BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012356
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 11 SAQVVGNAFVEQYYHILHQSPGLVHRFY-QDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
S VG FV QYY +L+++P +HRFY +SS + +G V + I++RI L
Sbjct: 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYI-----HGESKLVVGQREIHNRIQQL 56
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
N+ D A+I DAQ + GV+V VTG L+ ++FTQTF LA Q Y+V ND+
Sbjct: 57 NFNDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDI 116
Query: 130 FRF 132
FR+
Sbjct: 117 FRY 119
>pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
pdb|3Q90|B Chain B, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
Length = 140
Score = 86.3 bits (212), Expect = 3e-17, Method: Composition-based stats.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSS--LLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+Q+P ++HRFY +S + DSNG V K I+ ++
Sbjct: 7 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKV 66
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
+S N+ + +I+ DA + GV+V V G L+ + ++F QTF LAP+ ++
Sbjct: 67 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 126
Query: 125 VLNDVFRF 132
V ND+FR+
Sbjct: 127 VHNDIFRY 134
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P +G FV+ YY + + Y S+L+ D T I ++ SL
Sbjct: 9 PQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWED-----TQFQGQANIVNKFNSL 63
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
N++ EI D Q S G IV VTG + D KF+Q F L P GG+ + ND+
Sbjct: 64 NFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDL 123
Query: 130 FRF 132
FR
Sbjct: 124 FRL 126
>pdb|1GY7|A Chain A, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|B Chain B, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|C Chain C, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|D Chain D, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GYB|A Chain A, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|B Chain B, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|C Chain C, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|D Chain D, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
Length = 125
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 35 HRFYQDSSLLSRPDSNGSMTTVTT-----MKAINDRILSLNYEDYTAEIKTADAQDSYEK 89
++F D S L N SM T T K I ++++SL ++ I T DAQ +
Sbjct: 18 NQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPY 77
Query: 90 G-VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132
G V+V++TG L ++ ++F+Q F L P D Y+V ND+FR
Sbjct: 78 GDVLVMITGDLLIDEEQNPQRFSQVFHLIP-DGNSYYVFNDIFRL 121
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSV 356
E EGC++++ +L T T+L F FG + V + + CFGFV+F+ P S
Sbjct: 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSA 95
Query: 357 QSALEA-SPILIGDRPADVEAKR 378
Q A++A + +G + V+ K+
Sbjct: 96 QVAIKAMNGFQVGTKRLKVQLKK 118
>pdb|1ASK|A Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
pdb|1ASK|B Chain B, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
Length = 127
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ A I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQASITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|1GY5|A Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
pdb|1GY5|B Chain B, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
Length = 127
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L +N F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKANENPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|1QMA|A Chain A, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|B Chain B, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|C Chain C, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|D Chain D, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
Length = 126
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P A+ +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 4 PIAEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 58
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 59 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 117
Query: 130 FRF 132
FR
Sbjct: 118 FRL 120
>pdb|2I38|A Chain A, Solution Structure Of The Rrm Of Srp20
