Query 012354
Match_columns 465
No_of_seqs 262 out of 681
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 07:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fgo_A Ferredoxin; allochromat 95.6 0.0045 1.5E-07 48.8 2.2 37 60-99 3-55 (82)
2 1rgv_A Ferredoxin; electron tr 95.6 0.0044 1.5E-07 48.6 1.9 37 60-99 3-55 (80)
3 2fdn_A Ferredoxin; electron tr 95.3 0.0074 2.5E-07 43.7 2.1 35 62-99 5-49 (55)
4 1dax_A Ferredoxin I; electron 95.2 0.0037 1.3E-07 46.7 0.3 17 60-76 6-22 (64)
5 3eun_A Ferredoxin; electron tr 95.2 0.005 1.7E-07 48.7 1.0 36 61-99 4-55 (82)
6 2zvs_A Uncharacterized ferredo 95.1 0.0047 1.6E-07 49.1 0.7 36 61-99 4-55 (85)
7 1dwl_A Ferredoxin I; electron 95.1 0.012 4.1E-07 42.6 2.8 18 60-77 4-21 (59)
8 1rof_A Ferredoxin; electron tr 95.0 0.0053 1.8E-07 44.7 0.6 18 60-77 5-22 (60)
9 3i9v_9 NADH-quinone oxidoreduc 94.9 0.005 1.7E-07 55.5 0.2 18 61-78 49-66 (182)
10 7fd1_A FD1, protein (7-Fe ferr 94.6 0.0077 2.6E-07 49.9 0.7 36 61-99 4-51 (106)
11 1f2g_A Ferredoxin II; electron 94.4 0.011 3.8E-07 43.0 1.1 17 60-77 4-20 (58)
12 1bc6_A 7-Fe ferredoxin; electr 94.3 0.014 4.9E-07 45.3 1.6 37 60-99 3-51 (77)
13 1hfe_L Protein (Fe-only hydrog 94.2 0.013 4.3E-07 60.9 1.4 38 60-100 30-79 (421)
14 1xer_A Ferredoxin; electron tr 94.2 0.0097 3.3E-07 48.7 0.3 37 60-99 40-95 (103)
15 1jb0_C Photosystem I iron-sulf 93.5 0.015 5.3E-07 44.9 0.4 35 62-99 7-59 (80)
16 2v2k_A Ferredoxin; iron, trans 93.3 0.02 6.8E-07 47.2 0.7 37 60-99 3-51 (105)
17 3gyx_B Adenylylsulfate reducta 93.3 0.019 6.5E-07 52.1 0.6 37 60-99 4-58 (166)
18 1jnr_B Adenylylsulfate reducta 93.1 0.021 7.1E-07 50.9 0.6 38 60-100 5-60 (150)
19 1h98_A Ferredoxin; electron tr 93.0 0.017 5.7E-07 45.0 -0.1 36 61-99 4-51 (78)
20 7fd1_A FD1, protein (7-Fe ferr 92.6 0.038 1.3E-06 45.6 1.5 26 59-87 33-58 (106)
21 1iqz_A Ferredoxin; iron-sulfer 92.0 0.046 1.6E-06 42.8 1.2 17 60-76 6-22 (81)
22 2fdn_A Ferredoxin; electron tr 91.8 0.057 1.9E-06 38.8 1.5 23 60-85 32-54 (55)
23 1sj1_A Ferredoxin; thermostabi 91.6 0.053 1.8E-06 40.0 1.2 18 60-77 6-23 (66)
24 1bc6_A 7-Fe ferredoxin; electr 91.6 0.051 1.7E-06 42.0 1.1 24 60-86 34-57 (77)
25 2c42_A Pyruvate-ferredoxin oxi 91.6 0.045 1.6E-06 64.0 1.1 19 60-78 683-701 (1231)
26 1h98_A Ferredoxin; electron tr 91.3 0.051 1.7E-06 42.2 0.8 24 60-86 34-57 (78)
27 1gte_A Dihydropyrimidine dehyd 91.1 0.042 1.4E-06 63.1 0.1 41 59-99 947-998 (1025)
28 2v2k_A Ferredoxin; iron, trans 89.9 0.11 3.6E-06 42.7 1.5 25 60-87 34-58 (105)
29 1ti6_B Pyrogallol hydroxytrans 89.2 0.11 3.7E-06 50.8 1.3 25 59-86 93-117 (274)
30 1xer_A Ferredoxin; electron tr 88.8 0.11 3.8E-06 42.2 0.8 25 60-87 78-102 (103)
31 1kqf_B FDH-N beta S, formate d 88.2 0.083 2.8E-06 52.1 -0.4 36 62-99 97-145 (294)
32 3c8y_A Iron hydrogenase 1; dit 88.1 0.058 2E-06 58.1 -1.7 41 59-99 141-202 (574)
33 2ivf_B Ethylbenzene dehydrogen 88.0 0.12 3.9E-06 52.6 0.5 14 63-76 149-164 (352)
34 1q16_B Respiratory nitrate red 87.6 0.13 4.4E-06 54.7 0.7 18 239-256 432-449 (512)
35 2vpz_B NRFC protein; oxidoredu 86.0 0.19 6.4E-06 46.5 0.7 26 59-87 84-109 (195)
36 1dwl_A Ferredoxin I; electron 85.9 0.33 1.1E-05 34.7 1.9 22 61-85 37-58 (59)
37 1rgv_A Ferredoxin; electron tr 85.9 0.24 8.1E-06 38.4 1.2 25 60-87 32-62 (80)
38 3i9v_9 NADH-quinone oxidoreduc 85.4 0.24 8.1E-06 44.3 1.1 24 61-87 94-117 (182)
39 3i9v_3 NADH-quinone oxidoreduc 84.7 0.24 8.3E-06 55.2 1.0 39 61-99 177-232 (783)
40 1jb0_C Photosystem I iron-sulf 84.7 0.22 7.4E-06 38.2 0.4 23 61-86 43-65 (80)
41 2fgo_A Ferredoxin; allochromat 84.7 0.24 8.2E-06 38.6 0.7 25 60-87 32-62 (82)
42 3eun_A Ferredoxin; electron tr 84.1 0.2 6.9E-06 39.2 0.0 27 59-88 31-63 (82)
43 1dax_A Ferredoxin I; electron 82.6 0.14 4.7E-06 37.8 -1.5 23 62-87 41-63 (64)
44 1jnr_B Adenylylsulfate reducta 81.9 0.38 1.3E-05 42.6 0.9 24 61-87 43-66 (150)
45 3j16_B RLI1P; ribosome recycli 81.8 0.26 9.1E-06 53.4 -0.2 28 55-85 45-72 (608)
46 2zvs_A Uncharacterized ferredo 81.0 0.42 1.4E-05 37.5 0.8 26 60-87 32-63 (85)
47 3gyx_B Adenylylsulfate reducta 80.9 0.43 1.5E-05 43.0 0.9 24 61-87 42-65 (166)
48 1rof_A Ferredoxin; electron tr 79.2 0.4 1.4E-05 34.3 0.1 22 62-86 38-59 (60)
49 1f2g_A Ferredoxin II; electron 78.8 0.4 1.4E-05 34.4 -0.0 21 62-85 37-57 (58)
50 2vpz_B NRFC protein; oxidoredu 77.4 0.63 2.1E-05 42.9 0.8 36 61-99 54-102 (195)
51 1h0h_B Formate dehydrogenase ( 76.3 0.37 1.3E-05 45.1 -1.0 26 58-86 101-128 (214)
52 1iqz_A Ferredoxin; iron-sulfer 75.6 0.45 1.5E-05 37.0 -0.6 27 59-88 45-71 (81)
53 2ivf_B Ethylbenzene dehydrogen 74.7 0.7 2.4E-05 46.8 0.4 41 56-99 175-232 (352)
54 1q16_B Respiratory nitrate red 74.5 0.76 2.6E-05 48.9 0.6 37 60-99 179-229 (512)
55 2c42_A Pyruvate-ferredoxin oxi 70.1 1 3.6E-05 52.7 0.5 27 60-87 739-765 (1231)
56 3or1_B Sulfite reductase beta; 69.9 1.2 4.1E-05 45.5 0.9 38 59-99 212-270 (386)
57 1kqf_B FDH-N beta S, formate d 67.9 1.2 4E-05 43.8 0.2 29 56-87 124-152 (294)
58 2h88_B Succinate dehydrogenase 66.5 2.1 7.2E-05 40.8 1.7 18 61-78 154-171 (252)
59 3mm5_A Sulfite reductase, diss 65.7 1.4 4.7E-05 45.7 0.2 29 68-99 260-298 (418)
60 3mm5_B Sulfite reductase, diss 65.6 1.4 4.8E-05 44.7 0.3 37 60-99 202-253 (366)
61 3cf4_A Acetyl-COA decarboxylas 63.6 1 3.5E-05 50.5 -1.3 39 62-100 414-468 (807)
62 1hfe_L Protein (Fe-only hydrog 63.4 2.5 8.7E-05 43.5 1.8 22 61-85 62-83 (421)
63 2wdq_B Succinate dehydrogenase 62.3 2.8 9.6E-05 39.3 1.7 19 60-78 144-162 (238)
64 3bk7_A ABC transporter ATP-bin 61.8 1.5 5.1E-05 47.4 -0.3 21 57-77 61-81 (607)
65 3mm5_B Sulfite reductase, diss 61.0 1.3 4.4E-05 44.9 -1.0 21 57-77 233-253 (366)
66 1ti6_B Pyrogallol hydroxytrans 58.4 3.9 0.00013 39.7 2.0 34 62-99 65-111 (274)
67 3c8y_A Iron hydrogenase 1; dit 56.4 2.8 9.7E-05 44.9 0.7 26 59-87 184-209 (574)
68 2bs2_B Quinol-fumarate reducta 54.6 2.9 9.8E-05 39.4 0.3 17 62-78 148-164 (241)
69 1kf6_B Fumarate reductase iron 54.3 2.5 8.6E-05 39.8 -0.1 19 60-78 143-161 (243)
70 2wdq_B Succinate dehydrogenase 53.8 3.4 0.00012 38.7 0.7 18 61-78 202-219 (238)
71 2h88_B Succinate dehydrogenase 53.2 3.3 0.00011 39.4 0.4 17 62-78 212-228 (252)
72 2bs2_B Quinol-fumarate reducta 51.3 3.4 0.00012 38.9 0.2 17 62-78 205-221 (241)
73 1kf6_B Fumarate reductase iron 49.5 3.6 0.00012 38.7 0.1 17 62-78 201-217 (243)
74 1gte_A Dihydropyrimidine dehyd 48.8 4.3 0.00015 46.4 0.6 23 63-87 984-1006(1025)
75 3mm5_A Sulfite reductase, diss 48.5 4.3 0.00015 42.0 0.5 23 55-77 276-298 (418)
76 3i9v_3 NADH-quinone oxidoreduc 48.0 5.7 0.00019 44.1 1.4 20 64-86 219-238 (783)
77 3m1y_A Phosphoserine phosphata 47.0 69 0.0024 27.6 8.3 71 192-264 80-164 (217)
78 3or1_A Sulfite reductase alpha 46.3 2.8 9.7E-05 43.6 -1.3 29 68-99 277-315 (437)
79 3or1_B Sulfite reductase beta; 46.0 3.4 0.00012 42.1 -0.7 17 60-76 253-269 (386)
80 3um9_A Haloacid dehalogenase, 42.4 1.6E+02 0.0056 25.2 10.1 71 192-264 101-175 (230)
81 2gmh_A Electron transfer flavo 41.2 6.5 0.00022 41.9 0.5 36 66-101 519-567 (584)
82 3vr8_B Iron-sulfur subunit of 38.3 8 0.00027 37.8 0.6 17 62-78 236-252 (282)
83 3l8h_A Putative haloacid dehal 36.7 1.9E+02 0.0065 24.3 9.4 73 192-264 32-124 (179)
84 2no4_A (S)-2-haloacid dehaloge 34.9 1.9E+02 0.0064 25.4 9.4 72 191-264 109-184 (240)
85 3vr8_B Iron-sulfur subunit of 34.0 10 0.00036 37.0 0.6 16 63-78 180-195 (282)
86 2pa8_D DNA-directed RNA polyme 33.1 7.8 0.00027 37.3 -0.5 30 66-98 174-214 (265)
87 2gmh_A Electron transfer flavo 32.2 7.6 0.00026 41.3 -0.8 26 59-87 547-572 (584)
88 2o2x_A Hypothetical protein; s 31.5 2E+02 0.0069 25.3 9.0 73 192-264 61-160 (218)
89 2p9j_A Hypothetical protein AQ 31.4 1.2E+02 0.004 25.3 7.0 65 193-264 42-106 (162)
90 3ib6_A Uncharacterized protein 29.9 2.4E+02 0.0081 24.2 9.0 74 192-265 39-121 (189)
91 3s6j_A Hydrolase, haloacid deh 28.9 1.6E+02 0.0055 25.3 7.7 71 192-264 96-170 (233)
92 1h0h_B Formate dehydrogenase ( 28.8 13 0.00046 34.3 0.4 24 61-87 133-165 (214)
93 2pa8_D DNA-directed RNA polyme 28.0 12 0.00041 36.0 -0.1 16 61-76 199-214 (265)
94 3mc1_A Predicted phosphatase, 27.3 2.1E+02 0.0072 24.5 8.2 70 193-264 92-165 (226)
95 3e58_A Putative beta-phosphogl 25.5 2.2E+02 0.0076 23.7 7.8 71 192-264 94-168 (214)
96 2wm8_A MDP-1, magnesium-depend 25.5 2.9E+02 0.0099 23.5 8.7 71 192-264 73-143 (187)
97 3sd7_A Putative phosphatase; s 23.7 2.9E+02 0.0098 24.0 8.5 70 193-264 116-190 (240)
98 3umb_A Dehalogenase-like hydro 23.4 2.4E+02 0.0081 24.3 7.7 71 192-264 104-178 (233)
99 3qnm_A Haloacid dehalogenase-l 23.3 2.6E+02 0.009 23.9 8.0 70 192-264 112-185 (240)
100 1zrn_A L-2-haloacid dehalogena 22.7 3.7E+02 0.013 23.1 9.4 71 192-264 100-174 (232)
101 3kzx_A HAD-superfamily hydrola 22.4 3.7E+02 0.013 23.0 9.4 70 193-264 109-183 (231)
102 3cf4_A Acetyl-COA decarboxylas 22.2 19 0.00066 40.2 0.1 16 63-78 453-468 (807)
103 1k1e_A Deoxy-D-mannose-octulos 21.4 2.3E+02 0.0079 24.2 7.1 63 194-263 42-104 (180)
104 3cnh_A Hydrolase family protei 21.2 2E+02 0.0067 24.3 6.6 67 194-264 93-164 (200)
105 4eze_A Haloacid dehalogenase-l 21.0 1.5E+02 0.0051 28.6 6.3 72 191-264 183-268 (317)
106 2pib_A Phosphorylated carbohyd 20.2 2.8E+02 0.0095 23.1 7.4 71 192-264 89-163 (216)
No 1
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=95.63 E-value=0.0045 Score=48.77 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=26.9
Q ss_pred CCCCCCccCCcccccccccccccceecCC----------Ccc------cccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLGD----------GMS------RIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~e----------G~~------~c~~vCp~ 99 (465)
...+.|++||.|..+||. .++.+.+. ||. .|.++||.
