Query 012356
Match_columns 465
No_of_seqs 461 out of 2654
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 07:51:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q90_A RAS GTPase-activating p 100.0 1.1E-38 3.6E-43 279.2 14.2 129 9-137 6-139 (140)
2 3ujm_A Rasputin; NTF2-like fol 100.0 2.1E-37 7.2E-42 263.9 11.8 118 11-133 2-120 (120)
3 1zo2_A NTF2, nuclear transport 100.0 1.2E-36 4.2E-41 262.4 14.3 123 8-135 7-129 (129)
4 1gy6_A Nuclear transport facto 100.0 1.8E-36 6.1E-41 260.7 13.4 123 9-137 4-126 (127)
5 1gy7_A Nuclear transport facto 100.0 6.3E-36 2.1E-40 256.6 13.6 119 11-135 4-124 (125)
6 2qiy_A UBP3-associated protein 100.0 4.3E-35 1.5E-39 260.7 13.9 129 9-137 8-151 (154)
7 3nv0_B NTF2-related export pro 100.0 5.9E-34 2E-38 251.6 13.8 116 11-134 32-154 (154)
8 1jkg_A P15; NTF2-like domain, 100.0 4.8E-32 1.6E-36 237.2 13.5 119 10-135 11-138 (140)
9 1jkg_B TAP; NTF2-like domain, 99.9 3.1E-21 1.1E-25 184.3 13.4 126 10-137 12-172 (250)
10 1of5_A MRNA export factor MEX6 99.8 5.1E-21 1.7E-25 177.8 10.0 125 10-137 8-205 (221)
11 1q40_B MEX67, mRNA export fact 99.8 3.5E-20 1.2E-24 172.2 11.8 126 10-137 11-211 (219)
12 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.7E-19 1.6E-23 157.6 12.2 83 300-382 37-121 (156)
13 3q2s_C Cleavage and polyadenyl 99.8 2.6E-19 8.7E-24 169.6 8.2 80 301-380 67-150 (229)
14 4fxv_A ELAV-like protein 1; RN 99.7 8.6E-18 2.9E-22 137.9 10.4 82 299-380 16-99 (99)
15 1u6f_A Tcubp1, RNA-binding pro 99.7 1.4E-16 4.8E-21 138.6 17.2 84 299-382 39-124 (139)
16 2fy1_A RNA-binding motif prote 99.7 2E-16 7E-21 133.5 13.8 83 300-382 5-88 (116)
17 3ex7_B RNA-binding protein 8A; 99.7 8.6E-17 2.9E-21 137.6 9.8 84 299-382 19-104 (126)
18 2dnz_A Probable RNA-binding pr 99.7 2.3E-16 8E-21 127.8 11.7 82 301-382 4-87 (95)
19 3nv0_A Nuclear RNA export fact 99.7 3.6E-16 1.2E-20 144.1 13.6 123 11-135 11-185 (205)
20 1x5u_A Splicing factor 3B subu 99.7 4.6E-16 1.6E-20 128.6 12.7 84 299-382 12-97 (105)
21 2cqd_A RNA-binding region cont 99.7 7.7E-16 2.6E-20 129.7 13.8 85 298-382 13-98 (116)
22 2cq0_A Eukaryotic translation 99.7 5E-16 1.7E-20 127.9 12.1 85 298-382 11-97 (103)
23 2cpz_A CUG triplet repeat RNA- 99.7 7.4E-16 2.5E-20 129.6 13.3 84 299-382 22-107 (115)
24 2lxi_A RNA-binding protein 10; 99.7 6.3E-17 2.1E-21 130.6 6.1 80 303-382 2-85 (91)
25 3s8s_A Histone-lysine N-methyl 99.7 3.1E-16 1E-20 131.2 10.4 80 301-380 5-86 (110)
26 2do4_A Squamous cell carcinoma 99.7 6.7E-16 2.3E-20 126.4 12.2 84 299-382 14-98 (100)
27 1whw_A Hypothetical protein ri 99.7 5.2E-16 1.8E-20 126.8 11.5 83 300-382 6-90 (99)
28 2dgo_A Cytotoxic granule-assoc 99.7 2.1E-15 7.3E-20 126.7 15.4 85 298-382 11-97 (115)
29 1x4a_A Splicing factor, argini 99.7 1.3E-15 4.4E-20 126.9 13.7 82 299-382 19-101 (109)
30 2d9p_A Polyadenylate-binding p 99.7 8.2E-16 2.8E-20 126.6 12.3 84 298-382 11-95 (103)
31 1x5s_A Cold-inducible RNA-bind 99.7 5.7E-16 1.9E-20 127.3 11.0 83 300-382 10-94 (102)
32 1x5t_A Splicing factor 3B subu 99.7 4.3E-16 1.5E-20 126.5 10.2 82 301-382 4-88 (96)
33 2dgs_A DAZ-associated protein 99.7 7.9E-16 2.7E-20 125.8 11.7 83 300-382 8-91 (99)
34 2cq3_A RNA-binding protein 9; 99.6 1.6E-15 5.4E-20 124.9 13.1 84 298-382 11-95 (103)
35 3pgw_S U1-70K; protein-RNA com 99.6 9.6E-16 3.3E-20 158.3 14.5 83 300-382 100-184 (437)
36 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.5E-15 5.1E-20 125.1 12.8 84 298-382 11-95 (103)
37 2dnh_A Bruno-like 5, RNA bindi 99.6 1.7E-15 6E-20 125.0 13.2 84 299-382 12-99 (105)
38 2khc_A Testis-specific RNP-typ 99.6 1.4E-15 4.8E-20 128.4 12.8 80 299-378 37-118 (118)
39 2dnm_A SRP46 splicing factor; 99.6 7.7E-16 2.6E-20 126.8 10.9 84 299-382 10-95 (103)
40 2dng_A Eukaryotic translation 99.6 1.4E-15 4.8E-20 125.3 12.4 82 299-382 12-95 (103)
41 2cpf_A RNA binding motif prote 99.6 1.1E-15 3.7E-20 124.6 11.5 82 301-382 4-90 (98)
42 4f25_A Polyadenylate-binding p 99.6 5.6E-16 1.9E-20 130.6 10.0 79 302-381 5-84 (115)
43 1x4b_A Heterogeneous nuclear r 99.6 7.7E-16 2.6E-20 129.7 10.7 84 299-382 24-108 (116)
44 2dgp_A Bruno-like 4, RNA bindi 99.6 9.8E-16 3.4E-20 126.8 11.0 84 299-382 10-98 (106)
45 2cpe_A RNA-binding protein EWS 99.6 8.9E-16 3E-20 128.6 10.7 84 299-382 12-105 (113)
46 3s7r_A Heterogeneous nuclear r 99.6 1E-15 3.5E-20 122.0 10.5 79 299-377 8-87 (87)
47 2cph_A RNA binding motif prote 99.6 1.7E-15 5.7E-20 125.5 12.1 84 299-382 12-99 (107)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.6 6.3E-16 2.2E-20 127.0 9.2 84 299-382 9-94 (102)
49 3bs9_A Nucleolysin TIA-1 isofo 99.6 8.3E-16 2.9E-20 122.3 9.6 80 301-380 5-86 (87)
50 2cqc_A Arginine/serine-rich sp 99.6 1.3E-15 4.5E-20 123.3 10.8 81 299-379 12-94 (95)
51 2dh8_A DAZ-associated protein 99.6 1.5E-15 5.2E-20 125.5 11.4 84 299-382 13-97 (105)
52 3md1_A Nuclear and cytoplasmic 99.6 1.1E-15 3.8E-20 120.5 10.1 80 302-381 1-82 (83)
53 1wez_A HnRNP H', FTP-3, hetero 99.6 1.3E-15 4.5E-20 125.5 10.9 81 300-381 13-93 (102)
54 2cqg_A TDP-43, TAR DNA-binding 99.6 3.8E-15 1.3E-19 122.6 13.4 83 299-382 12-95 (103)
55 2dhg_A TRNA selenocysteine ass 99.6 2.4E-15 8.3E-20 123.9 12.2 83 300-382 7-92 (104)
56 2lkz_A RNA-binding protein 5; 99.6 4.1E-16 1.4E-20 126.8 7.3 81 299-379 6-94 (95)
57 2div_A TRNA selenocysteine ass 99.6 2.2E-15 7.6E-20 123.0 11.8 82 300-381 7-95 (99)
58 1wi8_A EIF-4B, eukaryotic tran 99.6 1.8E-15 6E-20 124.9 11.0 81 300-382 13-96 (104)
59 2dgx_A KIAA0430 protein; RRM d 99.6 1.1E-15 3.9E-20 124.3 9.6 82 299-382 6-92 (96)
60 1p27_B RNA-binding protein 8A; 99.6 1.9E-15 6.6E-20 125.0 11.2 83 299-381 20-104 (106)
61 3p5t_L Cleavage and polyadenyl 99.6 5E-16 1.7E-20 124.8 7.1 79 303-381 2-84 (90)
62 1x4c_A Splicing factor, argini 99.6 4.9E-15 1.7E-19 123.2 13.3 76 301-382 14-95 (108)
63 2do0_A HnRNP M, heterogeneous 99.6 7.8E-15 2.7E-19 123.0 14.5 83 299-381 12-95 (114)
64 2la6_A RNA-binding protein FUS 99.6 2.8E-15 9.5E-20 122.6 11.3 78 301-378 12-99 (99)
65 2e5h_A Zinc finger CCHC-type a 99.6 1.9E-15 6.5E-20 122.2 10.2 80 299-378 13-94 (94)
66 2jrs_A RNA-binding protein 39; 99.6 2.6E-15 9E-20 125.0 11.2 82 300-381 24-107 (108)
67 3n9u_C Cleavage and polyadenyl 99.6 1.4E-15 4.7E-20 135.3 10.1 81 300-380 53-137 (156)
68 2dgu_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 122.6 12.1 76 300-382 9-85 (103)
69 2cqp_A RNA-binding protein 12; 99.6 2E-15 6.8E-20 123.1 10.1 82 300-381 13-96 (98)
70 1x4h_A RNA-binding protein 28; 99.6 3.5E-15 1.2E-19 124.4 11.8 84 299-382 12-103 (111)
71 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.5E-15 5E-20 120.3 9.0 79 300-378 5-85 (85)
72 2dgv_A HnRNP M, heterogeneous 99.6 3.2E-15 1.1E-19 120.3 11.1 82 300-382 6-88 (92)
73 2ywk_A Putative RNA-binding pr 99.6 2.2E-15 7.6E-20 122.0 9.9 81 299-379 13-94 (95)
74 2dnq_A RNA-binding protein 4B; 99.6 4.4E-15 1.5E-19 119.2 11.4 76 300-382 6-82 (90)
75 2cq4_A RNA binding motif prote 99.6 5.9E-16 2E-20 130.0 6.4 82 299-381 22-105 (114)
76 2err_A Ataxin-2-binding protei 99.6 1.6E-15 5.4E-20 126.5 8.8 81 299-380 26-107 (109)
77 2fc8_A NCL protein; structure 99.6 4E-15 1.4E-19 122.2 11.1 81 299-382 12-94 (102)
78 3ucg_A Polyadenylate-binding p 99.6 3.8E-15 1.3E-19 119.0 10.6 80 301-381 5-86 (89)
79 1s79_A Lupus LA protein; RRM, 99.6 1.9E-15 6.5E-20 124.8 8.9 81 299-379 8-88 (103)
80 2fc9_A NCL protein; structure 99.6 3.5E-15 1.2E-19 122.4 10.4 81 299-382 12-93 (101)
81 1sjq_A Polypyrimidine tract-bi 99.6 1.5E-15 5.1E-20 125.3 8.1 78 300-382 14-94 (105)
82 2x1f_A MRNA 3'-END-processing 99.6 2.5E-15 8.5E-20 122.1 9.2 80 302-381 2-83 (96)
83 2rs2_A Musashi-1, RNA-binding 99.6 2.2E-15 7.4E-20 125.7 9.0 83 299-381 22-105 (109)
84 2dgw_A Probable RNA-binding pr 99.6 6E-15 2E-19 118.6 11.1 80 300-381 8-88 (91)
85 1oo0_B CG8781-PA, drosophila Y 99.6 2.8E-15 9.5E-20 124.9 9.5 84 299-382 23-108 (110)
86 2kxn_B Transformer-2 protein h 99.6 3.4E-15 1.2E-19 128.4 10.1 83 299-381 43-127 (129)
87 4a8x_A RNA-binding protein wit 99.6 2.6E-15 9E-20 119.6 8.6 81 301-381 3-86 (88)
88 3ns6_A Eukaryotic translation 99.6 6.7E-16 2.3E-20 126.7 4.9 81 301-381 5-94 (100)
89 2dgt_A RNA-binding protein 30; 99.6 7.8E-15 2.7E-19 118.2 11.1 77 299-382 7-84 (92)
90 2hgn_A Heterogeneous nuclear r 99.6 6.1E-16 2.1E-20 134.6 4.8 81 299-381 43-124 (139)
91 2m2b_A RNA-binding protein 10; 99.6 2.5E-15 8.6E-20 129.5 8.6 83 299-382 20-110 (131)
92 3r27_A HnRNP L, heterogeneous 99.6 5.4E-15 1.8E-19 120.7 9.9 76 300-380 19-97 (100)
93 2cpi_A CCR4-NOT transcription 99.6 4.1E-15 1.4E-19 124.3 9.4 84 299-382 12-103 (111)
94 2cq1_A PTB-like protein L; RRM 99.6 6E-15 2.1E-19 121.2 10.1 79 299-382 12-93 (101)
95 1x4d_A Matrin 3; structural ge 99.6 4.1E-15 1.4E-19 122.3 9.0 79 299-382 12-94 (102)
96 2cpj_A Non-POU domain-containi 99.6 1.2E-14 4.2E-19 118.7 11.8 79 299-382 12-91 (99)
97 1wex_A Hypothetical protein (r 99.6 1.5E-14 5.2E-19 119.5 12.4 79 299-382 12-93 (104)
98 2hvz_A Splicing factor, argini 99.6 9.1E-15 3.1E-19 119.9 10.9 76 303-382 1-77 (101)
99 1p1t_A Cleavage stimulation fa 99.6 3E-15 1E-19 123.3 8.1 82 300-381 6-89 (104)
100 2cpd_A Apobec-1 stimulating pr 99.6 1.7E-14 5.7E-19 117.9 12.4 77 299-382 12-91 (99)
101 2lcw_A RNA-binding protein FUS 99.4 1.5E-16 5E-21 134.2 0.0 84 299-382 4-97 (116)
102 1wg5_A Heterogeneous nuclear r 99.6 1.1E-14 3.7E-19 120.3 11.2 82 300-381 13-95 (104)
103 2kvi_A Nuclear polyadenylated 99.6 4.1E-15 1.4E-19 120.9 8.4 77 299-382 7-85 (96)
104 2jwn_A Embryonic polyadenylate 99.6 9.6E-15 3.3E-19 124.3 11.1 82 300-382 34-117 (124)
105 3ulh_A THO complex subunit 4; 99.6 9.1E-15 3.1E-19 121.1 10.3 79 300-378 27-106 (107)
106 2ek1_A RNA-binding protein 12; 99.6 2.7E-15 9.1E-20 121.5 6.7 80 300-379 13-94 (95)
107 2ad9_A Polypyrimidine tract-bi 99.6 9.8E-15 3.3E-19 123.3 10.3 79 299-382 28-109 (119)
108 2cpx_A Hypothetical protein FL 99.6 6.1E-15 2.1E-19 123.8 8.8 83 300-382 23-107 (115)
109 1why_A Hypothetical protein ri 99.6 1.5E-14 5.2E-19 117.7 10.7 78 300-382 15-95 (97)
110 1x4f_A Matrin 3; structural ge 99.6 1.2E-14 4.1E-19 121.4 10.2 79 299-382 22-104 (112)
111 1wel_A RNA-binding protein 12; 99.6 7.2E-15 2.5E-19 125.3 9.0 80 300-380 23-104 (124)
112 2dnp_A RNA-binding protein 14; 99.6 1.6E-14 5.6E-19 115.8 10.5 77 299-382 6-83 (90)
113 2wbr_A GW182, gawky, LD47780P; 99.6 5.7E-15 2E-19 116.7 7.5 72 302-378 7-79 (89)
114 2cpy_A RNA-binding protein 12; 99.6 8E-15 2.7E-19 123.2 8.9 82 300-381 13-95 (114)
115 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.4E-15 1.9E-19 114.7 7.1 75 303-377 1-76 (77)
116 1x4e_A RNA binding motif, sing 99.6 3.2E-15 1.1E-19 118.5 5.9 78 301-378 4-83 (85)
117 2db1_A Heterogeneous nuclear r 99.6 6.9E-15 2.3E-19 124.5 8.3 82 299-380 14-98 (118)
118 1wf1_A RNA-binding protein RAL 99.6 2.3E-14 7.8E-19 119.5 11.3 74 301-381 26-101 (110)
119 2e5j_A Methenyltetrahydrofolat 99.6 3.2E-14 1.1E-18 115.8 11.8 78 300-381 17-95 (97)
120 2mss_A Protein (musashi1); RNA 99.5 5.9E-15 2E-19 114.1 6.9 74 304-377 1-75 (75)
121 1x5o_A RNA binding motif, sing 99.5 4.5E-14 1.5E-18 118.3 12.9 82 299-380 22-112 (114)