Length = 150
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360
C +YV NL TELE AF +GP++ V V N G F FV FE P A+
Sbjct: 74 CKVYVGNLGNNGNKTELERAFGYYGPLRS--VWVARNPPG--FAFVEFEDPRDAADAV 127
>pdb|2I2Y|A Chain A, Solution Structure Of The Rrm Of Srp20 Bound To The Rna
Cauc
Length = 150
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360
C +YV NL TELE AF +GP++ V V N G F FV FE P A+
Sbjct: 74 CKVYVGNLGNNGNKTELERAFGYYGPLRS--VWVARNPPG--FAFVEFEDPRDAADAV 127
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYC----FGFVAFETPGSVQSAL 360
++++NL F+TT L+ F G IK + + NK G FGFV ++ P Q AL
Sbjct: 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 67
Query: 361 E 361
+
Sbjct: 68 K 68
>pdb|2QIY|A Chain A, Yeast Deubiquitinase Ubp3 And Bre5 Cofactor Complex
pdb|2QIY|B Chain B, Yeast Deubiquitinase Ubp3 And Bre5 Cofactor Complex
Length = 154
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 17/138 (12%)
Query: 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTT----------VTTMK 60
+ Q + AF++ YY + P + FY ++ L+ + T VT +
Sbjct: 10 TVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRE 69
Query: 61 AINDRILSLN---YEDYTAEIKTADAQDS--YEKGVIVLVTGCLTGKDNVKKKFTQTFFL 115
IN + S N ++ T D Q + K ++++ TG + KF QTF L
Sbjct: 70 NIN-KFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFIL 128
Query: 116 APQDKGGYF-VLNDVFRF 132
P G F + ND+ RF
Sbjct: 129 LPSSNGSTFDITNDIIRF 146
>pdb|1ZX2|A Chain A, Crystal Structure Of Yeast Ubp3-Associated Protein Bre5
pdb|1ZX2|B Chain B, Crystal Structure Of Yeast Ubp3-Associated Protein Bre5
Length = 147
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 17/138 (12%)
Query: 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTT----------VTTMK 60
+ Q + AF++ YY + P + FY ++ L+ + T VT +
Sbjct: 5 TVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRE 64
Query: 61 AINDRILSLN---YEDYTAEIKTADAQDS--YEKGVIVLVTGCLTGKDNVKKKFTQTFFL 115
IN + S N ++ T D Q + K ++++ TG + KF QTF L
Sbjct: 65 NIN-KFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFIL 123
Query: 116 APQDKGGYF-VLNDVFRF 132
P G F + ND+ RF
Sbjct: 124 LPSSNGSTFDITNDIIRF 141
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWKGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|1OUN|A Chain A, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1OUN|B Chain B, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1A2K|A Chain A, Gdpran-Ntf2 Complex
pdb|1A2K|B Chain B, Gdpran-Ntf2 Complex
pdb|1GY6|A Chain A, Ntf2 From Rat, Ammonium Sulphate Conditions
pdb|1GY6|B Chain B, Ntf2 From Rat, Ammonium Sulphate Conditions
Length = 127
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F++ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFIQHYYQLFANDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGY-CFGFVAFETPGSVQSALE 361
C +YV ++ + + +AF FGPIK + S + F FV +E P + Q ALE
Sbjct: 14 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 73
Query: 362 -ASPILIGDRPADV 374
+ +++G R V
Sbjct: 74 QMNSVMLGGRNIKV 87
>pdb|2GHP|A Chain A, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|B Chain B, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|C Chain C, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|D Chain D, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|E Chain E, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|F Chain F, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|G Chain G, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|H Chain H, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
Length = 292
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 301 EGCSIYVRNLAFTTTSTEL-EEAFKIFGPIKKNGVQVRSNKQGY--CFGFVAFETPGSVQ 357
EG I +RNL+ L E+F+ FG I+K + + + C F FE S +
Sbjct: 209 EGREIXIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFXVFENKDSAE 268
Query: 358 SALEASPILIGDRPADV 374
AL+ + L+G+R V
Sbjct: 269 RALQXNRSLLGNREISV 285
>pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
Length = 98
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 297 NEEAE-----GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE 351
NEE E C++YV NL+F TT ++ E F G IKK + + K F FV +
Sbjct: 8 NEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKTACGFCFVEYY 67