T Consensus 3 ~~~~~C~~C~~C~~~CP~---~ai~~~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (82)
T 2fgo_A 3 KITDDCINCDVCEPECPN---GAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPV 55 (82)
T ss_dssp CCCTTCCCCCTTGGGCTT---CCEEECSSSEEECTTTCCTTTTTCSSCHHHHHCTT
T ss_pred eeCCCCCChhhHHHHCCh---hccCCCCCeEEEEchhCccCCCcCCCCHhHhhCCc
Confidence 455689999999999996 35555321 355 78888885
No 2
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=95.57 E-value=0.0044 Score=48.60 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=26.7
Q ss_pred CCCCCCccCCcccccccccccccceecC----------CCcc------cccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMS------RIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~----------eG~~------~c~~vCp~ 99 (465)
...+.|++||.|..+||. .++.+.+ .+|. .|.++||.
T Consensus 3 ~~~~~C~~C~~C~~~CP~---~ai~~~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (80)
T 1rgv_A 3 YINDDCTACDACVEECPN---EAITPGDPIYVIDPTKCSECVGAFDEPQCRLVCPA 55 (80)
T ss_dssp CCCSCCCCCCTTTTTCTT---CCEECCSSSCEECTTTCCTTTTTCSSCHHHHHCSS
T ss_pred EeCCCCcChhhHHHHcCh---hccCcCCCeeEEcchhCcCCCCcCCccHHHHhcCc
Confidence 345689999999999995 3555432 1355 78888885
No 3
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=95.25 E-value=0.0074 Score=43.68 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=25.0
Q ss_pred CCCCccCCcccccccccccccceecC----------CCcccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
.+.|++||.|..+||.. ++.+.+ .||+.|.++||.
T Consensus 5 ~~~C~~C~~C~~~CP~~---ai~~~~~~~~~~~~~C~~C~~C~~~CP~ 49 (55)
T 2fdn_A 5 NEACISCGACEPECPVN---AISSGDDRYVIDADTCIDCGACAGVCPV 49 (55)
T ss_dssp CTTCCCCCTTGGGCTTC---CEECCSSSCEECTTTCCCCCHHHHTCTT
T ss_pred cccCcChhhHHHHCCcc---ccCcCCCEEEeccccCcChhChHHHccc
Confidence 45799999999999963 444332 136778888884
No 4
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=95.22 E-value=0.0037 Score=46.68 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=14.9
Q ss_pred CCCCCCccCCccccccc
Q 012354 60 PAKDHCSRCGLCDTYYI 76 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp 76 (465)
++.++|+|||.|..+||
T Consensus 6 id~~~C~~Cg~C~~~CP 22 (64)
T 1dax_A 6 VDQDECIACESCVEIAP 22 (64)
T ss_dssp ECSTTCCSCCHHHHHCT
T ss_pred EccccCCCchHHHHhCC
Confidence 44568999999999999
No 5
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=95.19 E-value=0.005 Score=48.67 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=26.2
Q ss_pred CCCCCccCCcccccccccccccceecC----------CCcc------cccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG----------DGMS------RIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~----------eG~~------~c~~vCp~ 99 (465)
..+.|.|||.|..+||. .++.+.+ .+|. .|.++||.
T Consensus 4 ~~~~C~~C~~C~~~CP~---~ai~~~~~~~~i~~~~C~~C~~~~~~~~C~~~CP~ 55 (82)
T 3eun_A 4 ITDECINCDVCEPECPN---GAISQGDETYVIEPSLCTECVGHYETSQCVEVCPV 55 (82)
T ss_dssp ECTTCCCCCTTGGGCTT---CCEEECSSSEEECGGGCCTTTTTCSSCHHHHHCTT
T ss_pred eCCCCcCccchHHHCCh---hheEcCCCceEEchhhcCCCCCCCCccHHHHhCCc
Confidence 45689999999999996 3555532 1355 78888885
No 6
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=95.12 E-value=0.0047 Score=49.15 Aligned_cols=36 Identities=11% Similarity=0.320 Sum_probs=26.2
Q ss_pred CCCCCccCCcccccccccccccceecCC----------Ccc------cccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLGD----------GMS------RIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~e----------G~~------~c~~vCp~ 99 (465)
..+.|+|||.|..+||. .++.+.+. ||+ .|.++||.
T Consensus 4 ~~~~C~~C~~C~~~CP~---~ai~~~~~~~~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (85)
T 2zvs_A 4 ITKKCINCDMCEPECPN---EAISMGDHIYEINSDKCTECVGHYETPTCQKVCPI 55 (85)
T ss_dssp ECTTCCCCCTTTTTCTT---CCEECCSSSCEECGGGCCTTTTTCSSCHHHHHCSS
T ss_pred eCCcCcChhHHHHHCch---hccCcCCCceEEeChhccCCCCcCCccHhhHhCcC
Confidence 34689999999999995 35554321 355 78888885
No 7
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=95.08 E-value=0.012 Score=42.63 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=15.1
Q ss_pred CCCCCCccCCcccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~ 77 (465)
++.++|+|||.|..+||.
T Consensus 4 i~~~~C~~C~~C~~~Cp~ 21 (59)
T 1dwl_A 4 IDHEECIGCESCVELCPE 21 (59)
T ss_dssp ESSCCCSSCCGGGGTSTT
T ss_pred EChhhCcChhHHHHHCCH
Confidence 345689999999999993
No 8
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=95.01 E-value=0.0053 Score=44.74 Aligned_cols=18 Identities=28% Similarity=0.765 Sum_probs=15.3
Q ss_pred CCCCCCccCCcccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~ 77 (465)
.+.+.|+|||.|..+||.
T Consensus 5 i~~~~C~~C~~C~~~Cp~ 22 (60)
T 1rof_A 5 VDADACIGCGVCENLCPD 22 (60)
T ss_dssp ECTTTCCSCCSSTTTCTT
T ss_pred EchhhCCCChHHHHhCcH
Confidence 345689999999999994
No 9
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=94.89 E-value=0.005 Score=55.54 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=15.5
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
+.+.|++||.|..+||..
T Consensus 49 d~~~Ci~C~~C~~~CP~~ 66 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAY 66 (182)
T ss_dssp SCBSCCCCCHHHHHCTTC
T ss_pred CCccCcccccchhhCCcc
Confidence 456899999999999963
No 10
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=94.62 E-value=0.0077 Score=49.93 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=25.7
Q ss_pred CCCCCccCC--cccccccccccccceecC----------CCcccccccccc
Q 012354 61 AKDHCSRCG--LCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCG--aC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
..+.|++|| .|..+||.+ ++.+.+ .||+.|..+||.
T Consensus 4 ~~~~C~~C~~~~C~~~CP~~---ai~~~~~~~~i~~~~C~~Cg~C~~~CP~ 51 (106)
T 7fd1_A 4 VTDNCIKCKYTDCVEVCPVD---CFYEGPNFLVIHPDECIDCALCEPECPA 51 (106)
T ss_dssp ECGGGTTTCCCHHHHHCTTC---CEEECSSCEEECTTTCCCCCTTGGGCTT
T ss_pred CccccCCccCcHHHHHcCcc---ceEcCCCcEEECcccCCChhhhHHhCCC
Confidence 456899999 999999953 444432 247788899985
No 11
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=94.38 E-value=0.011 Score=42.96 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.0
Q ss_pred CCCCCCccCCcccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~ 77 (465)
++ ++|+|||.|..+||.
T Consensus 4 id-~~C~~C~~C~~~CP~ 20 (58)
T 1f2g_A 4 VN-DDCMACEACVEICPD 20 (58)
T ss_dssp CT-TTCCCCCHHHHHCTT
T ss_pred EC-CcCccchHHHHhCCc
Confidence 45 689999999999995
No 12
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=94.32 E-value=0.014 Score=45.26 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=27.0
Q ss_pred CCCCCCcc--CCcccccccccccccceecC----------CCcccccccccc
Q 012354 60 PAKDHCSR--CGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtG--CGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
+..+.|++ ||.|..+||. .++.+.+ .||+.|..+||.
T Consensus 3 i~~~~C~~c~C~~C~~~Cp~---~ai~~~~~~~~~~~~~C~~Cg~C~~~CP~ 51 (77)
T 1bc6_A 3 VITEPCIGTKDASCVEVCPV---DCIHEGEDQYYIDPDVCIDCGACEAVCPV 51 (77)
T ss_dssp ECCSTTTTCCCCSSTTTCTT---CCEEECSSSEEECTTTCCSCCSHHHHSGG
T ss_pred EeCccCCCCCcchhHHhccc---ccEEeCCCcEEECcccCcCccCCHhhcCc
Confidence 34568999 9999999996 3454432 247788999995
No 13
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=94.21 E-value=0.013 Score=60.94 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=28.0
Q ss_pred CCCCCCccCCcccccccccccccceec---------C---CCccccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL---------G---DGMSRIEGLETVV 100 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~---------~---eG~~~c~~vCp~~ 100 (465)
.+.+.|++||.|..+||.. ++.+. . .+|+.|..+||..
T Consensus 30 ~d~~kCi~Cg~C~~~CP~~---ai~~~~~~~~~i~~~~~C~~Cg~C~~~CP~~ 79 (421)
T 1hfe_L 30 IDEAKCIGCDTCSQYCPTA---AIFGEMGEPHSIPHIEACINCGQCLTHCPEN 79 (421)
T ss_dssp ECTTTCCCCCHHHHHCTTC---CCBCCTTSCCBCCCGGGCCCCCTTGGGCTTC
T ss_pred ECcccCCCccHHHHhcCcC---ceecccccceeecChhhCCchhhHHHhhCcC
Confidence 4566899999999999963 44321 1 2478999999964
No 14
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=94.16 E-value=0.0097 Score=48.69 Aligned_cols=37 Identities=14% Similarity=0.018 Sum_probs=25.8
Q ss_pred CCCCCCccCCcccccccccccccceec----------------C---CCcccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL----------------G---DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~----------------~---eG~~~c~~vCp~ 99 (465)
.+.+.|++||.|..+||.. ++.+. . .+|+.|.++||.
