BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012356
(465 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nxt3 PE=1 SV=1
Length = 434
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 123/453 (27%), Positives = 189/453 (41%), Gaps = 80/453 (17%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+G FV++YY L++ P +H FY S L D S++ + I+++IL L++++
Sbjct: 18 IGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQNC 77
Query: 75 TAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134
I D+ S G+++ V G ++ K + +KF QTFFLA Q GYFVLND+FRF+
Sbjct: 78 KVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQ-PNGYFVLNDIFRFLR 136
Query: 135 EN-------------ESLENNSDSVVNETAPTANVTEAPEPAHDQDHIP-----ADRAIV 176
E+ E + S+ VN ++ A E H QD A A++
Sbjct: 137 EDVEEEEESPDAVEKEKKDVASEPYVNGVQSQEHLPSAKEEGHYQDPAATENNFATAALI 196
Query: 177 IEGEDLDNGPEVCDPSD----KEEGSVVEDEIVEPPSNSVQNEVHASVDSAPVAQGD--- 229
D N + P + E SV V N +Q+E S A G
Sbjct: 197 SNETDSLNQATLAVPEEPVIQVTEASV--PSFVSQQENQLQDEALTSNSKNADAIGASDA 254
Query: 230 --APEKKSYASIV-----KVMKGYNISSAAYVPARKARPTPPNADQ-QSPAMAKPAPVPE 281
A KS+A ++ V ++SS A + + NADQ Q P AP +
Sbjct: 255 NVATAPKSWADLIARNHPDVKSQASVSSTASTTGQTVKGV--NADQTQQPT----APYTQ 308
Query: 282 ASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQ 341
++ L S++V+N+ T+ L+ A IFGP+K ++ K
Sbjct: 309 SNELLE---------------TSVFVKNIPPETSDVSLKSAMSIFGPVK--AIEFARRKG 351
Query: 342 GYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRANSRVGGGGGGRGRFSSGRVGFR 401
FV E VQ AL + I + ++E +R R SG+
Sbjct: 352 TAYVDFVNHEC---VQLALNKKTLQINNATLNIEERR-------------RLFSGKFNKS 395
Query: 402 SDSFKGRGNFGGGRGYGRNEFRG-QGEFSGRPK 433
D K N+ G + RN +G +G F GR K
Sbjct: 396 GDK-KSNDNYNGMK---RNFRKGNRGAFDGRSK 424
>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus
GN=G3bp1 PE=1 SV=1
Length = 465
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSR--PDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+Q+P ++HRFY +S + DSNG V K I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYAHGGLDSNGKPADAVYGQKEIHRKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
+S N+ + +I+ DA + GV+V V G L+ + ++F QTF LAP+ ++
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDIFRYQDE 136
>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii
GN=G3BP1 PE=2 SV=1
Length = 466
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFY-QDSSLLSR-PDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+Q+P ++HRFY ++SS + DSNG V K I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
+S N+ + +I+ DA + GV+V V G L+ + ++F QTF LAP+ ++
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDIFRYQDE 136
>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens
GN=G3BP1 PE=1 SV=1
Length = 466
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFY-QDSSLLSR-PDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+Q+P ++HRFY ++SS + DSNG V K I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
+S N+ + +I+ DA + GV+V V G L+ + ++F QTF LAP+ ++
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDIFRYQDE 136
>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus
GN=G3BP PE=2 SV=1
Length = 465
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFY-QDSSLLSR-PDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+Q+P ++HRFY ++SS + DSNG V K I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
+S N+ + +I+ DA + GV+V V G L+ + ++F QTF LAP+ ++
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDIFRYQDE 136
>sp|Q5R9L3|G3BP2_PONAB Ras GTPase-activating protein-binding protein 2 OS=Pongo abelii
GN=G3BP2 PE=2 SV=1
Length = 482