Query: 352 TPGSVQSAL 360
+ ++A+
Sbjct: 68 SRADAENAM 76
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 301 EGCSIYVRNLAFTTTSTELEEAFKIFG-----PIKKNGVQVRSNKQGYCFGFVAFETPGS 355
E C +++ L + TT L E F +G I K+ RS FGF++FE P S
Sbjct: 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR----GFGFLSFEKPSS 57
Query: 356 VQSALEASPILIG 368
V ++ IL G
Sbjct: 58 VDEVVKTQHILDG 70
>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant
pdb|1JB4|B Chain B, Crystal Structure Of Ntf2 M102e Mutant
Length = 127
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F+ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQEFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 284 ALSSDGAPENSNV--------NEEAE-----GCSIYVRNLAFTTTSTELEEAFKIFGPIK 330
AL SD E S NEE E C++YV NL+F TT ++ E F G IK
Sbjct: 8 ALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIK 67
Query: 331 KNGVQVRSNKQGYC-FGFVAFETPGSVQSAL 360
K + + K+ C F FV + + ++A+
Sbjct: 68 KIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
>pdb|2F3J|A Chain A, The Solution Structure Of The Ref2-I Mrna Export Factor
(Residues 1-155)
Length = 177
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Query: 257 RKARPTPPNADQQSPA-MAKPAPVPEASALSSDGAPENSNVNEEAE-GCSIYVRNLAFTT 314
R+ RP + PA ++P P+P+ D E E G + V NL F
Sbjct: 43 RRNRPAIARGGRNRPAPYSRPKPLPDK--WQHDLFDSGCGGGEGVETGAKLLVSNLDFGV 100
Query: 315 TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEA-SPILIGDRPAD 373
+ +++E F FG +KK V + + V FE A++ + + RP D
Sbjct: 101 SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160
Query: 374 VE 375
++
Sbjct: 161 IQ 162
>pdb|1JB5|A Chain A, Crystal Structure Of Ntf2 M118e Mutant
pdb|1JB5|B Chain B, Crystal Structure Of Ntf2 M118e Mutant
Length = 127
Score = 36.2 bits (82), Expect = 0.039, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F+ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I +V G L ++ F Q F L + + ND
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDE 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSV 356
E EG ++++ +L +L + F FG + V + + CFGFV+++ P S
Sbjct: 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA 80
Query: 357 QSALEA-SPILIGDRPADVEAKRA 379
Q+A+++ + IG + V+ KR+
Sbjct: 81 QAAIQSMNGFQIGMKRLKVQLKRS 104
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKK---NGVQVRSNKQGYCFGFVAFETPGSVQSA 359
C +YV ++ + + +AF FGPIK + V +G F FV +E P + Q A
Sbjct: 13 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKG--FAFVEYEVPEAAQLA 70
Query: 360 LE-ASPILIGDR 370
LE + + +G R
Sbjct: 71 LEQXNSVXLGGR 82
>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant
pdb|1JB2|B Chain B, Crystal Structure Of Ntf2 M84e Mutant
Length = 127
Score = 35.4 bits (80), Expect = 0.063, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P + +G++F+ YY + + Y D+S L+ AI +++ SL
Sbjct: 5 PIWEQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQ-----FQGKAAIVEKLSSL 59
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDV 129
++ I D Q + + +I V G L ++ F Q F L + + ND+
Sbjct: 60 PFQKIQHSITAQDHQPTPDSCIISEVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDM 118
Query: 130 FRF 132
FR
Sbjct: 119 FRL 121
>pdb|2HVZ|A Chain A, Solution Structure Of The Rrm Domain Of Sr Rich Factor 9g8
Length = 101
Score = 35.4 bits (80), Expect = 0.077, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEA 362
+YV NL ELE AF +GP++ V + N G F FV FE P + A+
Sbjct: 3 VYVGNLGTGAGKGELERAFSYYGPLRT--VWIARNPPG--FAFVEFEDPRDAEDAVRG 56
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NKQGYCFGFVAFETP 353
++VRNL++T++ +LE+ F +GP+ + + S K+ F FV F P
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 60
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALE 361
G ++ V+NL+ ++ LE+AF FGP++K V V + GFV F + ALE
Sbjct: 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALE 155
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGY-CFGFVAFETPGSVQSALE-A 362
+YV ++ + + +AF FGPIK + S + F FV +E P + Q ALE
Sbjct: 31 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 90
Query: 363 SPILIGDRPADV 374
+ +++G R V
Sbjct: 91 NSVMLGGRNIKV 102
>pdb|1X4A|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor Sf2