T Consensus 40 id~~~C~~Cg~C~~~CP~~---ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 95 (103)
T 1xer_A 40 VDFDLCIADGSCINACPVN---VFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPV 95 (103)
T ss_dssp EETTTCCCCCHHHHHCTTC---CCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTT
T ss_pred EehhhCCChhhHHHHcCcc---CeecccccCccccccceeecCcccccChhhHHHhccc
Confidence 3445899999999999953 33321 1 246778888985
No 15
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=93.54 E-value=0.015 Score=44.94 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=24.8
Q ss_pred CCCCccCCcccccccccccccceecC------------------CCcccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFLG------------------DGMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~~------------------eG~~~c~~vCp~ 99 (465)
.+.|++||.|..+||.. ++.+.. .+|+.|..+||.
T Consensus 7 ~~~C~~Cg~C~~~CP~~---a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 59 (80)
T 1jb0_C 7 YDTCIGCTQCVRACPTD---VLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPT 59 (80)
T ss_dssp ETTCCCCCHHHHHCTTC---CCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCS
T ss_pred CCcCcChhHHHHHCCcc---cccccccccccccccccCCCCCcCcCcCChhhhCCC
Confidence 45899999999999953 232211 246788899995
No 16
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=93.28 E-value=0.02 Score=47.16 Aligned_cols=37 Identities=14% Similarity=0.019 Sum_probs=26.7
Q ss_pred CCCCCCccC--CcccccccccccccceecC----------CCcccccccccc
Q 012354 60 PAKDHCSRC--GLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGC--GaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
+..+.|++| |.|..+||. .++.+.. .||+.|..+||.
T Consensus 3 i~~~~C~~C~c~~C~~~CP~---~ai~~~~~~~~~~~~~C~~Cg~C~~~CP~ 51 (105)
T 2v2k_A 3 VIAEPCVDVKDKACIEECPV---DCIYEGARMLYIHPDECVDCGACEPVCPV 51 (105)
T ss_dssp EECGGGTTTCCCHHHHHCTT---CCEEECSSCEEECTTTCCCCCCSGGGCTT
T ss_pred EecccCCCCCcChhhhhcCc---cccCcCCCcEEEeCCcCcchhhHHHhCCc
Confidence 345689988 999999996 3444422 247789999996
No 17
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=93.25 E-value=0.019 Score=52.05 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=27.8
Q ss_pred CCCCCCccCC-----cccccccccccccceecCC-------------Ccccccccccc
Q 012354 60 PAKDHCSRCG-----LCDTYYIAHVKDACAFLGD-------------GMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCG-----aC~siCp~~~~~ai~f~~e-------------G~~~c~~vCp~ 99 (465)
++.+.|.||| .|..+||. .++.+..+ ||+.|.++||.
T Consensus 4 id~~~C~gC~~c~~~~C~~~CP~---~ai~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~ 58 (166)
T 3gyx_B 4 VDPSKCDGCKGGEKTACMYICPN---DLMILDPEEMKAFNQEPEACWECYSCIKICPQ 58 (166)
T ss_dssp ECTTTCCCCCSSSCCHHHHHCTT---SCEEEETTTTEEEESCGGGCCCCCHHHHHCSS
T ss_pred EcchhcCCCCCCCcchhHHhCCc---cccEEecCCceeEecCcccCcccChHhHhCCc
Confidence 4566899999 99999996 35554332 47789999996
No 18
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=93.12 E-value=0.021 Score=50.89 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=27.8
Q ss_pred CCCCCCccCC-----cccccccccccccceecC-------------CCccccccccccc
Q 012354 60 PAKDHCSRCG-----LCDTYYIAHVKDACAFLG-------------DGMSRIEGLETVV 100 (465)
Q Consensus 60 ~~k~lCtGCG-----aC~siCp~~~~~ai~f~~-------------eG~~~c~~vCp~~ 100 (465)
+..+.|.||| .|..+||.. ++.+.. .||+.|.++||..
T Consensus 5 vd~~~C~~C~~~~~~~C~~~CP~~---ai~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~ 60 (150)
T 1jnr_B 5 VNPEKCDGCKALERTACEYICPND---LMTLDKEKMKAYNREPDMCWECYSCVKMCPQG 60 (150)
T ss_dssp ECTTTCCSCCSSSSCHHHHHCTTS---CEEEETTTTEEEESCGGGCCCCCHHHHHCTTC
T ss_pred ECcccCCCCCCcccccchhhcCcc---CeEEecCCceeeeeCcccCcCHhHHHHhCCcc
Confidence 4456899999 999999963 444322 2478899999963
No 19
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=93.02 E-value=0.017 Score=45.04 Aligned_cols=36 Identities=11% Similarity=-0.069 Sum_probs=26.0
Q ss_pred CCCCCcc--CCcccccccccccccceecC----------CCcccccccccc
Q 012354 61 AKDHCSR--CGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtG--CGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
..+.|+| ||.|..+||. .++.+.+ .||+.|..+||.
T Consensus 4 ~~~~C~~c~C~~C~~~CP~---~ai~~~~~~~~~~~~~C~~C~~C~~~CP~ 51 (78)
T 1h98_A 4 ICEPCIGVKDQSCVEVCPV---ECIYDGGDQFYIHPEECIDCGACVPACPV 51 (78)
T ss_dssp ECGGGTTTCCCHHHHHCTT---CCEEECSSSEEECTTTCCCCCTHHHHCTT
T ss_pred EchhCCCCCcChhhhhcCc---cceEcCCCEEEECcccCCcHhHHHHhCCc
Confidence 4568999 9999999995 3444432 246788899985
No 20
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=92.63 E-value=0.038 Score=45.64 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=20.5
Q ss_pred CCCCCCCccCCcccccccccccccceecC
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
.++.+.|++||.|..+||. .|+.+..
T Consensus 33 ~i~~~~C~~Cg~C~~~CP~---~ai~~~~ 58 (106)
T 7fd1_A 33 VIHPDECIDCALCEPECPA---QAIFSED 58 (106)
T ss_dssp EECTTTCCCCCTTGGGCTT---CCEEEGG
T ss_pred EECcccCCChhhhHHhCCC---hhhhccc
Confidence 3455689999999999996 5777754
No 21
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=91.98 E-value=0.046 Score=42.81 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=15.1
Q ss_pred CCCCCCccCCccccccc
Q 012354 60 PAKDHCSRCGLCDTYYI 76 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp 76 (465)
++.++|+|||.|..+||
T Consensus 6 vd~~~CigCg~C~~~CP 22 (81)
T 1iqz_A 6 VDKETCIACGACGAAAP 22 (81)
T ss_dssp ECTTTCCCCSHHHHHCT
T ss_pred EecccCcccChhhHhCc
Confidence 45669999999999999
No 22
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=91.85 E-value=0.057 Score=38.84 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=18.0
Q ss_pred CCCCCCccCCccccccccccccccee
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
++.+.|++||.|..+||. .++.+
T Consensus 32 ~~~~~C~~C~~C~~~CP~---~ai~~ 54 (55)
T 2fdn_A 32 IDADTCIDCGACAGVCPV---DAPVQ 54 (55)
T ss_dssp ECTTTCCCCCHHHHTCTT---CCEEE
T ss_pred eccccCcChhChHHHccc---cceec
Confidence 445689999999999996 45543
No 23
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=91.64 E-value=0.053 Score=40.00 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.2
Q ss_pred CCCCCCccCCcccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~ 77 (465)
++.++|+|||.|..+||.
T Consensus 6 id~~~C~~C~~C~~~Cp~ 23 (66)
T 1sj1_A 6 VDQDTCIGDAICASLCPD 23 (66)
T ss_dssp ECTTTCCCCCHHHHHCTT
T ss_pred ECcccCcCchHHHHhCCc
Confidence 345689999999999993
No 24
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=91.63 E-value=0.051 Score=42.02 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=19.1
Q ss_pred CCCCCCccCCcccccccccccccceec
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
++.+.|++||.|..+||. .|+.+.
T Consensus 34 ~~~~~C~~Cg~C~~~CP~---~ai~~~ 57 (77)
T 1bc6_A 34 IDPDVCIDCGACEAVCPV---SAIYHE 57 (77)
T ss_dssp ECTTTCCSCCSHHHHSGG---GSSEET
T ss_pred ECcccCcCccCCHhhcCc---cceEec
Confidence 345589999999999996 577664
No 25
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=91.60 E-value=0.045 Score=64.02 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=16.5
Q ss_pred CCCCCCccCCccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~ 78 (465)
.+.+.|++||.|+.+||..
T Consensus 683 ~d~~kCi~Cg~Cv~vCP~~ 701 (1231)
T 2c42_A 683 WVPENCIQCNQCAFVCPHS 701 (1231)
T ss_dssp ECTTTCCCCCHHHHHCSSC
T ss_pred EeCccCCchhhHHHhCCcc
Confidence 4577999999999999964
No 26
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=91.29 E-value=0.051 Score=42.21 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.1
Q ss_pred CCCCCCccCCcccccccccccccceec
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
+..+.|++||.|..+||. .|+.+.
T Consensus 34 ~~~~~C~~C~~C~~~CP~---~Ai~~~ 57 (78)
T 1h98_A 34 IHPEECIDCGACVPACPV---NAIYPE 57 (78)
T ss_dssp ECTTTCCCCCTHHHHCTT---CCEEEG
T ss_pred ECcccCCcHhHHHHhCCc---cceEec
Confidence 445689999999999996 467654
No 27
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=91.07 E-value=0.042 Score=63.08 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCCCCCCccCCcccccccccccccceecC-----------CCcccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLETV 99 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~-----------eG~~~c~~vCp~ 99 (465)
.++.+.|++||.|..+||.....++.+.+ .||+.|.++||.
T Consensus 947 ~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~~~~~~C~~Cg~C~~~CP~ 998 (1025)
T 1gte_A 947 VIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLPTVTDTCTGCTLCLSVCPI 998 (1025)
T ss_dssp EECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCEEECTTCCCCCHHHHHCSS
T ss_pred EEEcccCcccCHHHHhcCccccCCEEEeCCCceEEeCccCCChhHHHhhCCC
Confidence 45667999999999999952123454432 258899999996
No 28
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=89.90 E-value=0.11 Score=42.70 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=19.7
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
++.+.|++||.|..+||. .|+.+..
T Consensus 34 ~~~~~C~~Cg~C~~~CP~---~Ai~~~~ 58 (105)
T 2v2k_A 34 IHPDECVDCGACEPVCPV---EAIYYED 58 (105)
T ss_dssp ECTTTCCCCCCSGGGCTT---CCEEEGG
T ss_pred EeCCcCcchhhHHHhCCc---cCEEecC
Confidence 345589999999999996 5776653
No 29
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=89.18 E-value=0.11 Score=50.85 Aligned_cols=25 Identities=0% Similarity=-0.294 Sum_probs=15.0
Q ss_pred CCCCCCCccCCcccccccccccccceec
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.++.+.|.|||.|..+||. .++.++
T Consensus 93 ~id~~~CigC~~C~~~CP~---~Ai~~~ 117 (274)
T 1ti6_B 93 LIDPEKAKGKKELLDTCPY---GVMYWN 117 (274)
T ss_dssp EECTTTTTTCGGGGGGCSS---CCCEEE
T ss_pred EechhhccchHHHHhhCcc---CCeEEE
Confidence 3445567777777777774 355554
No 30
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=88.77 E-value=0.11 Score=42.20 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=19.8
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
...+.|++||.|..+||. .||.+..
T Consensus 78 ~~~~~C~~Cg~C~~~CP~---~Ai~~~~ 102 (103)
T 1xer_A 78 VNEQACIFCMACVNVCPV---AAIDVKP 102 (103)
T ss_dssp TTGGGCCCCCHHHHHCTT---CCEEECC
T ss_pred cCcccccChhhHHHhccc---cceEecC
Confidence 345689999999999996 5777653
No 31
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=88.17 E-value=0.083 Score=52.13 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=21.5
Q ss_pred CCCCccCC--ccccccccccccccee--------cC---CCcccccccccc
Q 012354 62 KDHCSRCG--LCDTYYIAHVKDACAF--------LG---DGMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCG--aC~siCp~~~~~ai~f--------~~---eG~~~c~~vCp~ 99 (465)
.+.|.+|+ .|..+||.. .|+.. +. .||+.|...||.
