Query 012354
Match_columns 465
No_of_seqs 262 out of 681
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 01:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09326 F420H2 dehydrogenase 100.0 1.2E-53 2.5E-58 437.3 25.2 271 61-361 10-304 (341)
2 TIGR03289 frhB coenzyme F420 h 100.0 7.2E-53 1.6E-57 419.3 28.2 233 115-362 1-245 (275)
3 COG1035 FrhB Coenzyme F420-red 100.0 9.8E-53 2.1E-57 423.7 25.3 266 63-360 5-293 (332)
4 PRK09325 coenzyme F420-reducin 100.0 1.6E-51 3.4E-56 411.4 26.4 234 114-362 2-247 (282)
5 PF04432 FrhB_FdhB_C: Coenzyme 100.0 5.6E-34 1.2E-38 262.8 17.0 149 202-364 2-156 (161)
6 PF04422 FrhB_FdhB_N: Coenzyme 99.8 7.3E-21 1.6E-25 157.0 9.0 80 119-198 1-82 (82)
7 PF14697 Fer4_21: 4Fe-4S diclu 97.1 0.00023 5.1E-09 55.1 1.3 40 60-99 3-53 (59)
8 COG1143 NuoI Formate hydrogenl 96.8 0.00046 9.9E-09 64.8 0.9 39 58-99 50-109 (172)
9 PF13237 Fer4_10: 4Fe-4S diclu 96.4 0.0013 2.8E-08 48.9 0.9 40 59-98 3-52 (52)
10 PF12837 Fer4_6: 4Fe-4S bindin 95.7 0.0022 4.7E-08 40.9 -0.6 18 60-77 4-21 (24)
11 PF12797 Fer4_2: 4Fe-4S bindin 95.5 0.0039 8.5E-08 38.9 0.1 18 59-76 4-21 (22)
12 PRK08318 dihydropyrimidine deh 95.1 0.0085 1.8E-07 63.6 1.2 61 60-129 339-413 (420)
13 PF00037 Fer4: 4Fe-4S binding 94.8 0.0079 1.7E-07 38.2 0.0 17 61-77 4-20 (24)
14 PF12838 Fer4_7: 4Fe-4S diclus 94.7 0.0071 1.5E-07 45.0 -0.6 20 64-86 1-20 (52)
15 PF13187 Fer4_9: 4Fe-4S diclus 94.6 0.01 2.3E-07 44.4 0.2 15 64-78 1-15 (55)
16 COG1144 Pyruvate:ferredoxin ox 94.6 0.014 3E-07 49.0 0.9 50 40-99 19-80 (91)
17 PRK08348 NADH-plastoquinone ox 94.4 0.013 2.8E-07 51.5 0.4 39 58-99 37-87 (120)
18 PF14697 Fer4_21: 4Fe-4S diclu 94.2 0.02 4.4E-07 44.3 1.1 22 62-85 38-59 (59)
19 PRK06273 ferredoxin; Provision 94.1 0.02 4.4E-07 53.5 1.1 17 61-77 47-63 (165)
20 TIGR02179 PorD_KorD 2-oxoacid: 94.1 0.021 4.7E-07 45.9 1.0 49 41-99 10-69 (78)
21 PRK08222 hydrogenase 4 subunit 93.9 0.021 4.6E-07 54.0 0.8 38 59-99 34-87 (181)
22 COG1149 MinD superfamily P-loo 93.8 0.093 2E-06 52.7 5.0 78 60-149 66-163 (284)
23 PF12800 Fer4_4: 4Fe-4S bindin 93.7 0.034 7.3E-07 32.5 1.1 15 63-77 2-16 (17)
24 TIGR02512 Fe_only_hydrog hydro 93.7 0.014 3E-07 61.2 -1.0 19 60-78 4-22 (374)
25 PRK09626 oorD 2-oxoglutarate-a 93.6 0.03 6.4E-07 47.9 1.2 21 58-78 11-31 (103)
26 TIGR02936 fdxN_nitrog ferredox 93.6 0.022 4.7E-07 47.2 0.2 19 60-78 18-36 (91)
27 PRK05888 NADH dehydrogenase su 93.5 0.037 8.1E-07 51.3 1.7 18 61-78 56-73 (164)
28 PRK12387 formate hydrogenlyase 93.1 0.034 7.4E-07 52.3 0.7 38 59-99 34-87 (180)
29 PRK09625 porD pyruvate flavodo 92.7 0.028 6.1E-07 50.6 -0.4 49 42-100 45-104 (133)
30 COG1145 NapF Ferredoxin [Energ 92.6 0.048 1E-06 45.1 0.8 37 61-100 27-78 (99)
31 CHL00014 ndhI NADH dehydrogena 92.3 0.051 1.1E-06 50.6 0.8 19 60-78 56-74 (167)
32 PRK09623 vorD 2-ketoisovalerat 92.3 0.056 1.2E-06 46.5 0.9 36 61-99 49-95 (105)
33 PRK09624 porD pyuvate ferredox 92.2 0.047 1E-06 47.1 0.3 36 61-99 49-95 (105)
34 TIGR02494 PFLE_PFLC glycyl-rad 92.2 0.059 1.3E-06 54.2 1.1 40 57-99 42-96 (295)
35 PRK05113 electron transport co 91.5 0.069 1.5E-06 51.0 0.7 39 58-99 109-158 (191)
36 TIGR00403 ndhI NADH-plastoquin 91.5 0.077 1.7E-06 50.3 1.0 20 59-78 58-77 (183)
37 TIGR02912 sulfite_red_C sulfit 91.3 0.077 1.7E-06 54.2 0.8 40 60-99 166-215 (314)
38 PRK06991 ferredoxin; Provision 91.2 0.077 1.7E-06 53.4 0.7 37 60-99 82-129 (270)
39 PRK14028 pyruvate ferredoxin o 91.1 0.098 2.1E-06 53.4 1.3 18 61-78 245-262 (312)
40 COG1142 HycB Fe-S-cluster-cont 91.0 0.093 2E-06 49.0 1.0 35 50-87 69-103 (165)
41 PF12798 Fer4_3: 4Fe-4S bindin 91.0 0.064 1.4E-06 30.4 -0.1 13 65-77 1-13 (15)
42 COG1148 HdrA Heterodisulfide r 90.8 0.1 2.2E-06 56.3 1.1 19 58-77 220-238 (622)
43 TIGR01971 NuoI NADH-quinone ox 90.8 0.11 2.3E-06 45.5 1.1 15 63-77 43-57 (122)
44 PF13247 Fer4_11: 4Fe-4S diclu 90.7 0.041 8.8E-07 47.1 -1.6 30 56-88 33-62 (98)
45 TIGR02060 aprB adenosine phosp 90.5 0.095 2E-06 47.2 0.6 39 58-99 3-59 (132)
46 PF13484 Fer4_16: 4Fe-4S doubl 90.5 0.097 2.1E-06 40.8 0.6 20 64-86 1-20 (67)
47 COG1152 CdhA CO dehydrogenase/ 90.5 0.42 9.2E-06 52.4 5.4 93 63-159 400-536 (772)
48 COG1144 Pyruvate:ferredoxin ox 90.3 0.15 3.3E-06 42.9 1.5 36 50-88 51-88 (91)
49 CHL00065 psaC photosystem I su 90.2 0.12 2.5E-06 42.2 0.8 18 61-78 7-24 (81)
50 COG1149 MinD superfamily P-loo 90.2 0.14 3E-06 51.5 1.4 36 49-87 84-120 (284)
51 TIGR02176 pyruv_ox_red pyruvat 90.0 0.14 3.1E-06 61.1 1.6 43 415-461 1110-1156(1165)
52 COG1148 HdrA Heterodisulfide r 89.8 0.12 2.7E-06 55.6 0.7 49 47-99 545-601 (622)
53 TIGR00402 napF ferredoxin-type 89.6 0.21 4.6E-06 42.6 2.0 37 61-100 32-81 (101)
54 PLN00071 photosystem I subunit 89.4 0.13 2.8E-06 41.8 0.5 18 61-78 7-24 (81)
55 PRK09477 napH quinol dehydroge 89.3 0.16 3.6E-06 50.9 1.2 40 60-99 205-256 (271)
56 TIGR02745 ccoG_rdxA_fixG cytoc 89.2 0.16 3.4E-06 54.5 1.0 35 62-100 230-270 (434)
57 COG1245 Predicted ATPase, RNas 89.2 0.14 2.9E-06 55.0 0.5 35 48-85 33-69 (591)
58 PF13187 Fer4_9: 4Fe-4S diclus 89.1 0.11 2.3E-06 38.8 -0.2 17 61-77 36-52 (55)
59 TIGR02163 napH_ ferredoxin-typ 89.0 0.17 3.7E-06 50.4 1.0 38 62-99 200-248 (255)
60 PF13746 Fer4_18: 4Fe-4S diclu 88.8 0.17 3.6E-06 40.4 0.7 20 59-78 46-65 (69)
61 TIGR02936 fdxN_nitrog ferredox 88.6 0.18 3.8E-06 41.7 0.7 24 60-86 67-90 (91)
62 TIGR01944 rnfB electron transp 88.6 0.15 3.2E-06 47.5 0.3 38 59-99 109-157 (165)
63 COG2768 Uncharacterized Fe-S c 88.6 0.2 4.3E-06 51.0 1.2 50 39-98 175-234 (354)
64 PF13459 Fer4_15: 4Fe-4S singl 88.5 0.18 3.8E-06 39.5 0.7 27 60-90 3-29 (65)
65 TIGR00276 iron-sulfur cluster 88.4 0.22 4.8E-06 50.4 1.5 25 52-78 150-174 (282)
66 PRK02651 photosystem I subunit 88.2 0.2 4.3E-06 40.6 0.8 17 62-78 8-24 (81)
67 PRK10194 ferredoxin-type prote 88.1 0.2 4.2E-06 46.4 0.8 35 62-99 33-80 (163)
68 COG4231 Indolepyruvate ferredo 88.0 0.26 5.6E-06 54.5 1.7 38 58-100 572-623 (640)
69 COG1146 Ferredoxin [Energy pro 87.7 0.24 5.2E-06 39.0 1.0 38 63-100 8-56 (68)
70 COG0437 HybA Fe-S-cluster-cont 87.1 0.24 5.3E-06 47.8 0.8 28 57-87 94-121 (203)
71 COG1146 Ferredoxin [Energy pro 86.8 0.28 6E-06 38.6 0.9 31 47-87 32-62 (68)
72 TIGR03048 PS_I_psaC photosyste 86.7 0.26 5.5E-06 40.0 0.6 17 62-78 7-23 (80)
73 PRK09898 hypothetical protein; 86.7 0.26 5.5E-06 47.5 0.7 37 60-99 118-168 (208)
74 TIGR03478 DMSO_red_II_bet DMSO 86.7 0.15 3.3E-06 52.2 -0.9 14 63-76 129-144 (321)
75 COG1141 Fer Ferredoxin [Energy 86.5 0.2 4.3E-06 40.1 -0.2 19 59-77 4-22 (68)
76 TIGR02700 flavo_MJ0208 archaeo 86.4 0.25 5.4E-06 48.5 0.5 37 60-99 145-191 (234)
77 TIGR03294 FrhG coenzyme F420 h 86.1 0.2 4.4E-06 49.1 -0.3 40 59-101 170-219 (228)
78 PRK15449 ferredoxin-like prote 85.7 0.3 6.5E-06 41.6 0.5 25 54-78 52-76 (95)
79 TIGR03224 benzo_boxA benzoyl-C 85.2 0.34 7.3E-06 51.5 0.8 37 60-99 7-53 (411)
80 PRK13795 hypothetical protein; 85.2 0.3 6.5E-06 54.8 0.4 35 62-99 580-626 (636)
81 TIGR03275 methan_mark_8 putati 85.1 15 0.00034 36.5 12.0 85 139-231 77-166 (259)
82 COG1139 Uncharacterized conser 85.0 0.28 6.2E-06 52.0 0.1 35 42-78 282-323 (459)
83 PRK13984 putative oxidoreducta 84.7 0.47 1E-05 52.6 1.7 22 56-77 38-59 (604)
84 PRK07118 ferredoxin; Validated 84.6 0.29 6.2E-06 49.6 -0.1 34 63-99 139-182 (280)
85 TIGR03149 cyt_nit_nrfC cytochr 84.5 0.41 9E-06 46.8 1.0 16 62-77 91-108 (225)
86 COG2221 DsrA Dissimilatory sul 84.5 0.26 5.7E-06 50.3 -0.4 37 59-98 168-214 (317)
87 TIGR01582 FDH-beta formate deh 84.5 0.29 6.4E-06 49.6 -0.1 38 61-100 89-139 (283)
88 TIGR02486 RDH reductive dehalo 84.2 0.63 1.4E-05 47.9 2.2 21 62-85 204-224 (314)
89 PF13237 Fer4_10: 4Fe-4S diclu 83.8 0.36 7.8E-06 35.6 0.2 16 61-76 37-52 (52)
90 KOG3256 NADH:ubiquinone oxidor 83.5 0.34 7.3E-06 45.2 -0.1 36 62-100 110-165 (212)
91 PRK13409 putative ATPase RIL; 83.5 0.47 1E-05 52.8 1.0 28 56-86 42-69 (590)
92 PRK08764 ferredoxin; Provision 83.3 0.48 1E-05 42.6 0.9 36 61-99 83-129 (135)
93 PRK07569 bidirectional hydroge 83.2 0.4 8.6E-06 47.1 0.3 19 58-76 141-159 (234)
94 TIGR01660 narH nitrate reducta 82.7 0.4 8.7E-06 51.5 0.1 36 61-99 179-228 (492)
95 PF13370 Fer4_13: 4Fe-4S singl 82.7 0.37 8E-06 37.0 -0.1 17 61-77 2-18 (58)
96 PRK14993 tetrathionate reducta 82.6 0.38 8.3E-06 47.7 -0.1 35 62-99 97-144 (244)
97 PRK05035 electron transport co 82.3 0.55 1.2E-05 53.3 0.9 39 61-99 368-423 (695)
98 COG2878 Predicted NADH:ubiquin 81.7 0.46 9.9E-06 45.1 0.0 40 58-100 110-160 (198)
99 TIGR00403 ndhI NADH-plastoquin 81.3 0.7 1.5E-05 43.8 1.2 25 60-87 99-123 (183)
100 CHL00014 ndhI NADH dehydrogena 81.3 0.73 1.6E-05 42.9 1.3 25 60-87 96-120 (167)
101 TIGR00397 mauM_napG MauM/NapG 81.2 0.61 1.3E-05 45.3 0.7 36 64-100 137-190 (213)
102 PRK10882 hydrogenase 2 protein 81.2 0.61 1.3E-05 48.3 0.7 37 61-100 108-158 (328)
103 PRK09624 porD pyuvate ferredox 80.8 0.71 1.5E-05 39.8 0.9 25 60-87 78-102 (105)
104 COG1600 Uncharacterized Fe-S p 80.8 0.75 1.6E-05 47.7 1.2 26 51-78 174-200 (337)
105 PRK14028 pyruvate ferredoxin o 80.5 0.78 1.7E-05 46.8 1.2 25 61-88 287-311 (312)
106 cd07030 RNAP_D D subunit of Ar 79.8 0.57 1.2E-05 46.6 0.0 35 62-99 168-213 (259)
107 TIGR01945 rnfC electron transp 79.5 0.97 2.1E-05 48.5 1.6 19 60-78 360-378 (435)
108 PRK09623 vorD 2-ketoisovalerat 79.5 0.85 1.8E-05 39.2 1.0 26 59-87 77-102 (105)
109 PF09872 DUF2099: Uncharacteri 78.4 41 0.00089 33.6 12.2 84 139-230 77-165 (258)
110 PRK00783 DNA-directed RNA poly 78.1 0.75 1.6E-05 45.9 0.2 35 62-99 168-213 (263)
111 PRK10194 ferredoxin-type prote 78.1 0.95 2.1E-05 41.8 0.9 32 65-99 106-152 (163)
112 TIGR00314 cdhA CO dehydrogenas 77.9 0.74 1.6E-05 52.5 0.1 39 61-99 397-451 (784)
113 TIGR02951 DMSO_dmsB DMSO reduc 77.6 0.92 2E-05 41.7 0.7 15 63-77 62-78 (161)
114 PLN00071 photosystem I subunit 77.6 1.1 2.4E-05 36.3 1.0 22 61-85 44-65 (81)
115 TIGR02179 PorD_KorD 2-oxoacid: 77.1 1.2 2.7E-05 35.5 1.2 24 61-87 53-76 (78)
116 PRK09476 napG quinol dehydroge 77.1 0.98 2.1E-05 45.1 0.7 40 60-100 134-199 (254)
117 PRK05888 NADH dehydrogenase su 77.1 1.3 2.8E-05 41.0 1.5 26 60-88 94-119 (164)
118 PRK09626 oorD 2-oxoglutarate-a 76.5 1.3 2.8E-05 37.8 1.2 25 61-88 51-75 (103)
119 PF12838 Fer4_7: 4Fe-4S diclus 76.5 0.62 1.4E-05 34.4 -0.6 19 59-77 32-50 (52)
120 PRK12769 putative oxidoreducta 76.2 1.2 2.6E-05 50.1 1.2 22 56-77 78-99 (654)
121 PRK09625 porD pyruvate flavodo 76.2 1.1 2.4E-05 40.2 0.8 19 60-78 86-104 (133)
122 PRK12809 putative oxidoreducta 75.9 1.3 2.7E-05 49.8 1.3 42 55-99 77-131 (639)
123 PRK00941 acetyl-CoA decarbonyl 75.9 0.88 1.9E-05 52.0 0.0 38 62-99 403-456 (781)
124 TIGR02912 sulfite_red_C sulfit 75.8 1.2 2.5E-05 45.6 0.9 28 58-88 196-223 (314)
125 PF13183 Fer4_8: 4Fe-4S diclus 75.6 0.75 1.6E-05 34.4 -0.4 15 63-77 3-17 (57)
126 COG4231 Indolepyruvate ferredo 75.5 1.1 2.4E-05 49.7 0.7 17 61-77 606-622 (640)
127 cd01916 ACS_1 Acetyl-CoA synth 75.5 0.86 1.9E-05 51.8 -0.1 39 61-99 363-417 (731)
128 PRK07118 ferredoxin; Validated 75.5 1 2.2E-05 45.6 0.3 36 50-88 155-190 (280)
129 TIGR00273 iron-sulfur cluster- 75.0 1.3 2.8E-05 47.6 1.0 18 61-78 291-308 (432)
130 TIGR00397 mauM_napG MauM/NapG 74.9 1.6 3.4E-05 42.4 1.5 27 59-86 171-197 (213)
131 CHL00065 psaC photosystem I su 74.8 1.5 3.2E-05 35.6 1.1 23 61-86 44-66 (81)
132 TIGR02176 pyruv_ox_red pyruvat 74.7 1.3 2.7E-05 53.3 0.9 27 60-87 736-762 (1165)
133 TIGR01971 NuoI NADH-quinone ox 74.3 1.6 3.5E-05 38.0 1.3 24 60-86 79-102 (122)
134 PF13534 Fer4_17: 4Fe-4S diclu 74.2 0.97 2.1E-05 34.4 -0.1 19 60-78 41-59 (61)
135 PRK08348 NADH-plastoquinone ox 73.8 1.4 3.1E-05 38.5 0.8 25 60-87 70-94 (120)
136 COG1143 NuoI Formate hydrogenl 73.6 1.5 3.2E-05 41.4 0.9 23 62-87 94-116 (172)
137 PRK09853 putative selenate red 73.5 1.7 3.6E-05 51.4 1.5 40 60-99 883-940 (1019)
138 PRK10330 formate dehydrogenase 73.0 1.5 3.2E-05 41.1 0.8 14 64-77 57-72 (181)
139 PRK11274 glcF glycolate oxidas 73.0 1.4 3.1E-05 46.3 0.8 15 63-77 23-37 (407)
140 TIGR03336 IOR_alpha indolepyru 72.6 1.6 3.4E-05 48.7 1.0 41 59-99 546-592 (595)
141 PRK02651 photosystem I subunit 72.2 1.9 4.1E-05 34.7 1.2 22 61-85 44-65 (81)
142 TIGR01944 rnfB electron transp 72.0 1.5 3.3E-05 40.7 0.6 24 60-86 140-163 (165)
143 TIGR03287 methan_mark_16 putat 71.1 1.7 3.6E-05 46.0 0.8 37 60-99 299-344 (391)
144 PRK06991 ferredoxin; Provision 70.8 1.4 3.1E-05 44.3 0.2 24 60-86 112-135 (270)
145 TIGR02066 dsrB sulfite reducta 70.6 1.9 4.1E-05 44.9 1.0 32 65-99 183-228 (341)
146 TIGR03048 PS_I_psaC photosyste 70.4 2 4.3E-05 34.8 0.9 17 61-77 43-59 (80)
147 TIGR02163 napH_ ferredoxin-typ 70.4 1.6 3.5E-05 43.4 0.5 25 59-86 230-254 (255)
148 TIGR03315 Se_ygfK putative sel 70.4 2.4 5.2E-05 50.2 1.9 37 63-99 881-935 (1012)
149 PRK09476 napG quinol dehydroge 70.3 1.5 3.2E-05 43.8 0.2 25 60-85 181-205 (254)
150 PRK11168 glpC sn-glycerol-3-ph 69.9 2.2 4.8E-05 44.6 1.4 17 62-78 6-22 (396)
151 PRK12387 formate hydrogenlyase 69.0 2.3 5E-05 40.0 1.1 25 60-87 70-94 (180)
152 PRK05113 electron transport co 68.8 1.9 4E-05 41.2 0.4 25 60-87 141-165 (191)
153 PF13183 Fer4_8: 4Fe-4S diclus 68.7 1.3 2.8E-05 33.0 -0.5 15 63-77 41-55 (57)
154 COG1145 NapF Ferredoxin [Energ 68.4 2.1 4.5E-05 35.1 0.6 24 60-86 60-83 (99)
155 PRK08318 dihydropyrimidine deh 68.4 2 4.3E-05 45.6 0.6 26 60-87 374-399 (420)
156 TIGR03379 glycerol3P_GlpC glyc 67.8 2.8 6E-05 44.0 1.6 30 215-244 179-208 (397)
157 COG1150 HdrC Heterodisulfide r 67.8 2.6 5.6E-05 40.5 1.1 39 40-78 12-54 (195)
158 COG3383 Uncharacterized anaero 67.7 1.7 3.8E-05 49.2 0.0 40 61-100 147-207 (978)
159 COG0479 FrdB Succinate dehydro 67.3 2.1 4.5E-05 42.3 0.4 15 63-77 142-156 (234)
160 TIGR02060 aprB adenosine phosp 66.1 2.2 4.7E-05 38.5 0.3 24 61-87 43-66 (132)
161 PRK09477 napH quinol dehydroge 66.0 3 6.5E-05 41.8 1.3 24 60-86 239-262 (271)
162 TIGR03290 CoB_CoM_SS_C CoB--Co 66.0 2.5 5.5E-05 38.2 0.7 15 63-77 2-16 (144)
163 TIGR01660 narH nitrate reducta 65.0 3 6.4E-05 45.0 1.1 28 58-88 209-236 (492)
164 PRK05352 Na(+)-translocating N 64.7 2.9 6.3E-05 45.2 1.0 39 61-99 372-429 (448)
165 PRK13030 2-oxoacid ferredoxin 64.6 3.2 6.9E-05 49.8 1.4 44 388-431 1049-1098(1159)
166 PRK08222 hydrogenase 4 subunit 63.2 3.8 8.1E-05 38.8 1.3 22 63-87 73-94 (181)
167 TIGR02700 flavo_MJ0208 archaeo 60.6 3.5 7.7E-05 40.4 0.7 27 58-87 172-198 (234)
168 TIGR00402 napF ferredoxin-type 60.2 4.6 0.0001 34.3 1.3 18 60-77 63-80 (101)
169 PRK06273 ferredoxin; Provision 60.1 4 8.7E-05 38.2 0.9 17 61-77 89-105 (165)
170 TIGR01582 FDH-beta formate deh 60.1 5.1 0.00011 40.7 1.7 30 55-87 116-145 (283)
171 COG0247 GlpC Fe-S oxidoreducta 60.0 4 8.6E-05 42.3 1.0 16 63-78 9-24 (388)
172 PRK08764 ferredoxin; Provision 60.0 4.3 9.4E-05 36.4 1.1 23 60-85 112-134 (135)
173 PF13534 Fer4_17: 4Fe-4S diclu 59.8 3.8 8.3E-05 31.0 0.6 15 64-78 1-15 (61)
174 TIGR03287 methan_mark_16 putat 59.6 3.1 6.6E-05 44.1 0.1 25 60-87 327-351 (391)
175 PRK15033 tricarballylate utili 59.1 4 8.6E-05 43.2 0.8 36 63-100 33-82 (389)
176 PRK09193 indolepyruvate ferred 58.7 5.4 0.00012 47.8 1.9 43 388-430 1056-1104(1165)
177 PRK10882 hydrogenase 2 protein 58.1 4.8 0.0001 41.8 1.2 28 56-86 136-163 (328)
178 TIGR02066 dsrB sulfite reducta 58.0 4 8.7E-05 42.5 0.6 26 56-84 207-232 (341)
179 TIGR02494 PFLE_PFLC glycyl-rad 57.8 3 6.5E-05 41.8 -0.4 24 60-86 79-102 (295)
180 COG2878 Predicted NADH:ubiquin 56.9 3.9 8.5E-05 38.9 0.3 22 62-86 144-165 (198)
181 PF13484 Fer4_16: 4Fe-4S doubl 56.7 5.2 0.00011 30.9 0.9 15 63-77 52-66 (67)
182 PRK09853 putative selenate red 56.5 4.2 9E-05 48.2 0.5 16 62-77 925-940 (1019)
183 PRK10330 formate dehydrogenase 56.4 3.2 6.9E-05 38.9 -0.4 18 60-77 7-24 (181)
184 PRK13029 2-oxoacid ferredoxin 55.4 6.7 0.00015 47.1 1.9 44 388-431 1079-1128(1186)
185 TIGR01973 NuoG NADH-quinone ox 55.0 4.8 0.00011 44.8 0.7 44 58-101 137-198 (603)
186 TIGR02910 sulfite_red_A sulfit 54.8 4.9 0.00011 41.8 0.6 16 62-77 300-315 (334)
187 PTZ00305 NADH:ubiquinone oxido 54.7 5.4 0.00012 40.7 0.9 46 60-105 209-273 (297)
188 TIGR01656 Histidinol-ppas hist 54.4 68 0.0015 28.6 7.9 74 191-264 31-124 (147)
189 PRK07570 succinate dehydrogena 54.2 5.4 0.00012 39.8 0.8 17 61-77 155-171 (250)
190 TIGR01936 nqrA NADH:ubiquinone 54.0 5.4 0.00012 43.1 0.8 17 61-77 371-387 (447)
191 TIGR00384 dhsB succinate dehyd 53.8 5.3 0.00012 38.7 0.6 16 63-78 194-209 (220)
192 PRK12771 putative glutamate sy 53.6 5.2 0.00011 44.1 0.6 36 64-99 511-555 (564)
193 PRK08640 sdhB succinate dehydr 53.4 5.3 0.00012 39.7 0.6 15 63-77 152-166 (249)
194 PRK12577 succinate dehydrogena 52.6 7.7 0.00017 40.1 1.7 15 63-77 152-166 (329)
195 PRK12771 putative glutamate sy 52.4 5.4 0.00012 44.0 0.5 28 45-72 486-513 (564)
196 PRK15055 anaerobic sulfite red 52.4 5.7 0.00012 41.5 0.6 16 63-78 307-322 (344)
197 PRK09898 hypothetical protein; 52.2 7.2 0.00016 37.5 1.3 39 58-99 149-195 (208)
198 TIGR00384 dhsB succinate dehyd 51.9 5.7 0.00012 38.5 0.5 17 62-78 137-153 (220)
199 TIGR03290 CoB_CoM_SS_C CoB--Co 51.1 6.2 0.00013 35.6 0.6 15 63-77 46-60 (144)
200 COG3383 Uncharacterized anaero 50.8 7 0.00015 44.6 1.0 39 40-78 168-207 (978)
201 PRK07860 NADH dehydrogenase su 50.7 6.5 0.00014 45.5 0.8 41 59-99 146-204 (797)
202 TIGR03478 DMSO_red_II_bet DMSO 50.3 7.4 0.00016 40.2 1.1 27 58-87 157-183 (321)
203 PRK09129 NADH dehydrogenase su 49.7 6.4 0.00014 45.2 0.5 41 59-99 140-198 (776)
204 TIGR02484 CitB CitB domain pro 49.1 8.4 0.00018 40.6 1.2 37 63-101 14-64 (372)
205 COG4656 RnfC Predicted NADH:ub 49.0 4.5 9.8E-05 44.1 -0.7 15 64-78 366-380 (529)
206 COG1941 FrhG Coenzyme F420-red 48.8 7.9 0.00017 38.4 0.9 23 61-86 187-210 (247)
207 TIGR03149 cyt_nit_nrfC cytochr 48.0 8.7 0.00019 37.5 1.1 27 58-87 120-146 (225)
208 PRK12576 succinate dehydrogena 47.9 7.4 0.00016 39.4 0.6 16 62-77 151-166 (279)
209 PRK12385 fumarate reductase ir 47.3 7.7 0.00017 38.4 0.6 15 63-77 147-161 (244)
210 PRK07569 bidirectional hydroge 47.1 10 0.00022 37.2 1.4 24 61-87 188-211 (234)
211 TIGR02512 Fe_only_hydrog hydro 46.1 9.9 0.00021 39.9 1.2 18 60-77 47-64 (374)
212 PRK15055 anaerobic sulfite red 45.8 28 0.0006 36.4 4.5 99 139-240 10-137 (344)
213 PRK07570 succinate dehydrogena 45.3 9 0.00019 38.2 0.7 15 64-78 213-227 (250)
214 PLN00129 succinate dehydrogena 45.0 8.5 0.00018 39.0 0.5 14 64-77 188-201 (276)
215 PRK13552 frdB fumarate reducta 44.0 8.3 0.00018 38.1 0.3 16 62-77 148-163 (239)
216 TIGR02910 sulfite_red_A sulfit 43.9 74 0.0016 33.2 7.2 99 139-240 10-136 (334)
217 PRK12386 fumarate reductase ir 43.8 9.3 0.0002 38.2 0.6 16 62-77 141-156 (251)
218 PRK05035 electron transport co 43.5 9.5 0.00021 43.5 0.7 18 61-78 407-424 (695)
219 PRK14993 tetrathionate reducta 42.8 11 0.00024 37.3 1.0 30 56-88 123-152 (244)
220 PRK05950 sdhB succinate dehydr 42.6 10 0.00023 37.0 0.7 16 63-78 198-213 (232)
221 PRK15033 tricarballylate utili 42.5 9.3 0.0002 40.5 0.4 17 61-77 65-81 (389)
222 TIGR02951 DMSO_dmsB DMSO reduc 42.5 13 0.00027 34.2 1.2 29 56-87 88-116 (161)
223 PRK12576 succinate dehydrogena 42.2 9.7 0.00021 38.5 0.5 16 63-78 206-221 (279)
224 PF13419 HAD_2: Haloacid dehal 41.8 1.6E+02 0.0035 25.5 8.3 73 191-265 81-157 (176)
225 PRK09326 F420H2 dehydrogenase 41.7 12 0.00025 38.9 0.9 17 61-77 51-67 (341)
226 PRK12575 succinate dehydrogena 41.4 10 0.00023 37.4 0.5 15 63-77 144-158 (235)
227 TIGR03224 benzo_boxA benzoyl-C 40.6 10 0.00022 40.3 0.4 22 61-85 37-58 (411)
228 PRK11274 glcF glycolate oxidas 40.3 11 0.00023 39.7 0.5 17 62-78 72-88 (407)
229 PRK05950 sdhB succinate dehydr 39.1 12 0.00026 36.6 0.6 16 62-77 140-155 (232)
230 PRK08640 sdhB succinate dehydr 39.0 13 0.00028 37.1 0.7 16 63-78 209-224 (249)
231 PRK08493 NADH dehydrogenase su 38.9 12 0.00027 43.4 0.7 19 58-76 136-154 (819)
232 KOG0063 RNAse L inhibitor, ABC 38.8 11 0.00024 40.7 0.2 20 58-77 45-64 (592)
233 PRK08493 NADH dehydrogenase su 38.0 15 0.00033 42.7 1.3 21 62-85 203-223 (819)
234 TIGR00273 iron-sulfur cluster- 37.9 11 0.00025 40.5 0.2 15 63-77 343-357 (432)
235 PRK09130 NADH dehydrogenase su 37.8 12 0.00027 42.5 0.5 40 60-99 142-199 (687)
236 TIGR03294 FrhG coenzyme F420 h 37.4 8.3 0.00018 37.8 -0.9 19 59-77 199-217 (228)
237 PRK12575 succinate dehydrogena 37.4 13 0.00028 36.7 0.5 16 63-78 201-216 (235)
238 TIGR02064 dsrA sulfite reducta 37.2 14 0.0003 39.4 0.7 26 71-99 250-286 (402)
239 PRK12385 fumarate reductase ir 36.9 14 0.0003 36.6 0.7 15 64-78 204-218 (244)
240 TIGR01945 rnfC electron transp 36.7 15 0.00033 39.4 0.9 18 61-78 400-417 (435)
241 TIGR02484 CitB CitB domain pro 36.5 12 0.00027 39.3 0.2 16 62-77 47-62 (372)
