Query 012355
Match_columns 465
No_of_seqs 249 out of 574
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:49:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dad_A FH1/FH2 domain-containi 23.5 2.1E+02 0.0071 28.8 8.0 138 142-285 123-289 (339)
2 4gof_A Small glutamine-rich te 18.9 52 0.0018 24.4 1.8 27 175-201 8-43 (52)
3 3grl_A General vesicular trans 18.5 4.5E+02 0.015 28.7 9.8 138 137-285 60-244 (651)
4 2pmi_B PHO85 cyclin PHO80, ami 15.2 1.3E+02 0.0044 29.8 4.2 43 244-287 70-112 (293)
5 3odn_A Dally-like protein; alp 13.5 5.8E+02 0.02 27.0 8.8 53 134-192 80-136 (506)
6 3si5_X Protein CASC5; BUBR1-bl 12.7 67 0.0023 20.1 0.8 7 253-259 15-21 (24)
7 1eg3_A Dystrophin; EF-hand lik 12.2 8.3E+02 0.028 23.3 9.0 53 167-221 120-178 (261)
8 4asv_A Small glutamine-rich te 12.2 1.1E+02 0.0036 25.4 2.1 27 175-201 25-60 (92)
9 2lxb_A Small glutamine-rich te 11.4 1.2E+02 0.004 24.1 2.1 27 175-201 13-48 (74)
10 1zoq_C CREB-binding protein, i 11.3 3E+02 0.01 19.9 4.0 33 142-181 6-38 (47)
No 1
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=23.53 E-value=2.1e+02 Score=28.82 Aligned_cols=138 Identities=17% Similarity=0.121 Sum_probs=72.7
Q ss_pred HHHhccCCCChhhHHHHHHHhhhhhhcccCChhhHhhHHHH-----hhcc----CcchHHHHHHHHHHHHHh---h-CC-
Q 012355 142 WITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTR-----SYDI----GGVVSVMALSSLFILMTQ---H-GL- 207 (465)
Q Consensus 142 wL~~Lk~al~~~l~k~vL~~L~k~i~pHl~Np~ll~DFL~d-----~~d~----gg~~SllAL~~LF~Li~~---~-Nl- 207 (465)
|+..|. .-..+-++.+|-.|.+ +|- .++.|...|+.. +.++ .|.+--.+|..+-+||.. . ++
T Consensus 123 iiekL~-~~~~~~lr~aLfsLk~-~~q--~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 123 ILEKLY-SSSGPELRRSLFSLKQ-IFQ--EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHH-HCCHHHHHHHHHHHHH-HHH--TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHh-cCCcHHHHHHHHHHHH-Hhh--cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 334443 2345566777777765 121 465555556532 1221 133444566666666642 1 22
Q ss_pred CchhHHHHHHHhhCccccccccHHHHHHHHHHHhcCCCChHHHHHHHHH------------HHHHHhc---cCChhHHHH
Q 012355 208 EYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAFVK------------KLSRLSI---LVPPSGALV 272 (465)
Q Consensus 208 d~~rFY~~LY~LLdp~l~~s~~ra~fL~LL~~~Lks~~lp~~RVAAFiK------------RLlqlaL---~~pP~~~~~ 272 (465)
..+.|-++||++++...-...++ -|.||..+...+.-....|..=++ +|..+-- ...+...+-
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~--AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKT--ALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHH--HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHH--HHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 27899999999988421111122 366676665443223333333333 3333332 356666677
Q ss_pred HHHHHHHHHHhCc
Q 012355 273 IMALIHNLLRRHP 285 (465)
Q Consensus 273 iL~lI~nLLkrhP 285 (465)
++.+|-.+|..-|
T Consensus 277 amtLIN~lL~~ap 289 (339)
T 3dad_A 277 TVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHhcCC
Confidence 7888888777654
No 2
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=18.87 E-value=52 Score=24.44 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=20.3
Q ss_pred hHhhHHHHhhccCc---------chHHHHHHHHHHH
Q 012355 175 MLCDFLTRSYDIGG---------VVSVMALSSLFIL 201 (465)
Q Consensus 175 ll~DFL~d~~d~gg---------~~SllAL~~LF~L 201 (465)
.+.|||....+.|. -++++||...|.+