T Consensus 97 ~~~C~~C~~~~C~~~CP~~--gAi~~~~~g~v~id~~~CigCg~C~~~CP~ 145 (294)
T 1kqf_B 97 KDGCMHCEDPGCLKACPSA--GAIIQYANGIVDFQSENCIGCGYCIAGCPF 145 (294)
T ss_dssp EESCCCBSSCHHHHHCCST--TSEEEETTSCEEECGGGCCCCCHHHHHCTT
T ss_pred cccCCCcCChhhhhhCCcc--CccccccccceEeCcccCCCcchhhhcCCC
Confidence 45688888 788888741 12222 22 246677777775
No 32
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=88.09 E-value=0.058 Score=58.14 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=28.2
Q ss_pred CCCCCCCccCCccccccccc-ccccceecC--------------------CCcccccccccc
Q 012354 59 YPAKDHCSRCGLCDTYYIAH-VKDACAFLG--------------------DGMSRIEGLETV 99 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~-~~~ai~f~~--------------------eG~~~c~~vCp~ 99 (465)
..+.+.|++||.|+.+||.. ...++.+.+ .+|+.|..+||.
T Consensus 141 ~~d~~kCi~Cg~Cv~~CP~~~~~~ai~~~~~g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~ 202 (574)
T 3c8y_A 141 TVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPV 202 (574)
T ss_dssp EEEGGGCCCCCHHHHHHHHHHSCCCSEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSS
T ss_pred eeCcccCcCCCCccchhCchhcCCceeeccCCccceecccccceechhhCCcchhHHHhhcc
Confidence 44567999999999999951 012333321 147899999996
No 33
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=87.96 E-value=0.12 Score=52.59 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=7.7
Q ss_pred CCCccCC--ccccccc
Q 012354 63 DHCSRCG--LCDTYYI 76 (465)
Q Consensus 63 ~lCtGCG--aC~siCp 76 (465)
+.|.+|+ .|..+||
T Consensus 149 ~~C~~C~~~~Cv~~CP 164 (352)
T 2ivf_B 149 RMCNHCTNPACLAACP 164 (352)
T ss_dssp ECCCCCSSCHHHHHCT
T ss_pred CCCcCcCCccccccCC
Confidence 3455555 5555555
No 34
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=87.63 E-value=0.13 Score=54.71 Aligned_cols=18 Identities=6% Similarity=-0.104 Sum_probs=12.2
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 012354 239 VDNGTREGLDKFLKAASS 256 (465)
Q Consensus 239 ~Gv~S~~~~~~~L~~~~~ 256 (465)
.-+.+.+.+.+.++.+++
T Consensus 432 d~~lT~~e~~~m~r~~~i 449 (512)
T 1q16_B 432 EVGLTEAQAQEMYRYLAI 449 (512)
T ss_dssp HTTCCHHHHHHHHHHHTT
T ss_pred hcCCCHHHHHHHHHHhCc
Confidence 345667777777777765
No 35
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=85.97 E-value=0.19 Score=46.55 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=17.4
Q ss_pred CCCCCCCccCCcccccccccccccceecC
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
.++.+.|+|||.|..+||. .++.+..
T Consensus 84 ~id~~~CigC~~C~~~CP~---~Ai~~~~ 109 (195)
T 2vpz_B 84 LVDPKKCIACGACIAACPY---DARYLHP 109 (195)
T ss_dssp EECTTTCCCCCHHHHHCTT---CCCEECT
T ss_pred eecCCCCCCcChhHhhCCC---CCeEECC
Confidence 3445578888888888884 4565543
No 36
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=85.95 E-value=0.33 Score=34.71 Aligned_cols=22 Identities=5% Similarity=-0.174 Sum_probs=17.8
Q ss_pred CCCCCccCCccccccccccccccee
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
..+.|++||.|..+||. .|+.+
T Consensus 37 ~~~~c~~C~~C~~~CP~---~Ai~~ 58 (59)
T 1dwl_A 37 PDSTAECAQDAIDACPV---EAISK 58 (59)
T ss_dssp TTCCCGGGGTGGGGSTT---CCEEE
T ss_pred ChhhhhHHHHHHHhCCH---hhEEc
Confidence 45589999999999996 46654
No 37
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=85.90 E-value=0.24 Score=38.44 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=19.7
Q ss_pred CCCCCCccCC------cccccccccccccceecC
Q 012354 60 PAKDHCSRCG------LCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCG------aC~siCp~~~~~ai~f~~ 87 (465)
++.+.|++|| .|..+||. .|+.+..
T Consensus 32 ~~~~~C~~C~~~~~~~~C~~~CP~---~Ai~~~~ 62 (80)
T 1rgv_A 32 IDPTKCSECVGAFDEPQCRLVCPA---DCIPDNP 62 (80)
T ss_dssp ECTTTCCTTTTTCSSCHHHHHCSS---CCCCBCG
T ss_pred EcchhCcCCCCcCCccHHHHhcCc---ccEEecC
Confidence 4456899999 99999996 5776653
No 38
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=85.40 E-value=0.24 Score=44.29 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.4
Q ss_pred CCCCCccCCcccccccccccccceecC
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
+...|++||+|..+||. .|+.|..
T Consensus 94 ~~~~C~~C~~C~~~CP~---~Ai~~~~ 117 (182)
T 3i9v_9 94 NMLRCIFCGLCEEACPT---GAIVLGY 117 (182)
T ss_dssp ETTTCCCCCHHHHHCSS---SCEEECS
T ss_pred CCCcCcChhChhhhCCc---cceEecC
Confidence 34579999999999996 5777754
No 39
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=84.73 E-value=0.24 Score=55.19 Aligned_cols=39 Identities=18% Similarity=0.424 Sum_probs=25.3
Q ss_pred CCCCCccCCccccccccc-ccccceecC----------------CCcccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH-VKDACAFLG----------------DGMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~-~~~ai~f~~----------------eG~~~c~~vCp~ 99 (465)
+.+.|.+||.|+.+||.. ...++.+.. .+|+.|.++||.
T Consensus 177 d~~~CI~C~~Cv~~C~~~~~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~ 232 (783)
T 3i9v_3 177 DRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPV 232 (783)
T ss_dssp CTTTCCCCCHHHHHHHHTTCCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSS
T ss_pred chhhCCCccHHHHHhhhhcCCceeeeecCCCccEEccCCCCCCCccchhHHhhccc
Confidence 567899999999999531 012333321 247788888885
No 40
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=84.71 E-value=0.22 Score=38.24 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=18.2
Q ss_pred CCCCCccCCcccccccccccccceec
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
..+.|++||.|..+||. .|+.+.
T Consensus 43 ~~~~C~~Cg~C~~~CP~---~ai~~~ 65 (80)
T 1jb0_C 43 RTEDCVGCKRCETACPT---DFLSIR 65 (80)
T ss_dssp TGGGCCCCCHHHHHCCS---SSCSEE
T ss_pred CCCcCcCcCChhhhCCC---CccEee
Confidence 34689999999999996 466554
No 41
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=84.67 E-value=0.24 Score=38.57 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=19.7
Q ss_pred CCCCCCccCC------cccccccccccccceecC
Q 012354 60 PAKDHCSRCG------LCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCG------aC~siCp~~~~~ai~f~~ 87 (465)
++.+.|++|| .|..+||. .|+.+..
T Consensus 32 ~~~~~C~~C~~~~~~~~C~~~CP~---~Ai~~~~ 62 (82)
T 2fgo_A 32 IDPNLCTECVGHYDEPQCQQVCPV---DCIPLDD 62 (82)
T ss_dssp ECTTTCCTTTTTCSSCHHHHHCTT---CCCCBCT
T ss_pred EEchhCccCCCcCCCCHhHhhCCc---ccEEccC
Confidence 3455899999 99999996 5777654
No 42
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=84.13 E-value=0.2 Score=39.16 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=20.8
Q ss_pred CCCCCCCccCC------cccccccccccccceecCC
Q 012354 59 YPAKDHCSRCG------LCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 59 ~~~k~lCtGCG------aC~siCp~~~~~ai~f~~e 88 (465)
.++.+.|.+|| .|..+||. .|+.+..+
T Consensus 31 ~i~~~~C~~C~~~~~~~~C~~~CP~---~Ai~~~~~ 63 (82)
T 3eun_A 31 VIEPSLCTECVGHYETSQCVEVCPV---DAIIKDPS 63 (82)
T ss_dssp EECGGGCCTTTTTCSSCHHHHHCTT---CCEEECGG
T ss_pred EEchhhcCCCCCCCCccHHHHhCCc---cceEEcCC
Confidence 34456899999 99999996 57777543
No 43
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=82.55 E-value=0.14 Score=37.81 Aligned_cols=23 Identities=0% Similarity=-0.200 Sum_probs=18.7
Q ss_pred CCCCccCCcccccccccccccceecC
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
.+.|.+||.|..+||. .||.+.+
T Consensus 41 ~~~C~~C~~C~~~CP~---~Ai~~~~ 63 (64)
T 1dax_A 41 GASQEEVEEAMDTCPV---QCIHWED 63 (64)
T ss_dssp GSCHHHHHHHHHHSSS---CCEECCC
T ss_pred CcchhHHHHHHHhCCH---hhEeeec
Confidence 4689999999999996 5776653
No 44
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=81.87 E-value=0.38 Score=42.57 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=19.2
Q ss_pred CCCCCccCCcccccccccccccceecC
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
+.+.|++||.|..+||. .||.+..
T Consensus 43 d~~~C~~Cg~Cv~~CP~---~AI~~~~ 66 (150)
T 1jnr_B 43 EPDMCWECYSCVKMCPQ---GAIDVRG 66 (150)
T ss_dssp CGGGCCCCCHHHHHCTT---CCEEECC
T ss_pred CcccCcCHhHHHHhCCc---cceEecC
Confidence 34589999999999996 5777754
No 45
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=81.83 E-value=0.26 Score=53.40 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=22.3
Q ss_pred CCCCCCCCCCCccCCccccccccccccccee
Q 012354 55 PGGTYPAKDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 55 ~~~~~~~k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
.+...++.++|.|||.|+-.||- .||..
T Consensus 45 ~~~~~i~~~~c~~~~~~~~~cp~---~~i~i 72 (608)
T 3j16_B 45 SKIAFISEILCIGCGICVKKCPF---DAIQI 72 (608)
T ss_dssp TTEEEECTTTCCCCCHHHHHCSS---CCEEE
T ss_pred CCceEEehhhccccccccccCCc---cceEE
Confidence 34467889999999999999995 45554
No 46
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=81.00 E-value=0.42 Score=37.55 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=19.6
Q ss_pred CCCCCCccCC------cccccccccccccceecC
Q 012354 60 PAKDHCSRCG------LCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCG------aC~siCp~~~~~ai~f~~ 87 (465)
+..+.|++|| .|..+||.. .|+.+..
T Consensus 32 ~~~~~C~~C~~~~~~~~C~~~CP~~--~Ai~~~~ 63 (85)
T 2zvs_A 32 INSDKCTECVGHYETPTCQKVCPIP--NTIVKDP 63 (85)
T ss_dssp ECGGGCCTTTTTCSSCHHHHHCSSC--CEEECTT
T ss_pred EeChhccCCCCcCCccHhhHhCcCC--CCEEecC
Confidence 3456899999 999999951 4676654
No 47
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=80.88 E-value=0.43 Score=42.98 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=19.2
Q ss_pred CCCCCccCCcccccccccccccceecC
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
+.+.|++||.|+.+||. .|+.+..
T Consensus 42 d~~~C~~Cg~Cv~~CP~---~Ai~~~~ 65 (166)
T 3gyx_B 42 EPEACWECYSCIKICPQ---GAITARP 65 (166)
T ss_dssp CGGGCCCCCHHHHHCSS---CCEEECC
T ss_pred CcccCcccChHhHhCCc---cceEEec
Confidence 34589999999999996 5777754
No 48
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=79.23 E-value=0.4 Score=34.32 Aligned_cols=22 Identities=5% Similarity=-0.159 Sum_probs=17.8
Q ss_pred CCCCccCCcccccccccccccceec
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.+.|.+||.|..+||. .|+.+.