242 COG2221 DsrA Dissimilatory sul 36.4 10 0.00022 39.0 -0.4 21 57-77 195-215 (317)
243 PRK12809 putative oxidoreducta 36.1 18 0.0004 40.6 1.5 38 59-99 50-99 (639)
244 PRK12577 succinate dehydrogena 35.6 14 0.0003 38.2 0.4 16 63-78 209-224 (329)
245 TIGR03336 IOR_alpha indolepyru 35.5 14 0.0003 41.3 0.4 18 59-77 575-592 (595)
246 PRK01221 putative deoxyhypusin 34.3 80 0.0017 32.7 5.6 76 120-213 56-131 (312)
247 PRK06259 succinate dehydrogena 33.9 16 0.00035 39.5 0.5 18 61-78 131-148 (486)
248 PRK11168 glpC sn-glycerol-3-ph 33.4 18 0.00039 37.8 0.8 18 61-78 52-69 (396)
249 PF08844 DUF1815: Domain of un 33.0 32 0.00068 29.4 2.0 47 297-343 30-77 (105)
250 TIGR00314 cdhA CO dehydrogenas 32.6 14 0.00029 42.6 -0.3 17 62-78 436-452 (784)
251 TIGR01428 HAD_type_II 2-haloal 32.4 4E+02 0.0086 24.4 9.8 74 190-265 95-172 (198)
252 PRK08166 NADH dehydrogenase su 32.1 18 0.0004 42.0 0.7 19 58-76 144-162 (847)
253 PRK12386 fumarate reductase ir 31.7 21 0.00045 35.7 0.9 17 62-78 199-215 (251)
254 PRK00783 DNA-directed RNA poly 31.5 17 0.00037 36.2 0.2 23 61-86 197-219 (263)
255 COG1152 CdhA CO dehydrogenase/ 30.7 15 0.00033 40.8 -0.3 17 62-78 437-453 (772)
256 TIGR01668 YqeG_hyp_ppase HAD s 30.4 2E+02 0.0043 26.3 7.2 70 189-264 45-114 (170)
257 TIGR03379 glycerol3P_GlpC glyc 30.3 21 0.00045 37.4 0.7 18 61-78 50-67 (397)
258 TIGR03315 Se_ygfK putative sel 30.3 19 0.00041 42.9 0.3 14 64-77 922-935 (1012)
259 PRK00941 acetyl-CoA decarbonyl 29.6 17 0.00037 41.8 -0.1 16 63-78 442-457 (781)
260 TIGR02252 DREG-2 REG-2-like, H 29.4 2.8E+02 0.0061 25.5 8.2 71 191-264 109-183 (203)
261 cd07030 RNAP_D D subunit of Ar 29.2 20 0.00044 35.6 0.3 40 44-86 179-219 (259)
262 PRK13795 hypothetical protein; 28.9 18 0.00039 40.8 -0.1 19 59-77 608-626 (636)
263 PRK13552 frdB fumarate reducta 28.9 22 0.00048 35.1 0.5 16 63-78 206-221 (239)
264 PRK15449 ferredoxin-like prote 28.6 21 0.00046 30.4 0.3 29 69-100 37-76 (95)
265 TIGR02253 CTE7 HAD superfamily 28.3 3.3E+02 0.0072 25.3 8.5 72 192-265 99-174 (221)
266 PF12641 Flavodoxin_3: Flavodo 28.1 4.8E+02 0.01 24.1 9.4 52 203-254 66-124 (160)
267 COG2440 FixX Ferredoxin-like p 26.9 22 0.00048 30.5 0.1 13 64-76 34-48 (99)
268 COG1142 HycB Fe-S-cluster-cont 26.8 33 0.00072 32.2 1.3 32 64-99 55-96 (165)
269 COG4022 Uncharacterized protei 26.6 6E+02 0.013 25.5 9.8 88 139-234 82-175 (286)
270 PLN00129 succinate dehydrogena 26.3 27 0.00058 35.4 0.6 17 62-78 243-259 (276)
271 TIGR00321 dhys deoxyhypusine s 26.1 2.2E+02 0.0048 29.3 7.1 85 120-225 47-131 (301)
272 COG4656 RnfC Predicted NADH:ub 26.1 24 0.00052 38.8 0.2 35 43-78 385-419 (529)
273 PRK12769 putative oxidoreducta 25.8 35 0.00076 38.5 1.5 37 61-100 52-100 (654)
274 COG1034 NuoG NADH dehydrogenas 25.5 33 0.00073 39.1 1.2 39 61-99 142-198 (693)
275 KOG3256 NADH:ubiquinone oxidor 25.3 30 0.00064 32.6 0.7 24 60-86 147-170 (212)
276 COG1139 Uncharacterized conser 25.3 27 0.0006 37.5 0.5 15 63-77 358-372 (459)
277 cd01916 ACS_1 Acetyl-CoA synth 24.9 21 0.00046 40.9 -0.4 17 62-78 402-418 (731)
278 PRK10826 2-deoxyglucose-6-phos 24.7 2.2E+02 0.0048 26.8 6.6 71 192-265 97-172 (222)
279 COG3640 CooC CO dehydrogenase 24.6 6E+02 0.013 25.6 9.5 98 138-236 15-141 (255)
280 COG1453 Predicted oxidoreducta 24.5 29 0.00063 36.6 0.5 17 62-78 350-366 (391)
281 PF10387 DUF2442: Protein of u 24.4 1.3E+02 0.0028 24.0 4.2 28 261-288 1-28 (79)
282 PF14297 DUF4373: Domain of un 24.3 64 0.0014 26.5 2.4 61 395-456 11-74 (87)
283 PRK06769 hypothetical protein; 24.1 3.7E+02 0.0081 24.6 7.8 74 192-265 33-117 (173)
284 PRK00805 putative deoxyhypusin 23.2 1.9E+02 0.0042 30.1 6.2 75 135-225 59-133 (329)
285 PRK02301 putative deoxyhypusin 23.1 2.2E+02 0.0049 29.5 6.6 74 135-225 70-144 (316)
286 COG0437 HybA Fe-S-cluster-cont 22.8 23 0.0005 34.3 -0.6 21 59-79 14-34 (203)
287 TIGR01449 PGP_bact 2-phosphogl 22.6 4.3E+02 0.0092 24.3 8.0 71 192-264 90-164 (213)
288 TIGR01662 HAD-SF-IIIA HAD-supe 22.4 4.9E+02 0.011 22.1 8.8 74 190-265 28-110 (132)
289 PRK13984 putative oxidoreducta 22.0 46 0.001 36.9 1.5 25 59-86 82-106 (604)
290 PRK06259 succinate dehydrogena 22.0 38 0.00083 36.6 0.8 16 63-78 185-200 (486)
291 PRK13288 pyrophosphatase PpaX; 20.6 4.1E+02 0.009 24.7 7.5 70 193-264 88-161 (214)
292 PHA02132 hypothetical protein 20.4 47 0.001 26.9 0.8 21 42-66 30-50 (86)
293 COG1453 Predicted oxidoreducta 20.1 42 0.00091 35.5 0.6 14 64-78 294-307 (391)
294 TIGR02745 ccoG_rdxA_fixG cytoc 20.0 33 0.00071 37.1 -0.2 15 63-77 255-269 (434)
No 1
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=100.00 E-value=1.2e-53 Score=437.25 Aligned_cols=271 Identities=25% Similarity=0.407 Sum_probs=224.4
Q ss_pred CCCCCccCCcccccccccccccceecC----------------------CCccccccccccccCCCCCCCCCCCCcCCcc
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG----------------------DGMSRIEGLETVVHGRGRRKDSLDDTYLGVH 118 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~----------------------eG~~~c~~vCp~~~~r~~~~~~~~e~~~G~~ 118 (465)
+.+.|+|||+|.++||.. ++.+.. .+|+.|.++||.++.... ..++.+
T Consensus 10 ~~~~C~gCg~C~~~CP~~---aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~~~~-------~~i~~~ 79 (341)
T PRK09326 10 EYDVCTACGACEAVCPIG---AITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDGYIE-------DELANV 79 (341)
T ss_pred CcccCcChHHHHHhCCHh---hhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCccccc-------ccccch
Confidence 344899999999999963 333321 136789999998654321 234556
Q ss_pred ceEEEEEccCCccCCCChHHHHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcCCCCcccCchHHHHH
Q 012354 119 EELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLAL 198 (465)
Q Consensus 119 ~~~y~a~skd~r~~SsSGGi~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~GSKY~qS~~l~~l~e 198 (465)
+..|++++ +..|||||+||+|+.++|++|+||+|++++. ++.|+++|++++|+|||.+++||||++|++++.|++
T Consensus 80 ~~~yaa~~---~~~s~sGG~~t~l~~~~L~~g~Vd~V~~~~~--~~~~~~~~~~~~~~eel~~~~gSkY~~s~~~~~l~~ 154 (341)
T PRK09326 80 RKFFGARS---NIGGQDGGVTSAILKSLLKQGEIDCAVGITR--NEKWETELVLLTSAEDVERTRGTKYTYDSVLSALRE 154 (341)
T ss_pred hheeeecc---ccccccccHHHHHHHHHHHcCCccEEEEecc--CCCccceeEEECCHHHHHHhcCCcccCcchHHHHHH
Confidence 67898888 6799999999999999999999999998765 567999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEEecChHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHH-HHHHHH-hCCCCCceEEEEEEeCcEEEEEE
Q 012354 199 VEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGL-DKFLKA-ASSEPETVLHYEFMQDYKVHLKH 276 (465)
Q Consensus 199 i~~~~~kkVafvGtPCQI~aLr~l~~~l~~e~L~~Igl~C~Gv~S~~~~-~~~L~~-~~~~~~~I~~~~FR~~g~~~i~~ 276 (465)
+.+. ++|||||||||||+|||+|++++..++||+|||+|.|++.+... .+|++. .++++++|.+++||+ +++++++
T Consensus 155 ~~~~-~~kVa~vG~PCqi~alr~~~~~~~~~~l~~Igl~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~r~-~~~~~~~ 232 (341)
T PRK09326 155 PFEK-YDRIAVIGVPCQAHGARLIRENVNDKIVLIIGLLCMESFHHDVMLDKIIPEIMGVKIEDVVKMDFTK-GKFWAYT 232 (341)
T ss_pred HHhc-CCeEEEEcCchhHHHHHHHHhhcccceEEEEccccCCCCChhHHHHHHHHHhcCCCHHHeeEEEEEC-CEEEEEE
Confidence 8764 59999999999999999998766667999999999887777554 456754 467788999999995 4677778
Q ss_pred eCCcEEEeccccccccccccccCCCCccCcCCCCCCCcEEeeeCCCCCCCCCCCCCCcEEEEEeCHHHHHHHHHhhccce
Q 012354 277 LDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLE 356 (465)
Q Consensus 277 ~dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~r~ADITiGd~G~~~~~g~~~~~G~S~VlVrTekG~~Ll~~~~~~ie 356 (465)
.||++..+|+. .++.++|++|+.|.|+++++||||+||+|.| .|+|+|+|||+||++||+.+++.++
T Consensus 233 ~~g~~~~~~~~-----~~~~~~r~~C~~C~D~~~~~aDIsiGd~g~~--------~G~s~vivrt~kG~~l~~~a~~~~~ 299 (341)
T PRK09326 233 KDGEVHSVPIK-----DVAKYARNPCHHCCDYTSVFADISVGSVGAP--------DGWNSVLIRTDIGEKYFKMVRDELE 299 (341)
T ss_pred cCCcEEEeEHH-----HhhHhhcCCCccccccCCcccceeeeccCCC--------CceEEEEEeChHHHHHHHHHHHhcc
Confidence 89987766543 3456799999999999999999999998755 3688999999999999999998887
Q ss_pred eccCC
Q 012354 357 ITPTI 361 (465)
Q Consensus 357 ~~~~~ 361 (465)
+.+.+
T Consensus 300 ~~~~~ 304 (341)
T PRK09326 300 IMEDP 304 (341)
T ss_pred ccccC
Confidence 77664
No 2
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=100.00 E-value=7.2e-53 Score=419.34 Aligned_cols=233 Identities=28% Similarity=0.463 Sum_probs=205.7
Q ss_pred CCccceEEEEEccCC--ccCCCChHHHHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcCCCCcccCc
Q 012354 115 LGVHEELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPN 192 (465)
Q Consensus 115 ~G~~~~~y~a~skd~--r~~SsSGGi~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~GSKY~qS~~ 192 (465)
||+|..+|+||++|+ |.+|||||++|+|+.++||+|.|||||+++ ..+++|+++|++++|+|||.+++||||+||++
T Consensus 1 ~G~~~~~y~a~~~d~~ir~~sssGG~~tall~~lLe~g~IDgvv~~~-~~~~~~~~~~~~~~~~eel~~~~GSkY~~s~~ 79 (275)
T TIGR03289 1 LGPYKEIVSARSTDNEVLKKAQDGGIVSAILIYALEENIIDGAIVAG-PGDEPWKPEPLVATTPEEILKAAGTKYTVCPN 79 (275)
T ss_pred CCceeEEEEEEcCCccccccCCcHHHHHHHHHHHHHcCCccEEEEEe-cCCCCCceeEEEECCHHHHHHhcCCcccCCcc
Confidence 699999999999987 889999999999999999999999999965 45789999999999999999999999999999
Q ss_pred hHHHHHHHH-cCCCEEEEEecChHHHHHHHHHHh-----cCCCc-eEEEcccCCCCCCHHHHHHHHHH-hCCCCCceEEE
Q 012354 193 LNTLALVEA-AGVKRLLFCGVGCQVQALRSVEHH-----LNLEK-LYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHY 264 (465)
Q Consensus 193 l~~l~ei~~-~~~kkVafvGtPCQI~aLr~l~~~-----l~~e~-L~~Igl~C~Gv~S~~~~~~~L~~-~~~~~~~I~~~ 264 (465)
+..|+++.+ .++++||||||||||+|||+|+++ ...++ +|+|||+|||+||++.|.+||+. .++++++|.++
T Consensus 80 ~~~l~~~~~~~~~~~va~vGtPCqi~alr~l~~~~~~~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~g~~~~~v~~~ 159 (275)
T TIGR03289 80 LSVLKEAVREYGLEKIGTVGTPCQVMGLRKAQTYPVGVRNVVDKIALSIGIYCMENFPYESLKTFINDKCGVTMEQVTKM 159 (275)
T ss_pred HHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhccccccccccceEEEEeeeCCCCCCHHHHHHHHHHhcCCCHHHccEE
Confidence 999999853 456999999999999999999863 12367 59999999999999999999976 58889999999
Q ss_pred EEEeCcEEEEEEeCCcEEEeccccccccccccccCCCCccCcCCCCCCCcEEeeeCCCCCCCCCCCCCCcEEEEEeCHHH
Q 012354 265 EFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERG 344 (465)
Q Consensus 265 ~FR~~g~~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~r~ADITiGd~G~~~~~g~~~~~G~S~VlVrTekG 344 (465)
+||. |.+++.+.||+++.+|+... ..+.|++|+.|+|+++++||||+||+|.+. |+|+|+|||++|
T Consensus 160 ~~r~-g~~~v~~~dg~~~~~~~~~~-----~~~~r~~C~~C~D~~~~~ADIsvGd~~~~~--------G~s~VivrT~kG 225 (275)
T TIGR03289 160 DIGK-GKFWVYTTGGEVGKIPLKET-----HGYEQAGCHVCMDYVAELADISTGSVGSPD--------GWSTVIIRTDKG 225 (275)
T ss_pred EeEC-CcEEEEECCCcEEEEEhHHh-----hhhcCCCCccCCCCCCcccceeeeccCCCC--------CceEEEEECHHH
Confidence 9994 56778899999887765433 357899999999999999999999987663 588999999999
Q ss_pred HHHHHHhh--ccceeccCCC
Q 012354 345 KEMLSLVK--NLLEITPTIS 362 (465)
Q Consensus 345 ~~Ll~~~~--~~ie~~~~~~ 362 (465)
++||+.+. +.++..+.++
T Consensus 226 ~~ll~~a~~~g~ie~~~~~~ 245 (275)
T TIGR03289 226 ESIINKAVEAGILETKPIEE 245 (275)
T ss_pred HHHHHHHHHcCceeeccccc
Confidence 99999986 4678887664
No 3
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=9.8e-53 Score=423.66 Aligned_cols=266 Identities=33% Similarity=0.534 Sum_probs=229.0
Q ss_pred CCCccCCcccccccccccccceecCC-----------CccccccccccccCCCCCCCCCCCCcCCccceEEEEEccCC--
Q 012354 63 DHCSRCGLCDTYYIAHVKDACAFLGD-----------GMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTKP-- 129 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~~~~ai~f~~e-----------G~~~c~~vCp~~~~r~~~~~~~~e~~~G~~~~~y~a~skd~-- 129 (465)
++|++||+|+++||- ++.+..+ |++.|.++||.+. .|.|..+|.+++.+.
T Consensus 5 ~~c~~Cg~C~a~cp~----~i~~~~~~~~~~~~c~~~~~~~~~~~cp~~~-------------~~~y~~~~~~~~~~~~~ 67 (332)
T COG1035 5 GLCTGCGTCAAVCPY----AITERDEAPLLIEECMDNGHGTCLKVCPEVD-------------EGKYGEVYEARSTDSKL 67 (332)
T ss_pred cccccchhhHhhCCc----eEEEecccchhhhhhhcccchHHhhhCcccc-------------cccchheeeeeecchhh
Confidence 399999999999993 4555433 2345667777543 356788899999876
Q ss_pred ccCCCChHHHHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcCCCCcccCchHHHHHHH-HcCCCEEE
Q 012354 130 VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE-AAGVKRLL 208 (465)
Q Consensus 130 r~~SsSGGi~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~GSKY~qS~~l~~l~ei~-~~~~kkVa 208 (465)
+..+||||++|+|+.|+|++|.|||||+++ +.+++|+|+|++++|++||.+.+||||+.+|++++|+++. +.+.+|||
T Consensus 68 ~~~aqdGG~VT~il~yaLe~gliDgvv~v~-~~~~~~kp~p~va~t~eel~~tagsky~~~~~l~~L~ea~~~~g~~rva 146 (332)
T COG1035 68 RKGAQDGGVVTAILAYALEEGLIDGVVVVG-SGEEEWKPIPVVATTPEELLETAGSKYTISPNLSALKEAVRKYGLERVA 146 (332)
T ss_pred cccCCCcchHHHHHHHHHHcCCceEEEEeC-CCccccCCeeEEecChHHHHHhcCCcccCchhHHHHHHHHhhcCCceEE
Confidence 778999999999999999999999999988 5588999999999999999999999999999999999986 55556999
Q ss_pred EEecChHHHHHHHHHHhcC-C-----CceEEEcccCCCCCCHHHHHHHHHHh-CCCCCceEEEEEEeCcEEEEEEeCCcE
Q 012354 209 FCGVGCQVQALRSVEHHLN-L-----EKLYVLGTNCVDNGTREGLDKFLKAA-SSEPETVLHYEFMQDYKVHLKHLDGHI 281 (465)
Q Consensus 209 fvGtPCQI~aLr~l~~~l~-~-----e~L~~Igl~C~Gv~S~~~~~~~L~~~-~~~~~~I~~~~FR~~g~~~i~~~dG~~ 281 (465)
|||+||||+|+|+++++.. . +++|+|||||++++++..+++||+.. ++++.+|.+++++ +|+++++++||.+
T Consensus 147 vvG~PC~i~avrk~~~~~~~~~~~~~~i~~~iGlfC~e~f~y~~l~~~l~e~~gvd~~dV~k~di~-kGk~~v~~~dG~~ 225 (332)
T COG1035 147 VVGTPCQIQAVRKLQKFDLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLGVDPEDVEKMDIR-KGKFVVELKDGEV 225 (332)
T ss_pred EeecchHHHHHHHHhhccccccccccceEEEEeeecCCCcCHHHHHHHHHHHhCCCHHHeEEEEee-CceEEEEecCCcE
Confidence 9999999999999987533 2 25899999999999999999999985 8999999999987 8999999999987
Q ss_pred EEeccccccccccccccCCCCccCcCCCCCCCcEEeeeCCCCCCCCCCCCCCcEEEEEeCHHHHHHHHHhh--ccceecc
Q 012354 282 EEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLLEITP 359 (465)
Q Consensus 282 ~~~~y~~~~~~~l~~~~r~sC~~C~d~~~r~ADITiGd~G~~~~~g~~~~~G~S~VlVrTekG~~Ll~~~~--~~ie~~~ 359 (465)
..+ ++.+++.+.+++|+.|.|+++++|||++|+||+|+ | ||+|+|||++|+++|+.+. +.|+.++
T Consensus 226 ~~~-----~l~e~e~~~~~gC~~C~D~~a~~ADiSvGsvGsP~--G------w~tVlVRt~~g~~i~~~av~~g~le~k~ 292 (332)
T COG1035 226 KEI-----PLKETEEYGPEGCRVCTDFVAELADISVGSVGSPD--G------WSTVLVRTEKGEEILDGAVEAGLLEVKE 292 (332)
T ss_pred EEE-----EhhhhhcccCCCCeehhhccccccccccccccCCC--c------eeEEEEecchHHHHHHHHHhccceeeec
Confidence 654 45666778889999999999999999999999995 4 6799999999999999997 4565555
Q ss_pred C
Q 012354 360 T 360 (465)
Q Consensus 360 ~ 360 (465)
.
T Consensus 293 ~ 293 (332)
T COG1035 293 I 293 (332)
T ss_pred c
Confidence 4
No 4
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated
Probab=100.00 E-value=1.6e-51 Score=411.38 Aligned_cols=234 Identities=30% Similarity=0.499 Sum_probs=205.2
Q ss_pred cCCccceEEEEEccCC--ccCCCChHHHHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcCCCCcccC
Q 012354 114 YLGVHEELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSP 191 (465)
Q Consensus 114 ~~G~~~~~y~a~skd~--r~~SsSGGi~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~GSKY~qS~ 191 (465)
.||+|+.+|+||++|+ |.+|||||++|+|+.++|++|.|||||++.. .+++|+++|++++|+|||.+++||||+||+
T Consensus 2 ~~G~~~~~y~a~~~d~~ir~~sssGG~~tall~~lLe~g~VDgvv~~~~-~~~~~~~~~~~a~~~eel~~~~GSkY~~s~ 80 (282)
T PRK09325 2 PFGKYKEVVSARSTDKEILKKAQDGGIVTALLIYALEEGIIDGVIVAGD-GEEPWKPVPKVATTPEEILEAAGTKYTISP 80 (282)
T ss_pred CccchheeEEEecCCccccccCCcHHHHHHHHHHHHHcCCccEEEEecC-CCCCCCceeEEECCHHHHHHhcCCcccCCc
Confidence 5899999999999987 8899999999999999999999999999744 477899999999999999999999999999
Q ss_pred chHHHHHHHH-cCCCEEEEEecChHHHHHHHHHHh-cC----CCce-EEEcccCCCCCCHHHHHHHHHH-hCCCCCceEE
Q 012354 192 NLNTLALVEA-AGVKRLLFCGVGCQVQALRSVEHH-LN----LEKL-YVLGTNCVDNGTREGLDKFLKA-ASSEPETVLH 263 (465)
Q Consensus 192 ~l~~l~ei~~-~~~kkVafvGtPCQI~aLr~l~~~-l~----~e~L-~~Igl~C~Gv~S~~~~~~~L~~-~~~~~~~I~~ 263 (465)
+++.++++.+ .+.+|||||||||||+|||+|+++ ++ .+++ |+|||+|||+|+++.|++||+. ++.++++|.+
T Consensus 81 ~~~~~~~~l~~~~~~kva~VGtPCqI~alr~l~~~~~~~~~~~d~l~~~Igl~C~g~~~~~~~~~~l~~~~g~~~~~v~~ 160 (282)
T PRK09325 81 NVSVLKEAVREYGLDKVGIVGTPCQIQAVRKAQLYPVGMRHVPDKIALIVGIFCMENFPYEGLKTIVEDHCGVKMEDVKK 160 (282)
T ss_pred hHHHHHHHHHhcCCCeEEEEccChHHHHHHHHHhccccccccccceeEEEcccCCCCCCHHHHHHHHHHHhCCCHHHeeE
Confidence 9999998764 456999999999999999999753 11 2677 9999999999999999999998 6888899999
Q ss_pred EEEEeCcEEEEEEeCCcEEEeccccccccccccccCCCCccCcCCCCCCCcEEeeeCCCCCCCCCCCCCCcEEEEEeCHH
Q 012354 264 YEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNER 343 (465)
Q Consensus 264 ~~FR~~g~~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~r~ADITiGd~G~~~~~g~~~~~G~S~VlVrTek 343 (465)
++||+ +.+++.+.||+++.+|+ ..++.+.|++|+.|.|.++++||||+||+|.+. |+|+|+|||++
T Consensus 161 ~~~r~-g~~~v~~~~g~~~~~~~-----~~~~~~~r~~C~~C~d~~~~~ADIsvGd~~~~~--------G~s~vivrt~k 226 (282)
T PRK09325 161 MDIGK-GKFWVYTKRGDVKTIPL-----KETHKYEQPGCHVCTDYTAELADISTGSVGSPD--------GWSTVFVRTKK 226 (282)
T ss_pred EEEeC-CeEEEEEcCCcEEEeEH-----HHhhhhcCCCCcCCcCCCCCcccEeeeccCCCC--------CceEEEEEChH
Confidence 99995 45667778998876653 334567899999999999999999999987553 58899999999
Q ss_pred HHHHHHHhh--ccceeccCCC
Q 012354 344 GKEMLSLVK--NLLEITPTIS 362 (465)
Q Consensus 344 G~~Ll~~~~--~~ie~~~~~~ 362 (465)
|++||+.+. +.++..+.+.
T Consensus 227 G~~ll~~a~~~g~i~~~~~~~ 247 (282)
T PRK09325 227 GEEIFNKAVEAGLLETKPIEE 247 (282)
T ss_pred HHHHHHHHHHcCceEeccCcc
Confidence 999999986 4677777654
No 5
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=100.00 E-value=5.6e-34 Score=262.78 Aligned_cols=149 Identities=31% Similarity=0.517 Sum_probs=128.5
Q ss_pred cCCCEEEEEecChHHHHHHHHHHhcC---CCceEEEcccCCCCCCHHHHHHHHHH-hCCCCCceEEEEEEeCcEEEEEEe
Q 012354 202 AGVKRLLFCGVGCQVQALRSVEHHLN---LEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHL 277 (465)
Q Consensus 202 ~~~kkVafvGtPCQI~aLr~l~~~l~---~e~L~~Igl~C~Gv~S~~~~~~~L~~-~~~~~~~I~~~~FR~~g~~~i~~~ 277 (465)
++++|||||||||||+|||+|+++.. .+++|+|||+|||+||++.|++||+. ++.++++|.+++||+ ||+.+++.
T Consensus 2 ~~~~kV~~vG~PCqi~al~~~~~~~~~~~~~~~~~igl~C~g~~s~~~~~~~l~~~~~~~~~~v~~~~~r~-g~~~i~~~ 80 (161)
T PF04432_consen 2 QGGKKVAFVGTPCQIAALRKLLKRNYENRDEIVYTIGLFCHGVPSPKKLRKYLEEQLGIKPDDVKKFDFRD-GWFIITTK 80 (161)
T ss_pred CCCCEEEEEeccHHHHHHHHHHhhCcccCcceEEEEeEECCCCCCHHHHHHHHHHHhCCChhheeEEEEeC-CeEEEEEe
Confidence 45799999999999999999987522 24789999999999999999999998 589989999999996 88988888
Q ss_pred CCcEEEeccccccccccccccCCCCccCcCCCCCCCcEEeeeCCCCCCCCCCCCCCcEEEEEeCHHHHHHHHHhh--ccc
Q 012354 278 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLL 355 (465)
Q Consensus 278 dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~r~ADITiGd~G~~~~~g~~~~~G~S~VlVrTekG~~Ll~~~~--~~i 355 (465)
||++..+|+.+ ++.+.|++|+.|.|++++.||||+||||.+ +|+|+|+|||+||++||+.++ +.+
T Consensus 81 ~g~~~~~~~~~-----~~~~~r~~C~~C~d~~~~~aDIsiGd~~~~--------~G~S~vivrt~kG~~l~~~~~~~~~l 147 (161)
T PF04432_consen 81 DGKEKEIPLKE-----LGFFLRPSCYICPDFTPERADISIGDWGDP--------KGWSLVIVRTEKGEELLEEAKENGYL 147 (161)
T ss_pred CCCEEEEehHH-----hCCccCCccccCCCCCCCcCCEEEEeCCCC--------CceEEEEEECHHHHHHHHHHHHCCcE
Confidence 99877765443 356899999999999999999999997766 468899999999999999998 468
Q ss_pred eeccCCCCC
Q 012354 356 EITPTISSG 364 (465)
Q Consensus 356 e~~~~~~~g 364 (465)
++.+.+..+
T Consensus 148 e~~~~~~~~ 156 (161)
T PF04432_consen 148 ELKPIEPEK 156 (161)
T ss_pred EecCCChhh
Confidence 988887543
No 6
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=99.84 E-value=7.3e-21 Score=156.95 Aligned_cols=80 Identities=41% Similarity=0.588 Sum_probs=75.6
Q ss_pred ceEEEEEccCC--ccCCCChHHHHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcCCCCcccCchHHH
Q 012354 119 EELLYARKTKP--VEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL 196 (465)
Q Consensus 119 ~~~y~a~skd~--r~~SsSGGi~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~GSKY~qS~~l~~l 196 (465)
+++|+||++|+ |.+|||||++|+|+.++||+|.||+||+++..++++|+++|++++|+|||.+++||||++++++..|
T Consensus 1 ~~~y~a~s~d~~ir~~~~sGG~vTaLl~~lLe~g~Vd~vv~~~~~~~~~~~~~~~i~~~~eel~~~aGSkY~~~~~~~~L 80 (82)
T PF04422_consen 1 KEVYAARSTDEEIREKSQSGGVVTALLAYLLESGLVDGVVVVGRDDDDPWRPEPVIATSPEELLKAAGSKYSPSPVLSAL 80 (82)
T ss_pred CcEEEEEcCChhhcccCCcHHHHHHHHHHHHHcCCceEEEEEeecCCCCcceEEEEECCHHHHHHHcCCceeccchHHHh
Confidence 36899999998 9999999999999999999999999999997778899999999999999999999999999999988
Q ss_pred HH
Q 012354 197 AL 198 (465)
Q Consensus 197 ~e 198 (465)
+|
T Consensus 81 ke 82 (82)
T PF04422_consen 81 KE 82 (82)
T ss_pred cC
Confidence 74
No 7
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.06 E-value=0.00023 Score=55.14 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=23.6
Q ss_pred CCCCCCccCCcccccccccccccceecC-----------CCcccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~-----------eG~~~c~~vCp~ 99 (465)
++.++|.|||.|+.+||....+++.+.+ .||+.|..+||.