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFY--QDSSLLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+++P +HRFY S + D++G V I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
LSLN+ + +I+ DA + GV+V V G L+ ++KF QTF LAP+ ++
Sbjct: 66 LSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDMFRYEDE 136
>sp|Q9UN86|G3BP2_HUMAN Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens
GN=G3BP2 PE=1 SV=2
Length = 482
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFY--QDSSLLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+++P +HRFY S + D++G V I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
LSLN+ + +I+ DA + GV+V V G L+ ++KF QTF LAP+ ++
Sbjct: 66 LSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDMFRYEDE 136
>sp|P97379|G3BP2_MOUSE Ras GTPase-activating protein-binding protein 2 OS=Mus musculus
GN=G3bp2 PE=1 SV=2
Length = 482
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 5/131 (3%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFY--QDSSLLSRPDSNGS-MTTVTTMKAINDRI 66
PS +VG FV QYY +L+++P +HRFY S + D++G V I+ ++
Sbjct: 6 PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKV 65
Query: 67 LSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK--GGYF 124
LSLN+ + +I+ DA + GV+V V G L+ ++KF QTF LAP+ ++
Sbjct: 66 LSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY 125
Query: 125 VLNDVFRFVEE 135
V ND+FR+ +E
Sbjct: 126 VHNDMFRYEDE 136
>sp|Q96VN3|NTF2_EMENI Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3
SV=1
Length = 125
Score = 65.5 bits (158), Expect = 8e-10, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 13 QVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYE 72
Q + FV YY + + Y+D S+L+ S + + I +++ SL ++
Sbjct: 5 QSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETS-----AIQGVAGIIEKLTSLPFQ 59
Query: 73 DYTAEIKTADAQDSYEKG-VIVLVTGCL-TGKDNVKKKFTQTFFLAPQDKGGYFVLNDVF 130
++ T DAQ S E G ++VLVTG L ++ +TQTF L P G YFVLNDVF
Sbjct: 60 KVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVF 119
Query: 131 RFV 133
R +
Sbjct: 120 RLI 122
>sp|Q7ZWM3|CEL3B_XENLA CUGBP Elav-like family member 3-B OS=Xenopus laevis GN=tnrc4-b PE=2
SV=1
Length = 462
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 205 VEPPSNSV-QNEVHASVDSAPVAQGDAPEKKSYASIVKVMKGYNISSAAYVPARKARPTP 263
V+P S ++ N +H +PVAQ D P +++YA M+ Y +AAY P
Sbjct: 301 VQPSSEAIYTNGLHPYPAQSPVAQLD-PLQQAYAG----MQHY---TAAY---------P 343
Query: 264 PNADQQSPAMAKPAPVPEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAF 323
SPA +P A+ + P+ E EGC+I++ +L T +E+ + F
Sbjct: 344 AAYGLVSPAFTQP------PAILTQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEILQMF 397
Query: 324 KIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSVQSALEA-SPILIGDRPADVEAKR 378
FG + V V R+ Q CFGFV+F+ PGS Q+A+++ + IG + V+ KR
Sbjct: 398 LPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKR 454
>sp|Q86HW7|NTF2_DICDI Nuclear transport factor 2 OS=Dictyostelium discoideum GN=nutf2
PE=1 SV=1
Length = 127
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69
P VG FVE YY I + + + YQ + L+ ++ AI I+ L
Sbjct: 6 PQVVGVGKQFVEHYYGIFDSNRAGLTQIYQQQTTLTWEGK-----FLSGADAIVKHIVEL 60
Query: 70 NYEDYTAEIKTADAQDSYEKGVIVLVTGCLT--GKDNVKKKFTQTFFLAPQDKGGYFVLN 127
++ +I + D Q +Y+ G+++ VTG L G+ + KF Q F LA + G + ++N
Sbjct: 61 PFQQTNRKINSIDCQQTYQPGIMITVTGTLIIDGEAKNQLKFVQVFNLA-SNNGSFLLIN 119
Query: 128 DVFRFV 133
D FR V
Sbjct: 120 DFFRLV 125
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 26/184 (14%)
Query: 198 SVVEDEIVEPPSNSV-QNEVHASVDSAPVAQGDAPEKKSYASIVKVMKGYNISSAAYVPA 256
+V V+P S ++ N +H +PVAQ D P +++YA M+ Y +AAY
Sbjct: 294 AVPTQSTVQPSSEAIYTNGLHPYPAQSPVAQLD-PLQQAYAG----MQHY---TAAY--- 342
