BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012354
(465 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GS60|HCAR_ARATH 7-hydroxymethyl chlorophyll a reductase, chloroplastic
OS=Arabidopsis thaliana GN=HCAR PE=1 SV=1
Length = 462
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/428 (88%), Positives = 405/428 (94%)
Query: 38 KSVKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLE 97
K VKLREDWR++S+PIPPGGTYPAKDHCS+CGLCDTYYIAHVK+ACAFLGDGMSRIE LE
Sbjct: 35 KKVKLREDWREKSRPIPPGGTYPAKDHCSQCGLCDTYYIAHVKEACAFLGDGMSRIESLE 94
Query: 98 TVVHGRGRRKDSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVC 157
VVHGRGR+ DSL DTY GVH+E LYARK KPVEGAQWTGIVTTIAIEMLK+ MVEAVVC
Sbjct: 95 PVVHGRGRKADSLQDTYFGVHQEQLYARKLKPVEGAQWTGIVTTIAIEMLKSNMVEAVVC 154
Query: 158 VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQ 217
VQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVKRLLFCGVGCQVQ
Sbjct: 155 VQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVKRLLFCGVGCQVQ 214
Query: 218 ALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHL 277
ALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYEFMQDYKV LKHL
Sbjct: 215 ALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYEFMQDYKVQLKHL 274
Query: 278 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYI 337
DGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY+G++MT HPQYI
Sbjct: 275 DGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKYSGLNMTDHPQYI 334
Query: 338 TVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNL 397
TVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+GP+QPAP FVGN+
Sbjct: 335 TVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQGPAQPAPLFVGNI 394
Query: 398 IAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQ 457
IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYAKKIVEMYN+NGQ
Sbjct: 395 IAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYAKKIVEMYNKNGQ 454
Query: 458 IDQMLSSK 465
ID+MLS K
Sbjct: 455 IDKMLSKK 462
>sp|Q7XTG7|HCAR_ORYSJ 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Oryza
sativa subsp. japonica GN=HCAR PE=3 SV=2
Length = 471
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/461 (81%), Positives = 412/461 (89%), Gaps = 9/461 (1%)
Query: 11 SSLPLSISTICCSSSSSSSSSPSKDGSKSVK--------LREDWRKRSKPIPPGGTYPAK 62
SSLP + CCS SS SSPS + K LREDWR+RSK IPPGG YPAK
Sbjct: 12 SSLPCATKPPCCSVSSVLPSSPSSHQCRGRKTSCGSIRALREDWRERSKAIPPGGVYPAK 71
Query: 63 DHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELL 122
DHCS+CGLCDTYYIAHVK+ACAFLGDGMSR+E LE +VHGRGR++D +D+ Y GV+E+LL
Sbjct: 72 DHCSQCGLCDTYYIAHVKNACAFLGDGMSRVEDLEPLVHGRGRKQD-MDEMYFGVYEQLL 130
Query: 123 YARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAA 182
YARK KPVEGAQWTGIVTTIA+EMLK MV+AVVCVQSDPDDRL+P PVLARTP+EV+AA
Sbjct: 131 YARKMKPVEGAQWTGIVTTIAVEMLKANMVDAVVCVQSDPDDRLAPMPVLARTPDEVIAA 190
Query: 183 KGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNG 242
KGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNG
Sbjct: 191 KGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNG 250