122 2j76_E EIF-4B, EIF4B, eukaryot 99.5 3.4E-15 1.2E-19 122.4 5.7 80 300-381 17-99 (100)
123 2xnq_A Nuclear polyadenylated 99.5 1.8E-14 6.3E-19 117.4 10.0 75 300-381 20-96 (97)
124 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.6E-14 5.6E-19 129.4 10.4 83 300-382 70-154 (165)
125 1fjc_A Nucleolin RBD2, protein 99.5 9E-15 3.1E-19 118.7 7.9 80 299-382 13-93 (96)
126 2nlw_A Eukaryotic translation 99.5 1.8E-14 6E-19 119.2 9.8 80 301-381 14-101 (105)
127 2jvo_A Nucleolar protein 3; nu 99.5 1.4E-14 4.9E-19 120.5 9.2 77 299-382 28-105 (108)
128 2dnn_A RNA-binding protein 12; 99.5 7.5E-15 2.6E-19 122.4 7.4 79 301-380 15-93 (109)
129 2hgl_A HNRPF protein, heteroge 99.5 7.5E-15 2.6E-19 127.3 7.7 81 299-380 41-125 (136)
130 1x4g_A Nucleolysin TIAR; struc 99.5 2.4E-14 8.3E-19 119.1 10.4 79 299-382 22-101 (109)
131 2a3j_A U1 small nuclear ribonu 99.5 2.9E-14 1E-18 122.1 11.0 79 301-381 28-111 (127)
132 3beg_B Splicing factor, argini 99.5 1E-14 3.5E-19 122.8 8.0 75 301-381 15-95 (115)
133 2cqh_A IGF-II mRNA-binding pro 99.5 1.2E-14 4.3E-19 117.2 8.2 76 301-382 7-85 (93)
134 2la4_A Nuclear and cytoplasmic 99.5 1.3E-14 4.3E-19 119.0 8.3 75 301-380 26-101 (101)
135 1fj7_A Nucleolin RBD1, protein 99.5 5.2E-15 1.8E-19 121.3 5.8 80 301-382 16-97 (101)
136 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3.2E-14 1.1E-18 123.5 11.0 79 299-377 60-140 (140)
137 1iqt_A AUF1, heterogeneous nuc 99.5 6.7E-15 2.3E-19 113.7 5.7 74 304-377 1-75 (75)
138 2lea_A Serine/arginine-rich sp 99.5 1.2E-14 4.1E-19 126.0 7.9 83 300-382 45-129 (135)
139 2kt5_A RNA and export factor-b 99.5 2.9E-14 9.9E-19 121.5 10.2 82 300-381 33-115 (124)
140 2ki2_A SS-DNA binding protein 99.5 5.9E-15 2E-19 118.3 5.4 79 303-382 2-82 (90)
141 2jvr_A Nucleolar protein 3; RN 99.5 1.3E-14 4.5E-19 121.2 7.6 77 301-380 27-105 (111)
142 2ytc_A PRE-mRNA-splicing facto 99.5 3.9E-14 1.3E-18 112.1 10.0 75 299-378 9-85 (85)
143 2dis_A Unnamed protein product 99.5 2.6E-14 8.9E-19 118.7 9.2 82 301-382 7-94 (109)
144 2lmi_A GRSF-1, G-rich sequence 99.5 6E-15 2.1E-19 122.5 5.2 81 300-380 9-92 (107)
145 2kn4_A Immunoglobulin G-bindin 99.5 3.7E-14 1.3E-18 125.9 10.4 82 300-381 68-151 (158)
146 1x5p_A Negative elongation fac 99.5 1.3E-13 4.3E-18 112.2 12.5 76 300-382 13-89 (97)
147 2hgm_A HNRPF protein, heteroge 99.5 1.4E-14 4.7E-19 123.8 7.0 80 300-380 40-121 (126)
148 2dha_A FLJ20171 protein; RRM d 99.5 1.3E-14 4.5E-19 123.6 6.7 82 299-380 20-105 (123)
149 2krb_A Eukaryotic translation 99.5 1.6E-14 5.5E-19 113.5 6.6 72 302-374 1-80 (81)
150 1whx_A Hypothetical protein ri 99.5 2.7E-14 9.1E-19 119.5 7.0 76 300-380 8-84 (111)
151 2xs2_A Deleted in azoospermia- 99.5 2.9E-14 1E-18 117.0 7.0 81 300-381 7-87 (102)
152 2i2y_A Fusion protein consists 99.5 7E-14 2.4E-18 123.1 10.0 79 299-381 70-149 (150)
153 3lqv_A PRE-mRNA branch site pr 99.5 1E-13 3.4E-18 116.4 9.7 79 301-381 7-86 (115)
154 2e44_A Insulin-like growth fac 99.5 1.4E-13 4.9E-18 111.5 9.7 77 301-380 14-92 (96)
155 1q42_A MTR2, mRNA transport re 99.5 3.9E-14 1.3E-18 124.9 6.7 102 10-118 23-146 (201)
156 2e5g_A U6 snRNA-specific termi 99.5 2.4E-13 8.1E-18 109.9 10.9 76 301-381 7-83 (94)
157 1nu4_A U1A RNA binding domain; 99.5 5E-14 1.7E-18 114.4 6.9 80 300-381 6-90 (97)
158 3d2w_A TAR DNA-binding protein 99.5 7.3E-14 2.5E-18 112.0 7.3 78 299-381 8-85 (89)
159 1l3k_A Heterogeneous nuclear r 99.5 1.8E-13 6.3E-18 125.0 10.4 81 302-382 104-185 (196)
160 1wf0_A TDP-43, TAR DNA-binding 99.5 4.5E-14 1.5E-18 112.7 5.6 77 301-382 4-80 (88)
161 3egn_A RNA-binding protein 40; 99.5 1.1E-13 3.8E-18 120.8 8.2 81 301-381 44-131 (143)
162 1sjr_A Polypyrimidine tract-bi 99.5 3.7E-13 1.3E-17 119.5 11.5 77 302-381 46-125 (164)
163 2f3j_A RNA and export factor b 99.4 2E-13 6.9E-18 123.8 9.6 81 300-380 86-167 (177)
164 1wg1_A KIAA1579 protein, homol 99.4 1.5E-13 5.1E-18 109.7 6.9 75 301-381 4-79 (88)
165 4f02_A Polyadenylate-binding p 99.4 3.5E-13 1.2E-17 125.7 10.4 79 302-380 15-95 (213)
166 1l3k_A Heterogeneous nuclear r 99.4 4.2E-13 1.4E-17 122.6 10.5 83 299-381 10-93 (196)
167 3zzy_A Polypyrimidine tract-bi 99.4 4.5E-13 1.6E-17 114.5 9.9 76 302-381 28-107 (130)
168 2j8a_A Histone-lysine N-methyl 99.4 2.8E-13 9.6E-18 114.3 8.3 77 303-379 3-95 (136)
169 3md3_A Nuclear and cytoplasmic 99.4 9.5E-13 3.2E-17 116.6 11.2 78 301-378 86-165 (166)
170 2yh0_A Splicing factor U2AF 65 99.4 2.2E-12 7.7E-17 117.9 14.0 83 300-382 112-196 (198)
171 2e5i_A Heterogeneous nuclear r 99.4 1.3E-12 4.4E-17 111.1 11.2 75 302-381 25-103 (124)
172 4f02_A Polyadenylate-binding p 99.4 5.7E-13 1.9E-17 124.3 9.6 79 302-381 103-182 (213)
173 2voo_A Lupus LA protein; RNA-b 99.4 8E-13 2.7E-17 121.5 10.3 79 301-379 108-186 (193)
174 1fxl_A Paraneoplastic encephal 99.4 1.1E-12 3.7E-17 116.3 10.5 80 302-381 2-83 (167)
175 2cq2_A Hypothetical protein LO 99.4 5.5E-13 1.9E-17 111.5 8.0 76 301-381 24-107 (114)
176 2diu_A KIAA0430 protein; struc 99.4 1.2E-12 4.1E-17 104.5 9.1 71 303-382 10-86 (96)
177 2dnl_A Cytoplasmic polyadenyla 99.4 4.3E-13 1.5E-17 112.6 6.9 76 301-378 7-86 (114)
178 2hzc_A Splicing factor U2AF 65 99.4 6.8E-13 2.3E-17 105.3 7.7 70 301-376 5-86 (87)
179 2qfj_A FBP-interacting repress 99.4 1.4E-12 4.8E-17 121.0 11.1 82 301-382 124-207 (216)
180 1b7f_A Protein (SXL-lethal pro 99.4 8.4E-13 2.9E-17 117.4 8.9 80 302-381 3-84 (168)
181 3md3_A Nuclear and cytoplasmic 99.4 1E-12 3.4E-17 116.5 8.7 79 303-381 1-80 (166)
182 2cjk_A Nuclear polyadenylated 99.4 7.5E-13 2.6E-17 117.7 7.8 79 302-380 87-166 (167)
183 2g4b_A Splicing factor U2AF 65 99.4 1.9E-12 6.5E-17 115.7 10.4 76 302-377 94-171 (172)
184 2bz2_A Negative elongation fac 99.4 1.5E-12 5.1E-17 110.5 8.9 76 300-382 37-113 (121)
185 3tyt_A Heterogeneous nuclear r 99.3 1.3E-12 4.6E-17 121.2 8.4 77 301-381 3-81 (205)
186 2qfj_A FBP-interacting repress 99.3 3E-12 1E-16 118.7 9.3 81 300-380 26-108 (216)
187 1b7f_A Protein (SXL-lethal pro 99.3 8.3E-12 2.9E-16 110.9 11.1 77 301-377 88-168 (168)
188 3nmr_A Cugbp ELAV-like family 99.3 6.3E-12 2.2E-16 112.4 10.1 81 301-381 2-89 (175)
189 3nmr_A Cugbp ELAV-like family 99.3 6.8E-12 2.3E-16 112.2 10.2 77 301-377 94-174 (175)
190 2cjk_A Nuclear polyadenylated 99.3 2.5E-12 8.5E-17 114.3 7.1 79 301-380 2-81 (167)
191 3pgw_A U1-A; protein-RNA compl 99.3 2.5E-11 8.7E-16 117.6 14.6 77 298-378 203-281 (282)
192 1fje_B Nucleolin RBD12, protei 99.3 3.6E-12 1.2E-16 114.4 7.9 77 301-381 98-175 (175)
193 1fxl_A Paraneoplastic encephal 99.3 1.3E-11 4.3E-16 109.4 10.7 77 301-377 87-167 (167)
194 2pe8_A Splicing factor 45; RRM 99.3 1.3E-11 4.3E-16 102.1 9.8 79 301-379 7-93 (105)
195 3pgw_A U1-A; protein-RNA compl 99.3 1.3E-11 4.6E-16 119.6 10.8 80 300-381 7-91 (282)
196 2adc_A Polypyrimidine tract-bi 99.3 1.1E-11 3.7E-16 116.8 9.1 77 300-380 32-110 (229)
197 3u1l_A PRE-mRNA-splicing facto 99.2 9.4E-12 3.2E-16 117.5 8.1 79 299-382 131-231 (240)
198 2dit_A HIV TAT specific factor 99.2 6.6E-11 2.3E-15 98.8 12.0 80 300-382 13-104 (112)
199 2ghp_A U4/U6 snRNA-associated 99.2 1.8E-11 6.3E-16 119.2 8.2 80 300-380 208-291 (292)
200 3smz_A Protein raver-1, ribonu 99.2 3.3E-11 1.1E-15 116.9 9.9 81 301-381 183-265 (284)
201 1qm9_A Polypyrimidine tract-bi 99.2 1.3E-11 4.4E-16 113.2 6.6 77 301-381 2-80 (198)
202 3smz_A Protein raver-1, ribonu 99.2 7.6E-11 2.6E-15 114.3 10.7 80 302-381 95-176 (284)
203 3sde_A Paraspeckle component 1 99.2 6.7E-11 2.3E-15 113.7 9.9 76 300-380 20-96 (261)
204 1fje_B Nucleolin RBD12, protei 99.2 9.9E-12 3.4E-16 111.5 3.8 82 299-381 10-92 (175)
205 2d9o_A DNAJ (HSP40) homolog, s 99.2 4.5E-10 1.5E-14 91.7 13.0 76 302-382 10-92 (100)
206 2adc_A Polypyrimidine tract-bi 99.1 1.1E-10 3.9E-15 109.8 9.9 76 301-380 150-228 (229)
207 2g4b_A Splicing factor U2AF 65 99.1 1E-10 3.5E-15 104.3 8.9 74 301-380 3-88 (172)
208 1qm9_A Polypyrimidine tract-bi 99.1 6E-11 2.1E-15 108.7 7.4 76 301-380 119-197 (198)
209 3sde_A Paraspeckle component 1 99.1 1.9E-10 6.5E-15 110.5 10.6 80 302-381 96-180 (261)
210 2yh0_A Splicing factor U2AF 65 99.1 1.3E-10 4.3E-15 106.2 8.7 74 302-381 4-89 (198)
211 2ghp_A U4/U6 snRNA-associated 99.1 9.6E-11 3.3E-15 114.1 8.0 82 301-382 116-199 (292)
212 3tyt_A Heterogeneous nuclear r 99.1 9E-11 3.1E-15 108.8 7.2 68 302-370 123-193 (205)
213 1jmt_A Splicing factor U2AF 35 99.1 3.3E-11 1.1E-15 99.4 3.2 71 307-377 20-103 (104)
214 3v4m_A Splicing factor U2AF 65 99.0 2.4E-10 8.1E-15 94.3 6.7 79 301-379 4-96 (105)
215 1of5_B MTR2, YKL186C, mRNA tra 99.0 1.5E-09 5.2E-14 94.7 10.1 101 11-118 14-121 (184)
216 3ue2_A Poly(U)-binding-splicin 99.0 8.3E-10 2.9E-14 93.0 7.9 79 301-379 19-108 (118)
217 3tht_A Alkylated DNA repair pr 98.9 2.3E-09 8E-14 106.4 9.2 74 300-378 16-97 (345)
218 1owx_A Lupus LA protein, SS-B, 98.8 6.9E-09 2.4E-13 87.2 8.0 76 298-378 14-94 (121)
219 3s6e_A RNA-binding protein 39; 98.7 1.4E-08 4.8E-13 84.9 6.2 75 302-379 7-92 (114)
220 2dnr_A Synaptojanin-1; RRM dom 98.7 3.3E-08 1.1E-12 78.1 6.4 73 301-380 6-86 (91)
221 1ufw_A Synaptojanin 2; RNP dom 98.5 2.6E-07 8.8E-12 73.4 6.7 71 301-379 14-94 (95)
222 3dxb_A Thioredoxin N-terminall 98.3 1.7E-06 5.8E-11 80.6 7.8 65 315-379 142-212 (222)
223 2l9w_A U4/U6 snRNA-associated- 97.7 0.0001 3.5E-09 59.7 7.5 70 301-375 20-95 (117)
224 2dhx_A Poly (ADP-ribose) polym 97.3 0.0015 5E-08 52.5 9.3 72 302-380 8-84 (104)
225 4i4k_A Uncharacterized protein 97.1 0.004 1.4E-07 53.4 10.9 106 16-127 21-134 (143)
226 3gzr_A Uncharacterized protein 96.6 0.028 9.4E-07 48.3 12.4 114 17-136 9-133 (146)
227 3cu3_A Domain of unknown funct 96.4 0.016 5.3E-07 51.0 9.9 113 15-133 17-138 (172)
228 1whv_A Poly(A)-specific ribonu 96.4 0.012 4E-07 46.7 7.8 54 302-363 16-69 (100)
229 3hx8_A MLR2180 protein, putati 96.3 0.038 1.3E-06 45.3 11.3 115 12-131 4-124 (129)
230 1wey_A Calcipressin 1; structu 96.1 0.012 4.1E-07 47.3 6.4 74 302-380 5-84 (104)
231 3d9r_A Ketosteroid isomerase-l 95.9 0.046 1.6E-06 45.2 9.7 115 13-133 10-133 (135)
232 1uw4_A UPF3X; nonsense mediate 95.6 0.045 1.5E-06 43.1 7.8 65 303-367 2-70 (91)
233 3ctr_A Poly(A)-specific ribonu 95.6 0.016 5.5E-07 46.0 5.1 53 303-363 7-59 (101)
234 2gxf_A Hypothetical protein YY 95.3 0.12 4E-06 43.6 10.2 107 17-129 6-120 (142)
235 3rob_A Uncharacterized conserv 95.3 0.05 1.7E-06 46.3 7.7 110 11-130 14-134 (139)
236 3h51_A Putative calcium/calmod 95.0 0.5 1.7E-05 40.4 13.6 116 11-134 17-141 (156)
237 3b7c_A Uncharacterized protein 95.0 0.37 1.3E-05 39.4 12.0 104 18-128 9-118 (122)
238 1wwh_A Nucleoporin 35, nucleop 94.9 0.065 2.2E-06 44.2 7.1 72 300-377 22-94 (119)
239 3gwr_A Putative calcium/calmod 94.6 0.34 1.2E-05 41.3 11.3 110 11-130 9-125 (144)
240 3pq1_A Poly(A) RNA polymerase; 94.2 0.028 9.5E-07 57.6 4.0 58 302-364 53-110 (464)
241 3duk_A NTF2-like protein of un 93.1 1.2 4.1E-05 36.7 11.6 107 17-132 15-123 (125)
242 2ux0_A Calcium-calmodulin depe 92.7 1.4 4.9E-05 36.6 11.8 112 16-131 15-135 (143)
243 3jum_A Phenazine biosynthesis 92.7 0.25 8.7E-06 44.1 7.1 99 16-116 43-151 (185)
244 3dm8_A Uncharacterized protein 92.5 0.37 1.3E-05 40.6 7.8 97 17-116 7-112 (143)
245 3f7s_A Uncharacterized NTF2-li 92.4 1.1 3.9E-05 37.2 10.8 112 14-131 8-126 (142)
