Query 012356
Match_columns 465
No_of_seqs 461 out of 2654
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 01:46:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0116 RasGAP SH3 binding pro 100.0 3.2E-64 6.9E-69 505.6 34.9 358 1-383 2-370 (419)
2 KOG2104 Nuclear transport fact 100.0 6.9E-35 1.5E-39 235.7 12.1 121 11-136 5-125 (126)
3 cd00780 NTF2 Nuclear transport 100.0 5E-32 1.1E-36 232.2 14.6 118 11-134 1-119 (119)
4 PF02136 NTF2: Nuclear transpo 99.9 8.6E-26 1.9E-30 193.0 11.7 113 15-132 1-118 (118)
5 KOG4353 RNA export factor NXT1 99.9 1.1E-23 2.4E-28 173.1 7.2 117 11-135 11-137 (139)
6 PLN03134 glycine-rich RNA-bind 99.8 7.3E-18 1.6E-22 148.8 14.4 81 301-381 33-115 (144)
7 KOG0107 Alternative splicing f 99.6 6.2E-15 1.3E-19 128.9 14.2 82 300-385 8-90 (195)
8 KOG0105 Alternative splicing f 99.6 2E-15 4.4E-20 132.8 10.0 76 302-379 6-82 (241)
9 TIGR01659 sex-lethal sex-letha 99.6 1.2E-14 2.6E-19 146.1 15.9 81 302-382 193-277 (346)
10 TIGR01648 hnRNP-R-Q heterogene 99.5 1.4E-13 3.1E-18 145.6 16.5 74 302-382 233-309 (578)
11 KOG0121 Nuclear cap-binding pr 99.5 2.5E-14 5.4E-19 118.8 8.0 80 300-379 34-115 (153)
12 TIGR01659 sex-lethal sex-letha 99.5 4.9E-13 1.1E-17 134.5 16.7 83 297-379 102-186 (346)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 9.5E-13 2.1E-17 133.6 13.5 82 300-381 267-350 (352)
14 PF00076 RRM_1: RNA recognitio 99.4 6.8E-13 1.5E-17 101.6 8.1 69 305-373 1-70 (70)
15 KOG0149 Predicted RNA-binding 99.4 3.5E-13 7.5E-18 123.5 7.4 80 299-378 9-89 (247)
16 KOG0113 U1 small nuclear ribon 99.4 4.6E-12 9.9E-17 119.6 14.2 82 300-381 99-182 (335)
17 KOG0125 Ataxin 2-binding prote 99.4 1.8E-12 3.9E-17 123.7 11.0 79 300-379 94-173 (376)
18 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2E-12 4.4E-17 131.1 10.4 80 302-381 3-84 (352)
19 KOG0122 Translation initiation 99.4 8.8E-12 1.9E-16 114.8 12.6 85 296-380 183-269 (270)
20 PLN03120 nucleic acid binding 99.3 6.7E-12 1.5E-16 118.9 10.2 77 302-380 4-80 (260)
21 PF14259 RRM_6: RNA recognitio 99.3 8.9E-12 1.9E-16 95.9 7.4 69 305-373 1-70 (70)
22 KOG4207 Predicted splicing fac 99.3 1.1E-11 2.4E-16 111.3 9.0 80 300-379 11-92 (256)
23 PLN03213 repressor of silencin 99.3 1.8E-11 3.8E-16 122.3 9.5 78 299-379 7-87 (759)
24 TIGR01645 half-pint poly-U bin 99.2 2.9E-11 6.3E-16 128.4 10.2 79 300-378 105-185 (612)
25 PLN03121 nucleic acid binding 99.2 5.7E-11 1.2E-15 110.9 9.9 77 300-378 3-79 (243)
26 TIGR01645 half-pint poly-U bin 99.2 4.4E-11 9.6E-16 127.0 10.4 81 301-381 203-285 (612)
27 KOG0117 Heterogeneous nuclear 99.2 3.7E-10 8E-15 112.0 13.7 73 301-380 258-331 (506)
28 KOG4212 RNA-binding protein hn 99.2 1.9E-10 4.2E-15 113.5 11.6 80 302-381 44-125 (608)
29 smart00362 RRM_2 RNA recogniti 99.2 1.6E-10 3.5E-15 87.8 8.6 71 304-375 1-72 (72)
30 KOG0146 RNA-binding protein ET 99.2 3.6E-11 7.8E-16 111.8 5.7 85 298-382 281-367 (371)
31 TIGR01628 PABP-1234 polyadenyl 99.1 1.6E-10 3.4E-15 124.8 10.5 82 299-380 282-364 (562)
32 KOG0114 Predicted RNA-binding 99.1 2.5E-10 5.3E-15 91.8 8.5 77 301-379 17-94 (124)
33 TIGR01648 hnRNP-R-Q heterogene 99.1 2.5E-10 5.5E-15 121.1 10.8 76 301-376 57-134 (578)
34 TIGR01628 PABP-1234 polyadenyl 99.1 2.3E-10 5E-15 123.5 10.2 77 303-379 1-79 (562)
35 KOG0130 RNA-binding protein RB 99.1 2.2E-10 4.8E-15 96.2 7.5 84 298-381 68-153 (170)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.1 9E-10 1.9E-14 117.4 14.1 80 301-380 294-375 (509)
37 TIGR01622 SF-CC1 splicing fact 99.1 4.8E-10 1E-14 117.9 10.3 78 302-379 186-265 (457)
38 TIGR01622 SF-CC1 splicing fact 99.1 5.2E-10 1.1E-14 117.7 10.5 80 299-378 86-166 (457)
39 cd00590 RRM RRM (RNA recogniti 99.1 9.4E-10 2E-14 83.9 9.3 73 304-376 1-74 (74)
40 smart00360 RRM RNA recognition 99.1 6.5E-10 1.4E-14 84.0 8.3 69 307-375 1-71 (71)
41 KOG0148 Apoptosis-promoting RN 99.1 1E-09 2.2E-14 102.6 11.0 78 299-381 161-239 (321)
42 KOG0111 Cyclophilin-type pepti 99.0 1.2E-10 2.6E-15 105.4 3.9 80 301-380 9-90 (298)
43 KOG0145 RNA-binding protein EL 99.0 1.4E-09 3E-14 101.0 10.3 83 299-381 38-122 (360)
44 COG0724 RNA-binding proteins ( 99.0 9.9E-10 2.2E-14 105.7 9.7 77 302-378 115-193 (306)
45 KOG0117 Heterogeneous nuclear 99.0 1.7E-09 3.6E-14 107.5 9.4 79 300-378 81-162 (506)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 1.8E-09 3.9E-14 114.2 10.3 78 299-380 272-351 (481)
47 KOG0148 Apoptosis-promoting RN 99.0 1.5E-09 3.2E-14 101.5 8.4 80 302-381 62-143 (321)
48 KOG0127 Nucleolar protein fibr 99.0 1.4E-09 3.1E-14 110.2 8.7 81 299-379 289-377 (678)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2.3E-09 5E-14 113.4 9.9 73 302-379 2-77 (481)
50 KOG0109 RNA-binding protein LA 98.9 1.1E-09 2.4E-14 103.2 5.7 71 303-380 3-74 (346)
51 KOG0108 mRNA cleavage and poly 98.9 2.1E-09 4.6E-14 110.0 8.1 80 303-382 19-100 (435)
52 KOG0126 Predicted RNA-binding 98.9 1.9E-10 4E-15 101.6 -0.4 84 294-377 27-112 (219)
53 KOG0127 Nucleolar protein fibr 98.9 3E-09 6.5E-14 107.9 7.8 81 302-382 117-198 (678)
54 KOG0124 Polypyrimidine tract-b 98.9 1.3E-09 2.8E-14 105.5 4.2 76 301-376 112-189 (544)
55 KOG0144 RNA-binding protein CU 98.9 8.6E-09 1.9E-13 102.0 10.0 84 296-379 28-116 (510)
56 KOG0144 RNA-binding protein CU 98.9 2.3E-09 5.1E-14 106.0 5.6 83 300-382 122-208 (510)
57 KOG0131 Splicing factor 3b, su 98.9 2.9E-09 6.3E-14 94.2 5.6 79 300-378 7-87 (203)
58 smart00361 RRM_1 RNA recogniti 98.8 2.7E-08 6E-13 76.6 7.4 60 316-375 2-70 (70)
59 KOG0415 Predicted peptidyl pro 98.7 1.8E-08 4E-13 97.3 6.2 79 302-380 239-319 (479)
60 PF13893 RRM_5: RNA recognitio 98.7 3.9E-08 8.4E-13 72.1 6.3 55 319-377 1-56 (56)
61 KOG0145 RNA-binding protein EL 98.7 5.7E-08 1.2E-12 90.4 8.7 80 301-380 277-358 (360)
62 TIGR01642 U2AF_lg U2 snRNP aux 98.7 1.2E-07 2.6E-12 101.1 12.6 74 299-377 172-257 (509)
63 KOG4205 RNA-binding protein mu 98.7 1.5E-08 3.2E-13 99.6 4.9 80 301-380 5-85 (311)
64 KOG4205 RNA-binding protein mu 98.7 1.2E-07 2.5E-12 93.3 11.1 81 301-381 96-177 (311)
65 KOG4661 Hsp27-ERE-TATA-binding 98.7 1.2E-07 2.6E-12 96.6 10.5 81 299-379 402-484 (940)
66 KOG0109 RNA-binding protein LA 98.6 4E-08 8.7E-13 92.9 6.2 78 301-385 77-155 (346)
67 KOG0123 Polyadenylate-binding 98.6 7.3E-08 1.6E-12 97.8 8.5 74 305-380 79-153 (369)
68 KOG0147 Transcriptional coacti 98.6 3E-08 6.5E-13 101.2 5.0 78 302-379 278-357 (549)
69 KOG0110 RNA-binding protein (R 98.6 8.8E-08 1.9E-12 100.4 7.6 77 302-378 515-596 (725)
70 KOG0153 Predicted RNA-binding 98.6 1.5E-07 3.2E-12 91.2 8.1 76 299-379 225-302 (377)
71 KOG4206 Spliceosomal protein s 98.6 2E-07 4.4E-12 85.7 8.4 79 302-382 9-92 (221)
72 KOG4209 Splicing factor RNPS1, 98.6 1.5E-07 3.2E-12 89.3 7.7 84 298-381 97-181 (231)
73 KOG0110 RNA-binding protein (R 98.6 4.7E-08 1E-12 102.4 4.4 79 301-379 612-692 (725)
74 KOG0131 Splicing factor 3b, su 98.5 1.5E-07 3.2E-12 83.5 5.9 80 302-381 96-178 (203)
75 KOG0533 RRM motif-containing p 98.4 2.6E-06 5.7E-11 80.8 12.7 83 299-381 80-163 (243)
76 KOG4212 RNA-binding protein hn 98.4 3.4E-07 7.3E-12 90.9 6.8 74 299-376 533-607 (608)
77 cd00531 NTF2_like Nuclear tran 98.4 3.7E-06 8.1E-11 70.3 12.1 115 17-132 2-123 (124)
78 KOG0132 RNA polymerase II C-te 98.4 5.5E-07 1.2E-11 95.2 7.4 74 302-380 421-495 (894)
79 KOG1457 RNA binding protein (c 98.4 4E-06 8.7E-11 76.7 11.9 84 300-383 32-121 (284)
80 KOG0106 Alternative splicing f 98.4 3.8E-07 8.2E-12 84.6 5.4 72 303-381 2-74 (216)
81 KOG0146 RNA-binding protein ET 98.4 1E-06 2.2E-11 82.5 7.3 80 301-380 18-101 (371)
82 KOG0124 Polypyrimidine tract-b 98.3 1E-06 2.2E-11 85.8 6.9 81 299-379 207-289 (544)
83 KOG4211 Splicing factor hnRNP- 98.3 5.4E-06 1.2E-10 84.0 10.8 76 302-378 103-180 (510)
84 KOG4208 Nucleolar RNA-binding 98.2 4.1E-06 8.9E-11 76.0 7.1 80 300-379 47-129 (214)
85 KOG1548 Transcription elongati 98.2 5.2E-06 1.1E-10 80.6 8.1 82 300-381 132-222 (382)
86 KOG0123 Polyadenylate-binding 98.1 6.2E-06 1.4E-10 83.8 7.9 73 303-380 2-75 (369)
87 KOG1995 Conserved Zn-finger pr 98.1 1.5E-05 3.3E-10 78.1 10.0 84 299-382 63-156 (351)
88 KOG0921 Dosage compensation co 98.1 1.1E-05 2.4E-10 87.2 8.8 7 416-422 1229-1235(1282)
89 KOG4454 RNA binding protein (R 98.0 2.5E-06 5.3E-11 77.9 2.6 78 302-380 9-87 (267)
90 PF10429 Mtr2: Nuclear pore RN 98.0 1.1E-05 2.3E-10 70.9 5.6 99 14-118 5-109 (166)
91 KOG0151 Predicted splicing reg 97.9 1.3E-05 2.8E-10 84.3 6.2 81 299-379 171-256 (877)
92 KOG4660 Protein Mei2, essentia 97.8 1.8E-05 3.8E-10 81.5 5.0 70 300-373 73-143 (549)
93 KOG0226 RNA-binding proteins [ 97.7 4.5E-05 9.7E-10 71.4 5.4 79 299-377 187-267 (290)
94 PF04059 RRM_2: RNA recognitio 97.7 0.00027 5.8E-09 57.7 8.7 77 303-379 2-86 (97)
95 KOG0921 Dosage compensation co 97.6 0.0002 4.4E-09 77.7 8.2 6 425-430 1232-1237(1282)
96 KOG4211 Splicing factor hnRNP- 97.5 0.0013 2.7E-08 67.2 12.7 74 302-376 281-354 (510)
97 KOG1457 RNA binding protein (c 97.5 9.2E-05 2E-09 68.0 3.8 64 301-367 209-273 (284)
98 KOG4849 mRNA cleavage factor I 97.5 0.00027 5.8E-09 68.8 6.8 75 301-375 79-157 (498)
99 KOG4210 Nuclear localization s 97.5 0.00013 2.7E-09 71.7 4.6 79 303-381 185-265 (285)
100 PF08777 RRM_3: RNA binding mo 97.4 0.00022 4.8E-09 59.4 5.0 69 302-375 1-75 (105)
101 PF15008 DUF4518: Domain of un 97.4 0.0013 2.8E-08 63.1 10.4 126 9-134 124-260 (262)
102 PF11608 Limkain-b1: Limkain b 97.3 0.0012 2.5E-08 51.8 7.2 67 303-378 3-75 (90)
103 KOG1456 Heterogeneous nuclear 97.2 0.011 2.5E-07 58.3 14.9 70 307-380 127-199 (494)
104 KOG3763 mRNA export factor TAP 97.2 0.0024 5.2E-08 66.6 10.4 122 10-135 335-498 (585)
105 PRK11634 ATP-dependent RNA hel 97.1 0.0038 8.2E-08 68.3 12.0 75 302-379 486-562 (629)
106 KOG0120 Splicing factor U2AF, 97.1 0.00051 1.1E-08 71.5 4.5 80 300-379 287-368 (500)
107 KOG0147 Transcriptional coacti 97.0 0.0004 8.7E-09 71.6 2.7 80 298-377 175-255 (549)
108 KOG0106 Alternative splicing f 97.0 0.00051 1.1E-08 64.0 2.8 67 301-374 98-165 (216)
109 KOG1190 Polypyrimidine tract-b 96.9 0.0034 7.4E-08 62.7 7.9 75 302-380 297-373 (492)
110 KOG2202 U2 snRNP splicing fact 96.6 0.01 2.3E-07 56.0 8.7 59 318-378 84-146 (260)
111 KOG4206 Spliceosomal protein s 96.4 0.012 2.5E-07 54.7 7.6 73 302-378 146-220 (221)
112 TIGR02246 conserved hypothetic 96.4 0.071 1.5E-06 45.1 12.1 109 16-130 6-123 (128)
113 KOG0105 Alternative splicing f 96.4 0.024 5.2E-07 51.0 9.1 61 301-367 114-175 (241)
114 PF13474 SnoaL_3: SnoaL-like d 96.4 0.023 4.9E-07 47.5 8.8 108 17-129 2-115 (121)
115 COG5175 MOT2 Transcriptional r 96.3 0.0073 1.6E-07 58.9 6.0 79 301-379 113-202 (480)
116 KOG0129 Predicted RNA-binding 96.3 0.012 2.7E-07 60.6 7.8 65 299-363 367-433 (520)
117 KOG0129 Predicted RNA-binding 96.2 0.011 2.5E-07 60.8 6.6 62 301-363 258-326 (520)
118 PF14605 Nup35_RRM_2: Nup53/35 95.7 0.029 6.4E-07 40.5 5.3 52 303-360 2-53 (53)
119 KOG4307 RNA binding protein RB 95.7 0.03 6.4E-07 59.6 7.3 75 301-376 865-943 (944)
120 KOG3262 H/ACA small nucleolar 95.6 0.064 1.4E-06 48.1 8.3 23 315-337 87-109 (215)
121 KOG1855 Predicted RNA-binding 95.6 0.13 2.8E-06 52.1 11.2 65 299-363 228-306 (484)
122 KOG0120 Splicing factor U2AF, 95.6 0.025 5.5E-07 59.1 6.3 61 318-378 425-490 (500)
123 PF14534 DUF4440: Domain of un 95.5 0.13 2.8E-06 41.6 9.3 101 18-125 3-107 (107)
124 KOG1365 RNA-binding protein Fu 95.4 0.026 5.6E-07 56.1 5.4 78 302-379 280-361 (508)
125 PF08952 DUF1866: Domain of un 95.2 0.079 1.7E-06 46.3 7.1 56 318-380 52-107 (146)
126 KOG1365 RNA-binding protein Fu 95.0 0.022 4.8E-07 56.6 3.8 75 303-377 162-240 (508)
127 PF05172 Nup35_RRM: Nup53/35/4 95.0 0.073 1.6E-06 43.8 6.0 75 302-377 6-89 (100)
128 KOG1456 Heterogeneous nuclear 94.8 0.32 6.9E-06 48.4 10.9 78 299-380 284-363 (494)
129 KOG0112 Large RNA-binding prot 94.7 0.036 7.9E-07 60.7 4.8 75 300-379 453-530 (975)
130 KOG1190 Polypyrimidine tract-b 94.7 0.075 1.6E-06 53.4 6.6 78 299-379 411-490 (492)
131 KOG2314 Translation initiation 94.6 0.14 3.1E-06 53.4 8.4 75 301-375 57-139 (698)
132 PF12893 Lumazine_bd_2: Putati 94.5 0.43 9.3E-06 40.1 10.1 104 17-131 7-116 (116)
133 KOG1548 Transcription elongati 94.5 0.1 2.3E-06 51.4 6.9 76 300-378 263-350 (382)
134 KOG0128 RNA-binding protein SA 94.3 0.0055 1.2E-07 66.5 -2.4 72 300-371 665-738 (881)
135 PF10309 DUF2414: Protein of u 94.3 0.25 5.5E-06 36.7 6.9 54 302-363 5-62 (62)
136 KOG3152 TBP-binding protein, a 94.1 0.029 6.2E-07 53.0 2.1 71 301-371 73-157 (278)
137 KOG0115 RNA-binding protein p5 94.1 0.052 1.1E-06 51.4 3.7 76 303-378 32-112 (275)
138 PF12680 SnoaL_2: SnoaL-like d 94.1 0.14 3E-06 40.8 5.9 72 20-99 1-75 (102)
139 KOG2416 Acinus (induces apopto 93.8 0.065 1.4E-06 56.2 4.0 77 298-379 440-521 (718)
140 KOG2253 U1 snRNP complex, subu 93.7 0.093 2E-06 55.9 5.2 68 301-376 39-107 (668)
141 KOG0128 RNA-binding protein SA 93.7 0.033 7.1E-07 60.7 1.8 78 302-379 736-814 (881)
142 KOG2193 IGF-II mRNA-binding pr 93.7 0.069 1.5E-06 53.8 3.9 73 303-380 2-76 (584)
143 KOG4307 RNA binding protein RB 93.6 0.092 2E-06 56.0 4.8 78 298-375 430-509 (944)
144 PRK10590 ATP-dependent RNA hel 92.8 1.1 2.5E-05 47.1 11.8 16 343-358 344-359 (456)
145 cd00781 ketosteroid_isomerase 91.9 1.4 3.1E-05 36.8 9.3 96 17-116 6-103 (122)
146 KOG4676 Splicing factor, argin 91.7 0.23 4.9E-06 49.8 4.5 73 303-375 8-84 (479)
147 KOG0112 Large RNA-binding prot 91.5 0.048 1E-06 59.8 -0.4 69 299-367 369-438 (975)
148 KOG1996 mRNA splicing factor [ 91.4 0.5 1.1E-05 45.6 6.3 60 316-375 300-362 (378)
149 PF08675 RNA_bind: RNA binding 91.1 0.62 1.4E-05 36.7 5.4 53 303-363 10-62 (87)
150 KOG2591 c-Mpl binding protein, 90.6 0.38 8.3E-06 50.3 5.0 69 301-375 174-247 (684)
151 PF15023 DUF4523: Protein of u 88.7 1.9 4.1E-05 37.5 7.0 72 299-376 83-158 (166)
152 PF03467 Smg4_UPF3: Smg-4/UPF3 88.0 0.84 1.8E-05 41.7 4.8 69 299-367 4-80 (176)
153 KOG0116 RasGAP SH3 binding pro 87.5 0.95 2.1E-05 46.9 5.3 12 352-363 301-312 (419)
154 TIGR02096 conserved hypothetic 86.9 2.2 4.8E-05 35.9 6.7 60 19-81 3-65 (129)
155 KOG2068 MOT2 transcription fac 86.8 0.26 5.7E-06 48.6 0.9 78 302-379 77-162 (327)
156 KOG4285 Mitotic phosphoprotein 86.5 3.2 7E-05 40.5 8.0 68 303-376 198-266 (350)
157 PF05918 API5: Apoptosis inhib 84.5 0.3 6.5E-06 52.2 0.0 15 13-27 39-53 (556)
158 PF03880 DbpA: DbpA RNA bindin 83.9 1.8 3.9E-05 33.4 4.1 68 304-377 2-74 (74)
159 KOG2135 Proteins containing th 83.3 0.7 1.5E-05 47.5 2.0 74 302-380 372-446 (526)
160 PRK11634 ATP-dependent RNA hel 81.7 2.7 5.9E-05 46.2 6.0 12 352-363 500-511 (629)
161 PF03284 PHZA_PHZB: Phenazine 79.4 17 0.00037 31.8 8.7 103 12-116 16-128 (162)
162 PF11767 SET_assoc: Histone ly 79.0 10 0.00022 28.7 6.5 54 313-374 11-65 (66)
163 KOG4210 Nuclear localization s 77.8 1.1 2.5E-05 44.1 1.4 76 301-376 87-164 (285)
164 PRK06958 single-stranded DNA-b 76.2 5.9 0.00013 36.3 5.5 10 303-312 6-15 (182)
165 KOG4410 5-formyltetrahydrofola 75.9 11 0.00024 36.5 7.4 52 299-354 327-378 (396)
166 PF12287 Caprin-1_C: Cytoplasm 75.5 7.1 0.00015 38.3 6.1 15 444-458 302-316 (316)
167 COG4319 Ketosteroid isomerase 74.2 17 0.00037 31.6 7.4 94 29-128 26-127 (137)
168 PF07576 BRAP2: BRCA1-associat 70.8 42 0.0009 28.1 8.9 66 302-369 13-81 (110)
169 PF13577 SnoaL_4: SnoaL-like d 66.9 32 0.0007 28.4 7.8 66 17-84 10-78 (127)
170 PF04847 Calcipressin: Calcipr 65.7 21 0.00045 32.8 6.6 61 315-380 8-71 (184)
171 PF08332 CaMKII_AD: Calcium/ca 64.8 91 0.002 26.8 12.1 111 13-127 3-121 (128)
172 PF15601 Imm42: Immunity prote 63.2 4 8.7E-05 35.3 1.4 67 18-89 16-92 (134)
173 COG4907 Predicted membrane pro 60.9 15 0.00033 38.0 5.2 37 92-132 104-140 (595)
174 KOG4660 Protein Mei2, essentia 56.6 16 0.00035 38.7 4.7 78 302-379 388-472 (549)
175 PRK04537 ATP-dependent RNA hel 56.5 1.5E+02 0.0033 32.2 12.5 11 319-329 338-348 (572)
176 PF07366 SnoaL: SnoaL-like pol 56.5 68 0.0015 26.7 7.9 59 22-84 6-67 (126)
177 KOG4574 RNA-binding protein (c 54.0 9.1 0.0002 42.5 2.4 75 302-381 298-375 (1007)
178 PF15513 DUF4651: Domain of un 53.9 26 0.00057 26.0 4.1 21 317-337 9-29 (62)
179 PRK11901 hypothetical protein; 53.1 1.7E+02 0.0037 29.3 10.9 65 300-368 243-309 (327)
180 PF12870 Lumazine_bd: Lumazine 52.2 48 0.001 26.6 6.2 99 9-125 6-110 (111)
181 cd06404 PB1_aPKC PB1 domain is 51.8 16 0.00034 28.9 2.8 47 24-70 22-69 (83)
182 KOG2044 5'-3' exonuclease HKE1 49.7 64 0.0014 36.0 7.9 29 57-85 203-236 (931)
183 smart00593 RUN domain involved 48.2 16 0.00034 27.2 2.3 44 18-70 12-55 (64)
184 PF12343 DEADboxA: Cold shock 47.0 55 0.0012 23.9 4.7 13 452-464 41-53 (63)
185 PF03468 XS: XS domain; Inter 43.4 46 0.001 28.1 4.7 46 315-362 30-76 (116)