Query: 243 TREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSC 302
TREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPA DLVDVIAPSC
Sbjct: 251 TREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAKDLVDVIAPSC 310
Query: 303 YSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTIS 362
YSCFDYTN LADLVVGYMGVPKY G+SMTQHPQYITVRN+RG+EMLSLV+ LLE TPT+S
Sbjct: 311 YSCFDYTNGLADLVVGYMGVPKYPGVSMTQHPQYITVRNDRGREMLSLVEGLLESTPTVS 370
Query: 363 SGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTI 422
SG R+PFV+ETVKADD AK GRGPSQPAP FVGN+IAF +NL+GPKGLEFARYSLDYHTI
Sbjct: 371 SGVRQPFVIETVKADDEAKQGRGPSQPAPTFVGNVIAFLLNLIGPKGLEFARYSLDYHTI 430
Query: 423 RNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLS 463
RNYLHVNRAWGK+RA++H+PSYAKKIVE Y+++G+I+ ML
Sbjct: 431 RNYLHVNRAWGKQRAEQHIPSYAKKIVEAYDKDGRIESMLQ 471
>sp|P46015|Y1601_NOSS1 Uncharacterized protein all1601 OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=all1601 PE=4 SV=2
Length = 397
Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/405 (54%), Positives = 280/405 (69%), Gaps = 19/405 (4%)
Query: 48 KRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEGLETVVHGRGRRK 107
+++K + P PAK+ CS CGLCDTYYI +VK+ACAF+ +I+ LE H R R
Sbjct: 8 QKAKALKPNSRRPAKELCSECGLCDTYYIHYVKEACAFI---TQQIDTLEEQAHQRSRNL 64
Query: 108 DSLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLS 167
D+ D+ Y GVH++++ A+K +P+ GAQWTGIV++IAIEML G+VE VVCVQ+ +DR
Sbjct: 65 DNPDELYFGVHQDMIAAKKQQPIAGAQWTGIVSSIAIEMLNHGLVEGVVCVQNSKEDRFQ 124
Query: 168 PRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLN 227
P PV+ARTPEE+LAA+ KPTLSPNL+ L VE +G+KRLL GVGCQ+QALR+VE L
Sbjct: 125 PMPVIARTPEEILAARVNKPTLSPNLSILEQVEKSGMKRLLVIGVGCQIQALRAVEKKLG 184
Query: 228 LEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYF 287
LEKLYVLGT CVDN TR GL KFL+ S PETV+HYEFMQD+++H KH DG IE+VP+F
Sbjct: 185 LEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVHYEFMQDFRIHFKHEDGSIEKVPFF 244
Query: 288 CLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEM 347
L N L DV APSC SCFDY N+LADLVVGYMG P Q+I VRN+ GKEM
Sbjct: 245 GLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFGW--------QWILVRNDTGKEM 296
Query: 348 LSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGP 407
L LV+N L+ P +S G+R+ V + + A D P +V ++ I+ +GP
Sbjct: 297 LDLVQNQLDTQPVMSEGNRQEAVQQGISAYDKGVT-------LPMWVAKIMGVVIDKIGP 349
Query: 408 KGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMY 452
KGLE+AR+S+D H RNYL V R +K A H+P +AK+IV Y
Sbjct: 350 KGLEYARFSIDSHFTRNYLFVKRNHPEKLA-AHVPEFAKRIVGQY 393
>sp|P80490|FRHB_METBF Coenzyme F420 hydrogenase subunit beta OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=frhB PE=1 SV=2
Length = 291
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 126/261 (48%), Gaps = 25/261 (9%)
Query: 110 LDDTYLGVHEELLYARKT--KPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLS 167
++D YLG + + AR T + ++ AQ GI T + + L+ G ++ + V + D
Sbjct: 2 IEDPYLGKYVTCVSARSTDKEILKKAQDGGIATALMVYALEEGFIDGTI-VAGEGDKPWQ 60
Query: 168 PRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGCQVQALRSVE-HH 225