T Consensus 3 Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~~~~~v~~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 3 IDEDKCIGCGKCVRACPDGAIDAIEVDEGKKVPVNPDKCIGCGLCVKVCPV 53 (59)
T ss_dssp E-TTT----SCCCHHCCCCS-S-ECCTTTTSSECE-TT--S-SCCCCCSSS
T ss_pred ECcccccChhhHHhHcCccceeeEEecCCeeEEeccccCcCcCcccccCCC
Confidence 4566999999999999965445555443 258899999994
No 8
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=96.77 E-value=0.00046 Score=64.80 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=30.3
Q ss_pred CCCCCCCCccCCcccccccccccccceecC-----CC----------------cccccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG-----DG----------------MSRIEGLETV 99 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~~~~ai~f~~-----eG----------------~~~c~~vCp~ 99 (465)
.....+.|.||++|+++||. +||.|.. +| |+.|+++||.
T Consensus 50 ~~l~~~~CIgC~lCa~iCP~---~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt 109 (172)
T COG1143 50 HVLDRDKCIGCGLCANICPA---NAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPT 109 (172)
T ss_pred eeccccCCcchhHHHhhCCc---CceEEEEcccCCCCccccccceeccccccccCchhhhCch
Confidence 44456679999999999996 5676632 24 7899999996
No 9
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=96.35 E-value=0.0013 Score=48.93 Aligned_cols=40 Identities=20% Similarity=0.136 Sum_probs=15.5
Q ss_pred CCCCCCCccCCcccccccccccccceecC----------CCccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLET 98 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp 98 (465)
.++.+.|++||.|..+||.....+..... .+|+.|..+||
T Consensus 3 ~id~~~C~~C~~C~~~CP~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 3 VIDEDKCIGCGRCVKVCPADNAIAIDDGEKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp ---TT------TTGGG-TT-----EEE-SSSEEE-TTT--TTSHHHHH-T
T ss_pred ccCcccCcCCcChHHHccchhHHHhhccCCCeEeCcccccccChhhhhCc
Confidence 45677999999999999962122222221 13677788887
No 10
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.67 E-value=0.0022 Score=40.90 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=15.6
Q ss_pred CCCCCCccCCcccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~ 77 (465)
++.++|+|||.|..+||.
T Consensus 4 id~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 4 IDPDKCIGCGDCVRVCPE 21 (24)
T ss_pred EChhhCcChhHHHHhcch
Confidence 455699999999999995
No 11
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.50 E-value=0.0039 Score=38.91 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=15.6
Q ss_pred CCCCCCCccCCccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYI 76 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp 76 (465)
+++.+.|+|||+|...||
T Consensus 4 ~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 4 VIDLERCIGCGACEVACP 21 (22)
T ss_pred EEccccccCchhHHHhhC
Confidence 456679999999999997
No 12
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.11 E-value=0.0085 Score=63.59 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=38.7
Q ss_pred CCCCCCccCCcccccccccccccceecC-------------CCcccccccccc-ccCCCCCCCCCCCCcCCccceEEEEE
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG-------------DGMSRIEGLETV-VHGRGRRKDSLDDTYLGVHEELLYAR 125 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~-------------eG~~~c~~vCp~-~~~r~~~~~~~~e~~~G~~~~~y~a~ 125 (465)
.+.+.|++||.|..+||.....++.+.. .||+.|.++||. .--+... .. ....|.+|
T Consensus 339 ~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~------~~---~~~~~~~~ 409 (420)
T PRK08318 339 IDQDKCIGCGRCYIACEDTSHQAIEWDEDGTRTPEVIEEECVGCNLCAHVCPVEGCITMGE------VK---FGKPYANW 409 (420)
T ss_pred ECHHHCCCCCcccccCCCcchhheeeccCCCceEEechhhCcccchHHhhCCCCCCEEEec------cC---CCcccccc
Confidence 4567899999999999953223454421 258899999996 2211111 00 12458999
Q ss_pred ccCC
Q 012354 126 KTKP 129 (465)
Q Consensus 126 skd~ 129 (465)
++++
T Consensus 410 ~~~~ 413 (420)
T PRK08318 410 TTHP 413 (420)
T ss_pred cCCC
Confidence 9876
No 13
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=94.81 E-value=0.0079 Score=38.20 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.1
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
+.+.|++||.|..+||.
T Consensus 4 d~~~C~~Cg~C~~~CP~ 20 (24)
T PF00037_consen 4 DPDKCIGCGRCVEACPF 20 (24)
T ss_dssp ETTTSSS-THHHHHSTT
T ss_pred chHHCCCcchhhhhccc
Confidence 45689999999999996
No 14
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=94.65 E-value=0.0071 Score=45.05 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=11.6
Q ss_pred CCccCCcccccccccccccceec
Q 012354 64 HCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 64 lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.|+|||.|+.+||. .++.+.
T Consensus 1 ~C~~C~~C~~~CP~---~~i~~~ 20 (52)
T PF12838_consen 1 KCIGCGACVEACPT---GAIRLD 20 (52)
T ss_dssp C-SS--HHHHH-TT---HHCEEE
T ss_pred CCCCcCchHHhcCc---cccCcc
Confidence 49999999999995 455553
No 15
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=94.60 E-value=0.01 Score=44.38 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=10.9
Q ss_pred CCccCCccccccccc
Q 012354 64 HCSRCGLCDTYYIAH 78 (465)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (465)
.|+|||.|..+||.+
T Consensus 1 kCi~Cg~C~~~CP~~ 15 (55)
T PF13187_consen 1 KCIGCGRCVEACPVG 15 (55)
T ss_dssp C--TTTHHHHHSTTT
T ss_pred CCCCcchHHHHCCcc
Confidence 489999999999963
No 16
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=94.56 E-value=0.014 Score=48.97 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=35.3
Q ss_pred hhhhhhhhccccccCCCCCCCCCCCCccCCcccccccccccccceecC------------CCcccccccccc
Q 012354 40 VKLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLG------------DGMSRIEGLETV 99 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~------------eG~~~c~~vCp~ 99 (465)
.-....||----+++-. .|++|+.|.-.||-. +|...+ -||+.|.++||.
T Consensus 19 ~~kTg~Wrv~rPv~d~~-------kCi~C~~C~~yCPe~---~i~~~~~~~~~~idYdyCKGCGICa~vCP~ 80 (91)
T COG1144 19 ANKTGSWRVFRPVVDED-------KCINCKLCWLYCPEP---AILEEEGGYKVRIDYDYCKGCGICANVCPV 80 (91)
T ss_pred ccccceeEEEeeEEccc-------ccccCceeEEECCch---heeeccCCccceeEcccccCceechhhCCh
Confidence 34567898765555544 899999999999953 333222 268889999996
No 17
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=94.41 E-value=0.013 Score=51.52 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=27.5
Q ss_pred CCCCCCCCccCCcccccccccccccceec---------C---CCcccccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFL---------G---DGMSRIEGLETV 99 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~~~~ai~f~---------~---eG~~~c~~vCp~ 99 (465)
.....+.|++||.|..+||.. ++.+. . .+|+.|..+||.
T Consensus 37 i~i~~~~Ci~C~~C~~~CP~~---ai~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 87 (120)
T PRK08348 37 ILYDVDKCVGCRMCVTVCPAG---VFVYLPEIRKVALWTGRCVFCGQCVDVCPT 87 (120)
T ss_pred EEECcccCcCcccHHHHCCcc---ceEccccccceEecCCcCcChhhhHHhCCc
Confidence 334556899999999999963 33332 1 147788899995
No 18
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=94.23 E-value=0.02 Score=44.28 Aligned_cols=22 Identities=41% Similarity=0.780 Sum_probs=14.2
Q ss_pred CCCCccCCccccccccccccccee
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
.+.|.|||+|..+||. ..||.|
T Consensus 38 ~~~C~GCg~C~~~CPv--~~AI~m 59 (59)
T PF14697_consen 38 PDKCIGCGLCVKVCPV--KDAITM 59 (59)
T ss_dssp -TT--S-SCCCCCSSS--TTSEEE
T ss_pred cccCcCcCcccccCCC--ccCCCC
Confidence 4589999999999993 157765
No 19
>PRK06273 ferredoxin; Provisional
Probab=94.14 E-value=0.02 Score=53.48 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=14.9
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
..+.|.+||.|..+||.
T Consensus 47 d~~~CigCg~C~~aCP~ 63 (165)
T PRK06273 47 FEELCIGCGGCANVCPT 63 (165)
T ss_pred CchhCcChhHHHHhcCc
Confidence 44589999999999996
No 20
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=94.08 E-value=0.021 Score=45.89 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=31.7
Q ss_pred hhhhhhhccccccCCCCCCCCCCCCccCCcccccccccccccceecCC-----------Ccccccccccc
Q 012354 41 KLREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGD-----------GMSRIEGLETV 99 (465)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~e-----------G~~~c~~vCp~ 99 (465)
-...+|......++++ .|.+||.|..+||.. ++.+... +|+.|..+||.
T Consensus 10 ~~~~~~~~~~~~i~~~-------~C~~C~~C~~~Cp~~---ai~~~~~~~~~i~~~~C~~C~~C~~~CP~ 69 (78)
T TIGR02179 10 NKTGDWRVFKPVVDKE-------KCIKCKNCWLYCPEG---AIQEDEGGFVGIDYDYCKGCGICANVCPV 69 (78)
T ss_pred ccccCceeeEEEEcCC-------cCcChhHHHhhcCcc---ceEecCCCcEEecCccCcCccchhhhCCc
Confidence 3456675444455555 899999999999953 4444321 35667777774
No 21
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=93.89 E-value=0.021 Score=53.98 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=27.0
Q ss_pred CCCCCCCccCCcccccccccccccceecC----------------CCcccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG----------------DGMSRIEGLETV 99 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~----------------eG~~~c~~vCp~ 99 (465)
..+.+.|++||+|..+||. .++.+.. .+|+.|..+||.
T Consensus 34 ~~d~~~Ci~Cg~Cv~aCP~---~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt 87 (181)
T PRK08222 34 DLMPSQCIACGACTCACPA---NALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPT 87 (181)
T ss_pred EeChhhCcchhHHHHhCCc---cceEcccccccCccceeeccCcCcCCCCcccccCc
Confidence 3445589999999999996 3444321 136788899985
No 22
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.75 E-value=0.093 Score=52.69 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=49.9
Q ss_pred CCCCCCccCCccccccccccccccee--------cC---CCccccccccccccCCCCCCCCCCCCcCCccceEEEEEccC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAF--------LG---DGMSRIEGLETVVHGRGRRKDSLDDTYLGVHEELLYARKTK 128 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f--------~~---eG~~~c~~vCp~~~~r~~~~~~~~e~~~G~~~~~y~a~skd 128 (465)
+..+.|..||.|..+|+- .|+.+ ++ +||+.|.-+||..--... +...| ++|.+++..
T Consensus 66 i~~e~C~~CG~C~~vC~f---~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~------~~~~G---~i~~~k~~~ 133 (284)
T COG1149 66 IDPEKCIRCGKCAEVCRF---GAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEE------PVVIG---KIYESKTDY 133 (284)
T ss_pred cChhhccccCcHHHhCCC---CeEEEcCCCceecCcccccCcccceeeCCCcccccc------cceee---EEEEEEcCC
Confidence 344479999999999996 46643 22 589999999996421111 11112 223333222
Q ss_pred ---------CccCCCChHHHHHHHHHHHHc
Q 012354 129 ---------PVEGAQWTGIVTTIAIEMLKT 149 (465)
Q Consensus 129 ---------~r~~SsSGGi~TaLa~~lLe~ 149 (465)
..-...||.+++++-+++.|.
T Consensus 134 g~~li~g~l~vGe~~s~~lV~~~kk~a~E~ 163 (284)
T COG1149 134 GFPLISGRLNVGEEESGKLVTALKKHAKEL 163 (284)
T ss_pred CceeEEeeccCCccccchHHHHHHHhhhhh
Confidence 133567999999999999886
No 23
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=93.67 E-value=0.034 Score=32.53 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=13.5
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
+.|.+|+.|..+||.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 479999999999994
No 24
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=93.66 E-value=0.014 Score=61.18 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=16.0
Q ss_pred CCCCCCccCCccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~ 78 (465)
.+.+.|.+||.|..+||.+
T Consensus 4 id~~kCi~Cg~Cv~~CP~~ 22 (374)
T TIGR02512 4 RDMSKCIGCGRCVRACTNV 22 (374)
T ss_pred echhhCCcChHhhhhCCHh
Confidence 4556899999999999964
No 25
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=93.65 E-value=0.03 Score=47.94 Aligned_cols=21 Identities=19% Similarity=0.581 Sum_probs=17.1
Q ss_pred CCCCCCCCccCCccccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~ 78 (465)
...+.+.|+|||.|..+||..
T Consensus 11 v~id~~~Ci~C~~Cv~aCP~~ 31 (103)
T PRK09626 11 VWVDESRCKACDICVSVCPAG 31 (103)
T ss_pred eEECcccccCCcchhhhcChh
Confidence 445667899999999999963
No 26
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=93.58 E-value=0.022 Score=47.22 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=15.7
Q ss_pred CCCCCCccCCccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~ 78 (465)
++.+.|++||.|..+||..
T Consensus 18 i~~~~Ci~C~~Cv~~CP~~ 36 (91)
T TIGR02936 18 IDQEKCIGCGRCYKVCGRD 36 (91)
T ss_pred ECHhHCCCcchHHHHcChh
Confidence 3455899999999999953
No 27
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=93.52 E-value=0.037 Score=51.27 Aligned_cols=18 Identities=28% Similarity=0.728 Sum_probs=15.1
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
..+.|++||.|..+||..
T Consensus 56 ~~~~Ci~C~~C~~~CP~~ 73 (164)
T PRK05888 56 GEERCIACKLCAAICPAD 73 (164)
T ss_pred CCccCCcccChHHHcCcc
Confidence 345899999999999953
No 28
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=93.05 E-value=0.034 Score=52.34 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=26.7
Q ss_pred CCCCCCCccCCcccccccccccccceecC----------------CCcccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG----------------DGMSRIEGLETV 99 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~----------------eG~~~c~~vCp~ 99 (465)
..+.+.|++||+|..+||.+ ++.+.. .+|+.|..+||.
T Consensus 34 ~~d~~~C~~C~~Cv~~CP~~---ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~ 87 (180)
T PRK12387 34 EYNPQQCIGCAACVNACPSN---ALTVETDLATGELAWEFNLGRCIFCGRCEEVCPT 87 (180)
T ss_pred EEChhhCcChhHHHHhcCcc---CeEeeccccCCcccceeccccCcCccchhhhcCc
Confidence 44566899999999999963 333321 136788888884
No 29
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=92.74 E-value=0.028 Score=50.56 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=33.2
Q ss_pred hhhhhhccccccCCCCCCCCCCCCccCCccccccccccccccee--------cC---CCccccccccccc
Q 012354 42 LREDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAF--------LG---DGMSRIEGLETVV 100 (465)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f--------~~---eG~~~c~~vCp~~ 100 (465)
.-.+|+..-..+++. .|++||.|..+||.. ++.. +. .||+.|.++||..
T Consensus 45 ~~~~~~~~~p~~d~~-------~Ci~C~~C~~~CP~~---ai~~~~~~~~~i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 45 SVAHWRVEKPVHNNE-------ICINCFNCWVYCPDA---AILSRDKKLKGVDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred ccCCeeeeeEEEehh-------HCcChhhHHHhCCHh---heEecCCceEEeCcCcCcChhHHHHHCCcC
Confidence 345677654444444 899999999999953 3322 21 2578899999964
No 30
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=92.58 E-value=0.048 Score=45.09 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCCCCccCCcccccccccccccceec------------CC---Cccccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFL------------GD---GMSRIEGLETVV 100 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~------------~e---G~~~c~~vCp~~ 100 (465)
..+.|++||+|..+||.. ++.+. .+ +|+.|.++||..
T Consensus 27 ~~~~Ci~Cg~C~~~CP~~---ai~~~~~~~~~~~~~~~~~~C~~C~~C~~~Cp~~ 78 (99)
T COG1145 27 DAEKCIGCGLCVKVCPTG---AIELIEEGLLLPEVVIDPDLCVLCGACLKVCPVD 78 (99)
T ss_pred CccccCCCCCchhhCCHH---HhhcccccCccceEEEccccCccccchHhhCCcC
Confidence 344699999999999963 44431 11 367888999964
No 31
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=92.30 E-value=0.051 Score=50.64 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=16.1
Q ss_pred CCCCCCccCCccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~ 78 (465)
...+.|++||+|..+||..
T Consensus 56 ~~~~~Ci~Cg~C~~aCP~~ 74 (167)
T CHL00014 56 FEFDKCIACEVCVRVCPID 74 (167)
T ss_pred eccccCCCcCcHHHhCCCC
Confidence 4566899999999999964
No 32
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=92.27 E-value=0.056 Score=46.54 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=25.1
Q ss_pred CCCCCccCCcccccccccccccceecC-----------CCcccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~-----------eG~~~c~~vCp~ 99 (465)
..+.|.+||.|..+||.. ++.+.. .+|+.|.+.||.
T Consensus 49 ~~~~Ci~C~~C~~~CP~~---ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~ 95 (105)
T PRK09623 49 DESKCVKCYICWKFCPEP---AIYIKEDGYVAIDYDYCKGCGICANECPT 95 (105)
T ss_pred CcccCccccchhhhCCHh---heEecCCCcEEeCchhCcCcchhhhhcCc
Confidence 344899999999999953 343322 146778888885
No 33
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=92.19 E-value=0.047 Score=47.15 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=25.6
Q ss_pred CCCCCccCCcccccccccccccceecCC-----------Ccccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLGD-----------GMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~e-----------G~~~c~~vCp~ 99 (465)
+.+.|.+|+.|..+||.. ++.+.++ ||+.|.++||.
T Consensus 49 d~~~Ci~C~~C~~~CP~~---ai~~~~~~~~~id~~~C~~Cg~Cv~~CP~ 95 (105)
T PRK09624 49 NRDKCVRCYLCYIYCPEP---AIYLDEEGYPVFDYDYCKGCGICANECPT 95 (105)
T ss_pred ChhHCcChhhHHhhCCHh---hEEecCCCcEEECchhCCCcCchhhhcCc
Confidence 445899999999999953 3443322 46778888884
No 34
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=92.19 E-value=0.059 Score=54.17 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=28.9
Q ss_pred CCCCCCCCCccCCccccccccccccccee------------cC---CCcccccccccc
Q 012354 57 GTYPAKDHCSRCGLCDTYYIAHVKDACAF------------LG---DGMSRIEGLETV 99 (465)
Q Consensus 57 ~~~~~k~lCtGCGaC~siCp~~~~~ai~f------------~~---eG~~~c~~vCp~ 99 (465)
....+.++|++||.|..+||.. ++.+ +. .+|+.|..+||.
T Consensus 42 ~~~~~~~~C~~C~~C~~~Cp~~---a~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 96 (295)
T TIGR02494 42 ELLFKENRCLGCGKCVEVCPAG---TARLSELADGRNRIIIRREKCTHCGKCTEACPS 96 (295)
T ss_pred eEEEccccCCCCchhhhhCccc---ccccccccCCCcceeechhhcCchhHhhccCcH
Confidence 3455666999999999999963 3331 11 257889999995
No 35
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=91.50 E-value=0.069 Score=51.01 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=28.8
Q ss_pred CCCCCCCCccCCcccccccccccccceecC-----------CCcccccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~~~~ai~f~~-----------eG~~~c~~vCp~ 99 (465)
.+.+.+.|.+||.|..+||. .++.+.+ .+|+.|.++||.
T Consensus 109 ~~id~~~Ci~Cg~Cv~aCp~---~ai~~~~~~~~~v~~~~C~~Cg~Cv~vCP~ 158 (191)
T PRK05113 109 AFIDEDNCIGCTKCIQACPV---DAIVGATKAMHTVISDLCTGCDLCVAPCPT 158 (191)
T ss_pred eEEeCCcCCCCChhhhhCCH---hhhecccCCceeecCCcCCchHHHHHHcCc
Confidence 44556689999999999995 3444432 247899999996
No 36
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=91.48 E-value=0.077 Score=50.29 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.4
Q ss_pred CCCCCCCccCCccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~ 78 (465)
....+.|++||+|..+||..
T Consensus 58 ~~~~~kCi~Cg~C~~aCP~~ 77 (183)
T TIGR00403 58 HFEFDKCIACEVCVRVCPIN 77 (183)
T ss_pred EeCcccCcCcCChhhhCCCC
Confidence 34556899999999999964
No 37
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=91.27 E-value=0.077 Score=54.24 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCCCCCccCCcccccccccccccceecC----------CCcccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
.+.+.|.+||.|..+||.+...++.+.+ .+|+.|.++||.
T Consensus 166 ~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~ 215 (314)
T TIGR02912 166 YDADRCIGCGACVKVCKKKAVGALSFENYKVVRDHSKCIGCGECVLKCPT 215 (314)
T ss_pred eeCccCCcchHHHHhcChhhcCceeccCCeEEeCCCcCcCcchhhhhCCH
Confidence 3567899999999999964333444422 258889999996
No 38
>PRK06991 ferredoxin; Provisional
Probab=91.18 E-value=0.077 Score=53.39 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=27.4
Q ss_pred CCCCCCccCCcccccccccccccceecC-----------CCcccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~-----------eG~~~c~~vCp~ 99 (465)
++.+.|++||.|..+||.. +|.+.. .||+.|..+||.
T Consensus 82 id~~~CigCg~Cv~aCP~~---AI~~~~~~~~~v~~~~CigCg~Cv~vCP~ 129 (270)
T PRK06991 82 IDEQLCIGCTLCMQACPVD---AIVGAPKQMHTVLADLCTGCDLCVPPCPV 129 (270)
T ss_pred EccccCCCCcHHHHhCCHh---heecccccceeeCHhhCCCchHHHhhCCc
Confidence 3456899999999999953 333321 358899999996
No 39
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=91.05 E-value=0.098 Score=53.37 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=15.2
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
+.+.|++|+.|..+||..
T Consensus 245 d~~~Ci~C~~C~~~CP~~ 262 (312)
T PRK14028 245 DHSKCIMCRKCWLYCPDD 262 (312)
T ss_pred CcccCcCcccccccCChh
Confidence 445899999999999964
No 40
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=91.04 E-value=0.093 Score=49.04 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=26.4
Q ss_pred ccccCCCCCCCCCCCCccCCcccccccccccccceecC
Q 012354 50 SKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 50 ~~~~~~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
|...+-|......+.|.|||.|..+||- .+|.|+.
T Consensus 69 AI~~~~~~v~V~~ekCiGC~~C~~aCPf---Gai~~~~ 103 (165)
T COG1142 69 AITRDDGAVQVDEEKCIGCKLCVVACPF---GAITMVS 103 (165)
T ss_pred heeecCCceEEchhhccCcchhhhcCCc---ceEEEEe
Confidence 4444566777788899999999999994 5666654
No 41
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=90.95 E-value=0.064 Score=30.42 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=12.0
Q ss_pred CccCCcccccccc
Q 012354 65 CSRCGLCDTYYIA 77 (465)
Q Consensus 65 CtGCGaC~siCp~ 77 (465)
|++||.|..+||.
T Consensus 1 C~~C~~C~~~Cp~ 13 (15)
T PF12798_consen 1 CTGCGACVEVCPT 13 (15)
T ss_pred CCCchHHHHHhcC
Confidence 8899999999995
No 42
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=90.82 E-value=0.1 Score=56.29 Aligned_cols=19 Identities=32% Similarity=0.833 Sum_probs=16.5
Q ss_pred CCCCCCCCccCCcccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~ 77 (465)
+|.+ +.|+|||+|..+||.
T Consensus 220 ryVd-d~CtgCg~C~~vCPv 238 (622)
T COG1148 220 RYVD-DKCTGCGACSEVCPV 238 (622)
T ss_pred cccc-ccccccccccccCCc
Confidence 4666 799999999999996
No 43
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=90.80 E-value=0.11 Score=45.53 Aligned_cols=15 Identities=33% Similarity=0.809 Sum_probs=13.9
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
+.|++||.|..+||.
T Consensus 43 ~~Ci~C~~C~~~CP~ 57 (122)
T TIGR01971 43 EKCIGCTLCAAVCPA 57 (122)
T ss_pred CcCcCcchhhhhcCH
Confidence 689999999999994
No 44
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=90.66 E-value=0.041 Score=47.08 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=20.8
Q ss_pred CCCCCCCCCCccCCcccccccccccccceecCC
Q 012354 56 GGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 56 ~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~e 88 (465)
|-..++.++|.|||.|...||- .++.|+.+
T Consensus 33 G~V~id~~~CigC~~C~~aCP~---~ai~~~~~ 62 (98)
T PF13247_consen 33 GIVVIDEDKCIGCGYCVEACPY---GAIRFDPD 62 (98)
T ss_dssp S-EEE-TTTCCTHHHHHHH-TT---S-EEEETT
T ss_pred CeEEechhhccCchhhhhhhcc---Ccceeecc
Confidence 5566677799999999999995 56777653
No 45
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=90.54 E-value=0.095 Score=47.25 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=28.0
Q ss_pred CCCCCCCCccCC-----cccccccccccccceecC-------------CCcccccccccc
Q 012354 58 TYPAKDHCSRCG-----LCDTYYIAHVKDACAFLG-------------DGMSRIEGLETV 99 (465)
Q Consensus 58 ~~~~k~lCtGCG-----aC~siCp~~~~~ai~f~~-------------eG~~~c~~vCp~ 99 (465)
+++..+.|+||| .|..+||.. ++.+.. .||+.|.++||.
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~---ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~ 59 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPND---LMHLDTEIMKAYNIEPDMCWECYSCVKACPQ 59 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCcc---ceEecCCCceeeecCchhCccHHHHHHhCCc
Confidence 355667899999 999999963 333221 157788999995
No 46
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=90.52 E-value=0.097 Score=40.77 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=16.9
Q ss_pred CCccCCcccccccccccccceec
Q 012354 64 HCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 64 lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.|..||.|+.+||. .||.+.
T Consensus 1 ~C~~C~~C~~~CP~---~AI~~~ 20 (67)
T PF13484_consen 1 FCITCGKCAEACPT---GAISGE 20 (67)
T ss_pred CCcchhHHHHhCcH---hhccCC
Confidence 49999999999996 577765
No 47
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=90.47 E-value=0.42 Score=52.36 Aligned_cols=93 Identities=24% Similarity=0.263 Sum_probs=52.9
Q ss_pred CCCccCCcccccccccc--cccceecCC--------------Ccccccccccccc-----------------------CC
Q 012354 63 DHCSRCGLCDTYYIAHV--KDACAFLGD--------------GMSRIEGLETVVH-----------------------GR 103 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~~--~~ai~f~~e--------------G~~~c~~vCp~~~-----------------------~r 103 (465)
..|++||.|.-.||... .+|+.+-.+ ||.+|+++||..- ||
T Consensus 400 ~kc~~cG~C~~~CP~~l~i~eam~~A~~Gd~~~l~~l~d~C~~C~rCEq~Cpk~ipi~nm~~~a~~~~~~~ek~k~R~GR 479 (772)
T COG1152 400 RKCTYCGNCMRACPNELDIPEAMEYAAKGDFSKLEDLHDVCIGCGRCEQVCPKNIPILNMIEKAAQKRIKEEKGKVRAGR 479 (772)
T ss_pred HhcccccchhccCCcccchHHHHHHhhcCChHHHHHHHHHhhhhhhhhhhCcccCchhhHHHHHHHHhhhhhhcceeccC
Confidence 46999999999999532 234444333 4899999999421 11
Q ss_pred CCCCC-----CCCCCcCCccceEEEEEccCCccCCCChHHHHHHHHHHHHcCCeeEEEEEe
Q 012354 104 GRRKD-----SLDDTYLGVHEELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQ 159 (465)
Q Consensus 104 ~~~~~-----~~~e~~~G~~~~~y~a~skd~r~~SsSGGi~TaLa~~lLe~G~VdgVV~~~ 159 (465)
..-.+ ..-...+|....+.+.-..-. ....+-=+..|++.+|+++.+ ||++|
T Consensus 480 Gpi~D~eIR~vG~PiV~G~IPGIia~vgC~n--yp~g~k~v~~iaeefl~Rnyi--VvttG 536 (772)
T COG1152 480 GPIPDVEIRNVGVPIVMGTIPGIIAVIGCPN--YPAGTKDVYKIAEEFLKRNYI--VVTTG 536 (772)
T ss_pred CCCchHHHhhcCCceeecCCCeEEEEecCCC--CCcchhhHHHHHHHHHHcCeE--EEecc
Confidence 00000 011224455555444333211 122344578899999999987 55544
No 48
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=90.28 E-value=0.15 Score=42.87 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=26.5
Q ss_pred ccccCCCCCC--CCCCCCccCCcccccccccccccceecCC
Q 012354 50 SKPIPPGGTY--PAKDHCSRCGLCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 50 ~~~~~~~~~~--~~k~lCtGCGaC~siCp~~~~~ai~f~~e 88 (465)
+.-...|... ++-+.|-|||.|+++||. +||.|..|
T Consensus 51 ~i~~~~~~~~~~idYdyCKGCGICa~vCP~---kaI~Mv~E 88 (91)
T COG1144 51 AILEEEGGYKVRIDYDYCKGCGICANVCPV---KAIEMVRE 88 (91)
T ss_pred heeeccCCccceeEcccccCceechhhCCh---hheEeEee
Confidence 3444445433 688999999999999996 68887643
No 49
>CHL00065 psaC photosystem I subunit VII
Probab=90.24 E-value=0.12 Score=42.19 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.1
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
..+.|++||.|..+||.+
T Consensus 7 ~~~~Ci~Cg~C~~~CP~~ 24 (81)
T CHL00065 7 IYDTCIGCTQCVRACPTD 24 (81)
T ss_pred ccccCCChhHHHHHCCcc
Confidence 455799999999999954
No 50
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=90.19 E-value=0.14 Score=51.48 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=25.7
Q ss_pred cccccCCCCCCC-CCCCCccCCcccccccccccccceecC
Q 012354 49 RSKPIPPGGTYP-AKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 49 ~~~~~~~~~~~~-~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
.|....||+.+. ...+|.|||+|.-+||. .||.+.+
T Consensus 84 ~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~---~AI~~~~ 120 (284)
T COG1149 84 GAIVVLPGGKPVLNPDLCEGCGACSIVCPE---PAIEEEP 120 (284)
T ss_pred CeEEEcCCCceecCcccccCcccceeeCCC---ccccccc
Confidence 444444554443 47899999999999995 4777754
No 51
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=89.97 E-value=0.14 Score=61.11 Aligned_cols=43 Identities=14% Similarity=0.320 Sum_probs=27.5
Q ss_pred hhhhhh----hHhHHHHHHhhcchhhhhhcCchHHHHHHHhhccCchhhhh
Q 012354 415 YSLDYH----TIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQM 461 (465)
Q Consensus 415 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~ 461 (465)
+.+|++ -++.||..-.+| +++.+.-|+.+.+++++- .-.||+|
T Consensus 1110 ~~l~~~~~~~~~~~~l~~~~r~--~~l~~~~p~~~~~~~~~~--~~~~~~~ 1156 (1165)
T TIGR02176 1110 FQLDSKEPDSSVAEFLNGEVRF--ASLKKSFPDDAERLFNKA--AHEAKRR 1156 (1165)
T ss_pred eeecCCCCCcCHHHHHHhchHH--HHhcccChHHHHHHHHHH--HHHHHHH
Confidence 555554 567777777777 367777788888777763 3344444
No 52
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=89.76 E-value=0.12 Score=55.65 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=35.8
Q ss_pred hccccccCCCCCCCCCCCCccCCcccccccccccccceecC--------CCcccccccccc
Q 012354 47 RKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLG--------DGMSRIEGLETV 99 (465)
Q Consensus 47 ~~~~~~~~~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~--------eG~~~c~~vCp~ 99 (465)
...+..++|=-...+.++|+|||.|.. ||- .|+..+. .||+.|...||.