T Consensus 38 ~~~c~~C~~C~~~CP~---~Ai~~~ 59 (60)
T 1rof_A 38 ETDLPCAKDAADSCPT---GAISVE 59 (60)
T ss_dssp SCCSTTHHHHHHHCTT---CCEECC
T ss_pred hhhHHHHHHHHHhCCH---hHEEEe
Confidence 4589999999999996 566653
No 49
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=78.75 E-value=0.4 Score=34.38 Aligned_cols=21 Identities=10% Similarity=-0.162 Sum_probs=17.0
Q ss_pred CCCCccCCccccccccccccccee
Q 012354 62 KDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
.+.|.+||.|..+||. .||.+
T Consensus 37 ~~~C~~C~~C~~~CP~---~Ai~~ 57 (58)
T 1f2g_A 37 DSDLDCVEEAIDSCPA---EAIVR 57 (58)
T ss_dssp TCCSTHHHHHHHTCSS---CCCBC
T ss_pred ccchHHHHHHHhhCCh---hhEEe
Confidence 4589999999999996 46654
No 50
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=77.35 E-value=0.63 Score=42.93 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=26.6
Q ss_pred CCCCCccCC--cccccccccccccceecCC-----------Ccccccccccc
Q 012354 61 AKDHCSRCG--LCDTYYIAHVKDACAFLGD-----------GMSRIEGLETV 99 (465)
Q Consensus 61 ~k~lCtGCG--aC~siCp~~~~~ai~f~~e-----------G~~~c~~vCp~ 99 (465)
....|.+|+ .|..+||. .|+.+..+ ||+.|..+||.
T Consensus 54 ~~~~C~~C~~p~C~~~CP~---gAi~~~~~g~~~id~~~CigC~~C~~~CP~ 102 (195)
T 2vpz_B 54 RPEQCLHCENPPCVPVCPT---GASYQTKDGLVLVDPKKCIACGACIAACPY 102 (195)
T ss_dssp EEEECCCCSSCTTTTTCSS---SCEEECTTSCEEECTTTCCCCCHHHHHCTT
T ss_pred CcccCcCccCcHHHHhcCC---CceecccccceeecCCCCCCcChhHhhCCC
Confidence 345899999 89999996 34544322 47889999995
No 51
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=76.29 E-value=0.37 Score=45.14 Aligned_cols=26 Identities=4% Similarity=-0.251 Sum_probs=17.8
Q ss_pred CCCCCCCCc--cCCcccccccccccccceec
Q 012354 58 TYPAKDHCS--RCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 58 ~~~~k~lCt--GCGaC~siCp~~~~~ai~f~ 86 (465)
..++.+.|+ |||.|..+||. .++.+.
T Consensus 101 v~id~~~C~~~~C~~C~~~CP~---~Ai~~~ 128 (214)
T 1h0h_B 101 VLFTPKTKDLEDYESVISACPY---DVPRKV 128 (214)
T ss_dssp EEECGGGGGCSCHHHHHHHCTT---CCCEEC
T ss_pred EEEeHHHCccccccHHHHhcCC---CCeEec
Confidence 344556788 88888888885 456554
No 52
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=75.63 E-value=0.45 Score=36.96 Aligned_cols=27 Identities=4% Similarity=-0.284 Sum_probs=21.3
Q ss_pred CCCCCCCccCCcccccccccccccceecCC
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLGD 88 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~e 88 (465)
.++.++|.+||.|+.+||. .||.+..+
T Consensus 45 ~~~~~~c~~C~~C~~~CP~---~AI~~~~~ 71 (81)
T 1iqz_A 45 EVPDILIDDMMDAFEGCPT---DSIKVADE 71 (81)
T ss_dssp CCCGGGHHHHHHHHHHCTT---CCEEEESS
T ss_pred CCCHHHHHHHHHHHHhCCH---hHEEEecC
Confidence 3445689999999999996 68877654
No 53
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=74.69 E-value=0.7 Score=46.82 Aligned_cols=41 Identities=12% Similarity=-0.042 Sum_probs=30.0
Q ss_pred CCCCCCCCCCccCCcccccccccccccceecCC--------Ccc---------cccccccc
Q 012354 56 GGTYPAKDHCSRCGLCDTYYIAHVKDACAFLGD--------GMS---------RIEGLETV 99 (465)
Q Consensus 56 ~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~e--------G~~---------~c~~vCp~ 99 (465)
|...++.+.|+|||.|..+||. .++.|... +|. .|.+.||.
T Consensus 175 g~v~id~~kCigCg~Cv~aCP~---~Ai~~~~~~~~~~kC~~C~~r~~~g~~paCv~~CP~ 232 (352)
T 2ivf_B 175 GIVLVDQERCKGHRHCVEACPY---KAIYFNPVSQTSEKCILCYPRIEKGIANACNRQCPG 232 (352)
T ss_dssp CCEEECTTTCCCCCHHHHHCTT---CCEEEETTTTEEEECCTTHHHHTTTBCCHHHHTCTT
T ss_pred CeEEechhhcCCchHHHhhcCc---cceecccccccccccCCCcchhhcCCCChHHHhcCc
Confidence 3344567899999999999996 57777542 352 67788884
No 54
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=74.47 E-value=0.76 Score=48.85 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=26.1
Q ss_pred CCCCCCccCC--cccccccccccccceec---------C---CCcccccccccc
Q 012354 60 PAKDHCSRCG--LCDTYYIAHVKDACAFL---------G---DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lCtGCG--aC~siCp~~~~~ai~f~---------~---eG~~~c~~vCp~ 99 (465)
...+.|.+|+ .|..+||. .||.+. . .||+.|.++||.
T Consensus 179 ~~~~~C~~C~~~~Cv~aCP~---gAI~~~~~~g~v~id~~kCigCg~Cv~~CP~ 229 (512)
T 1q16_B 179 YLPRLCEHCLNPACVATCPS---GAIYKREEDGIVLIDQDKCRGWRMCITGCPY 229 (512)
T ss_dssp EEEECCCCCSSCHHHHTCTT---CCEEEETTTCCEEECTTTCCCCCCHHHHCTT
T ss_pred ecCccCcCCCCchhhhhCCc---CcEEeecCCCeEEECHHHCCCchHHHhhCCc
Confidence 3456899999 69999995 355442 1 247788888985
No 55
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=70.12 E-value=1 Score=52.67 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=20.4
Q ss_pred CCCCCCccCCcccccccccccccceecC
Q 012354 60 PAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
++.+.|+|||.|+.+||.+ ..|+.|..
T Consensus 739 v~~~~C~gCG~Cv~vCP~~-~~AI~~~~ 765 (1231)
T 2c42_A 739 INTLDCMGCGNCADICPPK-EKALVMQP 765 (1231)
T ss_dssp ECTTTCCCCCHHHHHCSSS-SCSEEEEE
T ss_pred echhhCCChhHHHhhCCCC-ccCeEEec
Confidence 3456899999999999962 25777754
No 56
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=69.86 E-value=1.2 Score=45.51 Aligned_cols=38 Identities=5% Similarity=-0.182 Sum_probs=26.5
Q ss_pred CCCCCCCc---cCCccccccccccccccee---------------cC---CCcccccccccc
Q 012354 59 YPAKDHCS---RCGLCDTYYIAHVKDACAF---------------LG---DGMSRIEGLETV 99 (465)
Q Consensus 59 ~~~k~lCt---GCGaC~siCp~~~~~ai~f---------------~~---eG~~~c~~vCp~ 99 (465)
.++.+.|. +|+.|.++||.. ||.+ +. -+|+.|.++||.
T Consensus 212 ~id~e~~~~~Ce~~~cv~~CPt~---AI~~~~~~~~g~~~~~v~id~~~Ci~Cg~C~~~CP~ 270 (386)
T 3or1_B 212 MIDHENLAELCEIPLAVAACPTA---AVKPITAEVNGQKVKSVAINNDRCMYCGNCYTMCPA 270 (386)
T ss_dssp CCCTTTHHHHCCHHHHHHHCTTC---CEEEEEEEETTEEEEEEEECTTTCCCCCHHHHHCTT
T ss_pred eechhhhcccccchhhhhhCchh---hccccccccCCccccccccCCCcCCccccHHHhCcH
Confidence 44555653 669999999963 5544 22 268899999996
No 57
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=67.86 E-value=1.2 Score=43.83 Aligned_cols=29 Identities=17% Similarity=0.238 Sum_probs=22.4
Q ss_pred CCCCCCCCCCccCCcccccccccccccceecC
Q 012354 56 GGTYPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 56 ~~~~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
|...++.+.|+|||.|..+||. .++.++.
T Consensus 124 g~v~id~~~CigCg~C~~~CP~---~ai~~~~ 152 (294)
T 1kqf_B 124 GIVDFQSENCIGCGYCIAGCPF---NIPRLNK 152 (294)
T ss_dssp SCEEECGGGCCCCCHHHHHCTT---CCCEEET
T ss_pred cceEeCcccCCCcchhhhcCCC---CCcEecC
Confidence 4445677899999999999995 4666654
No 58
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=66.49 E-value=2.1 Score=40.81 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.4
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
....|++||+|.++||..
T Consensus 154 ~~~~Ci~CG~C~~~CP~~ 171 (252)
T 2h88_B 154 GLYECILCACCSTSCPSY 171 (252)
T ss_dssp TTTTCCCCCTTGGGCHHH
T ss_pred hHHhchhhCcchhhCCCC
Confidence 456799999999999964
No 59
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=65.66 E-value=1.4 Score=45.70 Aligned_cols=29 Identities=7% Similarity=-0.206 Sum_probs=21.8
Q ss_pred CCcccccccccccccceecC----------CCcccccccccc
Q 012354 68 CGLCDTYYIAHVKDACAFLG----------DGMSRIEGLETV 99 (465)
Q Consensus 68 CGaC~siCp~~~~~ai~f~~----------eG~~~c~~vCp~ 99 (465)
|+.|...||. .||.+++ -||..|.++||.
T Consensus 260 ~~~cv~~CPt---~Ai~~~~~~~~id~~~Ci~Cg~Ci~~CP~ 298 (418)
T 3mm5_A 260 ENEVVKLCPT---GAIKWDGKELTIDNRECVRCMHCINKMPK 298 (418)
T ss_dssp HHHTGGGCTT---CCEEECSSCEEECTTTCCCCCHHHHHCTT
T ss_pred CccccccCCc---cccccCCceeEEChhhcCccChhHHhCcH
Confidence 3889999996 4666643 147889999996
No 60
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=65.56 E-value=1.4 Score=44.66 Aligned_cols=37 Identities=8% Similarity=-0.152 Sum_probs=26.7
Q ss_pred CCCCCC-ccC--Ccccccccccccccceec---------C---CCcccccccccc
Q 012354 60 PAKDHC-SRC--GLCDTYYIAHVKDACAFL---------G---DGMSRIEGLETV 99 (465)
Q Consensus 60 ~~k~lC-tGC--GaC~siCp~~~~~ai~f~---------~---eG~~~c~~vCp~ 99 (465)
++.+.| .+| +.|..+||. .||.+. . -||+.|.++||.
T Consensus 202 id~~~c~~~Ce~~~Cv~~CP~---~AI~~~~~~~~~~id~~~C~~Cg~C~~~CP~ 253 (366)
T 3mm5_B 202 PNDEAIRKTCEIPSTVAACPT---GALKPDMKNKTIKVDVEKCMYCGNCYTMCPG 253 (366)
T ss_dssp CCHHHHHHHCCHHHHHHTCTT---CCEEEETTTTEEEECGGGCCCCCHHHHHCTT
T ss_pred EcchhccccccccchhccCCc---cceEecCCCCeEEEehhhCCCcchHHHhCCH
Confidence 344456 566 999999996 466553 1 268899999996
No 61
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=63.60 E-value=1 Score=50.46 Aligned_cols=39 Identities=23% Similarity=0.381 Sum_probs=26.0
Q ss_pred CCCCccCCccccccccccc--ccceec--------------CCCccccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAHVK--DACAFL--------------GDGMSRIEGLETVV 100 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~~~--~ai~f~--------------~eG~~~c~~vCp~~ 100 (465)
.+.|++||.|..+||.... ..+.+. -.+|+.|..+||..
T Consensus 414 ~~~Ci~CG~C~~~CP~~~~~~~il~~~~~G~~~~~~~~~~~Ci~Cg~C~~vCP~g 468 (807)
T 3cf4_A 414 VAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHDTCIGCRRCEQVCKKE 468 (807)
T ss_dssp HHHCCCCCHHHHHCTTCCCHHHHHHHHHTTCTHHHHHHHHHCCCCCHHHHHCTTC
T ss_pred HHhCCCCCchhhhCCCCCchHHHHHHHHcCChhhhhhchhhccchhhHHHhCCCC
Confidence 4579999999999996421 111000 02478999999963
No 62
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=63.38 E-value=2.5 Score=43.50 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.6
Q ss_pred CCCCCccCCccccccccccccccee
Q 012354 61 AKDHCSRCGLCDTYYIAHVKDACAF 85 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~~~~ai~f 85 (465)
+.+.|++||.|..+||. .|+.+
T Consensus 62 ~~~~C~~Cg~C~~~CP~---~Ai~~ 83 (421)
T 1hfe_L 62 HIEACINCGQCLTHCPE---NAIYE 83 (421)
T ss_dssp CGGGCCCCCTTGGGCTT---CCEEE
T ss_pred ChhhCCchhhHHHhhCc---CCccc
Confidence 56689999999999996 57766
No 63
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=62.28 E-value=2.8 Score=39.31 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=15.9
Q ss_pred CCCCCCccCCccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~ 78 (465)
.+...|++||.|.++||..