186 KOG4676 Splicing factor, argin 41.8 4.9 0.00011 40.6 -1.6 64 302-368 151-214 (479)
187 COG4907 Predicted membrane pro 41.3 24 0.00051 36.7 3.0 13 122-134 104-116 (595)
188 KOG2044 5'-3' exonuclease HKE1 40.9 82 0.0018 35.2 7.1 24 301-326 666-689 (931)
189 KOG2318 Uncharacterized conser 40.8 1.1E+02 0.0023 33.0 7.7 75 301-375 173-301 (650)
190 PF12642 TpcC: Conjugative tra 40.3 78 0.0017 29.8 6.4 89 14-126 140-231 (232)
191 PF02759 RUN: RUN domain; Int 40.3 13 0.00028 31.5 0.9 37 12-48 65-110 (133)
192 COG1512 Beta-propeller domains 39.6 50 0.0011 32.3 4.8 12 59-70 48-59 (271)
193 KOG4483 Uncharacterized conser 38.3 58 0.0013 33.2 5.1 56 302-362 391-446 (528)
194 smart00596 PRE_C2HC PRE_C2HC d 36.1 66 0.0014 24.5 3.9 60 317-379 2-64 (69)
195 PRK08241 RNA polymerase factor 36.1 2.3E+02 0.005 28.2 9.4 54 13-69 213-267 (339)
196 PF00403 HMA: Heavy-metal-asso 36.0 1.3E+02 0.0029 21.5 5.7 57 304-365 1-61 (62)
197 COG3631 Ketosteroid isomerase- 34.3 2.6E+02 0.0056 24.1 8.0 69 16-84 6-78 (133)
198 KOG0804 Cytoplasmic Zn-finger 33.2 1.8E+02 0.0039 30.4 7.7 66 302-369 74-142 (493)
199 PF07530 PRE_C2HC: Associated 31.3 76 0.0017 24.0 3.7 61 317-380 2-65 (68)
200 KOG1924 RhoA GTPase effector D 30.3 2.4E+02 0.0052 31.7 8.4 14 22-35 310-323 (1102)
201 cd06402 PB1_p62 The PB1 domain 30.2 1E+02 0.0022 24.6 4.4 30 41-70 47-76 (87)
202 COG5073 VID24 Vacuolar import 29.9 20 0.00044 33.9 0.4 74 19-103 53-126 (272)
203 PRK10905 cell division protein 29.6 4.9E+02 0.011 26.1 9.9 64 300-368 245-311 (328)
204 PF08863 YolD: YolD-like prote 28.4 1.3E+02 0.0029 23.5 5.0 72 31-117 5-76 (92)
205 TIGR02960 SigX5 RNA polymerase 27.6 2.9E+02 0.0064 27.2 8.4 52 15-69 205-257 (324)
206 KOG0132 RNA polymerase II C-te 27.6 1E+02 0.0022 34.3 5.2 12 58-69 434-445 (894)
207 PF11533 DUF3225: Protein of u 26.9 4.1E+02 0.0088 22.8 11.1 114 12-133 9-123 (125)
208 PF05941 Chordopox_A20R: Chord 26.6 1.9E+02 0.0041 29.0 6.5 99 17-129 173-280 (334)
209 TIGR03636 L23_arch archaeal ri 26.1 2.8E+02 0.006 21.6 6.1 60 305-364 16-75 (77)
210 KOG2295 C2H2 Zn-finger protein 26.0 1.6E+02 0.0035 31.5 6.1 9 107-115 165-173 (648)
211 COG5353 Uncharacterized protei 25.8 2.9E+02 0.0063 24.4 6.7 56 302-357 87-156 (161)
212 PRK14548 50S ribosomal protein 25.6 2.6E+02 0.0057 22.1 6.0 56 309-364 27-82 (84)
213 PRK04537 ATP-dependent RNA hel 24.3 1.9E+02 0.004 31.6 6.7 7 318-324 340-346 (572)
214 KOG4454 RNA binding protein (R 23.4 20 0.00044 33.6 -0.8 68 300-367 78-150 (267)
215 KOG1924 RhoA GTPase effector D 20.9 4.3E+02 0.0093 29.9 8.2 14 122-135 417-430 (1102)
216 PF07292 NID: Nmi/IFP 35 domai 20.7 94 0.002 24.9 2.6 31 346-376 1-33 (88)
217 PF04459 DUF512: Protein of un 20.6 2.6E+02 0.0057 26.0 6.0 71 17-103 80-151 (204)
218 PF06851 DUF1247: Protein of u 20.4 33 0.00071 29.8 -0.1 42 18-72 93-134 (148)
219 COG2920 DsrC Dissimilatory sul 20.2 72 0.0015 26.2 1.8 16 17-32 49-64 (111)
No 1
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-64 Score=505.58 Aligned_cols=358 Identities=42% Similarity=0.648 Sum_probs=237.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEee
Q 012356 1 MAVQEGSPAPSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKT 80 (465)
Q Consensus 1 ma~~~~~~~~~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~ 80 (465)
|+++.....++++.||++||+|||++|++.|+.||+||.++|.|+|.|.||+|..++++++|+++|++|+|..|+++|.+
T Consensus 2 ~~~~~~~~~~~~~~vg~~Fv~qYY~~L~~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sld~~~~s~eI~t 81 (419)
T KOG0116|consen 2 DAQAMLSPVPTPQLVGNEFVRQYYNVLQNSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSLDYEVCSVEIST 81 (419)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHHhhChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeecCCCceeEEEEE
Confidence 34444456889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeCCCcEEEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEeeecccccccCCCCCCCCCCCCCCCCCCCC
Q 012356 81 ADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVEENESLENNSDSVVNETAPTANVTEAP 160 (465)
Q Consensus 81 ~d~q~s~~~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 160 (465)
||+|.|+++||||+|+|+|++++.+.|+|+|||||++|++ +|||+||||||||+.+..+..... +. ++
T Consensus 82 vdsQ~S~~~GvvI~VtG~lt~~~~~rRkF~QtFfLapq~~-~yfVlNDiFRfvde~~~~e~~~~~---vp--------~~ 149 (419)
T KOG0116|consen 82 VDSQASLEKGVVIMVTGYLTNKDGPRRKFSQTFFLAPQEK-GYFVLNDIFRFVDEEFEPEANTDE---VP--------EA 149 (419)
T ss_pred EehhhhccCCeEEEEEEEEEeCCCcceEEEEEEEEeecCC-ceEEEechhhhccccccccccccc---CC--------CC
Confidence 9999999999999999999999999999999999999999 999999999999988711111000 00 00
Q ss_pred CCCCCCC-CCCCCcCccccc-CCCCCC----CC-ccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012356 161 EPAHDQD-HIPADRAIVIEG-EDLDNG----PE-VCDPSDKEEGSVVEDEIVEPPSNSVQNEVHASVDSAPVAQGDAPEK 233 (465)
Q Consensus 161 ~~~~~~~-~~~~e~~~~~~~-~~~~~~----~~-~~~p~~~~~~~~~~e~~~e~~~~~~~~~~~~~~~~~~~~~~~~p~k 233 (465)
.+..... ..+...+..+.+ +..++. +. +..++......+..++.+++.+ .. ..+...+..++.+.| +
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~~~ee~v---~~--~~~~~~p~~~~~~~~-~ 223 (419)
T KOG0116|consen 150 NPAVVVSVEKASQLVEAVVESEPEPEPEPKAEDEVEVPEEATVEDEAKEKTKEELV---IQ--QTVSEAPAAPQGDAP-K 223 (419)
T ss_pred CcceeecccccccccccccccCCCCcccccccCceeccccccccccccccCchhhc---cc--ccccCCCcccccccc-c
Confidence 0000000 000000000000 000000 00 1111100000000000000000 00 001111112255777 9
Q ss_pred cchHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCEEEEcCC
Q 012356 234 KSYASIVKVMKGYNISSAAYVPARKARPTPPNADQQSPAMAKPAPVPEASALSSD---GAPENSNVNEEAEGCSIYVRNL 310 (465)
Q Consensus 234 ~s~As~~~~~~~~~~P~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lfV~nL 310 (465)
+|||+++..++....+......+... .+ +.++...+.+.....++.+. ...+..+........+|||+||
T Consensus 224 ~s~asv~~~~~~~~~~~~~~~~p~~~--~~-----~~~p~~~~~~~~~s~~~~p~~~~~~~n~~~~~~~~~~~~i~V~nl 296 (419)
T KOG0116|consen 224 KSFASVVKVLKKSAAVQQSKGSPPQI--QP-----QQQPSTKPQAERQSKPPSPVRESKSGNSNNQEPRADGLGIFVKNL 296 (419)
T ss_pred hhhhhhhhhcccccccceeccCCCcc--cc-----ccCCccCcchhhccCCCCccccccccccCCcceeecccceEeecC
Confidence 99999998776655442222222111 00 00000000000001111100 0112333444556677999999
Q ss_pred CCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeeccccCCC
Q 012356 311 AFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRANSRV 383 (465)
Q Consensus 311 p~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~~~r~ 383 (465)
|++++.++|+++|..||.|+...|.++... +..|||||+|.+.++++.||.+..+.|++++|.|+++++..++
T Consensus 297 P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~~g 370 (419)
T KOG0116|consen 297 PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGFRG 370 (419)
T ss_pred CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccccc
Confidence 999999999999999999999999888733 4449999999999999999999999999999999999987653
No 2
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-35 Score=235.67 Aligned_cols=121 Identities=30% Similarity=0.566 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCc
Q 012356 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKG 90 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~ 90 (465)
.++.||..||++||.+|+++|..|..||.+.|+|||+|. ..+|.++|.+||.+|||+.|++.|+++||||++++|
T Consensus 5 ~~e~v~~~FvqhYY~~FD~dR~ql~~lY~~~S~LTfEGq-----q~qG~~~IveKl~sLpFqkiqh~IttvD~QPt~~g~ 79 (126)
T KOG2104|consen 5 VYEAVAKAFVQHYYSLFDNDRSQLGALYIDTSMLTFEGQ-----QIQGKDAIVEKLTSLPFQKIQHSITTVDSQPTPDGG 79 (126)
T ss_pred cHHHHHHHHHHHHHHHhcCchhHhhhhhcccceeeEcch-----hhcchHHHHHHHhcCChhhhhceeeecccccCCCCc
Confidence 569999999999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred EEEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEeeeccc
Q 012356 91 VIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVEEN 136 (465)
Q Consensus 91 i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~~~~~ 136 (465)
|||+|+|+|+.++++.++|+|+|+|.+..+++|||.|||||+..++
T Consensus 80 ilv~V~G~Lk~dEd~~~~FsQvF~L~~n~~~~~~v~ndiFRLn~~n 125 (126)
T KOG2104|consen 80 ILVMVVGQLKLDEDPILRFSQVFLLKPNIQGSYYVFNDIFRLNLHN 125 (126)
T ss_pred EEEEEeeeeeeccCCccceeeEEEEeEcCCCCEEEEeeeEEEeccc
Confidence 9999999999999999999999999987656999999999997654
No 3
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=99.98 E-value=5e-32 Score=232.23 Aligned_cols=118 Identities=47% Similarity=0.753 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecC-CCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCC
Q 012356 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPD-SNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEK 89 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~-~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~ 89 (465)
++++||++||++||++|+++|+.|++||+++|+|+|.+ . .+.|.++|.++|++|++..++++|.++|||++.++
T Consensus 1 ~~~~v~~~Fv~~YY~~l~~~~~~L~~fY~~~s~~~~~~~~-----~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~ 75 (119)
T cd00780 1 SAEDVAKAFVQQYYSIFDNNREGLHRLYGDTSMLSREGMK-----QVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSG 75 (119)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHhhcCCCcEEEECCce-----EecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCC
Confidence 47899999999999999999999999999999999999 5 68899999999999999889999999999999999
Q ss_pred cEEEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEeeec
Q 012356 90 GVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (465)
Q Consensus 90 ~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~~~ 134 (465)
+|||+|+|+|+.++...++|+|+|+|.++++ +|||+||||||++
T Consensus 76 ~ili~V~G~~~~~~~~~~~F~q~F~L~~~~~-~~~I~nD~fr~~~ 119 (119)
T cd00780 76 GVIVMVTGSLKLDEQPPRKFSQTFVLAPQNG-GYFVLNDIFRFVD 119 (119)
T ss_pred CEEEEEEEEEEECCCCceeEeEEEEEEecCC-eEEEEeeEEEecC
Confidence 9999999999999889999999999999996 9999999999985
No 4
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.93 E-value=8.6e-26 Score=193.02 Aligned_cols=113 Identities=36% Similarity=0.658 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhhcc-Ccchhcccc-cCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeee--eeCCCc
Q 012356 15 VGNAFVEQYYHILHQ-SPGLVHRFY-QDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQ--DSYEKG 90 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~~-~p~~l~~fY-~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q--~s~~~~ 90 (465)
||+.||++||++|++ +|+.|++|| .+.|.++|.+. ..+.|.++|.++|.+|+...+++.|.++||| ++.+++
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~----~~~~G~~~I~~~~~~l~~~~~~~~i~~~d~qp~~~~~~~ 76 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGN----RPVVGREAIQEFFQSLPATGVQHRITSVDCQPSPSSDGS 76 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTE----CEEESHHHHHHHHHHHTTSSEEEEEEEEEEEEEEECCSE
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCc----hhhhhHHHHHHHHhcCCCcccEEEecccccccccccCCc
Confidence 799999999999999 999999999 67788999876 2589999999999999998889999999999 568899
Q ss_pred EEEEEEEEEEcCCCC-cccEEEEEEeeecCCCcEEEEcceEee
Q 012356 91 VIVLVTGCLTGKDNV-KKKFTQTFFLAPQDKGGYFVLNDVFRF 132 (465)
Q Consensus 91 i~v~V~G~~~~~~~~-~~~F~q~F~L~~~~~~~y~v~nDifr~ 132 (465)
|+|+|+|.++..+.+ .|+|+|+|+|.++++ +|+|.||||||
T Consensus 77 i~i~v~G~~~~~~~~~~~~F~q~FvL~~~~~-~~~I~nd~~r~ 118 (118)
T PF02136_consen 77 ILITVTGQFKEDDNPNPRRFSQTFVLVPQNN-GYFIANDIFRF 118 (118)
T ss_dssp EEEEEEEEEEETTSEEEEEEEEEEEEEEETT-EEEEEEEEEEE
T ss_pred EEEEEEeEEEecCCCcccEEEEEEEEEEcCC-EEEEEeeEEEC
Confidence 999999999998876 699999999999996 99999999998
No 5
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=99.89 E-value=1.1e-23 Score=173.13 Aligned_cols=117 Identities=26% Similarity=0.405 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCC-
Q 012356 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEK- 89 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~- 89 (465)
++..-+.+||+.||..|+++|..|.+||.++|+|+|+|+ .+.|++.|.+.+..||.+ ++.|.++||||.++.
T Consensus 11 s~cr~A~eFv~~YY~smD~rR~~i~rlY~~~atlvWNGn-----~v~g~esls~ff~~LPsS--~~qi~~lD~Qpv~dqa 83 (139)
T KOG4353|consen 11 SACRAAEEFVNVYYSSMDKRRRGIGRLYLDNATLVWNGN-----PVSGTESLSEFFNMLPSS--EFQINDLDCQPVHDQA 83 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhccceEEEcCC-----cchhHHHHHHHHHhCCCc--cccccccccccchhhc
Confidence 456679999999999999999999999999999999999 799999999999999955 899999999997653
Q ss_pred -----cEEEEEEEEEEcCCCCcccEEEEEEeeecCCCcEE----EEcceEeeecc
Q 012356 90 -----GVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYF----VLNDVFRFVEE 135 (465)
Q Consensus 90 -----~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~----v~nDifr~~~~ 135 (465)
+|||+|+|.++.+++..|.|.|||+|..++. .|- |.+|||||+|-
T Consensus 84 t~~q~~vLvvvsGtVkFdG~k~r~F~qt~ll~~e~~-~~k~~~~v~Sd~fr~~d~ 137 (139)
T KOG4353|consen 84 TGSQTTVLVVVSGTVKFDGNKQRVFNQTFLLTAEDP-PFKTVWKVASDCFRFQDW 137 (139)
T ss_pred ccccceEEEEEeeeEEEcCCccccccceeEEeecCC-ccchhhhhhhhhhhhhhc
Confidence 4999999999999999999999999999876 555 99999999874
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=7.3e-18 Score=148.77 Aligned_cols=81 Identities=22% Similarity=0.408 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+||++++++++|+++|++||.|.++.|..+..+ ++++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4689999999999999999999999999999999888776 88999999999999999999988 999999999999987
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
.+.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 654
No 7
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=6.2e-15 Score=128.95 Aligned_cols=82 Identities=30% Similarity=0.407 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
.-.++|||+||+..+++.||+.+|..||.|.. |++.. ...|||||+|+++.+|++|+..| +..|+|..|+||++.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs--vWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRS--VWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCccee--EEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 34799999999999999999999999999998 55554 45799999999999999999999 999999999999998
Q ss_pred ccCCCCC
Q 012356 379 ANSRVGG 385 (465)
Q Consensus 379 ~~~r~~~ 385 (465)
...+.+.
T Consensus 84 G~~r~~r 90 (195)
T KOG0107|consen 84 GRPRGSR 90 (195)
T ss_pred CCccccc
Confidence 8776443
No 8
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=2e-15 Score=132.80 Aligned_cols=76 Identities=26% Similarity=0.347 Sum_probs=68.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.++|||+|||.++.+.+|+++|.+||.|..|.+ .......+||||+|+++.+|+.||... +..++|++|+||+.+.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieL--K~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIEL--KNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEe--ccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 589999999999999999999999999998544 433366899999999999999999999 9999999999999864
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=1.2e-14 Score=146.14 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=71.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccc--cceEEeec
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGD--RPADVEAK 377 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g--~~i~Ve~~ 377 (465)
.++|||+|||+++|+++|+++|++||.|+.+.|..++.+ +.++||||+|.+.++|++||+.| +..|.+ +.|+|.++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 468999999999999999999999999999988887755 78899999999999999999999 887765 67888888
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+...+
T Consensus 273 ~~~~~ 277 (346)
T TIGR01659 273 EEHGK 277 (346)
T ss_pred Ccccc
Confidence 76543
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=1.4e-13 Score=145.56 Aligned_cols=74 Identities=24% Similarity=0.332 Sum_probs=67.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcc--CCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIF--GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
.++|||+||++++++++|+++|++| |.|++|.+. ++||||+|.+.++|++||+.+ +.+|+|+.|+|++++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4789999999999999999999999 999986543 469999999999999999999 999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
+...
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 8644
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.5e-14 Score=118.82 Aligned_cols=80 Identities=26% Similarity=0.425 Sum_probs=74.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
..+++|||+||++-++|+.|.++|+++|.|+.|-+-+++.+ ...|||||+|-+.++|+.||+.+ +..++.+.|+|++.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45799999999999999999999999999999888888888 78999999999999999999999 99999999999976
Q ss_pred cc
Q 012356 378 RA 379 (465)
Q Consensus 378 r~ 379 (465)
-.