Query: 257 RKARPTPPNADQQSPAMAKPAPVPEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTS 316
P SPA + A+ P+ E EGC+I++ +L T
Sbjct: 343 ------PAAYGLVSPAFTQ------PPAILQQQPPQQQQQREGPEGCNIFIYHLPQEFTD 390
Query: 317 TELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSVQSALEA-SPILIGDRPADV 374
+E+ + F FG + V V R+ Q CFGFV+F+ PGS Q+A++A + IG + V
Sbjct: 391 SEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAMNGFQIGMKRLKV 450
Query: 375 EAKR 378
+ KR
Sbjct: 451 QLKR 454
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 214 NEVHASVDSAPVAQGDAPEKKSYASIVKVMKGYNISSAAYVPARKARPTPPNADQQSPAM 273
N VH +P A D P +++YA M+ Y AAY A P PP
Sbjct: 301 NGVHPYPAQSPAAPVD-PLQQAYAG----MQHYTAYPAAYSLVAPAFPQPP--------- 346
Query: 274 AKPAPVPEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNG 333
A A P + E +GC+I++ +L T +E+ + F FG +
Sbjct: 347 ALVAQQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAK 406
Query: 334 VQV-RSNKQGYCFGFVAFETPGSVQSALEA-SPILIGDRPADVEAKR 378
V V R+ Q CFGFV+F+ P S Q+A++A + IG + V+ KR
Sbjct: 407 VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 453
>sp|Q10100|NTF2_SCHPO Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ntf2 PE=3 SV=2
Length = 123
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ F + YY + Y++ S+LS + T KAI ++++SL ++
Sbjct: 7 LATQFTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGT-----KAIVEKLVSLPFQRV 61
Query: 75 TAEIKTADAQDSYEKG-VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132
I T DAQ + G VIV+VTG L ++ + ++++Q F L + G Y+VLND+FR
Sbjct: 62 QHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDLFRL 120
>sp|Q6FRC6|NTF2_CANGA Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NTF2 PE=3
SV=1
Length = 125
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ F E YY+ + Y+D S+L+ S + K+I ++++SL ++
Sbjct: 8 LAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFETSQ-----LQGAKSIVEKLVSLPFQKV 62
Query: 75 TAEIKTADAQDSYEKG-VIVLVTGCLTGKDNVK-KKFTQTFFLAPQDKGGYFVLNDVFRF 132
I T DAQ + G V+V++TG L D ++F+Q F L P D Y+V ND+FR
Sbjct: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIP-DGNSYYVFNDIFRL 121
>sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2
SV=1
Length = 126
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
V AFVE YY + + YQ++S+L+ + +++I ++ SL ++
Sbjct: 9 VSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQK-----IQGVQSIVAKLTSLPFQQC 63
Query: 75 TAEIKTADAQDS-YEKGVIVLVTGCL--TGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFR 131
I T D Q S G++V V+G L G+++ K F+Q F L P +G ++V ND+FR
Sbjct: 64 KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALK-FSQMFHLMPTPQGSFYVFNDIFR 122
Query: 132 F 132
Sbjct: 123 L 123
>sp|Q8N6W0|CELF5_HUMAN CUGBP Elav-like family member 5 OS=Homo sapiens GN=CELF5 PE=1 SV=1
Length = 485
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 268 QQSPAMAKPAPV-PEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIF 326
QQ AM A + P A ++ E EGC++++ +L TEL + F F
Sbjct: 364 QQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPF 423
Query: 327 GPIKKNGVQV-RSNKQGYCFGFVAFETPGSVQSALEA-SPILIGDRPADVEAKR 378
G I + V + R+ Q CFGFV+F+ P S Q+A++A + IG + V+ KR
Sbjct: 424 GNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 477
>sp|Q9XJ54|NTF2_ORYSJ Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2
PE=2 SV=1
Length = 122
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 60/124 (48%), Gaps = 10/124 (8%)
Query: 12 AQVVGNAFVEQYYHILHQS-PGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70
A V AFVE YY + P LV YQD S+L+ AI ++ SL
Sbjct: 3 ADAVAKAFVEHYYRTFDTNRPALV-SLYQDGSMLTFEGQQ-----FLGAAAIAGKLGSLP 56