T Consensus 144 ~~~~~Ci~Cg~C~~~CP~~ 162 (238)
T 2wdq_B 144 DGLYECILCACCSTSCPSF 162 (238)
T ss_dssp TTTTTCCCCCTTGGGCHHH
T ss_pred hccccccccCCchhhCcCC
Confidence 3466899999999999953
No 64
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=61.81 E-value=1.5 Score=47.43 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=18.0
Q ss_pred CCCCCCCCCccCCcccccccc
Q 012354 57 GTYPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 57 ~~~~~k~lCtGCGaC~siCp~ 77 (465)
...++.++|.|||.|...||-
T Consensus 61 ~~~i~e~~c~gc~~~~~~~p~ 81 (607)
T 3bk7_A 61 KPIIQEASCTGCGICVHKCPF 81 (607)
T ss_dssp EEEECTTTCCCCCHHHHHCSS
T ss_pred cceeeecccCccccccCCCCc
Confidence 356678899999999999994
No 65
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=60.97 E-value=1.3 Score=44.91 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=13.0
Q ss_pred CCCCCCCCCccCCcccccccc
Q 012354 57 GTYPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 57 ~~~~~k~lCtGCGaC~siCp~ 77 (465)
...++.+.|.+||.|..+||.
T Consensus 233 ~~~id~~~C~~Cg~C~~~CP~ 253 (366)
T 3mm5_B 233 TIKVDVEKCMYCGNCYTMCPG 253 (366)
T ss_dssp EEEECGGGCCCCCHHHHHCTT
T ss_pred eEEEehhhCCCcchHHHhCCH
Confidence 344555666666666666664
No 66
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=58.39 E-value=3.9 Score=39.73 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=25.3
Q ss_pred CCCCccCCc--cccccccccccccee--------cC---CCcccccccccc
Q 012354 62 KDHCSRCGL--CDTYYIAHVKDACAF--------LG---DGMSRIEGLETV 99 (465)
Q Consensus 62 k~lCtGCGa--C~siCp~~~~~ai~f--------~~---eG~~~c~~vCp~ 99 (465)
...|.+|+. |..+||. |+.. +. .||..|.+.||.
T Consensus 65 ~~~C~~C~~p~C~~~CP~----Ai~~~~~g~v~id~~~CigC~~C~~~CP~ 111 (274)
T 1ti6_B 65 PTPCMHCENAPCVAKGNG----AVYQREDGIVLIDPEKAKGKKELLDTCPY 111 (274)
T ss_dssp EECCCCCTTCHHHHHTTT----SEEECTTSCEEECTTTTTTCGGGGGGCSS
T ss_pred CCcCCCCCChHHHhhChH----HhhhccCCcEEechhhccchHHHHhhCcc
Confidence 457999998 9999994 3332 22 257889999995
No 67
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=56.42 E-value=2.8 Score=44.89 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=20.5
Q ss_pred CCCCCCCccCCcccccccccccccceecC
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
.++.+.|.+||.|..+||. .|+.+..
T Consensus 184 ~i~~~~Ci~Cg~Cv~~CP~---gAi~~~~ 209 (574)
T 3c8y_A 184 CFDDTNCLLCGQCIIACPV---AALSEKS 209 (574)
T ss_dssp CGGGSSCCCCCHHHHHCSS---TTEEECC
T ss_pred eechhhCCcchhHHHhhcc---CCccccc
Confidence 3456789999999999996 5776653
No 68
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=54.65 E-value=2.9 Score=39.38 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=14.7
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
...|++||+|.++||..
T Consensus 148 ~~~Ci~Cg~C~~~CP~~ 164 (241)
T 2bs2_B 148 LDRCIECGCCIAACGTK 164 (241)
T ss_dssp HHTCCCCCHHHHTCHHH
T ss_pred hhhhhccCcCcccCCCC
Confidence 34799999999999964
No 69
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=54.26 E-value=2.5 Score=39.77 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=15.9
Q ss_pred CCCCCCccCCccccccccc
Q 012354 60 PAKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp~~ 78 (465)
...+.|++||.|..+||..
T Consensus 143 ~~~~~Ci~Cg~C~~~CP~~ 161 (243)
T 1kf6_B 143 HQFSGCINCGLCYAACPQF 161 (243)
T ss_dssp GGGGCCCCCCHHHHHCHHH
T ss_pred hhhhhccccCccccccCCC
Confidence 4456899999999999964
No 70
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=53.77 E-value=3.4 Score=38.71 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=15.3
Q ss_pred CCCCCccCCccccccccc
Q 012354 61 AKDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp~~ 78 (465)
....|+.||.|..+||..
T Consensus 202 ~~~~C~~Cg~C~~vCP~g 219 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKG 219 (238)
T ss_dssp TTTTCCCCCHHHHHCTTC
T ss_pred CCCcCcccchhhhhcCCC
Confidence 445799999999999964
No 71
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=53.20 E-value=3.3 Score=39.45 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=14.8
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
-..|+.||.|..+||++
T Consensus 212 ~~~C~~Cg~C~~~CP~~ 228 (252)
T 2h88_B 212 LYRCHTIMNCTRTCPKG 228 (252)
T ss_dssp TTTCCCCCHHHHHCTTC
T ss_pred CCcCccccchhhhcCCC
Confidence 35799999999999974
No 72
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=51.31 E-value=3.4 Score=38.87 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=14.7
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
-..|++||.|..+||++
T Consensus 205 ~~~C~~Cg~C~~vCP~~ 221 (241)
T 2bs2_B 205 VFGCMTLLACHDVCPKN 221 (241)
T ss_dssp GGGCCCCCHHHHHCTTC
T ss_pred cccCcccChhhHhcCCC
Confidence 34799999999999974
No 73
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=49.54 E-value=3.6 Score=38.68 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=14.7
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
...|++||.|..+||..
T Consensus 201 ~~~C~~Cg~C~~vCP~g 217 (243)
T 1kf6_B 201 VWSCTFVGYCSEVCPKH 217 (243)
T ss_dssp GGGCCCCCHHHHHCTTC
T ss_pred cccCcccCCcchhCCCC
Confidence 45799999999999974
No 74
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=48.83 E-value=4.3 Score=46.44 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=18.4
Q ss_pred CCCccCCcccccccccccccceecC
Q 012354 63 DHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
+.|++||.|..+||. ..||.+..
T Consensus 984 ~~C~~Cg~C~~~CP~--~~Ai~~~~ 1006 (1025)
T 1gte_A 984 DTCTGCTLCLSVCPI--IDCIRMVS 1006 (1025)
T ss_dssp TTCCCCCHHHHHCSS--TTTEEEEE
T ss_pred ccCCChhHHHhhCCC--CCCEEEec
Confidence 789999999999995 14776653
No 75
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=48.50 E-value=4.3 Score=41.98 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCccCCcccccccc
Q 012354 55 PGGTYPAKDHCSRCGLCDTYYIA 77 (465)
Q Consensus 55 ~~~~~~~k~lCtGCGaC~siCp~ 77 (465)
.+...++.+.|.+||.|..+||.
T Consensus 276 ~~~~~id~~~Ci~Cg~Ci~~CP~ 298 (418)
T 3mm5_A 276 GKELTIDNRECVRCMHCINKMPK 298 (418)
T ss_dssp SSCEEECTTTCCCCCHHHHHCTT
T ss_pred CceeEEChhhcCccChhHHhCcH
Confidence 34445566678888888888875
No 76
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=47.97 E-value=5.7 Score=44.13 Aligned_cols=20 Identities=15% Similarity=-0.091 Sum_probs=16.2
Q ss_pred CCccCCcccccccccccccceec
Q 012354 64 HCSRCGLCDTYYIAHVKDACAFL 86 (465)
Q Consensus 64 lCtGCGaC~siCp~~~~~ai~f~ 86 (465)
.|++||.|..+||. .|+...
T Consensus 219 ~C~~CG~Cv~vCP~---gAl~~~ 238 (783)
T 3i9v_3 219 PSGFSGNITDICPV---GALLDL 238 (783)
T ss_dssp CSTTTTTHHHHCSS---SSEEEG
T ss_pred CCccchhHHhhccc---Cceecc
Confidence 69999999999996 455543
No 77
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=47.01 E-value=69 Score=27.65 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=44.3
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCCCc----eE----------EEcccCCCCCCHHHHHHHHHHhCCC
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK----LY----------VLGTNCVDNGTREGLDKFLKAASSE 257 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~e~----L~----------~Igl~C~Gv~S~~~~~~~L~~~~~~ 257 (465)
+...++.+++.|.+-+++++.+ -..++.+.+.++.+. ++ +.+..|.+.|.+..++..++.++++
T Consensus 80 ~~~~l~~l~~~g~~~~i~S~~~--~~~~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~g~~ 157 (217)
T 3m1y_A 80 ALELVSALKEKNYKVVCFSGGF--DLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGEMLLVLQRLLNIS 157 (217)
T ss_dssp HHHHHHHHHTTTEEEEEEEEEE--HHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEEESCCSTTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCEEEEEcCCc--hhHHHHHHHHcCcchhccceeEEeCCEEEeeeccCCCCCCChHHHHHHHHHHcCCC
Confidence 4455666665554444444443 333444444455443 22 3456788999999999999999998
Q ss_pred CCceEEE
Q 012354 258 PETVLHY 264 (465)
Q Consensus 258 ~~~I~~~ 264 (465)
++++..+
T Consensus 158 ~~~~i~v 164 (217)
T 3m1y_A 158 KTNTLVV 164 (217)
T ss_dssp STTEEEE
T ss_pred HhHEEEE
Confidence 8876544
No 78
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=46.29 E-value=2.8 Score=43.61 Aligned_cols=29 Identities=0% Similarity=-0.227 Sum_probs=18.2
Q ss_pred CCcccccccccccccceecCC----------Ccccccccccc
Q 012354 68 CGLCDTYYIAHVKDACAFLGD----------GMSRIEGLETV 99 (465)
Q Consensus 68 CGaC~siCp~~~~~ai~f~~e----------G~~~c~~vCp~ 99 (465)
|+.|.+.||. .||.++.. .|..|.++||.
T Consensus 277 ~~~vv~~CPt---~ai~~~~~~l~Id~~~C~~Cg~Ci~~CP~ 315 (437)
T 3or1_A 277 EAEVVGLCPT---GCMTYESGTLSIDNKNCTRCMHCINTMPR 315 (437)
T ss_dssp HHHTTTTCTT---CCEEEETTEEEECGGGCCCCSHHHHHCTT
T ss_pred chhhhccCcH---HheeecCCEEEEccccCCchhhhHhhCcH
Confidence 3567778885 45655421 26677788875
No 79
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=45.98 E-value=3.4 Score=42.12 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=8.9
Q ss_pred CCCCCCccCCccccccc
Q 012354 60 PAKDHCSRCGLCDTYYI 76 (465)
Q Consensus 60 ~~k~lCtGCGaC~siCp 76 (465)
++.+.|.+||.|..+||
T Consensus 253 id~~~Ci~Cg~C~~~CP 269 (386)
T 3or1_B 253 INNDRCMYCGNCYTMCP 269 (386)
T ss_dssp ECTTTCCCCCHHHHHCT
T ss_pred cCCCcCCccccHHHhCc
Confidence 34445555555555555
No 80
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=42.43 E-value=1.6e+02 Score=25.25 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=45.3
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
....++.+.+.|.+-+++++.+ ...++.+.+.++. +.++..+..-.+.|.+..++..++.++++++++..+
T Consensus 101 ~~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 175 (230)
T 3um9_A 101 VPQALQQLRAAGLKTAILSNGS--RHSIRQVVGNSGLTNSFDHLISVDEVRLFKPHQKVYELAMDTLHLGESEILFV 175 (230)
T ss_dssp HHHHHHHHHHTTCEEEEEESSC--HHHHHHHHHHHTCGGGCSEEEEGGGTTCCTTCHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHhCCCeEEEEeCCC--HHHHHHHHHHCCChhhcceeEehhhcccCCCChHHHHHHHHHhCCCcccEEEE
Confidence 4455666666654434444444 3344444444443 445566666678899999999999999988887555
No 81
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=41.18 E-value=6.5 Score=41.86 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=21.5
Q ss_pred ccCCccccccccccccc----------ceecCCC---cccccccccccc
Q 012354 66 SRCGLCDTYYIAHVKDA----------CAFLGDG---MSRIEGLETVVH 101 (465)
Q Consensus 66 tGCGaC~siCp~~~~~a----------i~f~~eG---~~~c~~vCp~~~ 101 (465)
+.||.|..+||..+... +.++.++ |+.|...||...