246 3mg1_A OCP, orange carotenoid 92.4 0.52 1.8E-05 44.8 9.1 109 15-130 193-306 (323)
247 3ff0_A Phenazine biosynthesis 92.4 0.25 8.5E-06 43.2 6.5 98 14-115 19-128 (163)
248 3p3d_A Nucleoporin 53; structu 92.2 0.23 7.7E-06 41.6 5.7 76 303-379 8-98 (132)
249 1tp6_A Hypothetical protein PA 92.2 0.92 3.2E-05 37.6 9.7 107 17-129 13-125 (128)
250 3soy_A NTF2-like superfamily p 91.9 1.1 3.9E-05 37.9 10.2 114 12-129 9-132 (145)
251 3er7_A Uncharacterized NTF2-li 91.3 0.15 5.1E-06 42.9 3.8 59 18-81 6-72 (131)
252 2owp_A Hypothetical protein BX 91.2 1.9 6.6E-05 35.7 10.6 110 13-129 11-122 (129)
253 3fka_A Uncharacterized NTF-2 l 91.1 1.7 5.8E-05 35.6 10.1 103 18-132 13-119 (120)
254 2rcd_A Uncharacterized protein 91.1 2.6 9E-05 34.4 11.4 110 12-128 13-122 (129)
255 3bb9_A Putative orphan protein 90.9 1.1 3.6E-05 37.9 8.9 107 15-128 31-145 (148)
256 2l08_A Regulator of nonsense t 89.7 0.24 8.1E-06 39.3 3.4 66 302-367 9-78 (97)
257 2rfr_A Uncharacterized protein 89.3 1.7 5.9E-05 36.6 9.0 113 15-135 20-144 (155)
258 3b8l_A Uncharacterized protein 89.1 2.6 9E-05 35.9 10.1 120 12-134 26-153 (163)
259 3en8_A Uncharacterized NTF-2 l 88.7 2.5 8.7E-05 34.7 9.4 63 16-81 7-70 (128)
260 3ff2_A Uncharacterized cystati 88.6 2.3 7.8E-05 34.0 8.9 63 17-82 5-70 (117)
261 2kn4_A Immunoglobulin G-bindin 88.5 0.3 1E-05 41.9 3.5 31 332-363 3-33 (158)
262 3h3h_A Uncharacterized snoal-l 88.0 0.61 2.1E-05 37.9 5.0 67 15-81 9-82 (122)
263 2r4i_A Uncharacterized protein 87.8 3.4 0.00012 32.9 9.5 104 18-128 10-117 (123)
264 3f14_A Uncharacterized NTF2-li 87.5 2 6.8E-05 34.3 7.7 90 18-116 4-100 (112)
265 3blz_A NTF2-like protein of un 86.9 6.7 0.00023 32.0 10.9 110 16-134 14-126 (128)
266 3dmc_A NTF2-like protein; stru 86.9 3.2 0.00011 34.4 9.0 60 9-69 7-67 (134)
267 3fh1_A Uncharacterized NTF2-li 86.0 3 0.0001 34.0 8.2 99 13-116 16-116 (129)
268 2chc_A Protein RV3472; hypothe 85.8 3.9 0.00013 35.0 9.3 112 15-133 15-132 (170)
269 1ohp_A Steroid delta-isomerase 85.7 2.3 8E-05 33.6 7.4 51 16-69 7-58 (125)
270 1nww_A Limonene-1,2-epoxide hy 85.4 6.2 0.00021 32.7 10.2 50 16-69 24-74 (149)
271 3dxo_A Uncharacterized snoal-l 85.3 4.4 0.00015 32.8 8.9 64 17-85 6-77 (121)
272 3ec9_A Uncharacterized NTF2-li 85.1 2.3 7.7E-05 35.1 7.1 96 17-115 15-117 (140)
273 3gzb_A Putative snoal-like pol 84.9 2.1 7.3E-05 35.4 6.4 76 18-101 24-102 (154)
274 3cnx_A Uncharacterized protein 84.7 7.8 0.00027 33.8 10.6 111 17-133 15-156 (170)
275 3a76_A Gamma-hexachlorocyclohe 84.6 5.1 0.00017 34.8 9.5 114 15-133 32-154 (176)
276 3i0y_A Putative polyketide cyc 84.0 6.5 0.00022 32.0 9.6 51 16-70 10-61 (140)
277 3fsd_A NTF2-like protein of un 83.7 5.1 0.00017 32.9 8.7 106 13-127 14-127 (134)
278 4h3u_A Hypothetical protein; s 83.1 5.7 0.00019 33.6 9.0 93 18-116 29-127 (158)
279 3f7x_A Putative polyketide cyc 82.7 3 0.0001 35.2 7.0 50 16-69 22-72 (151)
280 3k0z_A Putative polyketide cyc 82.4 5.6 0.00019 33.8 8.7 63 16-82 36-101 (159)
281 2bng_A MB2760; epoxide hydrola 81.2 6.3 0.00022 32.8 8.5 94 15-115 16-112 (149)
282 1s5a_A Hypothetical protein YE 80.3 5.7 0.00019 32.8 7.9 54 16-69 12-67 (150)
283 3ehc_A Snoal-like polyketide c 80.2 4.9 0.00017 32.5 7.2 59 17-83 6-67 (128)
284 3g0k_A Putative membrane prote 80.1 9.4 0.00032 32.1 9.2 66 11-82 24-93 (148)
285 1sjw_A Nogalonic acid methyl e 79.9 11 0.00039 30.7 9.6 64 17-83 5-72 (144)
286 2i2y_A Fusion protein consists 79.5 0.93 3.2E-05 38.4 2.6 39 341-380 11-51 (150)
287 3g8z_A Protein of unknown func 79.2 3.6 0.00012 34.6 6.2 54 15-68 21-75 (148)
288 3ebt_A Uncharacterized NTF2-li 78.1 6.4 0.00022 31.7 7.4 65 17-81 6-76 (132)
289 2gey_A ACLR protein; alpha+bet 77.7 6.7 0.00023 33.1 7.6 62 16-83 6-70 (158)
290 2gex_A SNOL; alpha+beta barrel 77.2 24 0.00083 29.2 11.0 63 16-83 6-71 (152)
291 1oh0_A Steroid delta-isomerase 76.7 8.6 0.0003 30.7 7.7 64 15-81 8-74 (131)
292 1z1s_A Hypothetical protein PA 76.5 17 0.00057 30.8 9.9 54 17-70 26-81 (163)
293 1tuh_A BAL32A, hypothetical pr 76.3 5.8 0.0002 33.3 6.8 68 14-81 29-100 (156)
294 3kkg_A Putative snoal-like pol 75.8 5.2 0.00018 33.2 6.2 64 16-83 11-80 (146)
295 3f9s_A Putative polyketide cyc 74.8 16 0.00055 30.0 9.1 66 17-83 9-79 (146)
296 2f99_A Aklanonic acid methyl e 73.8 22 0.00075 29.6 9.8 65 16-83 13-81 (153)
297 3fgy_A Uncharacterized NTF2-li 73.7 3.8 0.00013 33.4 4.7 54 16-69 7-61 (135)
298 2rgq_A Domain of unknown funct 71.9 40 0.0014 27.6 11.4 66 15-85 11-80 (144)
299 3hk4_A MLR7391 protein; NTF2-l 71.6 31 0.0011 28.5 10.1 94 18-115 24-122 (136)
300 3ef8_A Putative scyalone dehyd 70.8 24 0.00083 29.3 9.4 67 17-87 14-83 (150)
301 2a15_A Hypothetical protein RV 70.7 32 0.0011 27.7 10.0 54 16-69 9-67 (139)
302 3d45_A Poly(A)-specific ribonu 68.0 8.9 0.0003 39.6 7.0 54 302-363 440-493 (507)
303 2k54_A Protein ATU0742; protei 66.1 23 0.0008 27.9 8.0 91 17-115 6-101 (123)
304 3rga_A Epoxide hydrolase; NTF2 65.1 12 0.0004 35.4 6.7 51 16-69 8-59 (283)
305 2f86_B Hypothetical protein K1 64.3 34 0.0012 28.5 8.9 108 17-130 15-130 (143)
306 3grd_A Uncharacterized NTF2-su 60.5 4.1 0.00014 33.2 2.2 96 17-115 7-111 (134)
307 3f40_A Uncharacterized NTF2-li 59.2 17 0.00057 29.0 5.7 49 17-70 9-58 (114)
308 3f8h_A Putative polyketide cyc 54.2 21 0.00072 29.8 5.8 48 18-69 22-70 (150)
309 3mso_A Steroid delta-isomerase 51.5 11 0.00039 31.4 3.6 52 15-69 10-62 (143)
310 2g0c_A ATP-dependent RNA helic 50.8 14 0.00048 27.1 3.6 69 304-378 2-75 (76)
311 3rga_A Epoxide hydrolase; NTF2 50.2 99 0.0034 28.8 10.4 56 12-70 136-192 (283)
312 2pk2_A Cyclin-T1, protein TAT; 45.4 4.4 0.00015 39.9 0.0 14 313-326 228-241 (358)
313 2pk2_A Cyclin-T1, protein TAT; 43.2 5 0.00017 39.5 0.0 10 33-42 65-74 (358)
314 3ke7_A Putative ketosteroid is 42.5 1.4E+02 0.0048 24.4 10.4 114 15-133 15-130 (134)
315 3ejv_A Uncharacterized protein 42.3 64 0.0022 27.8 7.2 73 13-85 25-107 (179)
316 3g16_A Uncharacterized protein 40.3 19 0.00066 30.8 3.3 67 13-81 9-78 (156)
317 3u5c_h Suppressor protein STM1 40.3 5.9 0.0002 37.2 0.0 6 129-134 4-9 (273)
318 4f25_A Polyadenylate-binding p 37.8 6.9 0.00023 31.3 0.0 17 302-318 97-113 (115)
319 3f8x_A Putative delta-5-3-keto 37.2 28 0.00096 29.3 3.8 53 14-69 20-73 (148)
320 3cwz_B RAB6IP1, RAB6-interacti 35.6 48 0.0016 32.7 5.7 33 14-46 176-217 (384)
321 3q2s_C Cleavage and polyadenyl 32.6 10 0.00035 34.5 0.3 12 346-357 142-153 (229)
322 3fry_A Probable copper-exporti 29.7 69 0.0024 22.5 4.5 58 303-366 7-64 (73)
323 4giw_A RUN and SH3 domain-cont 28.6 17 0.00057 32.5 0.9 55 21-79 134-192 (198)
324 3lyg_A NTF2-like protein of un 26.9 50 0.0017 26.6 3.3 49 19-70 7-60 (120)
325 1h2v_Z 20 kDa nuclear CAP bind 25.9 21 0.0007 30.0 1.0 12 352-363 52-63 (156)
326 4e8u_A Putative uncharacterize 25.5 2.1E+02 0.0071 24.7 7.3 57 304-362 14-82 (172)
327 2dwk_A Protein RUFY3; RUN doma 24.6 11 0.00038 33.1 -1.0 54 21-85 120-176 (180)
328 3dxs_X Copper-transporting ATP 21.0 1.7E+02 0.0059 20.0 5.3 59 303-366 4-66 (74)
No 1
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=100.00 E-value=1.1e-38 Score=279.17 Aligned_cols=129 Identities=36% Similarity=0.668 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCC--CCccc-chhhHHHHHHHHhcCCCCcceEEEeeeeeee
Q 012356 9 APSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDS--NGSMT-TVTTMKAINDRILSLNYEDYTAEIKTADAQD 85 (465)
Q Consensus 9 ~~~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~--~~~~~-~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~ 85 (465)
+|++++||++||+|||++|+++|+.||+||+++|+|+|.+. +|++. .++|+++|+++|++|||++|+++|.++|||+
T Consensus 6 ~p~~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~S~l~~~~~~~ng~~~~~~~G~~~I~~~l~~Lp~~~~~~~I~tvD~Qp 85 (140)
T 3q90_A 6 KPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQNFTNCHTKIRHVDAHA 85 (140)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEC----------CCCEEHHHHHHHHHHHTCCCSCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHhhcccCceEEEEccCCCCceeecccCHHHHHHHHHhCCCccceEEEEeEEEEE
Confidence 68999999999999999999999999999999999999754 35443 6899999999999999999999999999999
Q ss_pred eCCCcEEEEEEEEEEcCCCCcccEEEEEEeeecC--CCcEEEEcceEeeecccc
Q 012356 86 SYEKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQD--KGGYFVLNDVFRFVEENE 137 (465)
Q Consensus 86 s~~~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~--~~~y~v~nDifr~~~~~~ 137 (465)
++++||||+|+|+|+.++++.|+|+|+|+|++++ .++|||+||||||+|+++
T Consensus 86 s~~~gilI~V~G~l~~~~~~~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~ 139 (140)
T 3q90_A 86 TLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 139 (140)
T ss_dssp CGGGCEEEEEEEEEECTTCCCEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC-
T ss_pred eCCCCEEEEEEEEEecCCCCccEEEEEEEEeecCCCCCCEEEEEEEeEeehhhc
Confidence 9999999999999999999999999999999996 249999999999999986
No 2
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=100.00 E-value=2.1e-37 Score=263.89 Aligned_cols=118 Identities=41% Similarity=0.679 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHHHHHhhccCcchhcccccCCceeeec-CCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCC
Q 012356 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRP-DSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEK 89 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~-~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~ 89 (465)
|+++||++||+|||++|+++|+.||+||+++|+|+|. +. .+.|+++|.++|++|||.+|+++|.++|||+++++
T Consensus 2 s~~~vg~~Fv~~YY~~ld~~r~~L~~~Y~~~s~~~~~~~~-----~~~G~~~I~~~l~~Lpf~~~~~~I~t~D~Qp~~~~ 76 (120)
T 3ujm_A 2 SHMSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESK-----LVVGQREIHNRIQQLNFNDCHAKISQVDAQATLGN 76 (120)
T ss_dssp --CCHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTCC-----CEESHHHHHHHHHHHCCCSCEEEEEEEEEEEEGGG
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHhhhecccceEEEcCCc-----EecCHHHHHHHHHcCCCcceEEEEecccceEcCCC
Confidence 6789999999999999999999999999999877664 44 68999999999999999999999999999999999
Q ss_pred cEEEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEeee
Q 012356 90 GVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFV 133 (465)
Q Consensus 90 ~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~~ 133 (465)
||||+|+|+|+.++++.|+|+|+|+|++++.++|||+||||||+
T Consensus 77 gili~V~G~l~~~~~~~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 77 GVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp EEEEEEEEEEESTTCCCEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred CEEEEEEEEEEeCCCCCceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 99999999999999889999999999998744999999999995
No 3
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=100.00 E-value=1.2e-36 Score=262.37 Aligned_cols=123 Identities=31% Similarity=0.521 Sum_probs=116.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeC
Q 012356 8 PAPSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSY 87 (465)
Q Consensus 8 ~~~~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~ 87 (465)
.+|++++||++||+|||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+|||++|+|+|.++|||++.