Query: 71 YEDYTAEIKTADAQDSY-EKGVIVLVTGCL-TGKDNVKKKFTQTFFLAPQDKGGYFVLND 128
+ +I T D Q S + G++V V+G L TG D KF+Q F L P G ++V ND
Sbjct: 57 FAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQND 115
Query: 129 VFRF 132
+FR
Sbjct: 116 MFRL 119
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSV 356
E EGC+I++ +L T +E+ + F FG + V V R+ Q CFGFV+F+ P S
Sbjct: 362 EGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASA 421
Query: 357 QSALEA-SPILIGDRPADVEAKR 378
Q+A++A + IG + V+ KR
Sbjct: 422 QAAIQAMNGFQIGMKRLKVQLKR 444
>sp|P87102|NTF2_NEUCR Nuclear transport factor 2 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ntf-2 PE=2 SV=1
Length = 124
Score = 52.4 bits (124), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ FV YY + Y+D+S+L+ + + I +++ SL ++
Sbjct: 8 IATQFVAHYYSTFDSDRKNLAGLYRDNSMLTFEGAQS-----LGAQGITEKLTSLPFQKV 62
Query: 75 TAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKK-KFTQTFFLAPQDKGGYFVLNDVFRFV 133
E DAQ + G+I+LVTG L D + ++Q F L+ G +FV ND+F+ V
Sbjct: 63 KHEYGPPDAQPTATGGIIILVTGQLIVDDEQRPLGYSQAFQLSQDASGQWFVFNDIFKLV 122
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Query: 214 NEVHASVDSAPVAQGDAPEKKSYASIVKVMKGYNISSAAYVPARKARPTPPNADQQSPAM 273
N VH +P A D P +++YA + Y AAY A P PP +
Sbjct: 301 NGVHPYPAQSPAAPVD-PLQQAYAGMQHYTAAY---PAAYSLVAPAFPQPPAL------V 350
Query: 274 AKPAPVPEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNG 333
A+ P P + E +GC+I++ +L T +E+ + F FG +
Sbjct: 351 AQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAK 410
Query: 334 VQV-RSNKQGYCFGFVAFETPGSVQSALEA-SPILIGDRPADVEAKR 378
V V R+ Q CFGFV+F+ P S Q+A++A + IG + V+ KR
Sbjct: 411 VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 457
>sp|Q75AA5|NTF2_ASHGO Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1
Length = 125
Score = 52.0 bits (123), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ F E YY+ + Y+D S+L+ S + K I ++++SL ++
Sbjct: 8 LAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQ-----LQGAKDIVEKLVSLPFQKV 62
Query: 75 TAEIKTADAQDSYEKG-VIVLVTGCLTGKDNVK-KKFTQTFFLAPQDKGGYFVLNDVFRF 132
I T DAQ + G V+V++TG L D ++F+Q F L P+ Y+V ND+FR
Sbjct: 63 QHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMPEGNS-YYVFNDIFRL 121
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSV 356
E +GC+I++ +L T +E+ + F FG + V V R+ Q CFGFV+F+ P S
Sbjct: 375 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 434
Query: 357 QSALEA-SPILIGDRPADVEAKR 378
Q+A++A + IG + V+ KR
Sbjct: 435 QAAIQAMNGFQIGMKRLKVQLKR 457
>sp|Q6DGV1|CELF4_DANRE CUGBP Elav-like family member 4 OS=Danio rerio GN=celf4 PE=2 SV=1
Length = 520
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSV 356
E EGC++++ +L EL + F FG + + V V R+ Q CFGFV+F+ PGS
Sbjct: 430 EGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSA 489
Query: 357 QSALEA-SPILIGDRPADVEAKR 378
Q+A+++ + IG + V+ KR
Sbjct: 490 QAAIQSMNGFQIGMKRLKVQLKR 512
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYC----FGFVAFETPGSVQ 357
GC+++++NL F TT +L+E F G +K + + NK G FGFV + P Q
Sbjct: 729 GCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQ 788
Query: 358 SALE 361
AL+
Sbjct: 789 KALK 792
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Query: 286 SSDGAPENSNVNEE-------------AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKN 332
++ GAP+N+ + + AE ++VRNL +T+T +LE+ F +GP+ +
Sbjct: 372 TTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSEL 431
Query: 333 GVQVRS-NKQGYCFGFVAFETP 353
+ S K+ F F+ F P
Sbjct: 432 HYPIDSLTKKPKGFAFITFMFP 453
>sp|Q8NJ52|NTF2_DAVTA Nuclear transport factor 2 OS=Davidiella tassiana GN=NTF2 PE=1 SV=1