T Consensus 519 ~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~~~~Ci~C~~C~~~cp~~~ 567 (584)
T 2gmh_A 519 IYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKTCDIKDPSQN 567 (584)
T ss_dssp HHCCTHHHHCTTCCEEEEECSSTTCEEEEECGGGCCCCCHHHHHCTTCC
T ss_pred hhcchhhhcCChhhEEEeecCCCCceEEEEeCCCCcCCCCchhhCCCCC
Confidence 66788888888654321 2233343 566777887543
No 82
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=38.26 E-value=8 Score=37.81 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.7
Q ss_pred CCCCccCCccccccccc
Q 012354 62 KDHCSRCGLCDTYYIAH 78 (465)
Q Consensus 62 k~lCtGCGaC~siCp~~ 78 (465)
-..|+.||.|..+||++
T Consensus 236 l~~C~~Cg~C~~vCP~g 252 (282)
T 3vr8_B 236 AFKCHTIMNCTKTCPKH 252 (282)
T ss_pred cccChhhCCccccCcCC
Confidence 35799999999999974
No 83
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=36.70 E-value=1.9e+02 Score=24.29 Aligned_cols=73 Identities=7% Similarity=0.073 Sum_probs=47.0
Q ss_pred chHHHHHHHHcCCCEEEEEecCh---------HH----HHHHHHHHhcC--CCceEEE-----cccCCCCCCHHHHHHHH
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGC---------QV----QALRSVEHHLN--LEKLYVL-----GTNCVDNGTREGLDKFL 251 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPC---------QI----~aLr~l~~~l~--~e~L~~I-----gl~C~Gv~S~~~~~~~L 251 (465)
+...++++++.|.+-+++++.|- ++ ..++.+.+.++ .+.++.. +-.=.+-|.+..++..+
T Consensus 32 ~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~ 111 (179)
T 3l8h_A 32 SLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDGCACRKPLPGMYRDIA 111 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTCCCCEEEEECCCTTSCCSSSTTSSHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCCceeEEEEcCCCCCCCCCCCCCCHHHHHHHH
Confidence 45667777777766567777764 11 33444444566 5555532 11123578999999999
Q ss_pred HHhCCCCCceEEE
Q 012354 252 KAASSEPETVLHY 264 (465)
Q Consensus 252 ~~~~~~~~~I~~~ 264 (465)
+.++.+++++..+
T Consensus 112 ~~~~~~~~~~~~v 124 (179)
T 3l8h_A 112 RRYDVDLAGVPAV 124 (179)
T ss_dssp HHHTCCCTTCEEE
T ss_pred HHcCCCHHHEEEE
Confidence 9999988887655
No 84
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=34.89 E-value=1.9e+02 Score=25.37 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=45.1
Q ss_pred CchHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 191 PNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 191 ~~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
.....++.+.+.|.+-+++++.+- ..++.+.+.++. +.++..+..-.+.|.+..+...++.++++++++..+
T Consensus 109 ~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i 184 (240)
T 2no4_A 109 DAAETLEKLKSAGYIVAILSNGND--EMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCFV 184 (240)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHHHTCCGGGEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHHhcCcHHHcCEEEEccccCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 344556666666543334444443 334444444553 345555555567899999999999999988877655
No 85
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=34.00 E-value=10 Score=36.97 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.8
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
..|..||.|.++||..
T Consensus 180 ~~CI~CG~C~~aCP~~ 195 (282)
T 3vr8_B 180 YECILCACCSASCPSY 195 (282)
T ss_pred hhCcccCcCcccCCce
Confidence 3599999999999953
No 86
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=33.12 E-value=7.8 Score=37.28 Aligned_cols=30 Identities=3% Similarity=-0.112 Sum_probs=21.2
Q ss_pred ccCCcccccccccccccceecC-----------CCccccccccc
Q 012354 66 SRCGLCDTYYIAHVKDACAFLG-----------DGMSRIEGLET 98 (465)
Q Consensus 66 tGCGaC~siCp~~~~~ai~f~~-----------eG~~~c~~vCp 98 (465)
.+||.|...||.. ++.++. .+|..|..+||
T Consensus 174 ~~C~~C~~~CP~g---~I~id~~~~v~~d~~~C~~C~~C~~vCp 214 (265)
T 2pa8_D 174 ANCEKAVNVCPEG---VFELKDGKLSVKNELSCTLCEECLRYCN 214 (265)
T ss_dssp SCCTTHHHHCTTC---CEEEETTEEEESCGGGCCCCCHHHHHHT
T ss_pred hhHHHHHHhCccc---CeEecCCeeEEeccccCCCchHHHHhCC
Confidence 7899999999963 443321 24677888887
No 87
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=32.23 E-value=7.6 Score=41.34 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCCCCCCccCCcccccccccccccceecC
Q 012354 59 YPAKDHCSRCGLCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 59 ~~~k~lCtGCGaC~siCp~~~~~ai~f~~ 87 (465)
.+..+.|..||+|...||. ++|.+..
T Consensus 547 ~i~~~~Ci~C~~C~~~cp~---~~i~~~~ 572 (584)
T 2gmh_A 547 QINAQNCVHCKTCDIKDPS---QNINWVV 572 (584)
T ss_dssp EECGGGCCCCCHHHHHCTT---CCEEECC
T ss_pred EEeCCCCcCCCCchhhCCC---CCceeEC
Confidence 4566789999999999996 5777753
No 88
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=31.49 E-value=2e+02 Score=25.28 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=46.1
Q ss_pred chHHHHHHHHcCCCEEEEEecChHH-------------HHHHHHHHhcCC--CceEEE------------cccCCCCCCH
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQV-------------QALRSVEHHLNL--EKLYVL------------GTNCVDNGTR 244 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI-------------~aLr~l~~~l~~--e~L~~I------------gl~C~Gv~S~ 244 (465)
+...|+++++.|.+-+++++.+-.. ..++.+.+.++. +..+.. +-.=.+-|.+
T Consensus 61 ~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~g~~~~~~~~~~~~KP~~ 140 (218)
T 2o2x_A 61 MLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNP 140 (218)
T ss_dssp GHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCCCSEEEEECCCTTCCSTTCCSSCTTSTTSC
T ss_pred HHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcCCceeeEEEeecCCCCceeecccCCccCCCCH
Confidence 4456677777776666677766521 455555555553 333332 1222467889
Q ss_pred HHHHHHHHHhCCCCCceEEE
Q 012354 245 EGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 245 ~~~~~~L~~~~~~~~~I~~~ 264 (465)
..++..++.++++++++..+
T Consensus 141 ~~~~~~~~~~~i~~~~~~~V 160 (218)
T 2o2x_A 141 GMLVEAGKRLALDLQRSLIV 160 (218)
T ss_dssp HHHHHHHHHHTCCGGGCEEE
T ss_pred HHHHHHHHHcCCCHHHEEEE
Confidence 99999999999988877654
No 89
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=31.40 E-value=1.2e+02 Score=25.32 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=40.5
Q ss_pred hHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 193 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 193 l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
...++++++.|.+-++++|.+- ..++.+.+.++.+..+ ..+.|.+..++..++.++.+++++..+
T Consensus 42 ~~~l~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~~-----~~~kp~~~~~~~~~~~~~~~~~~~~~v 106 (162)
T 2p9j_A 42 GIGIKLLQKMGITLAVISGRDS--APLITRLKELGVEEIY-----TGSYKKLEIYEKIKEKYSLKDEEIGFI 106 (162)
T ss_dssp HHHHHHHHTTTCEEEEEESCCC--HHHHHHHHHTTCCEEE-----ECC--CHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHCCCEEEEEeCCCc--HHHHHHHHHcCCHhhc-----cCCCCCHHHHHHHHHHcCCCHHHEEEE
Confidence 3566666666655455666653 3445555566665433 347899999999999998877765443
No 90
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=29.87 E-value=2.4e+02 Score=24.21 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=44.2
Q ss_pred chHHHHHHHHcCCCEEEEEecCh-HHHHHHHHHHhcCCCceE----EEccc----CCCCCCHHHHHHHHHHhCCCCCceE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGC-QVQALRSVEHHLNLEKLY----VLGTN----CVDNGTREGLDKFLKAASSEPETVL 262 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPC-QI~aLr~l~~~l~~e~L~----~Igl~----C~Gv~S~~~~~~~L~~~~~~~~~I~ 262 (465)
+...|+.+++.|.+-+++++.+- .-..++.+.+.++.+..+ +-+-. =.+-|++..++..++.++.+++++.
T Consensus 39 ~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l 118 (189)
T 3ib6_A 39 AKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAV 118 (189)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhheEEEEEccccccccCCCCcCHHHHHHHHHHcCCCcccEE
Confidence 34556667776644445555543 123444555556654332 22221 1346899999999999999888876
Q ss_pred EEE
Q 012354 263 HYE 265 (465)
Q Consensus 263 ~~~ 265 (465)
.+.
T Consensus 119 ~VG 121 (189)
T 3ib6_A 119 MVG 121 (189)
T ss_dssp EEE
T ss_pred EEC
Confidence 654
No 91
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=28.85 E-value=1.6e+02 Score=25.28 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=45.9
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
....++++.+.|.+-+++++.+ ...++.+.+.++. +.++..+..-.+.|.+..++..++.++++++++..|
T Consensus 96 ~~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~i~i 170 (233)
T 3s6j_A 96 AVELLETLDKENLKWCIATSGG--IDTATINLKALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVI 170 (233)
T ss_dssp HHHHHHHHHHTTCCEEEECSSC--HHHHHHHHHTTTCCTTSSCEECGGGSSCCTTSTHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHCCCeEEEEeCCc--hhhHHHHHHhcchhhhhheeeccccCCCCCCChHHHHHHHHHhCCCHHHEEEE
Confidence 3455666666665444444444 3334444444443 445566666668999999999999999988887554
No 92
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=28.76 E-value=13 Score=34.35 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=19.4
Q ss_pred CCCCCccC------C---cccccccccccccceecC
Q 012354 61 AKDHCSRC------G---LCDTYYIAHVKDACAFLG 87 (465)
Q Consensus 61 ~k~lCtGC------G---aC~siCp~~~~~ai~f~~ 87 (465)
..+.|++| | +|+.+||. .|+.|..
