++. .-..++|.|+|| |.||+.++..|+.+.| ..++++++|+++.+
T Consensus 138 l~~~V~la~~~lg~-~l~~k~VLVtGAtG~IGs~lar~L~~~~g----v~~lilv~R~~~rl 194 (340)
T PRK14982 138 ICRQVEQNAPRLGI-DLSKATVAVVGATGDIGSAVCRWLDAKTG----VAELLLVARQQERL 194 (340)
T ss_pred HHHHHHHhHHHhcc-CcCCCEEEEEccChHHHHHHHHHHHhhCC----CCEEEEEcCCHHHH
Confidence 34445555666663 234478999999 8999999999975413 15799999986543
No 293
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.06 E-value=0.45 Score=48.04 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.||.|+|+|.+|+.+|..|+.. |. ..++++|.+.-
T Consensus 20 s~VLIvG~gGLG~EiaKnLala-GV----g~itI~D~d~v 54 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILA-GV----KSVTLHDTKPC 54 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc-CC----CeEEEEcCCcc
Confidence 5899999999999999999999 83 58999998753
No 294
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.05 E-value=0.17 Score=56.22 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=34.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.++|.|+|.|.+|..++..|.+. | +++++++.|+++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-K-----MRITVLERDISAVNL 438 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 46899999999999999999988 6 899999999987664
No 295
>PRK06270 homoserine dehydrogenase; Provisional
Probab=93.97 E-value=0.32 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.5
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
.+||+|+|+|.+|..++..|.++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 47999999999999999998754
No 296
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.88 E-value=0.12 Score=52.31 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=31.0
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||.|.|+ |.+|+.++..|.++ | ++|+..+|+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g-----~~V~~l~R~~~ 35 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-G-----YQVRCLVRNLR 35 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEEcChH
Confidence 69999996 99999999999988 7 89999999864
No 297
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=93.85 E-value=0.25 Score=50.47 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.9
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
...++|++|+|+|...-.++.+++.. . +..||.++.-+
T Consensus 47 ~~~~~DvvFlalp~~~s~~~~~~~~~---~---g~~VIDlSadf 84 (313)
T PRK11863 47 LLNAADVAILCLPDDAAREAVALIDN---P---ATRVIDASTAH 84 (313)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECChhh
Confidence 34678999999999987777777643 2 56788777443
No 298
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.83 E-value=0.19 Score=50.64 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.0
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
-++|+|||.|. +|..+|..|... | ..|+++.++
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~-g-----atVtv~~s~ 191 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQK-N-----ASVTILHSR 191 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 37999999988 999999999987 6 788877653
No 299
>PRK06753 hypothetical protein; Provisional
Probab=93.60 E-value=0.086 Score=54.17 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=31.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|+|||+|.-|.++|..|+++ | ++|+++.+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-G-----HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 6899999999999999999998 8 89999998874
No 300
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.53 E-value=0.22 Score=42.86 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=32.9
Q ss_pred EecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 150 VVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 150 ~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++++++.+. +.|+||-|+++....+.+.++ ++. +..||++.||...
T Consensus 47 ~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~---L~~---G~~VVt~nk~ala 95 (117)
T PF03447_consen 47 FTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA---LER---GKHVVTANKGALA 95 (117)
T ss_dssp EESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH---HHT---TCEEEES-HHHHH
T ss_pred ccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH---HHC---CCeEEEECHHHhh
Confidence 5678888777 899999999988777665554 444 5679999998544
No 301
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.45 E-value=0.28 Score=46.94 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=29.3
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 46 IaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|+|+ |..|..++..|.+. + ++|++..|+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~-----~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-G-----FSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----GCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhC-C-----CCcEEEEeccc
Confidence 789997 99999999999987 6 89999999973
No 302
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.37 E-value=0.34 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.3
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
++||+|+|+|.+|..++..|.++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~ 25 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEEN 25 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHh
Confidence 47999999999999999888654
No 303
>PRK07236 hypothetical protein; Provisional
Probab=93.32 E-value=0.12 Score=53.63 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+++|+|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA-G-----WDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 457999999999999999999998 7 89999998764
No 304
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.23 E-value=0.37 Score=49.67 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=27.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|+||+|+|+ |.-|.-|...|+.+ - ..++.+++.++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H-p----~ve~~~~ss~~ 37 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH-P----DVELILISSRE 37 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC-C----CeEEEEeechh
Confidence 4689999997 99999999999977 2 24666665544
No 305
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.22 E-value=0.43 Score=40.41 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...+|.|||+|.+|..=+..|.+. | .+|++++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~-g-----A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA-G-----AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC-T-----BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCch
Confidence 446899999999999999999888 7 8999999874
No 306
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.19 E-value=0.62 Score=48.23 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=27.3
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++||+|+| +|.+|..+...|.+. . ..++..+.+++
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p----~~el~~~~~s~ 38 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-P----WFEVTALAASE 38 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-C----CceEEEEEcCh
Confidence 47999998 799999999999866 3 14777765554
No 307
>PRK07877 hypothetical protein; Provisional
Probab=93.16 E-value=0.22 Score=56.44 Aligned_cols=52 Identities=27% Similarity=0.263 Sum_probs=39.5
Q ss_pred HHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|.+.=+.++|..++. ..||+|+|+| +|+..|..|+.. |.+ .+++|+|.+.
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~Lara-Gvv---G~l~lvD~D~ 141 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAE-GLC---GELRLADFDT 141 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHc-cCC---CeEEEEcCCE
Confidence 46777666666655444 3689999999 999999999998 721 3788998875
No 308
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.13 E-value=0.52 Score=48.17 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=31.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||.|+|+|++|+.++..|+.. |. .+++++|.+.-...
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-Gv----g~ItIvD~D~Ve~s 37 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GF----GEIHIIDLDTIDLS 37 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-cC----CeEEEEcCCCcchh
Confidence 689999999999999999998 83 58999998754333
No 309
>PRK06847 hypothetical protein; Provisional
Probab=93.09 E-value=0.13 Score=52.86 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++++|+|||+|.-|.++|..|++. | ++|+++.++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-G-----IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 457899999999999999999998 7 89999998764
No 310
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.06 E-value=0.13 Score=53.30 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+++|+|||+|..|.++|..|++. | ++|+++.+++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g-----~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-G-----IKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEeeCcc
Confidence 47999999999999999999998 7 89999999864
No 311
>PRK05868 hypothetical protein; Validated
Probab=92.93 E-value=0.12 Score=53.62 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|++|+|+|+|.-|.++|..|++. | ++|+++.+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH-G-----YSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEcCCCC
Confidence 57899999999999999999998 7 89999998765
No 312
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=92.88 E-value=0.15 Score=51.08 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=29.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.+|+|||+|--|.++|..|+++ | ++|+++.+++..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-G-----IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-T-----CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-c-----cccccchhcccc
Confidence 4799999999999999999999 8 899999998653
No 313
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.86 E-value=0.36 Score=53.92 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=35.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
..+|.|+|.|.+|..++..|.++ | .++++++.|+++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-G-----VKMTVLDHDPDHIET 438 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 46899999999999999999988 6 899999999987765
No 314
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.71 E-value=0.88 Score=47.22 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=28.6
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+.+.|++|+|+|+..-.++...+.. . +..||.++.-+
T Consensus 65 ~~~~~Divf~a~~~~~s~~~~~~~~~---~---G~~VID~Ss~f 102 (347)
T PRK06728 65 SFEGVDIAFFSAGGEVSRQFVNQAVS---S---GAIVIDNTSEY 102 (347)
T ss_pred HhcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEECchhh
Confidence 35789999999999987777776543 2 57788877554
No 315
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=92.66 E-value=0.76 Score=47.63 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=29.1
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+++.++|+||+|+|+....++..++.. . +..||.++.-+
T Consensus 65 ~~~~~~D~vf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~f 103 (344)
T PLN02383 65 DSFDGVDIALFSAGGSISKKFGPIAVD---K---GAVVVDNSSAF 103 (344)
T ss_pred HHHcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 446889999999999988877776543 2 56788877544
No 316
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=92.62 E-value=0.34 Score=49.08 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.7
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||.|||+|..|+.++..|+.. |. .+++++|.+.-
T Consensus 1 kVlVVGaGGlG~eilknLal~-Gv----g~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-GF----RNIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEe
Confidence 689999999999999999998 83 57899988753
No 317
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=92.59 E-value=0.16 Score=52.78 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+.+|+|||+|..|.++|..|++. | ++|.++++.+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~-G-----~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA-G-----LSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEeCCC
Confidence 446899999999999999999998 7 8999999875
No 318
>PRK07588 hypothetical protein; Provisional
Probab=92.38 E-value=0.16 Score=52.77 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|+|||+|..|.++|..|++. | ++|+++.+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-G-----HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-C-----CceEEEeCCCC
Confidence 5899999999999999999998 8 89999998764
No 319
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=92.30 E-value=0.86 Score=47.00 Aligned_cols=37 Identities=32% Similarity=0.336 Sum_probs=26.5
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
+...++|+||+|+|+....++.+.+.. . +..+|.++.