Length = 125
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ F E YY + Y+++S+L+ S T I ++ L ++
Sbjct: 7 IAQQFTEFYYKTFDTDRAQLAPLYRENSMLTFEQSPFLGTA-----NIVGKLQELPFQRI 61
Query: 75 TAEIKTADAQDSYEKG-VIVLVTGCLTGKDNVK-KKFTQTFFLAPQDKGGYFVLNDVFRF 132
++ T DAQ S E G ++V+V+G L ++ + +TQTF L P D G Y+V NDVFR
Sbjct: 62 EHQVATVDAQPSNESGGILVVVSGALLVEEERRPMSYTQTFQLLPAD-GAYYVFNDVFRL 120
Query: 133 V 133
V
Sbjct: 121 V 121
>sp|Q96J87|CELF6_HUMAN CUGBP Elav-like family member 6 OS=Homo sapiens GN=CELF6 PE=1 SV=1
Length = 481
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSV 356
E EGC++++ +L EL + F FG + V V R+ Q CFGFV+F+ P S
Sbjct: 391 EGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSA 450
Query: 357 QSALEA-SPILIGDRPADVEAKR 378
Q+A++A + IG + V+ KR
Sbjct: 451 QTAIQAMNGFQIGMKRLKVQLKR 473
>sp|P33331|NTF2_YEAST Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NTF2 PE=1 SV=2
Length = 125
Score = 50.4 bits (119), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 35 HRFYQDSSLLSRPDSNGSMTTVTT-----MKAINDRILSLNYEDYTAEIKTADAQDSYEK 89
++F D S L N SM T T K I ++++SL ++ I T DAQ +
Sbjct: 18 NQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPN 77
Query: 90 G-VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132
G V+V++TG L ++ ++F+Q F L P D Y+V ND+FR
Sbjct: 78 GDVLVMITGDLLIDEEQNPQRFSQVFHLIP-DGNSYYVFNDIFRL 121
>sp|Q7TN33|CELF6_MOUSE CUGBP Elav-like family member 6 OS=Mus musculus GN=Celf6 PE=2 SV=1
Length = 460
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSV 356
E EGC++++ +L EL + F FG + V V R+ Q CFGFV+F+ P S
Sbjct: 370 EGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSA 429
Query: 357 QSALEA-SPILIGDRPADVEAKR 378
Q+A++A + IG + V+ KR
Sbjct: 430 QTAIQAMNGFQIGMKRLKVQLKR 452
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
+ F E YY+ + Y++ S+L+ T + K I ++++SL ++
Sbjct: 8 LAQQFTEFYYNQFDSDRTQLGNLYREQSMLTF-----ETTQLQGAKDIVEKLVSLPFQKV 62
Query: 75 TAEIKTADAQDSYEKG-VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132
I T DAQ + G V+V++TG L ++ ++F+Q F L P+ Y+V ND+FR
Sbjct: 63 AHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSS-YYVYNDIFRL 121
>sp|A0JM51|CELF5_XENTR CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2
SV=1
Length = 486
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQV-RSNKQGYCFGFVAFETPGSV 356
E EGC++++ +L EL + F FG I + V + R+ Q CFGFV+F+ P S
Sbjct: 396 EGPEGCNLFIYHLPQEFGDNELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPSSA 455
Query: 357 QSALEA-SPILIGDRPADVEAKR 378
Q+A++A + IG + V+ KR
Sbjct: 456 QTAIQAMNGFQIGMKRLKVQLKR 478
>sp|Q9P926|NTF2_CANAX Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1
Length = 124
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 36 RFYQDSSLLSRPDSNGSMTTVTTMKA-----INDRILSLNYEDYTAEIKTADAQDSYEKG 90
+F D S L N SM T T + I +++ SL ++ I T DAQ + G
Sbjct: 19 QFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASLPFQKVAHRISTLDAQPASANG 78
Query: 91 -VIVLVTG-CLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132
++V+VTG L ++ ++++Q F L P D G Y+V ND+FR
Sbjct: 79 DILVMVTGELLIDEEQNAQRYSQVFHLIP-DNGSYYVFNDIFRL 121
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=mrd-1 PE=3 SV=1
Length = 827
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 292 ENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSN--KQGYC----F 345
E + E+ E S++VRNL F+TTS L +AFK + V+ +++ K G F
Sbjct: 588 ERDDAEEQLETSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGF 647
Query: 346 GFVAFETPGSVQSALE 361
GFVAF T Q+AL+
Sbjct: 648 GFVAFRTKDQAQAALK 663
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYC----FGFVAFETPGSVQ 357