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 35779988887663 2789999988865
No 3
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=18.50 E-value=4.5e+02 Score=28.72 Aligned_cols=138 Identities=20% Similarity=0.120 Sum_probs=77.3
Q ss_pred HHHHHHHHhccCC-CChhhHHHHHHHhhhhhhcccCCh----------hhHhhHHHHhhccCcchHHHHHHHHHHHHHhh
Q 012355 137 KFTKAWITFLRLP-LPVDIYKEVLVTLHRAVIPFLSNP----------IMLCDFLTRSYDIGGVVSVMALSSLFILMTQH 205 (465)
Q Consensus 137 ~~~~awL~~Lk~a-l~~~l~k~vL~~L~k~i~pHl~Np----------~ll~DFL~d~~d~gg~~SllAL~~LF~Li~~~ 205 (465)
.-...++..|++. -+.++.+.+|++|.- ++.--.++ .-++.++++.+=.. --.+.+|+.++
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~-l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~----~~~i~~Ll~lL--- 131 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYN-IISNDEEEEVEENSTRQSEDLGSQFTEIFIKQ----QENVTLLLSLL--- 131 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHH-HHCCC--------------CHHHHHHHHHHHS----THHHHHHHHHT---
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHH-HhCCCCcccccccccccchHHHHHHHHHHHcC----CccHHHHHHHh---
Confidence 3445777888765 678999999999975 23211111 12334444433110 01233344443
Q ss_pred CCCchhHHHHHHH--hhCc------c-----cc-------------ccc---cHHHHHHHHHHHhcCCCChHHHHHHH--
Q 012355 206 GLEYPNFYEKLYA--LLVP------S-----IF-------------MAK---HRAKFFELLDSCLRSPLLPAYLAAAF-- 254 (465)
Q Consensus 206 Nld~~rFY~~LY~--LLdp------~-----l~-------------~s~---~ra~fL~LL~~~Lks~~lp~~RVAAF-- 254 (465)
+.++||.++|+ +|.- . ++ ..+ -|..-+.|| ..|..++-..+-+.||
T Consensus 132 --~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL-~~Lt~~n~~iQklVAFEn 208 (651)
T 3grl_A 132 --EEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL-QALTRSNGAIQKIVAFEN 208 (651)
T ss_dssp --TCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH-HHHHTTCHHHHHHHHHTT
T ss_pred --cCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH-HHHhcCCHHHHHHHHHhc
Confidence 56889999998 3321 1 11 101 012222222 3455555578899999
Q ss_pred -HHHHHHHhccCCh--h--HHHHHHHHHHHHHHhCc
Q 012355 255 -VKKLSRLSILVPP--S--GALVIMALIHNLLRRHP 285 (465)
Q Consensus 255 -iKRLlqlaL~~pP--~--~~~~iL~lI~nLLkrhP 285 (465)
.-||..+--.-.. + .+--+|.++.+|++-+|
T Consensus 209 aFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 209 AFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 8999988765433 2 23368999999998764
No 4
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=15.19 E-value=1.3e+02 Score=29.77 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhCccc
Q 012355 244 PLLPAYLAAAFVKKLSRLSILVPPSGALVIMALIHNLLRRHPSI 287 (465)
Q Consensus 244 ~~lp~~RVAAFiKRLlqlaL~~pP~~~~~iL~lI~nLLkrhP~l 287 (465)
...|.--+..|+.||.+-|- +++...+.+|..|..|..++|.+
T Consensus 70 ~~~P~ISI~~Yl~RI~k~t~-ls~~~ll~ALvYLdRL~~~~p~~ 112 (293)
T 2pmi_B 70 KIPPNISIFNYFIRLTKFSS-LEHCVLMTSLYYIDLLQTVYPDF 112 (293)
T ss_dssp SSCCSSCHHHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhhCCCC
Confidence 33566678899999999876 45677777778888898888854
No 5
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=13.51 E-value=5.8e+02 Score=27.04 Aligned_cols=53 Identities=13% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhhccc--CChhhHhhHHHHhhc--cCcchHH
Q 012355 134 MKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFL--SNPIMLCDFLTRSYD--IGGVVSV 192 (465)
Q Consensus 134 ~k~~~~~awL~~Lk~al~~~l~k~vL~~L~k~i~pHl--~Np~ll~DFL~d~~d--~gg~~Sl 192 (465)