T Consensus 545 ~~g~~~~~~~~a~vde~~C~gC~~C~~-Cpf---~ais~~ka~v~~~~C~gCG~C~~aCp~ 601 (622)
T COG1148 545 GRGEVELEPFVATVDEDKCTGCGICAE-CPF---GAISVDKAEVNPLRCKGCGICSAACPS 601 (622)
T ss_pred hcCceeecccccccchhhhcCCcceee-CCC---CceeccccccChhhhCcccchhhhCCc
Confidence 344555666666778889999999999 994 3444432 378999999995
No 53
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=89.60 E-value=0.21 Score=42.59 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=25.9
Q ss_pred CCCCCccCCcccccccccccccceecC-------------CCccccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG-------------DGMSRIEGLETVV 100 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~-------------eG~~~c~~vCp~~ 100 (465)
..+.|.+|+.|..+||.+ ++.+.. .+|+.|..+||..
T Consensus 32 ~~~~C~~C~~C~~~CP~~---~i~~~~~g~~~~~i~~~~C~~Cg~C~~~CP~~ 81 (101)
T TIGR00402 32 FSAVCTRCGECASACENN---ILQLGQQGQPTVEFDNAECDFCGKCAEACPTN 81 (101)
T ss_pred CcCcCcChhHHHHHcCcc---cceeccCCceeeEecCccCcCccChhhHCCcc
Confidence 345799999999999963 233321 1367888999963
No 54
>PLN00071 photosystem I subunit VII; Provisional
Probab=89.45 E-value=0.13 Score=41.79 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=14.9
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
..+.|.+||+|..+||.+
T Consensus 7 ~~~~C~~C~~C~~~CP~~ 24 (81)
T PLN00071 7 IYDTCIGCTQCVRACPTD 24 (81)
T ss_pred cCCcCcChhHHHHHCCcc
Confidence 345899999999999953
No 55
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=89.30 E-value=0.16 Score=50.87 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=26.5
Q ss_pred CCCCCCccCCccccccccccccc--c----e---ecC---CCcccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDA--C----A---FLG---DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~a--i----~---f~~---eG~~~c~~vCp~ 99 (465)
.+.+.|++|+.|..+||...... . . .+. .+|+.|.++||.
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 256 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSE 256 (271)
T ss_pred CCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCc
Confidence 45668999999999999531111 0 0 111 247889999995
No 56
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=89.17 E-value=0.16 Score=54.52 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=26.1
Q ss_pred CCCCccCCcccccccccccccceecC------CCccccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFLG------DGMSRIEGLETVV 100 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~~------eG~~~c~~vCp~~ 100 (465)
.+.|++|+.|..+||.+ +...+ .+|+.|.+.||..
T Consensus 230 ~~~Ci~C~~Cv~vCP~g----i~~~~~~~~~Ci~Cg~CidaCp~a 270 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTG----IDIRDGLQLECINCGLCIDACDDV 270 (434)
T ss_pred CCCCCChhhhHHhCCCC----CEeCCCCchhChhhhHHHHhCCCh
Confidence 46899999999999964 22221 2478899999963
No 57
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=89.16 E-value=0.14 Score=55.04 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=25.5
Q ss_pred ccccccCC--CCCCCCCCCCccCCccccccccccccccee
Q 012354 48 KRSKPIPP--GGTYPAKDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 48 ~~~~~~~~--~~~~~~k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
+++..|++ |...++..+|+|||.|+..||- .||..
T Consensus 33 ~~~I~i~~~~gkpvIsE~lCiGCGICvkkCPF---~AI~I 69 (591)
T COG1245 33 KETIEIDEDTGKPVISEELCIGCGICVKKCPF---DAISI 69 (591)
T ss_pred CeeEEecCCCCCceeEhhhhccchhhhccCCc---ceEEE
Confidence 34444544 4567888999999999999995 35544
No 58
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=89.09 E-value=0.11 Score=38.83 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=12.9
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
..+.|++||.|+.+||.
T Consensus 36 ~~~~C~~Cg~C~~~CP~ 52 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPT 52 (55)
T ss_dssp TGGG--TTCHHHHHSTT
T ss_pred CCCccccHhHHHHHcch
Confidence 44579999999999996
No 59
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=88.95 E-value=0.17 Score=50.35 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=25.0
Q ss_pred CCCCccCCcccccccccccccc--------eecC---CCcccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVKDAC--------AFLG---DGMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai--------~f~~---eG~~~c~~vCp~ 99 (465)
++.|++||.|..+||....... ..+. .+|+.|.++||.
T Consensus 200 ~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 248 (255)
T TIGR02163 200 REKCTNCMDCFNVCPEPQVLRMPLKKGGSTLVLSGDCTLCGRCIDVCHE 248 (255)
T ss_pred cccCeEcCCccCcCCCCceeeccccCCCceEeccccccchhHHHHhCCc
Confidence 5689999999999995311111 0111 137788899985
No 60
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=88.85 E-value=0.17 Score=40.43 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=16.4
Q ss_pred CCCCCCCccCCccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~ 78 (465)
......|+|||.|+.+||.+
T Consensus 46 ~~~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 46 RYGEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred hcCCccCCCcChHhhhcCCC
Confidence 33556799999999999964
No 61
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=88.60 E-value=0.18 Score=41.72 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=19.2
Q ss_pred CCCCCCccCCcccccccccccccceec
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.+.+.|.+||.|+.+||. .||.|.
T Consensus 67 i~~~~C~~Cg~C~~~CP~---~AI~~~ 90 (91)
T TIGR02936 67 ANPGNCIGCGACARVCPK---KCQTHA 90 (91)
T ss_pred cCCccCcChhhhhhhCCH---hHEecC
Confidence 345689999999999996 577664
No 62
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=88.58 E-value=0.15 Score=47.51 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=28.1
Q ss_pred CCCCCCCccCCcccccccccccccceecCC-----------Ccccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLGD-----------GMSRIEGLETV 99 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~e-----------G~~~c~~vCp~ 99 (465)
..+.+.|++||.|..+||. .++.+... +|+.|.++||.
T Consensus 109 ~id~~~Ci~Cg~C~~aCp~---~ai~~~~~~~~~i~~~~C~~Cg~Cv~~CP~ 157 (165)
T TIGR01944 109 LIDEDNCIGCTKCIQACPV---DAIVGAAKAMHTVIADECTGCDLCVEPCPT 157 (165)
T ss_pred EEECCcCCChhHHHHhCCc---cceEecCCCceEeecccccChhHHHHhcCc
Confidence 4456689999999999995 34444332 47788899985
No 63
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=88.57 E-value=0.2 Score=51.00 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=36.5
Q ss_pred chhhhhhhhccccc-cCCCCCCCCCCCCccCCcccccccccccccceecC---------CCccccccccc
Q 012354 39 SVKLREDWRKRSKP-IPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLG---------DGMSRIEGLET 98 (465)
Q Consensus 39 ~~~~~~~~~~~~~~-~~~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~---------eG~~~c~~vCp 98 (465)
+.+...|-|..+.| +... .|++||.|..+||. .||.... -||++|-..||
T Consensus 175 s~~~k~~qH~~~~p~v~e~-------kc~~c~~cv~~cp~---~Ai~~~~~~~I~~~~ci~c~~c~~ac~ 234 (354)
T COG2768 175 SLAGKVDQHLDEKPVVVEE-------KCYDCGLCVKICPV---GAITLTKVVKIDYEKCIGCGQCMEACP 234 (354)
T ss_pred ccCcccccccccCceeeee-------cccccchhhhhCCC---cceecccceeechhhccchhhhhhhcc
Confidence 34566778888877 4444 89999999999996 4665431 25778888887
No 64
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=88.54 E-value=0.18 Score=39.46 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=20.0
Q ss_pred CCCCCCccCCcccccccccccccceecCCCc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLGDGM 90 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~eG~ 90 (465)
++.+.|+|||.|...||. --.++.+|.
T Consensus 3 vD~~~C~gcg~C~~~aP~----vF~~d~~g~ 29 (65)
T PF13459_consen 3 VDRDRCIGCGLCVELAPE----VFELDDDGK 29 (65)
T ss_pred EecccCcCccHHHhhCCc----cEEECCCCC
Confidence 456699999999999994 244555563
No 65
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=88.38 E-value=0.22 Score=50.39 Aligned_cols=25 Identities=24% Similarity=0.627 Sum_probs=18.6
Q ss_pred ccCCCCCCCCCCCCccCCccccccccc
Q 012354 52 PIPPGGTYPAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 52 ~~~~~~~~~~k~lCtGCGaC~siCp~~ 78 (465)
++.|+. |..+.|.+|+.|..+||..
T Consensus 150 ~l~~~~--p~~~~C~~C~~C~~aCPt~ 174 (282)
T TIGR00276 150 PLKADE--PIEEYCGRCTKCIDACPTQ 174 (282)
T ss_pred hcccCC--CCCCCCccHHHHHHhcCcc
Confidence 344442 3567899999999999964
No 66
>PRK02651 photosystem I subunit VII; Provisional
Probab=88.22 E-value=0.2 Score=40.60 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.5
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
.+.|.+||.|..+||..
T Consensus 8 ~~~Ci~C~~C~~~CP~~ 24 (81)
T PRK02651 8 YDTCIGCTQCVRACPLD 24 (81)
T ss_pred cccCCCcchHHHHCCcc
Confidence 36899999999999953
No 67
>PRK10194 ferredoxin-type protein; Provisional
Probab=88.07 E-value=0.2 Score=46.38 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=24.9
Q ss_pred CCCCccCCccccccccccccccee----------cC---CCcccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAF----------LG---DGMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f----------~~---eG~~~c~~vCp~ 99 (465)
.+.|++||.|..+||.. ++.+ +. .+|..|.++||.
T Consensus 33 ~~~C~~Cg~C~~aCp~~---~i~~~~~~~~~~~~~~~~C~~C~~C~~~CP~ 80 (163)
T PRK10194 33 LTHCTRCDACINACENN---ILQRGAGGYPSVNFKNNECSFCYACAQACPE 80 (163)
T ss_pred hhhCcChhHHHHHcChh---hcccCCCCceeeeecCCCCCCchhhHhhCcc
Confidence 34799999999999964 3322 22 236778899986
No 68
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=88.01 E-value=0.26 Score=54.54 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=27.8
Q ss_pred CCCCCCCCccCCccc--ccccccccccceecC------------CCccccccccccc
Q 012354 58 TYPAKDHCSRCGLCD--TYYIAHVKDACAFLG------------DGMSRIEGLETVV 100 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~--siCp~~~~~ai~f~~------------eG~~~c~~vCp~~ 100 (465)
-+++.+.|||||.|. +-||. |.+.+ .||+.|.++||..
T Consensus 572 ~~Vd~~~CtGC~~C~~~~~Cps-----i~~~~~~~k~~id~~~C~GCg~C~~iCP~~ 623 (640)
T COG4231 572 YFVDEEKCTGCGDCIVLSGCPS-----IEPDPTFKKARIDPSSCNGCGSCVEVCPSF 623 (640)
T ss_pred ceechhhcCCcHHHHhhcCCce-----EeecCCCCceeecccccccchhhhhcCchh
Confidence 456688999999996 67873 22221 3788999999964
No 69
>COG1146 Ferredoxin [Energy production and conversion]
Probab=87.69 E-value=0.24 Score=38.98 Aligned_cols=38 Identities=26% Similarity=0.207 Sum_probs=25.7
Q ss_pred CCCccCCcccccccccccccce--------ecC---CCccccccccccc
Q 012354 63 DHCSRCGLCDTYYIAHVKDACA--------FLG---DGMSRIEGLETVV 100 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~~~~ai~--------f~~---eG~~~c~~vCp~~ 100 (465)
+.|.|||.|..+||..+..... .+. -||+.|...||..
T Consensus 8 ~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 8 DKCIGCGICVEVCPAGVFDLGEDEGGKPVVARPEECIDCGLCELACPVG 56 (68)
T ss_pred hhcCCCChheeccChhhEEeccccCcceeEeccccCccchhhhhhCCcc
Confidence 3699999999999975433321 111 1477889999964
No 70
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=87.14 E-value=0.24 Score=47.78 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=21.7
Q ss_pred CCCCCCCCCccCCcccccccccccccceecC
Q 012354 57 GTYPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 57 ~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
-...++++|.|||.|...||- .+..|+.
T Consensus 94 iV~vd~d~CIGC~yCi~ACPy---ga~~~~~ 121 (203)
T COG0437 94 IVLVDKDLCIGCGYCIAACPY---GAPQFNP 121 (203)
T ss_pred EEEecCCcccCchHHHhhCCC---CCceeCc
Confidence 345677799999999999994 4566655
No 71
>COG1146 Ferredoxin [Energy production and conversion]
Probab=86.80 E-value=0.28 Score=38.62 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=24.3
Q ss_pred hccccccCCCCCCCCCCCCccCCcccccccccccccceecC
Q 012354 47 RKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 47 ~~~~~~~~~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
+.+..++.|. .|.+||+|...||. +||.+..
T Consensus 32 ~~~~~~~~~e-------~C~~C~~C~~~CP~---~aI~~~~ 62 (68)
T COG1146 32 GGKPVVARPE-------ECIDCGLCELACPV---GAIKVDI 62 (68)
T ss_pred CcceeEeccc-------cCccchhhhhhCCc---ceEEEec
Confidence 5666777777 79999999999996 4676643
No 72
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=86.68 E-value=0.26 Score=40.04 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=14.3
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
.+.|++||.|..+||..
T Consensus 7 ~~~Ci~C~~Cv~~CP~~ 23 (80)
T TIGR03048 7 YDTCIGCTQCVRACPTD 23 (80)
T ss_pred CCcCcCcchHHHHCCcc
Confidence 35799999999999953
No 73
>PRK09898 hypothetical protein; Provisional
Probab=86.67 E-value=0.26 Score=47.52 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=22.1
Q ss_pred CCCCCCccCC--cccccccccccccceec---------CC---Ccccccccccc
Q 012354 60 PAKDHCSRCG--LCDTYYIAHVKDACAFL---------GD---GMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCG--aC~siCp~~~~~ai~f~---------~e---G~~~c~~vCp~ 99 (465)
.....|.+|+ .|..+||.. ++.+. .+ ||..|.+.||.
T Consensus 118 ~~~~~C~~C~~~~C~~~CP~g---Ai~~~~~~g~v~vd~~~CigC~~C~~aCP~ 168 (208)
T PRK09898 118 YTADTCRQCKEPQCMNVCPIG---AITWQQKEGCITVDHKRCIGCSACTTACPW 168 (208)
T ss_pred EeCccCCCccCcchhhhCCcc---eEEeeccCCeEEeccccCCCcCcccccCCC
Confidence 3455788887 788888742 33332 11 35667777774
No 74
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=86.66 E-value=0.15 Score=52.22 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=7.4
Q ss_pred CCCccCC--ccccccc
Q 012354 63 DHCSRCG--LCDTYYI 76 (465)
Q Consensus 63 ~lCtGCG--aC~siCp 76 (465)
..|..|+ .|..+||
T Consensus 129 ~~C~hC~nP~Cv~aCP 144 (321)
T TIGR03478 129 RICNHCTNPACLAACP 144 (321)
T ss_pred ccCCCCCCccchhhCC
Confidence 3455555 5555555
No 75
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=86.49 E-value=0.2 Score=40.15 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=16.3
Q ss_pred CCCCCCCccCCcccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~ 77 (465)
..+++.|.|||+|..+||.
T Consensus 4 ~vDrd~Cigcg~C~~~aPd 22 (68)
T COG1141 4 IVDRDTCIGCGACLAVAPD 22 (68)
T ss_pred EechhhccccchhhhcCCc
Confidence 4567799999999999994
No 76
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=86.38 E-value=0.25 Score=48.51 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=26.9
Q ss_pred CCCCCCccCCcccccccccccccceecC----------CCcccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
.+.+.|.+||.|..+||.. ++.+.+ .+|+.|...||.
T Consensus 145 id~~~C~~C~~C~~~CP~~---ai~~~~~~~~i~~~~C~~Cg~C~~~CP~ 191 (234)
T TIGR02700 145 IDRKRCKGCGICVDACPRS---AIDMVDGKAFIRLLKCVGCGKCKEACPY 191 (234)
T ss_pred EChhHCcCcchHHHhCCcc---cEEecCCceEEchhhCCccchHHhhCCC
Confidence 4566899999999999953 443321 247788899985
No 77
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=86.13 E-value=0.2 Score=49.12 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=29.2
Q ss_pred CCCCCCCccCCcccccccccccccceecC----------CCcccccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETVVH 101 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~~~ 101 (465)
.++.+.|++||.|..+||. .++.+.+ .+|+.|.+.||...
T Consensus 170 ~id~~~C~~C~~C~~aCP~---~ai~~~~~~~~i~~~~C~~C~~C~~~CP~~~ 219 (228)
T TIGR03294 170 VVNQGLCMGCGTCAAACPT---RAIEMEDGRPNVNRDRCIKCGACYVQCPRAF 219 (228)
T ss_pred EEChhhCcChhHHHHhCCH---hhEEEeCCcEEEChhhccCHHHHHHHcCCCC
Confidence 5567899999999999995 3444422 24778889999643
No 78
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=85.69 E-value=0.3 Score=41.65 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCCccCCccccccccc
Q 012354 54 PPGGTYPAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 54 ~~~~~~~~k~lCtGCGaC~siCp~~ 78 (465)
+.|...++.+.|.|||+|..+||.+
T Consensus 52 e~G~V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 52 DDGSVRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred CCCCEEEcCCCCCcchhhhhhcCCC
Confidence 4567778888999999999999863
No 79
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=85.18 E-value=0.34 Score=51.54 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=26.8
Q ss_pred CCCCCCccCCcccccccccccccceecC----------CCcccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
++.+.|.+|+.|..+||.. ++.+.+ .+|..|...||.
T Consensus 7 id~~~Ci~C~~C~~~CP~~---ai~~~~~~~~i~~~~C~~C~~C~~~CP~ 53 (411)
T TIGR03224 7 IDPEICIRCNTCEETCPID---AITHDDRNYVVKADVCNGCMACVSPCPT 53 (411)
T ss_pred eCcccCcCccchhhhCCcc---cEeccCCceEeCcccCcCHHHHHhhcCc
Confidence 3455899999999999953 343322 247788999996
No 80
>PRK13795 hypothetical protein; Provisional
Probab=85.16 E-value=0.3 Score=54.83 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=25.4
Q ss_pred CCCCccCCcccccccccccccceecC------------CCcccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFLG------------DGMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~~------------eG~~~c~~vCp~ 99 (465)
.+.|++||.|..+||.. ++.+.+ .+|+.|..+||.
T Consensus 580 ~~~C~~Cg~C~~~CP~~---ai~~~~~~~~~~id~~~C~~Cg~C~~aCP~ 626 (636)
T PRK13795 580 AAECVGCGVCVGACPTG---AIRIEEGKRKISVDEEKCIHCGKCTEVCPV 626 (636)
T ss_pred cccCCCHhHHHHhCCcc---cEEeecCCceEEechhhcCChhHHHhhcCC
Confidence 34899999999999953 343322 147788899985
No 81
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=85.05 E-value=15 Score=36.48 Aligned_cols=85 Identities=22% Similarity=0.299 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcC--CCCc-ccCchHHHHHHHHcCCCEEEE--EecC
Q 012354 139 VTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKG--VKPT-LSPNLNTLALVEAAGVKRLLF--CGVG 213 (465)
Q Consensus 139 ~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~G--SKY~-qS~~l~~l~ei~~~~~kkVaf--vGtP 213 (465)
.+.+....|++|.+|++|.+.- -.-.+++++|+=+...-| |--+ -+|.-++++.+.+.| .-|+= ...=
T Consensus 77 ~SEi~~t~l~~g~iDaaVivcD------gaGTVI~~nP~lVQGigGR~SGLv~TtPIpevi~~Ie~~g-GiVLd~~tA~I 149 (259)
T TIGR03275 77 ASEILMTALKSGFIDAAVIVCD------GAGTVITTNPALVQGLGGRISGLIETSPIPEVIEKIEDEG-GIVLDPDTATI 149 (259)
T ss_pred HHHHHHHHHhcCCcceEEEEec------CcCeEEeCCHHHHhhccceeeeeeeccccHHHHHHHHhcC-CEEeCCccccc
Confidence 4789999999999999987542 134667788877755544 3222 245555566555543 22221 2333
Q ss_pred hHHHHHHHHHHhcCCCce
Q 012354 214 CQVQALRSVEHHLNLEKL 231 (465)
Q Consensus 214 CQI~aLr~l~~~l~~e~L 231 (465)
=|+.|+++.. .+|++++
T Consensus 150 Dq~~Gv~~Ai-e~Gyk~I 166 (259)
T TIGR03275 150 DQIKGVEKAI-ELGYKKI 166 (259)
T ss_pred cHHHHHHHHH-HcCCceE
Confidence 5666666543 2455443
No 82
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=84.97 E-value=0.28 Score=52.01 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=23.8
Q ss_pred hhhhhhccccccCCCCCCCCCC-------CCccCCccccccccc
Q 012354 42 LREDWRKRSKPIPPGGTYPAKD-------HCSRCGLCDTYYIAH 78 (465)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~k~-------lCtGCGaC~siCp~~ 78 (465)
.+.|.| -+-+|-|-+-...+ +|..||+|...||..
T Consensus 282 Gp~efH--lVlvDNGRs~~~~~~~~re~L~CIRCGaC~n~CPvY 323 (459)
T COG1139 282 GPKEFH--LVLVDNGRSEALADEEFREALRCIRCGACLNHCPVY 323 (459)
T ss_pred CCceEE--EEEEeCCchhhccChHHHHHHHhhcchHhhhcChhh
Confidence 455554 45667775443333 699999999999943
No 83
>PRK13984 putative oxidoreductase; Provisional
Probab=84.70 E-value=0.47 Score=52.60 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.5
Q ss_pred CCCCCCCCCCccCCcccccccc
Q 012354 56 GGTYPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 56 ~~~~~~k~lCtGCGaC~siCp~ 77 (465)
|-...+.+.|.+||.|..+||.
T Consensus 38 ~~~~~d~~~Ci~C~~C~~~Cp~ 59 (604)
T PRK13984 38 GFHINDWEKCIGCGTCSKICPT 59 (604)
T ss_pred CccccChhhCcCccchhhhCCc
Confidence 3344566789999999999994
No 84
>PRK07118 ferredoxin; Validated
Probab=84.64 E-value=0.29 Score=49.55 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=22.5
Q ss_pred CCCccCCcccccccccccccceecC----------CCcccccccccc
Q 012354 63 DHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
..|.|||.|..+||. .+|.+.+ .||..|.+.||.
T Consensus 139 ~~CigCg~C~~aCp~---~AI~~~~g~~~id~~~C~~Cg~Cv~aCP~ 182 (280)
T PRK07118 139 YGCLGLGSCVAACPF---DAIHIENGLPVVDEDKCTGCGACVKACPR 182 (280)
T ss_pred CCCcChhHHHHhCCc---cCeEccCCeEEEChhhCcChhHHHHhcCc
Confidence 458888888888884 3444432 136677788885
No 85
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=84.54 E-value=0.41 Score=46.76 Aligned_cols=16 Identities=19% Similarity=0.615 Sum_probs=9.5
Q ss_pred CCCCccCCc--ccccccc
Q 012354 62 KDHCSRCGL--CDTYYIA 77 (465)
Q Consensus 62 k~lCtGCGa--C~siCp~ 77 (465)
...|..|+. |..+||.
T Consensus 91 ~~~C~~C~~~~Cv~~CP~ 108 (225)
T TIGR03149 91 RKSCQHCDNAPCVAVCPT 108 (225)
T ss_pred chhccCCcCcChHhhCCC
Confidence 345666663 6666664
No 86
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=84.53 E-value=0.26 Score=50.35 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=29.3
Q ss_pred CCCCCCCccCCcccccccccccccceecC----------CCccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLET 98 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp 98 (465)
.++.++|.|||.|+.+||. .|+..+. -||++|.+.||
T Consensus 168 ~~~~E~c~gc~~cv~~C~~---gAI~~~~~~l~id~~~Ci~Cg~Ci~~Cp 214 (317)
T COG2221 168 KVDEELCRGCGKCVKVCPT---GAITWDGKKLKIDGSKCIGCGKCIRACP 214 (317)
T ss_pred ccCHHHhchhHhHHHhCCC---CceeeccceEEEehhhccCccHHhhhCC
Confidence 3567799999999999996 4666543 25789999999
No 87
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=84.48 E-value=0.29 Score=49.58 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=25.7
Q ss_pred CCCCCccCCc--ccccccccccccceecCC-----------Cccccccccccc
Q 012354 61 AKDHCSRCGL--CDTYYIAHVKDACAFLGD-----------GMSRIEGLETVV 100 (465)
Q Consensus 61 ~k~lCtGCGa--C~siCp~~~~~ai~f~~e-----------G~~~c~~vCp~~ 100 (465)
.+..|.+|+- |..+||.+ .++....+ ||..|..+||..
T Consensus 89 ~~~~C~hC~~p~Cv~aCP~~--gA~~~~~~G~V~id~dkCigC~~Cv~aCP~~ 139 (283)
T TIGR01582 89 RKDGCMHCREPGCLKACPAP--GAIIQYQNGIVDFDHSKCIGCGYCIVGCPFN 139 (283)
T ss_pred CCccCCCCCCccccCCCCcC--CeEEEcCCCcEEEeHHHCCcchHHHhhCCCC
Confidence 4556999997 99999952 23322222 477889999963
No 88
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=84.19 E-value=0.63 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=16.8
Q ss_pred CCCCccCCccccccccccccccee
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
.+.|..|+.|+..||. .||..
T Consensus 204 ~~fC~~C~~C~~~CP~---~Ai~~ 224 (314)
T TIGR02486 204 AKFCETCGKCADECPS---GAISK 224 (314)
T ss_pred cccCcchhHHHhhCCc---cccCC
Confidence 4689999999999996 35544
No 89
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=83.79 E-value=0.36 Score=35.64 Aligned_cols=16 Identities=25% Similarity=0.673 Sum_probs=10.5
Q ss_pred CCCCCccCCccccccc
Q 012354 61 AKDHCSRCGLCDTYYI 76 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp 76 (465)
....|++||.|..+||
T Consensus 37 ~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 37 DPERCIGCGACVEVCP 52 (52)
T ss_dssp -TTT--TTSHHHHH-T
T ss_pred CcccccccChhhhhCc
Confidence 3448999999999998
No 90
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=83.51 E-value=0.34 Score=45.18 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=27.9
Q ss_pred CCCCccCCcccccccccccccceecC----CC----------------ccccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFLG----DG----------------MSRIEGLETVV 100 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~~----eG----------------~~~c~~vCp~~ 100 (465)
.+.|..|-+|..+||. +++..+. +| |+.|.+.||..
T Consensus 110 eerCIACklCeavCPa---qaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvd 165 (212)
T KOG3256|consen 110 EERCIACKLCEAVCPA---QAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVD 165 (212)
T ss_pred chhhhhHHHHHHhCCc---ccceeeceecCCccccceeecccceeeeeecchhhhCCcc
Confidence 4679999999999995 5666542 33 67889999964
No 91
>PRK13409 putative ATPase RIL; Provisional
Probab=83.47 E-value=0.47 Score=52.84 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=22.2
Q ss_pred CCCCCCCCCCccCCcccccccccccccceec
Q 012354 56 GGTYPAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 56 ~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
+...++.++|.|||.|+-.||- .||...
T Consensus 42 ~~~~~~e~~c~~c~~c~~~cp~---~a~~i~ 69 (590)
T PRK13409 42 GKPVISEELCIGCGICVKKCPF---DAISIV 69 (590)
T ss_pred CCceeeHhhccccccccccCCc---ceEEEe
Confidence 4467788899999999999995 466553
No 92
>PRK08764 ferredoxin; Provisional
Probab=83.35 E-value=0.48 Score=42.60 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=25.6
Q ss_pred CCCCCccCCcccccccccccccceecC-----------CCcccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~-----------eG~~~c~~vCp~ 99 (465)
..+.|++||.|..+||. .++.+.. .+|+.|.++||.
T Consensus 83 ~~~~Ci~C~~Cv~aCp~---~ai~~~~~~~~~v~~~~C~~Cg~Cv~~CP~ 129 (135)
T PRK08764 83 VEADCIGCTKCIQACPV---DAIVGGAKHMHTVIAPLCTGCELCVPACPV 129 (135)
T ss_pred CcccCcCcchHHHhCCh---hhcCccCCCceeecCCcCcCccchhhhcCc
Confidence 34689999999999995 3343322 146778888885
No 93
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=83.22 E-value=0.4 Score=47.06 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.8
Q ss_pred CCCCCCCCccCCccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYI 76 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp 76 (465)
...+.++|++||.|..+||
T Consensus 141 i~~d~~kCi~Cg~Cv~aC~ 159 (234)
T PRK07569 141 FGIDHNRCVLCTRCVRVCD 159 (234)
T ss_pred EEeehhhCcCccHHHHHHH
Confidence 3345579999999999998
No 94
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=82.73 E-value=0.4 Score=51.46 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=25.0
Q ss_pred CCCCCccCC--cccccccccccccceecC-C-----------Ccccccccccc
Q 012354 61 AKDHCSRCG--LCDTYYIAHVKDACAFLG-D-----------GMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCG--aC~siCp~~~~~ai~f~~-e-----------G~~~c~~vCp~ 99 (465)
....|.+|+ .|..+||. .||.... + ||..|...||.
T Consensus 179 ~p~~C~HC~nP~CV~ACPt---GAI~k~eedGiV~ID~dkCiGCg~CV~ACPy 228 (492)
T TIGR01660 179 LPRLCEHCLNPACVASCPS---GAIYKREEDGIVLIDQDKCRGWRMCISGCPY 228 (492)
T ss_pred CCCcCcCCCcccchhhCcc---CCeEEecCCCeEEEehhhccChHHHHHhCCC
Confidence 456799998 89999985 3554321 2 46778888884
No 95
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=82.72 E-value=0.37 Score=37.03 Aligned_cols=17 Identities=35% Similarity=0.808 Sum_probs=10.6
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
+++.|.+||.|...+|.