T Consensus 69 ~~~~~~DvVf~a~p~~~s~~~~~~~~~---~---G~~VIDlsg 105 (341)
T TIGR00978 69 VASKDVDIVFSALPSEVAEEVEPKLAE---A---GKPVFSNAS 105 (341)
T ss_pred HHhccCCEEEEeCCHHHHHHHHHHHHH---C---CCEEEECCh
Confidence 346789999999999988877765543 2 455666653
No 320
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.22 E-value=0.46 Score=38.72 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
..++++|+|+|.+|..++..+.+. + ..+|.+|+|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~-~----~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADE-G----GKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C----CCEEEEEcC
Confidence 347899999999999999999987 4 268999988
No 321
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=92.19 E-value=0.9 Score=46.94 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=59.3
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+.+||+|||| |..|..+...|++. . + |..++..+..+.. +.+ +..+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~-~-h-P~~~l~~laS~~s-aG~-----------------------~~~~~~---- 51 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAER-Q-F-PVGELYALASEES-AGE-----------------------TLRFGG---- 51 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcC-C-C-CceEEEEEEccCc-CCc-----------------------eEEECC----
Confidence 4589999998 99999999999984 1 1 1146666644321 110 000111
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~e-al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
..+.+. ++++ ...++|++|+|+|+..-.++.+++.. . +..||.++.-
T Consensus 52 -------------------------~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~ 99 (336)
T PRK08040 52 -------------------------KSVTVQ-DAAEFDWSQAQLAFFVAGREASAAYAEEATN---A---GCLVIDSSGL 99 (336)
T ss_pred -------------------------cceEEE-eCchhhccCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECChH
Confidence 012332 2222 23689999999999877777776643 2 5678887754
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
+-
T Consensus 100 fR 101 (336)
T PRK08040 100 FA 101 (336)
T ss_pred hc
Confidence 43
No 322
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.10 E-value=0.42 Score=48.24 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.3
Q ss_pred CceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEE
Q 012349 43 PLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIW 78 (465)
Q Consensus 43 ~mkIaIIGaGam-GsalA~~La~~~G~~~~~~~V~l~ 78 (465)
-++|+|||.|.. |..+|..|.+. | ..|+++
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~-~-----atVt~~ 188 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQA-G-----ATVTIC 188 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-C-----CEEEEe
Confidence 368999999888 99999999877 5 678775
No 323
>PRK10206 putative oxidoreductase; Provisional
Probab=92.06 E-value=0.65 Score=47.90 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=31.1
Q ss_pred EEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 149 ~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.+.+|.++.+. +.|+|++|+|+....++...... . +.. |.+-|-+..
T Consensus 51 ~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~---a---Gkh-Vl~EKPla~ 99 (344)
T PRK10206 51 HFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRALE---A---GKN-VLVEKPFTP 99 (344)
T ss_pred cccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHH---c---CCc-EEEecCCcC
Confidence 34577888775 57999999999877766655443 2 223 345776654
No 324
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.02 E-value=0.22 Score=49.79 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.|+|||+|-.|.++|..|++. | ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G-----~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-G-----HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-T-----SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeec
Confidence 489999999999999999998 8 899999998
No 325
>PRK07538 hypothetical protein; Provisional
Probab=91.96 E-value=0.19 Score=52.77 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|+|||+|--|.++|..|++. | ++|+++.+.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR-G-----IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEcCCc
Confidence 6899999999999999999998 7 89999999764
No 326
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=91.93 E-value=1.7 Score=44.06 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=35.2
Q ss_pred EEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 149 KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 149 ~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.+..+.+++-+. .|+.+++||...+.+++++.... . -..++.++.|+..+
T Consensus 52 ~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~-g----vk~avI~s~Gf~~~ 103 (291)
T PRK05678 52 PVFNTVAEAVEATGANASVIYVPPPFAADAILEAIDA-G----IDLIVCITEGIPVL 103 (291)
T ss_pred eccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHHHC-C----CCEEEEECCCCCHH
Confidence 344556565444 79999999999999999987652 1 13456678888643
No 327
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=91.92 E-value=0.19 Score=51.99 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|+|||+|..|.++|..|++. | .+|+++++++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~-G-----~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARA-G-----ASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcC-C-----CeEEEEeCCCC
Confidence 5799999999999999999998 7 89999998753
No 328
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.82 E-value=1.3 Score=42.46 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=30.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++|.|||+|.+|..-+..|.+. | .+|++++.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~-g-----a~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA-G-----AQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CEEEEEcCCC
Confidence 36899999999999999999998 7 8999998764
No 329
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=91.78 E-value=0.65 Score=47.98 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=28.2
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+.+.++|++|+|+|+....++.+.+.. . +..||.++.-
T Consensus 57 ~~~~~~D~v~~a~g~~~s~~~a~~~~~---~---G~~VID~ss~ 94 (339)
T TIGR01296 57 ESFEGIDIALFSAGGSVSKEFAPKAAK---C---GAIVIDNTSA 94 (339)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECCHH
Confidence 346889999999999988888776543 3 4567776643
No 330
>PRK06185 hypothetical protein; Provisional
Probab=91.78 E-value=0.22 Score=51.88 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=31.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
....|+|||+|..|.++|..|++. | ++|+++++++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~-G-----~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARA-G-----VDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 446899999999999999999998 7 89999998753
No 331
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=91.68 E-value=1.2 Score=46.28 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~ 86 (465)
.+.||+|||+ .||...+..+.+. .. +.+ |-++++++++++
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~-~~---~~eLvaV~d~~~erA~ 42 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAA-PE---RFELAGILAQGSERSR 42 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhC-CC---CcEEEEEEcCCHHHHH
Confidence 3579999999 6899888888764 20 133 557888876544
No 332
>PRK14851 hypothetical protein; Provisional
Probab=91.64 E-value=0.73 Score=51.99 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=39.7
Q ss_pred hHHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-++|.+.=.++++..++. ..||+|+|+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~-GV----G~l~LvD~D~ 77 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRT-GI----GRFHIADFDQ 77 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHh-CC----CeEEEEcCCE
Confidence 345666555565543333 36899999999999999999999 84 5788998875
No 333
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.59 E-value=0.27 Score=50.53 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++++|+|||+|-.|.+.|..|++. | .+|+++++++
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G-----~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-G-----ADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-C-----CEEEEEecCc
Confidence 457899999999999999999999 8 7999998765
No 334
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=91.57 E-value=0.61 Score=43.06 Aligned_cols=96 Identities=24% Similarity=0.338 Sum_probs=48.9
Q ss_pred HHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhh
Q 012349 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIR 109 (465)
Q Consensus 30 ~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~ 109 (465)
++++.++........+|++.|||+=|.++...+.-. . ..-..++|.++.+
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~-~----~~I~~vvD~np~K------------------------- 104 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLD-N----DLIDYVVDDNPLK------------------------- 104 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT---T----TTS--EEES-GGG-------------------------
T ss_pred HHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCC-c----ceeEEEEeCChhh-------------------------
Confidence 344444433333447899999999999998887543 1 1234577777632
Q ss_pred cccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHHHHhhhc
Q 012349 110 RCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKE 186 (465)
Q Consensus 110 n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l~~~l~~ 186 (465)
..+|+|+. .+ +|.. +++.. ...|+||+ .+..+..++.+++..+...
T Consensus 105 ~G~~~PGt-------~i--------------------pI~~---p~~l~~~~pd~viv-law~y~~EI~~~~~~~~~~ 151 (160)
T PF08484_consen 105 QGKYLPGT-------HI--------------------PIVS---PEELKERKPDYVIV-LAWNYKDEIIEKLREYLER 151 (160)
T ss_dssp TTEE-TTT-----------------------------EEEE---GGG--SS--SEEEE-S-GGGHHHHHHHTHHHHHT
T ss_pred cCcccCCC-------CC--------------------eECC---HHHHhhCCCCEEEE-cChhhHHHHHHHHHHHHhc
Confidence 12466653 11 1222 22222 34688777 6788999999999988765
No 335
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.42 E-value=0.26 Score=51.43 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-G-----LRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEecCCc
Confidence 47899999999999999999998 8 89999998764
No 336
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=91.41 E-value=0.22 Score=51.91 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.+.|+|||+|..|.++|..|++. | ++|+|+.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G-----~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-G-----LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEccC
Confidence 46899999999999999999999 8 899999997
No 337
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=91.39 E-value=0.34 Score=37.97 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.6
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 48 IIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||+|.-|.+.|..|++. | ++|+++.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~-g-----~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-G-----YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-T-----SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-C-----CcEEEEecCcc
Confidence 899999999999999998 7 89999998763
No 338
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=91.37 E-value=0.71 Score=54.31 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=38.0
Q ss_pred HHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 27 ERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+|.+.-.+++|+..+. ..+|.|+|+|..|+-+|..|+.. |. ..++++|.+.-
T Consensus 5 ~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~la-GV----g~iti~D~d~v 59 (1008)
T TIGR01408 5 ALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLA-GV----KSVTLHDTEKC 59 (1008)
T ss_pred hhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCee
Confidence 3444444455543322 25899999999999999999999 84 58999998753
No 339
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.17 E-value=0.56 Score=47.31 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=28.5
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
.-++|+|||+|. .|.+++..|.+. | ..|+++.|
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~-g-----atVtv~~~ 191 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNA-N-----ATVTICHS 191 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhC-C-----CEEEEEeC
Confidence 346899999998 999999999987 6 68888876
No 340
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=91.15 E-value=0.25 Score=51.74 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (465)
|||+|||+|--|.++|..|++. | + +|+++.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~-g-----~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH-S-----HLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-C-----CCCEEEEecCCc
Confidence 6899999999999999999988 6 5 8999999864
No 341
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=91.13 E-value=0.27 Score=50.39 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|.+|+++|..|++. | ++|++++++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-g-----~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-G-----LRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 3599999999999999999998 7 8999999875
No 342
>PRK06392 homoserine dehydrogenase; Provisional
Probab=90.94 E-value=1 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.2
Q ss_pred ceEEEECccHHHHHHHHHHHHh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~ 65 (465)
|||+|+|.|++|+.++..|.++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999999999773
No 343
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=90.91 E-value=0.91 Score=46.34 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
+.+.++|++|+|+|.....++.+.+.. . +..||.++.
T Consensus 45 ~~~~~~D~vFlalp~~~s~~~~~~~~~---~---g~~VIDlSa 81 (310)
T TIGR01851 45 KLLNAADVAILCLPDDAAREAVSLVDN---P---NTCIIDAST 81 (310)
T ss_pred HhhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECCh
Confidence 445789999999999987777776542 2 567877663
No 344
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=90.84 E-value=0.31 Score=50.87 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=31.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+.+|+|||+|..|.+.|..|++. | ++|+++.+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 36899999999999999999998 8 89999999874
No 345
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=90.79 E-value=0.7 Score=54.32 Aligned_cols=57 Identities=23% Similarity=0.192 Sum_probs=43.4
Q ss_pred hHHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCC-CCeeEEEEecCc
Q 012349 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLR-DKVLIRIWRRPG 82 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~-~~~~V~l~~r~~ 82 (465)
..+|.|...+++|...+. ..||.|||+|+.|+-++..|+.. |.-. +...++++|.+.