GC+++++NL F+TT L+ F G IK + + NK G FGFV ++ P Q
Sbjct: 721 GCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 780
Query: 358 SALE 361
AL+
Sbjct: 781 KALK 784
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 292 ENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NKQGYCFGFVAF 350
EN + A+ ++VRNL++T++ +LE+ F +GP+ + + S K+ F FV F
Sbjct: 389 ENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTF 448
Query: 351 ETP 353
P
Sbjct: 449 MFP 451
>sp|Q21735|NTF2_CAEEL Probable nuclear transport factor 2 OS=Caenorhabditis elegans
GN=ran-4 PE=3 SV=1
Length = 133
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRIL-- 67
P + V AF++ YY G+ Q S L P+ N MT D IL
Sbjct: 5 PDYESVAKAFIQHYYSKFDVGDGMSRA--QGLSDLYDPE-NSYMTFEGQQAKGRDGILQK 61
Query: 68 --SLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFV 125
+L + I D+Q Y+ + V+V G L ++ F+Q F L P ++G YF+
Sbjct: 62 FTTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYFI 121
Query: 126 LNDVFRFVEEN 136
N++FR N
Sbjct: 122 GNEIFRLDLHN 132
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGV-QVRSNKQGYCFGFVAFETPGSVQSALEA 362
S+++ N+ F +T E+EE FK G I K + + + K+ F ++ F+ S+++AL
Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVM 115
Query: 363 SPILIGDRPADVEAKRANSRVGGGGGGRG 391
+ L RP V AKR N G G G RG
Sbjct: 116 NGSLFRSRPIVVTAKRTNIP-GMGHGVRG 143
>sp|P53741|BRE5_YEAST UBP3-associated protein BRE5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRE5 PE=1 SV=1
Length = 515
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTT----------VTTMK 60
+ Q + AF++ YY + P + FY ++ L+ + T VT +
Sbjct: 4 TVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRE 63
Query: 61 AINDRILSLN---YEDYTAEIKTADAQDS--YEKGVIVLVTGCLTGKDNVKKKFTQTFFL 115
IN + S N ++ T D Q + K ++++ TG + KF QTF L
Sbjct: 64 NIN-KFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFIL 122
Query: 116 APQDKGGYF-VLNDVFRFV 133
P G F + ND+ RF+
Sbjct: 123 LPSSNGSTFDITNDIIRFI 141
>sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans
GN=EEED8.12 PE=4 SV=1
Length = 197
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGV-QVRSNKQGYCFGFVAFETPGSVQSALEA 362
S+++ N+ F +T E+EE FK G I + + + + K+ F ++ F+ S+++AL
Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVM 121
Query: 363 SPILIGDRPADVEAKRANSRVGGGGGGRG 391
+ L RP V AKR N G G G RG
Sbjct: 122 NGSLFRSRPIVVTAKRTNIP-GMGHGVRG 149
>sp|Q6BWC0|NTF2_DEBHA Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NTF2 PE=3 SV=1
Length = 124
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 15 VGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDY 74
V + F YY + Y++ S+L+ S + K I ++++SL ++
Sbjct: 8 VASEFCNFYYQQFDSDRTQLGNLYREQSMLTFETSQ-----LQGAKDIVEKLVSLPFQKV 62
Query: 75 TAEIKTADAQDSYEKG-VIVLVTGCLTGKDNVK-KKFTQTFFLAPQDKGGYFVLNDVFRF 132
I T DAQ G ++V+VTG L D ++++Q F L P D Y+V ND+FR
Sbjct: 63 AHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIP-DGNSYYVFNDIFRL 121
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 74/179 (41%), Gaps = 20/179 (11%)
Query: 261 PTPPNADQQSP----AMAKPAPVPEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTS 316
P PP QQ+ A PE G PE EA+ S+YV N+ + ++
Sbjct: 104 PRPPGVQQQAEEEEGTAAGQLLSPETVGCPLSGTPEE---KVEADHRSVYVGNVDYGGSA 160
Query: 317 TELEEAFKIFGPIKKNGV---QVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPAD 373
ELE F G + + + + + +GY ++ F T GSVQ+A+E L R
Sbjct: 161 EELEAHFSRCGEVHRVTILCDKFSGHPKGY--AYIEFATKGSVQAAVELDQSLFRGRVIK 218
Query: 374 VEAKRAN---SRVGGGGGGRGRFSSGRVGFRSDSFKGRGNFGGGRGYGRNEFRGQGEFS 429
V KR N GG RG S F +GR R G+N R +G+FS
Sbjct: 219 VLPKRTNFPGISSTDRGGLRGHPGSRGAPFPHSGLQGRPRL---RPQGQN--RARGKFS 272