T Consensus 7 ~~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~ 81 (129)
T 1zo2_A 7 LNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDT-----QFQGQANIVNKFNSLNFQRVQFEITRVDCQPSP 81 (129)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHHCCSCEEEEEEEEEEEECT
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----eeccHHHHHHHHHhCCCcceEEEEEEEEEEEeC
Confidence 488999999999999999999999999999999999999986 799999999999999999999999999999999
Q ss_pred CCcEEEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEeeecc
Q 012356 88 EKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVEE 135 (465)
Q Consensus 88 ~~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~~~~ 135 (465)
+++|||+|+|.|+.++++.|+|+|+|+|+++++++|||+||||||+++
T Consensus 82 ~~gilI~V~G~~~~~~~~~~~F~qtF~L~p~~~~~y~I~nD~fR~~~~ 129 (129)
T 1zo2_A 82 NNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRLNLG 129 (129)
T ss_dssp BSSEEEEEEEEEEETTCCCEEEEEEEEEEECSSSCEEEEEEEEEEC--
T ss_pred CCcEEEEEEEEEEECCCCcceEEEEEEEEEcCCCcEEEEeEEEEEecC
Confidence 899999999999999999999999999999984499999999999863
No 4
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=100.00 E-value=1.8e-36 Score=260.74 Aligned_cols=123 Identities=24% Similarity=0.429 Sum_probs=118.2
Q ss_pred CCCHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCC
Q 012356 9 APSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYE 88 (465)
Q Consensus 9 ~~~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~ 88 (465)
+|++++||++||+|||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+|||++|+|+|.++|||++.+
T Consensus 4 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~d~qp~~~ 78 (127)
T 1gy6_A 4 KPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQ-----QFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPD 78 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEECCc-----cccCHHHHHHHHHhCCCcceEEEEEEEEEEEeCC
Confidence 67899999999999999999999999999999999999986 7999999999999999999999999999999998
Q ss_pred CcEEEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEeeecccc
Q 012356 89 KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVEENE 137 (465)
Q Consensus 89 ~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~~~~~~ 137 (465)
++|||+|+|.|+.++++.|+|+|+|+|+++++ +|||+||||||+++++
T Consensus 79 ~~ili~V~G~~~~~~~~~~~F~qtF~L~p~~~-~~~I~nD~fr~~~~~~ 126 (127)
T 1gy6_A 79 SCIISMVVGQLKADEDPIMGFHQMFLLKNIND-AWVCTNDMFRLALHNF 126 (127)
T ss_dssp SCEEEEEEEEEEETTSCCEEEEEEEEEEEETT-EEEEEEEEEEECCCCC
T ss_pred CcEEEEEEEEEEECCCCcceEeEEEEEEEeCC-EEEEEEEEEEEEcccc
Confidence 99999999999999999999999999999986 9999999999999865
No 5
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=100.00 E-value=6.3e-36 Score=256.64 Aligned_cols=119 Identities=27% Similarity=0.499 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeC-CC
Q 012356 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSY-EK 89 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~-~~ 89 (465)
++++||+.||+|||++|+++|+.|++||+++|+|+|++. .+.|+++|.++|.+|||++|+|+|.++|||++. ++
T Consensus 4 ~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~g~-----~~~G~~~I~~~l~~Lp~~~~~h~i~t~D~qp~~~~~ 78 (125)
T 1gy7_A 4 DFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETS-----QLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYG 78 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTS
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCcEEEECCc-----EecCHHHHHHHHHhCCCcceEEEEEEEEEEEecCCC
Confidence 589999999999999999999999999999999999987 799999999999999999999999999999995 58
Q ss_pred cEEEEEEEEEEcCCC-CcccEEEEEEeeecCCCcEEEEcceEeeecc
Q 012356 90 GVIVLVTGCLTGKDN-VKKKFTQTFFLAPQDKGGYFVLNDVFRFVEE 135 (465)
Q Consensus 90 ~i~v~V~G~~~~~~~-~~~~F~q~F~L~~~~~~~y~v~nDifr~~~~ 135 (465)
||||+|+|+|+.+++ +.|+|+|+|+|+|+++ +|||+||||||++.
T Consensus 79 gili~V~G~~~~~~~~~~~~F~qtF~L~p~~~-~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 79 DVLVMITGDLLIDEEQNPQRFSQVFHLIPDGN-SYYVFNDIFRLNYS 124 (125)
T ss_dssp CEEEEEEEEEEETTCSSCEEEEEEEEEEEETT-EEEEEEEEEEEECC
T ss_pred eEEEEEEEEEEECCCCCCccEeEEEEEEEeCC-EEEEEEEEEEEecC
Confidence 999999999999887 8999999999999998 99999999999975
No 6
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=100.00 E-value=4.3e-35 Score=260.68 Aligned_cols=129 Identities=23% Similarity=0.369 Sum_probs=116.0
Q ss_pred CCCHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCc----------ccchhhHHHHHHHHhcC--CCCcceE
Q 012356 9 APSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGS----------MTTVTTMKAINDRILSL--NYEDYTA 76 (465)
Q Consensus 9 ~~~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~----------~~~~~g~~~I~~~~~~l--~~~~~~~ 76 (465)
.|++++||++||+|||++|+++|+.|++||+++|+|+|++.... ...+.|+++|.++|.+| ||++|+|
T Consensus 8 ~p~~~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~~s~~~~~~~s~~~~~d~~~~~~~~G~~~I~~~l~~L~~pf~~~~h 87 (154)
T 2qiy_A 8 GVTVQDICFAFLQNYYERMRTDPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKL 87 (154)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEECTTCC----CCSSCCEEEEESHHHHHHHHHHTHHHHTTEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEccccccccccccccccceEeeCHHHHHHHHHhccCCCCceEE
Confidence 57899999999999999999999999999999999999843221 34789999999999999 9999999
Q ss_pred EEeeeeeeeeCC--CcEEEEEEEEEEcCCCCcccEEEEEEeeecCC-CcEEEEcceEeeecccc
Q 012356 77 EIKTADAQDSYE--KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDK-GGYFVLNDVFRFVEENE 137 (465)
Q Consensus 77 ~i~~~d~q~s~~--~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~-~~y~v~nDifr~~~~~~ 137 (465)
+|.++|||++++ ++|||+|+|+|+.++++.|+|+|||+|+++++ ++|||+||||||+++++
T Consensus 88 ~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~~~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~ 151 (154)
T 2qiy_A 88 KLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFILLPSSNGSTFDITNDIIRFISNSF 151 (154)
T ss_dssp EEEEEEEEEESGGGCEEEEEEEEEEEETTCCCEEEEEEEEEEECC---CEEEEEEEEEEECC--
T ss_pred EEEEEEEEEccCCCCEEEEEEEEEEEECCCCCceEEEEEEEEEeCCCCcEEEEEEEEEEEccee
Confidence 999999999987 89999999999998889999999999999985 58999999999999987
No 7
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=100.00 E-value=5.9e-34 Score=251.56 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeC---
Q 012356 11 SAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSY--- 87 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~--- 87 (465)
.+.+||++||++||++|+++|+.|++||.++|+|+|++. .+.|+++|.++|++||+ |+++|.++|||+++
T Consensus 32 ~a~~vg~~FV~qYY~~~d~~R~~L~~fY~d~S~ls~~g~-----~~~G~~~I~~~l~~Lp~--~~h~I~s~D~qp~~~~~ 104 (154)
T 3nv0_B 32 ELCNESKKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGN-----PINGYDSICEFMKALPS--TQHDIQSLDAQRLPEGV 104 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCC--EEEEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHhcCCcEEEECCe-----ecccHHHHHHHHHhCCC--eEEEEEEEEEEEcCccc
Confidence 567899999999999999999999999999999999986 68999999999999995 79999999999998
Q ss_pred ----CCcEEEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEeeec
Q 012356 88 ----EKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (465)
Q Consensus 88 ----~~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~~~ 134 (465)
+++|||+|+|.|+.++++.|+|+|+|+|+|+++ +|||+||||||+|
T Consensus 105 ~~q~~~~ilI~V~G~l~~~~~~~r~F~QtFvL~p~~~-~y~V~NDifR~vd 154 (154)
T 3nv0_B 105 TGDMSGGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDG-KYKVKSDRFRYVD 154 (154)
T ss_dssp CGGGTTCEEEEEEEEEEETTSCCEEEEEEEEEEEETT-EEEEEEEEEEECC
T ss_pred cCCCCCeEEEEEEEEEEECCCCceeEEEEEEEEEeCC-EEEEEeeEEEecC
Confidence 678999999999999888999999999999986 9999999999986
No 8
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.97 E-value=4.8e-32 Score=237.19 Aligned_cols=119 Identities=23% Similarity=0.380 Sum_probs=110.6
Q ss_pred CCHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeC--
Q 012356 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSY-- 87 (465)
Q Consensus 10 ~~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~-- 87 (465)
..+.+||++||+|||++|+++|+.|++||+++|+|+|+|. .+.|+++|.++|.+||++ +|+|.++|||++.
T Consensus 11 ~~a~~v~~~Fv~~YY~~~d~~r~~L~~~Y~~~S~ls~~g~-----~~~G~~~I~~~l~~Lp~~--~h~i~s~d~q~~~~~ 83 (140)
T 1jkg_A 11 DQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGN-----AVSGQESLSEFFEMLPSS--EFQISVVDCQPVHDE 83 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEETTE-----EEESHHHHHHHHHHSCCE--EEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHhcCCCcEEEECCe-----eecCHHHHHHHHHhCCCc--eeEEEEEEEEEcCCc
Confidence 3688999999999999999999999999999999999986 789999999999999987 5899999999996
Q ss_pred ----CCcEEEEEEEEEEcCCCCcccEEEEEEeeecC---CCcEEEEcceEeeecc
Q 012356 88 ----EKGVIVLVTGCLTGKDNVKKKFTQTFFLAPQD---KGGYFVLNDVFRFVEE 135 (465)
Q Consensus 88 ----~~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~~---~~~y~v~nDifr~~~~ 135 (465)
+++|||+|+|.|+.++++.|+|+|+|+|++++ +++|||+||||||++.
T Consensus 84 ~~~~~~~ilI~V~G~~~~~~~~~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 84 ATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp TSTTCCEEEEEEEEEEEETTSCCEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred ccCCCCeEEEEEEEEEEECCCCceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 58999999999999988999999999999974 1489999999999986
No 9
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.85 E-value=3.1e-21 Score=184.29 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHHHHhhccC-cchhcccccCCceeeecCCCCc---------------------------c-cchhhHH
Q 012356 10 PSAQVVGNAFVEQYYHILHQS-PGLVHRFYQDSSLLSRPDSNGS---------------------------M-TTVTTMK 60 (465)
Q Consensus 10 ~~~~~Vg~~Fv~~YY~~l~~~-p~~l~~fY~~~s~~~~~~~~~~---------------------------~-~~~~g~~ 60 (465)
....+|+..||++||+++|++ |..|.+||+++|+|+|...... + ..+.|.+
T Consensus 12 ~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~~~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~~~~G~~ 91 (250)
T 1jkg_B 12 ENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRL 91 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC------CCCHHHHTTBCCTTTCCCHHHHHHHSEESHH
T ss_pred HHHHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEeCCCCCCccccchhhhhhhccchhcccchhhhhhhhccCHH
Confidence 356789999999999999998 9999999999999999843100 0 2578999
Q ss_pred HHHHHHhcCCCCcceEEEe--eeeeeeeCCCcEEEEEEEEEEcCC----CCcccEEEEEEeeecCCCcEEEEcceEeeec
Q 012356 61 AINDRILSLNYEDYTAEIK--TADAQDSYEKGVIVLVTGCLTGKD----NVKKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (465)
Q Consensus 61 ~I~~~~~~l~~~~~~~~i~--~~d~q~s~~~~i~v~V~G~~~~~~----~~~~~F~q~F~L~~~~~~~y~v~nDifr~~~ 134 (465)
+|.++|.+|| .++|.|. ++|||+..+++|+|+|+|.++..+ ...|.|+|||+|.+..+++|+|+||+||+..
T Consensus 92 ~I~~~l~~LP--~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~ 169 (250)
T 1jkg_B 92 NVVAFLNELP--KTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRN 169 (250)
T ss_dssp HHHHHHTTSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEE
T ss_pred HHHHHHHhCC--CeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEEC
Confidence 9999999999 5677777 899999988899999999999765 5789999999999976568999999999987
Q ss_pred ccc
Q 012356 135 ENE 137 (465)
Q Consensus 135 ~~~ 137 (465)
...
T Consensus 170 ~s~ 172 (250)
T 1jkg_B 170 ASS 172 (250)
T ss_dssp CCH
T ss_pred CCh
Confidence 654
No 10
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.84 E-value=5.1e-21 Score=177.83 Aligned_cols=125 Identities=12% Similarity=0.225 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCc----------------------------------ccc
Q 012356 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGS----------------------------------MTT 55 (465)
Q Consensus 10 ~~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~----------------------------------~~~ 55 (465)
.....|+..||++||+++|++|..|..||+++|+|+|...... ...
T Consensus 8 ~~~~~~~~~Fv~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~~~l 87 (221)
T 1of5_A 8 DALGQSSTDFATNFLNLWDNNREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSSEKSIQQRL 87 (221)
T ss_dssp CTTCHHHHHHHHHHHHHHHHCGGGGGGGEEEEEEEEEEECCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccchhhhhhhh
Confidence 3567899999999999999999999999999999998764110 025
Q ss_pred hhhHHHHHHHHhcCCCCcceEEE------eeeeeeeeCC-CcEEEEEEEEEEcCCC------------------------
Q 012356 56 VTTMKAINDRILSLNYEDYTAEI------KTADAQDSYE-KGVIVLVTGCLTGKDN------------------------ 104 (465)
Q Consensus 56 ~~g~~~I~~~~~~l~~~~~~~~i------~~~d~q~s~~-~~i~v~V~G~~~~~~~------------------------ 104 (465)
+.|.++|.++|.+|| .++|.| .+||||+... ++|||+|+|.+...+.
T Consensus 88 ~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (221)
T 1of5_A 88 SIGQESINSIFKTLP--KTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGY 165 (221)
T ss_dssp CBHHHHHHHHHHHSC--CEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC--------------------------
T ss_pred ccCHHHHHHHHHhCC--CeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccc
Confidence 679999999999999 668999 5999999865 6899999999986543
Q ss_pred --------CcccEEEEEEeeecCCCcEEEEcceEeeecccc
Q 012356 105 --------VKKKFTQTFFLAPQDKGGYFVLNDVFRFVEENE 137 (465)
Q Consensus 105 --------~~~~F~q~F~L~~~~~~~y~v~nDifr~~~~~~ 137 (465)
..|.|.|||+|.|. +++|+|+||+|++-....
T Consensus 166 ~~~~~~~~~~rsF~RTFvL~P~-~~~~~I~nD~l~ir~~s~ 205 (221)
T 1of5_A 166 NSTSNNKLSKKSFDRTWVIVPM-NNSVIIASDLLTVRAYST 205 (221)
T ss_dssp ---CCSCCEEEEEEEEEEEEEE-TTEEEEEEEEEEEEECCC
T ss_pred cccccccCCccceEEEEEEEec-CCeEEEEeeEEEeecCCC
Confidence 47999999999999 459999999999876654
No 11
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.82 E-value=3.5e-20 Score=172.16 Aligned_cols=126 Identities=16% Similarity=0.252 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCc--------------c----------------------
Q 012356 10 PSAQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGS--------------M---------------------- 53 (465)
Q Consensus 10 ~~~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~--------------~---------------------- 53 (465)
.....|+..||++||+++|++|..|..||+++|+|+|...... .