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~-Gv~~~~~G~i~IvD~D~ 458 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALM-GVGTGKKGMITVTDPDL 458 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHh-CCCcCCCCeEEEECCCE
Confidence 468888888888765443 36899999999999999999998 7210 013788888775
No 346
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.49 E-value=0.64 Score=49.11 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++|.|||.|.+|.++|..|.+. | ++|+.+++++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~-G-----~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK-G-----VYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence 5899999999999999999988 7 78999998764
No 347
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.48 E-value=0.32 Score=49.96 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.|+|||+|.+|.+.|..|++. | .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-g-----~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-G-----KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence 589999999999999999998 7 7899998854
No 348
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=90.36 E-value=0.35 Score=51.50 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=31.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+++|+|||+|-.|+..|..|++. | .+|++++..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~-G-----l~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR-G-----VPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEccCc
Confidence 46899999999999999999998 8 89999986543
No 349
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.33 E-value=0.31 Score=50.46 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+.+|+|||+|..|.++|..|++. | ++|+++.+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~-G-----~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK-G-----IKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC-C-----CeEEEecCCC
Confidence 35799999999999999999998 7 8999999763
No 350
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=90.33 E-value=1.7 Score=43.71 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=50.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+.||++||+|.+-.+.-...... |. +..|.-+|++++.++.. ++ .+++. .++
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~-~~---~~~v~~iD~d~~A~~~a--~~---lv~~~--------------~~L---- 172 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQH-GP---GARVHNIDIDPEANELA--RR---LVASD--------------LGL---- 172 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--H-TT-----EEEEEESSHHHHHHH--HH---HHH-----------------HH----
T ss_pred ccceEEEEcCCCcchHHHHHHHHh-CC---CCeEEEEeCCHHHHHHH--HH---HHhhc--------------ccc----
Confidence 457999999999988854444333 31 14688899998765531 11 12211 111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEE-ecCHH---HHhcCCCEEEEecCcc----hHHHHHHHHHHhhhccCCCCEE
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQ---EAVWDADIVINGLPST----ETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl~---eal~~aDiVIlaVps~----~l~~vl~~l~~~l~~~~~~~iv 193 (465)
.. .+.+ +.|.. ..+.++|+|++|--.. ...++++.|.+++++ ++.+
T Consensus 173 ~~-----------------------~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~---ga~l 226 (276)
T PF03059_consen 173 SK-----------------------RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP---GARL 226 (276)
T ss_dssp -S-----------------------SEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-T---TSEE
T ss_pred cC-----------------------CeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCC---CcEE
Confidence 00 1222 22221 2256789999998776 899999999999987 5644
Q ss_pred E-Eeeccc
Q 012349 194 I-SLAKGV 200 (465)
Q Consensus 194 I-s~~kGi 200 (465)
+ =-.+|+
T Consensus 227 ~~Rsa~Gl 234 (276)
T PF03059_consen 227 VVRSAHGL 234 (276)
T ss_dssp EEEE--GG
T ss_pred EEecchhh
Confidence 3 234454
No 351
>PRK07045 putative monooxygenase; Reviewed
Probab=90.32 E-value=0.37 Score=49.89 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=32.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+++|+|||+|.-|.+.|..|+++ | .+|+++.+.++
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-G-----HSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-C-----CcEEEEeCCCc
Confidence 346899999999999999999999 8 89999998875
No 352
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.29 E-value=0.86 Score=46.45 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
...+-||+|||.|-.|+--|....-- | .+|++.+++.+++
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~gl-g-----A~Vtild~n~~rl 204 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGL-G-----ADVTILDLNIDRL 204 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhcc-C-----CeeEEEecCHHHH
Confidence 33356999999999999977666533 4 7999999997543
No 353
>PRK08374 homoserine dehydrogenase; Provisional
Probab=90.28 E-value=1.6 Score=45.09 Aligned_cols=42 Identities=29% Similarity=0.268 Sum_probs=29.1
Q ss_pred CHHHHh--cCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 153 NLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 153 dl~eal--~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+.++.+ .++|+||-++.+....++..+. +.. +..||+..||.
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~---G~~VVtanK~~ 125 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKE---GKSVVTSNKPP 125 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHH---Hhh---CCcEEECCHHH
Confidence 455555 4789999999877665555544 344 46788899984
No 354
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=90.28 E-value=0.33 Score=50.20 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=31.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...+|+|||+|..|+++|..|++. | ++|+++++.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~-G-----~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH-G-----FSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 346899999999999999999998 7 8999999865
No 355
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.26 E-value=0.35 Score=50.48 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.||+|||+|.-|.++|..|++. | ++|+++.+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G-----~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-G-----WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 5899999999999999999998 7 89999998764
No 356
>PRK14852 hypothetical protein; Provisional
Probab=90.15 E-value=0.85 Score=53.07 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.||+|+|+|..|+.++..|+.. |. .+++|+|.+.-
T Consensus 333 srVlVvGlGGlGs~ia~~LAra-GV----G~I~L~D~D~V 367 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLART-GI----GNFNLADFDAY 367 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCEe
Confidence 6899999999999999999999 84 57889888753
No 357
>PRK10537 voltage-gated potassium channel; Provisional
Probab=90.14 E-value=2 Score=45.42 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=28.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
+..|.|+|.|.+|..++..|.+. | .+|.+++.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~-g-----~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR-G-----QAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECc
Confidence 34699999999999999999877 6 788888765
No 358
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=90.08 E-value=0.47 Score=53.01 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=38.5
Q ss_pred hhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.+..|.+.+..+.+........|+|||+|..|+++|..|++. | .+|.|+.++
T Consensus 52 ~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~r-G-----l~V~LvE~~ 103 (627)
T PLN02464 52 SVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATR-G-----LRVGLVERE 103 (627)
T ss_pred CCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEecc
Confidence 344555555554322223346899999999999999999999 8 789999886
No 359
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=89.89 E-value=0.52 Score=48.42 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=36.4
Q ss_pred HhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 32 ~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|.+-.++ ..++|+|||+|..|...|..|++. | ++|+++++.+.
T Consensus 8 ~~~~~~~~~-~~~~VvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~ 52 (352)
T PRK12770 8 FMCKEKPPP-TGKKVAIIGAGPAGLAAAGYLACL-G-----YEVHVYDKLPE 52 (352)
T ss_pred hhcccCCCC-CCCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 556654433 357999999999999999999988 7 89999998754
No 360
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=89.88 E-value=0.45 Score=46.98 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=30.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCC----CC--CCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY----LR--DKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~----~~--~~~~V~l~~r~~ 82 (465)
+..||.|||+|..|+.++..|++. |. +- .+.+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-HHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-cccccccCCCCCCEEEEECCCE
Confidence 457999999999999999999986 41 00 012789998875
No 361
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=89.81 E-value=0.64 Score=46.45 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=36.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i 88 (465)
+++++.|-|| +.+|-.+|..||++ | ++|.|++|++++++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~-g-----~~liLvaR~~~kL~~l 46 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR-G-----YNLILVARREDKLEAL 46 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCcHHHHHHH
Confidence 4568999997 89999999999999 8 9999999999877653
No 362
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=89.72 E-value=0.41 Score=50.25 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++|.|||+|.-|++.|..|++. | ++|.++++...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G-----~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-G-----IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 5899999999999999999998 8 89999998753
No 363
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.68 E-value=1.2 Score=44.94 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=26.2
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 43 ~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
-++|+|||-|. .|..+|..|.+. | ..|+++.+
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~-~-----atVtv~hs 191 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLA-G-----CTVTVCHR 191 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-C-----CeEEEEEC
Confidence 36899999988 999999999877 5 67887743
No 364
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=89.66 E-value=1.2 Score=48.72 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=45.8
Q ss_pred CCeeEeecchhHHHhHHHhhhhcC--------CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 15 NGLIHHTNGSLEERLDELRRLMGK--------AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+|-++-.|-.-.--+.-|++.+.. .....+++.|+|+|.+|.+++..|++. | .+|++++|+.+.++
T Consensus 343 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~-G-----~~V~i~nR~~e~a~ 416 (529)
T PLN02520 343 DGKLVGYNTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEK-G-----ARVVIANRTYERAK 416 (529)
T ss_pred CCEEEEEcccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 676776776555544445432210 011236899999999999999999998 7 68999999876544
No 365
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=89.64 E-value=1.9 Score=45.13 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=28.0
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCC--CEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~--~ivIs~~kGi 200 (465)
.+.++|++|+|+|+...+++..++.. . + .+||.++.-+
T Consensus 62 ~~~~~Divf~a~~~~~s~~~~~~~~~---a---G~~~~VID~Ss~f 101 (369)
T PRK06598 62 ALKKLDIIITCQGGDYTNEVYPKLRA---A---GWQGYWIDAASTL 101 (369)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHh---C---CCCeEEEECChHH
Confidence 35789999999999988877777643 2 3 4577777544
No 366
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=89.62 E-value=0.42 Score=49.58 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|.++|..|++. | ++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQ-G-----RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEcCCC
Confidence 4899999999999999999998 8 8999999764
No 367
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=89.62 E-value=0.5 Score=50.67 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++.|+|||+|.-|++.|..|++. | .+|.++.+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~-G-----~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKG-G-----IETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 447899999999999999999998 8 89999998753
No 368
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=89.60 E-value=0.4 Score=49.12 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=30.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.|+|||+|.-|+++|..|++. | ++|+++.+++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-G-----LKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-C-----CEEEEEeCCCc
Confidence 389999999999999999998 8 89999999864
No 369
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=89.56 E-value=0.46 Score=49.46 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|.|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G-----~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-G-----IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-C-----CCEEEEEcCCc
Confidence 36899999999999999999998 8 89999999863
No 370
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.51 E-value=0.49 Score=50.89 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||||.-|.+.|..|.+. | ++|+++.++..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G-----~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-G-----HTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 47899999999999999999998 7 89999988753
No 371
>PRK08013 oxidoreductase; Provisional
Probab=89.51 E-value=0.43 Score=49.87 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|+|||+|..|.++|..|++. | ++|.++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~-G-----~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGS-G-----LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhC-C-----CEEEEEeCCCC
Confidence 4799999999999999999998 8 89999999764
No 372
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.43 E-value=0.4 Score=53.83 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|+|||+|.+|+++|..|++. | .+|++++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-G-----~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-G-----WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5899999999999999999999 8 8999999874
No 373
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=89.36 E-value=1.5 Score=44.01 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=45.5
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-+|-.|-.-.-=+.-|+.. +.. . ..++.|+|+|..+.+++..|++. |. .+|++++|+.++.+
T Consensus 96 ~~g~l~G~NTD~~Gf~~~L~~~-~~~-~-~~~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~~a~ 160 (272)
T PRK12550 96 TDGHLKAYNTDYIAIAKLLASY-QVP-P-DLVVALRGSGGMAKAVAAALRDA-GF----TDGTIVARNEKTGK 160 (272)
T ss_pred eCCEEEEEecCHHHHHHHHHhc-CCC-C-CCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence 4676666665554444455432 332 1 24899999999999999999987 62 47999999986544
No 374
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=89.31 E-value=1.3 Score=45.56 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=33.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
..|+|+|-|| |.+|+.+...|..+ | |.|.-..|+++.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r-G-----Y~V~gtVR~~~~ 42 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR-G-----YTVRGTVRDPED 42 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC-C-----CEEEEEEcCcch
Confidence 5689999997 99999999999999 8 899999999874
No 375
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=89.18 E-value=0.5 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=31.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|+|||+|.-|.++|..|++. | .+|+++.+++.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQS-G-----LRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 35799999999999999999998 7 89999998865
No 376
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.17 E-value=2.8 Score=37.85 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=25.1
Q ss_pred CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEe
Q 012349 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~ 196 (465)
|++++++.||+|+.+|....+ ++ ..++++ +++++.+
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikp---Ga~Vidv 99 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK---VP--TEWIKP---GATVINC 99 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc---cC--HHHcCC---CCEEEEc
Confidence 556778999999999987643 22 345666 6777743
No 377
>PLN02852 ferredoxin-NADP+ reductase
Probab=89.12 E-value=0.61 Score=50.64 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=32.7
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHH--hcCCCCCCeeEEEEecCch
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQD--SYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~--~~G~~~~~~~V~l~~r~~~ 83 (465)
.....+||+|||+|.-|.+.|..|++ . | ++|++|.+.+.
