Query 012355
Match_columns 465
No_of_seqs 249 out of 574
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 07:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012355.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012355hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wiga1 g.39.1.3 (A:1-32) Acti 27.4 4.3 0.00031 25.5 -0.7 8 353-360 24-31 (32)
2 d1zoqc1 a.153.1.1 (C:2065-2111 20.7 58 0.0042 21.7 4.0 34 141-181 5-38 (47)
3 d1eg3a1 a.39.1.7 (A:85-209) Dy 19.6 51 0.0037 26.6 4.3 36 167-202 81-122 (125)
4 d1eo0a_ a.48.3.1 (A:) Transcri 10.6 46 0.0034 24.6 1.4 22 349-370 50-71 (77)
5 d2jm6b1 f.1.4.1 (B:147-308) EA 9.1 4.3E+02 0.031 20.9 9.8 90 193-284 43-136 (162)
6 d2jaka1 a.118.1.20 (A:30-372) 8.6 2.8E+02 0.021 25.3 6.7 24 147-170 55-78 (343)
7 d1w53a_ a.186.1.2 (A:) Phospho 8.0 2.7E+02 0.02 20.6 5.0 72 134-207 7-82 (84)
8 d1ui5a2 a.121.1.1 (A:80-212) A 7.6 82 0.006 25.0 1.9 60 169-239 67-128 (133)
9 d1dv5a_ a.28.1.3 (A:) apo-D-al 5.7 1.3E+02 0.0098 21.1 2.1 29 182-210 29-57 (80)
10 d1u5ka2 g.45.1.2 (A:81-237) Re 5.6 2.2E+02 0.016 22.4 3.7 20 247-266 49-68 (157)
No 1
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.44 E-value=4.3 Score=25.46 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=5.8
Q ss_pred hhccChHH
Q 012355 353 RHHYCPPV 360 (465)
Q Consensus 353 ~~HyHPsV 360 (465)
.+||||+.
T Consensus 24 ~khYHP~C 31 (32)
T d1wiga1 24 EKHYHPSC 31 (32)
T ss_dssp SCCBCTTT
T ss_pred ccccCCCC
Confidence 37888864
No 2
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.74 E-value=58 Score=21.66 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=28.0
Q ss_pred HHHHhccCCCChhhHHHHHHHhhhhhhcccCChhhHhhHHH
Q 012355 141 AWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLT 181 (465)
Q Consensus 141 awL~~Lk~al~~~l~k~vL~~L~k~i~pHl~Np~ll~DFL~ 181 (465)
-.++.||.+-++..-..||..|-. ||.+++-|+.
T Consensus 5 ~Ll~tLrsP~sP~QQqQvL~ILks-------NP~lmaaFIk 38 (47)
T d1zoqc1 5 DLLRTLKSPSSPQQQQQVLNILKS-------NPQLMAAFIK 38 (47)
T ss_dssp HHHHTCCSCCCHHHHHHHHHHHHT-------CHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHc-------CHHHHHHHHH
Confidence 356788888888888899988875 9999999874
No 3
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.59 E-value=51 Score=26.60 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=25.9
Q ss_pred hcccCC----hhhHhhHHHHhhccC--cchHHHHHHHHHHHH
Q 012355 167 IPFLSN----PIMLCDFLTRSYDIG--GVVSVMALSSLFILM 202 (465)
Q Consensus 167 ~pHl~N----p~ll~DFL~d~~d~g--g~~SllAL~~LF~Li 202 (465)
.|+..| .+++..||...||.| |.++++++...+.++
T Consensus 81 ~~~~v~vp~~~dl~LN~LlnvYD~~rtG~i~vls~KvaL~~L 122 (125)
T d1eg3a1 81 HNNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKTGIISL 122 (125)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHT
T ss_pred CcccCChHHHHHHHHHHHHHHhCCCCCCeeeehHHHHHHHHH
Confidence 566666 345556999999986 578888887666554
No 4
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.56 E-value=46 Score=24.57 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=18.5
Q ss_pred HHHHhhccChHHHHHHHHhhcc
Q 012355 349 IDTLRHHYCPPVSRFVLSLEND 370 (465)
Q Consensus 349 L~~L~~HyHPsVa~~A~~L~~g 370 (465)
+..|+.|-+|.|+.+|+.|..+
T Consensus 50 Vn~LRkh~~~~v~~lAk~Lv~~ 71 (77)
T d1eo0a_ 50 VNKFKKSTNVEISKLVKKMISS 71 (77)
T ss_dssp HHHCCSSSCTTHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHH
Confidence 5678899999999999998753
No 5
>d2jm6b1 f.1.4.1 (B:147-308) EAT/MCL-1 (Myeloid cell leukemia sequence 1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.07 E-value=4.3e+02 Score=20.94 Aligned_cols=90 Identities=11% Similarity=-0.022 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhCCCchhHHHHHHHhhCccccccccHHHHHHHHHHHhcCCCChHHHHHHH---HHHHHHHhccC-Chh
Q 012355 193 MALSSLFILMTQHGLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDSCLRSPLLPAYLAAAF---VKKLSRLSILV-PPS 268 (465)
Q Consensus 193 lAL~~LF~Li~~~Nld~~rFY~~LY~LLdp~l~~s~~ra~fL~LL~~~Lks~~lp~~RVAAF---iKRLlqlaL~~-pP~ 268 (465)
-+..+|-.+.....-.++.+|+.+.+-|+.. ...-...|.......++...++=.||.|+ .=+|+.-|... -+.
T Consensus 43 ~~~~~L~~~g~ele~~~~~~f~~~~~~l~i~--~~~~~~~f~~Va~elf~dG~~NWGRIval~~F~~~la~~~~~~~~~~ 120 (162)
T d2jm6b1 43 RALETLRRVGDGVQRNHETAFQGMLRKLDIK--NEGDVKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQES 120 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS--STTHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CccHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHcCChh
Confidence 3344555555555556677788877755421 11224557777777776654466777654 44665555432 456
Q ss_pred HHHHHHHHHHHHHHhC
Q 012355 269 GALVIMALIHNLLRRH 284 (465)
Q Consensus 269 ~~~~iL~lI~nLLkrh 284 (465)
.+-.++.++...|..+
T Consensus 121 ~v~~i~~~~~~fl~~~ 136 (162)
T d2jm6b1 121 FIEPLAETITDVLVRT 136 (162)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6667777887777654
No 6
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.62 E-value=2.8e+02 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=15.6
Q ss_pred cCCCChhhHHHHHHHhhhhhhccc
Q 012355 147 RLPLPVDIYKEVLVTLHRAVIPFL 170 (465)
Q Consensus 147 k~al~~~l~k~vL~~L~k~i~pHl 170 (465)
+..++.+++..+...+...||--+
T Consensus 55 ~~~l~e~~~~~i~~Mi~~NifR~l 78 (343)
T d2jaka1 55 RNVITEPIYPEVVHMFAVNMFRTL 78 (343)
T ss_dssp CSCCCTTHHHHHHHHHHHHHCSCC
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCC
Confidence 345777777777777776665433
No 7
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=8.00 E-value=2.7e+02 Score=20.57 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHhhhhhhcccCChhhHhhHHHHhhcc---C-cchHHHHHHHHHHHHHhhCC