P+P +A T EE+L A+G + ++SP ++ L + G+ ++ GV CQ+QA+R + +
Sbjct: 61 PKPEVAMTREEILKARGTRYSISPQISWLKEATRSFGLDKVGVTGVCCQMQAVRKAQLYP 120
Query: 226 LNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGH 280
+N+ + + +G C++N + L ++ +++ + + K + G+
Sbjct: 121 INMRDVPGKVAFTVGLFCMENFPYKSLQSIVEDHANQSLGSVKKMEITKGKFWVYTERGN 180
Query: 281 IEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVR 340
+ VP L A + P C+ C DY + LAD+ G +G P G S + +R
Sbjct: 181 VATVP---LKATHKYE--QPGCHVCLDYVSNLADISTGSVGSPD--GWST------VFIR 227
Query: 341 NERGKEMLS--LVKNLLEITP 359
+ G E+ S + + E P
Sbjct: 228 TKVGNEIWSKAVADGMFETKP 248
>sp|Q00391|FRHB_METVO Coenzyme F420 hydrogenase subunit beta OS=Methanococcus voltae
GN=frhB PE=3 SV=1
Length = 280
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 118/254 (46%), Gaps = 45/254 (17%)
Query: 115 LGVHEELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVL 172
G ++ + AR T ++ AQ G V+ I L++ +++ V V +D +D + P +
Sbjct: 3 FGNYKTAISARATDKEILKKAQDGGYVSAAHIYGLESKLLDGV-SVAADTEDGCNAAPKV 61
Query: 173 ARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGCQVQALRSVEHH----LN 227
A TPEEVL A G K T+SPN++ L V ++++ G CQVQA+R + + +
Sbjct: 62 ATTPEEVLNAAGAKYTVSPNVSVLKDAVREYALEKVGIVGTPCQVQAIRKLIKYPMGFRH 121
Query: 228 LEKLYVLGTNCVDNGTREG------------LDKFLKAASSEPETVLHYEFMQDYKVHLK 275
+ V+G C++N + EG +D LK + + ++ ++ V LK
Sbjct: 122 TDSRIVMGIFCMENFSYEGMKAIVEEYAGIRMDDVLKTDIGKGKFWVYSKYGDVKSVKLK 181
Query: 276 HLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQ 335
D H+ E SC+ C DYT LAD+ G +G P G S
Sbjct: 182 --DTHMYE---------------QKSCHICTDYTAELADISTGSVGSP--DGWST----- 217
Query: 336 YITVRNERGKEMLS 349
I +R E+G+ ++
Sbjct: 218 -IFIRTEKGEAYIN 230
>sp|Q60341|FRHB_METJA Coenzyme F420 hydrogenase subunit beta OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=frhB PE=3 SV=1
Length = 287
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 30/258 (11%)
Query: 115 LGVHEELLYARKT--KPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVL 172
G +++++ AR T + ++ AQ GIV+T I L+ +++ V+ +D P +
Sbjct: 9 FGSYKKVVSARSTLKEVLKKAQDGGIVSTAFIYGLENNLLDGVIV--ADNAGEFKAVPKV 66
Query: 173 ARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQVQALRSVE------HH 225
A TPEEVL A G K T+ PN++ L + V G +++ G CQV+A+R + H
Sbjct: 67 ATTPEEVLEAAGTKYTVCPNISVLKSAVREYGCEKIGVVGTPCQVRAVRKLMKYPVGFRH 126
Query: 226 LNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQ-DYKVHLKHLDGHIEE 283
+ + ++G C++N GL ++ + E V+ + + + V+ + E
Sbjct: 127 VPDKIALIIGIFCMENFPYYGLKLIVEEHCGVKMEDVVKMDIGKGKFWVYTRW-----GE 181
Query: 284 VPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNER 343
L + IA C+ C DYT LAD+ G +G P G S + +R +
Sbjct: 182 TKAIKLKETHPYEQIA--CHVCTDYTAELADISTGSVGSP--DGWST------VFIRTAK 231
Query: 344 GKEMLS-LVKN-LLEITP 359
G+E+ + +V++ LE+ P
Sbjct: 232 GEEIFNKMVEDGYLEVKP 249
>sp|P19499|FRHB_METTH Coenzyme F420 hydrogenase subunit beta OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=frhB PE=1 SV=4
Length = 281
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 16/218 (7%)