T Consensus 22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~~~-g-----~~Vtv~E~~p~ 62 (491)
T PLN02852 22 STSEPLHVCVVGSGPAGFYTADKLLKAHD-G-----ARVDIIERLPT 62 (491)
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHhhCC-C-----CeEEEEecCCC
Confidence 34446799999999999999999986 4 5 89999999763
No 378
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=89.05 E-value=0.49 Score=48.50 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.|+|||+|.+|.+.|..|++. | ++|++++++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-G-----~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-G-----LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 589999999999999999998 7 8999999865
No 379
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.03 E-value=2.1 Score=42.21 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=30.6
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 45 kIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
+|.|+|+ |.+|+.++..|.+. | ++|++.+|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g-----~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-S-----VPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-C-----CcEEEEeCCCcc
Confidence 5889998 99999999999988 7 899999999753
No 380
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=88.77 E-value=0.87 Score=48.96 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+||+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G-----~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-G-----VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 347899999999999999999988 7 8999998875
No 381
>PTZ00188 adrenodoxin reductase; Provisional
Probab=88.66 E-value=0.72 Score=50.04 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=33.3
Q ss_pred hhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 33 ~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|-+... ..++||+|||+|.-|.+.|..|+...| ++|++|.+.+
T Consensus 30 ~~~~~~~-~~~krVAIVGaGPAGlyaA~~Ll~~~g-----~~VtlfEk~p 73 (506)
T PTZ00188 30 KCFFTNE-AKPFKVGIIGAGPSALYCCKHLLKHER-----VKVDIFEKLP 73 (506)
T ss_pred cccCCCC-CCCCEEEEECCcHHHHHHHHHHHHhcC-----CeEEEEecCC
Confidence 3445443 345799999999999999997654325 8999999875
No 382
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=88.59 E-value=0.49 Score=49.33 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|..|.++|..|++. | ++|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGS-G-----LEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 3699999999999999999998 7 8999999875
No 383
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=88.56 E-value=0.72 Score=44.77 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=31.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
+|+|.|+|+ |.+|..++..|.++ | ++|+...|+++.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~ 53 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK-G-----FAVKAGVRDVDK 53 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEecCHHH
Confidence 579999996 99999999999988 7 899999998753
No 384
>PLN02985 squalene monooxygenase
Probab=88.54 E-value=0.64 Score=50.72 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|.|||+|..|+++|..|++. | ++|.++.++..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~-G-----~~V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKD-G-----RRVHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEECcCC
Confidence 35899999999999999999998 7 89999999753
No 385
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=88.39 E-value=0.64 Score=48.38 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=29.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|.+|+++|..|++.. ++++|++++++.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~----~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY----PGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC----CCCeEEEEeCCC
Confidence 57999999999999999999862 127999999875
No 386
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=88.38 E-value=0.52 Score=49.21 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.+|+|||+|..|.++|..|++. | ++|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~-G-----~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKES-D-----LRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CEEEEEcCC
Confidence 4799999999999999999998 8 899999985
No 387
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=88.20 E-value=6.5 Score=39.07 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=48.8
Q ss_pred ecCHHHHhc--CCCEEEEec--CcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCc
Q 012349 151 VTNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIE 226 (465)
Q Consensus 151 t~dl~eal~--~aDiVIlaV--ps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~ 226 (465)
..++.++++ ++|++|=.. |--+.+++++.+..+.+ +++|..++|-.+.. ..++.+.. +... .
T Consensus 95 ~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~a------E~tpe~a~-~~t~---G 160 (254)
T cd00762 95 SGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINE----RPVIFALSNPTSKA------ECTAEEAY-TATE---G 160 (254)
T ss_pred cCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCC----CCEEEECCCcCCcc------ccCHHHHH-hhcC---C
Confidence 368899999 888776533 45688999999987765 46788888765532 23454533 3331 1
Q ss_pred cEEEEeCCchhhhhhccC
Q 012349 227 NILYLGGPNIASEIYNKE 244 (465)
Q Consensus 227 ~i~vlsGP~~a~ev~~g~ 244 (465)
+..+-+|-.|..-...|+
T Consensus 161 ~ai~AtGspf~pv~~~g~ 178 (254)
T cd00762 161 RAIFASGSPFHPVELNGG 178 (254)
T ss_pred CEEEEECCCCCCcccCCc
Confidence 234556655544323343
No 388
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=88.14 E-value=0.69 Score=50.28 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=30.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
...|.|||+|..|.++|..+++. | .+|.|+.++
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r-G-----l~V~LvEk~ 38 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGR-G-----LSVLLCEQD 38 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecC
Confidence 36799999999999999999999 8 789999986
No 389
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=88.06 E-value=0.68 Score=50.62 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
...+|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQ-G-----VPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence 345899999999999999999998 8 89999998864
No 390
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=88.01 E-value=2.6 Score=45.12 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCC-CCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLR-DKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~-~~~~V~l~~r~~ 82 (465)
||.|||+|+.|+-++..|+.. |.-. ++..++++|.+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDN 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCC
Confidence 689999999999999999998 8311 113788998875
No 391
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.99 E-value=2.3 Score=46.43 Aligned_cols=38 Identities=18% Similarity=0.377 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..|++|+|+|.+|...+..+..- | ..|+++++++++.+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-G-----A~V~v~d~~~~rle 201 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKE 201 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 46999999999999988877766 6 67999999886544
No 392
>PRK09126 hypothetical protein; Provisional
Probab=87.98 E-value=0.62 Score=48.16 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|.|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS-G-----LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCc
Confidence 4799999999999999999998 8 89999998764
No 393
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=87.95 E-value=0.84 Score=46.75 Aligned_cols=44 Identities=23% Similarity=0.111 Sum_probs=36.7
Q ss_pred HHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 30 DELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 30 ~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|||..+.+ .+|||.|.|+ |-+|+.++..|.++ | ++|+.++|..
T Consensus 5 ~~~~~~~~~---~~~~vlVtGatGfiG~~lv~~L~~~-g-----~~V~~~d~~~ 49 (348)
T PRK15181 5 EELRTKLVL---APKRWLITGVAGFIGSGLLEELLFL-N-----QTVIGLDNFS 49 (348)
T ss_pred hhhhhcccc---cCCEEEEECCccHHHHHHHHHHHHC-C-----CEEEEEeCCC
Confidence 466766655 4589999996 99999999999998 7 8999999864
No 394
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=87.84 E-value=0.66 Score=52.19 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+.+|+|||+|--|.++|..|++. | ++|+++.|++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-G-----i~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-G-----FDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeccc
Confidence 347899999999999999999999 8 8999999975
No 395
>PTZ00367 squalene epoxidase; Provisional
Probab=87.78 E-value=0.83 Score=50.52 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+|.|||+|..|.++|..|++. | ++|.++.|+.
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~-G-----~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQ-G-----RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcccc
Confidence 46899999999999999999998 7 8999999975
No 396
>PRK06126 hypothetical protein; Provisional
Probab=87.76 E-value=0.71 Score=50.33 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|+|||+|..|.++|..|++. | ++|+++.+.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~-G-----~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRR-G-----VDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 35899999999999999999999 8 89999998764
No 397
>PRK12829 short chain dehydrogenase; Provisional
Probab=87.59 E-value=1.1 Score=43.13 Aligned_cols=45 Identities=16% Similarity=0.325 Sum_probs=35.8
Q ss_pred hhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 33 RRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 33 ~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
|.+++.. +.++|.|.|+ |.+|..++..|+++ | ++|.+.+|+++..