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 53
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.50 E-value=4.9e-13 Score=134.51 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=76.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEE
Q 012356 297 NEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADV 374 (465)
Q Consensus 297 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~V 374 (465)
......++|||+|||+++|+++|+++|+.||.|+.|+|..+..+ ++++||||+|.+.++|++||+.| ++.|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34556899999999999999999999999999999999888766 88999999999999999999999 99999999999
Q ss_pred eeccc
Q 012356 375 EAKRA 379 (465)
Q Consensus 375 e~~r~ 379 (465)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 88764
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=9.5e-13 Score=133.55 Aligned_cols=82 Identities=24% Similarity=0.319 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
..++.|||+|||+++++++|+++|++||.|..++|..+..+ .++|||||+|.+.++|.+||..| |..|+||.|+|+++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 44678999999999999999999999999999999988756 89999999999999999999999 99999999999998
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7654
No 14
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.41 E-value=6.8e-13 Score=101.63 Aligned_cols=69 Identities=32% Similarity=0.422 Sum_probs=63.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceE
Q 012356 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPAD 373 (465)
Q Consensus 305 lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~ 373 (465)
|||+|||.++|+++|+++|++||.|..+.+..+.....++||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999988877644478899999999999999999988 9999999875
No 15
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=3.5e-13 Score=123.51 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
+..-++|||++|+|.++.++|+++|++||+|.+..|+.|+.+ ++|||+||+|.|.++|.+|++...-.|+||+.++.++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 344689999999999999999999999999999999999988 9999999999999999999998888899999988876
Q ss_pred c
Q 012356 378 R 378 (465)
Q Consensus 378 r 378 (465)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 16
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=4.6e-12 Score=119.59 Aligned_cols=82 Identities=21% Similarity=0.409 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
..-++|||+-|+++++|..|+..|+.||.|+.|.|+.+..+ +++|||||+|++..++..|.+.. +++|+|+.|.|+.-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45799999999999999999999999999999888888767 89999999999999999999999 99999999999988
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
+.+.
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 7653
No 17
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=1.8e-12 Score=123.67 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|+|.|||+...+.||+.+|.+||.|.+|.|+.... .+|||+||+|++.++|++|-++| +..|.||+|.|..+.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3458999999999999999999999999999988876544 58999999999999999999999 999999999999876
Q ss_pred c
Q 012356 379 A 379 (465)
Q Consensus 379 ~ 379 (465)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 5
No 18
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.37 E-value=2e-12 Score=131.14 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=74.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.++|||+|||.++++++|+++|++||.|..|+|..++.+ +++|||||+|.+.++|++||+.+ +..|.|+.|+|+++++
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 589999999999999999999999999999999888766 78999999999999999999999 9999999999998876
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
..
T Consensus 83 ~~ 84 (352)
T TIGR01661 83 SS 84 (352)
T ss_pred cc
Confidence 53
No 19
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=8.8e-12 Score=114.76 Aligned_cols=85 Identities=24% Similarity=0.330 Sum_probs=79.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceE
Q 012356 296 VNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPAD 373 (465)
Q Consensus 296 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~ 373 (465)
.....+..+|-|.||+.++++++|++||..||.|.++.|..++.+ .++|||||.|.+.++|.+||+.| |+-++.-.|+
T Consensus 183 ~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 183 MRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred cccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 334557899999999999999999999999999999999998888 89999999999999999999999 9999999999
Q ss_pred Eeecccc
Q 012356 374 VEAKRAN 380 (465)
Q Consensus 374 Ve~~r~~ 380 (465)
||+++|+
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999985
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.32 E-value=6.7e-12 Score=118.90 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=69.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRAN 380 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~~ 380 (465)
.++|||+||++.+|+++|+++|+.||.|.+|.|..+.. .++||||+|.+.++++.||...+..|+|+.|+|..++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 58999999999999999999999999999988876553 478999999999999999974499999999999988743
No 21
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.29 E-value=8.9e-12 Score=95.87 Aligned_cols=69 Identities=30% Similarity=0.454 Sum_probs=61.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceE
Q 012356 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPAD 373 (465)
Q Consensus 305 lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~ 373 (465)
|||+|||+++++++|+++|+.||.|..+.+...++...+++|||+|.+.++|++|++.+ +..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999988777655577899999999999999999999 6999999875
No 22
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.29 E-value=1.1e-11 Score=111.25 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|-|-||.+.++.++|+.+|++||.|-+|.|..+..+ .++|||||-|.+..+|++|+++| +.+|+|+.|.|..+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34689999999999999999999999999999989888877 89999999999999999999999 99999999999988
Q ss_pred cc
Q 012356 378 RA 379 (465)
Q Consensus 378 r~ 379 (465)
+=
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 63
No 23
>PLN03213 repressor of silencing 3; Provisional
Probab=99.26 E-value=1.8e-11 Score=122.25 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCCh--HHHHHHHHhC-CCcccccceEEe
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP--GSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~--~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
...+.+||||||++.+++++|+.+|..||.|+.|.|. +. ..||||||+|.+. .++.+||..| +..++|+.|+|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RE-TGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RT-KGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cc-cCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3456899999999999999999999999999998887 22 3489999999987 7899999999 999999999999
Q ss_pred eccc
Q 012356 376 AKRA 379 (465)
Q Consensus 376 ~~r~ 379 (465)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 9986
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.23 E-value=2.9e-11 Score=128.39 Aligned_cols=79 Identities=30% Similarity=0.508 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+||++++++++|+++|.+||.|++|.|.++..+ +++|||||+|.+.++|++||+.+ +..|+||.|+|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35689999999999999999999999999999999888766 88999999999999999999999 99999999999854
Q ss_pred c
Q 012356 378 R 378 (465)
Q Consensus 378 r 378 (465)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 25
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.21 E-value=5.7e-11 Score=110.87 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r 378 (465)
..+++|||+||++.+|+++|+++|+.||.|.+|.|..+. ..++||||+|.+.++++.||...+..|.++.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 357999999999999999999999999999998776653 45689999999999999999766999999999998654
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.21 E-value=4.4e-11 Score=126.99 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+||+.++++++|+++|+.||.|..+.|..+..+ +.+|||||+|++.++|.+||+.+ +..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 3579999999999999999999999999999988887766 78999999999999999999999 999999999999888
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
+.+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.7e-10 Score=112.03 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.-+-|||+||+.++|++.|+++|.+||.|.+|+.. +-||||.|.+.++|.+|++.+ +.+|+|..|.|.++++
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecc-------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 35899999999999999999999999999985543 459999999999999999999 9999999999999987
Q ss_pred c
Q 012356 380 N 380 (465)
Q Consensus 380 ~ 380 (465)
.
T Consensus 331 ~ 331 (506)
T KOG0117|consen 331 V 331 (506)
T ss_pred h
Confidence 3
No 28
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.17 E-value=1.9e-10 Score=113.47 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHh-ccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFK-IFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.+.+||.|||+++.+.+|++||. +.|+|..|.+..|...+.+|+|.|+|+++|.+++|++.+ .+.++||.|.|.+...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 46699999999999999999996 689999999999888899999999999999999999999 9999999999998875
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
-.
T Consensus 124 ~q 125 (608)
T KOG4212|consen 124 EQ 125 (608)
T ss_pred hh
Confidence 43
No 29
>smart00362 RRM_2 RNA recognition motif.
Probab=99.16 E-value=1.6e-10 Score=87.76 Aligned_cols=71 Identities=34% Similarity=0.562 Sum_probs=63.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 304 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
+|||+|||.++++++|+++|.+||.|..+.+..+. ...+++|||+|.+.+.|++|+..+ +..|+|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999987766554 456799999999999999999999 799999988874
No 30
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.6e-11 Score=111.78 Aligned_cols=85 Identities=35% Similarity=0.588 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
+-+++|.|||-.||.+..+.||.++|-.||.|.+.+|.+|+-+ .+|||+||.|+++.++++||.++ |..|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 4678999999999999999999999999999999999999988 89999999999999999999999 999999999999
Q ss_pred eccccCC
Q 012356 376 AKRANSR 382 (465)
Q Consensus 376 ~~r~~~r 382 (465)
.+|++..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9998753
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.14 E-value=1.6e-10 Score=124.76 Aligned_cols=82 Identities=29% Similarity=0.480 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...+++|||+||+.++|+++|+++|++||.|.+|+|..+...+++|||||+|.+.++|.+||..+ +..|+|+.|+|.++
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34568899999999999999999999999999999988865588999999999999999999999 99999999999998
Q ss_pred ccc
Q 012356 378 RAN 380 (465)
Q Consensus 378 r~~ 380 (465)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 764
No 32
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=2.5e-10 Score=91.76 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
...-|||+|||+++|.+++.++|.+||.|..+.|-.. +..+|-|||.|++..+|.+|++.+ +..+.++.|.|-+-.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 4688999999999999999999999999998555433 355899999999999999999999 9999999999976554
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.12 E-value=2.5e-10 Score=121.06 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc-cccceEEee
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI-GDRPADVEA 376 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i-~g~~i~Ve~ 376 (465)
.+++|||+|||+++++++|+++|++||.|..++|+++...+++|||||+|.+.++|++||+.+ +..| .|+.|.|..
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 369999999999999999999999999999999988855589999999999999999999999 7777 466665543
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.11 E-value=2.3e-10 Score=123.50 Aligned_cols=77 Identities=29% Similarity=0.469 Sum_probs=71.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.+|||+|||.++|+++|+++|++||.|.+|.|..+..+ +++|||||+|.+.++|++||+.+ ...|+|+.|+|.++..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 37999999999999999999999999999998888775 78999999999999999999999 7779999999988753
No 35
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.2e-10 Score=96.24 Aligned_cols=84 Identities=19% Similarity=0.262 Sum_probs=77.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
+..++.-|||.++...+++++|.+.|..||+|+.+.+.+++.+ ..+||+.|+|++.+.|++|+..+ +..|.|..|.|+
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 4567899999999999999999999999999999999999888 78999999999999999999999 899999999999
Q ss_pred eccccC
Q 012356 376 AKRANS 381 (465)
Q Consensus 376 ~~r~~~ 381 (465)
++--+.
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 886543
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.10 E-value=9e-10 Score=117.44 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||+.+++++|+++|+.||.|..+.|..+..+ .++|||||+|.+.+.|..||+.| ++.|+|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 4689999999999999999999999999999888777655 78999999999999999999999 999999999999886
Q ss_pred cc
Q 012356 379 AN 380 (465)
Q Consensus 379 ~~ 380 (465)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 43
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.07 E-value=4.8e-10 Score=117.92 Aligned_cols=78 Identities=28% Similarity=0.459 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.++|||+|||..+++++|+++|+.||.|..|.|..+..+ +++|||||+|.+.++|.+||+.| +..|.|+.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999888887766 78999999999999999999999 9999999999999763
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.07 E-value=5.2e-10 Score=117.69 Aligned_cols=80 Identities=23% Similarity=0.317 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
+.+.++|||+|||..+++++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|.+||...+..|.|+.|.|...
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 445789999999999999999999999999999988887666 7899999999999999999986699999999999875
Q ss_pred c
Q 012356 378 R 378 (465)
Q Consensus 378 r 378 (465)
.
T Consensus 166 ~ 166 (457)
T TIGR01622 166 Q 166 (457)
T ss_pred c
Confidence 4
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.07 E-value=9.4e-10 Score=83.94 Aligned_cols=73 Identities=32% Similarity=0.482 Sum_probs=65.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 304 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
+|||+|||..+++++|+++|..+|.|..+.+..+.....++++||+|.+.++|..|++.+ +..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999987776555466899999999999999999999 8779999998863
No 40
>smart00360 RRM RNA recognition motif.
Probab=99.07 E-value=6.5e-10 Score=83.96 Aligned_cols=69 Identities=33% Similarity=0.446 Sum_probs=61.9
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 307 VRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 307 V~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
|+|||..+++++|+++|+.||.|..+.+...... ..+++|||+|.+.++|.+|++.+ +..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999888766543 67899999999999999999999 789999998874
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1e-09 Score=102.60 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
.++.++|||+|++..+|+++|++.|+.||.|..|+|.. -+||+||.|++.|+|.+||..+ +.+|.|+.+++.+-
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-----~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-----DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-----ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 45689999999999999999999999999999977763 3599999999999999999999 99999999999988
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
+...
T Consensus 236 Ke~~ 239 (321)
T KOG0148|consen 236 KEGD 239 (321)
T ss_pred ccCC
Confidence 7643
No 42
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.2e-10 Score=105.44 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
+.++|||++|..++++.-|...|-.||.|+.+.|.++... +.|+|+||+|+..++|.+||..+ ..+|.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4589999999999999999999999999999999999877 88999999999999999999999 999999999999998
Q ss_pred cc
Q 012356 379 AN 380 (465)
Q Consensus 379 ~~ 380 (465)
|-
T Consensus 89 P~ 90 (298)
T KOG0111|consen 89 PE 90 (298)
T ss_pred Cc
Confidence 74
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=1.4e-09 Score=101.01 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
+...+.|.|.-||.++|+++|+.+|...|+|++|++..|+.+ ++-||+||.|-++.+|++||..+ ++.+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 344588999999999999999999999999999999988877 88999999999999999999999 9999999999999
Q ss_pred ccccC
Q 012356 377 KRANS 381 (465)
Q Consensus 377 ~r~~~ 381 (465)
+|+.+
T Consensus 118 ARPSs 122 (360)
T KOG0145|consen 118 ARPSS 122 (360)
T ss_pred ccCCh
Confidence 99864
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.02 E-value=9.9e-10 Score=105.69 Aligned_cols=77 Identities=30% Similarity=0.518 Sum_probs=72.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
.++|||+|||+++++++|+++|.+||.|..+.|..++.. +.+|||||+|.+.+++..|++.+ +..|.|+.|.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999999999999999999999999888888644 89999999999999999999999 899999999999965
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1.7e-09 Score=107.46 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcc-cccceEEee
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILI-GDRPADVEA 376 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i-~g~~i~Ve~ 376 (465)
..++-|||+.||.++.|++|.-+|++.|+|-.++++++... .+||||||+|.+.+.|++||+.+ ..+| .|+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 34799999999999999999999999999999999999666 89999999999999999999999 8887 688888765
Q ss_pred cc
Q 012356 377 KR 378 (465)
Q Consensus 377 ~r 378 (465)
+-
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 54
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.98 E-value=1.8e-09 Score=114.23 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=69.9
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
...+++|||+||++ .+|+++|+++|+.||.|..|+|..++ +|||||+|.+.++|.+||..| +..|.|+.|+|.+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 34578999999998 69999999999999999998886542 589999999999999999999 9999999999998
Q ss_pred cccc
Q 012356 377 KRAN 380 (465)
Q Consensus 377 ~r~~ 380 (465)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 47
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=1.5e-09 Score=101.47 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=76.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
-..+||+.|...++-++|++.|.+||+|.+++|..|.++ ++|||+||.|-..++|++||..| |..|++|.|+-.++..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 578999999999999999999999999999999999988 99999999999999999999999 9999999999999876
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1.4e-09 Score=110.24 Aligned_cols=81 Identities=32% Similarity=0.461 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC------C-Cccccc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS------P-ILIGDR 370 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~------~-~~i~g~ 370 (465)
...+.+|||+|||+++|+++|.++|++||.|..+.|.++.++ +++|.|||.|.+..++++||... + ..|+||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 445799999999999999999999999999999999999988 89999999999999999999975 2 568999
Q ss_pred ceEEeeccc
Q 012356 371 PADVEAKRA 379 (465)
Q Consensus 371 ~i~Ve~~r~ 379 (465)
.|+|..+-+
T Consensus 369 ~Lkv~~Av~ 377 (678)
T KOG0127|consen 369 LLKVTLAVT 377 (678)
T ss_pred EEeeeeccc
Confidence 999987754
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.95 E-value=2.3e-09 Score=113.43 Aligned_cols=73 Identities=27% Similarity=0.357 Sum_probs=65.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC---CCcccccceEEeecc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS---PILIGDRPADVEAKR 378 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~---~~~i~g~~i~Ve~~r 378 (465)
++.|||+|||+++++++|+++|++||.|..|.|.. .++||||+|++.++|++||+.+ +..|+|+.|+|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 47899999999999999999999999999977652 3589999999999999999863 788999999999875
Q ss_pred c
Q 012356 379 A 379 (465)
Q Consensus 379 ~ 379 (465)
.
T Consensus 77 ~ 77 (481)
T TIGR01649 77 S 77 (481)
T ss_pred C
Confidence 4
No 50
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.93 E-value=1.1e-09 Score=103.24 Aligned_cols=71 Identities=21% Similarity=0.387 Sum_probs=66.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
.+|||+|||.++++.+|+.+|++||+|..|+|. |.|+||..++...+..||..| +.+|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 579999999999999999999999999999986 468999999999999999988 99999999999988766
No 51
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.93 E-value=2.1e-09 Score=110.01 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=76.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
+.|||||+|+++++++|..+|+..|.|.++++..|..+ +++||+|++|.+.+.+..|++.+ +.+++||+|+|+++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999998888 89999999999999999999999 99999999999998765
Q ss_pred CC
Q 012356 381 SR 382 (465)
Q Consensus 381 ~r 382 (465)
.+
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 52
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=1.9e-10 Score=101.55 Aligned_cols=84 Identities=21% Similarity=0.282 Sum_probs=75.5
Q ss_pred CCCCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccc
Q 012356 294 SNVNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRP 371 (465)
Q Consensus 294 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~ 371 (465)
+.-+...+..-|||+|||++.|+.||.-+|++||.|..|.+..++.+ +++||||+-|++..+---|+..+ |+.|.||.
T Consensus 27 SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 27 SWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRT 106 (219)
T ss_pred chhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceeccee
Confidence 33456778899999999999999999999999999999888888877 99999999999998888889989 99999999
Q ss_pred eEEeec
Q 012356 372 ADVEAK 377 (465)
Q Consensus 372 i~Ve~~ 377 (465)
|+|+-.
T Consensus 107 irVDHv 112 (219)
T KOG0126|consen 107 IRVDHV 112 (219)
T ss_pred EEeeec
Confidence 999743
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=3e-09 Score=107.93 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=74.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
-.+|.|+||||.+.+.+|+.+|+.||.|..+.|....+.+.+|||||.|....+|..||+.+ +.+|+||.|-|+++-++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 57999999999999999999999999999987776666677899999999999999999999 99999999999999776
Q ss_pred CC
Q 012356 381 SR 382 (465)
Q Consensus 381 ~r 382 (465)
..
T Consensus 197 d~ 198 (678)
T KOG0127|consen 197 DT 198 (678)
T ss_pred cc
Confidence 43
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=1.3e-09 Score=105.45 Aligned_cols=76 Identities=30% Similarity=0.521 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
-.|+|||+.+.++..++.|+..|..||+|+++.+.+|.-+ +.+||+||+|+-++.++-|++.+ +.+++||.|+|..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 4699999999999999999999999999999999998888 88999999999999999999999 9999999999973
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=8.6e-09 Score=102.03 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=71.0
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC--CCcccc--c
Q 012356 296 VNEEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS--PILIGD--R 370 (465)
Q Consensus 296 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~--~~~i~g--~ 370 (465)
...+.+.-+|||+-||..++|.||+.+|++||.|..|.|..|+.+ .++|||||.|.+.+++.+|+.++ -++|-| +
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 334567789999999999999999999999999999888888777 78999999999999999999999 445533 5
Q ss_pred ceEEeeccc
Q 012356 371 PADVEAKRA 379 (465)
Q Consensus 371 ~i~Ve~~r~ 379 (465)
.|.|.++..
T Consensus 108 pvqvk~Ad~ 116 (510)
T KOG0144|consen 108 PVQVKYADG 116 (510)
T ss_pred ceeecccch
Confidence 677766643
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=2.3e-09 Score=105.97 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-C-Ccccc--cceEEe
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-P-ILIGD--RPADVE 375 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~-~~i~g--~~i~Ve 375 (465)
.+.++|||+-|+..+||.+|+++|++||.|++|.|.++.++.+|||+||.|.+.+.|..||+.+ + .++.| ..|.|.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 5579999999999999999999999999999999999988899999999999999999999999 4 34554 578999
Q ss_pred eccccCC
Q 012356 376 AKRANSR 382 (465)
Q Consensus 376 ~~r~~~r 382 (465)
++.++..
T Consensus 202 FADtqkd 208 (510)
T KOG0144|consen 202 FADTQKD 208 (510)
T ss_pred ecccCCC
Confidence 9987543
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.87 E-value=2.9e-09 Score=94.23 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=72.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....+|||+||+..++++.|.++|-+.|+|..+.|..++.+ ..+|||||+|.+.++|+=|++.+ .+.|-|+.|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34689999999999999999999999999999877777666 68999999999999999999999 88899999999988
Q ss_pred c
Q 012356 378 R 378 (465)
Q Consensus 378 r 378 (465)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 58
>smart00361 RRM_1 RNA recognition motif.
Probab=98.76 E-value=2.7e-08 Score=76.60 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=52.0
Q ss_pred HHHHHHHHh----ccCCeeEeE-EEEccCC---CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 316 STELEEAFK----IFGPIKKNG-VQVRSNK---QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 316 e~~L~~~F~----~~G~i~~~~-v~~~~~~---~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
+++|+++|+ +||.|.++. |.+++.+ +++||+||+|.+.++|.+|++.| +..++|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578999998 999999985 6666533 67899999999999999999999 999999998763
No 59
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.8e-08 Score=97.32 Aligned_cols=79 Identities=27% Similarity=0.354 Sum_probs=73.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
..-|||..|.+-+++++|+-+|+.||.|..|.|+.+..+ .+-.||||+|++.+++++|.-+| ...|+.++|+|+++..
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 478999999999999999999999999999999988877 78899999999999999999999 9999999999998865
Q ss_pred c
Q 012356 380 N 380 (465)
Q Consensus 380 ~ 380 (465)
-
T Consensus 319 V 319 (479)
T KOG0415|consen 319 V 319 (479)
T ss_pred h
Confidence 3
No 60
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.70 E-value=3.9e-08 Score=72.15 Aligned_cols=55 Identities=31% Similarity=0.413 Sum_probs=46.7
Q ss_pred HHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 319 LEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 319 L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
|+++|++||.|..+.+. .++ +++|||+|.+.++|++|++.+ +..|+|+.|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~--~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIF--KKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEE--TTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEE--eCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999986553 222 589999999999999999998 99999999999874
No 61
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=5.7e-08 Score=90.39 Aligned_cols=80 Identities=25% Similarity=0.311 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
.+..|||-||..+++|.-|-++|..||.|..|+|..|-.+ +.+||+||...+-++|..||..+ +..+++|.|.|.++.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 4799999999999999999999999999999999998887 89999999999999999999999 999999999999876
Q ss_pred cc
Q 012356 379 AN 380 (465)
Q Consensus 379 ~~ 380 (465)
.+
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 54
No 62
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.70 E-value=1.2e-07 Score=101.08 Aligned_cols=74 Identities=14% Similarity=0.235 Sum_probs=58.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcc------------CCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIF------------GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPIL 366 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~ 366 (465)
....++|||+|||+++|+++|+++|.++ +.|.. +.+. +.++||||+|.+.++|..||...++.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~--~~~~---~~kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSS--VNIN---KEKNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEE--EEEC---CCCCEEEEEeCCHHHHhhhhcCCCeE
Confidence 4456899999999999999999999975 12222 2111 35789999999999999999633999
Q ss_pred ccccceEEeec
Q 012356 367 IGDRPADVEAK 377 (465)
Q Consensus 367 i~g~~i~Ve~~ 377 (465)
|.|+.|+|...