T Consensus 11 ~~~~~~~~~Fl~~Yy~~fDsdR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ri~~~~~r~ 90 (219)
T 1q40_B 11 EDSRNLATNFIANYLKLWDANRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLTRVSSIKARM 90 (219)
T ss_dssp --CHHHHHHHHHHHHHHHHSCGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchhcccchhhhh
Confidence 3468899999999999999999999999999999998753110 0
Q ss_pred -cchhhHHHHHHHHhcCCCCcceEEE------eeeeeeeeC-CCcEEEEEEEEEEcCC----------------------
Q 012356 54 -TTVTTMKAINDRILSLNYEDYTAEI------KTADAQDSY-EKGVIVLVTGCLTGKD---------------------- 103 (465)
Q Consensus 54 -~~~~g~~~I~~~~~~l~~~~~~~~i------~~~d~q~s~-~~~i~v~V~G~~~~~~---------------------- 103 (465)
..+.|.++|.++|.+|| .++|.| .+||||+.. .++|||+|+|.+...+
T Consensus 91 ~~l~~G~~~I~~~l~~LP--kT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~ 168 (219)
T 1q40_B 91 AKLSIGQEQIYKSFQQLP--KTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYH 168 (219)
T ss_dssp HTCEEHHHHHHHHHHTSC--EEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSS
T ss_pred hhhccCHHHHHHHHHHCC--CeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCccccccccccccccccccccc
Confidence 14679999999999999 568889 599999653 4789999999997433
Q ss_pred ---------CCcccEEEEEEeeecCCCcEEEEcceEeeecccc
Q 012356 104 ---------NVKKKFTQTFFLAPQDKGGYFVLNDVFRFVEENE 137 (465)
Q Consensus 104 ---------~~~~~F~q~F~L~~~~~~~y~v~nDifr~~~~~~ 137 (465)
...|.|+|||+|.+..+++|+|+||+|++-....
T Consensus 169 ~~~~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~~~ 211 (219)
T 1q40_B 169 SGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYTS 211 (219)
T ss_dssp SSSCCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECCS
T ss_pred cccccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecCCC
Confidence 2579999999999986669999999999886654
No 12
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=4.7e-19 Score=157.63 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=76.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||+++|+++|+++|++||.|..|.|..+..+ .+++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45699999999999999999999999999999988888766 78999999999999999999998 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
++..+
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87543
No 13
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=2.6e-19 Score=169.56 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccC--CeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFG--PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..++|||+||++++|+++|+++|++|| .|+.|.|..++.+ +++|||||+|.+.++|++||+.| +..|+|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 468999999999999999999999999 9999999888766 88999999999999999999998 9999999999999
Q ss_pred cccc
Q 012356 377 KRAN 380 (465)
Q Consensus 377 ~r~~ 380 (465)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8753
No 14
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=137.92 Aligned_cols=82 Identities=18% Similarity=0.301 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..++++|||+|||+++|+++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345799999999999999999999999999999999887766 78999999999999999999988 9999999999999
Q ss_pred cccc
Q 012356 377 KRAN 380 (465)
Q Consensus 377 ~r~~ 380 (465)
++|.
T Consensus 96 AkPS 99 (99)
T 4fxv_A 96 ARPS 99 (99)
T ss_dssp CCBC
T ss_pred eeCC
Confidence 9863
No 15
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-16 Score=138.61 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
....++|||+|||+++++++|+++|+.||.|..|.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 445799999999999999999999999999999999888765 78999999999999999999998 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 16
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=133.50 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
.+.++|||+|||+++++++|+++|++||.|..|.|..+...+++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4468999999999999999999999999999988887774488999999999999999999999 999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
+...
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7654
No 17
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=8.6e-17 Score=137.56 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+..+ .++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345799999999999999999999999999999877776645 78999999999999999999988 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 987654
No 18
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=127.80 Aligned_cols=82 Identities=24% Similarity=0.383 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||.++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4689999999999999999999999999999888877665 78999999999999999999988 999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8654
No 19
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.67 E-value=3.6e-16 Score=144.11 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHHhhccC-----cchhccccc-CCceee--ecCCC--------------------------------
Q 012356 11 SAQVVGNAFVEQYYHILHQS-----PGLVHRFYQ-DSSLLS--RPDSN-------------------------------- 50 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~~~-----p~~l~~fY~-~~s~~~--~~~~~-------------------------------- 50 (465)
....+...|+++||.++++. |..|..+|+ ++|+++ ..-..
T Consensus 11 ~~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRNl~k~~~~~~ 90 (205)
T 3nv0_A 11 EVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHNVLNQEYFAA 90 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCCGGGCCTTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccccccccccHH
Confidence 46778999999999999987 999999999 678654 21110
Q ss_pred Ccc-cchhhHHHHHHHHhcCCCCcceEEEee--eeeeeeCCCcEEEEEEEEEEcC---------CCCcccEEEEEEeeec
Q 012356 51 GSM-TTVTTMKAINDRILSLNYEDYTAEIKT--ADAQDSYEKGVIVLVTGCLTGK---------DNVKKKFTQTFFLAPQ 118 (465)
Q Consensus 51 ~~~-~~~~g~~~I~~~~~~l~~~~~~~~i~~--~d~q~s~~~~i~v~V~G~~~~~---------~~~~~~F~q~F~L~~~ 118 (465)
-.+ ....|.++|.++|.+|| .++|.+.+ ||||+..+++|+|+|+|.++.. ....|.|+|||+|.|.
T Consensus 91 ~r~~~L~~G~~~I~~~L~~LP--~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~ 168 (205)
T 3nv0_A 91 NRASRISHGAMDIVVALSRLP--ATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPR 168 (205)
T ss_dssp SSCCSCEEHHHHHHHHHHHSC--CEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEEC
T ss_pred HHHHHHhhCHHHHHHHHHhCC--CeEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEEC
Confidence 001 13479999999999999 55788885 8999999888999999999964 3567999999999998
Q ss_pred CCCcEEEEcceEeeecc
Q 012356 119 DKGGYFVLNDVFRFVEE 135 (465)
Q Consensus 119 ~~~~y~v~nDifr~~~~ 135 (465)
.+++|+|+||+|-.-..
T Consensus 169 ~~g~~~I~ND~L~Ir~~ 185 (205)
T 3nv0_A 169 GEGKVAIVSDQLFISSM 185 (205)
T ss_dssp STTCEEEEEEEEEEECC
T ss_pred CCCcEEEEecEEEeeCC
Confidence 76699999999965443
No 20
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.6e-16 Score=128.55 Aligned_cols=84 Identities=21% Similarity=0.311 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
....++|||+|||+++++++|+++|++||.|..|.|..+..+ .++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345699999999999999999999999999999887776644 78999999999999999999998 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 988654
No 21
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.7e-16 Score=129.68 Aligned_cols=85 Identities=22% Similarity=0.369 Sum_probs=75.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEee
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEA 376 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~ 376 (465)
.+...++|||+|||+++++++|+++|++||.|..|.|..++.+ ++++||||+|.+.++|++||+.+...|+|+.|+|++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 3556799999999999999999999999999999887776655 789999999999999999999993389999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++...+
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 986543
No 22
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=127.91 Aligned_cols=85 Identities=22% Similarity=0.318 Sum_probs=77.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
+..+.++|||+|||+++++++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999999888877655 78999999999999999999998 999999999999
Q ss_pred eccccCC
Q 012356 376 AKRANSR 382 (465)
Q Consensus 376 ~~r~~~r 382 (465)
+++++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9988654
No 23
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=7.4e-16 Score=129.59 Aligned_cols=84 Identities=26% Similarity=0.497 Sum_probs=76.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+.++|||+|||+++++++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999988888755 88999999999999999999988 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987654
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.66 E-value=6.3e-17 Score=130.59 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=72.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccC-CeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC--CCcccccceEEeecc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS--PILIGDRPADVEAKR 378 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~--~~~i~g~~i~Ve~~r 378 (465)
.+|||+|||+++|+++|+++|++|| .|..|.|..++.+ .++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 7998777776665 78999999999999999999987 567999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
++++
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=131.17 Aligned_cols=80 Identities=8% Similarity=0.079 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+||++++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4589999999999999999999999999999999888876 88999999999999999999998 999999999999986
Q ss_pred cc
Q 012356 379 AN 380 (465)
Q Consensus 379 ~~ 380 (465)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 26
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.7e-16 Score=126.44 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
..+.++|||+|||+++++++|+++|++||.|..+.|..+...++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999999998888774478999999999999999999988 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++.+
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88654
No 27
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.2e-16 Score=126.79 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
.+.++|||+|||+++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45699999999999999999999999999999877766644 78899999999999999999998 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 88654
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=2.1e-15 Score=126.70 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=77.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
...+.++|||+|||+++++++|+++|++||.|..|.|..+..+ ..+|||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999888877655 78999999999999999999998 999999999999
Q ss_pred eccccCC
Q 012356 376 AKRANSR 382 (465)
Q Consensus 376 ~~r~~~r 382 (465)
+++++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9987654
No 29
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-15 Score=126.86 Aligned_cols=82 Identities=26% Similarity=0.432 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||+++|+++|+++|++||.|..|.|. .+.++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK--NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEC--CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3456999999999999999999999999999996663 33357899999999999999999888 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++.+
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87653
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.2e-16 Score=126.62 Aligned_cols=84 Identities=24% Similarity=0.408 Sum_probs=76.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
...+.++|||+|||+++|+++|+++|++||.|..|.|..+ ....++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456799999999999999999999999999999888877 4478899999999999999999988 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 988654
No 31
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.7e-16 Score=127.30 Aligned_cols=83 Identities=25% Similarity=0.401 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
.+.++|||+|||+++++++|+++|++||.|..+.|..+..+ ++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45699999999999999999999999999999887766555 78899999999999999999888 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 32
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.3e-16 Score=126.48 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEe-EEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKN-GVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~-~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
..++|||+|||+++++++|+++|++||.|..+ .|..+..+ .+++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46999999999999999999999999999987 77766444 78999999999999999999988 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87654
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.9e-16 Score=125.79 Aligned_cols=83 Identities=25% Similarity=0.363 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++++++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+..+..|+|+.|+|++++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45699999999999999999999999999999888776555 78999999999999999999944999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
++..
T Consensus 88 ~~~~ 91 (99)
T 2dgs_A 88 PRDS 91 (99)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7654
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-15 Score=124.91 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
.....++|||+|||+++++++|+++|++||.|..|.|..+..+ +++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999887766543 7899999999999999999988 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cq3_A 90 ATARVM 95 (103)
T ss_dssp CCSSCC
T ss_pred cccCCC
Confidence 988754
No 35
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=9.6e-16 Score=158.26 Aligned_cols=83 Identities=20% Similarity=0.394 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||+++|+++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+.| ++.|+|+.|.|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999888877655 78999999999999999999999 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87654
No 36
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=125.07 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=75.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
.....++|||+|||+++++++|+++|++||.|..|.|..+..+ .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456799999999999999999999999999999887766443 6899999999999999999988 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987553
No 37
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=1.7e-15 Score=125.03 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=76.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccc---cceEE
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGD---RPADV 374 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g---~~i~V 374 (465)
....++|||+|||+++++++|+++|++||.|..|.|..+...+++|||||+|.+.++|++||+.+ +..|.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34579999999999999999999999999999998888775578999999999999999999988 888887 99999
Q ss_pred eeccccCC
Q 012356 375 EAKRANSR 382 (465)
Q Consensus 375 e~~r~~~r 382 (465)
++++++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987654
No 38
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=1.4e-15 Score=128.43 Aligned_cols=80 Identities=31% Similarity=0.605 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+.++|||+|||+++++++|+++|++||.|..+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456799999999999999999999999999999888777555 78999999999999999999999 9999999999998
Q ss_pred cc
Q 012356 377 KR 378 (465)
Q Consensus 377 ~r 378 (465)
+|
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.7e-16 Score=126.78 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+.++|||+|||+++++++|+++|++||.|..+.|..+..+ ++++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345699999999999999999999999999999877776654 78899999999999999999988 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++...+
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987653
No 40
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.4e-15 Score=125.26 Aligned_cols=82 Identities=24% Similarity=0.396 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
....++|||+|||+++++++|+++|++|| |..|.|..+..+ +++|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34469999999999999999999999997 999888888765 78999999999999999999 67 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987654
No 41
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=124.64 Aligned_cols=82 Identities=24% Similarity=0.452 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccC---C-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSN---K-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~---~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
+.++|||+|||+++++++|+++|++||.|..|.|..+.. + .+++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 468999999999999999999999999999998888776 3 67899999999999999999998 999999999999
Q ss_pred eccccCC
Q 012356 376 AKRANSR 382 (465)
Q Consensus 376 ~~r~~~r 382 (465)
+++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9987654
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.64 E-value=5.6e-16 Score=130.57 Aligned_cols=79 Identities=28% Similarity=0.433 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
.++|||+|||+++|+++|+++|++||.|..|+|..+.. .++|||||+|.+.++|++||+.+ +..|+|+.|+|++++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 47899999999999999999999999999998887754 47899999999999999999988 99999999999998865
Q ss_pred C
Q 012356 381 S 381 (465)
Q Consensus 381 ~ 381 (465)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 43
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.7e-16 Score=129.67 Aligned_cols=84 Identities=23% Similarity=0.376 Sum_probs=76.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
..+.++|||+|||+++++++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+..+..|+|+.|+|+++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 344699999999999999999999999999999888877665 7899999999999999999998888999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 44
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=9.8e-16 Score=126.77 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=75.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcc---cccceE
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILI---GDRPAD 373 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i---~g~~i~ 373 (465)
..+.++|||+|||.++++++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+.+ +..+ +|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 445799999999999999999999999999999877766654 78999999999999999999988 8777 899999
Q ss_pred EeeccccCC
Q 012356 374 VEAKRANSR 382 (465)
Q Consensus 374 Ve~~r~~~r 382 (465)
|++++++.+
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987654
No 45
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.9e-16 Score=128.62 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCee--------EeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCccc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIK--------KNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIG 368 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~ 368 (465)
..+.++|||+|||+++++++|+++|++||.|. .|.|..+..+ +++|||||+|.+.++|++||+.+ +..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45679999999999999999999999999998 5777766554 78999999999999999999988 99999
Q ss_pred ccceEEeeccccCC
Q 012356 369 DRPADVEAKRANSR 382 (465)
Q Consensus 369 g~~i~Ve~~r~~~r 382 (465)
|+.|+|++++++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999988654
No 46
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=1e-15 Score=121.98 Aligned_cols=79 Identities=23% Similarity=0.470 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
..+.++|||+|||+++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 456799999999999999999999999999999988888765 7899999999999999999987788899999999864
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=125.54 Aligned_cols=84 Identities=25% Similarity=0.371 Sum_probs=74.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEc-cCC-CcceEEEEEeCChHHHHHHHHhC--CCcccccceEE
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVR-SNK-QGYCFGFVAFETPGSVQSALEAS--PILIGDRPADV 374 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~-~~~-~~~gfaFV~F~~~~~a~~Al~~~--~~~i~g~~i~V 374 (465)
....++|||+|||+++++++|+++|++||.|..|.|..+ ... .++|||||+|.+.++|++||+.+ +..|+|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456799999999999999999999999999999777665 334 78999999999999999999986 88999999999
Q ss_pred eeccccCC
Q 012356 375 EAKRANSR 382 (465)
Q Consensus 375 e~~r~~~r 382 (465)
++++++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987653
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.3e-16 Score=127.02 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
....++|||+|||+++++++|+++|++||.|..|.|..+..+ +.+|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345799999999999999999999999999999777666554 78999999999999999999988 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 988654
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=8.3e-16 Score=122.33 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
+.++|||+|||.++++++|+++|++||.|..+.|..+..+ .++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4689999999999999999999999999999888877655 78999999999999999999988 999999999999988
Q ss_pred cc
Q 012356 379 AN 380 (465)
Q Consensus 379 ~~ 380 (465)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=123.29 Aligned_cols=81 Identities=25% Similarity=0.400 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
....++|||+|||+++++++|+++|++||.|..+.|..+..+ +.++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345799999999999999999999999999999988887765 78999999999999999999988 9999999999998
Q ss_pred ccc
Q 012356 377 KRA 379 (465)
Q Consensus 377 ~r~ 379 (465)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 51
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=125.46 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
..+.++|||+|||+++++++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+..+..|+|+.|+|+++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 456799999999999999999999999999999988887655 7899999999999999999999888999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 93 ~~~~~ 97 (105)
T 2dh8_A 93 TPRGM 97 (105)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 87654
No 52
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=1.1e-15 Score=120.50 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
+++|||+|||.++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++|++.+ +..|+|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999888877655 78999999999999999999988 9999999999999987
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 53
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=125.49 Aligned_cols=81 Identities=14% Similarity=0.229 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeeccc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRA 379 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~ 379 (465)
...++|||+|||+++|+++|+++|++||.+ .|.|.++...+++|||||+|.+.++|++||+..+..|++|.|+|..+.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 346899999999999999999999999954 8888888755889999999999999999996449999999999998876
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
..