T Consensus 2 D~~~Ci~Cg~C~~~aP~ 18 (58)
T PF13370_consen 2 DRDKCIGCGLCVEIAPD 18 (58)
T ss_dssp -TTT--S-SHHHHH-TT
T ss_pred ChhhCcCCChHHHhCcH
Confidence 45789999999999994
No 96
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=82.63 E-value=0.38 Score=47.66 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=20.4
Q ss_pred CCCCccCCc--ccccccccccccceecCC-----------Ccccccccccc
Q 012354 62 KDHCSRCGL--CDTYYIAHVKDACAFLGD-----------GMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCGa--C~siCp~~~~~ai~f~~e-----------G~~~c~~vCp~ 99 (465)
...|.+|+. |..+||.. ++...++ ||..|...||.
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~---Ai~~~~~G~v~id~~~CigC~~Cv~aCP~ 144 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQ---ATFQREDGIVVVDNKRCVGCAYCVQACPY 144 (244)
T ss_pred chhcCCcCCccCccccCCC---CEEECCCCCEEEcHHHCCCHHHHHHhcCC
Confidence 346777774 77777742 3322221 45667777774
No 97
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=82.27 E-value=0.55 Score=53.28 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=25.9
Q ss_pred CCCCCccCCccccccccccccc-------------c-ee---cCCCcccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDA-------------C-AF---LGDGMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~a-------------i-~f---~~eG~~~c~~vCp~ 99 (465)
....|.+||.|..+||.+..-. + .+ .-.+|+.|..+||.
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs 423 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPS 423 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCC
Confidence 4567999999999999642200 0 00 01237889999995
No 98
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=81.71 E-value=0.46 Score=45.07 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=29.7
Q ss_pred CCCCCCCCccCCcccccccccccccceec-----------CCCccccccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFL-----------GDGMSRIEGLETVV 100 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~~~~ai~f~-----------~eG~~~c~~vCp~~ 100 (465)
.+++.+.|.||.-|.+.||. .||..- -.||..|..-||..
T Consensus 110 a~i~e~~ciGCtkCiqaCpv---dAivg~~~~mhtv~~dlCTGC~lCva~CPtd 160 (198)
T COG2878 110 ALIDEANCIGCTKCIQACPV---DAIVGATKAMHTVIADLCTGCDLCVAPCPTD 160 (198)
T ss_pred eEecchhccccHHHHHhCCh---hhhhccchhHHHHHHHHhcCCCcccCCCCCC
Confidence 35566789999999999995 444331 16899999999953
No 99
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=81.33 E-value=0.7 Score=43.80 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=19.9
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
++.+.|++||.|..+||. .|+.|.+
T Consensus 99 id~~~Ci~Cg~Cv~aCP~---~AI~~~~ 123 (183)
T TIGR00403 99 IDFGVCIFCGNCVEYCPT---NCLSMTE 123 (183)
T ss_pred cCcccccCcCchhhhcCC---CCeeccc
Confidence 445689999999999996 5777654
No 100
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=81.29 E-value=0.73 Score=42.91 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=19.4
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
++.+.|.+||+|..+||. .|+.+..
T Consensus 96 id~~~C~~Cg~C~~~CP~---~AI~~~~ 120 (167)
T CHL00014 96 IDFGVCIFCGNCVEYCPT---NCLSMTE 120 (167)
T ss_pred CCCCcCcCccchHhhcCc---CceecCC
Confidence 344579999999999996 5776643
No 101
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=81.17 E-value=0.61 Score=45.29 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=25.9
Q ss_pred CCccCCccccccccccccccee---------------cC---CCccccccccccc
Q 012354 64 HCSRCGLCDTYYIAHVKDACAF---------------LG---DGMSRIEGLETVV 100 (465)
Q Consensus 64 lCtGCGaC~siCp~~~~~ai~f---------------~~---eG~~~c~~vCp~~ 100 (465)
.+.+||+|..+||.. ..||.+ +. .||+.|+++||..
T Consensus 137 ~g~~C~~C~~~CP~~-~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~ 190 (213)
T TIGR00397 137 KGLNCSICVRVCPIR-GEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLS 190 (213)
T ss_pred CCCCcccchhhCCCC-cceEEEecccccCCcccceEEecccCCCcchhhHhCCCC
Confidence 678999999999963 133332 22 4789999999953
No 102
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=81.16 E-value=0.61 Score=48.30 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=25.6
Q ss_pred CCCCCccCC--cccccccccccccceecCC------------Cccccccccccc
Q 012354 61 AKDHCSRCG--LCDTYYIAHVKDACAFLGD------------GMSRIEGLETVV 100 (465)
Q Consensus 61 ~k~lCtGCG--aC~siCp~~~~~ai~f~~e------------G~~~c~~vCp~~ 100 (465)
.+..|..|+ .|..+||. .++....+ ||..|...||..
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~---gAi~k~~~~g~V~id~dkCigCg~Cv~aCP~g 158 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPV---SALTKDPKTGIVHYDKDVCTGCRYCMVACPFN 158 (328)
T ss_pred ccccCCCcCchhhHhhCCC---CCEEecccCCcccCCHHHcCcccHHHHhCCcc
Confidence 455799998 89999995 34444321 477888889853
No 103
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=80.77 E-value=0.71 Score=39.79 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=19.7
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
++.+.|++||.|..+||. .|+.+..
T Consensus 78 id~~~C~~Cg~Cv~~CP~---~AI~~~~ 102 (105)
T PRK09624 78 FDYDYCKGCGICANECPT---KAIEMVR 102 (105)
T ss_pred ECchhCCCcCchhhhcCc---CcEEEec
Confidence 455689999999999996 4676653
No 104
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=80.76 E-value=0.75 Score=47.73 Aligned_cols=26 Identities=35% Similarity=0.824 Sum_probs=20.1
Q ss_pred cccCCCCCCCCC-CCCccCCccccccccc
Q 012354 51 KPIPPGGTYPAK-DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 51 ~~~~~~~~~~~k-~lCtGCGaC~siCp~~ 78 (465)
.++.|+ .|.. +.|..|..|..+||+.
T Consensus 174 ~~l~pd--~p~~~~~Cg~C~~CldaCPt~ 200 (337)
T COG1600 174 APLPPD--RPEEEDHCGSCTRCLDACPTG 200 (337)
T ss_pred CCCCCC--CCCCCccChhhHHHHhhCCcc
Confidence 455666 4555 8999999999999964
No 105
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=80.45 E-value=0.78 Score=46.80 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=20.1
Q ss_pred CCCCCccCCcccccccccccccceecCC
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~e 88 (465)
+.+.|++||.|..+||. .|+.|..|
T Consensus 287 d~~~C~gCg~C~~~CP~---~AI~~~~e 311 (312)
T PRK14028 287 DYQYCKGCGVCAEVCPT---GAIQMVRE 311 (312)
T ss_pred CcccCcCcCchhhhCCH---hheEeccc
Confidence 34679999999999996 57877654
No 106
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=79.80 E-value=0.57 Score=46.61 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=24.7
Q ss_pred CCCCccCCcccccccccccccceecCC-----------Ccccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFLGD-----------GMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~~e-----------G~~~c~~vCp~ 99 (465)
++.|.+|+.|...||.. ++.+++. +|..|...||.
T Consensus 168 ~~~C~~C~~C~~~CP~~---vi~~d~~~~~v~~~~~C~~C~~C~~~Cp~ 213 (259)
T cd07030 168 DEDCDGCGKCVEECPRG---VLELEEGKVVVEDLEDCSLCKLCERACDA 213 (259)
T ss_pred hhhCCChHHHHHhCCcc---ceEccCCeeEEeChhhCcCchHHHHhCCC
Confidence 46799999999999963 4433321 25667888884
No 107
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=79.48 E-value=0.97 Score=48.46 Aligned_cols=19 Identities=26% Similarity=0.642 Sum_probs=15.8
Q ss_pred CCCCCCccCCccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~ 78 (465)
.....|.+||.|..+||..
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~ 378 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMN 378 (435)
T ss_pred ccCCcCcCccchhhhCccc
Confidence 3456899999999999953
No 108
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=79.45 E-value=0.85 Score=39.21 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=20.6
Q ss_pred CCCCCCCccCCcccccccccccccceecC
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
.++.++|++||.|..+||. .|+.+..
T Consensus 77 ~id~~~C~~Cg~Cv~~CP~---~AI~~~~ 102 (105)
T PRK09623 77 AIDYDYCKGCGICANECPT---KAITMVK 102 (105)
T ss_pred EeCchhCcCcchhhhhcCc---CcEEecc
Confidence 3456789999999999996 5777654
No 109
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=78.36 E-value=41 Score=33.60 Aligned_cols=84 Identities=20% Similarity=0.300 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcC--CCCc-ccCchHHHHHHHHcCCCEEE--EEecC
Q 012354 139 VTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKG--VKPT-LSPNLNTLALVEAAGVKRLL--FCGVG 213 (465)
Q Consensus 139 ~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~G--SKY~-qS~~l~~l~ei~~~~~kkVa--fvGtP 213 (465)
.+.+....|++|.+|++|.+.-. .-.+++++|+=+...-| |--+ -+|.-.+++.+.+.| .-|+ =.+.=
T Consensus 77 aSEil~t~l~~g~iDaaV~vcdG------AGTVI~~~P~lVQGiGGrmSGLv~T~PI~evi~~Ie~~g-giVLd~~tA~I 149 (258)
T PF09872_consen 77 ASEILMTALRRGLIDAAVIVCDG------AGTVITTNPELVQGIGGRMSGLVSTTPIPEVIERIEEKG-GIVLDPETARI 149 (258)
T ss_pred HHHHHHHHHhcCCcceEEEEecC------CCeEEeCCHHHHhhccceeeeeeeccchHHHHHHHHhcC-CEEeCCccccc
Confidence 47899999999999999885422 34567777776655433 2222 234445555554433 2222 12333
Q ss_pred hHHHHHHHHHHhcCCCc
Q 012354 214 CQVQALRSVEHHLNLEK 230 (465)
Q Consensus 214 CQI~aLr~l~~~l~~e~ 230 (465)
=|+.|+++..+ .|+++
T Consensus 150 Dq~~Gv~kAie-~Gyk~ 165 (258)
T PF09872_consen 150 DQVEGVKKAIE-MGYKR 165 (258)
T ss_pred cHHHHHHHHHH-cCCce
Confidence 45666655432 35544
No 110
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=78.06 E-value=0.75 Score=45.88 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=25.1
Q ss_pred CCCCccCCcccccccccccccceecC-----------CCcccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~~-----------eG~~~c~~vCp~ 99 (465)
++.|.+|+.|...||.. ++.+++ .+|..|.+.||.
T Consensus 168 ~~~C~~C~~C~~~CP~~---vi~~~~~~~~v~~~~~C~~C~~Ci~~CP~ 213 (263)
T PRK00783 168 SEDCDECEKCVEACPRG---VLELKEGKLVVTDLLNCSLCKLCERACPG 213 (263)
T ss_pred cccCCchHHHHHhCCcc---ccEecCCeEEEeChhhCCCchHHHHhCCC
Confidence 67899999999999963 444432 135677788883
No 111
>PRK10194 ferredoxin-type protein; Provisional
Probab=78.05 E-value=0.95 Score=41.81 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=23.4
Q ss_pred CccCCccccccccccccccee------------cC---CCcccccccccc
Q 012354 65 CSRCGLCDTYYIAHVKDACAF------------LG---DGMSRIEGLETV 99 (465)
Q Consensus 65 CtGCGaC~siCp~~~~~ai~f------------~~---eG~~~c~~vCp~ 99 (465)
|.+|+.|..+||.. +|.+ +. .||+.|.+.||.
T Consensus 106 ~~~C~~C~~~CP~~---Ai~~~~~~~~~~~~~i~~~~C~gCg~C~~~CP~ 152 (163)
T PRK10194 106 SVECRRCQDSCEPM---AIIFRPTLSGIYQPQLNSQLCNGCGACAASCPV 152 (163)
T ss_pred CCCcCcchhhCCHh---HeEeeecCCCcccceeCcccCcCcchhhhhCCc
Confidence 58999999999953 3332 22 378889999995
No 112
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=77.91 E-value=0.74 Score=52.55 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=26.0
Q ss_pred CCCCCccCCccccccccccc--ccce---------e--c---CCCcccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHVK--DACA---------F--L---GDGMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~--~ai~---------f--~---~eG~~~c~~vCp~ 99 (465)
..+.|++||.|..+||.... ..+. + . -.+|+.|.++||.
T Consensus 397 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~ 451 (784)
T TIGR00314 397 LANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPK 451 (784)
T ss_pred hcccCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCC
Confidence 45689999999999995411 0111 0 0 1247889999995
No 113
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=77.62 E-value=0.92 Score=41.73 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=8.8
Q ss_pred CCCccCC--cccccccc
Q 012354 63 DHCSRCG--LCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCG--aC~siCp~ 77 (465)
..|.+|+ .|..+||.
T Consensus 62 ~~C~~C~~~~C~~~CP~ 78 (161)
T TIGR02951 62 ISCNHCADPACVKNCPT 78 (161)
T ss_pred ccCCCcCCcchHHhCCC
Confidence 3466666 66666663
No 114
>PLN00071 photosystem I subunit VII; Provisional
Probab=77.60 E-value=1.1 Score=36.30 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=17.5
Q ss_pred CCCCCccCCccccccccccccccee
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
..+.|.+||.|..+||. .++.+
T Consensus 44 ~~~~C~~Cg~C~~~CP~---~Ai~~ 65 (81)
T PLN00071 44 RTEDCVGCKRCESACPT---DFLSV 65 (81)
T ss_pred CCCcCcChhhHHhhcCC---ccceE
Confidence 34689999999999996 45554
No 115
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=77.10 E-value=1.2 Score=35.54 Aligned_cols=24 Identities=25% Similarity=0.603 Sum_probs=18.9
Q ss_pred CCCCCccCCcccccccccccccceecC
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
..+.|.+||.|..+||. .++.|..
T Consensus 53 ~~~~C~~C~~C~~~CP~---~Ai~~~~ 76 (78)
T TIGR02179 53 DYDYCKGCGICANVCPV---KAIEMVR 76 (78)
T ss_pred cCccCcCccchhhhCCc---cccEecc
Confidence 34589999999999996 4676653
No 116
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=77.08 E-value=0.98 Score=45.07 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=28.3
Q ss_pred CCCCCCc-----cCCcccccccccccccceec------------------C---CCccccccccccc
Q 012354 60 PAKDHCS-----RCGLCDTYYIAHVKDACAFL------------------G---DGMSRIEGLETVV 100 (465)
Q Consensus 60 ~~k~lCt-----GCGaC~siCp~~~~~ai~f~------------------~---eG~~~c~~vCp~~ 100 (465)
+..+.|. +||.|..+||.. ..||.+. . .||+.|+++||..
T Consensus 134 id~~~Ci~~~~~~C~~C~~~CP~~-~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 134 VDQENCLNFQGLRCDVCYRVCPLI-DKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLE 199 (254)
T ss_pred cchhhccccCCCchHHHhhhCCCc-cCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCC
Confidence 5566898 899999999941 1244332 1 3688999999964
No 117
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=77.07 E-value=1.3 Score=40.98 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=20.2
Q ss_pred CCCCCCccCCcccccccccccccceecCC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~e 88 (465)
.+.+.|++||.|..+||. .++.+...
T Consensus 94 i~~~~C~~Cg~Cv~~CP~---~Ai~~~~~ 119 (164)
T PRK05888 94 INFGRCIFCGFCEEACPT---DAIVETPD 119 (164)
T ss_pred cCCCcCcccCcchhhcCc---CcceecCc
Confidence 345689999999999996 57766543
No 118
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=76.52 E-value=1.3 Score=37.82 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=19.5
Q ss_pred CCCCCccCCcccccccccccccceecCC
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~e 88 (465)
..+.|++||.|..+||. .++.+...
T Consensus 51 ~~~~C~~C~~C~~~CP~---~AI~~~~~ 75 (103)
T PRK09626 51 HPESCIGCRECELHCPD---FAIYVADR 75 (103)
T ss_pred CCccCCCcCcchhhCCh---hhEEEecc
Confidence 34589999999999996 57766544
No 119
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=76.49 E-value=0.62 Score=34.45 Aligned_cols=19 Identities=26% Similarity=0.606 Sum_probs=12.0
Q ss_pred CCCCCCCccCCcccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~ 77 (465)
.+..+.|++||.|..+||.
T Consensus 32 ~~~~~~C~~C~~C~~~CP~ 50 (52)
T PF12838_consen 32 VIDPDKCTGCGACVEVCPT 50 (52)
T ss_dssp EETGGG----SHHHHHTTT
T ss_pred EEechhCcCcChhhhhCcC
Confidence 3456689999999999995
No 120
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=76.23 E-value=1.2 Score=50.08 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=17.3
Q ss_pred CCCCCCCCCCccCCcccccccc
Q 012354 56 GGTYPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 56 ~~~~~~k~lCtGCGaC~siCp~ 77 (465)
+....+.+.|++||.|..+||.
T Consensus 78 ~~~~id~~~C~~C~~C~~~CP~ 99 (654)
T PRK12769 78 DSIQVNQQKCIGCKSCVVACPF 99 (654)
T ss_pred CeEEEecccccCcChhcccCCc
Confidence 3345566789999999999995
No 121
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=76.16 E-value=1.1 Score=40.22 Aligned_cols=19 Identities=26% Similarity=0.683 Sum_probs=15.9
Q ss_pred CCCCCCccCCccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~ 78 (465)
++.+.|.+||.|..+||.+
T Consensus 86 i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 86 VDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred eCcCcCcChhHHHHHCCcC
Confidence 4456899999999999963
No 122
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.88 E-value=1.3 Score=49.81 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCccCCcccccccccccccceecC-------------CCcccccccccc
Q 012354 55 PGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLG-------------DGMSRIEGLETV 99 (465)
Q Consensus 55 ~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~-------------eG~~~c~~vCp~ 99 (465)
++....+.+.|.|||.|..+||. .++.+.. .||+.|.+.||.
T Consensus 77 ~~~v~~d~~~C~gC~~C~~~CP~---~ai~~~~~~~~kC~~C~~~~~~~~~Cv~~CP~ 131 (639)
T PRK12809 77 SDSVQLDEQKCIGCKRCAIACPF---GVVEMVDTIAQKCDLCNQRSSGTQACIEVCPT 131 (639)
T ss_pred ccceecChhhCcchhhHhhhcCC---CCEEccCCCcccccCCcccCCCCChhhhhCcc
Confidence 44556677789999999999995 3444422 123468899995
No 123
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=75.87 E-value=0.88 Score=51.98 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=25.6
Q ss_pred CCCCccCCccccccccccc--ccceec--------------CCCcccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVK--DACAFL--------------GDGMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~--~ai~f~--------------~eG~~~c~~vCp~ 99 (465)
.+.|.+||.|..+||.... ..+.+. -.+|+.|..+||.
T Consensus 403 adrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~~l~~l~~~Ct~CG~CeeVCPt 456 (781)
T PRK00941 403 AKKCTECGWCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCPK 456 (781)
T ss_pred hhhCcCCCCccccCCCCcchhHHHHHHhcCChhhhhhhhhhccchhHHhhhCCC
Confidence 4579999999999996411 011111 1247899999996
No 124
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=75.79 E-value=1.2 Score=45.64 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=21.0
Q ss_pred CCCCCCCCccCCcccccccccccccceecCC
Q 012354 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~~~~ai~f~~e 88 (465)
..++.+.|++||.|..+||. .|+....+
T Consensus 196 ~~id~~~C~~Cg~Cv~~CP~---~Al~~~~~ 223 (314)
T TIGR02912 196 VVRDHSKCIGCGECVLKCPT---GAWTRSEE 223 (314)
T ss_pred EEeCCCcCcCcchhhhhCCH---hhcccCcC
Confidence 34566799999999999996 46655443
No 125
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=75.56 E-value=0.75 Score=34.35 Aligned_cols=15 Identities=33% Similarity=0.917 Sum_probs=10.3
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
+.|++||+|.++||.
T Consensus 3 ~~Ci~Cg~C~~~CP~ 17 (57)
T PF13183_consen 3 SKCIRCGACTSVCPV 17 (57)
T ss_dssp HC--S-SHHHHCSHH
T ss_pred HHccCccChHHHChh
Confidence 369999999999994
No 126
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=75.52 E-value=1.1 Score=49.70 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=14.4
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
+.-.|.|||+|..+||.
T Consensus 606 d~~~C~GCg~C~~iCP~ 622 (640)
T COG4231 606 DPSSCNGCGSCVEVCPS 622 (640)
T ss_pred cccccccchhhhhcCch
Confidence 33379999999999995
No 127
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=75.52 E-value=0.86 Score=51.82 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=25.7
Q ss_pred CCCCCccCCccccccccccc--ccceecC--------------CCcccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHVK--DACAFLG--------------DGMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~--~ai~f~~--------------eG~~~c~~vCp~ 99 (465)
..+.|++||.|..+||.... ..+.... .+|+.|.++||.
T Consensus 363 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~ 417 (731)
T cd01916 363 LAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPK 417 (731)
T ss_pred hhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCC
Confidence 34579999999999996411 1111110 137889999995
No 128
>PRK07118 ferredoxin; Validated
Probab=75.47 E-value=1 Score=45.65 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=25.7
Q ss_pred ccccCCCCCCCCCCCCccCCcccccccccccccceecCC
Q 012354 50 SKPIPPGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 50 ~~~~~~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~e 88 (465)
|..+.+|...++.+.|++||.|..+||. .++.+...
T Consensus 155 AI~~~~g~~~id~~~C~~Cg~Cv~aCP~---~ai~~~~~ 190 (280)
T PRK07118 155 AIHIENGLPVVDEDKCTGCGACVKACPR---NVIELIPK 190 (280)
T ss_pred CeEccCCeEEEChhhCcChhHHHHhcCc---cceeeecc
Confidence 4444455566778899999999999996 45665543
No 129
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=74.96 E-value=1.3 Score=47.56 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=15.0
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
.-..|..||+|.++||..
T Consensus 291 e~~~CIrCG~C~~~CPvy 308 (432)
T TIGR00273 291 EVLACIRCGACQNECPVY 308 (432)
T ss_pred hHhhCCCCCCccccCcch
Confidence 355799999999999953
No 130
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=74.86 E-value=1.6 Score=42.43 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=20.8
Q ss_pred CCCCCCCccCCcccccccccccccceec
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.++.+.|+|||.|..+||.. ..||...
T Consensus 171 ~Vd~~~C~gCG~C~~~CP~~-~~AI~v~ 197 (213)
T TIGR00397 171 TVDSAKCTGCGTCEKHCVLS-EAAIRVL 197 (213)
T ss_pred EEecccCCCcchhhHhCCCC-CCeEEEe
Confidence 34677899999999999963 4577554
No 131
>CHL00065 psaC photosystem I subunit VII
Probab=74.84 E-value=1.5 Score=35.64 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=18.0
Q ss_pred CCCCCccCCcccccccccccccceec
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
..+.|.+||.|..+||. +|+.+.
T Consensus 44 ~~~~C~~C~~C~~~CP~---~Ai~~~ 66 (81)
T CHL00065 44 RTEDCVGCKRCESACPT---DFLSVR 66 (81)
T ss_pred CCCcCCChhhhhhhcCc---cccEEE
Confidence 34689999999999996 466553
No 132
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=74.72 E-value=1.3 Score=53.31 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.0
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
.+.+.|++||.|+.+||.+ ..|+.|..
T Consensus 736 i~~~~C~gCg~Cv~~CP~~-~~Al~m~~ 762 (1165)
T TIGR02176 736 ISPLDCTGCGNCVDICPAK-EKALVMQP 762 (1165)
T ss_pred eccccCcCccchhhhcCCC-Cccccccc
Confidence 4567899999999999974 25777754
No 133
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=74.29 E-value=1.6 Score=38.01 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=18.7
Q ss_pred CCCCCCccCCcccccccccccccceec
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
...+.|.+||.|..+||. .++.+.
T Consensus 79 ~~~~~C~~Cg~Cv~~CP~---~al~~~ 102 (122)
T TIGR01971 79 INFGRCIFCGLCEEACPT---DAIVLT 102 (122)
T ss_pred ECcccCCCCCchhhhCCC---cccccc
Confidence 455689999999999996 456554
No 134
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=74.15 E-value=0.97 Score=34.35 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=10.5
Q ss_pred CCCCCCccCCccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~ 78 (465)
..-..|++||+|...||.+
T Consensus 41 ~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 41 HAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp TTTTT--S--HHHHH-TT-
T ss_pred cccccCcCcCcCcccccCC
Confidence 3456899999999999964
No 135
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=73.76 E-value=1.4 Score=38.49 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=19.8
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
+..+.|.+||.|..+||. .++.+..
T Consensus 70 i~~~~C~~Cg~Cv~~CP~---~Ai~~~~ 94 (120)
T PRK08348 70 LWTGRCVFCGQCVDVCPT---GALQMSD 94 (120)
T ss_pred ecCCcCcChhhhHHhCCc---CcEEecc
Confidence 345689999999999996 5777654
No 136
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=73.59 E-value=1.5 Score=41.43 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=18.9
Q ss_pred CCCCccCCcccccccccccccceecC
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
-..|+-||.|..+||. .|+.+.+
T Consensus 94 ~grCIfCg~C~e~CPt---~Al~~t~ 116 (172)
T COG1143 94 LGRCIFCGLCVEVCPT---GALVLTP 116 (172)
T ss_pred cccccccCchhhhCch---hhhcCCc
Confidence 3489999999999996 6777754
No 137
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=73.54 E-value=1.7 Score=51.42 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=27.7
Q ss_pred CCCCCCccC----Ccccccccccccccce---ec--------C---CCcccccccccc
Q 012354 60 PAKDHCSRC----GLCDTYYIAHVKDACA---FL--------G---DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGC----GaC~siCp~~~~~ai~---f~--------~---eG~~~c~~vCp~ 99 (465)
...+.|.+| |.|..+||.+...++. |. + .||+.|..+||.
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~~~~~C~~CG~C~~~CP~ 940 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRANVSIAVPGFQNRFQIVHLDAMCNECGNCAQFCPW 940 (1019)
T ss_pred ccccccCCcccccchhhhhCCcccccccccCCcccCCceEEcCccCccccchhhhCCC
Confidence 345689999 9999999964312233 11 1 248899999995
No 138
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=73.03 E-value=1.5 Score=41.12 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=7.9
Q ss_pred CCccCC--cccccccc
Q 012354 64 HCSRCG--LCDTYYIA 77 (465)
Q Consensus 64 lCtGCG--aC~siCp~ 77 (465)
.|.+|+ .|..+||.
T Consensus 57 ~C~~C~~~~C~~~Cp~ 72 (181)
T PRK10330 57 VCRQCEDAPCANVCPN 72 (181)
T ss_pred cCcCcCCcHHHHHcCc
Confidence 455555 55555553
No 139
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=73.02 E-value=1.4 Score=46.29 Aligned_cols=15 Identities=27% Similarity=0.871 Sum_probs=13.5
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
+.|.+||.|.++||.
T Consensus 23 ~~C~~Cg~C~~~CP~ 37 (407)
T PRK11274 23 RKCVHCGFCTATCPT 37 (407)
T ss_pred HhCccCCCccccCCc
Confidence 469999999999995
No 140
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=72.63 E-value=1.6 Score=48.72 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=26.6
Q ss_pred CCCCCCCccCCcccc--ccccccc--ccceecC--CCcccccccccc
Q 012354 59 YPAKDHCSRCGLCDT--YYIAHVK--DACAFLG--DGMSRIEGLETV 99 (465)
Q Consensus 59 ~~~k~lCtGCGaC~s--iCp~~~~--~ai~f~~--eG~~~c~~vCp~ 99 (465)
..+.+.|++||.|.. .||.... ....++. -+|+.|.++||.
T Consensus 546 ~id~~~C~~C~~C~~~~~CP~~~~~~~~~~i~~~C~~Cg~C~~~CP~ 592 (595)
T TIGR03336 546 KVDQDKCIGCKKCIKELGCPAIEPEDKEAVIDPLCTGCGVCAQICPF 592 (595)
T ss_pred EEcCCcCCCccccccccCCCCccccCCcceeCCCCcCHHHHHhhCcc
Confidence 445678999999999 9994210 0111111 257889999984
No 141
>PRK02651 photosystem I subunit VII; Provisional
Probab=72.24 E-value=1.9 Score=34.74 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=17.6
Q ss_pred CCCCCccCCccccccccccccccee
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
..+.|.+||.|..+||. .++.+
T Consensus 44 ~~~~C~~Cg~C~~~CP~---~ai~~ 65 (81)
T PRK02651 44 RTEDCVGCKRCETACPT---DFLSI 65 (81)
T ss_pred CCCcCCChhhhhhhcCC---CceEE
Confidence 34589999999999996 46655
No 142
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=71.97 E-value=1.5 Score=40.74 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=19.2
Q ss_pred CCCCCCccCCcccccccccccccceec
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
...+.|++||.|..+||. .++.|.
T Consensus 140 i~~~~C~~Cg~Cv~~CP~---~AI~~~ 163 (165)
T TIGR01944 140 VIADECTGCDLCVEPCPT---DCIEMI 163 (165)
T ss_pred eecccccChhHHHHhcCc---CceEee
Confidence 345689999999999996 577664
No 143
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=71.14 E-value=1.7 Score=46.03 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=26.2
Q ss_pred CCCCCCccCCccc--cccccccccccee----cC---CCcccccccccc
Q 012354 60 PAKDHCSRCGLCD--TYYIAHVKDACAF----LG---DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~--siCp~~~~~ai~f----~~---eG~~~c~~vCp~ 99 (465)
...+.|++|+.|. .+||.. ++.. +. .+|+.|.++||.
T Consensus 299 id~dkCi~Cg~C~~~~aCPt~---AI~~~~~Id~~~Ci~CGaCV~aCP~ 344 (391)
T TIGR03287 299 YNPERCENCDPCLVEEACPVP---AIKKDGTLNTEDCFGCGYCAEICPG 344 (391)
T ss_pred EchhhCcCCCCCcCCcCCCHh---hEeccceeChHhCcChHHHHhhCCc
Confidence 3456899999994 899964 3321 21 257889999995
No 144
>PRK06991 ferredoxin; Provisional
Probab=70.83 E-value=1.4 Score=44.34 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=18.7
Q ss_pred CCCCCCccCCcccccccccccccceec
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
+....|++||.|..+||. .+|.|.
T Consensus 112 v~~~~CigCg~Cv~vCP~---~AI~~~ 135 (270)
T PRK06991 112 VLADLCTGCDLCVPPCPV---DCIDMV 135 (270)
T ss_pred eCHhhCCCchHHHhhCCc---CCeEee
Confidence 345689999999999996 456554
No 145
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=70.58 E-value=1.9 Score=44.88 Aligned_cols=32 Identities=6% Similarity=-0.227 Sum_probs=24.8
Q ss_pred CccCCcccccccccccccceecCC--------------Ccccccccccc
Q 012354 65 CSRCGLCDTYYIAHVKDACAFLGD--------------GMSRIEGLETV 99 (465)
Q Consensus 65 CtGCGaC~siCp~~~~~ai~f~~e--------------G~~~c~~vCp~ 99 (465)
|++||.|..+||. .||.+..+ ||+.|.++||.
T Consensus 183 ~c~~~~Cv~~CP~---~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~ 228 (341)
T TIGR02066 183 VCEIPSVVAACPT---GALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPA 228 (341)
T ss_pred hcCCCceEeeCch---hhceecccCCCCceeeccccCCcCCchHHhCch
Confidence 7788999999996 47777321 37889999994
No 146
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=70.38 E-value=2 Score=34.76 Aligned_cols=17 Identities=18% Similarity=0.614 Sum_probs=14.8
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
..+.|.+||.|...||.