T Consensus 3 ~~~~~~~--~~~~vlItGa~g~iG~~~a~~L~~~-g-----~~V~~~~r~~~~~ 48 (264)
T PRK12829 3 IDLLKPL--DGLRVLVTGGASGIGRAIAEAFAEA-G-----ARVHVCDVSEAAL 48 (264)
T ss_pred hhHhhcc--CCCEEEEeCCCCcHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 3455443 3378999997 99999999999998 7 8999999987543
No 398
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.54 E-value=0.82 Score=49.13 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=31.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~-G-----~~V~vie~~~~ 177 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARA-G-----HKVTVFERADR 177 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 47999999999999999999998 7 89999998653
No 399
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=87.53 E-value=0.75 Score=50.44 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=27.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+||+|||||.-|.+.+..|.+. | .+|+++.++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g-----~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-G-----LEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T------EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHC-C-----CCCeEEecCCC
Confidence 6899999999999999999988 7 89999998765
No 400
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=87.51 E-value=0.77 Score=49.03 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g-----~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-G-----YDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEccCCC
Confidence 457999999999999999999998 7 89999998753
No 401
>PLN02686 cinnamoyl-CoA reductase
Probab=87.49 E-value=1.3 Score=45.83 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=43.2
Q ss_pred chhHHHhHHHhhhhcCC-------------------------CCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEE
Q 012349 23 GSLEERLDELRRLMGKA-------------------------EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR 76 (465)
Q Consensus 23 ~~~~~~~~~~~~~~~~~-------------------------~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~ 76 (465)
-++|..++|||+...-. ....++|.|.|+ |.+|+.++..|+++ | ++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIG~~lv~~L~~~-G-----~~V~ 81 (367)
T PLN02686 8 ESMEAEVEEFRAALLLSRGGDDDGWRGSRGGGKEANAGDAGADAEARLVCVTGGVSFLGLAIVDRLLRH-G-----YSVR 81 (367)
T ss_pred HhHHHHHHHHHHHHHhcccCCccccccccCccccccccccccCCCCCEEEEECCchHHHHHHHHHHHHC-C-----CEEE
Confidence 47788888998832111 233578999997 99999999999998 7 8999
Q ss_pred EEecCchh
Q 012349 77 IWRRPGRS 84 (465)
Q Consensus 77 l~~r~~~~ 84 (465)
++.|+.+.
T Consensus 82 ~~~r~~~~ 89 (367)
T PLN02686 82 IAVDTQED 89 (367)
T ss_pred EEeCCHHH
Confidence 88887643
No 402
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=87.41 E-value=2.5 Score=42.59 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=33.7
Q ss_pred hhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 33 RRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 33 ~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
++-+.....+..||+|+|| |.+|..++..|..+ -.+ .+..|||..
T Consensus 18 ~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~n-p~V---s~LaLYDi~ 63 (345)
T KOG1494|consen 18 KRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIA 63 (345)
T ss_pred cccccccccCcceEEEEecCCccCccHHHHHhcC-ccc---ceeeeeecc
Confidence 4456666777789999997 88999999988766 211 357788765
No 403
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.31 E-value=0.86 Score=51.19 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+||+|||+|..|.+.|..|++. | ++|+++++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G-----~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-G-----HDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 7 89999998753
No 404
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=87.30 E-value=5.8 Score=40.09 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=34.3
Q ss_pred EEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 149 KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 149 ~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.+..+.+++-+. .|+.+++||...+.+++++.... . -..+|.++.|+..
T Consensus 50 ~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~-G----vk~avIis~Gf~e 100 (286)
T TIGR01019 50 PVFDSVKEAVEETGANASVIFVPAPFAADAIFEAIDA-G----IELIVCITEGIPV 100 (286)
T ss_pred eccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEECCCCCH
Confidence 344555554443 69999999999999999987652 1 1345668888854
No 405
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.30 E-value=0.81 Score=49.61 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|+|||+|..|.++|..|++. | .+|.|+.+..
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r-G-----~~V~LlEk~d 39 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGR-G-----LKVLLCEKDD 39 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 35799999999999999999999 8 7899999873
No 406
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.25 E-value=1.4 Score=49.43 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+||+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G-----~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-G-----VAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 347999999999999999999998 7 8999999865
No 407
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.18 E-value=1.4 Score=49.37 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+||+|||+|..|.+.|..|++. | ++|++|.+.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G-----~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-G-----VQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-C-----CcEEEEeCCCC
Confidence 57999999999999999999988 7 89999998763
No 408
>PRK00536 speE spermidine synthase; Provisional
Probab=87.13 E-value=4.2 Score=40.61 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=58.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+++||.|||+|--|+ +.-+.+. . .+|++++.+++.++..+ +|+|.+.+-+
T Consensus 72 ~pk~VLIiGGGDGg~--~REvLkh-~-----~~v~mVeID~~Vv~~~k----------------------~~lP~~~~~~ 121 (262)
T PRK00536 72 ELKEVLIVDGFDLEL--AHQLFKY-D-----THVDFVQADEKILDSFI----------------------SFFPHFHEVK 121 (262)
T ss_pred CCCeEEEEcCCchHH--HHHHHCc-C-----CeeEEEECCHHHHHHHH----------------------HHCHHHHHhh
Confidence 468999999998554 3444444 2 48999999998765311 2455432111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEe-cCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVING-LPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIla-Vps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+ +++++.....+.- +..|+||+= +++ ++..+.+++.|++ +- +++++.|
T Consensus 122 ~D----------------------pRv~l~~~~~~~~~~~fDVIIvDs~~~---~~fy~~~~~~L~~---~G-i~v~Qs~ 172 (262)
T PRK00536 122 NN----------------------KNFTHAKQLLDLDIKKYDLIICLQEPD---IHKIDGLKRMLKE---DG-VFISVAK 172 (262)
T ss_pred cC----------------------CCEEEeehhhhccCCcCCEEEEcCCCC---hHHHHHHHHhcCC---Cc-EEEECCC
Confidence 11 1344433333322 568999986 444 4555667777776 44 4567766
Q ss_pred c
Q 012349 200 V 200 (465)
Q Consensus 200 i 200 (465)
-
T Consensus 173 s 173 (262)
T PRK00536 173 H 173 (262)
T ss_pred C
Confidence 3
No 409
>PRK05884 short chain dehydrogenase; Provisional
Probab=87.07 E-value=0.97 Score=43.14 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=31.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||+.|.|+ |.+|.+++..|++. | ++|.+.+|+++.++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~-g-----~~v~~~~r~~~~~~ 38 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND-G-----HKVTLVGARRDDLE 38 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 58999987 89999999999998 7 89999999876443
No 410
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=87.03 E-value=3.9 Score=39.42 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=30.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..++|+|||+|..|..=+..|.+. | .+|++|+...
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~-g-----a~v~Vvs~~~ 45 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKA-G-----ADVTVVSPEF 45 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcCCc
Confidence 447999999999999999999988 7 7899998765
No 411
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=87.03 E-value=0.88 Score=49.97 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|..|+++|..|++. | .+|.|+.++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-G-----~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-G-----LRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-C-----CeEEEEECCC
Confidence 5799999999999999999998 8 8999999854
No 412
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=87.01 E-value=0.88 Score=53.29 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=32.9
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
....+||+|||+|.-|.+.|..|++. | |+|+++++..
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~Lar~-G-----~~VtVfE~~~ 339 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLLAVE-G-----FPVTVFEAFH 339 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeeCC
Confidence 34568999999999999999999998 8 9999998864
No 413
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=86.96 E-value=2.7 Score=44.90 Aligned_cols=50 Identities=20% Similarity=0.138 Sum_probs=36.4
Q ss_pred HhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 28 RLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 28 ~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|.|.--|+.|...+. ..+|+|||+|+.|+-++..|+.. |. ..++++|.+.
T Consensus 2 rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~-GI----g~~tIvD~~~ 54 (425)
T cd01493 2 KYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLP-GI----GSFTIVDGSK 54 (425)
T ss_pred cchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHc-CC----CeEEEECCCc
Confidence 344444455433222 36899999999999999999998 83 5799998764
No 414
>PLN03075 nicotianamine synthase; Provisional
Probab=86.93 E-value=6.9 Score=39.79 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=29.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+.+|+-||+|..|..-...++.. . ++..++-++.+++..+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-~---p~~~~~giD~d~~ai~~ 164 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-L---PTTSFHNFDIDPSANDV 164 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-C---CCCEEEEEeCCHHHHHH
Confidence 668999999999877654444433 1 11468899999876553
No 415
>PRK08017 oxidoreductase; Provisional
Probab=86.91 E-value=1 Score=43.26 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=31.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|.|+ |.+|.+++..|++. | ++|.+++|+.+..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~-g-----~~v~~~~r~~~~~ 39 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR-G-----YRVLAACRKPDDV 39 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHh
Confidence 47999998 99999999999988 7 8899999987543
No 416
>PRK08244 hypothetical protein; Provisional
Probab=86.91 E-value=0.8 Score=49.30 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA-G-----VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 4799999999999999999998 8 89999998764
No 417
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=86.91 E-value=0.97 Score=47.15 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=28.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.|+|||+|.+|+++|..|++..|. .+|.+++++.
T Consensus 32 dvvIIGgGi~G~s~A~~L~~~~g~----~~V~vle~~~ 65 (407)
T TIGR01373 32 DVIIVGGGGHGLATAYYLAKEHGI----TNVAVLEKGW 65 (407)
T ss_pred CEEEECCcHHHHHHHHHHHHhcCC----CeEEEEEccc
Confidence 699999999999999999984151 3799999863
No 418
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=86.83 E-value=0.86 Score=44.49 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=29.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.|+|||+|..|.++|..|++. | .+|.++.++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~-g-----~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK-G-----LRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 589999999999999999988 7 89999998864
No 419
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=86.76 E-value=0.75 Score=49.13 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+|+|||+|-.|+..|..|++. | .+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G-----~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-G-----VPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecccc
Confidence 699999999999999999999 8 89999987654
No 420
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=86.73 E-value=2.6 Score=42.48 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=35.6
Q ss_pred cCHHHHhc--CCCEEEEec--CcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 152 TNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 152 ~dl~eal~--~aDiVIlaV--ps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.++.++++ ++|++|=+. |--+.+++++.+..+.+ +.+|..++|-..