T Consensus 247 ~~g~~l~v~r~ 257 (509)
T TIGR01642 247 YSNVFLKIRRP 257 (509)
T ss_pred eeCceeEecCc
Confidence 99999998644
No 63
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.69 E-value=1.5e-08 Score=99.62 Aligned_cols=80 Identities=26% Similarity=0.447 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~ 379 (465)
+.++|||++|+|+++++.|+..|.+||+|..|.|+.+..+ ++++|+||+|++.+.+.++|....+.|+|+.|.+..+-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 6799999999999999999999999999999999988887 899999999999999999998889999999988887765
Q ss_pred c
Q 012356 380 N 380 (465)
Q Consensus 380 ~ 380 (465)
+
T Consensus 85 r 85 (311)
T KOG4205|consen 85 R 85 (311)
T ss_pred c
Confidence 4
No 64
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.69 E-value=1.2e-07 Score=93.34 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~ 379 (465)
...+|||++||.++++++|++.|.+||.|..+.++++..+ +.++|+||.|++.+++.+++...-+.|+++.+.|..+-+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 5689999999999999999999999999999889999888 899999999999999999988878999999999988877
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
+.
T Consensus 176 k~ 177 (311)
T KOG4205|consen 176 KE 177 (311)
T ss_pred hh
Confidence 53
No 65
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.66 E-value=1.2e-07 Score=96.58 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=73.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..-++.|||.+|...+...+|++||++||.|.-.+|...... ..+||+||++.+.++|.+||..| ..+|.|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 445789999999999999999999999999988888766555 67899999999999999999999 8999999999998
Q ss_pred ccc
Q 012356 377 KRA 379 (465)
Q Consensus 377 ~r~ 379 (465)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 764
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.65 E-value=4e-08 Score=92.91 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
..++|+|+||.+.++.++|+..|.+||.+..|+|. ++|+||.|+-.++|..||+.| +.+|.|++++|..+..
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-------cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 46899999999999999999999999999999885 579999999999999999999 9999999999999987
Q ss_pred cCCCCC
Q 012356 380 NSRVGG 385 (465)
Q Consensus 380 ~~r~~~ 385 (465)
+-|...
T Consensus 150 rlrtap 155 (346)
T KOG0109|consen 150 RLRTAP 155 (346)
T ss_pred ccccCC
Confidence 766443
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=7.3e-08 Score=97.80 Aligned_cols=74 Identities=24% Similarity=0.381 Sum_probs=69.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 305 lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
|||+||+.+++..+|.++|+.||.|.+|+|..+.+. ++|| ||+|++.++|++||+.+ +..+.+++|.|.....+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 999999999999999999999999999999988877 8899 99999999999999999 99999999999766543
No 68
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.63 E-value=3e-08 Score=101.19 Aligned_cols=78 Identities=27% Similarity=0.382 Sum_probs=70.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
..+|||+||.+++++++|+.+|+.||.|..|.+.++..+ .++||+||+|.+.+.+.+|++.+ +++|-|+.|+|.....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 345999999999999999999999999999888888755 89999999999999999999999 9999999999875543
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=8.8e-08 Score=100.43 Aligned_cols=77 Identities=27% Similarity=0.476 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC----CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK----QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~----~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
.++|||+||++++|.++|+.+|...|.|..+.|...++. .+.|||||+|.+.++|++|++.| ++.|+|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999888776655 35599999999999999999999 8999999999998
Q ss_pred cc
Q 012356 377 KR 378 (465)
Q Consensus 377 ~r 378 (465)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 70
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=1.5e-07 Score=91.24 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=67.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC--CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS--PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~--~~~i~g~~i~Ve~ 376 (465)
+...++|||++|...+++.+|+++|.+||+|+.+.|... +++|||+|.+.++|+.|.+++ .+.|+|++|+|.+
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 344689999999999999999999999999999776543 357999999999999999988 6678999999999
Q ss_pred ccc
Q 012356 377 KRA 379 (465)
Q Consensus 377 ~r~ 379 (465)
.++
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 887
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.57 E-value=2e-07 Score=85.71 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=69.7
Q ss_pred CCEEEEcCCCCCCCHHHHHH----HHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 302 GCSIYVRNLAFTTTSTELEE----AFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~----~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+|||.||+..+..++|+. +|++||.|.. |...+..+.+|-|||.|.+.+.|-.|++.+ |.-+-|+.++|.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ild--I~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD--ISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEE--EEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 34999999999999999988 9999999988 444444478999999999999999999999 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++.++.
T Consensus 87 A~s~sd 92 (221)
T KOG4206|consen 87 AKSDSD 92 (221)
T ss_pred ccCccc
Confidence 987653
No 72
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.57 E-value=1.5e-07 Score=89.32 Aligned_cols=84 Identities=26% Similarity=0.334 Sum_probs=76.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEee
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEA 376 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~ 376 (465)
.+.+...+||+|+.+.+|.++++.+|+.||.|..+.|..++.. ++++|+||+|.+.+.++.+|...+..|.++.|.|..
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 3566799999999999999999999999999998888888877 789999999999999999999449999999999999
Q ss_pred ccccC
Q 012356 377 KRANS 381 (465)
Q Consensus 377 ~r~~~ 381 (465)
.+.+.
T Consensus 177 ~r~~~ 181 (231)
T KOG4209|consen 177 KRTNV 181 (231)
T ss_pred eeeec
Confidence 99873
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=4.7e-08 Score=102.44 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
.++.|+|+|||+.++..+|+.+|..||.|++|+|...... ..+|||||+|-++.++.+|+++| ...|.||+|.+++++
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 3789999999999999999999999999999888776444 67999999999999999999999 888999999999997
Q ss_pred c
Q 012356 379 A 379 (465)
Q Consensus 379 ~ 379 (465)
.
T Consensus 692 ~ 692 (725)
T KOG0110|consen 692 S 692 (725)
T ss_pred c
Confidence 5
No 74
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.52 E-value=1.5e-07 Score=83.54 Aligned_cols=80 Identities=19% Similarity=0.334 Sum_probs=71.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEe-EEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKN-GVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~-~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
+..|||+||.+++++..|.+.|+.||.|... +|+.+.++ .+++|+||.|++.+...+||..+ +..++.++|.|+++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 5899999999999999999999999988542 56666676 78899999999999999999999 999999999999987
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
.+.
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 654
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.45 E-value=2.6e-06 Score=80.75 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
+...++|+|.||++.++++||+++|..||.++.+-|.++....+.|.|-|.|...++|.+|++.+ ++.++|+.++++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34458999999999999999999999999999877777777788899999999999999999999 99999999999877
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
.+..
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6543
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.44 E-value=3.4e-07 Score=90.90 Aligned_cols=74 Identities=23% Similarity=0.328 Sum_probs=64.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+.|+|||+|||+++|++.|++-|..||.|...+|+ . +.++++ .|.|.++++|++|+..+ +..++||.|+|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim-e-~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM-E-NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh-c-cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4567999999999999999999999999999987772 2 224444 99999999999999999 9999999999986
No 77
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.43 E-value=3.7e-06 Score=70.30 Aligned_cols=115 Identities=26% Similarity=0.386 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCC--CcceEEEeeeeeeeeCC-CcEE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNY--EDYTAEIKTADAQDSYE-KGVI 92 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~--~~~~~~i~~~d~q~s~~-~~i~ 92 (465)
..|+.+||..|+ .+++.|..||.+.+.+.+.+.+.......|.++|.+.+..+.. ...++.+.+++.+...+ ...+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVV 81 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEE
Confidence 579999999999 8899999999999999887632111256899999999988763 34455578888888754 3466
Q ss_pred EEEEEEEEcCC---CCcccEEEEEEeeecCCCcEEEEcceEee
Q 012356 93 VLVTGCLTGKD---NVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132 (465)
Q Consensus 93 v~V~G~~~~~~---~~~~~F~q~F~L~~~~~~~y~v~nDifr~ 132 (465)
+.+.+.+.... ...+.|.++|.+...+. .|.|.+.+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~w~i~~~~~~~ 123 (124)
T cd00531 82 VSVFGVLRTRGDGEQDVFAGGQTFVLRPQGG-GGKIANRRFRL 123 (124)
T ss_pred EEEEEEEEEccCCceeEEEEEEEEEEEEeCC-EEEEEEEEEec
Confidence 77777777665 44678999999999865 99999999886
No 78
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.40 E-value=5.5e-07 Score=95.20 Aligned_cols=74 Identities=15% Similarity=0.246 Sum_probs=66.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
+++|||+.|+.++++.||.++|+.||.|.+|.+. ..+++|||......+|.+||.+| ...+.++.|+|.++..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 5899999999999999999999999999995443 34689999999999999999999 99999999999988653
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.40 E-value=4e-06 Score=76.75 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC--CcceEEEEEeCChHHHHHHHHhC-CCccc---ccceE
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK--QGYCFGFVAFETPGSVQSALEAS-PILIG---DRPAD 373 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~--~~~gfaFV~F~~~~~a~~Al~~~-~~~i~---g~~i~ 373 (465)
..-++|||.+||.++...+|..+|..|-..+.+.+.+.... -.+-+|||+|.+...|++|+..+ |+.|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34699999999999999999999999866655444333222 34579999999999999999999 98884 78899
Q ss_pred EeeccccCCC
Q 012356 374 VEAKRANSRV 383 (465)
Q Consensus 374 Ve~~r~~~r~ 383 (465)
|+.++.+.+.
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 9999987654
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=3.8e-07 Score=84.62 Aligned_cols=72 Identities=25% Similarity=0.431 Sum_probs=64.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccccC
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRANS 381 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~~ 381 (465)
..+||++||+.+.+.+|+.+|..||.|..+.+. .+|+||+|++..+|..|+..+ +.+|.+..+.|++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 579999999999999999999999999985542 489999999999999999999 889998888899888643
No 81
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=1e-06 Score=82.54 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CC-cccc--cceEEee
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PI-LIGD--RPADVEA 376 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~-~i~g--~~i~Ve~ 376 (465)
+.++|||+-|...-.|+|++++|..||.|.+|.|....+..+||++||.|.+..+++.||..+ +. ++-| ..|.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 569999999999999999999999999999998877777788999999999999999999999 43 3433 5688888
Q ss_pred cccc
Q 012356 377 KRAN 380 (465)
Q Consensus 377 ~r~~ 380 (465)
+.+.
T Consensus 98 ADTd 101 (371)
T KOG0146|consen 98 ADTD 101 (371)
T ss_pred ccch
Confidence 8653
No 82
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=1e-06 Score=85.76 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
...-.+|||..+..+.+++||+..|+.||+|+.|.+...... ..+||+|++|.+..+...||..+ -+.++|..|+|-.
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 345689999999999999999999999999999888776655 78999999999999999999999 7789999999976
Q ss_pred ccc
Q 012356 377 KRA 379 (465)
Q Consensus 377 ~r~ 379 (465)
+-+
T Consensus 287 ~vT 289 (544)
T KOG0124|consen 287 CVT 289 (544)
T ss_pred ccC
Confidence 654
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.27 E-value=5.4e-06 Score=84.00 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=61.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC--CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK--QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKR 378 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~--~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r 378 (465)
...|-+++||+.||++||.++|+-.- |....|.+..+. ++.|-|||.|++.+.+++||......|+.|-|.|..+.
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~-Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLE-IVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCc-ccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 36788999999999999999998763 333344333333 77899999999999999999998888999999887664
No 84
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.19 E-value=4.1e-06 Score=76.03 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhcc-CCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIF-GPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
....-+||..+|..+.+.+|..+|.+| |.+..+.+...+.+ .++|||||+|++.+.|.-|-+.| +..|.++.|.+..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345788999999999999999999998 66776444333333 89999999999999999999999 8888999998876
Q ss_pred ccc
Q 012356 377 KRA 379 (465)
Q Consensus 377 ~r~ 379 (465)
-.+
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 655
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.18 E-value=5.2e-06 Score=80.60 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeE--------eEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccccc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK--------NGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDR 370 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~ 370 (465)
...+.|||.|||.++|.+++.++|++||-|.. |++-.+.+.+.+|=|.+.|-..+++.-||+.| +..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34688999999999999999999999998854 34444444488999999999999999999999 9999999
Q ss_pred ceEEeeccccC
Q 012356 371 PADVEAKRANS 381 (465)
Q Consensus 371 ~i~Ve~~r~~~ 381 (465)
.|+|+.++-..
T Consensus 212 ~~rVerAkfq~ 222 (382)
T KOG1548|consen 212 KLRVERAKFQM 222 (382)
T ss_pred EEEEehhhhhh
Confidence 99999887543
No 86
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=6.2e-06 Score=83.83 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=67.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
.+|||+ .++|+.+|.++|+.+|.+.+++|.++. + +-|||||.|.++++|.+||+.+ -..|.|+.|+|-++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 478998 899999999999999999999999888 7 9999999999999999999999 67789999999887654
No 87
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.12 E-value=1.5e-05 Score=78.08 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEe--------EEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCccc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKN--------GVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIG 368 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~--------~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~ 368 (465)
.....+|||.+|+..+++++|.++|.+||.|+.- .|-+++.+ ..++-|.|.|++...|+.||..+ +..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 5567899999999999999999999999988642 23333433 78999999999999999999999 99999
Q ss_pred ccceEEeeccccCC
Q 012356 369 DRPADVEAKRANSR 382 (465)
Q Consensus 369 g~~i~Ve~~r~~~r 382 (465)
+..|+|..+..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998877654
No 88
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.08 E-value=1.1e-05 Score=87.15 Aligned_cols=7 Identities=43% Similarity=0.819 Sum_probs=3.0
Q ss_pred CCCCCCC
Q 012356 416 GYGRNEF 422 (465)
Q Consensus 416 g~grg~~ 422 (465)
|.+||||
T Consensus 1229 GvsrgGf 1235 (1282)
T KOG0921|consen 1229 GVSRGGF 1235 (1282)
T ss_pred cccCCcc
Confidence 3344444
No 89
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.04 E-value=2.5e-06 Score=77.92 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=68.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
..+|||+||...++++.|.++|-+.|+|..+.|....+...+ ||||+|.++-++.-|++.+ +..+-++.|+|.+....
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 589999999999999999999999999998766655555555 9999999999999999999 99999998888766543
No 90
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=97.99 E-value=1.1e-05 Score=70.92 Aligned_cols=99 Identities=10% Similarity=0.087 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhc-----cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCC
Q 012356 14 VVGNAFVEQYYHILH-----QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYE 88 (465)
Q Consensus 14 ~Vg~~Fv~~YY~~l~-----~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~ 88 (465)
++..-||+.||..|+ +-...|..||..++.++|+|. .+.+..+-.+++.+.+.. .+|.|+++||+...+
T Consensus 5 q~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~II~Ng~-----Pi~~~~~F~~~w~~~pv~-TqH~L~s~D~H~IPG 78 (166)
T PF10429_consen 5 QIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKIIWNGT-----PIAQPTAFQQTWQQQPVQ-TQHQLTSFDCHVIPG 78 (166)
T ss_dssp CCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEEEETTE-----EES-HHHHHHHHHCCS---EEEEEEEEEEEEETT
T ss_pred hhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEEEECCc-----cCCCHHHHHHHHHhCccc-eeeeeeeeeeeEeCC
Confidence 456789999999999 446778899999999999998 778888999999998843 489999999999975
Q ss_pred -CcEEEEEEEEEEcCCCCcccEEEEEEeeec
Q 012356 89 -KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQ 118 (465)
Q Consensus 89 -~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~ 118 (465)
+.++|.|++.+..++.-+-|--|...|...
T Consensus 79 sgt~i~N~n~KVRFDEsGrdk~G~~a~l~~~ 109 (166)
T PF10429_consen 79 SGTFIINVNCKVRFDESGRDKLGEDADLPQP 109 (166)
T ss_dssp TTEEEEEEEEEEEEB-SSB-TTS-B--TTS-
T ss_pred CCeEEEeeeEEEEecCCCCCCCCCceeeccc
Confidence 569999999999977666666777777653
No 91
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.95 E-value=1.3e-05 Score=84.30 Aligned_cols=81 Identities=22% Similarity=0.331 Sum_probs=72.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC----CcceEEEEEeCChHHHHHHHHhC-CCcccccceE
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK----QGYCFGFVAFETPGSVQSALEAS-PILIGDRPAD 373 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~----~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~ 373 (465)
++..+.|||+||+..++++.|...|..||+|..++|++.+.. +.+.++||-|-+..++++|++.+ ++.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 566799999999999999999999999999999999877544 45678999999999999999999 9999999999
Q ss_pred Eeeccc
Q 012356 374 VEAKRA 379 (465)
Q Consensus 374 Ve~~r~ 379 (465)
+-+.++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 888764
No 92
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=1.8e-05 Score=81.50 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=61.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceE
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPAD 373 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~ 373 (465)
....+|+|-|||..++.++|+++|+.||+|+. |.... ..++..||+|-|..+|++||+++ ...|.|++|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~--ir~t~--~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE--IRETP--NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhh--hhccc--ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34589999999999999999999999999998 33222 34789999999999999999999 9999999888
No 93
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.73 E-value=4.5e-05 Score=71.36 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+..+||.+.|..+++++.|-..|.+|-.....+|..++.+ +++||+||.|.+..++.+|+..+ +..++.|.|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 456799999999999999999999999977666667777777 89999999999999999999999 9999999887754
Q ss_pred c
Q 012356 377 K 377 (465)
Q Consensus 377 ~ 377 (465)
.
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 3
No 94
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.68 E-value=0.00027 Score=57.69 Aligned_cols=77 Identities=14% Similarity=0.171 Sum_probs=60.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhcc--CCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCccc----ccceEE
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIF--GPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIG----DRPADV 374 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~--G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~----g~~i~V 374 (465)
++|.|+|||...|.++|.+++... |....+.+.+|-.+ -+.|||||.|.+++.+.+-.+.+ +..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 789999999999999999998653 55555667777655 67899999999999999988887 76653 344566
Q ss_pred eeccc
Q 012356 375 EAKRA 379 (465)
Q Consensus 375 e~~r~ 379 (465)
.+++-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 66654
No 95
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.57 E-value=0.0002 Score=77.69 Aligned_cols=6 Identities=33% Similarity=0.805 Sum_probs=2.7
Q ss_pred CCCCCC
Q 012356 425 QGEFSG 430 (465)
Q Consensus 425 rg~~~g 430 (465)
||||++
T Consensus 1232 rgGfrn 1237 (1282)
T KOG0921|consen 1232 RGGFRN 1237 (1282)
T ss_pred CCcccc
Confidence 444443
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.52 E-value=0.0013 Score=67.22 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=59.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEee
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEA 376 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~ 376 (465)
+..++.++||+..++.++.++|+..-.+ .+.|.+..+.+..|-|+|+|.+.+++..|+-+.+..+..+-|....
T Consensus 281 g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElFl 354 (510)
T KOG4211|consen 281 GHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELFL 354 (510)
T ss_pred CceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhccCCcccCcceeeecc
Confidence 4788899999999999999999876554 4566666666778899999999999999988777777766554443
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.49 E-value=9.2e-05 Score=68.01 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=52.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI 367 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i 367 (465)
...+|||.||..++||++|+++|+.|-....++|. .+...+.+|++|++.+.|..|+..+ |..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~---~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR---ARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe---cCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 36799999999999999999999999877664443 3345688999999999999998887 6544
No 98
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.46 E-value=0.00027 Score=68.81 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=58.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCe--eEeEEEEc-cCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPI--KKNGVQVR-SNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i--~~~~v~~~-~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
....+||+||-|++|++||.+.+...|-- ..+++.-. .+.+++|||.|...+..++++-++.+ ..+|.|+.-.|-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 34889999999999999998888766632 22222222 22389999999999999999999999 788988876664
No 99
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.45 E-value=0.00013 Score=71.73 Aligned_cols=79 Identities=27% Similarity=0.406 Sum_probs=66.2
Q ss_pred CEEE-EcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecccc
Q 012356 303 CSIY-VRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRAN 380 (465)
Q Consensus 303 ~~lf-V~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~~ 380 (465)
.++| |++|++.+++++|+.+|..+|.|..+++..+... ..+||+||.|.+......++......+.++.+.+++..++
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 4555 9999999999999999999999998777666555 7899999999999998888876456678888999887765
Q ss_pred C
Q 012356 381 S 381 (465)
Q Consensus 381 ~ 381 (465)
+
T Consensus 265 ~ 265 (285)
T KOG4210|consen 265 P 265 (285)
T ss_pred c
Confidence 4
No 100
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.42 E-value=0.00022 Score=59.36 Aligned_cols=69 Identities=30% Similarity=0.500 Sum_probs=43.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-C-----CcccccceEEe
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-P-----ILIGDRPADVE 375 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~-----~~i~g~~i~Ve 375 (465)
++-|+|.++...++.++|+++|+.||.|..|++.. ....|||-|.+.+.|++|++.+ . +.|.+..+.++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-----G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-----GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-----T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-----CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46789999999999999999999999999866642 3346999999999999999876 2 35666666654
No 101
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=97.39 E-value=0.0013 Score=63.07 Aligned_cols=126 Identities=18% Similarity=0.230 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHHHhhcc--CcchhcccccCCce-eeecCCCCccc-chhhHHHHHHHHhcCCCCcceE---EEee-
Q 012356 9 APSAQVVGNAFVEQYYHILHQ--SPGLVHRFYQDSSL-LSRPDSNGSMT-TVTTMKAINDRILSLNYEDYTA---EIKT- 80 (465)
Q Consensus 9 ~~~~~~Vg~~Fv~~YY~~l~~--~p~~l~~fY~~~s~-~~~~~~~~~~~-~~~g~~~I~~~~~~l~~~~~~~---~i~~- 80 (465)
..+...+|..|.+.||.+|+. +-=...-||.|.+. |.....++... .+.|.+.+..+|.+|..+..-+ .|.+
T Consensus 124 ~~~~~~L~~~F~~WFf~llNs~~~~wgpqhFW~Da~L~~~~~~~~~~~e~~~~Ga~~vs~~Llsl~~e~~l~fnPNl~~~ 203 (262)
T PF15008_consen 124 QYPIHLLAEEFCEWFFELLNSPQDDWGPQHFWPDAKLKLYYSTSEQNVEEYCEGAEEVSLRLLSLVKEERLFFNPNLDSD 203 (262)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccChhhccCCCeEEEEEEcCCCceeEEecCHHHHHHHHHHHhhcccEEECCCCCCC
Confidence 456899999999999999998 44455678988764 44433333333 4589999999999887553222 2334
Q ss_pred -eeeeeeCCCcEEEEEEEEEEcCCCCcccEEEEEEeeecC--CCcEEEEcceEeeec
Q 012356 81 -ADAQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQD--KGGYFVLNDVFRFVE 134 (465)
Q Consensus 81 -~d~q~s~~~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~--~~~y~v~nDifr~~~ 134 (465)
+.|.-+..|-|+|.|.|+|-..+.-.=-|=|.|=|...+ ++.|.|.+=-+++..