Length = 109
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360
C IYV NL + ++E+ F +G I+ + +++ + G F FV FE P + A+
Sbjct: 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRGGPPFAFVEFEDPRDAEDAV 78
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSA 359
+++V + + TT ++L F+++GPIK+ + V + + + + F+ +E + SA
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NKQGYCFGFVAFETPGSVQS 358
+ GC +++ L++ TT L E F FG +K+ V K+ FGFV F V
Sbjct: 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 82
Query: 359 ALEAS 363
L S
Sbjct: 83 VLAQS 87
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSALEA 362
+++V + + TT ++L F+++GPIK+ + V + + + + F+ +E + SA +
Sbjct: 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163
Query: 363 S 363
+
Sbjct: 164 A 164
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGY--CFGFVAFETPGS 355
EA+ SIYV N+ + T+ ELE F G + N V + +K G+ F ++ F S
Sbjct: 3 EADARSIYVGNVDYGATAEELEAHFHGCGSV--NRVTILCDKFSGHPKGFAYIEFSDKES 60
Query: 356 VQSALEASPILIGDRPADVEAKRAN 380
V+++L L R V KR N
Sbjct: 61 VRTSLALDESLFRGRQIKVIPKRTN 85
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGY--CFGFVAFETPGS 355
EA+ SIYV N+ + T+ ELE F G + N V + +K G+ F ++ F S
Sbjct: 2 EADARSIYVGNVDYGATAEELEAHFHGCGSV--NRVTILCDKFSGHPKGFAYIEFSDKES 59
Query: 356 VQSALEASPILIGDRPADVEAKRAN 380
V+++L L R V KR N
Sbjct: 60 VRTSLALDESLFRGRQIKVIPKRTN 84
>pdb|2DGV|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 92
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSA 359
C I+VRNL F T L++ F G + +++ + K C G V FE+P + A
Sbjct: 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGC-GVVKFESPEVAERA 64
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSN-KQGYCFGFVAFETPGSVQSALE- 361
+I+++NL + + L + F FG I V N +GY GFV FET + + A+E
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY--GFVHFETQEAAERAIEK 157
Query: 362 ASPILIGDRPADV 374
+ +L+ DR V
Sbjct: 158 MNGMLLNDRKVFV 170
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSALEA 362
++V L+F T LE+ F +G I + V+ R ++ FGFV FE + A+ A
Sbjct: 15 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73
>pdb|2DK2|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleoprotein R (Hnrnp R)
Length = 97
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALE 361
++VRNLA T T LE++F FG +++ V+ K + FV FE G+ A++
Sbjct: 18 LFVRNLATTVTEEILEKSFSEFGKLER----VKKLKD---YAFVHFEDRGAAVKAMD 67
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSN-KQGYCFGFVAFETPGSVQSALE- 361
+I+++NL + + L + F FG I V N +GY GFV FET + + A+E
Sbjct: 105 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY--GFVHFETQEAAERAIEK 162
Query: 362 ASPILIGDR 370
+ +L+ DR
Sbjct: 163 MNGMLLNDR 171
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 31.6 bits (70), Expect = 0.88, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSN-KQGYCFGFVAFETPGSVQSALEA 362
+I+++NL + + L + F FG I V N +GY GFV FET + + A+E
Sbjct: 13 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY--GFVHFETQEAAERAIEK 70
Query: 363 -SPILIGDR 370
+ +L+ DR
Sbjct: 71 MNGMLLNDR 79
>pdb|2JVO|A Chain A, Segmental Isotope Labeling Of Npl3
Length = 108
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 290 APENSNVNEEAEG----CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCF 345
P S+++ EG ++VR +EL E F FGP+K+ V++ + F
Sbjct: 15 VPRGSHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKE--VKILNG-----F 67
Query: 346 GFVAFETPGSVQSALE 361
FV FE S A+E
Sbjct: 68 AFVEFEEAESAAKAIE 83
>pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSN-KQGYCFGFVAFETPGSVQSALEA 362
+I+++NL + + L + F FG I V N +GY GFV FET + + A+E
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY--GFVHFETQEAAERAIEK 64
Query: 363 -SPILIGDR 370
+ +L+ DR
Sbjct: 65 MNGMLLNDR 73
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQG-YCFGFVAFETPGSVQSALEAS 363
I+V + TEL E FK FG + + + + KQ FGF+ FE SV A+
Sbjct: 13 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 72
Query: 364 -PILIGDRPADVEAKRA 379
++G + VE KRA
Sbjct: 73 FHDIMGKK---VEVKRA 86
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSVQSALE 361
C + V L+ TT +L E F +GPI + + +++ F FV FE + A E
Sbjct: 13 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 72