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~ 144 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE----RPIIFALSNPTS 144 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC----CCEEEECCCcCC
Confidence 57889998 889877655 45688999999987765 478888887654
No 421
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=86.47 E-value=0.97 Score=49.32 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=32.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
...+|+|||+|..|.++|..|++. | .+|.++.+.++
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~-G-----~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY-G-----VRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 346899999999999999999998 7 89999999864
No 422
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=86.41 E-value=3.7 Score=42.49 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=29.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|+|+|+|..|.. |..+|++.| .+|+.++|++++.+
T Consensus 168 ~~V~I~G~GGlGh~-avQ~Aka~g-----a~Via~~~~~~K~e 204 (339)
T COG1064 168 KWVAVVGAGGLGHM-AVQYAKAMG-----AEVIAITRSEEKLE 204 (339)
T ss_pred CEEEEECCcHHHHH-HHHHHHHcC-----CeEEEEeCChHHHH
Confidence 68999999988876 555555436 79999999987654
No 423
>PRK11445 putative oxidoreductase; Provisional
Probab=86.31 E-value=0.85 Score=46.87 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=29.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+.|+|||+|.-|+++|..|++. ++|.++++.++
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCc
Confidence 36899999999999999999876 68999998764
No 424
>PRK07023 short chain dehydrogenase; Provisional
Probab=86.26 E-value=1 Score=43.18 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=31.1
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||+|.|.|+ |.+|.+++..|++. | ++|.+.+|+.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~-G-----~~v~~~~r~~~ 36 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP-G-----IAVLGVARSRH 36 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC-C-----CEEEEEecCcc
Confidence 478999997 99999999999998 7 88999998764
No 425
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=86.25 E-value=0.94 Score=47.41 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=31.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++.|+|||||.-|++.|..|+++ | .+|.++.+.++
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-G-----~~VlvlEk~~~ 37 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-G-----LDVLVLEKGSE 37 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-C-----CeEEEEecCCC
Confidence 46799999999999999999999 8 79999999764
No 426
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.25 E-value=1 Score=47.78 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||||+|||+|.-|...|..|.+. + ++++|+++++++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~-~---~~~~I~li~~~~ 36 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRL-D---KESDIIIFEKDR 36 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhh-C---CCCCEEEEECCC
No 427
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=86.16 E-value=12 Score=34.26 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.6
Q ss_pred ceEEEEC-c-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVG-A-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIG-a-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||++|| . +++..+++..+++- | .+|++.+...
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~-g-----~~~~~~~P~~ 37 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKF-G-----MEVVLIAPEG 37 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHT-T-----SEEEEESSGG
T ss_pred CEEEEECCCCChHHHHHHHHHHHc-C-----CEEEEECCCc
Confidence 6899999 4 79999999999887 7 6788887655
No 428
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.04 E-value=0.82 Score=49.06 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||||+-|.+-|..|.+. | ++|+++.|...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g-----~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-G-----HEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-C-----CCceEEEecCC
Confidence 47899999999999999999998 7 88988888764
No 429
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=86.02 E-value=1.2 Score=42.99 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=31.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
|+|.|+|+ |..|.+++..|++. | ++|.+.+|+++.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~ 37 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-G-----HKVIATGRRQERL 37 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECCHHHH
Confidence 68999996 99999999999988 7 8999999987543
No 430
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=85.80 E-value=1 Score=47.19 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=29.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|+|||+|..|.++|..|++. | .+|.++.++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G-----~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-N-----KRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 5799999999999999999987 7 7899998754
No 431
>PLN02214 cinnamoyl-CoA reductase
Probab=85.78 E-value=1.3 Score=45.39 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=34.6
Q ss_pred cCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 37 GKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 37 ~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+...++|+|.|.|+ |.+|+.++..|.++ | ++|+..+|+.+
T Consensus 4 ~~~~~~~~~vlVTGatGfIG~~l~~~L~~~-G-----~~V~~~~r~~~ 45 (342)
T PLN02214 4 DVASPAGKTVCVTGAGGYIASWIVKILLER-G-----YTVKGTVRNPD 45 (342)
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCCch
Confidence 344455678999998 99999999999998 7 89999998764
No 432
>PRK12831 putative oxidoreductase; Provisional
Probab=85.78 E-value=1.2 Score=47.76 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..++|+|||+|.-|.+.|..|++. | ++|+++++.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G-----~~V~v~e~~~ 173 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-G-----YDVTIFEALH 173 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 458999999999999999999998 7 8999998754
No 433
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=85.77 E-value=1.5 Score=42.29 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=32.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~-G-----~~V~~~~r~~~~~ 47 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA-G-----AEVILNGRDPAKL 47 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc-C-----CEEEEEeCCHHHH
Confidence 368999996 99999999999998 7 8999999987543
No 434
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=85.76 E-value=1 Score=44.24 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=29.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|+|||+|.-|.+.|..|++. | ++|++++++.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA-N-----LKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence 699999999999999999988 7 8999999754
No 435
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=85.72 E-value=0.93 Score=48.91 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||+|+|+|--|.+-|..|+++ | ++|++|.++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-g-----~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-G-----YDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-C-----CceEEEeccC
Confidence 7999999999999999999999 8 9999998765
No 436
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.71 E-value=3.6 Score=40.07 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=28.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.++|.|||+|.+|..=+..|.+. | .+|++++..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-g-----A~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-G-----CYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCC
Confidence 46899999999999988888887 7 789999865
No 437
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=85.63 E-value=1.1 Score=48.62 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=29.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|+|||+|.||+++|..|++. + ++.+|.++.+..
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~-~---~g~~V~VlEk~~ 40 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKEL-E---PEWSITMFERLD 40 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHh-C---CCCeEEEEEcCC
Confidence 35799999999999999999985 2 126899999875
No 438
>PRK06184 hypothetical protein; Provisional
Probab=85.63 E-value=1 Score=48.59 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~-G-----i~v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARR-G-----VSFRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 5799999999999999999999 8 89999999764
No 439
>PRK07774 short chain dehydrogenase; Provisional
Probab=85.59 E-value=1.8 Score=41.42 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g-----~~vi~~~r~~~~~ 43 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-G-----ASVVVADINAEGA 43 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 68999998 99999999999998 7 8999999986543
No 440
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=85.49 E-value=1.2 Score=45.40 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=30.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||||.|.|+ |.+|+.++..|.++.| ++|+.++|+.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-----~~V~~~~r~~~ 37 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-----WEVYGMDMQTD 37 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-----CeEEEEeCcHH
Confidence 479999997 9999999999987513 78999988654
No 441
>PRK07454 short chain dehydrogenase; Provisional
Probab=85.38 E-value=1.6 Score=41.70 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=32.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.++++.|.|+ |.+|..++..|++. | ++|.+.+|+++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~ 42 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA-G-----WDLALVARSQDA 42 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHH
Confidence 4568999996 99999999999998 7 899999998754
No 442
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=85.32 E-value=1.4 Score=42.69 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.0
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|+|.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~-G-----~~V~~~~r~~~~~~ 38 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK-G-----ARVVISSRNEENLE 38 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 68999997 78999999999999 7 88999999876543
No 443
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=85.18 E-value=4.4 Score=42.38 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=28.5
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCC--CEEEEeecccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGVE 201 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~--~ivIs~~kGi~ 201 (465)
.+.+.|++|+|.++...+++...++.. + .++|+.+.-+-
T Consensus 61 ~~~~vDivffa~g~~~s~~~~p~~~~a------G~~~~VIDnSSa~R 101 (366)
T TIGR01745 61 ALKALDIIITCQGGDYTNEIYPKLRES------GWQGYWIDAASSLR 101 (366)
T ss_pred cccCCCEEEEcCCHHHHHHHHHHHHhC------CCCeEEEECChhhh
Confidence 467899999999998777777766542 4 56777775553
No 444
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=85.02 E-value=2.1 Score=46.64 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=42.2
Q ss_pred eeEeecchhHHHhHHHhhhhcC------CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012349 17 LIHHTNGSLEERLDELRRLMGK------AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (465)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~ 79 (465)
.+++-.-+.++-++.++...+. .+....+|+|||+|..|.+.|..+++. | ++|++++
T Consensus 180 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA~~la~~-G-----~~v~li~ 242 (515)
T TIGR03140 180 EFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAAIYAARK-G-----LRTAMVA 242 (515)
T ss_pred EEEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEe
Confidence 3455556667777777655332 223457899999999999999999998 7 8898885
No 445
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=85.00 E-value=1 Score=46.38 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=29.4
Q ss_pred CceEEEECccHHHHHHHHHHHHh--cCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS--YGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~--~G~~~~~~~V~l~~r~ 81 (465)
+++|+|||+|..|.++|..|++. .| ++|+++++.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G-----~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGG-----LPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCC-----CEEEEEeCC
Confidence 46899999999999999999874 14 899999995
No 446
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=84.97 E-value=1.2 Score=47.86 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|++|.|||+|..|...|..+++. | ++|.++.++.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~-g-----~~v~~~e~~~ 34 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQL-G-----ADVTVIERDG 34 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEccC
Confidence 46899999999999999999998 7 8999998753
No 447
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=84.91 E-value=2.1 Score=44.30 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=35.5
Q ss_pred HHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 31 ELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 31 ~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++...++.. ..+||.|||+|-||...+..|.++ |. .+|++..|...
T Consensus 164 ~~~~~~~~l--~~k~vLvIGaGem~~l~a~~L~~~-g~----~~i~v~nRt~~ 209 (338)
T PRK00676 164 QELRRRQKS--KKASLLFIGYSEINRKVAYYLQRQ-GY----SRITFCSRQQL 209 (338)
T ss_pred HHHHHhCCc--cCCEEEEEcccHHHHHHHHHHHHc-CC----CEEEEEcCCcc
Confidence 333445544 447999999999999999999998 72 47999988863
No 448
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=84.85 E-value=1.3 Score=47.33 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++|+|||+|.-|.+.|..|++. | ++|+++++.+
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~-G-----~~V~vie~~~ 166 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKA-G-----HSVTVFEALH 166 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 47899999999999999999998 7 8999999864
No 449
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=84.83 E-value=2.7 Score=41.72 Aligned_cols=113 Identities=26% Similarity=0.275 Sum_probs=65.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhc---CCCC--CCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSY---GYLR--DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~---G~~~--~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
..||.|+|+|+-|.++|..|.... |.-. ...+++++|+..-..+. + +.+ +... ..|...