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 54
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.8e-15 Score=122.63 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
..+.++|||+|||+++++++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+. ++.|+|+.|+|+++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEec
Confidence 455789999999999999999999999999999988888665 7899999999999999999995 67899999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87654
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-15 Score=123.93 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhc-cCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCc-ccccceEEee
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKI-FGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PIL-IGDRPADVEA 376 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~-i~g~~i~Ve~ 376 (465)
...++|||+|||+++|+++|+++|++ ||.|..+.|..+...+++|||||+|.+.++|++||+.+ +.. |+|+.|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34699999999999999999999999 99999999888874478999999999999999999998 888 9999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 987653
No 56
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=126.79 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCC--eeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CC----ccccc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGP--IKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PI----LIGDR 370 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~--i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~----~i~g~ 370 (465)
+....+|||+|||+++|+++|+++|++||. +..|.|..++.+ +++|||||+|.+.++|++||+.+ +. .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445789999999999999999999999996 456555555554 78999999999999999999998 64 58999
Q ss_pred ceEEeeccc
Q 012356 371 PADVEAKRA 379 (465)
Q Consensus 371 ~i~Ve~~r~ 379 (465)
.|.|++++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 57
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=123.01 Aligned_cols=82 Identities=11% Similarity=0.105 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCee-EeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccc----e
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIK-KNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRP----A 372 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~----i 372 (465)
...++|||+|||+++++++|+++|++||.|. .+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3469999999999999999999999999999 9888887765 78999999999999999999998 99999999 9
Q ss_pred EEeeccccC
Q 012356 373 DVEAKRANS 381 (465)
Q Consensus 373 ~Ve~~r~~~ 381 (465)
+|+++++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999988654
No 58
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=124.90 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccC--CCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSN--KQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~--~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
...++|||+|||+++++++|+++|++|| |..|.|..+.. .+++|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3469999999999999999999999999 99988777665 367899999999999999999 77 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987653
No 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=124.30 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceE
Q 012356 299 EAEGCSIYVRNLAFTTTSTELE----EAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPAD 373 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~ 373 (465)
..+.++|||+|||+++++++|+ ++|++||.|..|.|..+..+ ++||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456899999999999999999 99999999999777665544 899999999999999999988 9999999999
Q ss_pred EeeccccCC
Q 012356 374 VEAKRANSR 382 (465)
Q Consensus 374 Ve~~r~~~r 382 (465)
|++++++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987653
No 60
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=124.98 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+.++|||+|||.++++++|+++|++||.|..|.|..+..+ .++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 345699999999999999999999999999999988887765 78999999999999999999988 9999999999999
Q ss_pred ccccC
Q 012356 377 KRANS 381 (465)
Q Consensus 377 ~r~~~ 381 (465)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 61
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=5e-16 Score=124.81 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=68.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccC--CeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFG--PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
.+|||+|||+++|+++|+++|++|| .|..+.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 9999888888666 88999999999999999999998 999999999999998
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 754
No 62
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.9e-15 Score=123.23 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccc-----cceEE
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGD-----RPADV 374 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g-----~~i~V 374 (465)
..++|||+|||+++++++|+++|++||.|..|.|..+ +||||+|.+.++|++||+.| +..|+| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4699999999999999999999999999999777543 89999999999999999999 999999 99999
Q ss_pred eeccccCC
Q 012356 375 EAKRANSR 382 (465)
Q Consensus 375 e~~r~~~r 382 (465)
++++++.+
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99988654
No 63
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.8e-15 Score=122.96 Aligned_cols=83 Identities=22% Similarity=0.329 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||+++++++|+++|++||.|..|.|..+.+.++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 44579999999999999999999999999999998888775578999999999999999999988 99999999999998
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
+...
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7644
No 64
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=122.57 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeE--------eEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCccccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKK--------NGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDR 370 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~ 370 (465)
..++|||+|||+++++++|+++|++||.|.. +.|..++.+ +++|||||+|.+.++|++||+.+ +..|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 4699999999999999999999999999998 888887665 78999999999999999999988 9999999
Q ss_pred ceEEeecc
Q 012356 371 PADVEAKR 378 (465)
Q Consensus 371 ~i~Ve~~r 378 (465)
.|+|++++
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999874
No 65
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=122.16 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
....++|||+|||.++++++|+++|++||.|..+.|..+..+ ++++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 345699999999999999999999999999999887776654 78899999999999999999998 9999999999998
Q ss_pred cc
Q 012356 377 KR 378 (465)
Q Consensus 377 ~r 378 (465)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=125.00 Aligned_cols=82 Identities=26% Similarity=0.415 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||.++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 34699999999999999999999999999999988887665 78999999999999999999988 99999999999999
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8753
No 67
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=135.27 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccC--CeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFG--PIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
.+.++|||+|||+++|+++|+++|++|| .|..|.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3468999999999999999999999999 8999888888766 88999999999999999999998 999999999999
Q ss_pred ecccc
Q 012356 376 AKRAN 380 (465)
Q Consensus 376 ~~r~~ 380 (465)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98764
No 68
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=3.9e-15 Score=122.61 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++|+++|+++|++||.|..|.|. ++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 346999999999999999999999999999986653 469999999999999999988 999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
++..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7654
No 69
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=123.09 Aligned_cols=82 Identities=22% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||+++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34689999999999999999999999999987777777655 78999999999999999999999 89999999999998
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
+...
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7543
No 70
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.5e-15 Score=124.44 Aligned_cols=84 Identities=24% Similarity=0.410 Sum_probs=75.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-------CCccccc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-------PILIGDR 370 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-------~~~i~g~ 370 (465)
....++|||+|||+++++++|+++|++||.|..|.|..+..+ .++|||||+|.+.++|++||+.+ +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 345789999999999999999999999999999888777665 78999999999999999999976 6889999
Q ss_pred ceEEeeccccCC
Q 012356 371 PADVEAKRANSR 382 (465)
Q Consensus 371 ~i~Ve~~r~~~r 382 (465)
.|+|++++++..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987654
No 71
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=1.5e-15 Score=120.35 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
.+.++|||+|||.++++++|+++|++||.|..+.|..+..+ +.+|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35699999999999999999999999999999888777555 78899999999999999999888 99999999999987
Q ss_pred c
Q 012356 378 R 378 (465)
Q Consensus 378 r 378 (465)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=3.2e-15 Score=120.27 Aligned_cols=82 Identities=28% Similarity=0.447 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++++++|+++|++||.|..+.|..+ ..+.++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34699999999999999999999999999999887763 3368899999999999999999988 999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 73
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=121.98 Aligned_cols=81 Identities=28% Similarity=0.396 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||+++++++|+++|++||.|..+.|..+...++++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34569999999999999999999999999999988888776678999999999999999999987 99999999999987
Q ss_pred cc
Q 012356 378 RA 379 (465)
Q Consensus 378 r~ 379 (465)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 74
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-15 Score=119.15 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++++++|+++|++||.|..+.|. ++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 346999999999999999999999999999997764 589999999999999999988 999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
++..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 75
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.9e-16 Score=129.99 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
+.+.++|||+|||+++++++|+++|++||.|..|.|..+..+ +.+|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345699999999999999999999999999999888777765 78999999999999999999 66 9999999999999
Q ss_pred ccccC
Q 012356 377 KRANS 381 (465)
Q Consensus 377 ~r~~~ 381 (465)
++++.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 98754
No 76
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=126.51 Aligned_cols=81 Identities=23% Similarity=0.373 Sum_probs=73.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||.++++++|+++|++||.|..+.|..+.. .++|||||+|.+.++|++|++.+ +..|+|+.|+|+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 44579999999999999999999999999999977766543 47899999999999999999988 99999999999998
Q ss_pred ccc
Q 012356 378 RAN 380 (465)
Q Consensus 378 r~~ 380 (465)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 865
No 77
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4e-15 Score=122.20 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
....++|||+|||+++++++|+++|+.|+ .+.+..+..+ ++++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44579999999999999999999999875 3446666544 78999999999999999999988 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 998654
No 78
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=3.8e-15 Score=119.00 Aligned_cols=80 Identities=29% Similarity=0.427 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
+.++|||+|||+++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++|| .+ +..|+|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4589999999999999999999999999999888887655 78999999999999999999 77 999999999999998
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=124.78 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=72.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKR 378 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r 378 (465)
..+.++|||+|||+++|+++|+++|++||.|..|.|..+...+++|||||+|.+.++|++||...++.|+|+.|.|..++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 34568999999999999999999999999999988887766678999999999999999999933999999999999765
Q ss_pred c
Q 012356 379 A 379 (465)
Q Consensus 379 ~ 379 (465)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 80
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-15 Score=122.39 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||+++++++|+++|++||.|. |..+...+.+|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 45679999999999999999999999999873 444433378899999999999999999988 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++.+
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=125.25 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC---CCcccccceEEee
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS---PILIGDRPADVEA 376 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~---~~~i~g~~i~Ve~ 376 (465)
...++|||+|||+++|+++|+++|++||.|..|.|.. .+|||||+|++.++|++||+.+ +..|+|+.|+|++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-----~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3469999999999999999999999999999977653 2699999999999999999965 4789999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 987643
No 82
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.60 E-value=2.5e-15 Score=122.14 Aligned_cols=80 Identities=14% Similarity=0.257 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.++|||+|||.++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 589999999999999999999999999999887766554 78999999999999999999988 9999999999999987
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 83
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.60 E-value=2.2e-15 Score=125.71 Aligned_cols=83 Identities=25% Similarity=0.415 Sum_probs=73.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
..+.++|||+|||+++++++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 345699999999999999999999999999999888777654 7899999999999999999999999999999999999
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
.++.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6e-15 Score=118.56 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++++++|+++|+.| .|..+.|..+...+++|||||+|.+.++|++||+ + +..|+|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456999999999999999999999999 9999888887444889999999999999999999 8 999999999999988
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 85
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=2.8e-15 Score=124.94 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+.++|||+|||+++++++|+++|++||.|..+.|..+..+ .++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345799999999999999999999999999999877666554 78999999999999999999988 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987653
No 86
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=3.4e-15 Score=128.45 Aligned_cols=83 Identities=24% Similarity=0.384 Sum_probs=75.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
....++|||+|||+++++++|+++|++||.|..|.|..+..+ +.+|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999888877665 78999999999999999999988 9999999999999
Q ss_pred ccccC
Q 012356 377 KRANS 381 (465)
Q Consensus 377 ~r~~~ 381 (465)
++++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98754
No 87
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.59 E-value=2.6e-15 Score=119.59 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC--CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK--QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~--~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
..++|||+|||.++++++|+++|++||.|..+.|..+..+ +.+|||||+|.+.++|++|++.+ +..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3589999999999999999999999999999888777655 37899999999999999999987 99999999999998
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
++..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 88
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=6.7e-16 Score=126.73 Aligned_cols=81 Identities=10% Similarity=0.049 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccc-cc
Q 012356 301 EGCSIYVRNLAF------TTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGD-RP 371 (465)
Q Consensus 301 ~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g-~~ 371 (465)
..++|||+|||+ ++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 368999999999 9999999999999999999998888875 78999999999999999999988 999999 99
Q ss_pred eEEeeccccC
Q 012356 372 ADVEAKRANS 381 (465)
Q Consensus 372 i~Ve~~r~~~ 381 (465)
|+|.+++++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997754
No 89
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.8e-15 Score=118.17 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||+++++++|+++|++||.|..+.|. ++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3457999999999999999999999999999997663 459999999999999999988 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++.+
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 87654
No 90
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.59 E-value=6.1e-16 Score=134.65 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||+++|+++|+++|++|| |..|.|.++.+.+++|||||+|.+.++|++|| .+ +..|+|+.|+|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999 66877776665588999999999999999999 55 99999999999988
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
.+..
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 91
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=129.51 Aligned_cols=83 Identities=19% Similarity=0.252 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeE--eEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CC----ccccc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK--NGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PI----LIGDR 370 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~----~i~g~ 370 (465)
....++|||+|||+++|+++|+++|++||.|.. |.|..++.+ +++|||||+|.+. +|.+||+.+ +. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999966 778777755 8899999999999 999999999 88 99999
Q ss_pred ceEEeeccccCC
Q 012356 371 PADVEAKRANSR 382 (465)
Q Consensus 371 ~i~Ve~~r~~~r 382 (465)
.|+|++++++.+
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987644
No 92
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=5.4e-15 Score=120.72 Aligned_cols=76 Identities=24% Similarity=0.229 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CC--cccccceEEee
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PI--LIGDRPADVEA 376 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~--~i~g~~i~Ve~ 376 (465)
..+++|||+|||+++|+++|+++|++||.|..+.+. +.||||||+|++.++|.+|++.+ +. .|+|+.|+|++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-----PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-----cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 456899999999999999999999999999997664 24689999999999999999988 44 58999999999
Q ss_pred cccc
Q 012356 377 KRAN 380 (465)
Q Consensus 377 ~r~~ 380 (465)
++.+
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9865
No 93
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.1e-15 Score=124.35 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=75.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH---HHHhccCCeeEeEEEEccCC----CcceEEEEEeCChHHHHHHHHhC-CCccccc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELE---EAFKIFGPIKKNGVQVRSNK----QGYCFGFVAFETPGSVQSALEAS-PILIGDR 370 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~~~v~~~~~~----~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~ 370 (465)
....++|||+|||+++++++|+ ++|++||.|..+.|..+... +++|||||+|.+.++|++||+.| +..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4457899999999999999999 99999999999888766543 46799999999999999999998 9999999
Q ss_pred ceEEeeccccCC
Q 012356 371 PADVEAKRANSR 382 (465)
Q Consensus 371 ~i~Ve~~r~~~r 382 (465)
.|+|++++++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999988763
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6e-15 Score=121.23 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC---CCcccccceEEe
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS---PILIGDRPADVE 375 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~---~~~i~g~~i~Ve 375 (465)
....++|||+|||+++++++|+++|++||.|..+.|.. .+|||||+|++.++|++||+.+ +..|+|+.|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-----GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 34578999999999999999999999999999875542 2699999999999999999975 578999999999
Q ss_pred eccccCC
Q 012356 376 AKRANSR 382 (465)
Q Consensus 376 ~~r~~~r 382 (465)
+++.+.-
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9987643
No 95
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.1e-15 Score=122.30 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=68.8
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-C--CcccccceEE
Q 012356 299 EAEGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-P--ILIGDRPADV 374 (465)
Q Consensus 299 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~--~~i~g~~i~V 374 (465)
..+.++|||+|||+ ++|+++|+++|++||.|..|.|.. .++||||+|++.++|.+||+.+ + ..|+|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-----KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-----SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 34579999999999 999999999999999999976642 3589999999999999999987 3 5699999999
Q ss_pred eeccccCC
Q 012356 375 EAKRANSR 382 (465)
Q Consensus 375 e~~r~~~r 382 (465)
++++...+
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99987544
No 96
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=118.68 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
..+.++|||+|||+++++++|+++|++||.|..+.|. +.++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-----KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-----TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 3456999999999999999999999999999987665 23689999999999999999998 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 88654
No 97
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.5e-14 Score=119.51 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC---CCcccccceEEe
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS---PILIGDRPADVE 375 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~---~~~i~g~~i~Ve 375 (465)
....++|||+|||+++++++|+++|++||.|..+.|.. .++||||+|++.++|.+||+.+ +..|+|+.|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34568999999999999999999999999999966542 3689999999999999999976 456999999999
Q ss_pred eccccCC
Q 012356 376 AKRANSR 382 (465)
Q Consensus 376 ~~r~~~r 382 (465)
+++.+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987543
No 98
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=9.1e-15 Score=119.86 Aligned_cols=76 Identities=29% Similarity=0.433 Sum_probs=69.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccccC
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRANS 381 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~~ 381 (465)
++|||+|||+++|+++|+++|++||.|..+.|..+ +++||||+|.+.++|++||+.+ +..|+|+.|+|++++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999777544 5799999999999999999998 999999999999998865
Q ss_pred C
Q 012356 382 R 382 (465)
Q Consensus 382 r 382 (465)
+
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 99
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3e-15 Score=123.28 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||+++++++|+++|++||.|..+.|..+..+ .++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999988887655 78999999999999999999998 99999999999999
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
+++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8754
No 100
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-14 Score=117.86 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhcc--CCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIF--GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
....++|||+|||+++++++|+++|++| |.|..+.+ .++||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456999999999999999999999999 88888554 3589999999999999999988 999999999999
Q ss_pred eccccCC
Q 012356 376 AKRANSR 382 (465)
Q Consensus 376 ~~r~~~r 382 (465)
+++++.+
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 101
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-16 Score=134.19 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeE--------eEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCccc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK--------NGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIG 368 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~ 368 (465)
..+.++|||+|||+++++++|+++|++||.|.. +.|..+..+ +++|||||+|.+.++|++||+.+ +..|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345799999999999999999999999999988 777776554 78999999999999999999998 99999
Q ss_pred ccceEEeeccccCC
Q 012356 369 DRPADVEAKRANSR 382 (465)
Q Consensus 369 g~~i~Ve~~r~~~r 382 (465)
|+.|+|++++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987653
No 102
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=120.34 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeE-eEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKK-NGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++|+++|+++|++||.|.. +.|..+...+++|||||+|.+.++|++||+..+..|+|+.|+|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 45699999999999999999999999999987 66666644488999999999999999999988899999999999876
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
.+.