T Consensus 204 G~k~~~~phGlV~V~v~GTvH~~~~ClGiFEq~FGLiRdP~~~N~WKiK~~~l~i~~ 260 (262)
T PF15008_consen 204 GVKGRISPHGLVLVAVCGTVHRDNTCLGIFEQIFGLIRDPFAENNWKIKFVNLRIRG 260 (262)
T ss_pred CcceEEcCCCcEEEEEeeeEecCCceEeehhhhhhcccCccccCceeEEEEEEEEEe
Confidence 666667888899999999987664455699999998753 348988876565543
No 102
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.29 E-value=0.0012 Score=51.79 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=46.2
Q ss_pred CEEEEcCCCCCCCHHH----HHHHHhccCC-eeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 303 CSIYVRNLAFTTTSTE----LEEAFKIFGP-IKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~----L~~~F~~~G~-i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..|||.|||.+.+... |++++..||. |.. | ..+.|+|-|.+.+.|.+|++.+ +-.+-|++|.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~--v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS--V-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE--E-------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4699999999888755 6677778864 333 2 2367999999999999999999 9999999999998
Q ss_pred cc
Q 012356 377 KR 378 (465)
Q Consensus 377 ~r 378 (465)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 74
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.22 E-value=0.011 Score=58.33 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=58.2
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc--cccceEEeecccc
Q 012356 307 VRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI--GDRPADVEAKRAN 380 (465)
Q Consensus 307 V~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i--~g~~i~Ve~~r~~ 380 (465)
|-|--+.+|.+-|..+....|+|.++.|..+ + ---|.|+|++.+.|++|.+.| +..| +.+.|+|+++++.
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk-n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK-N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec-c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 3466677999999999999999999766543 2 235999999999999999999 8877 6689999999984
No 104
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=97.18 E-value=0.0024 Score=66.61 Aligned_cols=122 Identities=19% Similarity=0.265 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHHhhccCcchhc-ccccCCceeeec------C--CC-------------------Cc---ccchhh
Q 012356 10 PSAQVVGNAFVEQYYHILHQSPGLVH-RFYQDSSLLSRP------D--SN-------------------GS---MTTVTT 58 (465)
Q Consensus 10 ~~~~~Vg~~Fv~~YY~~l~~~p~~l~-~fY~~~s~~~~~------~--~~-------------------~~---~~~~~g 58 (465)
....++-.+|+++||..++.+..++- ..|+++|+++.. . .+ -. .....|
T Consensus 335 ~~l~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g 414 (585)
T KOG3763|consen 335 EELKQLVLQFLQQYYKIYDNNDGQLLLYAYHDNSTFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHG 414 (585)
T ss_pred hHHHHHHHHHHHHHHHhhcCchhhhHHhhcCccceeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhcc
Confidence 35677889999999999996665554 457789987531 1 00 00 012457
Q ss_pred HHHHHHHHhcCCCCcceEEEe----eeeeeeeCCCcEEEEEEEEEEcCC----CCccc---EEEEEEeeecCCCcEEEEc
Q 012356 59 MKAINDRILSLNYEDYTAEIK----TADAQDSYEKGVIVLVTGCLTGKD----NVKKK---FTQTFFLAPQDKGGYFVLN 127 (465)
Q Consensus 59 ~~~I~~~~~~l~~~~~~~~i~----~~d~q~s~~~~i~v~V~G~~~~~~----~~~~~---F~q~F~L~~~~~~~y~v~n 127 (465)
..+|...|..||-. .|-+. ++-+|. .+++.+.|.|.+.-.+ ..-+. |+.||++.|-++.+-.|.|
T Consensus 415 ~~~Iv~aLs~LPkT--~Hdl~s~vvDv~~~~--~~~l~ftv~G~f~d~~g~~~~s~~~~~~FtRtfvv~P~~ns~l~iv~ 490 (585)
T KOG3763|consen 415 ACDIVVALSALPKT--QHDLDSFVVDVWYQT--GNLLGFTVAGVFRDGEGQNSPSNRALLGFTRTFVVTPRENSGLAIVN 490 (585)
T ss_pred chHHHHHHHhCccc--hhhhhhhheeeeecc--cceEEEEEEEEeecCCccCCcccccccccceEEEEeeCCCCceEEEe
Confidence 78999999999943 44433 344443 4678999999987432 12244 9999999998877999999
Q ss_pred ceEeeecc
Q 012356 128 DVFRFVEE 135 (465)
Q Consensus 128 Difr~~~~ 135 (465)
|.+-.-..
T Consensus 491 d~Lfi~~~ 498 (585)
T KOG3763|consen 491 DQLFIASA 498 (585)
T ss_pred ceeEEeec
Confidence 98754443
No 105
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.13 E-value=0.0038 Score=68.33 Aligned_cols=75 Identities=11% Similarity=-0.019 Sum_probs=50.3
Q ss_pred CCEEEEc-CCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVR-NLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~-nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
..++||. +--..++..+|-.++..-+.|..-.|--. .....|.||+... ..+...+..+ ...+.|+.|.|+..+.
T Consensus 486 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i--~i~~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 486 MQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNI--KLFASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred CEEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcE--EEeCCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 3456663 22446888899888876666643211100 0124588999864 5677888888 8899999999998753
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.09 E-value=0.00051 Score=71.47 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||++||...+++.+++++..||.++...+..+... .+++|||.+|.+......|+..+ |+.++++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34689999999999999999999999999999877777765 78999999999999999999999 99999999999877
Q ss_pred cc
Q 012356 378 RA 379 (465)
Q Consensus 378 r~ 379 (465)
..
T Consensus 367 ~~ 368 (500)
T KOG0120|consen 367 IV 368 (500)
T ss_pred hc
Confidence 65
No 107
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.00 E-value=0.0004 Score=71.62 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEee
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEA 376 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~ 376 (465)
++.+.+++|+--|...++..+|.++|+.+|.|..|.|+.++.. +++|.+||+|.|.+.+..||...|..+.|..|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 4567799999999999999999999999999999988888877 899999999999999999997669999999998875
Q ss_pred c
Q 012356 377 K 377 (465)
Q Consensus 377 ~ 377 (465)
.
T Consensus 255 s 255 (549)
T KOG0147|consen 255 S 255 (549)
T ss_pred c
Confidence 4
No 108
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.96 E-value=0.00051 Score=63.99 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=59.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEE
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADV 374 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~V 374 (465)
..+.|+|.||+..+.+.+|+++|..+|.+....+ .++++||+|.+.+++.+||..+ +..+.++.|.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 3589999999999999999999999999844211 3578999999999999999999 99999999999
No 109
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.88 E-value=0.0034 Score=62.68 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=65.9
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
...|.|.||.. .+|.+-|.-+|.-||.|.+|+|...+ +-.|.|.+.+...|+-|++.+ ++.|.|++|+|.++|-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 57888999865 58999999999999999998886543 256999999999999999999 9999999999999885
Q ss_pred c
Q 012356 380 N 380 (465)
Q Consensus 380 ~ 380 (465)
.
T Consensus 373 ~ 373 (492)
T KOG1190|consen 373 T 373 (492)
T ss_pred c
Confidence 4
No 110
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.62 E-value=0.01 Score=56.03 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=46.7
Q ss_pred HHHHHHh-ccCCeeEeEEEEccCC--CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 318 ELEEAFK-IFGPIKKNGVQVRSNK--QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 318 ~L~~~F~-~~G~i~~~~v~~~~~~--~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
+|...|. +||+|+.++| ..+. ...|-+||.|...++|++|++.+ +-.|+|++|..++..
T Consensus 84 d~f~E~~~kygEiee~~V--c~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNV--CDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhh--hcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 8999998543 2222 67889999999999999999999 999999999988663
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.43 E-value=0.012 Score=54.73 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=59.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccc-ccceEEeecc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIG-DRPADVEAKR 378 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~-g~~i~Ve~~r 378 (465)
...||+.|||..++.+.|..+|.+|...+.+.+. .. -.+.|||+|.+...+..|...+ +..|- ...++|..++
T Consensus 146 n~ilf~~niP~es~~e~l~~lf~qf~g~keir~i--~~--~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 146 NNILFLTNIPSESESEMLSDLFEQFPGFKEIRLI--PP--RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred ceEEEEecCCcchhHHHHHHHHhhCcccceeEec--cC--CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 5899999999999999999999999888874432 22 2478999999998888888888 77664 6677776654
No 112
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=96.39 E-value=0.071 Score=45.08 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceee-ecCCCCcccchhhHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCc
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLS-RPDSNGSMTTVTTMKAINDRILSL---NYEDYTAEIKTADAQDSYEKG 90 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~-~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~~~d~q~s~~~~ 90 (465)
=...+.+|+..|+ .+++.|..+|.+++.+. ..+. ...|.++|.+.+..+ .....++.+.....+-..++.
T Consensus 6 i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (128)
T TIGR02246 6 IRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQ-----VWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDL 80 (128)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCC-----eecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCE
Confidence 3567888999988 58999999999998776 3433 578999999988643 122334565555544433343
Q ss_pred EEEEEEEEEEcCCCC-c---ccEEEEEEeeecCCCcEEEEcceE
Q 012356 91 VIVLVTGCLTGKDNV-K---KKFTQTFFLAPQDKGGYFVLNDVF 130 (465)
Q Consensus 91 i~v~V~G~~~~~~~~-~---~~F~q~F~L~~~~~~~y~v~nDif 130 (465)
+++...-.+...+.. . ....-+|++...+. +|.|..|=+
T Consensus 81 A~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g-~W~I~~~h~ 123 (128)
T TIGR02246 81 AIVHAIQTITAPGKGRARPDAAVRLTFVAVKRDG-RWLLAADHN 123 (128)
T ss_pred EEEEEEEEEEcCCCCCCCCCcceEEEEEEEeeCC-eEEEEeccC
Confidence 444333334443321 1 12333555655555 899988743
No 113
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.39 E-value=0.024 Score=50.97 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=52.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI 367 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i 367 (465)
...+|.|.+||...+++||+++..+.|.|....|.. -+++.|+|-..++++-||.++ ...+
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r------Dg~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR------DGVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec------ccceeeeeeehhhHHHHHHhhccccc
Confidence 348999999999999999999999999998766643 257999999999999999998 5444
No 114
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=96.38 E-value=0.023 Score=47.53 Aligned_cols=108 Identities=11% Similarity=0.126 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhc-C-CCCcceEEEeeeeeeeeCCCcEEE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILS-L-NYEDYTAEIKTADAQDSYEKGVIV 93 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~-l-~~~~~~~~i~~~d~q~s~~~~i~v 93 (465)
..++++|++.+. .+-+.|..||.++.++...+.+. .+.|.++|.+++.. + .+..+.+.+..+..+. .++.+++
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~a~~ 77 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGE---IWRGREAIRAYFERDFESFRPISIEFEDVQVSV-SGDVAVV 77 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSS---EEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEE-ETTEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCc---eECCHHHHHHHHHHHhhhCceEEEEEEEEEEEE-CCCEEEE
Confidence 367899999988 66799999999888877654421 46789998888854 2 1246777777777775 3444555
Q ss_pred EEEEEEEc--CCCC-cccEEEEEEeeecCCCcEEEEcce
Q 012356 94 LVTGCLTG--KDNV-KKKFTQTFFLAPQDKGGYFVLNDV 129 (465)
Q Consensus 94 ~V~G~~~~--~~~~-~~~F~q~F~L~~~~~~~y~v~nDi 129 (465)
.....+.. ++.. ...+..||+|...++ .|.|...=
T Consensus 78 ~~~~~~~~~~~~~~~~~~~r~t~v~~k~~~-~Wki~h~H 115 (121)
T PF13474_consen 78 TGEFRLRFRNDGEEIEMRGRATFVFRKEDG-GWKIVHIH 115 (121)
T ss_dssp EEEEEEEEECTTCEEEEEEEEEEEEEEETT-EEEEEEEE
T ss_pred EEEEEEEEecCCccceeeEEEEEEEEEECC-EEEEEEEE
Confidence 55555543 2222 466888999988887 99987643
No 115
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.33 E-value=0.0073 Score=58.86 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=60.6
Q ss_pred CCCEEEEcCCCCCCCHHH----H--HHHHhccCCeeEeEEEEccCC--CcceE--EEEEeCChHHHHHHHHhC-CCcccc
Q 012356 301 EGCSIYVRNLAFTTTSTE----L--EEAFKIFGPIKKNGVQVRSNK--QGYCF--GFVAFETPGSVQSALEAS-PILIGD 369 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~----L--~~~F~~~G~i~~~~v~~~~~~--~~~gf--aFV~F~~~~~a~~Al~~~-~~~i~g 369 (465)
...-+||-+|+..+-.++ | .++|.+||.|+.+.|...... ...+. .||+|.+.++|.++|... +..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 347789999999887766 2 578999999998655433311 11222 499999999999999999 999999
Q ss_pred cceEEeeccc
Q 012356 370 RPADVEAKRA 379 (465)
Q Consensus 370 ~~i~Ve~~r~ 379 (465)
|.|+..+-..
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999876654
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.012 Score=60.59 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=56.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHh-ccCCeeEeEEEEc-cCCCcceEEEEEeCChHHHHHHHHhC
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFK-IFGPIKKNGVQVR-SNKQGYCFGFVAFETPGSVQSALEAS 363 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~~~v~~~-~~~~~~gfaFV~F~~~~~a~~Al~~~ 363 (465)
-...++||||+||.-++.++|..+|. .||.|..+.|-+| +-+..+|-|-|+|.+..+..+||.+.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 44569999999999999999999998 7999999777666 33478899999999999999999986
No 117
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.011 Score=60.84 Aligned_cols=62 Identities=27% Similarity=0.420 Sum_probs=49.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC----Ccce---EEEEEeCChHHHHHHHHhC
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK----QGYC---FGFVAFETPGSVQSALEAS 363 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~----~~~g---faFV~F~~~~~a~~Al~~~ 363 (465)
-.++|||++||++++|+.|...|..||.+.. +...+.+. ..+| |+|+.|+++..++.-|.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 4589999999999999999999999999762 23221222 3466 9999999999988877765
No 118
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.69 E-value=0.029 Score=40.45 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=39.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHH
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSAL 360 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al 360 (465)
+.|-|.+.+.+.. +++..+|..||+|..+.+. . ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~---~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--E---STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--C---CCcEEEEEECCHHHHHhhC
Confidence 4567788876644 5566799999999985443 1 2457999999999999985
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.67 E-value=0.03 Score=59.61 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=60.9
Q ss_pred CCC-EEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEcc-CC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 301 EGC-SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 301 ~~~-~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~-~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
.++ -|-+.|+|++++-+||-++|..|-.+.. .|.++. +. ...|-|.|-|++.++|.+|...+ +..|..|.|++.+
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~-sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPN-SIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCC-ceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344 7788999999999999999999965543 233333 33 77889999999999999999999 8999999888764
No 120
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.064 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=12.1
Q ss_pred CHHHHHHHHhccCCeeEeEEEEc
Q 012356 315 TSTELEEAFKIFGPIKKNGVQVR 337 (465)
Q Consensus 315 te~~L~~~F~~~G~i~~~~v~~~ 337 (465)
+.+.|-++=+-||.|.++.+.+.
T Consensus 87 nk~qIGKVDEIfG~i~d~~fsIK 109 (215)
T KOG3262|consen 87 NKEQIGKVDEIFGPINDVHFSIK 109 (215)
T ss_pred chhhhcchhhhcccccccEEEEe
Confidence 34444444445677766555444
No 121
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.61 E-value=0.13 Score=52.10 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=54.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEc---cCC----C-------cceEEEEEeCChHHHHHHHHhC
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVR---SNK----Q-------GYCFGFVAFETPGSVQSALEAS 363 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~---~~~----~-------~~gfaFV~F~~~~~a~~Al~~~ 363 (465)
+...++|.+-|||.+-.-+-|.++|+.+|.|+.|.|... ... . .+-+|+|+|+..+.|.+|.+.+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 456899999999999888999999999999999877544 111 1 2457999999999999999988
No 122
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.56 E-value=0.025 Score=59.12 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=49.6
Q ss_pred HHHHHHhccCCeeEeEEEEc-cCC---CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 318 ELEEAFKIFGPIKKNGVQVR-SNK---QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 318 ~L~~~F~~~G~i~~~~v~~~-~~~---~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
+++..+.+||.|..|.|... .+. -..|-.||+|.+.+++++|.++| |.+|++|.|...+..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 45556779999999877666 222 45677899999999999999999 999999998877654
No 123
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=95.49 E-value=0.13 Score=41.63 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=66.7
Q ss_pred HHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEEE
Q 012356 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVT 96 (465)
Q Consensus 18 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i~v~V~ 96 (465)
..+++|...++ .+.+.|..||.++..+...+. ...+.+++.+.+..-......+++..+..+.. ++..++...
T Consensus 3 a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~g-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~-gd~a~~~~~ 76 (107)
T PF14534_consen 3 ALEEQYEDAFNAGDIDALASLYADDFVFVGPGG-----TILGKEAILAAFKSGFARFSSIKFEDVEVRVL-GDTAVVRGR 76 (107)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTEEEEEEEEETTS-----EEEEHHHHHHHHHHHCEEEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCCCEEEECCCC-----CEeCHHHHHHHHhhccCCCceEEEEEEEEEEE-CCEEEEEEE
Confidence 46778888876 669999999999987776543 34588889998886433444666666777776 555555555
Q ss_pred EEEEcCCCC---cccEEEEEEeeecCCCcEEE
Q 012356 97 GCLTGKDNV---KKKFTQTFFLAPQDKGGYFV 125 (465)
Q Consensus 97 G~~~~~~~~---~~~F~q~F~L~~~~~~~y~v 125 (465)
..++..... ...+..+.++..++. .|-|
T Consensus 77 ~~~~~~~~g~~~~~~~~~~~v~~k~~g-~W~i 107 (107)
T PF14534_consen 77 WTFTWRGDGEPVTIRGRFTSVWKKQDG-KWRI 107 (107)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEEEETT-EEEE
T ss_pred EEEEEecCCceEEEEEEEEEEEEEeCC-EEEC
Confidence 555554321 244555555655654 7765
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.38 E-value=0.026 Score=56.10 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=62.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCC-eeE--eEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGP-IKK--NGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~--~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...|-+++||+..+.++|.++|..|-. |+. |.+.+....+..|-|||+|.+.+.+.+|..+. .+....|.|.|..+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 467889999999999999999998854 333 45666555588899999999999999999888 55556888888766
Q ss_pred cc
Q 012356 378 RA 379 (465)
Q Consensus 378 r~ 379 (465)
..
T Consensus 360 S~ 361 (508)
T KOG1365|consen 360 SV 361 (508)
T ss_pred cH
Confidence 53
No 125
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.16 E-value=0.079 Score=46.34 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=42.9
Q ss_pred HHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecccc
Q 012356 318 ELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRAN 380 (465)
Q Consensus 318 ~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~~ 380 (465)
+|-+.|..||.+.-+++. . +.-+|+|.+-..|.+||...++.|+|+.|+|..+.+.
T Consensus 52 ~ll~~~~~~GevvLvRfv--~-----~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV--G-----DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE--T-----TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEe--C-----CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 677788899988764332 2 2369999999999999999999999999999988763
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.05 E-value=0.022 Score=56.57 Aligned_cols=75 Identities=23% Similarity=0.210 Sum_probs=55.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCC----eeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGP----IKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~----i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
--|-+++||+++++.++..+|...-. ...+-+..+.+.+..|-|||.|..+++|+.||.+....|+-|.|.+..+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56778899999999999999973222 2222222333457789999999999999999999866777776655433
No 127
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.95 E-value=0.073 Score=43.77 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=50.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEc--------cCCCcceEEEEEeCChHHHHHHHHhCCCcccccce-
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVR--------SNKQGYCFGFVAFETPGSVQSALEASPILIGDRPA- 372 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~--------~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i- 372 (465)
.+.|.|=+.|.. ....|.++|++||.|....-.++ ........-.|.|+++.+|++||.+.|..|+|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 466888888877 66778899999999876320000 00134567899999999999999999999988644
Q ss_pred EEeec
Q 012356 373 DVEAK 377 (465)
Q Consensus 373 ~Ve~~ 377 (465)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 45554
No 128
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.77 E-value=0.32 Score=48.45 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=66.7
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+++-+.|-+|... ++-+.|-++|-.||.|.+|+++..+ .+-|.|+..|..++++||..| +..+-|.+|.|..
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 456799999999875 6778899999999999998776433 468999999999999999999 8888899999988
Q ss_pred cccc
Q 012356 377 KRAN 380 (465)
Q Consensus 377 ~r~~ 380 (465)
++..