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~-r-~~l----~~~~---------~~~a~~- 88 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD-R-EDL----NPHK---------KPFARK- 88 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT-T-SSH----SHHH---------HHHHBS-
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc-C-ccC----Chhh---------hhhhcc-
Confidence 369999999999999999987641 4100 00358888887532211 0 011 0000 001110
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCC--CEEEEe--cCcchHHHHHHHHHHhhhccCCCCEE
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA--DIVING--LPSTETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~a--DiVIla--Vps~~l~~vl~~l~~~l~~~~~~~iv 193 (465)
. .......++.|+++.+ |++|=+ +|--+.+++++.+.++.+ +.+|
T Consensus 89 --------------------~-------~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e----rPII 137 (255)
T PF03949_consen 89 --------------------T-------NPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE----RPII 137 (255)
T ss_dssp --------------------S-------STTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS----SEEE
T ss_pred --------------------C-------cccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC----CCEE
Confidence 0 0111236889999988 987765 466789999999998765 3677
Q ss_pred EEeeccccc
Q 012349 194 ISLAKGVEA 202 (465)
Q Consensus 194 Is~~kGi~~ 202 (465)
..++|-.+.
T Consensus 138 F~LSNPt~~ 146 (255)
T PF03949_consen 138 FPLSNPTPK 146 (255)
T ss_dssp EE-SSSCGG
T ss_pred EECCCCCCc
Confidence 788887653
No 450
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=84.71 E-value=1 Score=47.85 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.3
Q ss_pred eEEEECccHHHHHHHHHHHH----hcCCCCCCeeEEEEecC
Q 012349 45 RIVGVGAGAWGSVFTAMLQD----SYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~----~~G~~~~~~~V~l~~r~ 81 (465)
.|+|||+|..|.++|..|++ . | ++|.+++++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~-G-----~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTK-D-----LKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccC-C-----CeEEEEeCC
Confidence 58999999999999999998 6 6 899999984
No 451
>PRK05993 short chain dehydrogenase; Provisional
Probab=84.57 E-value=1.7 Score=42.75 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=32.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++|.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 5 k~vlItGasggiG~~la~~l~~~-G-----~~Vi~~~r~~~~~~ 42 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSD-G-----WRVFATCRKEEDVA 42 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 57999998 99999999999998 7 89999999876443
No 452
>PRK08267 short chain dehydrogenase; Provisional
Probab=84.54 E-value=1.7 Score=42.04 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=31.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+++.|.|+ |.+|.+++..|++. | .+|.+++|+.+..+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 39 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE-G-----WRVGAYDINEAGLA 39 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-C-----CeEEEEeCCHHHHH
Confidence 57999996 88999999999998 7 89999999876443
No 453
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.48 E-value=24 Score=38.02 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.9
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC--eeEEEEecC
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRRP 81 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~--~~V~l~~r~ 81 (465)
.+.+|+|-|| |.+|.++...+|.. ..|-++ ..+.|++..
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G-~~fG~~~~v~L~LlDi~ 163 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASG-EVFGMEEEISIHLLDSP 163 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCC-cccCCCCeEEEEEEcCC
Confidence 3589999997 99999999999864 233222 346677773
No 454
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.45 E-value=3.5 Score=41.65 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.6
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012349 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWR 79 (465)
Q Consensus 43 ~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~ 79 (465)
-++|+|||-|. +|-.+|..|.+. | ..|+++.
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~-~-----atVtv~h 195 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNR-N-----ATVSVCH 195 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-C-----CEEEEEe
Confidence 36899999988 999999999877 5 6787764
No 455
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=84.42 E-value=1.3 Score=47.00 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=31.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|.|||+|.-|++.|..|+++ | ++|.++.+.+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G-----~~V~llEr~~ 38 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-G-----AQVLVIERGN 38 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEcCC
Confidence 35799999999999999999999 8 8999999875
No 456
>PRK07102 short chain dehydrogenase; Provisional
Probab=84.42 E-value=1.5 Score=41.88 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=32.5
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||+|.|.|+ |.+|.+++..|+++ | ++|++.+|+++..+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~ 39 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA-G-----ARLYLAARDVERLE 39 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-C-----CEEEEEeCCHHHHH
Confidence 468999995 99999999999998 7 89999999876443
No 457
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=84.29 E-value=3.8 Score=37.83 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaG-amGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
..++|+|||-+ .+|..++..|.++ | ..|++...
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~-~-----atVt~~h~ 68 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNK-G-----ATVTICHS 68 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHT-T------EEEEE-T
T ss_pred CCCEEEEECCcCCCChHHHHHHHhC-C-----CeEEeccC
Confidence 45799999987 5999999999988 6 77887643
No 458
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.19 E-value=2.1 Score=40.59 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=31.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|+|+ |.+|..++..|++. | ++|.+.+|+++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g-----~~V~~~~r~~~~~ 43 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-G-----YKVAITARDQKEL 43 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-C-----CEEEEeeCCHHHH
Confidence 67999996 99999999999988 7 7899999987543
No 459
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=84.16 E-value=1.2 Score=49.90 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=32.0
Q ss_pred CceEEEECccHHHHHHHHHHHH-hcCCCCCCeeEEEEecCchh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~-~~G~~~~~~~V~l~~r~~~~ 84 (465)
.++|+|||||..|.++|..|++ . | .+|.++++.+..
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~-G-----i~v~IiE~~~~~ 68 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFP-D-----ITTRIVERKPGR 68 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCC-C-----CcEEEEEcCCCC
Confidence 5789999999999999999998 6 6 899999987653
No 460
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=84.07 E-value=1.3 Score=46.08 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=29.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.|+|||+|.-|++.|..|++. | .+|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-G-----~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-G-----IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECC
Confidence 589999999999999999998 7 899999987
No 461
>PRK12939 short chain dehydrogenase; Provisional
Probab=83.90 E-value=2.3 Score=40.45 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=32.4
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|.|.|+ |.+|..++..|++. | ++|.+.+|+++..+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 45 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA-G-----ATVAFNDGLAAEAR 45 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 378999997 99999999999998 7 88999998876443
No 462
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=83.78 E-value=1.9 Score=40.69 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=31.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|.|+ |.+|..++..|++. | ++|.+++|+++..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~-g-----~~v~~~~r~~~~~ 42 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD-G-----AKVVIYDSNEEAA 42 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCChhHH
Confidence 68999997 99999999999988 7 8899999987543
No 463
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=83.68 E-value=2.4 Score=40.79 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=32.8
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 45 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA-G-----AAVAIADLNQDGAN 45 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-C-----CeEEEEeCChHHHH
Confidence 467999998 99999999999998 7 89999999875443
No 464
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=83.60 E-value=11 Score=39.23 Aligned_cols=42 Identities=29% Similarity=0.429 Sum_probs=30.6
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhh
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSV 85 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~ 85 (465)
.++++-||++||+|-||+.+....+.-.| .+ |-+-+|+-+.+
T Consensus 13 a~G~PiRVGlIGAG~mG~~ivtQi~~m~G-----m~vvaisd~~~~~a 55 (438)
T COG4091 13 AEGKPIRVGLIGAGEMGTGIVTQIASMPG-----MEVVAISDRNLDAA 55 (438)
T ss_pred ccCCceEEEEecccccchHHHHHHhhcCC-----ceEEEEecccchHH
Confidence 34567899999999999999998886435 44 44556665433
No 465
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=83.44 E-value=2.4 Score=41.92 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|.|||+|.-|.+.|..+++. | .+|.++.++..
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~-G-----~~V~liEk~~~ 59 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKA-G-----LKVAVFERKLS 59 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 4799999999999999999988 7 89999988753
No 466
>PRK07109 short chain dehydrogenase; Provisional
Probab=83.37 E-value=2.4 Score=43.38 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=33.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..++|.|.|+ |.+|.+++..|++. | ++|.+++|+++.++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~-G-----~~Vvl~~R~~~~l~ 46 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARR-G-----AKVVLLARGEEGLE 46 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 3467999997 89999999999998 7 89999999876544
No 467
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=83.34 E-value=1.5 Score=46.01 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=34.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATA 90 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~ 90 (465)
-|-|||||..|+++|..|++. | ..|.++.|+-..-|+|-.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kd-G-----RrVhVIERDl~EPdRivG 86 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKD-G-----RRVHVIERDLSEPDRIVG 86 (509)
T ss_pred cEEEECCcchHHHHHHHHhhC-C-----cEEEEEecccccchHHHH
Confidence 488999999999999999999 7 899999998766666543
No 468
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=83.30 E-value=1.6 Score=40.49 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=25.1
Q ss_pred EEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchh
Q 012349 47 VGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRS 84 (465)
Q Consensus 47 aIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~ 84 (465)
+|||||.-|.+.|..|.+. | .+ |.+++++...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g-----~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-G-----IDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T--------EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHhC-C-----CCcEEEEeCCCCC
Confidence 5999999999999999998 7 66 9999998653
No 469
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=83.27 E-value=1.6 Score=49.94 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||+|||+|.-|.+.|..|++. | ++++|+++.+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~-~---~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLL-D---PAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHh-C---CCCeEEEEecCCC
Confidence 7999999999999999999886 2 1289999998864
No 470
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=83.25 E-value=1.2 Score=46.12 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=29.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|||+|||+|--|..-|..|++. |+|+++.-+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~ 40 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADR 40 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-------cceEEEeccc
Confidence 468999999999999999999877 8999996553
No 471
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=83.25 E-value=1.6 Score=51.12 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
..+||+|||+|.-|.+.|..|++. | |+|++++..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-G-----h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-G-----HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-C-----CeEEEEccc
Confidence 457999999999999999999998 8 999999874
No 472
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=83.06 E-value=8.3 Score=42.90 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=28.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|+|+|.+|+.+...|+.. |. .++..++.+.
T Consensus 130 akVlVlG~Gg~~s~lv~sL~~s-G~----~~I~~vd~D~ 163 (637)
T TIGR03693 130 AKILAAGSGDFLTKLVRSLIDS-GF----PRFHAIVTDA 163 (637)
T ss_pred ccEEEEecCchHHHHHHHHHhc-CC----CcEEEEeccc
Confidence 6899999999999999999999 83 5676665554
No 473
>PRK08177 short chain dehydrogenase; Provisional
Probab=83.05 E-value=2.2 Score=40.43 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=31.3
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
+++.|.| +|.+|.+++..|++. | .+|.+++|+++..