>pdb|2G7U|A Chain A, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
pdb|2G7U|B Chain B, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
pdb|2G7U|C Chain C, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
pdb|2G7U|D Chain D, 2.3 A Structure Of Putative Catechol Degradative Operon
Regulator From Rhodococcus Sp. Rha1
Length = 257
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 22/153 (14%)
Query: 214 NEVHASVDSAPVAQGDAPEKKSYASIVKVMKGYNISSAAYVPARKARPTPPNADQQSPAM 273
+E HA +++A + EK ++ + V+ G ++ AA VP R+ + + PA
Sbjct: 80 SESHALIEAAXPRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIXSINVSVGTRVPAY 139
Query: 274 AK----------PAPVPE---ASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELE 320
A PA V E A + PE E E VR F TS ELE
Sbjct: 140 ATSXGRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELE 199
Query: 321 EAF-KIFGPIKKNGVQVRSNKQGYCFGFVAFET 352
+ + P+ G G G VA T
Sbjct: 200 KGLISLAAPVHDAG--------GTVVGVVACST 224
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition Motif
Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQG--YCFGFVAFETPGSVQSALEA 362
I VRN+ F E+ E F FG +K + + G FGFV F T + A A
Sbjct: 18 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSVQSALE 361
C + V L+ TT +L E F +GPI + + +++ F FV FE + A E
Sbjct: 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 75
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSVQSALE 361
C + V L+ TT +L E F +GPI + + +++ F FV FE + A E
Sbjct: 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 106
>pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKK 331
++VRNLA T T LE+AF FG +++
Sbjct: 14 LFVRNLANTVTEEILEKAFSQFGKLER 40
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 291 PENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-----QGYCF 345
P ++ +E + S+YV N+ + +T+ +LE F G I N + + +K +GY
Sbjct: 25 PLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSI--NRITILCDKFSGHPKGY-- 80
Query: 346 GFVAFETPGSVQSALEASPILIGDRPADVEAKRAN 380
++ F SV +A+ + R V KR N
Sbjct: 81 AYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTN 115
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSVQSALE 361
C + V L+ TT +L E F +GPI + + +++ F FV FE + A E
Sbjct: 16 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 75
>pdb|2FHO|B Chain B, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 87
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE 351
+Y+RNL + T+ E+ + F +GPI++ ++V + + +V +E
Sbjct: 15 LYIRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGTAYVVYE 59
>pdb|1X4H|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein 28
Length = 111
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVR-SNKQGYCFGFVAFETPGSVQSA 359
EG ++++RNL+F + L E + FG +K V + + F F T + Q
Sbjct: 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC 73
Query: 360 LEASPI 365
L A+ +
Sbjct: 74 LAAASL 79
>pdb|2CQ0|A Chain A, Solution Structure Of Rna Binding Domain In Eukaryotic
Translation Initiation Factor 3 Subunit 4
Length = 103
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 289 GAPENSNVNEEAE-GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGV-QVRSNKQGYCFG 346
G+ +S N A+ +I V NL+ T T+L+E F+ FG I + + + ++ Q F
Sbjct: 1 GSSGSSGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFA 60
Query: 347 FVAFE 351
F++F
Sbjct: 61 FISFH 65
>pdb|2XNR|A Chain A, Structural Insights Into Cis Element Recognition Of Non-
Polyadenylated Rnas By The Nab3-Rrm
Length = 97
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALE 361
+++ NL S E + F+IF P G ++ N + FGF+ F+ P SV+ A+E
Sbjct: 25 LFIGNLPLKNVSKE--DLFRIFSPY---GHIMQINIKN-AFGFIQFDNPQSVRDAIE 75
>pdb|2L10|A Chain A, Structure Of The Talin Rod Residues, Domain C
Length = 158
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 228 GDAPEKKSYASIVKVMKGYNISSAAYVPARKAR---PTPPNADQQSPAMAK 275
G AP ++ A +V +KG ++SS+ + A KA P PN Q A A+
Sbjct: 91 GQAPSQEDRAQVVSNLKGISMSSSKLLLAAKALSTDPASPNLKSQLAAAAR 141
>pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP 353
+YV+NL L +AF FG I V + + FGFV F +P
Sbjct: 18 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS-KGFGFVCFSSP 65
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 276 PAPVP-EASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGV 334