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYC-FGFVAFETPGSVQSALE- 361
++Y+ N++F TT +L E F G IKK + + N + C F FV F + + A++
Sbjct: 35 TVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKY 94
Query: 362 ASPILIGDRPADVEAKRANSRVGGGGGGRGRFSSGRVG--FRSDSFKGRGNFG 412
S ++ DRP V+ G GRGR S G+V +R+D RG +G
Sbjct: 95 ISGTILDDRPIRVDFDWGFQE--GRQWGRGR-SGGQVRDEYRTDYDPARGGYG 144
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVR-SNKQGYCFGFVAFETPGSV 356
E ++ C +++ L T+ + L F+ FG + V V K+ CFGFV +
Sbjct: 2 ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA 61
Query: 357 QSALEASPILIGDRPADVEAKRANSR 382
+A+ ASP + VE KRA SR
Sbjct: 62 DAAMAASPHAVDGNT--VELKRAVSR 85
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK---QGYCFGFVAFETPGSV 356
+E ++V NL F+ S L F+ G ++ V+V +K + FGFV T V
Sbjct: 84 SEDLKLFVGNLPFSVDSAALAGLFERAGNVEM--VEVIYDKLTGRSRGFGFVTMSTKEEV 141
Query: 357 QSA--------LEASPILIGDRPADVEAKRANSRVGGGGGGRGRFSSGRVGFRSDSFKGR 408
++A ++ I + PA AKR NS GGG GG + GR G
Sbjct: 142 EAAEQQFNGYEIDGRAIRVNAGPA--PAKRENSSFGGGRGGNSSYGGGR--------DGN 191
Query: 409 GNFGGGRG 416
+FGG RG
Sbjct: 192 SSFGGARG 199
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360
C IYV NL + ++E+ F +G I+ + +++ + G F FV FE P + A+
Sbjct: 16 CRIYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRGGPPFAFVEFEDPRDAEDAV 71
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSALEA 362
++V L F TT LE+ F +G + + V+ R +K+ FGFV FE P + A+ A
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 295 NVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK---QGYCFGFVAFE 351
N E + S+YV N+ ++ T EL+ F G + N V + +K F ++ F
Sbjct: 47 NDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSV--NRVTILCDKFTGHPKGFAYIEFS 104
Query: 352 TPGSVQSALEASPILIGDRPADVEAKRAN 380
P V +AL + ++ +RP V KR N
Sbjct: 105 EPSLVPNALLLNGSMLHERPLKVTPKRTN 133
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQS 358
+E ++V L F T LE+ F FGPI + V+ R ++ FGF+ F P
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 359 ALEA 362
A+ A
Sbjct: 63 AMRA 66
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 305 IYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSALEA 362
+++ L F T LE+ F +G I + V+ R K+ FGFV FE P + A+ A
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
>sp|P20397|NUCL_XENLA Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3
Length = 651
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 276 PAPVPEASALSSDGAPENSNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQ 335
P +PEA +D A +EG SI++ NL T EL++A + F K +Q
Sbjct: 215 PKTIPEAKKTKTDTA---------SEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQ 265
Query: 336 VRSNKQGYCFGFVAFETPGSVQSALEAS 363
FG+V F + V+ AL+ +
Sbjct: 266 DIRIGNSKKFGYVDFSSEEEVEKALKLT 293
>sp|Q28FB9|THOC4_XENTR THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1
Length = 260
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 8/107 (7%)
Query: 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSA-- 359
G + V NL F + +++E F FG +KK V + + V FE A
Sbjct: 108 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMK 167
Query: 360 ------LEASPILIGDRPADVEAKRANSRVGGGGGGRGRFSSGRVGF 400
L+ P+ I + +EA+R + GGG R G +GF
Sbjct: 168 QYNGVPLDGRPMNIQLVTSQIEAQRRPIQSQSRGGGITRPRGGAIGF 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,364,025
Number of Sequences: 539616
Number of extensions: 9413528
Number of successful extensions: 48470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 813
Number of HSP's that attempted gapping in prelim test: 33523
Number of HSP's gapped (non-prelim): 8291
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)