T Consensus 43 ~~~~C~~Cg~C~~~CP~ 59 (80)
T TIGR03048 43 RTEDCVGCKRCESACPT 59 (80)
T ss_pred CCCcCcChhHHHHhcCc
Confidence 34689999999999996
No 147
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=70.37 E-value=1.6 Score=43.35 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=19.3
Q ss_pred CCCCCCCccCCcccccccccccccceec
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.++.+.|+.||.|..+||. +|+.|.
T Consensus 230 ~i~~~~C~~Cg~Cv~~CP~---~Ai~f~ 254 (255)
T TIGR02163 230 LVLSGDCTLCGRCIDVCHE---DVLGFT 254 (255)
T ss_pred EeccccccchhHHHHhCCc---cccccc
Confidence 3445589999999999996 566653
No 148
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=70.37 E-value=2.4 Score=50.16 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=25.5
Q ss_pred CCCcc----CCcccccccccccccc---ee---------c--CCCcccccccccc
Q 012354 63 DHCSR----CGLCDTYYIAHVKDAC---AF---------L--GDGMSRIEGLETV 99 (465)
Q Consensus 63 ~lCtG----CGaC~siCp~~~~~ai---~f---------~--~eG~~~c~~vCp~ 99 (465)
+.|.+ ||.|..+||.+....+ .+ + -.+|+.|..+||.
T Consensus 881 ~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~ 935 (1012)
T TIGR03315 881 QRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPY 935 (1012)
T ss_pred ccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCC
Confidence 78996 9999999996421111 01 1 1357899999995
No 149
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=70.34 E-value=1.5 Score=43.78 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=19.3
Q ss_pred CCCCCCccCCccccccccccccccee
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
++.+.|+|||.|..+||.. ..+|..
T Consensus 181 Id~d~C~gCG~C~~aCP~~-~~AI~v 205 (254)
T PRK09476 181 VHSDACTGCGKCEKACVLE-KAAIKV 205 (254)
T ss_pred EeHHHCcCcChhhHhcCCC-cceEEE
Confidence 4557899999999999963 346654
No 150
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=69.90 E-value=2.2 Score=44.60 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=14.5
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
-..|..||.|.++||..
T Consensus 6 ~~~Ci~Cg~C~~~CP~~ 22 (396)
T PRK11168 6 FDSCIKCTVCTTACPVA 22 (396)
T ss_pred hhhcCCCCCCCccCCCc
Confidence 34699999999999964
No 151
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=69.01 E-value=2.3 Score=40.00 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=19.5
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
.+.+.|++||.|..+||. .|+.+..
T Consensus 70 i~~~~C~~Cg~C~~vCP~---~AI~~~~ 94 (180)
T PRK12387 70 FNLGRCIFCGRCEEVCPT---AAIKLSQ 94 (180)
T ss_pred eccccCcCccchhhhcCc---CceEccC
Confidence 345589999999999996 5776653
No 152
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=68.76 E-value=1.9 Score=41.25 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=19.6
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
...+.|++||.|..+||. .++.+..
T Consensus 141 v~~~~C~~Cg~Cv~vCP~---~AI~~~~ 165 (191)
T PRK05113 141 VISDLCTGCDLCVAPCPT---DCIEMIP 165 (191)
T ss_pred ecCCcCCchHHHHHHcCc---CceEEee
Confidence 345689999999999996 5776653
No 153
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=68.67 E-value=1.3 Score=33.03 Aligned_cols=15 Identities=27% Similarity=0.714 Sum_probs=7.9
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|++||.|..+||.
T Consensus 41 ~~C~~C~~C~~~CP~ 55 (57)
T PF13183_consen 41 WSCTTCGACSEVCPV 55 (57)
T ss_dssp GG-----HHHHH-TT
T ss_pred cCCcCcCCccCcCcc
Confidence 589999999999996
No 154
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=68.44 E-value=2.1 Score=35.14 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=18.3
Q ss_pred CCCCCCccCCcccccccccccccceec
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
++.++|+.||+|..+||. .|+.+.
T Consensus 60 ~~~~~C~~C~~C~~~Cp~---~a~~~~ 83 (99)
T COG1145 60 IDPDLCVLCGACLKVCPV---DALSIA 83 (99)
T ss_pred EccccCccccchHhhCCc---CCeehh
Confidence 345699999999999996 455543
No 155
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=68.39 E-value=2 Score=45.64 Aligned_cols=26 Identities=15% Similarity=0.396 Sum_probs=19.9
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
+..++|++||+|..+||.. .|+.+..
T Consensus 374 i~~~~C~~Cg~C~~~CP~~--~Ai~~~~ 399 (420)
T PRK08318 374 VIEEECVGCNLCAHVCPVE--GCITMGE 399 (420)
T ss_pred echhhCcccchHHhhCCCC--CCEEEec
Confidence 5667899999999999951 3666643
No 156
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=67.85 E-value=2.8 Score=44.01 Aligned_cols=30 Identities=13% Similarity=0.085 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCceEEEcccCCCCCCH
Q 012354 215 QVQALRSVEHHLNLEKLYVLGTNCVDNGTR 244 (465)
Q Consensus 215 QI~aLr~l~~~l~~e~L~~Igl~C~Gv~S~ 244 (465)
...|+.++++.+|++-.+.=+-.|=|.|..
T Consensus 179 ~~~a~v~vL~~~G~~v~~~~~~~CCG~p~~ 208 (397)
T TIGR03379 179 LGKDLVKVLNAMNIGVQLLEKEKCCGVPLI 208 (397)
T ss_pred HHHHHHHHHHHCCcEEEeCCCCCccCccHH
Confidence 556777777777765444335678777765
No 157
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=67.75 E-value=2.6 Score=40.46 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=23.0
Q ss_pred hhhhhhhhccccccC----CCCCCCCCCCCccCCccccccccc
Q 012354 40 VKLREDWRKRSKPIP----PGGTYPAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~----~~~~~~~k~lCtGCGaC~siCp~~ 78 (465)
+....||+.-+.... ........+-|..||+|-+.||.+
T Consensus 12 ~~v~~e~~~~~ve~~~~~~~e~~~~~l~~C~QCG~CT~sCPs~ 54 (195)
T COG1150 12 EDVSPEEKEEAVERTEEVKGEGRLDYLEGCYQCGTCTGSCPSG 54 (195)
T ss_pred cccChHHHHHHHHHHHHhcCchhhhhHhHhhccCcccCCCCCc
Confidence 446667774433221 111111244599999999999964
No 158
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=67.69 E-value=1.7 Score=49.22 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=28.7
Q ss_pred CCCCCccCCccccccc-ccccccceecCCC--------------------ccccccccccc
Q 012354 61 AKDHCSRCGLCDTYYI-AHVKDACAFLGDG--------------------MSRIEGLETVV 100 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp-~~~~~ai~f~~eG--------------------~~~c~~vCp~~ 100 (465)
+.+.|.-||.|+-+|- .....++.++.+| |+.|..+||+.
T Consensus 147 dp~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~n 207 (978)
T COG3383 147 DPNQCILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVN 207 (978)
T ss_pred cchheeehhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchh
Confidence 6778999999999996 2223444443322 78999999974
No 159
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=67.28 E-value=2.1 Score=42.35 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=13.4
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|..||+|.+.||.
T Consensus 142 ~~CI~Cg~C~s~CP~ 156 (234)
T COG0479 142 SECILCGCCTAACPS 156 (234)
T ss_pred hhccccchhhhhCCc
Confidence 359999999999995
No 160
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=66.05 E-value=2.2 Score=38.50 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=19.1
Q ss_pred CCCCCccCCcccccccccccccceecC
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
+.+.|.+||.|..+||. .|+.+..
T Consensus 43 d~~~C~~Cg~Cv~~CP~---~AI~~~~ 66 (132)
T TIGR02060 43 EPDMCWECYSCVKACPQ---GAIDVRG 66 (132)
T ss_pred CchhCccHHHHHHhCCc---CceEEEC
Confidence 34589999999999996 5777653
No 161
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=66.02 E-value=3 Score=41.82 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=19.0
Q ss_pred CCCCCCccCCcccccccccccccceec
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
+....|++||.|..+||. +|+.|.
T Consensus 239 i~~~~C~~Cg~Cv~~CP~---~Ai~~~ 262 (271)
T PRK09477 239 VTSGDCITCGRCIDVCSE---DVFNFT 262 (271)
T ss_pred eCcccCcChhHHHhhcCc---cceeec
Confidence 445579999999999996 567664
No 162
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=65.95 E-value=2.5 Score=38.18 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=13.6
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
+.|..||.|.++||.
T Consensus 2 ~~Ci~CG~C~~~CP~ 16 (144)
T TIGR03290 2 KACYQCGTCTGSCPS 16 (144)
T ss_pred ccccCCCCCcCcCCC
Confidence 479999999999995
No 163
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=64.97 E-value=3 Score=45.04 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=23.1
Q ss_pred CCCCCCCCccCCcccccccccccccceecCC
Q 012354 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~~~~ai~f~~e 88 (465)
..++.++|+||+.|..+||. .++.|+.+
T Consensus 209 V~ID~dkCiGCg~CV~ACPy---gAI~~n~~ 236 (492)
T TIGR01660 209 VLIDQDKCRGWRMCISGCPY---KKIYFNWK 236 (492)
T ss_pred EEEehhhccChHHHHHhCCC---CCcEecCC
Confidence 35678999999999999995 57888754
No 164
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=64.71 E-value=2.9 Score=45.16 Aligned_cols=39 Identities=5% Similarity=-0.100 Sum_probs=25.4
Q ss_pred CCCCCccCCcccccccccc-----ccccee--------------cCCCcccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHV-----KDACAF--------------LGDGMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~-----~~ai~f--------------~~eG~~~c~~vCp~ 99 (465)
...-|..||.|..+||-+. ..++.. .+|+|+.|.-+||.
T Consensus 372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~~d~~~~e~~~~~~C~EedCG~CsyVCPs 429 (448)
T PRK05352 372 SERAMVPIGNYERVMPLDILPTQLLRALIVGDTDEAQALGALELDEEDLALCTFVCPG 429 (448)
T ss_pred CCcceeecCcHhhcCCCCCCHHHHHHHHHcCCHHHHHHcCchhcCccccCCCccCCCC
Confidence 3456999999999999431 111111 23457888899985
No 165
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=64.62 E-value=3.2 Score=49.77 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=35.8
Q ss_pred CCCCcchHHHHHHHHhhhCCCcchh------hhhhhhhhhHhHHHHHHhh
Q 012354 388 QPAPKFVGNLIAFFINLVGPKGLEF------ARYSLDYHTIRNYLHVNRA 431 (465)
Q Consensus 388 ~~~P~~~~~~~~~l~~~~gp~glef------~r~~~~~~~~~~~~~~~~~ 431 (465)
+..=.|....+..|....+=||--| ++++.|--+|..|+..-..
T Consensus 1049 ~~~g~w~~~~~~~La~lk~LRgt~ld~fg~~~err~ER~li~~y~~~i~~ 1098 (1159)
T PRK13030 1049 RRFGPWMWPAFRLLARLKGLRGTWLDPFGRTAERRMERALIDDYEATLER 1098 (1159)
T ss_pred eecChhHHHHHHHHHHhhcccCCccCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 4556688888888888889899887 6789999999999885544
No 166
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=63.23 E-value=3.8 Score=38.76 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=18.1
Q ss_pred CCCccCCcccccccccccccceecC
Q 012354 63 DHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
..|++||.|..+||. .||.+..
T Consensus 73 ~~C~~Cg~C~~~CPt---~AI~~~~ 94 (181)
T PRK08222 73 GRCIYCGRCEEVCPT---RAIQLTN 94 (181)
T ss_pred CcCcCCCCcccccCc---CeEEecc
Confidence 489999999999996 5776653
No 167
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=60.55 E-value=3.5 Score=40.40 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=20.8
Q ss_pred CCCCCCCCccCCcccccccccccccceecC
Q 012354 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
..+..+.|++||.|...||. .++.+..
T Consensus 172 ~~i~~~~C~~Cg~C~~~CP~---~AI~~~~ 198 (234)
T TIGR02700 172 AFIRLLKCVGCGKCKEACPY---NAIHGGL 198 (234)
T ss_pred eEEchhhCCccchHHhhCCC---CceecCC
Confidence 34566789999999999996 4666653
No 168
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=60.24 E-value=4.6 Score=34.32 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=15.4
Q ss_pred CCCCCCccCCcccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~ 77 (465)
++.+.|++||.|..+||.
T Consensus 63 i~~~~C~~Cg~C~~~CP~ 80 (101)
T TIGR00402 63 FDNAECDFCGKCAEACPT 80 (101)
T ss_pred ecCccCcCccChhhHCCc
Confidence 445589999999999996
No 169
>PRK06273 ferredoxin; Provisional
Probab=60.11 E-value=4 Score=38.16 Aligned_cols=17 Identities=18% Similarity=0.602 Sum_probs=14.9
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
+...|++||.|..+||.
T Consensus 89 d~~kCi~Cg~C~~aCP~ 105 (165)
T PRK06273 89 DYEKCVYCLYCHDFCPV 105 (165)
T ss_pred ccccCcCCCCcchhCCH
Confidence 44589999999999996
No 170
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=60.10 E-value=5.1 Score=40.71 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCccCCcccccccccccccceecC
Q 012354 55 PGGTYPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 55 ~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
.|....+.+.|.|||.|..+||. .++.++.
T Consensus 116 ~G~V~id~dkCigC~~Cv~aCP~---~a~~~~~ 145 (283)
T TIGR01582 116 NGIVDFDHSKCIGCGYCIVGCPF---NIPRYDK 145 (283)
T ss_pred CCcEEEeHHHCCcchHHHhhCCC---CCcEEcC
Confidence 34446678899999999999995 4667754
No 171
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=60.05 E-value=4 Score=42.25 Aligned_cols=16 Identities=31% Similarity=0.899 Sum_probs=14.3
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
+.|++||.|.++||..
T Consensus 9 ~~Cv~Cg~C~~~CP~~ 24 (388)
T COG0247 9 DKCVHCGFCTNVCPSY 24 (388)
T ss_pred HhcCCCCcccCcCCCc
Confidence 4799999999999964
No 172
>PRK08764 ferredoxin; Provisional
Probab=60.00 E-value=4.3 Score=36.45 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=17.8
Q ss_pred CCCCCCccCCccccccccccccccee
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
...+.|++||.|..+||. .++.|
T Consensus 112 v~~~~C~~Cg~Cv~~CP~---~Ai~~ 134 (135)
T PRK08764 112 VIAPLCTGCELCVPACPV---DCIEL 134 (135)
T ss_pred ecCCcCcCccchhhhcCc---cceEe
Confidence 345689999999999996 45544
No 173
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=59.75 E-value=3.8 Score=31.01 Aligned_cols=15 Identities=27% Similarity=0.758 Sum_probs=9.3
Q ss_pred CCccCCccccccccc
Q 012354 64 HCSRCGLCDTYYIAH 78 (465)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (465)
.|++||.|...||..
T Consensus 1 ~C~~Cg~C~~~CP~~ 15 (61)
T PF13534_consen 1 ACTQCGYCVPACPSY 15 (61)
T ss_dssp T----STTGGGSHHH
T ss_pred CCCCCCcCcccCCCc
Confidence 499999999999954
No 174
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=59.64 E-value=3.1 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=20.1
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
++.+.|.+||+|..+||. .|+.|..
T Consensus 327 Id~~~Ci~CGaCV~aCP~---~AI~~~~ 351 (391)
T TIGR03287 327 LNTEDCFGCGYCAEICPG---GAFEVNL 351 (391)
T ss_pred eChHhCcChHHHHhhCCc---cceEEeC
Confidence 456689999999999996 5777654
No 175
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=59.10 E-value=4 Score=43.20 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCCccCCcccccccccccccc----eecCC----------Cccccccccccc
Q 012354 63 DHCSRCGLCDTYYIAHVKDAC----AFLGD----------GMSRIEGLETVV 100 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~~~~ai----~f~~e----------G~~~c~~vCp~~ 100 (465)
+.|.+|..|...||.- .++ .+.+. .|+.|...||..
T Consensus 33 ~iC~~Cr~C~~~Cpvf--P~l~~r~~~~~~d~~~~a~~C~~Cg~C~~~CP~a 82 (389)
T PRK15033 33 QICNACRYCEGFCAVF--PAMTRRLEFGKADIHYLANLCHNCGACLHACQYA 82 (389)
T ss_pred HhCCCCCCccccCCCc--hhhhhhhcCChhhhHHHHHhCcCcccccccCcCC
Confidence 4799999999999831 222 12211 278899999983
No 176
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=58.70 E-value=5.4 Score=47.83 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=32.6
Q ss_pred CCCCcchHHHHHHHHhhhCCCcch---hhhh---hhhhhhHhHHHHHHh
Q 012354 388 QPAPKFVGNLIAFFINLVGPKGLE---FARY---SLDYHTIRNYLHVNR 430 (465)
Q Consensus 388 ~~~P~~~~~~~~~l~~~~gp~gle---f~r~---~~~~~~~~~~~~~~~ 430 (465)
+..-.|+.+.+..|.+..+=||-- |++. +.|=.+|..|.-+-.
T Consensus 1056 ~~~g~w~~~~~~~la~~k~lRgt~~d~fg~~~err~er~li~~y~~~~~ 1104 (1165)
T PRK09193 1056 RAFGPWMMPAFRLLAKLKGLRGTALDPFGYTEERRTERALIAEYEALVD 1104 (1165)
T ss_pred hcCCchHHHHHHHHHhcccccCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 556679999999998888888887 7766 677777777765543
No 177
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=58.10 E-value=4.8 Score=41.76 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=21.5
Q ss_pred CCCCCCCCCCccCCcccccccccccccceec
Q 012354 56 GGTYPAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 56 ~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
|....+.+.|.||+.|..+||. .++.|.
T Consensus 136 g~V~id~dkCigCg~Cv~aCP~---gai~~~ 163 (328)
T PRK10882 136 GIVHYDKDVCTGCRYCMVACPF---NVPKYD 163 (328)
T ss_pred CcccCCHHHcCcccHHHHhCCc---cceecc
Confidence 4455677899999999999995 456664
No 178
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=57.95 E-value=4 Score=42.51 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=20.7
Q ss_pred CCCCCCCCCCccCCcccccccccccccce
Q 012354 56 GGTYPAKDHCSRCGLCDTYYIAHVKDACA 84 (465)
Q Consensus 56 ~~~~~~k~lCtGCGaC~siCp~~~~~ai~ 84 (465)
|...++.+.|.+||.|..+||. .++.
T Consensus 207 ~~~~id~~~Ci~Cg~Ci~~CP~---~a~~ 232 (341)
T TIGR02066 207 KSLEVDVEKCIYCGNCYTMCPA---MPIF 232 (341)
T ss_pred CceeeccccCCcCCchHHhCch---hhcc
Confidence 4456777899999999999995 4554
No 179
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=57.85 E-value=3 Score=41.82 Aligned_cols=24 Identities=21% Similarity=0.618 Sum_probs=18.8
Q ss_pred CCCCCCccCCcccccccccccccceec
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.....|.+||.|..+||. .|+.+.
T Consensus 79 ~~~~~C~~Cg~C~~~CP~---~Ai~~~ 102 (295)
T TIGR02494 79 IRREKCTHCGKCTEACPS---GALSIV 102 (295)
T ss_pred echhhcCchhHhhccCcH---hHHhhh
Confidence 344589999999999996 567664
No 180
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=56.90 E-value=3.9 Score=38.91 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=18.2
Q ss_pred CCCCccCCcccccccccccccceec
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.++||||++|+..||.+ +|.|.
T Consensus 144 ~dlCTGC~lCva~CPtd---ci~m~ 165 (198)
T COG2878 144 ADLCTGCDLCVAPCPTD---CIEMQ 165 (198)
T ss_pred HHHhcCCCcccCCCCCC---ceeee
Confidence 67899999999999974 55554
No 181
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=56.69 E-value=5.2 Score=30.88 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=12.5
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|+|||+|..+||-
T Consensus 52 ~~~~~C~~C~~vCP~ 66 (67)
T PF13484_consen 52 WDCYGCGICQKVCPF 66 (67)
T ss_pred CCccccchhhccCCC
Confidence 345799999999994
No 182
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=56.45 E-value=4.2 Score=48.18 Aligned_cols=16 Identities=25% Similarity=0.758 Sum_probs=14.4
Q ss_pred CCCCccCCcccccccc
Q 012354 62 KDHCSRCGLCDTYYIA 77 (465)
Q Consensus 62 k~lCtGCGaC~siCp~ 77 (465)
.++|++||.|+.+||.
T Consensus 925 ~~~C~~CG~C~~~CP~ 940 (1019)
T PRK09853 925 DAMCNECGNCAQFCPW 940 (1019)
T ss_pred CccCccccchhhhCCC
Confidence 4689999999999995
No 183
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=56.36 E-value=3.2 Score=38.88 Aligned_cols=18 Identities=17% Similarity=0.617 Sum_probs=15.3
Q ss_pred CCCCCCccCCcccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~ 77 (465)
++.++|+||++|..+||.
T Consensus 7 ~d~~~C~gC~~C~~aC~~ 24 (181)
T PRK10330 7 ADASKCIGCRTCEVACVV 24 (181)
T ss_pred eCcccCcCccHHHHHHHH
Confidence 455599999999999994
No 184
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=55.35 E-value=6.7 Score=47.07 Aligned_cols=44 Identities=14% Similarity=0.134 Sum_probs=34.1
Q ss_pred CCCCcchHHHHHHHHhhhCCCcch---hhh---hhhhhhhHhHHHHHHhh
Q 012354 388 QPAPKFVGNLIAFFINLVGPKGLE---FAR---YSLDYHTIRNYLHVNRA 431 (465)
Q Consensus 388 ~~~P~~~~~~~~~l~~~~gp~gle---f~r---~~~~~~~~~~~~~~~~~ 431 (465)
+..-.|+.+.+..|.+..+=||-- |++ ++.|=.+|..|.-+-..
T Consensus 1079 ~~~g~w~~~~~~~La~~k~lRgt~~D~Fg~~~eRr~er~li~~y~~~~~~ 1128 (1186)
T PRK13029 1079 VRYGPWMLPAFRVLARLKGLRGTAFDVFGYTEERRAERALIAEYRALLDE 1128 (1186)
T ss_pred eecCchHHHHHHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456679999999999999999988 777 67777777777655433
No 185
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=55.01 E-value=4.8 Score=44.82 Aligned_cols=44 Identities=11% Similarity=0.165 Sum_probs=29.5
Q ss_pred CCCCCCCCccCCccccccccc-ccccceecCC-----------------Ccccccccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYIAH-VKDACAFLGD-----------------GMSRIEGLETVVH 101 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~-~~~ai~f~~e-----------------G~~~c~~vCp~~~ 101 (465)
...+.++|.-||.|+.+|-.- ...++.|.+- -|+.|..+||.--
T Consensus 137 i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GA 198 (603)
T TIGR01973 137 IKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGA 198 (603)
T ss_pred eEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCccc
Confidence 345778999999999999521 1223444322 2789999999743
No 186
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=54.77 E-value=4.9 Score=41.82 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=14.4
Q ss_pred CCCCccCCcccccccc
Q 012354 62 KDHCSRCGLCDTYYIA 77 (465)
Q Consensus 62 k~lCtGCGaC~siCp~ 77 (465)
...|.|||.|..+||.
T Consensus 300 ~~~CvgCGrC~~~CP~ 315 (334)
T TIGR02910 300 YHMCVGCGRCDDICPE 315 (334)
T ss_pred ccccCCcCchhhhCCC
Confidence 5579999999999996
No 187
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=54.71 E-value=5.4 Score=40.68 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=29.8
Q ss_pred CCCCCCccCCccccccccc-ccccceecCC------------------CccccccccccccCCCC
Q 012354 60 PAKDHCSRCGLCDTYYIAH-VKDACAFLGD------------------GMSRIEGLETVVHGRGR 105 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~-~~~ai~f~~e------------------G~~~c~~vCp~~~~r~~ 105 (465)
.+.++|.-||-|+.+|..- ...++.|.+- |+..|.++||.--....
T Consensus 209 ~D~nKCIlCgRCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~ 273 (297)
T PTZ00305 209 VVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLG 273 (297)
T ss_pred ecCCcCcCccHHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccC
Confidence 4567999999999999631 2234554322 34568899997554433
No 188
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=54.42 E-value=68 Score=28.57 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=42.3
Q ss_pred CchHHHHHHHHcCCCEEEEEecC------hHHHHH-------HHHHHhcCCCc--eEEEcccC-----CCCCCHHHHHHH
Q 012354 191 PNLNTLALVEAAGVKRLLFCGVG------CQVQAL-------RSVEHHLNLEK--LYVLGTNC-----VDNGTREGLDKF 250 (465)
Q Consensus 191 ~~l~~l~ei~~~~~kkVafvGtP------CQI~aL-------r~l~~~l~~e~--L~~Igl~C-----~Gv~S~~~~~~~ 250 (465)
.+...++.+++.|.+-+.++..+ .++.++ +.+.+.++... .|...+.+ ..-|+++.|...
T Consensus 31 g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~ 110 (147)
T TIGR01656 31 GAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEA 110 (147)
T ss_pred ChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHH
Confidence 34556666777765545555555 333433 33334444431 22222211 136999999999
Q ss_pred HHHhCCCCCceEEE
Q 012354 251 LKAASSEPETVLHY 264 (465)
Q Consensus 251 L~~~~~~~~~I~~~ 264 (465)
++.++.+++++..+
T Consensus 111 ~~~~~~~~~e~i~I 124 (147)
T TIGR01656 111 LKRLGVDASRSLVV 124 (147)
T ss_pred HHHcCCChHHEEEE
Confidence 99998887776554
No 189
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=54.16 E-value=5.4 Score=39.78 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=14.8
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
....|..||.|.++||.
T Consensus 155 ~~~~CI~CG~C~saCP~ 171 (250)
T PRK07570 155 DAAACIGCGACVAACPN 171 (250)
T ss_pred CccccCCCcccccccCC
Confidence 45569999999999996
No 190
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=54.05 E-value=5.4 Score=43.10 Aligned_cols=17 Identities=6% Similarity=0.046 Sum_probs=14.1
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
...-|..||.|..+||-
T Consensus 371 ~~~aCI~CG~C~~vCPm 387 (447)
T TIGR01936 371 GERAMIPIGIYERVMPL 387 (447)
T ss_pred CccceeECChHhhcCCC
Confidence 34459999999999994
No 191
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=53.79 E-value=5.3 Score=38.72 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=14.2
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
..|+.||.|..+||++
T Consensus 194 ~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 194 WRCTTCMNCSEVCPKG 209 (220)
T ss_pred ccCccccccccccCCC
Confidence 4699999999999964
No 192
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=53.64 E-value=5.2 Score=44.12 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=23.3
Q ss_pred CCccCCccccccccccccc------ceecC---CCcccccccccc
Q 012354 64 HCSRCGLCDTYYIAHVKDA------CAFLG---DGMSRIEGLETV 99 (465)
Q Consensus 64 lCtGCGaC~siCp~~~~~a------i~f~~---eG~~~c~~vCp~ 99 (465)
.|.+|+.|..+||.+.... +.++. .+|+.|.++||.
T Consensus 511 ~c~~C~~C~~~Cp~~ai~~~~~~~~~~i~~~~C~~Cg~C~~~CP~ 555 (564)
T PRK12771 511 NCFECDNCYGACPQDAIIKLGPGRRYHFDYDKCTGCHICADVCPC 555 (564)
T ss_pred cccccchhhhhCChhheeeecCCceEEEecccCcChhHHHhhcCc
Confidence 3455599999999642111 22332 368899999995
No 193
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=53.40 E-value=5.3 Score=39.73 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=13.4
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|..||+|.++||.
T Consensus 152 ~~CI~CG~C~saCP~ 166 (249)
T PRK08640 152 SKCMTCGCCLEACPN 166 (249)
T ss_pred hhccCcCcccccCCC
Confidence 459999999999994
No 194
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=52.64 E-value=7.7 Score=40.10 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=13.3
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|..||+|.++||.
T Consensus 152 ~~Ci~CG~C~s~CP~ 166 (329)
T PRK12577 152 GNCILCGACYSECNA 166 (329)
T ss_pred hhCcccCcccccCCC
Confidence 459999999999984
No 195
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=52.42 E-value=5.4 Score=43.97 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=14.9
Q ss_pred hhhccccccCCCCCCCCCCCCccCCccc
Q 012354 45 DWRKRSKPIPPGGTYPAKDHCSRCGLCD 72 (465)
Q Consensus 45 ~~~~~~~~~~~~~~~~~k~lCtGCGaC~ 72 (465)
+|.+-+..+.+.........|.+||.|.
T Consensus 486 ~f~~~~~~~~~~~~~~~~~rCl~C~~c~ 513 (564)
T PRK12771 486 DFDEVLGGLTEEEARQEAARCLSCGNCF 513 (564)
T ss_pred ChhhhhccCChhhhhhhcccCccccccc
Confidence 4444444444444444556677777663
No 196
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=52.35 E-value=5.7 Score=41.50 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=14.0
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
..|+|||.|..+||..
T Consensus 307 ~~CvgCGrC~~~CP~~ 322 (344)
T PRK15055 307 HMCVGCGRCDDRCPEY 322 (344)
T ss_pred hhCcCcCccccccCCC
Confidence 3699999999999963
No 197
>PRK09898 hypothetical protein; Provisional
Probab=52.19 E-value=7.2 Score=37.51 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=29.8
Q ss_pred CCCCCCCCccCCcccccccccccccceecC--------CCcccccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG--------DGMSRIEGLETV 99 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~~~~ai~f~~--------eG~~~c~~vCp~ 99 (465)
...+.+.|.+|+.|..+||. .++.++. .+|+.|.+.||.
T Consensus 149 v~vd~~~CigC~~C~~aCP~---~ai~~~~~~~~~~kC~~Cg~Cv~~CP~ 195 (208)
T PRK09898 149 ITVDHKRCIGCSACTTACPW---MMATVNTESKKSSKCVLCGECANACPT 195 (208)
T ss_pred EEeccccCCCcCcccccCCC---CCCEecCCCCcCCcCcChHHHHHhCCc
Confidence 34567889999999999995 4566653 247888899995
No 198
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=51.86 E-value=5.7 Score=38.51 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=14.8
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
-..|..||+|.++||..
T Consensus 137 ~~~Ci~CG~C~~~CP~~ 153 (220)
T TIGR00384 137 LSGCILCGCCYSSCPAF 153 (220)
T ss_pred hhhccccccccccCCCC
Confidence 36799999999999964
No 199
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=51.13 E-value=6.2 Score=35.65 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=13.6
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|+.||.|..+||.
T Consensus 46 ~~C~~Cg~C~~~CP~ 60 (144)
T TIGR03290 46 WMCTTCYTCQERCPR 60 (144)
T ss_pred CcCcCcCchhhhcCC
Confidence 369999999999995
No 200
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=50.78 E-value=7 Score=44.60 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=27.5
Q ss_pred hhhhhhhhccccccCCCCCC-CCCCCCccCCccccccccc
Q 012354 40 VKLREDWRKRSKPIPPGGTY-PAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~-~~k~lCtGCGaC~siCp~~ 78 (465)
+.+.-||+...-.+-.+... +....|-.||.|+++||.+
T Consensus 168 eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~n 207 (978)
T COG3383 168 EALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVN 207 (978)
T ss_pred eEEEeecccCCcceecCCCCccccccccccCccceecchh
Confidence 55777887665555555433 3455699999999999953
No 201
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=50.66 E-value=6.5 Score=45.47 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=27.2
Q ss_pred CCCCCCCccCCccccccccc-ccccceecCC-----------------Ccccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAH-VKDACAFLGD-----------------GMSRIEGLETV 99 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~-~~~ai~f~~e-----------------G~~~c~~vCp~ 99 (465)
..+.++|.-|+-|+.+|-.- ...++.|.+- -|+.|.++||.