T Consensus 133 ~~~kC~~C~~~~~~G~~p~Cv~~CP~---~Ai~~~~ 165 (214)
T 1h0h_B 133 QMAKCDMCIDRITNGLRPACVTSCPT---GAMNFGD 165 (214)
T ss_dssp CEECCCTTHHHHTTTCCCHHHHHCSS---SCEEEEE
T ss_pred ccCcCCCCcchhhcCCChhHHHhcCc---ccEEEcc
Confidence 45789999 6 99999996 5887753
No 93
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=28.05 E-value=12 Score=35.98 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=14.1
Q ss_pred CCCCCccCCccccccc
Q 012354 61 AKDHCSRCGLCDTYYI 76 (465)
Q Consensus 61 ~k~lCtGCGaC~siCp 76 (465)
+...|++||.|..+||
T Consensus 199 d~~~C~~C~~C~~vCp 214 (265)
T 2pa8_D 199 NELSCTLCEECLRYCN 214 (265)
T ss_dssp CGGGCCCCCHHHHHHT
T ss_pred ccccCCCchHHHHhCC
Confidence 3468999999999998
No 94
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=27.26 E-value=2.1e+02 Score=24.48 Aligned_cols=70 Identities=6% Similarity=0.051 Sum_probs=45.9
Q ss_pred hHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 193 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 193 l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
...++.+.+.+.+-+++++.+- ..++.+.+.++. +.++..+..-.+.|.+..++..++.++++++++..|
T Consensus 92 ~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~i~i 165 (226)
T 3mc1_A 92 EALLSSLKDYGFHLVVATSKPT--VFSKQILEHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAMESLNIKSDDAIMI 165 (226)
T ss_dssp HHHHHHHHHHTCEEEEEEEEEH--HHHHHHHHHTTCGGGCSEEEEECTTSSSCSHHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHCCCeEEEEeCCCH--HHHHHHHHHhCCHhheeeeeccCCCCCCCCCHHHHHHHHHHhCcCcccEEEE
Confidence 4455666666644444555433 334444444443 456677777778999999999999999988876544
No 95
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=25.51 E-value=2.2e+02 Score=23.73 Aligned_cols=71 Identities=14% Similarity=-0.018 Sum_probs=44.3
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
....++++.+.|.+-+++++.+ -..++.+.+.++. +.++.-+-.=.+.|.+..++..++.++.+++++..+
T Consensus 94 ~~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~i 168 (214)
T 3e58_A 94 VLKVLNEVKSQGLEIGLASSSV--KADIFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRALII 168 (214)
T ss_dssp HHHHHHHHHHTTCEEEEEESSC--HHHHHHHHHHTTCGGGCSEEEEGGGCSSCTTSSHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHCCCCEEEEeCCc--HHHHHHHHHHcCcHhheeeEeecccccCCCCChHHHHHHHHHcCCChHHeEEE
Confidence 3455566666654444444443 3334444444553 334444444567889999999999999988887655
No 96
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=25.48 E-value=2.9e+02 Score=23.54 Aligned_cols=71 Identities=7% Similarity=0.117 Sum_probs=42.2
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
+...++.+++.|.+-++++|.+- -..++.+.+.++.+..+-.- ++.+.+.+..+...++.++++++++..+
T Consensus 73 ~~e~L~~L~~~G~~v~ivT~~~~-~~~~~~~l~~~gl~~~f~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~i 143 (187)
T 2wm8_A 73 VPEVLKRLQSLGVPGAAASRTSE-IEGANQLLELFDLFRYFVHR-EIYPGSKITHFERLQQKTGIPFSQMIFF 143 (187)
T ss_dssp HHHHHHHHHHHTCCEEEEECCSC-HHHHHHHHHHTTCTTTEEEE-EESSSCHHHHHHHHHHHHCCCGGGEEEE
T ss_pred HHHHHHHHHHCCceEEEEeCCCC-hHHHHHHHHHcCcHhhccee-EEEeCchHHHHHHHHHHcCCChHHEEEE
Confidence 44566667777766666777762 12233344456655443211 1223466788888899999888876554
No 97
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=23.69 E-value=2.9e+02 Score=24.03 Aligned_cols=70 Identities=9% Similarity=0.057 Sum_probs=45.9
Q ss_pred hHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCC-CCceEEE
Q 012354 193 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSE-PETVLHY 264 (465)
Q Consensus 193 l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~-~~~I~~~ 264 (465)
...++.+.+.|.+-+++++.+ ...++.+.+.++. +.++..+..-.+.|.+..++..++.++++ ++++..|
T Consensus 116 ~~~l~~l~~~g~~~~i~s~~~--~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~~i~v 190 (240)
T 3sd7_A 116 KEILEMLYKNGKILLVATSKP--TVFAETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDKVIMV 190 (240)
T ss_dssp HHHHHHHHHTTCEEEEEEEEE--HHHHHHHHHHTTCGGGCSEEEEECTTSCCCCHHHHHHHHHHHHTCCCGGGEEEE
T ss_pred HHHHHHHHHCCCeEEEEeCCc--HHHHHHHHHHcCcHhhEEEEEeccccCCCCCCHHHHHHHHHHcCCCCCCcEEEE
Confidence 345566666654444444443 3334444444443 45667777777889999999999999998 8887655
No 98
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=23.43 E-value=2.4e+02 Score=24.30 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=46.0
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
....++.+.+.|.+-+++++.+- ..++.+.+.++. +.++..+-.-.+-|.+..+...++.++++++++..+
T Consensus 104 ~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~v 178 (233)
T 3umb_A 104 NVPVLRQLREMGLPLGILSNGNP--QMLEIAVKSAGMSGLFDHVLSVDAVRLYKTAPAAYALAPRAFGVPAAQILFV 178 (233)
T ss_dssp HHHHHHHHHTTTCCEEEEESSCH--HHHHHHHHTTTCTTTCSEEEEGGGTTCCTTSHHHHTHHHHHHTSCGGGEEEE
T ss_pred HHHHHHHHHhCCCcEEEEeCCCH--HHHHHHHHHCCcHhhcCEEEEecccCCCCcCHHHHHHHHHHhCCCcccEEEE
Confidence 34455556656555455555543 334444444443 445666666678899999999999999988887655
No 99
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=23.32 E-value=2.6e+02 Score=23.91 Aligned_cols=70 Identities=13% Similarity=-0.007 Sum_probs=43.3
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
+...++.+. .+.+.+++++.+ -..++.+.+.++. +.++..+..-.+.|.+..++..++.++++++++..|
T Consensus 112 ~~~~l~~l~-~g~~~~i~sn~~--~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~~i 185 (240)
T 3qnm_A 112 AKEVLEYLA-PQYNLYILSNGF--RELQSRKMRSAGVDRYFKKIILSEDLGVLKPRPEIFHFALSATQSELRESLMI 185 (240)
T ss_dssp HHHHHHHHT-TTSEEEEEECSC--HHHHHHHHHHHTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHH-cCCeEEEEeCCc--hHHHHHHHHHcChHhhceeEEEeccCCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 344555555 553333444433 2333444333443 455666666678999999999999999988887655
No 100
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=22.71 E-value=3.7e+02 Score=23.10 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=43.4
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
....++.+.+.|.+-+++++.+- ..++.+.+.++. +.++..+..=.+.|.+..+...++.++.+++++..+
T Consensus 100 ~~~~l~~l~~~g~~~~i~t~~~~--~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i 174 (232)
T 1zrn_A 100 VPDSLRELKRRGLKLAILSNGSP--QSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILFV 174 (232)
T ss_dssp HHHHHHHHHHTTCEEEEEESSCH--HHHHHHHHHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHHHTSCGGGEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeCCCH--HHHHHHHHhcChHhhhheEEEecccCCCCCCHHHHHHHHHHcCCCcccEEEE
Confidence 34455666666544444445443 334444444553 334444444457899999999999999888876554
No 101
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=22.39 E-value=3.7e+02 Score=23.04 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=45.1
Q ss_pred hHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCC-ceEEE
Q 012354 193 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPE-TVLHY 264 (465)
Q Consensus 193 l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~-~I~~~ 264 (465)
...++.+.+.|.+-+++++.+- ..++.+.+.++. +.++..+-.-.+.|.+..++..++.++++++ ++..|
T Consensus 109 ~~~l~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~~v~v 183 (231)
T 3kzx_A 109 IELLDTLKENNITMAIVSNKNG--ERLRSEIHHKNLTHYFDSIIGSGDTGTIKPSPEPVLAALTNINIEPSKEVFFI 183 (231)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHTTCGGGCSEEEEETSSSCCTTSSHHHHHHHHHHTCCCSTTEEEE
T ss_pred HHHHHHHHHCCCeEEEEECCCH--HHHHHHHHHCCchhheeeEEcccccCCCCCChHHHHHHHHHcCCCcccCEEEE
Confidence 4455666666544444444443 334444444553 4556666666788999999999999999887 76544
No 102
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=22.22 E-value=19 Score=40.17 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=14.2
Q ss_pred CCCccCCccccccccc
Q 012354 63 DHCSRCGLCDTYYIAH 78 (465)
Q Consensus 63 ~lCtGCGaC~siCp~~ 78 (465)
+.|++||.|..+||..
T Consensus 453 ~~Ci~Cg~C~~vCP~g 468 (807)
T 3cf4_A 453 DTCIGCRRCEQVCKKE 468 (807)
T ss_dssp HHCCCCCHHHHHCTTC
T ss_pred hhccchhhHHHhCCCC
Confidence 5799999999999963
No 103
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=21.36 E-value=2.3e+02 Score=24.20 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCCCceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEE
Q 012354 194 NTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 263 (465)
Q Consensus 194 ~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~ 263 (465)
..++++.+.|.+-++++|.+-. .++.+.+.++.+..+ ..+.+.+..++..++.++.+++++..
T Consensus 42 ~~l~~L~~~G~~~~i~Tg~~~~--~~~~~~~~lgl~~~~-----~~~k~k~~~~~~~~~~~~~~~~~~~~ 104 (180)
T 1k1e_A 42 LGIKMLMDADIQVAVLSGRDSP--ILRRRIADLGIKLFF-----LGKLEKETACFDLMKQAGVTAEQTAY 104 (180)
T ss_dssp HHHHHHHHTTCEEEEEESCCCH--HHHHHHHHHTCCEEE-----ESCSCHHHHHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHHCCCeEEEEeCCCcH--HHHHHHHHcCCceee-----cCCCCcHHHHHHHHHHcCCCHHHEEE
Confidence 4667777777666677777654 344444556665433 45678889999999999887776543
No 104
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=21.22 E-value=2e+02 Score=24.32 Aligned_cols=67 Identities=12% Similarity=-0.016 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCEEEE-EecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 194 NTLALVEAAGVKRLLF-CGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 194 ~~l~ei~~~~~kkVaf-vGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
..++.+.+.+ ++++ ++.+-.. ++.+.+.++. +.+++.+-.-.+-|++..+...++.++.+++++..+
T Consensus 93 ~~l~~l~~~g--~~~i~s~~~~~~--~~~~l~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~v 164 (200)
T 3cnh_A 93 ALARDLGQRY--RMYSLNNEGRDL--NEYRIRTFGLGEFLLAFFTSSALGVMKPNPAMYRLGLTLAQVRPEEAVMV 164 (200)
T ss_dssp HHHHHHTTTS--EEEEEECCCHHH--HHHHHHHHTGGGTCSCEEEHHHHSCCTTCHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHcC--CEEEEeCCcHHH--HHHHHHhCCHHHhcceEEeecccCCCCCCHHHHHHHHHHcCCCHHHeEEe
Confidence 3344444443 5544 4554432 3333333342 445555555668899999999999999988877655
No 105
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=20.96 E-value=1.5e+02 Score=28.56 Aligned_cols=72 Identities=13% Similarity=0.124 Sum_probs=44.5
Q ss_pred CchHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCCCceEE--------------EcccCCCCCCHHHHHHHHHHhCC
Q 012354 191 PNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYV--------------LGTNCVDNGTREGLDKFLKAASS 256 (465)
Q Consensus 191 ~~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~e~L~~--------------Igl~C~Gv~S~~~~~~~L~~~~~ 256 (465)
.....++.+++.|.+-+++++.+- ..++.+.+.++.+..+- .+-.+.+.|.+..+...++.+++
T Consensus 183 g~~e~L~~Lk~~G~~v~IvSn~~~--~~~~~~l~~lgl~~~f~~~l~~~dg~~tg~i~~~~~~~kpkp~~~~~~~~~lgv 260 (317)
T 4eze_A 183 GLLTILPVIKAKGFKTAIISGGLD--IFTQRLKARYQLDYAFSNTVEIRDNVLTDNITLPIMNAANKKQTLVDLAARLNI 260 (317)
T ss_dssp THHHHHHHHHHTTCEEEEEEEEEH--HHHHHHHHHHTCSEEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhCCCEEEEEeCccH--HHHHHHHHHcCCCeEEEEEEEeeCCeeeeeEecccCCCCCCHHHHHHHHHHcCC
Confidence 344556666777655556666553 44445555566554332 22344556788889999999998
Q ss_pred CCCceEEE
Q 012354 257 EPETVLHY 264 (465)
Q Consensus 257 ~~~~I~~~ 264 (465)
+++++..+
T Consensus 261 ~~~~~i~V 268 (317)
T 4eze_A 261 ATENIIAC 268 (317)
T ss_dssp CGGGEEEE
T ss_pred CcceEEEE
Confidence 88876544
No 106
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=20.21 E-value=2.8e+02 Score=23.14 Aligned_cols=71 Identities=15% Similarity=0.091 Sum_probs=44.5
Q ss_pred chHHHHHHHHcCCCEEEEEecChHHHHHHHHHHhcCC----CceEEEcccCCCCCCHHHHHHHHHHhCCCCCceEEE
Q 012354 192 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 264 (465)
Q Consensus 192 ~l~~l~ei~~~~~kkVafvGtPCQI~aLr~l~~~l~~----e~L~~Igl~C~Gv~S~~~~~~~L~~~~~~~~~I~~~ 264 (465)
....++++.+.|.+-+++++. ....++.+.+.++. +.++..+-.-.+.|.+..++..++.++++++++..+
T Consensus 89 ~~~~l~~l~~~g~~~~i~s~~--~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~i 163 (216)
T 2pib_A 89 VREALEFVKSKRIKLALATST--PQREALERLRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVF 163 (216)
T ss_dssp HHHHHHHHHHTTCEEEEECSS--CHHHHHHHHHHTTCGGGCSEEECGGGSSSCTTSTHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHCCCCEEEEeCC--cHHhHHHHHHhcChHHhcCEEeecccCCCCCcCcHHHHHHHHHcCCCCceEEEE
Confidence 345566666665433333343 33444454445554 334555555668899999999999999988887554
Done!