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~ 38 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER-G-----WQVTATVRGPQQD 38 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC-C-----CEEEEEeCCCcch
Confidence 5788999 599999999999998 7 8999999987643
No 474
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=83.04 E-value=1.7 Score=45.88 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+.+|+|+|+|-.|.+.|..|.+. | .+|.++...++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~-G-----~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK-G-----IDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-C-----CeEEEEeeccc
Confidence 46899999999999999999999 8 89999988553
No 475
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=82.97 E-value=1.4 Score=45.29 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.|+|||+|..|+++|..|++. | +++|+++.+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G----~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-G----KIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-C----CceEEEEeCCCc
Confidence 389999999999999999988 5 168999998754
No 476
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.96 E-value=2.6 Score=40.51 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=33.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..++|.|.|+ |.+|.+++..|++. | +.|.+++|+++..+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 49 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGA-G-----AHVLVNGRNAATLE 49 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHH
Confidence 3468999997 88999999999998 7 89999999876443
No 477
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.90 E-value=2 Score=40.90 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=31.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|+|+ |.+|.+++..|++. | ++|++.+|+++..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~-G-----~~V~~~~r~~~~~ 42 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE-G-----ARVVVTDRNEEAA 42 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 68999997 89999999999998 7 8899999997543
No 478
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=82.82 E-value=1.8 Score=43.66 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=29.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||.|+|+ |.+|..++..|+++ | ++|++++|..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~~~~ 34 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-G-----HDVVILDNLC 34 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 68999995 99999999999998 7 8999987653
No 479
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=82.78 E-value=5.1 Score=44.22 Aligned_cols=46 Identities=30% Similarity=0.354 Sum_probs=34.2
Q ss_pred cCHHHHhcC--CCEEEEec--CcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 152 TNLQEAVWD--ADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 152 ~dl~eal~~--aDiVIlaV--ps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.++.++++. +|++|=+. |--+.+++++.++.+.+ +.+|..++|-..
T Consensus 391 ~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~----rPIIFaLSNPt~ 440 (581)
T PLN03129 391 ASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNE----RPIIFALSNPTS 440 (581)
T ss_pred CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC----CCEEEECCCCCC
Confidence 678899888 78776544 45688899999887755 467778887654
No 480
>PRK06834 hypothetical protein; Provisional
Probab=82.77 E-value=1.5 Score=47.39 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|.|||+|..|.++|..|++. | .+|+++++.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~-G-----~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALA-G-----VDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 4799999999999999999999 8 89999998764
No 481
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=82.77 E-value=5.9 Score=38.87 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.||.|+|+|..|+..+..|+.. |. -++++++.+.-.+.
T Consensus 31 s~vlvvG~GglG~~~~~~la~a-Gv----g~l~i~D~d~v~~s 68 (254)
T COG0476 31 SRVLVVGAGGLGSPAAKYLALA-GV----GKLTIVDFDTVELS 68 (254)
T ss_pred CCEEEEecChhHHHHHHHHHHc-CC----CeEEEEcCCccccc
Confidence 5899999999999999999998 73 46888888764443
No 482
>PRK08309 short chain dehydrogenase; Provisional
Probab=82.68 E-value=2.1 Score=39.99 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|++.|+|+..+|.+++..|++. | ++|.+.+|+++..+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~-G-----~~V~v~~R~~~~~~ 37 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEK-G-----FHVSVIARREVKLE 37 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-c-----CEEEEEECCHHHHH
Confidence 6899999878889999999998 7 89999999875433
No 483
>PRK07233 hypothetical protein; Provisional
Probab=82.68 E-value=1.5 Score=45.65 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=29.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||+|||+|--|.+-|..|++. | ++|+++.++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G-----~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-G-----HEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEeCC
Confidence 689999999999999999998 7 8999998765
No 484
>PRK07190 hypothetical protein; Provisional
Probab=82.65 E-value=1.6 Score=47.31 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|.|||+|..|.++|..|++. | .+|.++++.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~-G-----i~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLC-G-----LNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeCCCc
Confidence 5799999999999999999998 8 89999998864
No 485
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=82.57 E-value=1.6 Score=45.21 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=30.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|.|||+|.-|.++|..|++. | ++.+|+++++.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~-g---~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA-A---PHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC-C---CCCEEEEEeCCCc
Confidence 4699999999999999999987 4 1268999999764
No 486
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=82.54 E-value=2.7 Score=38.64 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+.||+|+|+|..|..-+..+..- | ++|+.++.+.+..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-G-----a~v~~~d~~~~~~~ 57 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-G-----AEVVVPDERPERLR 57 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T------EEEEEESSHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-C-----CEEEeccCCHHHHH
Confidence 468999999999999987777766 7 89999998876444
No 487
>PRK06057 short chain dehydrogenase; Provisional
Probab=82.53 E-value=2.5 Score=40.81 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=31.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|+|+ |.+|.+++..|++. | ++|.+.+|++...
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~-G-----~~v~~~~r~~~~~ 44 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAE-G-----ATVVVGDIDPEAG 44 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHc-C-----CEEEEEeCCHHHH
Confidence 68999998 99999999999998 7 8999999986543
No 488
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.52 E-value=2.9 Score=42.28 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=25.8
Q ss_pred CceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012349 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIW 78 (465)
Q Consensus 43 ~mkIaIIGaG-amGsalA~~La~~~G~~~~~~~V~l~ 78 (465)
-++|+|||.| .+|..+|..|.+. | ..|++.
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~-g-----AtVtv~ 187 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNA-G-----ASVSVC 187 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CEEEEE
Confidence 3799999999 8999999999887 6 678776
No 489
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=82.50 E-value=1.3 Score=43.63 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=42.9
Q ss_pred hHHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|+....+|+|...-. ..+|+|+|.|.+|+..+..|++. |. .+++|+|-+.-.+.
T Consensus 9 ~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRs-Gi----g~itlID~D~v~vT 68 (263)
T COG1179 9 YRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARS-GI----GRITLIDMDDVCVT 68 (263)
T ss_pred HHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHc-CC----CeEEEEeccccccc
Confidence 466777777777653222 25799999999999999999999 83 57899988764443
No 490
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.49 E-value=1.8 Score=46.00 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++|.|+|+|..|.++|..|++. | ++|++++++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~-G-----~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL-G-----AKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence 47899999999999999999999 8 8999999975
No 491
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=82.49 E-value=2.1 Score=39.38 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=28.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|+|||+|.-|.+.|..|++. | .+|.+++..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~-----~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-G-----AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-C-----CeEEEEeccc
Confidence 689999999999999999987 6 8999996654
No 492
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=82.48 E-value=15 Score=36.70 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=33.9
Q ss_pred CCeeEeecchhHHHhH-HHhhhhcCCCCC-CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012349 15 NGLIHHTNGSLEERLD-ELRRLMGKAEGD-PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (465)
Q Consensus 15 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i 88 (465)
-|+......+||+--. .+..+..+.... -++|.-||+| ||+.. ..+++++| .+|+.++.++++.+.+
T Consensus 33 ~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcG-wG~~~-~~~a~~~g-----~~v~gitlS~~Q~~~a 101 (273)
T PF02353_consen 33 CAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCG-WGGLA-IYAAERYG-----CHVTGITLSEEQAEYA 101 (273)
T ss_dssp ----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-T-TSHHH-HHHHHHH-------EEEEEES-HHHHHHH
T ss_pred CeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHH-HHHHHHcC-----cEEEEEECCHHHHHHH
Confidence 3555556667776322 233334443333 2799999999 77664 44555535 6899999888877653
No 493
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=82.48 E-value=2 Score=46.70 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=29.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|+|||+|.+|+++|..|++..+ ..+|.++.+..
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~----~~~V~VlEk~~ 80 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTN----LKKIALIERRS 80 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCC----CCEEEEEecCc
Confidence 3589999999999999999998512 14899999864
No 494
>PRK07024 short chain dehydrogenase; Provisional
Probab=82.47 E-value=2.4 Score=41.02 Aligned_cols=37 Identities=16% Similarity=0.348 Sum_probs=31.6
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
+++|.|.| +|.+|.+++..|+++ | .+|.+.+|+.+..
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~-G-----~~v~~~~r~~~~~ 39 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ-G-----ATLGLVARRTDAL 39 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 36899998 589999999999998 7 8999999987543
No 495
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.47 E-value=2.5 Score=42.17 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++|.|.|+ |.+|.++|..|+++ | ++|.+.+|+.+..+
T Consensus 41 k~vlItGasggIG~~la~~La~~-G-----~~Vi~~~R~~~~l~ 78 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR-G-----ATVVAVARREDLLD 78 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 67999997 99999999999998 7 89999999876544
No 496
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=82.46 E-value=1.7 Score=46.97 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|+|||+|..|...|..|++. | ++|+++++.+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~-g-----~~V~v~e~~~ 176 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRA-G-----HTVTVFERED 176 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 7999999999999999999988 7 8999998765
No 497
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=82.37 E-value=1.7 Score=46.39 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=29.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||+|||+|.-|.+.|..+++. | .+|.+++++.
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~-g-----~~V~lie~~~ 33 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQN-G-----KNVTLIDEAD 33 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCc
Confidence 6999999999999999999988 7 7899999863
No 498
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=82.36 E-value=2 Score=44.60 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=30.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.|||.|.|+ |.+|+.++..|.+. | ++|+.++|..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~-G-----~~V~~v~r~~ 55 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAE-G-----HYIIASDWKK 55 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhC-C-----CEEEEEEecc
Confidence 489999998 99999999999988 7 8999999864
No 499
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=82.31 E-value=1.7 Score=43.27 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=30.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||.|.|+ |.+|..++..|++. | ++|++++|+++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 35 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-G-----EEVRVLVRPTS 35 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-C-----CEEEEEEecCc
Confidence 58999996 99999999999998 7 89999999865
No 500
>PRK07208 hypothetical protein; Provisional
Probab=82.19 E-value=1.7 Score=46.35 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=30.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++++|+|||+|--|.+.|..|+++ | ++|+++..++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~-g-----~~v~v~E~~~ 37 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR-G-----YPVTVLEADP 37 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 446899999999999999999998 7 8999998765
Done!