T Consensus 360 SkQ~ 363 (494)
T KOG1456|consen 360 SKQN 363 (494)
T ss_pred cccc
Confidence 8764
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.74 E-value=0.036 Score=60.66 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=64.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccc--cceEEee
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGD--RPADVEA 376 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g--~~i~Ve~ 376 (465)
...+.+||++|..++....|...|..||.|..|. ++ +..-|++|.|++...++.|++.+ +..|++ +.|.|.+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Id--y~---hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIID--YR---HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeee--cc---cCCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 3468999999999999999999999999999843 33 34579999999999999999999 888866 6788988
Q ss_pred ccc
Q 012356 377 KRA 379 (465)
Q Consensus 377 ~r~ 379 (465)
+.+
T Consensus 528 a~~ 530 (975)
T KOG0112|consen 528 ASP 530 (975)
T ss_pred ccC
Confidence 864
No 130
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.73 E-value=0.075 Score=53.39 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=61.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccc-cceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGD-RPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g-~~i~Ve~ 376 (465)
.+...+|...|+|.++++++|+.+|.+-|.......... +.+.++.+.+++.+.|-.||..+ .+.++. ..|+|.+
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 355689999999999999999999998887644333222 23468999999999999999888 777755 4789998
Q ss_pred ccc
Q 012356 377 KRA 379 (465)
Q Consensus 377 ~r~ 379 (465)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 764
No 131
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.59 E-value=0.14 Score=53.43 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=59.1
Q ss_pred CCCEEEEcCCCCCCCH------HHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccc-ccce
Q 012356 301 EGCSIYVRNLAFTTTS------TELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIG-DRPA 372 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te------~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~-g~~i 372 (465)
-...|+|-|+|---.. .-|..+|+++|+|..+.+.++..+..+||.|++|.+..+|+.|++.+ |+.|+ .+..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3478889999863222 23677899999998877777776688999999999999999999999 88774 4555
Q ss_pred EEe
Q 012356 373 DVE 375 (465)
Q Consensus 373 ~Ve 375 (465)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 564
No 132
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=94.53 E-value=0.43 Score=40.09 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhc-----CCCCcceEEEeeeeeeeeCCCc
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILS-----LNYEDYTAEIKTADAQDSYEKG 90 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~-----l~~~~~~~~i~~~d~q~s~~~~ 90 (465)
.+-|+.|++-|. .+.+.|.+.++++..|.+.. ++.. .....++-.+.+.+ .....+..+|.++|... +.
T Consensus 7 ~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~-~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g---~~ 81 (116)
T PF12893_consen 7 EATVQDYFDGLYNGDSEKLRSAFHPDARLQGVR-KGKL-RTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG---DV 81 (116)
T ss_dssp HHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEE-TTEE-EEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET---TE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEc-CCce-EEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC---CE
Confidence 455788888887 78999999999998876665 3332 23445555555553 34457888998888774 44
Q ss_pred EEEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEe
Q 012356 91 VIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFR 131 (465)
Q Consensus 91 i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr 131 (465)
-++.|.-.+. ...|.-.|.|.+.+. +|-|.|=+|.
T Consensus 82 A~a~v~~~~~-----~~~~~d~~~L~K~dg-~WkIv~k~~~ 116 (116)
T PF12893_consen 82 ASAKVEYEFP-----GFWFVDYFTLVKTDG-GWKIVSKVYH 116 (116)
T ss_dssp EEEEEEEEEE-----TEEEEEEEEEEEETT-EEEEEEEEEE
T ss_pred EEEEEEEEEC-----CCceEEEEEEEEECC-EEEEEEEecC
Confidence 5556665544 347999999999876 9999998774
No 133
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.52 E-value=0.1 Score=51.36 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=59.1
Q ss_pred CCCCEEEEcCCCC----CCC-------HHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc
Q 012356 300 AEGCSIYVRNLAF----TTT-------STELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI 367 (465)
Q Consensus 300 ~~~~~lfV~nLp~----~~t-------e~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i 367 (465)
...++|.++||=. ..+ .++|++-..+||.|..|.|. ++.+.|.+-|.|.+.+.|..||+.| |..|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~---d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY---DRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe---ccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 3458899999722 233 24556667899999986553 2356799999999999999999999 9999
Q ss_pred cccceEEeecc
Q 012356 368 GDRPADVEAKR 378 (465)
Q Consensus 368 ~g~~i~Ve~~r 378 (465)
+||+|.-+...
T Consensus 340 dgRql~A~i~D 350 (382)
T KOG1548|consen 340 DGRQLTASIWD 350 (382)
T ss_pred cceEEEEEEeC
Confidence 99999887654
No 134
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.34 E-value=0.0055 Score=66.46 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=59.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRP 371 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~ 371 (465)
.+..++||+||+..+.+.+|...|..+|.+..+.|....++ +.+|+||++|.+++.+.+||... .+.++...
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~ 738 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKIS 738 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhh
Confidence 34589999999999999999999999999887666544455 88999999999999999999988 55555333
No 135
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.26 E-value=0.25 Score=36.73 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=42.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcc----CCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIF----GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS 363 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~ 363 (465)
..+|+|+++. +.+.++|+.+|..| +.. . |....+. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~--IEWIdDt----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-R--IEWIDDT----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-e--EEEecCC----cEEEEECCHHHHHHHHHcC
Confidence 3689999985 57889999999998 433 2 4444443 4789999999999999864
No 136
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.12 E-value=0.029 Score=53.04 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=56.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-------------CcceEEEEEeCChHHHHHHHHhC-CCc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-------------QGYCFGFVAFETPGSVQSALEAS-PIL 366 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-------------~~~gfaFV~F~~~~~a~~Al~~~-~~~ 366 (465)
...-||+++||..++..-|+++|+.||.|-+|.+.-..+. ....-|+|+|.+...|.++.+.| +..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3578999999999999999999999999988555432211 11123689999999999998888 888
Q ss_pred ccccc
Q 012356 367 IGDRP 371 (465)
Q Consensus 367 i~g~~ 371 (465)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88864
No 137
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.11 E-value=0.052 Score=51.36 Aligned_cols=76 Identities=29% Similarity=0.414 Sum_probs=62.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-----CCcccccceEEeec
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-----PILIGDRPADVEAK 377 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-----~~~i~g~~i~Ve~~ 377 (465)
..|||.||..-++-+.|++.|+.||.|..-.+.+|...+..+-++|+|...-.+.+|+... +..+.++..-|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 7899999999999999999999999998877777776667777899999999888888876 33446666666655
Q ss_pred c
Q 012356 378 R 378 (465)
Q Consensus 378 r 378 (465)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 4
No 138
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=94.08 E-value=0.14 Score=40.85 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=50.6
Q ss_pred HHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEEEEE
Q 012356 20 VEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKGVIVLVT 96 (465)
Q Consensus 20 v~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d~q~s~~~~i~v~V~ 96 (465)
|+.||+.++ .+.+.|..||+++..+..... ...|.++|.+.+..+- +...++.|..+ ...++.+++...
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~gd~v~~~~~ 72 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDPGG-----TLRGREAIREFFEEFFESFPDIRFEIHDI---FADGDRVVVEWT 72 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEETTS-----EEESHHHHHHHHHHHHHHEEEEEEEEEEE---EEETTEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeCCC-----cccCHHHHHHHHHHHHhcCCceEEEEEEE---EEcCCEEEEEEE
Confidence 688999988 667999999999998887633 4789999999887653 44556666665 222344555544
Q ss_pred EEE
Q 012356 97 GCL 99 (465)
Q Consensus 97 G~~ 99 (465)
...
T Consensus 73 ~~~ 75 (102)
T PF12680_consen 73 VTG 75 (102)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 139
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.78 E-value=0.065 Score=56.21 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=62.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHh-ccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc---cccce
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFK-IFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI---GDRPA 372 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i---~g~~i 372 (465)
+....+.|||.||-.-.|.-.|+.++. .+|.|.. +++++ -+.+|||.|.+.++|.+.+.+| ++.+ +.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee--~WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEE--FWMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHH--HHHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 455679999999999999999999998 5666665 34443 3467899999999999999999 7766 77888
Q ss_pred EEeeccc
Q 012356 373 DVEAKRA 379 (465)
Q Consensus 373 ~Ve~~r~ 379 (465)
.+++.+.
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 8887764
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.74 E-value=0.093 Score=55.86 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=57.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
...++||+|+...+..+-++.++..||.|.+++.. -|+|++|..+....+|+..+ ...+++..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--------hhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 35899999999999999999999999998874332 28999999999999999999 8888888776543
No 141
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.69 E-value=0.033 Score=60.70 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=65.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
..+|||.|+|+..|.++|+.++..+|.++++.+...++.+.+|-+||.|.+..++.+++... ...++-+.+.|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 47899999999999999999999999999977666666688999999999999999998887 6666666666655433
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.68 E-value=0.069 Score=53.78 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=56.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC--CCcccccceEEeecccc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS--PILIGDRPADVEAKRAN 380 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~--~~~i~g~~i~Ve~~r~~ 380 (465)
.++|++||...++..+|+.+|...---..-.+++ ..+|+||++.+...+.+|++.+ ..++.|+++.|+..-++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4789999999999999999997541101111222 2489999999999999999999 55789999999876543
No 143
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.57 E-value=0.092 Score=56.02 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=59.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeE-eEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
...-+..|||..||..+++.++-++|...-.|++ |.|......+.++-|||.|..+++...|+... .+.++.|.|+|.
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 3456789999999999999999999998777766 33322222267788999999977776666555 777788888885
No 144
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=92.76 E-value=1.1 Score=47.13 Aligned_cols=16 Identities=6% Similarity=0.175 Sum_probs=7.1
Q ss_pred ceEEEEEeCChHHHHH
Q 012356 343 YCFGFVAFETPGSVQS 358 (465)
Q Consensus 343 ~gfaFV~F~~~~~a~~ 358 (465)
.++.||...+...+..
T Consensus 344 ~ai~l~~~~d~~~~~~ 359 (456)
T PRK10590 344 EALSLVCVDEHKLLRD 359 (456)
T ss_pred eEEEEecHHHHHHHHH
Confidence 3444555444443333
No 145
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=91.93 E-value=1.4 Score=36.80 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLV 95 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i~v~V 95 (465)
..+|+.||..++ .+.+.|..+|.++..+.+.... ....|.++|.+.+..+.-...++.+.. ...-..++.+++..
T Consensus 6 ~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~---~~~~G~~~i~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~ 81 (122)
T cd00781 6 KAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGS---PPRSGRAAIAAFYAQSLGGAKRLELTG-PVRASHGGEAAFAF 81 (122)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCC---CCccCHHHHHHHHHHHhccCceEEecC-ceeeecCCEEEEEE
Confidence 467888999888 6899999999999998764321 257899999999987643211222211 11222344444433
Q ss_pred EEEEEcCCC-CcccEEEEEEee
Q 012356 96 TGCLTGKDN-VKKKFTQTFFLA 116 (465)
Q Consensus 96 ~G~~~~~~~-~~~~F~q~F~L~ 116 (465)
...+...+. ....|+..|.|.
T Consensus 82 ~~~~~~~g~~~~~~~~~v~~~~ 103 (122)
T cd00781 82 RVEFEWEGQPCVVRVIDVMRFD 103 (122)
T ss_pred EEEEEeCCceEEEEEEEEEEEC
Confidence 333433332 223455566663
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.75 E-value=0.23 Score=49.77 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=55.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC----CcceEEEEEeCChHHHHHHHHhCCCcccccceEEe
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK----QGYCFGFVAFETPGSVQSALEASPILIGDRPADVE 375 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~----~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve 375 (465)
..|-|.||...+|.++++.||...|.|..+.+.-..+. ...-.|||-|.+...+..|-..-.+.|-++.|.|-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 47899999999999999999999999988655432111 23456999999999988876655666656655553
No 147
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.55 E-value=0.048 Score=59.76 Aligned_cols=69 Identities=20% Similarity=0.243 Sum_probs=58.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI 367 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i 367 (465)
.....+||++||+..+++.+|+..|..+|.|..|.|.....+...-|+||.|.+...+-.|+..+ +..|
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I 438 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLI 438 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcc
Confidence 44578999999999999999999999999999987766655555678999999999998888887 5555
No 148
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.43 E-value=0.5 Score=45.64 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=46.9
Q ss_pred HHHHHHHHhccCCeeEeEEEEccCC--CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 316 STELEEAFKIFGPIKKNGVQVRSNK--QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 316 e~~L~~~F~~~G~i~~~~v~~~~~~--~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
+++++....+||.|..|-|..+.+. .-.---||+|+..+.+.+|+-.+ |..|+||.++-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 3567788899999998877666443 22234799999999999999999 999999987644
No 149
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.07 E-value=0.62 Score=36.71 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=39.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS 363 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~ 363 (465)
+-.||. +|..+...||.++|+.||.|. |....++ -|||...+.+.+..++..+
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~---VsWi~dT----SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY---VSWINDT----SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE---EEEECTT----EEEEEECCCHHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE---EEEEcCC----cEEEEeecHHHHHHHHHHh
Confidence 556665 999999999999999999986 4444443 5999999999999888776
No 150
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.61 E-value=0.38 Score=50.28 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=53.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhc--cCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC---CCcccccceEEe
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKI--FGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS---PILIGDRPADVE 375 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~--~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~---~~~i~g~~i~Ve 375 (465)
..|-|.++-||..+-.++++.||+. |-++.+|.+-... --||+|++..+|+.|.+.+ -++|.|+.|.-.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 4578889999999999999999974 5566665554332 2699999999999999887 456777766443
No 151
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.71 E-value=1.9 Score=37.52 Aligned_cols=72 Identities=21% Similarity=0.181 Sum_probs=51.6
Q ss_pred CCCCCEEEEcCCCCCCCH-HH---HHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEE
Q 012356 299 EAEGCSIYVRNLAFTTTS-TE---LEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADV 374 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te-~~---L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~V 374 (465)
++...+|.|+-|..++.. +| +...++.||+|.+|... ++--|.|.|.|..+|-+|+.++....-|..+..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC------GRQSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec------CCceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 556788989877666532 33 45556899999985432 345699999999999999999855555665555
Q ss_pred ee
Q 012356 375 EA 376 (465)
Q Consensus 375 e~ 376 (465)
.+
T Consensus 157 sW 158 (166)
T PF15023_consen 157 SW 158 (166)
T ss_pred ec
Confidence 44
No 152
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.97 E-value=0.84 Score=41.66 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=42.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhc-cCCe---eEeEEEEccCC---CcceEEEEEeCChHHHHHHHHhC-CCcc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKI-FGPI---KKNGVQVRSNK---QGYCFGFVAFETPGSVQSALEAS-PILI 367 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i---~~~~v~~~~~~---~~~gfaFV~F~~~~~a~~Al~~~-~~~i 367 (465)
+....+|.|++||++.|++++.+.+.. ++.. ..+.-...... ....-|||.|.+.+++..-...+ ++.|
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 345689999999999999998886665 4444 33221122222 23456899999999999999988 8766
No 153
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=87.45 E-value=0.95 Score=46.85 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=6.3
Q ss_pred ChHHHHHHHHhC
Q 012356 352 TPGSVQSALEAS 363 (465)
Q Consensus 352 ~~~~a~~Al~~~ 363 (465)
+...++.+.+.+
T Consensus 301 ~~~~l~~~Fk~F 312 (419)
T KOG0116|consen 301 TPAELEEVFKQF 312 (419)
T ss_pred CHHHHHHHHhhc
Confidence 344555555555
No 154
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=86.92 E-value=2.2 Score=35.92 Aligned_cols=60 Identities=5% Similarity=0.160 Sum_probs=41.3
Q ss_pred HHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeee
Q 012356 19 FVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTA 81 (465)
Q Consensus 19 Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~ 81 (465)
-|+.||+.++ .+.+.|..||.++..+...... ....|.++|.+.+..|- +.+++++|..+
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~---~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~ 65 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGG---RVLGGKAQLARFLAPYRTAFPDLLVDVVVC 65 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCC---cEeccHHHHHHHHHHHHHhCchhhceeEEE
Confidence 4788999988 5899999999999877654331 13457888887665331 33566666644
No 155
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.82 E-value=0.26 Score=48.58 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=57.6
Q ss_pred CCEEEEcCCCCCCCHHH-H--HHHHhccCCeeEeEEEEccC--C--CcceEEEEEeCChHHHHHHHHhC-CCcccccceE
Q 012356 302 GCSIYVRNLAFTTTSTE-L--EEAFKIFGPIKKNGVQVRSN--K--QGYCFGFVAFETPGSVQSALEAS-PILIGDRPAD 373 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~-L--~~~F~~~G~i~~~~v~~~~~--~--~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~ 373 (465)
...+||-+|+.....+. | ...|.+||.|..+.+..+.. . ...+-++|+|...+++..||... +..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 46778888887765544 3 34688999998865544331 1 23455899999999999999999 8889999877
Q ss_pred Eeeccc
Q 012356 374 VEAKRA 379 (465)
Q Consensus 374 Ve~~r~ 379 (465)
..+..+
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 766654
No 156
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.55 E-value=3.2 Score=40.46 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=49.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccce-EEee
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPA-DVEA 376 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i-~Ve~ 376 (465)
.=|-|-+++.. ....|.++|++||.|.+ ..... .-.+-+|.|.+..++++||.+.+.+|+|..+ -|..
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvk--hv~~~---ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVK--HVTPS---NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeee--eecCC---CCceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 44445567665 45678899999999876 22222 2357899999999999999999999987643 3544
No 157
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.48 E-value=0.3 Score=52.17 Aligned_cols=15 Identities=7% Similarity=0.512 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhh
Q 012356 13 QVVGNAFVEQYYHIL 27 (465)
Q Consensus 13 ~~Vg~~Fv~~YY~~l 27 (465)
...+..||..||..|
T Consensus 39 K~Laaq~I~kffk~F 53 (556)
T PF05918_consen 39 KRLAAQFIPKFFKHF 53 (556)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhhC
Confidence 446666666666544
No 158
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.87 E-value=1.8 Score=33.37 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=37.2
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhccCCeeEe---EEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 304 SIYVR-NLAFTTTSTELEEAFKIFGPIKKN---GVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 304 ~lfV~-nLp~~~te~~L~~~F~~~G~i~~~---~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
+|||. +--..++..+|..++...+.|..- .|.+. ..|.||+-.. +.+..++..+ +..++|++|+|+.+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45662 223467889999999877655432 23222 3578998875 5778888888 89999999999864
No 159
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=83.27 E-value=0.7 Score=47.52 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=55.2
Q ss_pred CCEEEEcCCCCCC-CHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecccc
Q 012356 302 GCSIYVRNLAFTT-TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRAN 380 (465)
Q Consensus 302 ~~~lfV~nLp~~~-te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~~ 380 (465)
.+.|-+.-.++.. +-.+|..+|.+||.|..|.|.+.. -.|.|+|.+..+|-.|-...+..|++|-|+|.+-.+.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-----hhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 3444444445543 567899999999999986554332 3489999999998777655589999999999988763
No 160
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=81.68 E-value=2.7 Score=46.24 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=5.8
Q ss_pred ChHHHHHHHHhC
Q 012356 352 TPGSVQSALEAS 363 (465)
Q Consensus 352 ~~~~a~~Al~~~ 363 (465)
++.....||...
T Consensus 500 ~~~~~~~~i~~~ 511 (629)
T PRK11634 500 EVRHIVGAIANE 511 (629)
T ss_pred CHHHHHHHHHhh
Confidence 344555555543
No 161
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=79.44 E-value=17 Score=31.77 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhhccCcchhcccccCCcee-eecCCCCcccchhhHHHHHHH-HhcCC-CCcceEEEeeeeeeeeCC
Q 012356 12 AQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLL-SRPDSNGSMTTVTTMKAINDR-ILSLN-YEDYTAEIKTADAQDSYE 88 (465)
Q Consensus 12 ~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~-~~~~~~~~~~~~~g~~~I~~~-~~~l~-~~~~~~~i~~~d~q~s~~ 88 (465)
--+.-+.=|.||-.+--+.|=.-|.||.++.+. .|..+.|.+....|.+.+.++ +.+|. |- .++..+|..-.+.+
T Consensus 16 lR~~NR~~Ve~Ym~t~g~~RL~Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwslkcFP--DWeW~nv~ifeT~D 93 (162)
T PF03284_consen 16 LRRINRATVEQYMNTKGQDRLRRHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSLKCFP--DWEWYNVRIFETQD 93 (162)
T ss_dssp HHHHHHHHHHHHHC--GGGGGGGGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHHHHST--T-EEEEEEEEEBSS
T ss_pred HHHhhHHHHHHHHHcCchhhhhhheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHHHHCC--CcEEEEEEeecccC
Confidence 345677889999998888888899999988654 677777888889999999984 34443 33 35555555555544
Q ss_pred -CcEEEEEEEEEEc--CCCC----cccEEEEEEee
Q 012356 89 -KGVIVLVTGCLTG--KDNV----KKKFTQTFFLA 116 (465)
Q Consensus 89 -~~i~v~V~G~~~~--~~~~----~~~F~q~F~L~ 116 (465)
+.+.|-+-|.=++ .+-+ .-+|.|+|.|.
T Consensus 94 P~~fwVEcdG~G~i~fpGypeg~y~NHfiHsFel~ 128 (162)
T PF03284_consen 94 PNHFWVECDGRGKILFPGYPEGYYENHFIHSFELE 128 (162)
T ss_dssp TTEEEEEEEEEEEE--TTS--EEEEEEEEEEEEEE
T ss_pred CCEEEEEecCccceecCCCCcccceeeeEEEEEee
Confidence 5577777776554 3322 36799999994
No 162
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.03 E-value=10 Score=28.67 Aligned_cols=54 Identities=7% Similarity=0.119 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEE
Q 012356 313 TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADV 374 (465)
Q Consensus 313 ~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~V 374 (465)
.++.++++..+..|+-.. |..++ .| -||.|.+..+|+++.... +..+...+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999997543 44443 24 589999999999999998 77776666654
No 163
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=77.82 E-value=1.1 Score=44.06 Aligned_cols=76 Identities=13% Similarity=0.066 Sum_probs=59.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+++|++++.+.+.+.++..++..+|.+....+....+. .+++++++.|...+.+..+|... ...+.++.+....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 4689999999999999999999999997766544443333 78899999999999999999988 4455555544433
No 164
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=76.19 E-value=5.9 Score=36.28 Aligned_cols=10 Identities=40% Similarity=0.288 Sum_probs=5.3
Q ss_pred CEEEEcCCCC
Q 012356 303 CSIYVRNLAF 312 (465)
Q Consensus 303 ~~lfV~nLp~ 312 (465)
+-+.|++|-.
T Consensus 6 ~V~LiGrLg~ 15 (182)
T PRK06958 6 KVILVGNLGA 15 (182)
T ss_pred EEEEEEEecC
Confidence 4455666643
No 165
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.89 E-value=11 Score=36.45 Aligned_cols=52 Identities=12% Similarity=0.124 Sum_probs=37.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChH
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPG 354 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~ 354 (465)
..-.+-||++||+.++...||+..+.+.+.+. ..|.+. ..++-||+.|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk---g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK---GHFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCc-eeEeee---cCCcceeEecCCcc
Confidence 33456799999999999999999999877643 123222 23466899998643
No 166
>PF12287 Caprin-1_C: Cytoplasmic activation/proliferation-associated protein-1 C term; InterPro: IPR022070 This family of proteins is found in eukaryotes. Proteins in this family are typically between 343 and 708 amino acids in length. This family is the C-terminal region of caprin-1. Caprin-1 is a protein involved in regulating cellular proliferation. In mutated phenotypes, the G1 phase of the cell cycle is greatly lengthened, impairing normal proliferation. The C-terminal region of caprin-1 contains RGG motifs which are characteristic of RNA binding domains. It is possible that caprin-1 functions through an RNA binding mechanism.