Query: 115 LGVHEELLYARKT-KPVEG-AQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVL 172
LG ++E++ AR T + ++ AQ GIVT + L G++E V V + P P++
Sbjct: 3 LGTYKEIVSARSTDREIQKLAQDGGIVTGLLAYALDEGIIEGAV-VAGPGKEFWKPEPMV 61
Query: 173 ARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQVQALRSVEHH-----L 226
A T +E+ AA G K T SPN+ L V G+++L + CQ +R + +
Sbjct: 62 AMTSDELKAAAGTKYTFSPNVLMLKKAVRQYGIEKLGTVAIPCQTMGIRKAQTYPFGVRF 121
Query: 227 NLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVP 285
+K+ +L G C++N L F+ L+ E ++ + + ++
Sbjct: 122 VADKIKLLVGIYCMENFPYTSLQTFICEKLG-----LNMELVEKMDIGKGKFWVYTQDDV 176
Query: 286 YFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVP 323
Y LP + C C DY LAD+ G +G P
Sbjct: 177 Y-TLPLKETHGYEQAGCKICKDYVAELADVSTGSVGSP 213
>sp|Q58280|Y870_METJA Uncharacterized protein MJ0870 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0870 PE=3 SV=1
Length = 620
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 114/263 (43%), Gaps = 47/263 (17%)
Query: 118 HEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPE 177
+E+ YA+ +EG Q G+VT +L+ G ++ + V D+ P ++ + E
Sbjct: 71 YEKYYYAKSD--IEG-QDGGVVTAFLKYLLENGKIDGAIVV---GDECWKPVSLVVQNAE 124
Query: 178 EVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVE-------HHLNLEK 230
++L K +S L+ L G++++ G+ CQ+ LR ++ H L L +
Sbjct: 125 DLLKTAKSKYAIS-TLDALRKAGEMGLEKVAVVGLPCQINGLRKLQYFPYHAKHDLELGR 183
Query: 231 ----------LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGH 280
Y++G C + + + + L + E V ++ + L +++G
Sbjct: 184 NGKPVKLPKIEYLIGLFCTEKFRYDNMKEVLSKHGIDIEKVEKFDIKKGK--LLVYVNGE 241
Query: 281 IEEVPYFCLPANDLVDV-IAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITV 339
+E DL + I C C D+ +AD+ VG +G P G S I +
Sbjct: 242 KKEF--------DLKEFEICSGCKMCRDFDAEMADVSVGCVGSP--DGYST------III 285
Query: 340 RNERGKEMLSLVKNLLEITPTIS 362
R E+G+E +KN +E+ ++
Sbjct: 286 RTEKGEE----IKNAVELKEGVN 304
>sp|P06130|FDHB_METFO Formate dehydrogenase subunit beta OS=Methanobacterium formicicum
GN=fdhB PE=1 SV=1
Length = 399
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 31/249 (12%)
Query: 120 ELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPE 177
++ YA+ + E ++ G VTT+ +LK G+V+AV+ V S D P+L PE
Sbjct: 6 DMFYAKSSDAEIAEAGEYGGAVTTLLKFLLKEGIVDAVLAVDSSA-DLYDVVPILIEDPE 64
Query: 178 EVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVE----HHLNLEKLYV 233
+V+ A G + NL + G + + A+ VE +N + + +
Sbjct: 65 DVVKAAGSLHFGTLNLAKVVTRYLDGAQDMKIAVTVKPCDAMTMVELMKREKVNADNVIM 124
Query: 234 LGTNCVDNGT------REGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYF 287
+G NC GT R+ +++F + +P++V+ E + K+ ++ DG +E+P
Sbjct: 125 VGLNC--GGTMPPVKGRQMMEEFYEV---DPDSVVKEEIAKG-KLIVETEDGTEKEIPI- 177
Query: 288 CLPANDLVDV---IAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERG 344
++L D +C C +ADL G GV + +I V + +G
Sbjct: 178 ----DELEDEGFGRRTNCRRCEVNIPRMADLACGNWGVIG----PLAGKATFIEVCSPKG 229
Query: 345 KEMLSLVKN 353
E+L K
Sbjct: 230 AEVLEKAKE 238
>sp|Q58135|Y725_METJA Uncharacterized protein MJ0725 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0725 PE=3 SV=1