P P P A + + + E N+ ++A+ +I++ L + ++ +AF +F P+K GV
Sbjct: 404 PFPGPGLAIRILGEVSAEYINILKQAD--AIFIEELKKSDYYHQVSQAFAVFMPLKSVGV 461
Query: 335 QVRSNKQGYCFGFVAFET 352
+ + GY A +T
Sbjct: 462 KGDARHYGYIIALRAVKT 479
>pdb|2DH9|A Chain A, Solution Structure Of The C-Terminal Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 89
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSA 359
I+VRNL F T L++ F G + +++ + K C G V FE+P + A
Sbjct: 8 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGC-GVVKFESPEVAERA 61
>pdb|2KT5|A Chain A, Rrm Domain Of Mrna Export Adaptor Ref2-I Bound To Hsv-1
Icp27 Peptide
Length = 124
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL- 360
G + V NL F + +++E F FG +KK V + + V FE A+
Sbjct: 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMK 94
Query: 361 EASPILIGDRPADVE 375
+ + + RP D++
Sbjct: 95 QYKGVPLDGRPMDIQ 109
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALE 361
+YV NL T L++ F++ GPI + + N + + FV + AL+
Sbjct: 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 59
>pdb|2YKA|A Chain A, Rrm Domain Of Mrna Export Adaptor Ref2-I Bound To Hvs
Orf57 Peptide
Length = 124
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL- 360
G + V NL F + +++E F FG +KK V + + V FE A+
Sbjct: 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMK 94
Query: 361 EASPILIGDRPADVE 375
+ + + RP D++
Sbjct: 95 QYKGVPLDGRPMDIQ 109
>pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 125
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE 351
+Y+RNL + T+ E+ + F +GPI++ ++V + + +V +E
Sbjct: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGTAYVVYE 65
>pdb|3LQV|A Chain A, Branch Recognition By Sf3b14
pdb|3LQV|B Chain B, Branch Recognition By Sf3b14
Length = 115
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALE 361
+Y+RNL + T+ E+ + F +GPI++ ++V + + +V +E ++A++
Sbjct: 11 LYIRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGTAYVVYEDIFDAKNAVD 65
>pdb|2XNQ|A Chain A, Structural Insights Into Cis Element Recognition Of Non-
Polyadenylated Rnas By The Nab3-Rrm
Length = 97
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALE 361
+++ NL S E + F+IF P G ++ N + FGF+ F+ P SV+ A+E
Sbjct: 25 LFIGNLPLKNVSKE--DLFRIFSPY---GHIMQINIKN-AFGFIQFDNPQSVRDAIE 75
>pdb|2L41|A Chain A, Nab3 Rrm - Ucuu Complex
Length = 77
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALE 361
+++ NL S E + F+IF P G ++ N + FGF+ F+ P SV+ A+E
Sbjct: 5 LFIGNLPLKNVSKE--DLFRIFSPY---GHIMQINIKN-AFGFIQFDNPQSVRDAIE 55
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPI-KKNGVQVRSNKQGYCFGFV 348
+IYV NL ++ TS +++E F FG + + R K+ FGFV
Sbjct: 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFV 48
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALE 361
S+ VRNL ++ LEEAF +FG +++ V V + G V F + + AL+
Sbjct: 97 ASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALD 155
>pdb|2KVI|A Chain A, Structure Of Nab3 Rrm
Length = 96
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALE 361
+++ NL S E + F+IF P G ++ N + FGF+ F+ P SV+ A+E
Sbjct: 13 LFIGNLPLKNVSKE--DLFRIFSPY---GHIMQINIKN-AFGFIQFDNPQSVRDAIE 63
>pdb|2OSQ|A Chain A, Nmr Structure Of Rrm-1 Of Yeast Npl3 Protein
Length = 74
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQS 358
E ++VR +EL E F FGP+K+ V++ + F FV FE S
Sbjct: 1 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKE--VKILNG-----FAFVEFEEAESAAK 53
Query: 359 ALE 361
A+E
Sbjct: 54 AIE 56
>pdb|3T4W|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|C Chain C, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
pdb|3T4W|D Chain D, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Sulfitobacter Sp
Length = 432
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 251 AAYVPARKARPTPPNADQQSPAMAKPAPVPEAS 283
A Y P P PP+A +Q A+A+ P+P A+
Sbjct: 248 APYSPLWYEEPIPPDAVEQMAAVARAVPIPVAT 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,574,609
Number of Sequences: 62578
Number of extensions: 461001
Number of successful extensions: 949
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 907
Number of HSP's gapped (non-prelim): 81
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)