Probab=75.52 E-value=7.1 Score=38.25 Aligned_cols=15 Identities=47% Similarity=0.802 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCCCC
Q 012356 444 ANQNGNRRGGPQGGV 458 (465)
Q Consensus 444 g~~~~~~~g~~~~~~ 458 (465)
||+..+-||+..|+|
T Consensus 302 gyQq~yKRG~~~g~r 316 (316)
T PF12287_consen 302 GYQQNYKRGGTQGGR 316 (316)
T ss_pred chhhhhhccCCCCCC
Confidence 388788888888776
No 167
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=74.22 E-value=17 Score=31.58 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=61.8
Q ss_pred cCcchhcccccCCceeeec-CCCCcccchhhHHHHHHHHhcCC-CCcceEEEeeeeeeeeCCCcEEEEEEEEEEcCC---
Q 012356 29 QSPGLVHRFYQDSSLLSRP-DSNGSMTTVTTMKAINDRILSLN-YEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKD--- 103 (465)
Q Consensus 29 ~~p~~l~~fY~~~s~~~~~-~~~~~~~~~~g~~~I~~~~~~l~-~~~~~~~i~~~d~q~s~~~~i~v~V~G~~~~~~--- 103 (465)
.+-+.|..||.+...+.-. +. ...|.++|.+.+.-.- .....++.+..+-|-.-. |=+..|++.+....
T Consensus 26 ~D~~av~~~YtdDav~f~~~~~-----~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~-GD~a~~~~~~~~~~~~~ 99 (137)
T COG4319 26 KDADAVADFYTDDAVVFPPPGL-----QRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHES-GDVAFVTALLLLTGTKK 99 (137)
T ss_pred ccHHHHHHhcCCceEEecCCCC-----cccCHHHHHHHHHHHHHhccCCCcceeeeeeeecc-CCEEEEEEeeeeeccCC
Confidence 6778899999999876544 44 5889999999886431 112244444555553332 34456666665432
Q ss_pred -CCc--ccEEEEEEeeecCCCcEEEEcc
Q 012356 104 -NVK--KKFTQTFFLAPQDKGGYFVLND 128 (465)
Q Consensus 104 -~~~--~~F~q~F~L~~~~~~~y~v~nD 128 (465)
.+. ...-=|.+|.++.+|+|+|..|
T Consensus 100 dg~~~~~~~Rat~v~rK~~dg~Wk~~~d 127 (137)
T COG4319 100 DGPPADLAGRATYVFRKEADGGWKLAHD 127 (137)
T ss_pred CCcchhheeeeEEEEEEcCCCCEEEEEe
Confidence 222 4456688888888889999988
No 168
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=70.79 E-value=42 Score=28.09 Aligned_cols=66 Identities=12% Similarity=0.002 Sum_probs=45.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccC-CeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGD 369 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g 369 (465)
...+.+...|+.++.++|..+...+- .|..++|. ++. .++..+.+.|.+.+.|..-.+.+ |+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~rii--rd~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRII--RDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEe--eCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34455556677777777876666553 45554443 333 46778999999999999998888 777753
No 169
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=66.87 E-value=32 Score=28.35 Aligned_cols=66 Identities=8% Similarity=0.119 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeeee
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQ 84 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~q 84 (465)
..++..|...++ .+.+.+..+|.++..+.+.+.. ...+.|.++|.+.+... .+..+.|.+.+....
T Consensus 10 ~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~--~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~ 78 (127)
T PF13577_consen 10 RDLIARYARALDTGDWEEWADLFTEDAVFDFPGFG--FGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVD 78 (127)
T ss_dssp HHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTC--EEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCcc--ccccCCHHHHHHHHHHhcccccceeEEccceEEE
Confidence 456777777777 7889999999999988776521 12578999999998764 223445555554433
No 170
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=65.66 E-value=21 Score=32.83 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=40.4
Q ss_pred CHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCC---CcccccceEEeecccc
Q 012356 315 TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASP---ILIGDRPADVEAKRAN 380 (465)
Q Consensus 315 te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~---~~i~g~~i~Ve~~r~~ 380 (465)
..+.|+++|..++.+..+.+ +. +.+-..|.|.+.+.|.+|...+. ..|.|..|+|-+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LK----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ET----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEE-cC----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998877433 22 22347999999999999999864 6789999999877543
No 171
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=64.85 E-value=91 Score=26.80 Aligned_cols=111 Identities=12% Similarity=0.031 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhhccCcchhcccccCC-ceeeecCCCCcccchhhHHHHHHHHhc---CCCCcceEEEeeeeeeeeCC
Q 012356 13 QVVGNAFVEQYYHILHQSPGLVHRFYQDS-SLLSRPDSNGSMTTVTTMKAINDRILS---LNYEDYTAEIKTADAQDSYE 88 (465)
Q Consensus 13 ~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~-s~~~~~~~~~~~~~~~g~~~I~~~~~~---l~~~~~~~~i~~~d~q~s~~ 88 (465)
++|..-|-+.==.+-..+++...++|.++ ++|.+.-.+ ....|.+.|...+.. ......+..|.+-..|-..+
T Consensus 3 ~eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~---~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~ 79 (128)
T PF08332_consen 3 QEIAALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVSN---QLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGD 79 (128)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGTT---SEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEEST
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccCC---ceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCC
Confidence 46666664443444448999999999999 888765432 156799999987763 33345556677766666556
Q ss_pred CcEEEEEEEEEEcCC--CCc--ccEEEEEEeeecCCCcEEEEc
Q 012356 89 KGVIVLVTGCLTGKD--NVK--KKFTQTFFLAPQDKGGYFVLN 127 (465)
Q Consensus 89 ~~i~v~V~G~~~~~~--~~~--~~F~q~F~L~~~~~~~y~v~n 127 (465)
+..++.=+=.++..+ ... ..---||+....++ .|.|.+
T Consensus 80 ~~Ai~~gvy~f~~~d~~G~~~~~~areT~v~~~~~g-~W~ivh 121 (128)
T PF08332_consen 80 NAAIDAGVYTFQFVDKDGVPRTVQARETRVWQKRDG-KWKIVH 121 (128)
T ss_dssp TEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEEETT-EEEEEE
T ss_pred CEEEEeeEEEEEeecCCCCeeeEEEeEEEEEEEeCC-eEEEEE
Confidence 555544444444432 222 23455777777776 888865
No 172
>PF15601 Imm42: Immunity protein 42
Probab=63.21 E-value=4 Score=35.33 Aligned_cols=67 Identities=10% Similarity=0.288 Sum_probs=47.8
Q ss_pred HHHHHHHHhhc----------cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeC
Q 012356 18 AFVEQYYHILH----------QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSY 87 (465)
Q Consensus 18 ~Fv~~YY~~l~----------~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~ 87 (465)
.|+..||.++. +-|-.|.+||...=...-.. ....-+++|.+.|..++..+....|..++.||.+
T Consensus 16 dfl~sFFsti~~~lE~~~wGskfP~Lm~~LY~g~L~~~~~~-----~A~~eL~~I~~~l~~~~p~~ViWD~~dl~~~ppW 90 (134)
T PF15601_consen 16 DFLHSFFSTISYRLENEGWGSKFPLLMNELYRGYLRYEELE-----KALKELEEIRKELKKFPPSEVIWDIEDLSKQPPW 90 (134)
T ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHHHcCCCCHHHHH-----HHHHHHHHHHHHHhcCChhhheechhhcccCCCC
Confidence 57777777766 33666777776542222111 1456678999999999999989999999999998
Q ss_pred CC
Q 012356 88 EK 89 (465)
Q Consensus 88 ~~ 89 (465)
++
T Consensus 91 g~ 92 (134)
T PF15601_consen 91 GD 92 (134)
T ss_pred cc
Confidence 54
No 173
>COG4907 Predicted membrane protein [Function unknown]
Probab=60.93 E-value=15 Score=38.04 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=22.2
Q ss_pred EEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEee
Q 012356 92 IVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132 (465)
Q Consensus 92 ~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~ 132 (465)
.|--.|.+....+..+-|--++.| .. .|+|+||+=.|
T Consensus 104 gv~~ig~~~~~~~e~~tf~~vy~~---~~-aikV~ndV~~f 140 (595)
T COG4907 104 GVYRIGLYSKNYNEVRTFKFVYTL---PE-AIKVYNDVAQF 140 (595)
T ss_pred eEEEeccccCCCccceEEEeeeec---cc-eEEEechHHHh
Confidence 344556665554455545444444 33 89999999644
No 174
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=56.58 E-value=16 Score=38.65 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=46.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHh-ccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCc---cccc-ceEE
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFK-IFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PIL---IGDR-PADV 374 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~---i~g~-~i~V 374 (465)
.+++.|+|++...|-..|.+.-. ..|.-..+.+.+|-.+ ...|||||.|-+++++..+.++. ++. |+++ .+.|
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~i 467 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASI 467 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeee
Confidence 35555666665555555444422 2344334444444333 56799999999999999999988 654 3433 3456
Q ss_pred eeccc
Q 012356 375 EAKRA 379 (465)
Q Consensus 375 e~~r~ 379 (465)
.+++-
T Consensus 468 tYArI 472 (549)
T KOG4660|consen 468 TYARI 472 (549)
T ss_pred ehhhh
Confidence 66653
No 175
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=56.51 E-value=1.5e+02 Score=32.22 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=5.1
Q ss_pred HHHHHhccCCe
Q 012356 319 LEEAFKIFGPI 329 (465)
Q Consensus 319 L~~~F~~~G~i 329 (465)
+..+....|..
T Consensus 338 ~~~yvqRiGRa 348 (572)
T PRK04537 338 AEDYVHRIGRT 348 (572)
T ss_pred HHHHhhhhccc
Confidence 33444555543
No 176
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=56.50 E-value=68 Score=26.66 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=39.5
Q ss_pred HHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeeee
Q 012356 22 QYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQ 84 (465)
Q Consensus 22 ~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~q 84 (465)
.|+..++ .+.+.|..||+++..+...+. ....|.+++.+.+..+ -|.+.++.|..+-+.
T Consensus 6 ~~~~~~n~~d~~~~~~~~~~d~~~~~~~~----~~~~G~~~~~~~~~~~~~afPD~~~~i~~~~~~ 67 (126)
T PF07366_consen 6 FYEEVWNRGDLDALDELVAPDVVFHDPGP----GPPVGREGFKEFLKELRAAFPDLRFEIEDVVAE 67 (126)
T ss_dssp HHHHHHHTT-GCHHHGTEEEEEEEEGCTT----TEEEHHHHHHHHHHHHHHHSTTTEEEEEEEEEE
T ss_pred HHHHHHhCCCHHHHHHhcCCCEEEEecCC----CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEE
Confidence 3555656 579999999999988877653 1467777777766533 233778887766554
No 177
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=53.96 E-value=9.1 Score=42.47 Aligned_cols=75 Identities=20% Similarity=0.184 Sum_probs=60.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc--cccceEEeecc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI--GDRPADVEAKR 378 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i--~g~~i~Ve~~r 378 (465)
..+.++.|.+-+.+...|..+|.+||.+.+.... + .-.++.|+|.+.+.+-.|++++ |+++ .|-..+|.+++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r----~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTL-R----DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheec-c----cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3566677788888999999999999999874222 2 2347999999999999999999 7765 67788999998
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
.-+
T Consensus 373 ~~~ 375 (1007)
T KOG4574|consen 373 TLP 375 (1007)
T ss_pred ccc
Confidence 754
No 178
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.94 E-value=26 Score=26.03 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=16.9
Q ss_pred HHHHHHHhccCCeeEeEEEEc
Q 012356 317 TELEEAFKIFGPIKKNGVQVR 337 (465)
Q Consensus 317 ~~L~~~F~~~G~i~~~~v~~~ 337 (465)
.+||++|+..|.|.-+.|...
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 579999999999987655443
No 179
>PRK11901 hypothetical protein; Reviewed
Probab=53.12 E-value=1.7e+02 Score=29.26 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=40.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEE--EEeCChHHHHHHHHhCCCccc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGF--VAFETPGSVQSALEASPILIG 368 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaF--V~F~~~~~a~~Al~~~~~~i~ 368 (465)
...++|=|-.+. +++.|+.|..+++ +..+.|..........|.. =.|.+.++|++|+..|+..|.
T Consensus 243 ~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 243 ASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 445777666554 6888988888775 3333332211112234433 368899999999999966553
No 180
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=52.17 E-value=48 Score=26.56 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHHhh-ccCcchhcccccCCce-eeecCCCCcccchhhH----HHHHHHHhcCCCCcceEEEeeee
Q 012356 9 APSAQVVGNAFVEQYYHIL-HQSPGLVHRFYQDSSL-LSRPDSNGSMTTVTTM----KAINDRILSLNYEDYTAEIKTAD 82 (465)
Q Consensus 9 ~~~~~~Vg~~Fv~~YY~~l-~~~p~~l~~fY~~~s~-~~~~~~~~~~~~~~g~----~~I~~~~~~l~~~~~~~~i~~~d 82 (465)
..+|++|...| |..| +.+-+....|...... +...... ...-. ......+..+. .++|..+.
T Consensus 6 ~~~P~~~v~~f----~~al~~gd~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~v~ 73 (111)
T PF12870_consen 6 SSTPEEVVKNF----FDALKNGDYEKAYAYLSPESREPEKAKED----FEQFEKQFASEMKKKYKKIG----SIKIVEVE 73 (111)
T ss_dssp ---HHHHHHHH----HHHHCTT-HHHHHHTB--TT--SHHHHHH----HHHHHHHHHHHHHHHHHHTT----SEEEEEEE
T ss_pred CCCHHHHHHHH----HHHHHcCCHHHHHHhhCccccchhHHHHH----HHHHHHHHHHHHHHhhhccC----ceEEEEEE
Confidence 44788886665 4443 3667777777665433 1111000 01111 12222222211 34444444
Q ss_pred eeeeCCCcEEEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEE
Q 012356 83 AQDSYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFV 125 (465)
Q Consensus 83 ~q~s~~~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v 125 (465)
-... ++-..| +-.+...+.....| +|.|...++ .|+|
T Consensus 74 ~~~~-g~~A~V--~v~~~~~~g~~~~~--~~~lvk~dg-~Wkv 110 (111)
T PF12870_consen 74 ENTI-GDTATV--TVKITYKDGKEKTF--TVPLVKEDG-KWKV 110 (111)
T ss_dssp EEEE-SSEEEE--EEEEEETTS-EEEE--EEEEEEETT-EEEE
T ss_pred Eecc-CCEEEE--EEEEEECCCCeeEE--EEEEEEECC-EEEe
Confidence 3333 333444 44455555444443 677877665 9988
No 181
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=51.85 E-value=16 Score=28.88 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=39.2
Q ss_pred HHhhccCcchhcccccCCc-eeeecCCCCcccchhhHHHHHHHHhcCC
Q 012356 24 YHILHQSPGLVHRFYQDSS-LLSRPDSNGSMTTVTTMKAINDRILSLN 70 (465)
Q Consensus 24 Y~~l~~~p~~l~~fY~~~s-~~~~~~~~~~~~~~~g~~~I~~~~~~l~ 70 (465)
|+.|.+.-..|.+|..+.. +|.|.|++|..-++..++++.+.|.-+.
T Consensus 22 ~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 22 LEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYE 69 (83)
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHH
Confidence 6677777788999998865 7999999999888899999999886544
No 182
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=49.68 E-value=64 Score=35.98 Aligned_cols=29 Identities=21% Similarity=0.095 Sum_probs=19.8
Q ss_pred hhHHHHHHHHhcC---C-CC-cceEEEeeeeeee
Q 012356 57 TTMKAINDRILSL---N-YE-DYTAEIKTADAQD 85 (465)
Q Consensus 57 ~g~~~I~~~~~~l---~-~~-~~~~~i~~~d~q~ 85 (465)
.|-..|+.+|-+. | +. +.+|+|..+|+--
T Consensus 203 EGEHKIM~yIR~QR~~P~~dPNT~HclyGlDADL 236 (931)
T KOG2044|consen 203 EGEHKIMSYIRSQRAQPGYDPNTHHCLYGLDADL 236 (931)
T ss_pred cchhHHHHHHHHccCCCCCCCCceeeeecCCccc
Confidence 4778899988643 2 21 5688888887754
No 183
>smart00593 RUN domain involved in Ras-like GTPase signaling.
Probab=48.18 E-value=16 Score=27.16 Aligned_cols=44 Identities=14% Similarity=0.390 Sum_probs=32.3
Q ss_pred HHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC
Q 012356 18 AFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (465)
Q Consensus 18 ~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~ 70 (465)
.-+.+|.+.|..+.+.+.+||.+.|.|.-. .+.+.+...|..|.
T Consensus 12 ~~L~~~l~~l~~~~~~~~~~Y~~~A~l~~~---------~~~~~l~~~L~~L~ 55 (64)
T smart00593 12 KLLSSWLNLLLSDEELLSKYYEPWAFLRDP---------EEGEQLLGLLVGLS 55 (64)
T ss_pred hHHHHHHHHHHhChHHHHHhCCCCceeeCh---------hHHHHHHHHHhCcc
Confidence 345788988998999999999999988632 23445666666553
No 184
>PF12343 DEADboxA: Cold shock protein DEAD box A; InterPro: IPR021046 This domain family is found in bacteria, and is typically between 68 and 89 amino acids in length. The family is found in association with PF00270 from PFAM, PF00271 from PFAM, PF03880 from PFAM. This family is the C-terminal region of DEAD box A, a protein expressed under conditions of cold shock which is involved in various cellular processes such as transcription, translation and DA recombination []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=47.03 E-value=55 Score=23.86 Aligned_cols=13 Identities=8% Similarity=0.230 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCC
Q 012356 452 GGPQGGVNRNSVT 464 (465)
Q Consensus 452 g~~~~~~~~~~~~ 464 (465)
.+.+++|+..+++
T Consensus 41 dg~raPRRdd~a~ 53 (63)
T PF12343_consen 41 DGQRAPRRDDAAA 53 (63)
T ss_pred ccCcCCcccccCC
Confidence 3445666655543
No 185
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=43.42 E-value=46 Score=28.07 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=26.4
Q ss_pred CHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCC-hHHHHHHHHh
Q 012356 315 TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFET-PGSVQSALEA 362 (465)
Q Consensus 315 te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~-~~~a~~Al~~ 362 (465)
+.++|++.|+.|..++. ...... ....+++.|+|.. -.....|+..
T Consensus 30 ~~~~l~~~l~~f~p~kv-~~l~~~-~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLKV-KPLYGK-QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -SHHHHHHHHH---SEE-EEEEET-TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCcee-EECcCC-CCCcEEEEEEECCChHHHHHHHHH
Confidence 55789999999988864 333322 2467899999985 4555556544
No 186
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=41.84 E-value=4.9 Score=40.57 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=50.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIG 368 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~ 368 (465)
..+|+|++|+..+...++-.+|..+|.|....+.-. ....+|-++|........||...+..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASK---SRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---CCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 378999999999999999999999999876444222 2234677999999999999988766654
No 187
>COG4907 Predicted membrane protein [Function unknown]
Probab=41.33 E-value=24 Score=36.71 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=6.1
Q ss_pred cEEEEcceEeeec
Q 012356 122 GYFVLNDVFRFVE 134 (465)
Q Consensus 122 ~y~v~nDifr~~~ 134 (465)
+|+-.-|++.+-+
T Consensus 104 gv~~ig~~~~~~~ 116 (595)
T COG4907 104 GVYRIGLYSKNYN 116 (595)
T ss_pred eEEEeccccCCCc
Confidence 4555555544333
No 188
>KOG2044 consensus 5'-3' exonuclease HKE1/RAT1 [Replication, recombination and repair; RNA processing and modification]
Probab=40.87 E-value=82 Score=35.19 Aligned_cols=24 Identities=0% Similarity=-0.125 Sum_probs=14.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIF 326 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~ 326 (465)
....|||.+-... .+-++++.++.
T Consensus 666 g~d~Lfi~~~hp~--~e~i~~lysk~ 689 (931)
T KOG2044|consen 666 GPDLLFISDKHPL--FEFILQLYSKK 689 (931)
T ss_pred CCceEEecCCCch--HHHHHHHHHhh
Confidence 3467888754433 35566666654
No 189
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.81 E-value=1.1e+02 Score=33.02 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=55.1
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHhcc----CCeeEeEEEEcc-------------C-----------------------
Q 012356 301 EGCSIYVRNLAFT-TTSTELEEAFKIF----GPIKKNGVQVRS-------------N----------------------- 339 (465)
Q Consensus 301 ~~~~lfV~nLp~~-~te~~L~~~F~~~----G~i~~~~v~~~~-------------~----------------------- 339 (465)
..++|-|-||.|+ +...+|.-+|..| |.|.+|.|-... .
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3589999999996 7888999999865 577776653211 0
Q ss_pred ------C-----C-cceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 340 ------K-----Q-GYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 340 ------~-----~-~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
+ + ..-||.|+|.+.+.|.+..+.+ |+.+......+.
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 0 1 1247999999999999999999 998865544444
No 190
>PF12642 TpcC: Conjugative transposon protein TcpC; InterPro: IPR024735 This family of bacterial proteins are annotated as conjugative transposon protein TcpC. The transfer clostridial plasmid (tcp) locus is part of some conjugative antibiotic resistance and virulence plasmids. TcpC was one of five genes whose products had low-level sequence identity to Tn916 proteins, having similarity to ORF13 homologues from Tn916, Tn5397, and CW459tet [].; PDB: 3UB1_A.
Probab=40.33 E-value=78 Score=29.76 Aligned_cols=89 Identities=20% Similarity=0.362 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhccCc-chhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEE
Q 012356 14 VVGNAFVEQYYHILHQSP-GLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 14 ~Vg~~Fv~~YY~~l~~~p-~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i~ 92 (465)
.--..|+..|++.+-..- ++|.+|..+.+.+...+. . +. -.+|..+..-...++. .