T Consensus 146 ~~d~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~ 204 (797)
T PRK07860 146 LLDRERCVLCARCTRFSDQIAGDPFIDLQERGALQQVGIYEGEPFQSYFSGNTVQICPV 204 (797)
T ss_pred eecccccccCcHHHHHHHhhcCCcEEEeeecCCCCEEecCCCCCcCccccCCchhhCCc
Confidence 34678999999999999521 1223433221 16788999996
No 202
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=50.32 E-value=7.4 Score=40.18 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=22.2
Q ss_pred CCCCCCCCccCCcccccccccccccceecC
Q 012354 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
..++.+.|.|||.|..+||. .++.|+.
T Consensus 157 V~ID~ekCiGCg~Cv~ACPy---gAi~~n~ 183 (321)
T TIGR03478 157 VLVDQERCKGYRYCVEACPY---KKVYFNP 183 (321)
T ss_pred EEECHHHCcchHHHHHhCCC---CCcEecC
Confidence 35678899999999999995 5777765
No 203
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=49.70 E-value=6.4 Score=45.24 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=27.3
Q ss_pred CCCCCCCccCCccccccccc-ccccceecCCC-----------------cccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAH-VKDACAFLGDG-----------------MSRIEGLETV 99 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~-~~~ai~f~~eG-----------------~~~c~~vCp~ 99 (465)
..+.+.|.-||.|+.+|-.- ...++.|.+-| |+.|.++||.
T Consensus 140 ~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~ 198 (776)
T PRK09129 140 STEMTRCIHCTRCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPV 198 (776)
T ss_pred eecccccccCcHHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCc
Confidence 34678899999999999520 12344443222 6788899996
No 204
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=49.13 E-value=8.4 Score=40.61 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=24.4
Q ss_pred CCCccCCcccccccccccccce----ecC----------CCcccccccccccc
Q 012354 63 DHCSRCGLCDTYYIAHVKDACA----FLG----------DGMSRIEGLETVVH 101 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~~~~ai~----f~~----------eG~~~c~~vCp~~~ 101 (465)
+.|.+|+.|...||.- .++. +.+ ..|+.|...||..-
T Consensus 14 ~iC~~C~~C~~~Cpvf--Pa~~~~~~~~~~d~~~la~lChnC~~C~~~CPy~p 64 (372)
T TIGR02484 14 NLCNSCGYCTGLCAVF--PAAQGRPDLTRGDLRHLAHLCHDCQSCWHDCQYAP 64 (372)
T ss_pred HhCcCcCCccccCCCc--cccccccccCHHHHHHHHHHCcCcccccccCcCCC
Confidence 4799999999999841 2221 101 12778889999743
No 205
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=48.97 E-value=4.5 Score=44.14 Aligned_cols=15 Identities=33% Similarity=0.829 Sum_probs=13.4
Q ss_pred CCccCCccccccccc
Q 012354 64 HCSRCGLCDTYYIAH 78 (465)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (465)
-|..||.|+++||.+
T Consensus 366 sCi~C~~C~d~CP~~ 380 (529)
T COG4656 366 SCIRCSLCADACPVN 380 (529)
T ss_pred ccccHHHHHHhCccc
Confidence 599999999999954
No 206
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=48.76 E-value=7.9 Score=38.36 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=18.1
Q ss_pred CCC-CCccCCcccccccccccccceec
Q 012354 61 AKD-HCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 61 ~k~-lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.++ .|.|||.|.+.||. .++.+.
T Consensus 187 ~qg~~C~G~~TC~A~CP~---~ai~c~ 210 (247)
T COG1941 187 EQGLPCMGCGTCAASCPS---RAIPCR 210 (247)
T ss_pred cCCCcccCchhhhccCCc---cCCccc
Confidence 455 89999999999996 456554
No 207
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=47.95 E-value=8.7 Score=37.52 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=20.8
Q ss_pred CCCCCCCCccCCcccccccccccccceecC
Q 012354 58 TYPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
..++.+.|++||.|..+||. .++.++.
T Consensus 120 v~id~~~C~~C~~C~~aCP~---~A~~~~~ 146 (225)
T TIGR03149 120 VDVHKDLCVGCQYCIAACPY---RVRFIHP 146 (225)
T ss_pred EEechhhCCcchHHHHhCCC---CCcEecC
Confidence 34567899999999999996 4555554
No 208
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=47.93 E-value=7.4 Score=39.38 Aligned_cols=16 Identities=31% Similarity=0.682 Sum_probs=14.3
Q ss_pred CCCCccCCcccccccc
Q 012354 62 KDHCSRCGLCDTYYIA 77 (465)
Q Consensus 62 k~lCtGCGaC~siCp~ 77 (465)
-..|..||+|.++||.
T Consensus 151 ~~~CI~CG~C~~~CP~ 166 (279)
T PRK12576 151 FAQCIWCGLCVSACPV 166 (279)
T ss_pred chhCcccCcccccCCC
Confidence 4679999999999995
No 209
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=47.33 E-value=7.7 Score=38.44 Aligned_cols=15 Identities=33% Similarity=0.778 Sum_probs=13.7
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|..||+|.++||.
T Consensus 147 ~~CI~Cg~C~saCP~ 161 (244)
T PRK12385 147 SGCINCGLCYAACPQ 161 (244)
T ss_pred HhcCcCccccCcCcC
Confidence 479999999999995
No 210
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=47.09 E-value=10 Score=37.20 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=18.8
Q ss_pred CCCCCccCCcccccccccccccceecC
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
....|.+||.|..+||. .|+....
T Consensus 188 ~~~~C~~Cg~Cv~vCP~---gAL~~~~ 211 (234)
T PRK07569 188 TSETCTSCGKCVQACPT---GAIFRKG 211 (234)
T ss_pred ccccccchHHHHHhCCC---CcEEecC
Confidence 34589999999999996 5765543
No 211
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=46.05 E-value=9.9 Score=39.92 Aligned_cols=18 Identities=22% Similarity=0.595 Sum_probs=15.7
Q ss_pred CCCCCCccCCcccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~ 77 (465)
++.+.|.+||.|..+||.
T Consensus 47 id~~~C~~Cg~Cv~~CP~ 64 (374)
T TIGR02512 47 LDESNCIGCGQCSLVCPV 64 (374)
T ss_pred cCcccCcCccCHHHhCCC
Confidence 455689999999999996
No 212
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=45.81 E-value=28 Score=36.45 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCeeEEEEEeeC--CCCCCceeEEEEcCHHHHHhhcCCCCcccCchHH--------------HHHHHHc
Q 012354 139 VTTIAIEMLKTGMVEAVVCVQSD--PDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNT--------------LALVEAA 202 (465)
Q Consensus 139 ~TaLa~~lLe~G~VdgVV~~~~~--~dd~~~~~~~la~t~eel~~~~GSKY~qS~~l~~--------------l~ei~~~ 202 (465)
+..|+..|.++..|-|-+..... +.+.-.+...-+++.+||.--..+- +|+---. +.+....
T Consensus 10 l~~ll~~L~~~y~v~aP~~~~~~g~~~~td~i~f~~i~~~~el~~~~~~~--~s~K~~lfP~~E~L~~f~~~~~~~~~~~ 87 (344)
T PRK15055 10 FNLLLKRLKKEYKIYAPKRFEGKGRFSDTDNIRYGEINSIEDIVFDEKSD--FSPKEVILPITQTLFYFTEDEIKEAKTD 87 (344)
T ss_pred HHHHHHHHHhCCEEEeeEEECCCCcccccceEEEEecCChhhcccCCCCC--CCchhhccCCcceeEEEECCceeecCCC
Confidence 55677777777554333221110 0111145666678888886443232 2221111 1111112
Q ss_pred CCCEEEEEecChHHHHHHHHHH-hc--C----------CCceEEEcccCCC
Q 012354 203 GVKRLLFCGVGCQVQALRSVEH-HL--N----------LEKLYVLGTNCVD 240 (465)
Q Consensus 203 ~~kkVafvGtPCQI~aLr~l~~-~l--~----------~e~L~~Igl~C~G 240 (465)
..+.|+| .-||+++|+..+.+ ++ + .+++++|++.|..
T Consensus 88 ~~~~vif-vR~CDl~ai~~lD~vfl~~g~~~D~yY~~rRe~~~iV~~~C~~ 137 (344)
T PRK15055 88 EKKILIF-LRSCDINAIKRLDYIYLKNGNEEDYYYKRLREKVKFVLMECEE 137 (344)
T ss_pred CCcEEEE-EeccchhHHHHHHHHHhcCCCCCCHHHHHHHhCcEEEEEeCCC
Confidence 2355666 99999999998855 32 2 2579999999976
No 213
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=45.31 E-value=9 Score=38.21 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=13.8
Q ss_pred CCccCCccccccccc
Q 012354 64 HCSRCGLCDTYYIAH 78 (465)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (465)
.|+.||.|..+||++
T Consensus 213 ~C~~Cg~Cs~VCPk~ 227 (250)
T PRK07570 213 NCTNTGECEAVCPKG 227 (250)
T ss_pred cCcccCccccccCCC
Confidence 699999999999974
No 214
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=44.97 E-value=8.5 Score=38.99 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=13.0
Q ss_pred CCccCCcccccccc
Q 012354 64 HCSRCGLCDTYYIA 77 (465)
Q Consensus 64 lCtGCGaC~siCp~ 77 (465)
.|..||+|.++||.
T Consensus 188 ~CI~CG~C~saCPv 201 (276)
T PLN00129 188 ECILCACCSTSCPS 201 (276)
T ss_pred hCccccccccccCC
Confidence 69999999999994
No 215
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=43.96 E-value=8.3 Score=38.11 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=13.7
Q ss_pred CCCCccCCcccccccc
Q 012354 62 KDHCSRCGLCDTYYIA 77 (465)
Q Consensus 62 k~lCtGCGaC~siCp~ 77 (465)
-..|..||+|.++||.
T Consensus 148 ~~~CI~Cg~C~saCP~ 163 (239)
T PRK13552 148 LDRCIECGCCVAACGT 163 (239)
T ss_pred hhhccccchhHhhCCC
Confidence 3459999999999994
No 216
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=43.88 E-value=74 Score=33.18 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCeeEEEEE-ee-CCCCCCceeEEEEcCHHHHHhhcCCCCcccCchHH--------------HHHHHHc
Q 012354 139 VTTIAIEMLKTGMVEAVVCV-QS-DPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNT--------------LALVEAA 202 (465)
Q Consensus 139 ~TaLa~~lLe~G~VdgVV~~-~~-~~dd~~~~~~~la~t~eel~~~~GSKY~qS~~l~~--------------l~ei~~~ 202 (465)
+..++..|.++..|-|-+.. +. .+.|.-.....-+++.+||.--..+. +|+---. +.+....
T Consensus 10 l~~ll~~L~~~y~v~aPv~~~~~g~~~~~~~i~f~~i~~~~el~~~~~~~--~spK~~lfP~~E~L~~f~~~~~~~~~~~ 87 (334)
T TIGR02910 10 FNLLLQKLNKDYKVYAPKALFGKGTFSDTDNIRYQEISGVEEIEFHEKSH--FSPKEIILPITETLFYFTEDTVQEAETD 87 (334)
T ss_pred HHHHHHHHHhCCEEEeeEEEcCCCcccCCCeEEEEEcCChhhcccCCCCC--CCchhhccCCcceeEEEEcCcccccCCC
Confidence 45677777777554333221 00 01112245666678888886443332 2221111 1111112
Q ss_pred CCCEEEEEecChHHHHHHHHHHhc-C-----------CCceEEEcccCCC
Q 012354 203 GVKRLLFCGVGCQVQALRSVEHHL-N-----------LEKLYVLGTNCVD 240 (465)
Q Consensus 203 ~~kkVafvGtPCQI~aLr~l~~~l-~-----------~e~L~~Igl~C~G 240 (465)
..+.|+| .-||+++|+..+.+-+ . .+++++|++.|..
T Consensus 88 ~~~~vif-vRpCDl~ai~~lD~vfl~~~~~D~yY~~rRe~~~iV~~~C~~ 136 (334)
T TIGR02910 88 KKNIIIF-LRSCDINAVKRLDYIYLKNGNEDYYYKRLREKVKFVLIECEE 136 (334)
T ss_pred CCcEEEE-EeccchhHHHHHHHHhcCCCCCCHHHHHHHhCcEEEEEeCCC
Confidence 2245666 9999999999885521 1 2589999999986
No 217
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=43.83 E-value=9.3 Score=38.16 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.8
Q ss_pred CCCCccCCcccccccc
Q 012354 62 KDHCSRCGLCDTYYIA 77 (465)
Q Consensus 62 k~lCtGCGaC~siCp~ 77 (465)
-..|..||+|.++||.
T Consensus 141 ~~~CI~CG~C~s~CPv 156 (251)
T PRK12386 141 FRKCIECFLCQNVCHV 156 (251)
T ss_pred hhhcccCCcccCcCCc
Confidence 3459999999999994
No 218
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=43.48 E-value=9.5 Score=43.52 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=15.1
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
....|++||+|..+||.+
T Consensus 407 ~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 407 NLFDCIECGACAYVCPSN 424 (695)
T ss_pred ChhhccccCcccccCCCC
Confidence 345799999999999964
No 219
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=42.79 E-value=11 Score=37.34 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCCCCCCCCCccCCcccccccccccccceecCC
Q 012354 56 GGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 56 ~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~e 88 (465)
|...++.+.|.||+.|..+||. .++.++.+
T Consensus 123 G~v~id~~~CigC~~Cv~aCP~---~Ai~~~~~ 152 (244)
T PRK14993 123 GIVVVDNKRCVGCAYCVQACPY---DARFINHE 152 (244)
T ss_pred CCEEEcHHHCCCHHHHHHhcCC---CCCEEeCC
Confidence 4345677899999999999996 56777543
No 220
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=42.64 E-value=10 Score=37.02 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=14.2
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
..|+.||.|..+||+.
T Consensus 198 ~~C~~Cg~C~~~CP~g 213 (232)
T PRK05950 198 FRCHTIMNCVEVCPKG 213 (232)
T ss_pred ccCcCcCCcCccccCC
Confidence 4799999999999964
No 221
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=42.53 E-value=9.3 Score=40.50 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.6
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
--++|.+||.|...||.
T Consensus 65 ~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 65 LANLCHNCGACLHACQY 81 (389)
T ss_pred HHHhCcCcccccccCcC
Confidence 34589999999999994
No 222
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=42.46 E-value=13 Score=34.15 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=22.6
Q ss_pred CCCCCCCCCCccCCcccccccccccccceecC
Q 012354 56 GGTYPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 56 ~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
|...++.+.|.+||.|..+||. .++.+..
T Consensus 88 ~~~~i~~~~C~~C~~C~~aCP~---~ai~~~~ 116 (161)
T TIGR02951 88 GLVLVDQDKCIGCRYCVWACPY---GAPQYDP 116 (161)
T ss_pred CcEEECHHhCCCchHHHhhCCC---CCcEEcC
Confidence 4445678899999999999995 4666654
No 223
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=42.20 E-value=9.7 Score=38.52 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=14.2
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
..|+.||.|..+||+.
T Consensus 206 ~~C~~Cg~C~~~CP~~ 221 (279)
T PRK12576 206 WRCTYCYSCSNVCPRD 221 (279)
T ss_pred CcccCcccchhhCCCC
Confidence 4799999999999963
No 224
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=41.76 E-value=1.6e+02 Score=25.51 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=46.0
Q ss_pred CchHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 012354 191 PNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 265 (465)
Q Consensus 191 ~~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~~ 265 (465)
.+...+.++.+.+.+-+++++.+ ...++...++++. +.+++.+-.-..-|.+..++..++.+++.|+++..+.
T Consensus 81 ~~~~~L~~l~~~~~~~~i~Sn~~--~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vg 157 (176)
T PF13419_consen 81 GVRELLERLKAKGIPLVIVSNGS--RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVG 157 (176)
T ss_dssp THHHHHHHHHHTTSEEEEEESSE--HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEE
T ss_pred hhhhhhhhcccccceeEEeecCC--cccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEe
Confidence 34456666766665555555553 4555555555553 3344443333356888999999999999888876553
No 225
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=41.67 E-value=12 Score=38.87 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.7
Q ss_pred CCCCCccCCcccccccc
Q 012354 61 AKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~ 77 (465)
+.+.|.+||+|..+||.
T Consensus 51 d~~~C~~Cg~C~~vCP~ 67 (341)
T PRK09326 51 APNVCEGCLTCSRICPV 67 (341)
T ss_pred CcCcCcCcCchhhhCCC
Confidence 34589999999999995
No 226
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=41.42 E-value=10 Score=37.37 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=13.4
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|..||+|.++||.
T Consensus 144 ~~CI~CG~C~s~CP~ 158 (235)
T PRK12575 144 YECILCACCSTACPS 158 (235)
T ss_pred hhCcccccccccccC
Confidence 359999999999995
No 227
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=40.56 E-value=10 Score=40.35 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=17.1
Q ss_pred CCCCCccCCccccccccccccccee
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
+.+.|.+|+.|..+||. .+|..
T Consensus 37 ~~~~C~~C~~C~~~CP~---~AI~~ 58 (411)
T TIGR03224 37 KADVCNGCMACVSPCPT---GAIDN 58 (411)
T ss_pred CcccCcCHHHHHhhcCc---cccee
Confidence 44589999999999996 35543
No 228
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=40.30 E-value=11 Score=39.68 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.9
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
-..|+.||+|..+||..
T Consensus 72 ~~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 72 LDRCLTCRNCETTCPSG 88 (407)
T ss_pred cccCccccchhhhCCCC
Confidence 46899999999999964
No 229
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=39.12 E-value=12 Score=36.57 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=14.0
Q ss_pred CCCCccCCcccccccc
Q 012354 62 KDHCSRCGLCDTYYIA 77 (465)
Q Consensus 62 k~lCtGCGaC~siCp~ 77 (465)
-..|..||.|.++||.
T Consensus 140 ~~~Ci~Cg~C~~~CP~ 155 (232)
T PRK05950 140 LYECILCACCSTSCPS 155 (232)
T ss_pred HHhccccccccccCCc
Confidence 3479999999999995
No 230
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=38.95 E-value=13 Score=37.07 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=14.1
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
-.|+.||.|..+||++
T Consensus 209 ~~C~~Cg~C~~vCPkg 224 (249)
T PRK08640 209 ADCGNAQNCVRVCPKG 224 (249)
T ss_pred eCCcCcCcccccCCCC
Confidence 4699999999999974
No 231
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=38.92 E-value=12 Score=43.40 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.0
Q ss_pred CCCCCCCCccCCccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYI 76 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp 76 (465)
...+.++|..||.|+.+|+
T Consensus 136 I~~D~~rCI~C~RCVr~C~ 154 (819)
T PRK08493 136 INYDPSLCIVCERCVTVCK 154 (819)
T ss_pred EEechhhcccccHHHhhCc
Confidence 3446679999999999998
No 232
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=38.82 E-value=11 Score=40.72 Aligned_cols=20 Identities=20% Similarity=0.617 Sum_probs=18.0
Q ss_pred CCCCCCCCccCCcccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp~ 77 (465)
.++...+|.|||.|+--||-
T Consensus 45 ~~ise~lCigcgicvkkcpf 64 (592)
T KOG0063|consen 45 AFISEELCIGCGICVKKCPF 64 (592)
T ss_pred chhhHhhhccccceeeccCc
Confidence 57788999999999999995
No 233
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=38.01 E-value=15 Score=42.65 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=16.8
Q ss_pred CCCCccCCccccccccccccccee
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
...|..||.|+++||. .|+..
T Consensus 203 ~~~C~~CG~Cv~VCPv---GAL~~ 223 (819)
T PRK08493 203 TLDCSFCGECIAVCPV---GALSS 223 (819)
T ss_pred cccccccCcHHHhCCC---Ccccc
Confidence 3579999999999996 45544
No 234
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=37.92 E-value=11 Score=40.46 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.9
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|+.||+|..+||.
T Consensus 343 ~~C~~Cg~C~~vCP~ 357 (432)
T TIGR00273 343 YLSSLCGACREVCPV 357 (432)
T ss_pred ccchhhhhhhccCCC
Confidence 579999999999996
No 235
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=37.84 E-value=12 Score=42.51 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=26.5
Q ss_pred CCCCCCccCCccccccccc-ccccceecC-----------------CCcccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAH-VKDACAFLG-----------------DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~-~~~ai~f~~-----------------eG~~~c~~vCp~ 99 (465)
.+.+.|.-||-|+.+|-.- ...++.|.+ +-|+.|.++||.
T Consensus 142 ~~~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPv 199 (687)
T PRK09130 142 TVMTRCIHCTRCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPV 199 (687)
T ss_pred EecccCCcccHHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCC
Confidence 3567899999999999521 112333322 127889999997
No 236
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=37.42 E-value=8.3 Score=37.83 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=16.4
Q ss_pred CCCCCCCccCCcccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~ 77 (465)
.+..+.|.+||.|...||.
T Consensus 199 ~i~~~~C~~C~~C~~~CP~ 217 (228)
T TIGR03294 199 NVNRDRCIKCGACYVQCPR 217 (228)
T ss_pred EEChhhccCHHHHHHHcCC
Confidence 4566789999999999996
No 237
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=37.36 E-value=13 Score=36.69 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=14.3
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
..|+.||+|..+||+.
T Consensus 201 ~~C~~C~~C~~vCPkg 216 (235)
T PRK12575 201 FRCRTIMNCVDVCPKG 216 (235)
T ss_pred ccccCcchhccccCCC
Confidence 4799999999999974
No 238
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=37.24 E-value=14 Score=39.44 Aligned_cols=26 Identities=8% Similarity=-0.111 Sum_probs=16.3
Q ss_pred ccccccccccccceecCC-----------Ccccccccccc
Q 012354 71 CDTYYIAHVKDACAFLGD-----------GMSRIEGLETV 99 (465)
Q Consensus 71 C~siCp~~~~~ai~f~~e-----------G~~~c~~vCp~ 99 (465)
|...||. .||.++.. .|..|.++||.
T Consensus 250 ~v~~Cp~---~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~ 286 (402)
T TIGR02064 250 VVNRCPT---KAISWDGSKELSIDNRECVRCMHCINKMPK 286 (402)
T ss_pred HhhcCCc---cccccCCCceEEEcchhcCcCccccccCcc
Confidence 7778885 45555432 25667777775
No 239
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=36.95 E-value=14 Score=36.60 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=13.8
Q ss_pred CCccCCccccccccc
Q 012354 64 HCSRCGLCDTYYIAH 78 (465)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (465)
.|+.||.|..+||++
T Consensus 204 ~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 204 SCTFVGYCSEVCPKH 218 (244)
T ss_pred hCcCcccccccCCCC
Confidence 799999999999974
No 240
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=36.71 E-value=15 Score=39.40 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=15.0
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
.-..|++||.|..+||.+
T Consensus 400 ~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 400 NLMDCIECGCCSYVCPSN 417 (435)
T ss_pred CCCcCCcCCCcccccCCC
Confidence 345799999999999963
No 241
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=36.51 E-value=12 Score=39.34 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=14.2
Q ss_pred CCCCccCCcccccccc
Q 012354 62 KDHCSRCGLCDTYYIA 77 (465)
Q Consensus 62 k~lCtGCGaC~siCp~ 77 (465)
-++|..||.|...||.
T Consensus 47 a~lChnC~~C~~~CPy 62 (372)
T TIGR02484 47 AHLCHDCQSCWHDCQY 62 (372)
T ss_pred HHHCcCcccccccCcC
Confidence 4689999999999994
No 242
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=36.38 E-value=10 Score=39.03 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=17.4
Q ss_pred CCCCCCCCCccCCcccccccc
Q 012354 57 GTYPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 57 ~~~~~k~lCtGCGaC~siCp~ 77 (465)
...++.+.|.+||-|...||.
T Consensus 195 ~l~id~~~Ci~Cg~Ci~~Cp~ 215 (317)
T COG2221 195 KLKIDGSKCIGCGKCIRACPK 215 (317)
T ss_pred eEEEehhhccCccHHhhhCCh
Confidence 345567799999999999994
No 243
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=36.10 E-value=18 Score=40.61 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=27.6
Q ss_pred CCCCCCCccCCc--ccccccccccccceec-------C---CCcccccccccc
Q 012354 59 YPAKDHCSRCGL--CDTYYIAHVKDACAFL-------G---DGMSRIEGLETV 99 (465)
Q Consensus 59 ~~~k~lCtGCGa--C~siCp~~~~~ai~f~-------~---eG~~~c~~vCp~ 99 (465)
......|.+|+. |..+||.. ++.+. . .||..|.++||.
T Consensus 50 ~~~~~~C~~C~~~~C~~~CP~~---ai~~~~~~v~~d~~~C~gC~~C~~~CP~ 99 (639)
T PRK12809 50 AANPVACHHCNNAPCVTACPVN---ALTFQSDSVQLDEQKCIGCKRCAIACPF 99 (639)
T ss_pred CccCCCCcCcCChhHHhhCCcC---ceeccccceecChhhCcchhhHhhhcCC
Confidence 345668999996 99999953 44332 2 257889999995
No 244
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=35.60 E-value=14 Score=38.20 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=14.2
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
..|+.||.|..+||++
T Consensus 209 w~C~~C~~C~~~CPk~ 224 (329)
T PRK12577 209 WGCTRCYYCNSVCPME 224 (329)
T ss_pred ccCcChhhhhhhCCCC
Confidence 3799999999999974
No 245
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=35.53 E-value=14 Score=41.30 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=14.9
Q ss_pred CCCCCCCccCCcccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~ 77 (465)
.++. .|.+||.|..+||.
T Consensus 575 ~i~~-~C~~Cg~C~~~CP~ 592 (595)
T TIGR03336 575 VIDP-LCTGCGVCAQICPF 592 (595)
T ss_pred eeCC-CCcCHHHHHhhCcc
Confidence 3444 79999999999995
No 246
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=34.25 E-value=80 Score=32.66 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=49.6
Q ss_pred eEEEEEccCCccCCCChHHHHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcCCCCcccCchHHHHHH
Q 012354 120 ELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALV 199 (465)
Q Consensus 120 ~~y~a~skd~r~~SsSGGi~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~GSKY~qS~~l~~l~ei 199 (465)
.+|.+.+-+ =.|+| ...+..+|+++|.||.+|++++.- .+|+.++-|.+|.+-.....=.++
T Consensus 56 ~ifL~~tg~----mvs~G-lr~ii~~Li~~~~VD~iVtTgani-------------~hD~~~~lg~~~y~G~~~~dd~~L 117 (312)
T PRK01221 56 LRFLSFTAN----LVSTG-LRGLIADLIKRGLFNVVITTCGTL-------------DHDIARSFGGVYYKGSFDIDDAML 117 (312)
T ss_pred eEEEEecch----hHHHH-HHHHHHHHHHcCCeeEEEeCCCch-------------HHHHHHHcCCCeEecCCCCChHHH
Confidence 445555433 12566 678999999999999999876531 468888888866543321111235
Q ss_pred HHcCCCEEEEEecC
Q 012354 200 EAAGVKRLLFCGVG 213 (465)
Q Consensus 200 ~~~~~kkVafvGtP 213 (465)
+++|..||.=+-.|
T Consensus 118 r~~GinRIgdv~ip 131 (312)
T PRK01221 118 KDLGIHRLGNVLIP 131 (312)
T ss_pred HHcCCCcceeeccC
Confidence 55677777777777
No 247
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=33.91 E-value=16 Score=39.52 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.1
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
.-..|..||.|.+.||..
T Consensus 131 ~~~~Ci~CG~C~~~CP~~ 148 (486)
T PRK06259 131 KLRGCIECLSCVSTCPAR 148 (486)
T ss_pred CchhcccCccccccCCCC
Confidence 346799999999999953
No 248
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=33.37 E-value=18 Score=37.79 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=15.4
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
.-+.|.+||+|..+||..
T Consensus 52 ~~~~C~~C~~C~~~CP~~ 69 (396)
T PRK11168 52 SLKYCSNCKRCEVACPSG 69 (396)
T ss_pred CCCcCcCcCccCcccCCC
Confidence 346899999999999964
No 249
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=33.04 E-value=32 Score=29.41 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=24.4
Q ss_pred ccCCCCccCcCCCCCCCcEEeeeCCCCCCCCC-CCCCCcEEEEEeCHH
Q 012354 297 VIAPSCYSCFDYTNALADLVVGYMGVPKYTGI-SMTQHPQYITVRNER 343 (465)
Q Consensus 297 ~~r~sC~~C~d~~~r~ADITiGd~G~~~~~g~-~~~~G~S~VlVrTek 343 (465)
-+.-+||.|.|...-.+-=-+.+.|....--+ -.+-|+||+-.|+++
T Consensus 30 G~~AsCYtC~dG~~~~~ASFmv~lg~~HliRFLVSd~GIsW~E~rd~r 77 (105)
T PF08844_consen 30 GYLASCYTCGDGRDMNSASFMVSLGDNHLIRFLVSDYGISWTEMRDDR 77 (105)
T ss_pred CceeEEEecCCCCCCCceeEEEEcCCCcEEEEEEecCCeeEEEecCch
Confidence 35679999987542222111222332211001 123489999998865
No 250
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=32.59 E-value=14 Score=42.65 Aligned_cols=17 Identities=24% Similarity=0.778 Sum_probs=14.7
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
.+.|++||.|..+||.+
T Consensus 436 ~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 436 EEQCYACGRCEQACPKN 452 (784)
T ss_pred HhhhhhhhHHhccCCCC
Confidence 35799999999999963
No 251
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=32.38 E-value=4e+02 Score=24.42 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=45.4
Q ss_pred cCchHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 012354 190 SPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 265 (465)
Q Consensus 190 S~~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~~ 265 (465)
..+...++.+.+.|. ++++ -|-+...-++.+.+.++. +.+++-+-.=..-|++..+...++.++..|+++..+.
T Consensus 95 ~~~~~~L~~L~~~g~-~~~i-~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~vg 172 (198)
T TIGR01428 95 PDVPAGLRALKERGY-RLAI-LSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFVA 172 (198)
T ss_pred CCHHHHHHHHHHCCC-eEEE-EeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEEe
Confidence 344556666666553 4333 333344555555555554 3344444333457899999999999998888876654
No 252
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=32.08 E-value=18 Score=42.04 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=15.6
Q ss_pred CCCCCCCCccCCccccccc
Q 012354 58 TYPAKDHCSRCGLCDTYYI 76 (465)
Q Consensus 58 ~~~~k~lCtGCGaC~siCp 76 (465)
...+.+.|.-||-|+.+|.
T Consensus 144 i~~d~~rCi~C~rCVr~c~ 162 (847)
T PRK08166 144 ISHEMNRCIACYRCVRYYK 162 (847)
T ss_pred eEecCCcCccccHHHHHHH
Confidence 3446778999999999995
No 253
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=31.66 E-value=21 Score=35.68 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.7
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
-..|+.||.|..+||+.
T Consensus 199 l~~C~~C~~C~~vCPkg 215 (251)
T PRK12386 199 LGYCNITKCCTEVCPEH 215 (251)
T ss_pred cccCcCCCCcCCcCCCC
Confidence 34699999999999975
No 254
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=31.47 E-value=17 Score=36.20 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.9
Q ss_pred CCCCCccCCcccccccccccccceec
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
....|++|+.|...||. .|+.+.