Length = 261
Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 19/231 (8%)
Query: 133 AQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPN 192
AQ G TT+ L+ G+++AVV V D P LA TP E+L + K ++SPN
Sbjct: 14 AQDGGFTTTLLSYCLENGILDAVVVV---GDKNWKPVAYLATTPTELLKSTKSKYSISPN 70
Query: 193 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLK 252
N L ++ G+ C + L ++ L L+ +G C N + + +K
Sbjct: 71 -NKLLEYATENYDKVGLVGLPCHI--LGGLQFDLTLK----VGLFCTKNFYYDTIKSIIK 123
Query: 253 AA------SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCF 306
+ +F+ + + K G E+V Y +P ++ + C C
Sbjct: 124 ERFGVNIDEVAKMNITKGKFVVE-TLKKKGFAGT-EKVVYE-IPIKEIEKLCNLGCRVCT 180
Query: 307 DYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 357
D++ AD+ VG +G + ++ + NE ++ L VK ++I
Sbjct: 181 DFSAKYADVSVGSVGSEDGWNTVIVRNKMVEDIINEMAEKGLIEVKETVDI 231
>sp|Q58744|Y1349_METJA Uncharacterized protein MJ1349 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1349 PE=3 SV=1
Length = 360
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 60/241 (24%)
Query: 115 LGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLAR 174
LG + + A+ + ++ AQ G+VT I G+++ + V D L P LA
Sbjct: 99 LGNILKAVRAKASIEIKNAQNGGVVTAILANAFDEGLIDGAI-VMMDDKWTLEPESYLAL 157
Query: 175 TPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVL 234
+ E+VL + G K + G ++AL++ L+KL V+
Sbjct: 158 SKEDVLKSAGSK----------------------YLWKGPILKALKTAVMEKKLKKLAVV 195
Query: 235 GTNCVDNGT--------------REGLD-----------------KFLKAASSEPETVLH 263
GT CV N RE + K L EP V
Sbjct: 196 GTPCVINAIYQILSSDNDLLKPFREAIRLKIALFCFETYDYSKMIKKLNEDGIEPWEVKK 255
Query: 264 YEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVP 323
+ ++ K+ + ++G+ E D+ + C C D+T +D+ VG +G
Sbjct: 256 MD-IESGKLKITLINGNTVEYKL-----KDVESAMRNGCKVCGDFTGLTSDISVGNVGTE 309
Query: 324 K 324
K
Sbjct: 310 K 310
>sp|Q5P316|RL18_AROAE 50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1)
GN=rplR PE=3 SV=1
Length = 117
Score = 33.1 bits (74), Expect = 4.2, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 363 SGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYH 420
SG R TV+AD +++ G ++ A + VG LIA G + + F R YH
Sbjct: 43 SGSRVLAAASTVEADVRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFDRAGFQYH 100
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1
Length = 658
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 274 LKHLDGHI--EEVPYFCLPANDL-----VDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 326
LK GH+ + VP FCLP +L VDVI S Y C + + Y + +YT
Sbjct: 68 LKECSGHVFVDSVPEFCLPETELLDLSTVDVILISNYHCM--------MALPY--ITEYT 117
Query: 327 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSG 364
G + T + TV + G+ ++ + N +E P S
Sbjct: 118 GFTGTVYATEPTV--QIGRLLMEELVNSIERVPKAQSA 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,944,580
Number of Sequences: 539616
Number of extensions: 7930700
Number of successful extensions: 26886
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 26773
Number of HSP's gapped (non-prelim): 93
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)