Q 012355 134 MKSKFTKAWITFLRLPLPVDIYKEVLVTLHRAVIPFLSNPIMLCDFLTRSYDI---G-GVVSVMALSSLFILMTQHGL 207 (465)
Q Consensus 134 ~k~~~~~awL~~Lk~al~~~l~k~vL~~L~k~i~pHl~Np~ll~DFL~d~~d~---g-g~~SllAL~~LF~Li~~~Nl 207 (465)
++.++..+.-.+|...-...++ ....+.+.++-+=+.|+-+.+.-..+.+. + ..-...++..|.++|.++++
T Consensus 7 ~~~~Y~~iL~~Yl~~~~E~~Ly--~~~~fsre~iek~IsPEeIV~iHk~~l~el~~~~~e~v~~Sfd~LlEVm~gyG~ 82 (84)
T d1w53a_ 7 IEQRYHQLLSRYIAELTETSLY--QAQKFSRKTIEHQIPPEEIISIHRKVLKELYPSLPEDVFHSLDFLIEVMIGYGM 82 (84)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHcCc
Confidence 3344444444444322233444 77788888888999998888876665542 2 23457889999999888764
No 8
>d1ui5a2 a.121.1.1 (A:80-212) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=7.60 E-value=82 Score=25.00 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=36.2
Q ss_pred ccCChhhHhhHHHHhhccCcchHHHHHHHHHHHHHhh--CCCchhHHHHHHHhhCccccccccHHHHHHHHHH
Q 012355 169 FLSNPIMLCDFLTRSYDIGGVVSVMALSSLFILMTQH--GLEYPNFYEKLYALLVPSIFMAKHRAKFFELLDS 239 (465)
Q Consensus 169 Hl~Np~ll~DFL~d~~d~gg~~SllAL~~LF~Li~~~--Nld~~rFY~~LY~LLdp~l~~s~~ra~fL~LL~~ 239 (465)
--.||.-++-|+ +-++.|+-.+.... .-+.++....+++++-|.+...+.+++|..++.+
T Consensus 67 ~d~dp~~lA~~l-----------va~~~G~~~lsr~~~~~~~L~~rl~~~w~llLp~l~~~~~~~~~~~~~~r 128 (133)
T d1ui5a2 67 QDIDVDSVAHTL-----------VCSVVGTRVVGGTLEPAGREPRRLAEMWYILIRGMVPVTRRARYVTLAAR 128 (133)
T ss_dssp TTCCHHHHHHHH-----------HHHHHCTTCC--------CHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-----------HHHHHHHHHHHhccCccccHHHHHHHHHHHHhccccCCCchHHHHHHHHh
Confidence 334666666676 34444444444332 2467778888899888888888888877666543
No 9
>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]}
Probab=5.67 E-value=1.3e+02 Score=21.09 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=23.7
Q ss_pred HhhccCcchHHHHHHHHHHHHHhhCCCch
Q 012355 182 RSYDIGGVVSVMALSSLFILMTQHGLEYP 210 (465)
Q Consensus 182 d~~d~gg~~SllAL~~LF~Li~~~Nld~~ 210 (465)
+.++.||.-|+.++.++..|-..+++.-|
T Consensus 29 ~l~e~gglDSl~~vel~~~ie~~fgi~i~ 57 (80)
T d1dv5a_ 29 NLFETGLLDSMGTVQLLLELQSQFGVDAP 57 (80)
T ss_dssp CSSTTSSCCSHHHHHHHHHHTTTSCCCCC
T ss_pred cccccCCCCHHHHHHHHHHHHHHHCCCCC
Confidence 34577888999999999999888887654
No 10
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=5.64 E-value=2.2e+02 Score=22.35 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHhccCC
Q 012355 247 PAYLAAAFVKKLSRLSILVP 266 (465)
Q Consensus 247 p~~RVAAFiKRLlqlaL~~p 266 (465)
+.....+|.=||++.+=..|
T Consensus 49 ~~~~~~~f~l~ll~~~G~~P 68 (157)
T d1u5ka2 49 PEWVALVMSYKLLGLAGVIP 68 (157)
T ss_dssp HHHHHHHHHHHHHTTSSSCC
T ss_pred chHHHHHHHHHHHHHcCCCC
Confidence 44444455555555555444
Done!