T Consensus 93 ~~~ 95 (104)
T 1wg5_A 93 RAE 95 (104)
T ss_dssp TTT
T ss_pred HHH
Confidence 543
No 103
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.1e-15 Score=120.95 Aligned_cols=77 Identities=23% Similarity=0.449 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
..+.++|||+|||+ ++++++|+++|++||.|..+.|. +|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34579999999998 99999999999999999997663 689999999999999999988 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++.+
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987654
No 104
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=9.6e-15 Score=124.35 Aligned_cols=82 Identities=24% Similarity=0.392 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
.+.++|||+|||+++|+++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++|| .+ +..|+|+.|+|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34699999999999999999999999999999988887655 78999999999999999999 67 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
++...
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 87543
No 105
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=9.1e-15 Score=121.12 Aligned_cols=79 Identities=23% Similarity=0.397 Sum_probs=73.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++++++|+++|++||.|..+.|..+...+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4469999999999999999999999999999999888874488999999999999999999988 999999999999875
No 106
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.57 E-value=2.7e-15 Score=121.53 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||+++++++|+++|++||.|..+.+..++.+ +.++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999988777777666 78999999999999999999987 99999999999987
Q ss_pred cc
Q 012356 378 RA 379 (465)
Q Consensus 378 r~ 379 (465)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 107
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.8e-15 Score=123.27 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=69.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC---CCcccccceEEe
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS---PILIGDRPADVE 375 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~---~~~i~g~~i~Ve 375 (465)
....++|||+|||+++|+++|+++|++||.|..+.|.. .+|||||+|++.++|++||+.+ +..|+|+.|+|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-----~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-----GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34568999999999999999999999999999977653 2699999999999999999977 468999999999
Q ss_pred eccccCC
Q 012356 376 AKRANSR 382 (465)
Q Consensus 376 ~~r~~~r 382 (465)
+++.+.-
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9987653
No 108
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.1e-15 Score=123.81 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEcc-CCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~-~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||+++|+++|+++|++||.|..+.+.++. ..+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 346999999999999999999999999998443222222 3367899999999999999999998 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87654
No 109
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=117.65 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=69.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccc--ccceEEee
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIG--DRPADVEA 376 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~--g~~i~Ve~ 376 (465)
...++|||+|||+++++++|+++|++||.|..+.+. . .++||||+|.+.++|++||+.+ +..|+ |+.|+|++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~--~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV--K---GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC--S---SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--C---CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 346899999999999999999999999999996553 2 2689999999999999999988 99999 99999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++++.+
T Consensus 90 a~~~~~ 95 (97)
T 1why_A 90 AKSGPS 95 (97)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 988654
No 110
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=121.37 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=69.4
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC---CCcccccceEE
Q 012356 299 EAEGCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS---PILIGDRPADV 374 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~---~~~i~g~~i~V 374 (465)
....++|||+|||++ +++++|+++|++||.|..|.|. +.+|||||+|++.++|++||+.+ +..|+|+.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345799999999998 9999999999999999997764 34799999999999999999976 46799999999
Q ss_pred eeccccCC
Q 012356 375 EAKRANSR 382 (465)
Q Consensus 375 e~~r~~~r 382 (465)
++++.+.+
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99987654
No 111
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.2e-15 Score=125.34 Aligned_cols=80 Identities=19% Similarity=0.314 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
.+.++|||+|||+++|+++|+++|+.||.|..+.+.++..+ +++|||||+|.+.++|++||+ + +..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45699999999999999999999999999987555555544 789999999999999999999 7 99999999999988
Q ss_pred ccc
Q 012356 378 RAN 380 (465)
Q Consensus 378 r~~ 380 (465)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 112
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=115.79 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=69.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||+++|+++|+++|++||.|..+.|. ++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3457999999999999999999999999999996663 359999999999999999988 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
++...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=5.7e-15 Score=116.73 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=67.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...|||+||++.+|+++|+++|.+||+|..+++.+ ++|||||+|.+.++|++|++.| +..|+|+.|+|+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 58999999999999999999999999999987753 5799999999999999999999 999999999999885
No 114
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=8e-15 Score=123.19 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCe-eEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPI-KKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r 378 (465)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|..+...+++|||||+|.+.++|++||+..+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 456899999999999999999999999999 7777877774488999999999999999999888899999999999987
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
++.
T Consensus 93 ~~~ 95 (114)
T 2cpy_A 93 LED 95 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 115
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=5.4e-15 Score=114.74 Aligned_cols=75 Identities=27% Similarity=0.440 Sum_probs=69.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
++|||+|||+++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+...|+|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 57999999999999999999999999999888777655 7899999999999999999999998899999999875
No 116
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.2e-15 Score=118.52 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||+++++++|+++|++||.|..+.|..+..+ .++|||||+|.+.++|++||+.+ +..|+|+.|+|.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4689999999999999999999999999999888877655 78999999999999999999998 999999998877554
No 117
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=6.9e-15 Score=124.47 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCC---eeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEe
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGP---IKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVE 375 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve 375 (465)
..+.++|||+|||+++|+++|+++|+.||. |..|.|..+.+.+++|||||+|.+.++|++||+..+..|+|+.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 345799999999999999999999999999 88888888777788999999999999999999944999999999999
Q ss_pred ecccc
Q 012356 376 AKRAN 380 (465)
Q Consensus 376 ~~r~~ 380 (465)
++..+
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 118
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.55 E-value=2.3e-14 Score=119.48 Aligned_cols=74 Identities=14% Similarity=0.311 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||++ +++++|+++|++||.|..|.| .++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4589999999999 999999999999999999766 3689999999999999999888 999999999999998
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
...
T Consensus 99 ~~~ 101 (110)
T 1wf1_A 99 EPK 101 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 119
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.2e-14 Score=115.78 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++++++|+++|++||.|. +.+... +.+|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3468999999999999999999999999997 556543 46799999999999999999998 999999999999998
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 120
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=5.9e-15 Score=114.08 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 304 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
+|||+|||+++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+..+..|+|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999877766644 7899999999999999999983399999999999864
No 121
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.5e-14 Score=118.33 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc--------cc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI--------GD 369 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i--------~g 369 (465)
+.+.++|||+|||+++++++|+++|++||.|..+.|..+....++|||||+|.+.++|++||+.+ +..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45579999999999999999999999999999999888874478999999999999999999988 8888 57
Q ss_pred cceEEeecccc
Q 012356 370 RPADVEAKRAN 380 (465)
Q Consensus 370 ~~i~Ve~~r~~ 380 (465)
+.|.|.+++++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 77999988854
No 122
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.55 E-value=3.4e-15 Score=122.38 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEcc-CC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRS-NK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~-~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
...++|||+|||+++++++|+++|++|| |..+.|..+. .+ +++|||||+|.+.++|++|| .+ +..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3469999999999999999999999999 9998877665 23 78999999999999999999 77 9999999999999
Q ss_pred ccccC
Q 012356 377 KRANS 381 (465)
Q Consensus 377 ~r~~~ 381 (465)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98753
No 123
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=1.8e-14 Score=117.40 Aligned_cols=75 Identities=23% Similarity=0.424 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||+ ++++++|+++|++||.|..+.| .+|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3469999999998 9999999999999999999666 2689999999999999999988 99999999999999
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
+++.
T Consensus 93 ~~~~ 96 (97)
T 2xnq_A 93 SSNA 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 124
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.54 E-value=1.6e-14 Score=129.43 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||+++++++|+++|++||.|..|.|..+..+ .++|||||+|.+.++|++||+.+ +..|+|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999888877655 78999999999999999999988 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 87654
No 125
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=9e-15 Score=118.67 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||+++++++|+++|++||.|..+ .....++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3457999999999999999999999999998764 333367899999999999999999998 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++.+
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87654
No 126
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=119.24 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCC------CHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccccc-ce
Q 012356 301 EGCSIYVRNLAFTT------TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDR-PA 372 (465)
Q Consensus 301 ~~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~-~i 372 (465)
..++|||+|||+.+ ++++|+++|++||.|..|.|. ....+++|||||+|.+.++|++||+.+ +..|+|+ .|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 46899999999999 789999999999999997665 323378999999999999999999999 9999998 99
Q ss_pred EEeeccccC
Q 012356 373 DVEAKRANS 381 (465)
Q Consensus 373 ~Ve~~r~~~ 381 (465)
+|+++....
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999987644
No 127
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=1.4e-14 Score=120.51 Aligned_cols=77 Identities=27% Similarity=0.482 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||+++++++|+++|++||.|..+.|. +|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4456999999999999999999999999999997775 589999999999999999988 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++.+
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87653
No 128
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=7.5e-15 Score=122.38 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRAN 380 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~~ 380 (465)
+.++|||+|||+++|+++|+++|+.| .|..|.|.++...+++|||||+|.+.++|++||+..+..|+||.|.|..+..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 35899999999999999999999999 89888887776668899999999999999999954499999999999888654
No 129
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.54 E-value=7.5e-15 Score=127.27 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCC---eeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEE
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGP---IKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADV 374 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~V 374 (465)
..+.++|||+|||+++|+++|+++|++||. |..|.|..+.+.+++|||||+|.+.++|++||+ + +..|+||.|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345699999999999999999999999999 888888887777889999999999999999999 6 99999999999
Q ss_pred eecccc
Q 012356 375 EAKRAN 380 (465)
Q Consensus 375 e~~r~~ 380 (465)
..+.++
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 988654
No 130
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=119.09 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||.++++++|+++|++||.|..|.|..+ ++||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 345799999999999999999999999999999776533 689999999999999999988 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 88654
No 131
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=2.9e-14 Score=122.10 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 301 EGCSIYVRNLAFTTTSTELE----EAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
..++|||+|||+.+++++|+ ++|++||.|..|.+ ....+++|||||+|.+.++|.+||+.+ +..|.|+.|+|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i--~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV--DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE--CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe--ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 36899999999999999876 69999999988544 444478999999999999999999999 999999999999
Q ss_pred eccccC
Q 012356 376 AKRANS 381 (465)
Q Consensus 376 ~~r~~~ 381 (465)
+++.+.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998754
No 132
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=1e-14 Score=122.80 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=63.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccc-----eEE
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRP-----ADV 374 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~-----i~V 374 (465)
..++|||+|||+++++++|+++|++||.|..|.|..+ |||||+|.+.++|++||+.| +..|+|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4699999999999999999999999999999766432 89999999999999999988 99999998 777
Q ss_pred eeccccC
Q 012356 375 EAKRANS 381 (465)
Q Consensus 375 e~~r~~~ 381 (465)
+..+++.
T Consensus 89 ~~~~~~~ 95 (115)
T 3beg_B 89 KVDGPRS 95 (115)
T ss_dssp EECC---
T ss_pred ccCCCCC
Confidence 7766644
No 133
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=117.17 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCC-eeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-C-CcccccceEEeec
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGP-IKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-P-ILIGDRPADVEAK 377 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~-~~i~g~~i~Ve~~ 377 (465)
..++|||+|||+++|+++|+++|++||. |..+.+ ..++||||+|.+.++|++||+.+ + ..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 4689999999999999999999999999 665444 24689999999999999999988 8 8999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++..
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87643
No 134
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-14 Score=119.00 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
..++|||+|||.++++++|+++|++||.|..+.|. +.+|||||+|.+.++|++||+.+ +..|+|+.|+|+++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 46899999999999999999999999999997765 35799999999999999999988 9999999999999876
Q ss_pred c
Q 012356 380 N 380 (465)
Q Consensus 380 ~ 380 (465)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 135
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=5.2e-15 Score=121.35 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||+++|+++|+++|++||.|.. .+.++... +++|||||+|.+.++|++||+ + +..|+|+.|+|++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4689999999999999999999999998876 34344333 788999999999999999999 7 999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 136
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=123.49 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=71.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
....++|||+|||.++++++|+++|++||.|..+.|..+..+ +.+|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345799999999999999999999999999999777666554 78999999999999999999998 9999999999986
Q ss_pred c
Q 012356 377 K 377 (465)
Q Consensus 377 ~ 377 (465)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 4
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.53 E-value=6.7e-15 Score=113.67 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=67.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 304 SIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 304 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
+|||+|||+++++++|+++|++||.|..+.+..+..+ .++|||||+|.+.++|++||+..+..|+|+.|+|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999877766554 7899999999999999999997789999999999864
No 138
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.53 E-value=1.2e-14 Score=125.98 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
.+.++|||+|||+++|+++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34689999999999999999999999999999877666544 78999999999999999999998 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
++...
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 139
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=2.9e-14 Score=121.46 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++++++|+++|++||.|..|.|..+...+++|||||+|.+.++|++||+.+ +..|+|+.|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4469999999999999999999999999999988887774478999999999999999999988 999999999999987
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 140
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.53 E-value=5.9e-15 Score=118.29 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=69.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
++|||+|||.++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.+ |++|++.+ +..|+|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999888776655 78999999999999 99999999 99999999999999875
Q ss_pred CC
Q 012356 381 SR 382 (465)
Q Consensus 381 ~r 382 (465)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 141
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.53 E-value=1.3e-14 Score=121.24 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccC-CeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||+++++++|+++|++|| .|..+.|.. .+++|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 358999999999999999999999999 898865532 146899999999999999999999 999999999999987
Q ss_pred cc
Q 012356 379 AN 380 (465)
Q Consensus 379 ~~ 380 (465)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 142
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.9e-14 Score=112.08 Aligned_cols=75 Identities=28% Similarity=0.376 Sum_probs=67.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC--CCcccccceEEee
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS--PILIGDRPADVEA 376 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~--~~~i~g~~i~Ve~ 376 (465)
....++|||+|||.++++++|+++|++||.|..+.+.. .++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 34569999999999999999999999999999977653 4689999999999999999975 7889999999998
Q ss_pred cc
Q 012356 377 KR 378 (465)
Q Consensus 377 ~r 378 (465)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 143
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.6e-14 Score=118.74 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCC-eeEeEEE-EccCC-CcceEEEEEeCChHHHHHHHHhC---CCcccccceEE
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGP-IKKNGVQ-VRSNK-QGYCFGFVAFETPGSVQSALEAS---PILIGDRPADV 374 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~~~v~-~~~~~-~~~gfaFV~F~~~~~a~~Al~~~---~~~i~g~~i~V 374 (465)
+.++|||+|||+++++++|+++|++||. |..+.|. .+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4699999999999999999999999998 9997665 34443 68999999999999999999987 37899999999
Q ss_pred eeccccCC
Q 012356 375 EAKRANSR 382 (465)
Q Consensus 375 e~~r~~~r 382 (465)
++++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987654
No 144
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=6e-15 Score=122.51 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCC---eeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEee
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGP---IKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEA 376 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~ 376 (465)
.+.++|||+|||+++|+++|+++|+.||. |..|.|..+...+++|||||+|.+.++|++||+..+..|+|+.|+|..