T Consensus 140 ~~i~~fl~~Ff~aY~t~~~~~L~~y~~~~~~~~l~~~---~-----------------~~--~~~v~~~~~~~~~~~~-~ 196 (232)
T PF12642_consen 140 KPIEEFLEQFFKAYLTGNQGDLSYYMKPGAIIGLNGA---P-----------------YK--FVKVDDIKVYKTKDKG-R 196 (232)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHTTB-TT-----------------------------SE--EEEEEEEEEEEEETTE-E
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCcccccCCC---c-----------------eE--EEeeeeEEeecCCCCc-E
Confidence 456789999999986554 889988887776522111 0 00 1455555444444443 3
Q ss_pred EEEEEEEEcCCC-CcccEEEEEEeeecCC-CcEEEE
Q 012356 93 VLVTGCLTGKDN-VKKKFTQTFFLAPQDK-GGYFVL 126 (465)
Q Consensus 93 v~V~G~~~~~~~-~~~~F~q~F~L~~~~~-~~y~v~ 126 (465)
+.|. .++..+. ......|+|.|.-... ++|||.
T Consensus 197 ~~v~-tVt~~~~~t~~~~~~~y~LtL~~~~~~w~V~ 231 (232)
T PF12642_consen 197 VVVQ-TVTFKDPGTKATLTQQYTLTLTKRGGRWYVT 231 (232)
T ss_dssp EEE---EEEEEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EEEE-EEEEEECCCCcEEEEEEEEEEEEcCCEEEEe
Confidence 3332 3443332 2456777777765332 499985
No 191
>PF02759 RUN: RUN domain; InterPro: IPR004012 This domain is present in several proteins that are linked to the functions of GTPases in the Rap and Rab families. They could therefore play important roles in multiple Ras-like GTPase signalling pathways.; PDB: 3CWZ_B 2CXF_A 2DWK_A 2DWG_A 2CXL_A.
Probab=40.25 E-value=13 Score=31.54 Aligned_cols=37 Identities=19% Similarity=0.503 Sum_probs=27.8
Q ss_pred HHHHHHHHHH---------HHHHhhccCcchhcccccCCceeeecC
Q 012356 12 AQVVGNAFVE---------QYYHILHQSPGLVHRFYQDSSLLSRPD 48 (465)
Q Consensus 12 ~~~Vg~~Fv~---------~YY~~l~~~p~~l~~fY~~~s~~~~~~ 48 (465)
...-++.||+ +|...|..+++.|.+||.+.|.|.-.+
T Consensus 65 ~~gk~ra~Ir~aLn~~~L~~~l~~l~~~~~~l~~~Y~~~A~l~~~~ 110 (133)
T PF02759_consen 65 SDGKFRAWIRLALNEKCLSSWLQLLLSDPKLLRKYYEPWAFLRDPE 110 (133)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHCTTHHHHCCCB-TTSCTTSHH
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHHhcchHHcCccCCcceeeCcc
Confidence 3566667764 688889999999999999999886443
No 192
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=39.57 E-value=50 Score=32.31 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=7.1
Q ss_pred HHHHHHHHhcCC
Q 012356 59 MKAINDRILSLN 70 (465)
Q Consensus 59 ~~~I~~~~~~l~ 70 (465)
+.+|..+|..|-
T Consensus 48 ~~~Leq~l~~L~ 59 (271)
T COG1512 48 RGALEQQLADLE 59 (271)
T ss_pred HHHHHHHHHHHH
Confidence 456666666554
No 193
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.26 E-value=58 Score=33.25 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=44.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHh
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEA 362 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~ 362 (465)
.+-|=|-++|.....+||..+|..|+. +.++|.+-.++ ++|-.|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc----eeEEeecchHHHHHHhhc
Confidence 377888899999889999999999975 33455554444 799999999999888765
No 194
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=36.13 E-value=66 Score=24.50 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=39.3
Q ss_pred HHHHHHHhccC-CeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 317 TELEEAFKIFG-PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 317 ~~L~~~F~~~G-~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.+|++.|...| .++.+..++..+. .....-||+.....+... .+ -..|++++|.||....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46788888887 4566555555554 445677888876554443 23 3567889999987654
No 195
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=36.07 E-value=2.3e+02 Score=28.21 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 13 QVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 13 ~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
.+.-...|+.||..|+ .+.+.|..++.++..+.+... ...+.|.++|..++..+
T Consensus 213 ~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~---~~~~~G~~~v~~~~~~~ 267 (339)
T PRK08241 213 DPEERALLARYVAAFEAYDVDALVALLTEDATWSMPPF---PLWYRGRDAIAAFLAGQ 267 (339)
T ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCC---CCcccCHHHHHHHHHhh
Confidence 3556677889999988 688999999999987776533 22489999999999875
No 196
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=36.00 E-value=1.3e+02 Score=21.46 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=39.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCCh----HHHHHHHHhCCC
Q 012356 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETP----GSVQSALEASPI 365 (465)
Q Consensus 304 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~----~~a~~Al~~~~~ 365 (465)
++.|.||.-.--...|++.+...-.|..+.+.+.. +-.-|.|... +.+.++|+..|.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~-----~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET-----KTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT-----TEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC-----CEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 46677776655677899999998888886665443 3477888743 567777776553
No 197
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=34.34 E-value=2.6e+02 Score=24.15 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCc-ccchhhHHHHHHHHhcCC--CCcceEEEeeeeee
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGS-MTTVTTMKAINDRILSLN--YEDYTAEIKTADAQ 84 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~-~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d~q 84 (465)
.+.-|++||..|. -.-+.|..++.++-...+.+..-. .+...|.+.+...+..++ +..+.+.+..+.+.
T Consensus 6 ~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 78 (133)
T COG3631 6 NTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVS 78 (133)
T ss_pred hhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEc
Confidence 3567889999988 667888889999887777765422 222345555566666554 32445555554444
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.21 E-value=1.8e+02 Score=30.39 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=52.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcc-CCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIF-GPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGD 369 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g 369 (465)
++.|+|=-+|..++-.||-.|...+ -.|.+++|.. +. -.+-...|.|.+.++|..-.+.+ |..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR--d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR--DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee--cCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7899999999999999999998754 4566655554 34 45667899999999999999888 887753
No 199
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=31.27 E-value=76 Score=24.00 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=36.9
Q ss_pred HHHHHHHhccC-CeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 317 TELEEAFKIFG-PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 317 ~~L~~~F~~~G-~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
++|++.|...| .|..+.-+....+ ..-...||+++...+... .+ =..|++..|+||..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46778888777 3444333333322 444678888887655333 23 34578888999876643
No 200
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=30.33 E-value=2.4e+02 Score=31.75 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=10.1
Q ss_pred HHHHhhccCcchhc
Q 012356 22 QYYHILHQSPGLVH 35 (465)
Q Consensus 22 ~YY~~l~~~p~~l~ 35 (465)
|+.+.|.++|++|.
T Consensus 310 q~INal~t~p~dld 323 (1102)
T KOG1924|consen 310 QFINALVTSPSDLD 323 (1102)
T ss_pred HHHHHhcCCHHHhh
Confidence 47778888887753
No 201
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=30.22 E-value=1e+02 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=26.3
Q ss_pred CceeeecCCCCcccchhhHHHHHHHHhcCC
Q 012356 41 SSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (465)
Q Consensus 41 ~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~ 70 (465)
.=+|.|.|.+|..-+.+.++++...+.+++
T Consensus 47 ~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 47 NFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred cEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 347899999999888899999999999886
No 202
>COG5073 VID24 Vacuolar import and degradation protein [Intracellular trafficking and secretion]
Probab=29.93 E-value=20 Score=33.95 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=54.7
Q ss_pred HHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEEEEE
Q 012356 19 FVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTGC 98 (465)
Q Consensus 19 Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i~v~V~G~ 98 (465)
-|..||..-.+++..+...|...+.+.++|. .+.|.. |..++.-...++|.+||-+-..+- -|=+++|+
T Consensus 53 ~ve~~~~~~~kn~~~~~~s~~~~~~~Lr~G~-----qF~G~Q-----is~~~~~~v~v~i~~Vdl~~kd~~-sl~~l~G~ 121 (272)
T COG5073 53 KVETYYMIRHKNKRRLFSSYTRRSGFLRNGA-----QFGGVQ-----ISGYPPLTVEVNIDTVDLPKKDDY-SLPHLCGT 121 (272)
T ss_pred eEeecceecccCceEeeeeccchhhhccCcc-----ccccEe-----ccCCcceEEEEEEEEEeccccccc-cccceeeE
Confidence 3667888888999999999988777888887 567765 444554457889999999883332 34788999
Q ss_pred EEcCC
Q 012356 99 LTGKD 103 (465)
Q Consensus 99 ~~~~~ 103 (465)
|.+..
T Consensus 122 l~i~~ 126 (272)
T COG5073 122 LNIQN 126 (272)
T ss_pred EEEec
Confidence 88654
No 203
>PRK10905 cell division protein DamX; Validated
Probab=29.61 E-value=4.9e+02 Score=26.06 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcc-eEE--EEEeCChHHHHHHHHhCCCccc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGY-CFG--FVAFETPGSVQSALEASPILIG 368 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~-gfa--FV~F~~~~~a~~Al~~~~~~i~ 368 (465)
...++|=|.-+. +.+.|+.|..++|- ....+.... ...+ .|- +=.|.+.++|++||..|+..|.
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~Tt-RnGkpWYVV~yG~YaSraeAk~AiakLPa~vQ 311 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETT-RNGQPWYVLVSGVYASKEEAKRAVSTLPADVQ 311 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEec-cCCceEEEEEecCCCCHHHHHHHHHHCCHHHH
Confidence 345777777665 77888888888753 322222211 1222 333 3368899999999999976663
No 204
>PF08863 YolD: YolD-like protein; InterPro: IPR014962 These proteins are functionally uncharacterised. However it has been predicted that these proteins are functionally equivalent to the UmuD subunit of polymerase V from Gram-negative bacteria [].
Probab=28.40 E-value=1.3e+02 Score=23.48 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=45.1
Q ss_pred cchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEEEEEEEcCCCCcccEE
Q 012356 31 PGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVTGCLTGKDNVKKKFT 110 (465)
Q Consensus 31 p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i~v~V~G~~~~~~~~~~~F~ 110 (465)
.+.|++++.+...+.....+ -.-.++|..+|+..--.++.+.|+..+ +|-+..++|.|..-+. ..
T Consensus 5 ~e~L~~~~~e~~k~~kp~Ld-----e~~leei~~~l~~a~~~~~~v~ity~~------~g~~~~~~G~I~~id~----~~ 69 (92)
T PF08863_consen 5 KEALRELIKEQNKVEKPELD-----EQQLEEINEKLSEAYQENQPVTITYYE------DGYYQSVTGTIHKIDE----IN 69 (92)
T ss_pred HHHHHHHHHHhcccCCCCCc-----HHHHHHHHHHHHHHhcCCCEEEEEEEE------CCeeEEEEEEEEEEcC----CC
Confidence 45666666666555544331 345678888886433235677776654 7789999999986442 23
Q ss_pred EEEEeee
Q 012356 111 QTFFLAP 117 (465)
Q Consensus 111 q~F~L~~ 117 (465)
+++.|..
T Consensus 70 ~~l~~~~ 76 (92)
T PF08863_consen 70 RTLKLKD 76 (92)
T ss_pred CEEEEEe
Confidence 4556655
No 205
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=27.62 E-value=2.9e+02 Score=27.17 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
.-..-|++||..++ .+.+.|..++.++.++...-. ...+.|.+.|...+..+
T Consensus 205 ~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~---~~~~~G~~~v~~~~~~~ 257 (324)
T TIGR02960 205 EEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPY---TLWYQGRPAIVGFIHTV 257 (324)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCC---CcceeCHHHHHHHHHHh
Confidence 34678999999998 789999999999988775522 12588999999999876
No 206
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=27.61 E-value=1e+02 Score=34.30 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=5.8
Q ss_pred hHHHHHHHHhcC
Q 012356 58 TMKAINDRILSL 69 (465)
Q Consensus 58 g~~~I~~~~~~l 69 (465)
.+.++..+|.++
T Consensus 434 ~e~dL~~~feef 445 (894)
T KOG0132|consen 434 TEQDLANLFEEF 445 (894)
T ss_pred hHHHHHHHHHhc
Confidence 344555555543
No 207
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=26.87 E-value=4.1e+02 Score=22.79 Aligned_cols=114 Identities=10% Similarity=0.048 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcE
Q 012356 12 AQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGV 91 (465)
Q Consensus 12 ~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i 91 (465)
..+|-..|-+.+--++.++-+.|..|+-++..-.+-|-. ....|.++|..+-..-+-..-...|..+.......+ +
T Consensus 9 ~aev~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~~---E~LyG~~aI~aFR~~R~~~~~~R~l~~~~itt~G~d-~ 84 (125)
T PF11533_consen 9 VAEVTAAFDRYERALMANDVDALDALFWDDPRTVRYGAG---ENLYGHDAIRAFRAARPGGGPARTLERTVITTFGRD-F 84 (125)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEETT---EEEESHHHHHHHHHHS--TTTT-EEEEEEEEEETTT-E
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECCC---ccccCHHHHHHHHhcCCCCCCCcEEEEEEEEEecCc-e
Confidence 456777886655556667789999998877544443321 257999999999987765544556666666655554 2
Q ss_pred EEEEEEEEEcCCCCc-ccEEEEEEeeecCCCcEEEEcceEeee
Q 012356 92 IVLVTGCLTGKDNVK-KKFTQTFFLAPQDKGGYFVLNDVFRFV 133 (465)
Q Consensus 92 ~v~V~G~~~~~~~~~-~~F~q~F~L~~~~~~~y~v~nDifr~~ 133 (465)
-+|+-++.-.+... =+=+|+++-. +. +|-|..--..++
T Consensus 85 -A~v~tef~r~~~~~~GRQsQtWvr~--~~-gWrIvaAHVS~~ 123 (125)
T PF11533_consen 85 -ATVSTEFRRDGSGRIGRQSQTWVRF--PD-GWRIVAAHVSLM 123 (125)
T ss_dssp -EEEEEEEEETTECCEEEEEEEEEEE--TT-EEEEEEEEEEEE
T ss_pred -EEEEEEEEECCCCceeEeEEEEEEC--CC-CEEEEEEEEeec
Confidence 23444455444332 2347777765 44 788876444433
No 208
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=26.63 E-value=1.9e+02 Score=29.05 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhccCcchh-cccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCc---EE
Q 012356 17 NAFVEQYYHILHQSPGLV-HRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKG---VI 92 (465)
Q Consensus 17 ~~Fv~~YY~~l~~~p~~l-~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~---i~ 92 (465)
..|-+.||..|+..=... ..||...=++...|. -.-.|.++.. .+-..|++++--...+|. .+
T Consensus 173 ~~F~~~dY~~l~~~f~~~~~~f~~~s~c~ik~G~--------~~R~viDf~~-----~~y~~Vk~I~Le~i~~n~~~P~i 239 (334)
T PF05941_consen 173 TIFTEEDYDALEAYFLKIMDGFYINSLCCIKEGV--------SRRNVIDFYK-----KEYVCVKSIELEQIGDNRFLPKI 239 (334)
T ss_pred cccchhHHHHHHHHHHhhhhcccceeEEEEecCc--------chhhhhhhcc-----cceEEEEEEEEEEecCCeeeeEE
Confidence 579999999999665554 677766667888775 1234555433 456677777777766665 44
Q ss_pred EEEEEEEE-cCC-C---CcccEEEEEEeeecCCCcEEEEcce
Q 012356 93 VLVTGCLT-GKD-N---VKKKFTQTFFLAPQDKGGYFVLNDV 129 (465)
Q Consensus 93 v~V~G~~~-~~~-~---~~~~F~q~F~L~~~~~~~y~v~nDi 129 (465)
|+-.|... .+| + ..+-+.-+|+....-+ .|.|+.|-
T Consensus 240 iT~~g~~vlvrdv~hLi~sr~~vgsFV~Vkkk~-~~~iL~d~ 280 (334)
T PF05941_consen 240 ITKSGDRVLVRDVDHLIRSRARVGSFVVVKKKK-NFLILVDN 280 (334)
T ss_pred EeecCCEEEEcchhHHhHhhhccceEEEEEEec-eEEEEccC
Confidence 55555433 333 1 2477889999988776 78888653
No 209
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.13 E-value=2.8e+02 Score=21.58 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=37.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCC
Q 012356 305 IYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASP 364 (465)
Q Consensus 305 lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~ 364 (465)
-|+-.++.+++..+|++.++.+=.|+-..|.........-=|||.+..-+.|.+.-..+|
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~g 75 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRLG 75 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhhc
Confidence 344457889999999999987433443334333222222349999998888777655443
No 210
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=26.02 E-value=1.6e+02 Score=31.54 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=5.3
Q ss_pred ccEEEEEEe
Q 012356 107 KKFTQTFFL 115 (465)
Q Consensus 107 ~~F~q~F~L 115 (465)
+.|+|-|.=
T Consensus 165 ~~l~qk~eD 173 (648)
T KOG2295|consen 165 RALYQKFED 173 (648)
T ss_pred HHHHHHhhh
Confidence 456666654
No 211
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.80 E-value=2.9e+02 Score=24.43 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=39.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcc---CCeeEeEEEEccCC----------Ccce-EEEEEeCChHHHH
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIF---GPIKKNGVQVRSNK----------QGYC-FGFVAFETPGSVQ 357 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~---G~i~~~~v~~~~~~----------~~~g-faFV~F~~~~~a~ 357 (465)
..+||+.-+...+++++.++..++- ++++.+.+-+..++ ..+. |-+|.|++-....
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~lk 156 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKELK 156 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhhh
Confidence 3899999999999999999998865 45555544433332 2234 8899999865443
No 212
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.62 E-value=2.6e+02 Score=22.10 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCC
Q 012356 309 NLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASP 364 (465)
Q Consensus 309 nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~ 364 (465)
.+..+++..+|++.++.+=.|+-..|.........-=|||.+..-+.|.+....+|
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~kig 82 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRLG 82 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhhc
Confidence 35788999999999987433433333332222222349999999888888765554
No 213
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=24.32 E-value=1.9e+02 Score=31.58 Aligned_cols=7 Identities=0% Similarity=0.026 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 012356 318 ELEEAFK 324 (465)
Q Consensus 318 ~L~~~F~ 324 (465)
++.+...
T Consensus 340 ~yvqRiG 346 (572)
T PRK04537 340 DYVHRIG 346 (572)
T ss_pred HHhhhhc
Confidence 3333333
No 214
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=23.43 E-value=20 Score=33.59 Aligned_cols=68 Identities=25% Similarity=0.328 Sum_probs=53.6
Q ss_pred CCCCEEEEcC----CCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc
Q 012356 300 AEGCSIYVRN----LAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI 367 (465)
Q Consensus 300 ~~~~~lfV~n----Lp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i 367 (465)
....+++-|+ |...++++.+...|+.-|.+..+.+..+.+.+.+.++|+++.-....-.++... ++.+
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 3446777777 777889999999999999999977777777678889999998777777777665 4443
No 215
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.92 E-value=4.3e+02 Score=29.89 Aligned_cols=14 Identities=21% Similarity=0.783 Sum_probs=7.5
Q ss_pred cEEEEcceEeeecc
Q 012356 122 GYFVLNDVFRFVEE 135 (465)
Q Consensus 122 ~y~v~nDifr~~~~ 135 (465)
-|||.-..+.+|++
T Consensus 417 Dy~~rpqYykLIEe 430 (1102)
T KOG1924|consen 417 DYYIRPQYYKLIEE 430 (1102)
T ss_pred hhhhhHHHHHHHHH
Confidence 45655555555543
No 216
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=20.70 E-value=94 Score=24.91 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=24.0
Q ss_pred EEEEeCChHHHHHHHHhC--CCcccccceEEee
Q 012356 346 GFVAFETPGSVQSALEAS--PILIGDRPADVEA 376 (465)
Q Consensus 346 aFV~F~~~~~a~~Al~~~--~~~i~g~~i~Ve~ 376 (465)
|.|+|.+..-|++.|+.- ...+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 689999999999998876 5566776666653
No 217
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=20.64 E-value=2.6e+02 Score=26.05 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhccCcchhcccccCCceeee-cCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEE
Q 012356 17 NAFVEQYYHILHQSPGLVHRFYQDSSLLSR-PDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLV 95 (465)
Q Consensus 17 ~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~-~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i~v~V 95 (465)
+.|..++...|.+-+ .....+++ -|. . ...-.+.|.++|. .+.++.++|..|.-.-...+ |.|
T Consensus 80 r~f~~e~~~~l~~l~-------~~~~~v~ivTG~---l-a~~~l~~~~~~l~--~~~~~~v~V~~V~N~fFG~~---ItV 143 (204)
T PF04459_consen 80 RLFLDEWEEALRKLP-------KKPRRVTIVTGV---L-AYPFLKPLVEKLN--RIPGLEVEVVPVKNRFFGGT---ITV 143 (204)
T ss_pred HHHHHHHHHHHhhcC-------CCCeeEEEEeeH---H-HHHHHHHHHHHHh--ccCCCeEEEEEeecCCCCCC---eEE
Confidence 457777777777644 22223333 222 0 1222344444442 33366666666554443444 899
Q ss_pred EEEEEcCC
Q 012356 96 TGCLTGKD 103 (465)
Q Consensus 96 ~G~~~~~~ 103 (465)
+|.|+..|
T Consensus 144 aGLLTg~D 151 (204)
T PF04459_consen 144 AGLLTGQD 151 (204)
T ss_pred eeCccHHH
Confidence 99999766
No 218
>PF06851 DUF1247: Protein of unknown function (DUF1247); InterPro: IPR009657 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf2; it is a family of uncharacterised viral proteins.
Probab=20.44 E-value=33 Score=29.76 Aligned_cols=42 Identities=31% Similarity=0.536 Sum_probs=29.6
Q ss_pred HHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCC
Q 012356 18 AFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYE 72 (465)
Q Consensus 18 ~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~ 72 (465)
+||+.||+.|.. .|+...+.+...+ .+|-+.|.++|.+-++.
T Consensus 93 S~VElYY~yLs~------~~wk~~a~~~l~d-------LTgF~s~~~LL~~Yny~ 134 (148)
T PF06851_consen 93 SFVELYYTYLSV------DFWKITAKRVLRD-------LTGFESLKDLLTHYNYE 134 (148)
T ss_pred hhHHHHHHHHcc------cccHHHHHHHHHH-------hhCcccHHHHHHHcCCC
Confidence 799999999985 3444455544443 46778888888877764
No 219
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=20.16 E-value=72 Score=26.24 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhccCcc
Q 012356 17 NAFVEQYYHILHQSPG 32 (465)
Q Consensus 17 ~~Fv~~YY~~l~~~p~ 32 (465)
-.||+.||..|+++|.
T Consensus 49 v~fvR~fy~ef~tsPa 64 (111)
T COG2920 49 VRFVREFYEEFNTSPA 64 (111)
T ss_pred HHHHHHHHHHHCCCch
Confidence 3699999999999885
Done!