T Consensus 197 ~~~~C~~C~~Ci~~CP~---~AI~i~ 219 (263)
T PRK00783 197 DLLNCSLCKLCERACPG---KAIRVS 219 (263)
T ss_pred ChhhCCCchHHHHhCCC---CceEEE
Confidence 44579999999999995 466554
No 255
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=30.66 E-value=15 Score=40.76 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=14.9
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
.+.|.|||-|.++||++
T Consensus 437 ~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 437 HDVCIGCGRCEQVCPKN 453 (772)
T ss_pred HHHhhhhhhhhhhCccc
Confidence 45799999999999964
No 256
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=30.35 E-value=2e+02 Score=26.34 Aligned_cols=70 Identities=16% Similarity=0.111 Sum_probs=42.1
Q ss_pred ccCchHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 189 LSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 189 qS~~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
...+.+.|+++++.+.+-+.+++.++. .-+..+.+.++.. +. +-..-|++..+...++.++.+++++..+
T Consensus 45 ~pgv~e~L~~Lk~~g~~l~I~Sn~~~~-~~~~~~~~~~gl~--~~---~~~~KP~p~~~~~~l~~~~~~~~~~l~I 114 (170)
T TIGR01668 45 YPALRDWIEELKAAGRKLLIVSNNAGE-QRAKAVEKALGIP--VL---PHAVKPPGCAFRRAHPEMGLTSEQVAVV 114 (170)
T ss_pred ChhHHHHHHHHHHcCCEEEEEeCCchH-HHHHHHHHHcCCE--EE---cCCCCCChHHHHHHHHHcCCCHHHEEEE
Confidence 344566677777766444555566643 2233333344432 11 2245899999999999988877766544
No 257
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=30.34 E-value=21 Score=37.44 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=15.5
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
.-+.|+.||+|...||.+
T Consensus 50 ~~~~C~~C~~C~~~CP~~ 67 (397)
T TIGR03379 50 ALKYCTNCKRCEVACPSD 67 (397)
T ss_pred ccccCcCcCccchhcCCC
Confidence 356899999999999964
No 258
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=30.32 E-value=19 Score=42.92 Aligned_cols=14 Identities=36% Similarity=0.954 Sum_probs=13.1
Q ss_pred CCccCCcccccccc
Q 012354 64 HCSRCGLCDTYYIA 77 (465)
Q Consensus 64 lCtGCGaC~siCp~ 77 (465)
.|.+||.|.++||.
T Consensus 922 ~C~~CG~C~~vCP~ 935 (1012)
T TIGR03315 922 MCNECGNCATFCPY 935 (1012)
T ss_pred cccccchHHHhCCC
Confidence 59999999999996
No 259
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=29.61 E-value=17 Score=41.84 Aligned_cols=16 Identities=31% Similarity=0.848 Sum_probs=14.3
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
+.|++||.|..+||.+
T Consensus 442 ~~Ct~CG~CeeVCPtg 457 (781)
T PRK00941 442 DKCIGCGRCEQVCPKN 457 (781)
T ss_pred hhccchhHHhhhCCCC
Confidence 5799999999999964
No 260
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=29.39 E-value=2.8e+02 Score=25.47 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=43.9
Q ss_pred CchHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 191 PNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 191 ~~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
.+...+..+++.|.+-++++..+.++ +...+.++. +.++.-+-.-.+-|++..+...++.++.+|+++..+
T Consensus 109 g~~~~l~~L~~~g~~~~i~Sn~~~~~---~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 109 DAIKLLKDLRERGLILGVISNFDSRL---RGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred CHHHHHHHHHHCCCEEEEEeCCchhH---HHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 34556666666654445555555443 333344443 344444444446799999999999999888776555
No 261
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=29.21 E-value=20 Score=35.56 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=25.7
Q ss_pred hhhhccccccCCCCCC-CCCCCCccCCcccccccccccccceec
Q 012354 44 EDWRKRSKPIPPGGTY-PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 44 ~~~~~~~~~~~~~~~~-~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
..+..++..++++... ...+.|++|+.|..+||. .++.+.
T Consensus 179 ~~CP~~vi~~d~~~~~v~~~~~C~~C~~C~~~Cp~---~AI~~~ 219 (259)
T cd07030 179 EECPRGVLELEEGKVVVEDLEDCSLCKLCERACDA---GAIRVG 219 (259)
T ss_pred HhCCccceEccCCeeEEeChhhCcCchHHHHhCCC---CcEEEE
Confidence 3345555555554222 245689999999999995 456554
No 262
>PRK13795 hypothetical protein; Provisional
Probab=28.92 E-value=18 Score=40.84 Aligned_cols=19 Identities=21% Similarity=0.599 Sum_probs=15.8
Q ss_pred CCCCCCCccCCcccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~ 77 (465)
.+..+.|++||.|..+||.
T Consensus 608 ~id~~~C~~Cg~C~~aCP~ 626 (636)
T PRK13795 608 SVDEEKCIHCGKCTEVCPV 626 (636)
T ss_pred EechhhcCChhHHHhhcCC
Confidence 3445689999999999995
No 263
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=28.87 E-value=22 Score=35.11 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=14.2
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
-.|+.||.|..+||+.
T Consensus 206 ~~C~~C~~C~~vCPk~ 221 (239)
T PRK13552 206 FGCMSLLGCEDNCPKD 221 (239)
T ss_pred CCCcCcCccchhCCCC
Confidence 4799999999999974
No 264
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=28.64 E-value=21 Score=30.45 Aligned_cols=29 Identities=17% Similarity=-0.087 Sum_probs=20.0
Q ss_pred CcccccccccccccceecCCC-----------ccccccccccc
Q 012354 69 GLCDTYYIAHVKDACAFLGDG-----------MSRIEGLETVV 100 (465)
Q Consensus 69 GaC~siCp~~~~~ai~f~~eG-----------~~~c~~vCp~~ 100 (465)
-+|..+||. .|+..+++| |+.|..+||..
T Consensus 37 k~C~~aCPa---gA~~~~e~G~V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 37 ELLVKACPA---GLYKKQDDGSVRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred hHHHHHCCH---hhcEeCCCCCEEEcCCCCCcchhhhhhcCCC
Confidence 389999996 456554443 67788888743
No 265
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=28.26 E-value=3.3e+02 Score=25.30 Aligned_cols=72 Identities=15% Similarity=0.053 Sum_probs=43.3
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCCC----ceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLE----KLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 265 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~e----~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~~ 265 (465)
+...|+.+++.|. +++ +-|-.....++...+.++.+ .+++-+-.-..-|+++.+...++.++.+++++..+.
T Consensus 99 ~~~~L~~L~~~g~-~~~-i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ig 174 (221)
T TIGR02253 99 VRDTLMELRESGY-RLG-IITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVG 174 (221)
T ss_pred HHHHHHHHHHCCC-EEE-EEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEEC
Confidence 3455666666553 433 33333333444444455543 344444444567899999999999998888776663
No 266
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=28.05 E-value=4.8e+02 Score=24.06 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=37.9
Q ss_pred CCCEEEEEecCh----HH---HHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHh
Q 012354 203 GVKRLLFCGVGC----QV---QALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAA 254 (465)
Q Consensus 203 ~~kkVafvGtPC----QI---~aLr~l~~~l~~e~L~~Igl~C~Gv~S~~~~~~~L~~~ 254 (465)
.+|+|+++||-- .= ..++++...+..++.++=.+.|.|-.++...+.|-+.+
T Consensus 66 ~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~~~~lg~f~CqGk~~~~~~e~~~~~~ 124 (160)
T PF12641_consen 66 KGKKVALFGTAGAGPDSEYAKKILKNVEALLPKGNEILGTFMCQGKMDPKVIEKYKKML 124 (160)
T ss_pred cCCeEEEEEecCCCCchHHHHHHHHHHHHhhccCCeecceEEeCCcCCHHHHHHHHhcc
Confidence 358999999943 21 23344433445568899999999999999999888764
No 267
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=26.89 E-value=22 Score=30.54 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=6.9
Q ss_pred CCccCC--ccccccc
Q 012354 64 HCSRCG--LCDTYYI 76 (465)
Q Consensus 64 lCtGCG--aC~siCp 76 (465)
.|.-|- .|..+||
T Consensus 34 ~~~~~~~~~l~~aCP 48 (99)
T COG2440 34 DCQECEDKPLIKACP 48 (99)
T ss_pred hhhhccchhhhhcCC
Confidence 455555 5555554
No 268
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=26.85 E-value=33 Score=32.18 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=25.2
Q ss_pred CCccCCcccccccccccccceecC----------CCcccccccccc
Q 012354 64 HCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 64 lCtGCGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
.| .+--|..+||. +||.+++ -||++|.-+||.
T Consensus 55 qC-edaPC~~vCP~---~AI~~~~~~v~V~~ekCiGC~~C~~aCPf 96 (165)
T COG1142 55 HC-EDAPCAEVCPV---GAITRDDGAVQVDEEKCIGCKLCVVACPF 96 (165)
T ss_pred CC-CCcchhhhCch---hheeecCCceEEchhhccCcchhhhcCCc
Confidence 56 66788999996 6888863 168899999995
No 269
>COG4022 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.58 E-value=6e+02 Score=25.46 Aligned_cols=88 Identities=23% Similarity=0.295 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcC--CCCc-ccCchHHHHHHHHcCCCEEEEE--ecC
Q 012354 139 VTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKG--VKPT-LSPNLNTLALVEAAGVKRLLFC--GVG 213 (465)
Q Consensus 139 ~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~G--SKY~-qS~~l~~l~ei~~~~~kkVafv--GtP 213 (465)
++.+....|++|.+|++|.+. + -.-.++.++|+=+....| |--+ -+|..+++..+.+.| .-||=- .+=
T Consensus 82 aSEimmt~L~~g~lDaaV~vc-D-----gAGTVIs~nP~lvQGigGriSGlveT~Pi~eVI~rie~~g-g~VL~~~ta~I 154 (286)
T COG4022 82 ASEIMMTGLKRGLLDAAVTVC-D-----GAGTVISSNPALVQGIGGRISGLVETEPIDEVIDRIEKSG-GIVLDPKTATI 154 (286)
T ss_pred HHHHHHHHHhhcccceEEEEe-c-----CcccEecCCHHHHhhcccceeccccCCchHHHHHhhhhcC-ceeeCcccccc
Confidence 478889999999999988744 2 134567777777665554 2222 456677777777655 344432 233
Q ss_pred hHHHHHHHHHHhcCCCce-EEE
Q 012354 214 CQVQALRSVEHHLNLEKL-YVL 234 (465)
Q Consensus 214 CQI~aLr~l~~~l~~e~L-~~I 234 (465)
=|+.|+++.. .++++++ .|+
T Consensus 155 dq~~GVkkA~-ElgykkvAVTv 175 (286)
T COG4022 155 DQVEGVKKAA-ELGYKKVAVTV 175 (286)
T ss_pred chhhhHHHHH-HcCcceEEEEe
Confidence 6888887764 3666654 444
No 270
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=26.30 E-value=27 Score=35.43 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=14.8
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
-..|+.||.|..+||+.
T Consensus 243 l~~C~~C~~C~~vCPkg 259 (276)
T PLN00129 243 LYRCHTIRNCSNACPKG 259 (276)
T ss_pred CCcCcChhhccccCCCC
Confidence 35799999999999974
No 271
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=26.12 E-value=2.2e+02 Score=29.35 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=56.7
Q ss_pred eEEEEEccCCccCCCChHHHHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcCCCCcccCchHHHHHH
Q 012354 120 ELLYARKTKPVEGAQWTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALV 199 (465)
Q Consensus 120 ~~y~a~skd~r~~SsSGGi~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~GSKY~qS~~l~~l~ei 199 (465)
.++.+.+-+ =.|+|+ ..+..+|+++|.||.+|++++.- .+|+.++-|.+|.-+...+ =.++
T Consensus 47 ~ifLt~tg~----mvsaGl-r~ii~~Li~~g~Vd~ivtTganl-------------~hD~~~~~g~~~~g~f~~d-d~~L 107 (301)
T TIGR00321 47 TIFMGYAGN----LVPSGM-REIIAYLIQHGMIDALVTTGANL-------------EHDLIEALGPTHLGDFAVD-DKKL 107 (301)
T ss_pred eEEEEeccc----cchhhH-HHHHHHHHHcCCeeEEEeCCCch-------------HHHHHHHcCcccccCCCCC-hHHH
Confidence 345555433 234555 47888999999999999877531 4688888888777544332 1235
Q ss_pred HHcCCCEEEEEecChHHHHHHHHHHh
Q 012354 200 EAAGVKRLLFCGVGCQVQALRSVEHH 225 (465)
Q Consensus 200 ~~~~~kkVafvGtPCQI~aLr~l~~~ 225 (465)
+++|..||.=+-.|= ..++.+++.
T Consensus 108 r~~ginRI~dv~ip~--e~y~~~E~~ 131 (301)
T TIGR00321 108 REEGINRIGDVFVPN--ENFEVFEEW 131 (301)
T ss_pred HHcCCCccceecCCH--HHHHHHHHH
Confidence 667788888888883 666777653
No 272
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=26.08 E-value=24 Score=38.76 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=21.0
Q ss_pred hhhhhccccccCCCCCCCCCCCCccCCccccccccc
Q 012354 43 REDWRKRSKPIPPGGTYPAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~k~lCtGCGaC~siCp~~ 78 (465)
.-.|+.+..-.++-. ...--.|+.||+|..+||.+
T Consensus 385 ql~~~a~~~~~~e~~-~~~l~dCIECg~Ca~vCPs~ 419 (529)
T COG4656 385 QLYWFAKGEQHDEEE-EHNLLDCIECGACAYVCPSN 419 (529)
T ss_pred HhhHHhhhhhhhHHH-HHHhhhhhhhCcchhcCCCC
Confidence 345666553322221 11223499999999999963
No 273
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=25.83 E-value=35 Score=38.45 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=26.9
Q ss_pred CCCCCccCCc--ccccccccccccceecC----------CCccccccccccc
Q 012354 61 AKDHCSRCGL--CDTYYIAHVKDACAFLG----------DGMSRIEGLETVV 100 (465)
Q Consensus 61 ~k~lCtGCGa--C~siCp~~~~~ai~f~~----------eG~~~c~~vCp~~ 100 (465)
....|..|+- |..+||.. ++.... .||..|...||..
T Consensus 52 ~~~~C~~C~~~~C~~~CP~~---ai~~~~~~~~id~~~C~~C~~C~~~CP~~ 100 (654)
T PRK12769 52 SAVTCHHCEDAPCARSCPNG---AISHVDDSIQVNQQKCIGCKSCVVACPFG 100 (654)
T ss_pred CCccCCCCCChhHhhhCCcc---ceeccCCeEEEecccccCcChhcccCCcc
Confidence 4568999996 99999963 443322 2578899999953
No 274
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=25.47 E-value=33 Score=39.14 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=26.1
Q ss_pred CCCCCccCCcccccccccc-cccceecCC-----------------Ccccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHV-KDACAFLGD-----------------GMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~-~~ai~f~~e-----------------G~~~c~~vCp~ 99 (465)
+..+|.-|+-|+.+|-... ...+.|.+. .|+.|..+||.
T Consensus 142 dm~RCI~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPv 198 (693)
T COG1034 142 DMNRCILCTRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPV 198 (693)
T ss_pred ccccceechhhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccc
Confidence 4448999999999996321 112333322 27899999996
No 275
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=25.33 E-value=30 Score=32.61 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=18.8
Q ss_pred CCCCCCccCCcccccccccccccceec
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
++-..|.=||.|...||. +||.+.
T Consensus 147 IDmtkCIyCG~CqEaCPv---daiveg 170 (212)
T KOG3256|consen 147 IDMTKCIYCGFCQEACPV---DAIVEG 170 (212)
T ss_pred ccceeeeeecchhhhCCc---cceecc
Confidence 355679999999999996 566553
No 276
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=25.33 E-value=27 Score=37.50 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=13.4
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|+-||+|..+||-
T Consensus 358 ~~c~lcg~C~evCPv 372 (459)
T COG1139 358 YACSLCGACTEVCPV 372 (459)
T ss_pred hhhccccCCCCcCCC
Confidence 469999999999994
No 277
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=24.88 E-value=21 Score=40.90 Aligned_cols=17 Identities=29% Similarity=0.714 Sum_probs=14.8
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
...|++||.|..+||..
T Consensus 402 ~~~Ct~CG~C~evCP~g 418 (731)
T cd01916 402 FDQCVGCGRCEQECPKE 418 (731)
T ss_pred HhhhhhhhHHhhhCCCC
Confidence 36899999999999964
No 278
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=24.66 E-value=2.2e+02 Score=26.81 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=43.5
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCCCceEEEcccC-----CCCCCHHHHHHHHHHhCCCCCceEEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNC-----VDNGTREGLDKFLKAASSEPETVLHYE 265 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~e~L~~Igl~C-----~Gv~S~~~~~~~L~~~~~~~~~I~~~~ 265 (465)
+...++.+.+.|. ++++ -|.+....++.+.++++.+.++-. ++| ++-|.++.+...++.++.+++++..+.
T Consensus 97 ~~~~l~~l~~~g~-~~~i-~S~~~~~~~~~~l~~~~l~~~f~~-~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ig 172 (222)
T PRK10826 97 VREALALCKAQGL-KIGL-ASASPLHMLEAVLTMFDLRDYFDA-LASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALE 172 (222)
T ss_pred HHHHHHHHHHCCC-eEEE-EeCCcHHHHHHHHHhCcchhcccE-EEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEEEc
Confidence 4455666666654 4433 333445555555555665444321 223 456889999999999999888876654
No 279
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=24.59 E-value=6e+02 Score=25.58 Aligned_cols=98 Identities=27% Similarity=0.372 Sum_probs=49.5
Q ss_pred HHHHH-HHHHHHcCCeeEEEEEeeCCCCCCc-------eeEEEEcCHHHHHhhc----CCCCc----ccCchHHHH-HH-
Q 012354 138 IVTTI-AIEMLKTGMVEAVVCVQSDPDDRLS-------PRPVLARTPEEVLAAK----GVKPT----LSPNLNTLA-LV- 199 (465)
Q Consensus 138 i~TaL-a~~lLe~G~VdgVV~~~~~~dd~~~-------~~~~la~t~eel~~~~----GSKY~----qS~~l~~l~-ei- 199 (465)
.++++ |++++++|+- -|+++-+++|-++. +.-.+-.-.|-+.+.+ |..|. ..+..+.+. +.
T Consensus 15 tiaalll~~l~~~~~~-~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~~~~~~di~~e~~ 93 (255)
T COG3640 15 TIAALLLKRLLSKGGY-NVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKENPLVSDLPDEYL 93 (255)
T ss_pred HHHHHHHHHHHhcCCc-eEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccccCcchhhhhHHHh
Confidence 35555 9999999863 36766777654432 1222333334444442 22222 222222222 32
Q ss_pred HHcCCCEEEEEecC--------hHHHHH-HHHHHhcC--CCceEEEcc
Q 012354 200 EAAGVKRLLFCGVG--------CQVQAL-RSVEHHLN--LEKLYVLGT 236 (465)
Q Consensus 200 ~~~~~kkVafvGtP--------CQI~aL-r~l~~~l~--~e~L~~Igl 236 (465)
.+.+.=+++++|+| |-+.+| |.+++++- .+.+++||.
T Consensus 94 ~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDt 141 (255)
T COG3640 94 VENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDT 141 (255)
T ss_pred hhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEec
Confidence 23445678999886 555554 55555432 234555553
No 280
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=24.54 E-value=29 Score=36.62 Aligned_cols=17 Identities=29% Similarity=0.688 Sum_probs=14.8
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
...|++||-|...||++
T Consensus 350 as~CieCgqCl~~CPq~ 366 (391)
T COG1453 350 ASDCIECGQCLEKCPQH 366 (391)
T ss_pred ccccchhhhhhhcCCCc
Confidence 44699999999999976
No 281
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=24.43 E-value=1.3e+02 Score=24.04 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=21.2
Q ss_pred eEEEEEEeCcEEEEEEeCCcEEEecccc
Q 012354 261 VLHYEFMQDYKVHLKHLDGHIEEVPYFC 288 (465)
Q Consensus 261 I~~~~FR~~g~~~i~~~dG~~~~~~y~~ 288 (465)
|+.+.+.+++.+.+++.||++..+|+..
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~~~dl~~ 28 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETRIFDLSP 28 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEECCC
T ss_pred CeEEEEcCCcEEEEEEcCCCEEEEEhHH
Confidence 4678888788999999999988776544
No 282
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=24.27 E-value=64 Score=26.49 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=44.3
Q ss_pred HHHHHHHHhhhCCCcchhhhhhhhhhhHhHHHHHHhhc-c--hhhhhhcCchHHHHHHHhhccCc
Q 012354 395 GNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAW-G--KKRADKHMPSYAKKIVEMYNQNG 456 (465)
Q Consensus 395 ~~~~~~l~~~~gp~glef~r~~~~~~~~~~~~~~~~~~-~--~~~~~~~~p~~~~~~~~~y~~~~ 456 (465)
...|..++.+.|++|...--+-+++-.-.+++++.-.- . .++. ..-++.+.+||++|+|-.
T Consensus 11 D~ki~~l~~~~G~~G~~~y~~ll~~iy~~~~y~~~~~~~~~~a~~~-~~~~~~v~~II~~~~LF~ 74 (87)
T PF14297_consen 11 DPKIRRLMAEYGCEGYGIYWYLLEYIYKQGGYYLWWDKLFLIARKL-GVSEEYVEEIINEYGLFD 74 (87)
T ss_pred CHHHHHHHHHcCCchHHHHHHHHHHHHcCCCeEeeHHHHHHHHHHH-CcCHHHHHHHHHHhCCcc
Confidence 45678899999999999888888877777766554331 0 1122 567899999999998754
No 283
>PRK06769 hypothetical protein; Validated
Probab=24.08 E-value=3.7e+02 Score=24.59 Aligned_cols=74 Identities=8% Similarity=0.032 Sum_probs=44.0
Q ss_pred chHHHHHHHHcCCCEEEEEecChH------HHHHHHHHHhcCCCceEEEcccCC-----CCCCHHHHHHHHHHhCCCCCc
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQ------VQALRSVEHHLNLEKLYVLGTNCV-----DNGTREGLDKFLKAASSEPET 260 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQ------I~aLr~l~~~l~~e~L~~Igl~C~-----Gv~S~~~~~~~L~~~~~~~~~ 260 (465)
+...|+++.+.|.+-..++..+.. +..+....+.++.+..+.....|. .-|.+..+...++.++.++++
T Consensus 33 v~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 112 (173)
T PRK06769 33 TKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQ 112 (173)
T ss_pred HHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 445666666666444455555531 112333333456665543333353 478999999999999888877
Q ss_pred eEEEE
Q 012354 261 VLHYE 265 (465)
Q Consensus 261 I~~~~ 265 (465)
...+.
T Consensus 113 ~i~IG 117 (173)
T PRK06769 113 CAVIG 117 (173)
T ss_pred eEEEc
Confidence 66554
No 284
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=23.22 E-value=1.9e+02 Score=30.11 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcCCCCcccCchHHHHHHHHcCCCEEEEEecCh
Q 012354 135 WTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGC 214 (465)
Q Consensus 135 SGGi~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~GSKY~qS~~l~~l~ei~~~~~kkVafvGtPC 214 (465)
|.|+= .+..+|+++|.||.+|++++.- .+|+.++-|-+|........=.++++.+..||.=+-.|=
T Consensus 59 saGlr-~~i~~Li~~g~VD~iVTTgani-------------~hD~~~~lg~~~y~g~f~~dd~~Lr~~ginRIgdv~ip~ 124 (329)
T PRK00805 59 PAGMR-KIIKWLIRNRYVDVLVSTGANI-------------FHDIHEALGFKHYKGSHHVDDEELFKEGIDRIYDVFAYE 124 (329)
T ss_pred HHHHH-HHHHHHHHcCCeeEEEeCCCch-------------HHHHHHHcCCCeeccCCCCCHHHHHHcCCCcccccccCH
Confidence 45554 6888999999999999876531 468889988666544332112235567778888888883
Q ss_pred HHHHHHHHHHh
Q 012354 215 QVQALRSVEHH 225 (465)
Q Consensus 215 QI~aLr~l~~~ 225 (465)
..++.+++.
T Consensus 125 --e~y~~~E~~ 133 (329)
T PRK00805 125 --EEFRKADNL 133 (329)
T ss_pred --HHHHHHHHH
Confidence 566776653
No 285
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=23.08 E-value=2.2e+02 Score=29.49 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHcCCeeEEEEEeeCCCCCCceeEEEEcCHHHHHhhcCCCCcc-cCchHHHHHHHHcCCCEEEEEecC
Q 012354 135 WTGIVTTIAIEMLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTL-SPNLNTLALVEAAGVKRLLFCGVG 213 (465)
Q Consensus 135 SGGi~TaLa~~lLe~G~VdgVV~~~~~~dd~~~~~~~la~t~eel~~~~GSKY~q-S~~l~~l~ei~~~~~kkVafvGtP 213 (465)
|.|+ ..+..+|+++|.||.+|++++.- .+|+.++-|-+|.+ ++..+ =.+++++|..||.=+-.|
T Consensus 70 saGl-r~ii~~Li~~~~VD~iVtTgani-------------ehD~~~~lg~~~y~G~~~~d-d~~Lr~~ginRIgd~~ip 134 (316)
T PRK02301 70 PAGM-RGIVSDLIRDGHIDVLVTTGANL-------------THDVIEAIGGHHHHGTAHAH-DEELRDEGIDRIYDVYLP 134 (316)
T ss_pred HHHH-HHHHHHHHHcCCeeEEEcCCCch-------------HHHHHHHcCCCeeccCCCCC-HHHHHHcCCCccceeCCC
Confidence 4555 47888999999999999876531 36888888855543 33222 123556777888888888
Q ss_pred hHHHHHHHHHHh
Q 012354 214 CQVQALRSVEHH 225 (465)
Q Consensus 214 CQI~aLr~l~~~ 225 (465)
= ..++.+++.
T Consensus 135 ~--e~y~~~E~~ 144 (316)
T PRK02301 135 Q--EHFADFEEF 144 (316)
T ss_pred h--HHHHHHHHH
Confidence 3 666777653
No 286
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=22.77 E-value=23 Score=34.35 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=16.2
Q ss_pred CCCCCCCccCCcccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAHV 79 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~ 79 (465)
.++.+.|+||.+|..+|...+
T Consensus 14 ~~D~~rCiGC~aC~~AC~~~n 34 (203)
T COG0437 14 VIDSSRCIGCKACVVACKEEN 34 (203)
T ss_pred EEecccccCcHHHHHHHHHhc
Confidence 345558999999999997543
No 287
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=22.57 E-value=4.3e+02 Score=24.32 Aligned_cols=71 Identities=18% Similarity=0.092 Sum_probs=42.9
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCCCc----eEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK----LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~e~----L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
+...++.+.++| -+++++ |......++.+.++++... ++.-+-...+-|.++.+...++.++.+++++..+
T Consensus 90 ~~~~L~~l~~~g-~~~~i~-S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 90 VEATLGALRAKG-LRLGLV-TNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYV 164 (213)
T ss_pred HHHHHHHHHHCC-CeEEEE-eCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEe
Confidence 345556566665 455544 3344455666655555432 2333333445788999999999998877765544
No 288
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=22.43 E-value=4.9e+02 Score=22.14 Aligned_cols=74 Identities=15% Similarity=0.084 Sum_probs=44.4
Q ss_pred cCchHHHHHHHHcCCCEEEEEecC-----hH-HHHHHHHHHhcCCCceEEEcccCC--CCCCHHHHHHHHHHh-CCCCCc
Q 012354 190 SPNLNTLALVEAAGVKRLLFCGVG-----CQ-VQALRSVEHHLNLEKLYVLGTNCV--DNGTREGLDKFLKAA-SSEPET 260 (465)
Q Consensus 190 S~~l~~l~ei~~~~~kkVafvGtP-----CQ-I~aLr~l~~~l~~e~L~~Igl~C~--Gv~S~~~~~~~L~~~-~~~~~~ 260 (465)
..+...++.+++.|.+-+++++.+ .. -..++.+.+.++....+. +.|+ .-|+++.++..++.+ +.++++
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 105 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVL--YACPHCRKPKPGMFLEALKRFNEIDPEE 105 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEE--EECCCCCCCChHHHHHHHHHcCCCChhh
Confidence 344566776766664444455544 11 344555555566542222 2443 468889999999999 588887
Q ss_pred eEEEE
Q 012354 261 VLHYE 265 (465)
Q Consensus 261 I~~~~ 265 (465)
+..+.
T Consensus 106 ~v~IG 110 (132)
T TIGR01662 106 SVYVG 110 (132)
T ss_pred eEEEc
Confidence 76654
No 289
>PRK13984 putative oxidoreductase; Provisional
Probab=22.03 E-value=46 Score=36.94 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=19.2
Q ss_pred CCCCCCCccCCcccccccccccccceec
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
..+.+.|.+|+.|..+||. .|+.+.
T Consensus 82 ~i~~~~c~~c~~c~~~Cp~---~Ai~~~ 106 (604)
T PRK13984 82 VIDYGRCSFCALCVDICTT---GSLKMT 106 (604)
T ss_pred ccCcccCcCcchHHhhCCc---CcEEec
Confidence 4556689999999999996 455553
No 290
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=21.96 E-value=38 Score=36.63 Aligned_cols=16 Identities=25% Similarity=0.656 Sum_probs=14.3
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
..|+.||.|..+||..
T Consensus 185 ~~C~~C~~C~~~CP~g 200 (486)
T PRK06259 185 YNCTTCGKCVEVCPKE 200 (486)
T ss_pred cCCCCcCcccCcCCCC
Confidence 4699999999999964
No 291
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=20.60 E-value=4.1e+02 Score=24.69 Aligned_cols=70 Identities=17% Similarity=0.103 Sum_probs=41.5
Q ss_pred hHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCCCc----eEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 193 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK----LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 193 l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~e~----L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
...++.+.+.+.+-..+++.+ -..++...+.++... ++..+-.-.+-|.+..+...++.++.+++++..+
T Consensus 88 ~~~l~~L~~~g~~~~i~S~~~--~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 88 YETLKTLKKQGYKLGIVTTKM--RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred HHHHHHHHHCCCeEEEEeCCC--HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 445555555554333344444 345555545556543 3344444456799999999999988777665544
No 292
>PHA02132 hypothetical protein
Probab=20.40 E-value=47 Score=26.88 Aligned_cols=21 Identities=29% Similarity=0.925 Sum_probs=17.3
Q ss_pred hhhhhhccccccCCCCCCCCCCCCc
Q 012354 42 LREDWRKRSKPIPPGGTYPAKDHCS 66 (465)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~k~lCt 66 (465)
--.+||++ +|+|.+|++.+|+
T Consensus 30 ffdewr~~----~pdsk~pa~sl~~ 50 (86)
T PHA02132 30 FFDEWRQK----RPDSKMPARSLCA 50 (86)
T ss_pred HHHHHHcC----CCCccCchhhhhh
Confidence 45789986 6889999999985
No 293
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=20.11 E-value=42 Score=35.48 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.9
Q ss_pred CCccCCccccccccc
Q 012354 64 HCSRCGLCDTYYIAH 78 (465)
Q Consensus 64 lCtGCGaC~siCp~~ 78 (465)
-||+|..|.- ||..
T Consensus 294 ~Ct~C~yC~P-CP~g 307 (391)
T COG1453 294 PCTGCRYCLP-CPSG 307 (391)
T ss_pred CCccccccCc-CCCC
Confidence 3999999997 9954
No 294
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=20.04 E-value=33 Score=37.05 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=13.6
Q ss_pred CCCccCCcccccccc
Q 012354 63 DHCSRCGLCDTYYIA 77 (465)
Q Consensus 63 ~lCtGCGaC~siCp~ 77 (465)
..|.+||.|..+||.
T Consensus 255 ~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 255 LECINCGLCIDACDD 269 (434)
T ss_pred hhChhhhHHHHhCCC
Confidence 479999999999994
Done!