.-++|++.+...|+. -+..|..|+.+.+..| .|-.++.||++++.. .|+.+.|
T Consensus 80 ~~~~F~e~F~~LL~~------Se~~l~~mF~~tYg~ly~qn~~~f~~LF~~L~~Yy~g~~v~L 136 (506)
T 3odn_A 80 KATKFKDIFTALLKE------SRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDL 136 (506)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHTTHHHHHTHHHHHHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 345677777777752 3344555555445444 466778888877543 4555444
No 6
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=12.70 E-value=67 Score=20.11 Aligned_cols=7 Identities=43% Similarity=0.942 Sum_probs=4.9
Q ss_pred HHHHHHH
Q 012355 253 AFVKKLS 259 (465)
Q Consensus 253 AFiKRLl 259 (465)
-|||||-
T Consensus 15 dFIKRLK 21 (24)
T 3si5_X 15 DFIKRLK 21 (26)
T ss_pred HHHHHHh
Confidence 5888873
No 7
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=12.22 E-value=8.3e+02 Score=23.28 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=31.7
Q ss_pred hcccCC----hhhHhhHHHHhhccC--cchHHHHHHHHHHHHHhhCCCchhHHHHHHHhhC
Q 012355 167 IPFLSN----PIMLCDFLTRSYDIG--GVVSVMALSSLFILMTQHGLEYPNFYEKLYALLV 221 (465)
Q Consensus 167 ~pHl~N----p~ll~DFL~d~~d~g--g~~SllAL~~LF~Li~~~Nld~~rFY~~LY~LLd 221 (465)
.|++.| +.++++|+...||.+ |.+.++.+...+.++.+-. ..+=|+-+|+|.|
T Consensus 120 ~p~~v~~~~~~~~~a~~lf~~FD~~~~G~I~f~ef~~aLs~l~rG~--leeKL~w~F~lyD 178 (261)
T 1eg3_A 120 HNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAH--LEDKYRYLFKQVA 178 (261)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHTSSSC--HHHHHHHHHHHHS
T ss_pred CcCcCCchhhHHHHHHHHHHHccCCCCceEeHHHHHHHHHHHcCCC--HHHHHHHHHheee
Confidence 344555 457788888899875 5777777766666654322 2223444444444
No 8
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=12.18 E-value=1.1e+02 Score=25.41 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=19.5
Q ss_pred hHhhHHHHhhccCc---------chHHHHHHHHHHH
Q 012355 175 MLCDFLTRSYDIGG---------VVSVMALSSLFIL 201 (465)
Q Consensus 175 ll~DFL~d~~d~gg---------~~SllAL~~LF~L 201 (465)
.+.|||..+...|. -++++||...|.+
T Consensus 25 sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~V 60 (92)
T 4asv_A 25 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 60 (92)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 34678888877653 2788999888865
No 9
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=11.40 E-value=1.2e+02 Score=24.09 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=19.8
Q ss_pred hHhhHHHHhhccCc---------chHHHHHHHHHHH
Q 012355 175 MLCDFLTRSYDIGG---------VVSVMALSSLFIL 201 (465)
Q Consensus 175 ll~DFL~d~~d~gg---------~~SllAL~~LF~L 201 (465)
.+.|||......|. -++++||...|.+
T Consensus 13 sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v 48 (74)
T 2lxb_A 13 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 48 (74)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 35678888877653 2788999888865
No 10
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=11.33 E-value=3e+02 Score=19.90 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=26.8
Q ss_pred HHHhccCCCChhhHHHHHHHhhhhhhcccCChhhHhhHHH
Q 012355 142 WITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 181 (465)
Q Consensus 142 wL~~Lk~al~~~l~k~vL~~L~k~i~pHl~Np~ll~DFL~ 181 (465)
.+.-||.+-+...-..||..|-. ||.+++-|+.
T Consensus 6 Ll~tlksp~sp~qqqqvl~ILks-------nPqLMAAfIk 38 (47)
T 1zoq_C 6 LLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 46678888888888888888875 9999998874
Done!