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE 88 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEE
Confidence 45799999999999999999999999988 888777766666789999999999999999999339999999999998
Q ss_pred cccc
Q 012356 377 KRAN 380 (465)
Q Consensus 377 ~r~~ 380 (465)
+.++
T Consensus 89 a~~~ 92 (107)
T 2lmi_A 89 INNE 92 (107)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 8764
No 145
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.52 E-value=3.7e-14 Score=125.87 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||+++++++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34699999999999999999999999999999877776544 78999999999999999999998 99999999999999
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
+++.
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8754
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-13 Score=112.21 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|| ++|+++|+++|++||.|..|.|. +.++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 45689999996 89999999999999999997663 45789999999999999999998 999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
++..
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 147
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.52 E-value=1.4e-14 Score=123.79 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCee--EeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIK--KNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
.+.++|||+|||+++|+++|+++|+.| .|. .|.|..+.+.+++|||||+|.+.++|++||+.++..|+||.|+|..+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 346889999999999999999999999 676 77776666568899999999999999999997799999999999887
Q ss_pred ccc
Q 012356 378 RAN 380 (465)
Q Consensus 378 r~~ 380 (465)
.++
T Consensus 119 ~~~ 121 (126)
T 2hgm_A 119 SQE 121 (126)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 148
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=123.55 Aligned_cols=82 Identities=23% Similarity=0.237 Sum_probs=71.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCe----eEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEE
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPI----KKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADV 374 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~V 374 (465)
..+.++|||+|||+++|+++|+++|++||.| ..|.|..+...+++|||||+|.+.++|++||+..+..|++|.|.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 3457999999999999999999999999985 577777775558899999999999999999998788999999999
Q ss_pred eecccc
Q 012356 375 EAKRAN 380 (465)
Q Consensus 375 e~~r~~ 380 (465)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 877653
No 149
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.51 E-value=1.6e-14 Score=113.52 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=63.7
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccccc-ceE
Q 012356 302 GCSIYVRNLAFTT------TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDR-PAD 373 (465)
Q Consensus 302 ~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~-~i~ 373 (465)
+++|||+|||+.+ ++++|+++|++||.|..+.|. +...+++|||||+|.+.++|++||+.+ +..|+|+ .|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3789999999999 779999999999999997654 222378999999999999999999999 9999999 887
Q ss_pred E
Q 012356 374 V 374 (465)
Q Consensus 374 V 374 (465)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 150
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.7e-14 Score=119.45 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++++++|+++|++||.|..|.|. ..++||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-----EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-----SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 346899999999999999999999999999886543 25689999999999999999998 999999999999987
Q ss_pred cc
Q 012356 379 AN 380 (465)
Q Consensus 379 ~~ 380 (465)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 151
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.49 E-value=2.9e-14 Score=117.03 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeeccc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRA 379 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~ 379 (465)
...++|||+|||+++++++|+++|++||.|..+.|..+...+++|||||+|.+.++|++||+ .+..|+|+.|.|..+.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 34689999999999999999999999999999999888744789999999999999999999 88899999999998876
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 152
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.49 E-value=7e-14 Score=123.14 Aligned_cols=79 Identities=29% Similarity=0.416 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
....++|||+|||+++|+++|+++|++||.|..+.|..+ ++|||||+|.+.++|.+||+.+ +..|+|+.|+|+++
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345699999999999999999999999999999766433 5799999999999999999988 99999999999999
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
+++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 153
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.48 E-value=1e-13 Score=116.37 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
..++|||+|||+++++++|+++|++||.|..+.|..+ ...+|||||+|.+.++|.+||+.+ +..|+|+.|+|+++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3589999999999999999999999999999777643 356899999999999999999988 9999999999999986
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 54
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=111.49 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeE-EEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNG-VQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~-v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||+++++++|+++|++||.|..++ |..+..+ +.|||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~---~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET---AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS---EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC---CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 468999999999999999999999999999973 5444332 44999999999999999988 999999999999998
Q ss_pred cc
Q 012356 379 AN 380 (465)
Q Consensus 379 ~~ 380 (465)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 155
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=99.47 E-value=3.9e-14 Score=124.92 Aligned_cols=102 Identities=8% Similarity=0.019 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHHhhccCcc-----hhc------ccc----cCCceeeecCCCCcccch------hhHHHHHHHHhc
Q 012356 10 PSAQVVGNAFVEQYYHILHQSPG-----LVH------RFY----QDSSLLSRPDSNGSMTTV------TTMKAINDRILS 68 (465)
Q Consensus 10 ~~~~~Vg~~Fv~~YY~~l~~~p~-----~l~------~fY----~~~s~~~~~~~~~~~~~~------~g~~~I~~~~~~ 68 (465)
.+..+.+..|++.||..||+.+. .|. ++| .+++.|+|+|. .+ .|+++|.+++..
T Consensus 23 ~~~~r~aE~F~K~yyasLD~~r~~~~~~ql~~v~~f~~ly~~~l~~~a~liwNGn-----p~~~~~~~~gr~~fqk~w~~ 97 (201)
T 1q42_A 23 QDPTQQLEPFLKRFLASLDLLYTQPTSQPFPNVESYATQLGSNLKRSSAIIVNGQ-----PIIPSPQEDCKLQFQKKWLQ 97 (201)
T ss_dssp CCGGGTHHHHHHHHHHHHSCCCCCCTTCSSCCHHHHHTTTTTTEEEEEEEEETTE-----ECCCCSSCCHHHHHHHHHHT
T ss_pred CCcchhHHHHHHHHHHHhcccccccchhhccchhHHHHHhccccCCccEEEEcCc-----ccccccccccHHHHHHHHHh
Confidence 36778899999999999998887 888 788 68899999998 56 899999999999
Q ss_pred CCCCcceEEEeeeeeeeeCC-CcEEEEEEEEEEcCCCCcccEEEEEEeeec
Q 012356 69 LNYEDYTAEIKTADAQDSYE-KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQ 118 (465)
Q Consensus 69 l~~~~~~~~i~~~d~q~s~~-~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~ 118 (465)
|| .+.|.|.++|||+.++ +.+||+|.|.|+.++...++|-|+|.|..+
T Consensus 98 lP--~SqHqL~SlDahpIpGq~T~lI~asGkVrFDesgr~~fgQsf~Lta~ 146 (201)
T 1q42_A 98 TP--LSSHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSGRNRLGESADLFQE 146 (201)
T ss_dssp SC--CEEEEEEEEEEEEETTTTEEEEEEEEEEEEBCSSCCTTSCCC-----
T ss_pred CC--CcceeeeeeecceeCCCcEEEEEEeEEEEECCCCcCcCCCcEEEecc
Confidence 99 6699999999999975 469999999999999999999999999876
No 156
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=109.91 Aligned_cols=76 Identities=22% Similarity=0.381 Sum_probs=66.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
..++|||+|||+++++++|+++|++||.|..| .++..+ .+ ||||+|.+.++|++||+ + +..|+|+.|+|+.+..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~-g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDK-GV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSS-CC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCC-Cc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 45899999999999999999999999999984 454443 22 99999999999999999 8 9999999999998765
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
+.
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 157
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=5e-14 Score=114.40 Aligned_cols=80 Identities=25% Similarity=0.325 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEE
Q 012356 300 AEGCSIYVRNLAFTTTSTELE----EAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADV 374 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~V 374 (465)
...++|||+|||.++++++|+ ++|++||.|..+.|. ....++|||||+|.+.++|++|++.+ +..|+|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC--HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE--cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 346999999999999999999 999999999986553 22256799999999999999999988 99999999999
Q ss_pred eeccccC
Q 012356 375 EAKRANS 381 (465)
Q Consensus 375 e~~r~~~ 381 (465)
++++++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998754
No 158
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.47 E-value=7.3e-14 Score=112.00 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=61.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecc
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKR 378 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r 378 (465)
....++|||+|||+++|+++|+++|++||.|..|.|.. +++|||||+|.+.++|+++ ....+.++|+.|.|..++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~----~srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK----PFRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS----SCCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee----CCCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEcC
Confidence 34569999999999999999999999999999976654 3689999999999999843 222445679999999988
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.46 E-value=1.8e-13 Score=125.04 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=72.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRAN 380 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~~ 380 (465)
.++|||+|||+++|+++|+++|+.||.|..+.|..+..+ .++|||||+|.+.++|.+||+.++..|+|+.|.|.++.++
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC--
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCCh
Confidence 489999999999999999999999999999888887655 7899999999999999999998899999999999999887
Q ss_pred CC
Q 012356 381 SR 382 (465)
Q Consensus 381 ~r 382 (465)
..
T Consensus 184 ~~ 185 (196)
T 1l3k_A 184 QE 185 (196)
T ss_dssp --
T ss_pred hH
Confidence 64
No 160
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.5e-14 Score=112.68 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=64.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRAN 380 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~~ 380 (465)
..++|||+|||+++++++|+++|++||.|..+.|.. .++|||||+|.+.++|++++.. .+.++|+.|+|.+++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~----~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK----PFRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS----SCCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec----CCCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 359999999999999999999999999999966543 2679999999999999865332 55668999999988876
Q ss_pred CC
Q 012356 381 SR 382 (465)
Q Consensus 381 ~r 382 (465)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 161
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=120.84 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEe------EEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceE
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKN------GVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPAD 373 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~------~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~ 373 (465)
..++|||+|||+++|+++|+++|++||.|..+ .|.+....+++|||||+|.+.++|.+||+.+ +..|+|+.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 35899999999999999999999999998764 2333334478999999999999999999988 9999999999
Q ss_pred EeeccccC
Q 012356 374 VEAKRANS 381 (465)
Q Consensus 374 Ve~~r~~~ 381 (465)
|+++++..
T Consensus 124 V~~a~~~~ 131 (143)
T 3egn_A 124 VQFARSAR 131 (143)
T ss_dssp EEECCCSC
T ss_pred EEECCCCC
Confidence 99998653
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.45 E-value=3.7e-13 Score=119.47 Aligned_cols=77 Identities=21% Similarity=0.188 Sum_probs=68.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccc--cceEEeecc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGD--RPADVEAKR 378 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g--~~i~Ve~~r 378 (465)
..+|||+||++.+|+++|+++|++||.|++|.|..+ ..++||||+|.+.++|++|++.| +..|.| +.|+|++++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 478999999999999999999999999999776432 25789999999999999999999 999955 999999999
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=2e-13 Score=123.79 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++++++|+++|++||.|..|.|..+....++|||||+|.+.++|++||+.+ +..|+|+.|+|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4579999999999999999999999999999988877764478999999999999999999998 999999999999987
Q ss_pred cc
Q 012356 379 AN 380 (465)
Q Consensus 379 ~~ 380 (465)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 64
No 164
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=1.5e-13 Score=109.73 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
..++|||+|||+++++++|+++|++| .|..+.|. +++|||||+|.+.++|++||+.+ +..|+|+.|+|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35899999999999999999999999 99887663 46799999999999999999988 9999999999999876
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.43 E-value=3.5e-13 Score=125.66 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.++|||+|||+++|+++|+++|++||.|..|.|..+..+ +++|||||+|.+.++|++||+.+ +..+.|+.|+|..+..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 589999999999999999999999999999998887766 78999999999999999999998 8899999999988765
Q ss_pred c
Q 012356 380 N 380 (465)
Q Consensus 380 ~ 380 (465)
.
T Consensus 95 ~ 95 (213)
T 4f02_A 95 D 95 (213)
T ss_dssp C
T ss_pred c
Confidence 3
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.43 E-value=4.2e-13 Score=122.61 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=74.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~ 377 (465)
..+.++|||+|||+++|+++|+++|+.||.|..|.|..+..+ .++|||||+|.+.++|++||+..+..|+|+.|.|..+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 345799999999999999999999999999999888887665 7899999999999999999998899999999999988
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
....
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 7643
No 167
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=4.5e-13 Score=114.54 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=68.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceE-EEEEeCChHHHHHHHHhC-CCcccc--cceEEeec
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCF-GFVAFETPGSVQSALEAS-PILIGD--RPADVEAK 377 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gf-aFV~F~~~~~a~~Al~~~-~~~i~g--~~i~Ve~~ 377 (465)
-.+|||+||++.+|+++|+++|++||.|.+|.|..+ .++| |||+|.+.++|++|++.| +..|.| +.|+|+++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 478999999999999999999999999999766432 3577 999999999999999999 999987 89999999
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8754
No 168
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.8e-13 Score=114.25 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=69.1
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCC----hHH----HHHHHH--hC-CCc
Q 012356 303 CSIYVRNL----AFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFET----PGS----VQSALE--AS-PIL 366 (465)
Q Consensus 303 ~~lfV~nL----p~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~----~~~----a~~Al~--~~-~~~ 366 (465)
+.|||+|| |+.+++++|+++|+.||+|.+|.+..|..+ +++|||||+|.+ ++. |.+|+. .+ +..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 999999999999999999999999999999 999999999996 333 788888 66 999
Q ss_pred ccccceEEeeccc
Q 012356 367 IGDRPADVEAKRA 379 (465)
Q Consensus 367 i~g~~i~Ve~~r~ 379 (465)
|+|+.|+|...+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.41 E-value=9.5e-13 Score=116.62 Aligned_cols=78 Identities=21% Similarity=0.343 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||.++++++|+++|++||.|..+.+..+..+ .++|||||+|.+.++|.+||+.+ +..|+|+.|+|.+++
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 4689999999999999999999999999999888887655 78999999999999999999988 999999999999986
No 170
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=2.2e-12 Score=117.93 Aligned_cols=83 Identities=14% Similarity=0.286 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
...++|||+|||+++++++|+++|++||.|..+.|..+..+ .++|||||+|.+.++|.+||+.+ +..|+|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45699999999999999999999999999999888877644 78999999999999999999988 99999999999999
Q ss_pred cccCC
Q 012356 378 RANSR 382 (465)
Q Consensus 378 r~~~r 382 (465)
+++.+
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88654
No 171
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=1.3e-12 Score=111.10 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=66.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceE-EEEEeCChHHHHHHHHhC-CCcccc--cceEEeec
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCF-GFVAFETPGSVQSALEAS-PILIGD--RPADVEAK 377 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gf-aFV~F~~~~~a~~Al~~~-~~~i~g--~~i~Ve~~ 377 (465)
...|||+||++.+|+++|+++|++||.|..|.|.. + .|| |||+|.+.++|.+|++.| +..|.| +.|+|+++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 35689999999999999999999999999987743 2 276 999999999999999999 999977 68999999
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.40 E-value=5.7e-13 Score=124.26 Aligned_cols=79 Identities=28% Similarity=0.418 Sum_probs=72.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRAN 380 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~ 380 (465)
.++|||+|||+++|+++|+++|++||.|..+.|..+.. .++|||||+|.+.++|++||+.| +..|+|+.|+|++++++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 47899999999999999999999999999998887654 47899999999999999999998 99999999999999875
Q ss_pred C
Q 012356 381 S 381 (465)
Q Consensus 381 ~ 381 (465)
.
T Consensus 182 ~ 182 (213)
T 4f02_A 182 K 182 (213)
T ss_dssp H
T ss_pred c
Confidence 3
No 173
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.40 E-value=8e-13 Score=121.53 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~ 379 (465)
..++|||+|||+++|+++|+++|++||.|..|.|..+..++++|||||+|++.++|++||+.++..|+|+.|.|..++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 4689999999999999999999999999999888877666789999999999999999998887799999999998765
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.39 E-value=1.1e-12 Score=116.35 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=73.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.++|||+|||.++++++|+++|+.||.|..+.+..+..+ +++|||||+|.+.++|++||+.+ +..|+|+.|+|.++++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 489999999999999999999999999999888877644 78899999999999999999987 9999999999999886
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 175
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.5e-13 Score=111.45 Aligned_cols=76 Identities=11% Similarity=0.048 Sum_probs=66.0
Q ss_pred CCCEEEE--cCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc-----cccce
Q 012356 301 EGCSIYV--RNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI-----GDRPA 372 (465)
Q Consensus 301 ~~~~lfV--~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i-----~g~~i 372 (465)
..++||| +||++++++++|+++|++||.|..+.|. . .+|||||+|.+.++|++|++.| +.+| .|+.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~--~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP--P---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC--T---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe--C---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 3588999 7799999999999999999999885442 2 3689999999999999999999 8887 68999
Q ss_pred EEeeccccC
Q 012356 373 DVEAKRANS 381 (465)
Q Consensus 373 ~Ve~~r~~~ 381 (465)
+|.+++..+
T Consensus 99 ~v~~a~~~p 107 (114)
T 2cq2_A 99 YLNFVEKVQ 107 (114)
T ss_dssp EEEEESCCC
T ss_pred EEEecccCc
Confidence 999987543
No 176
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=104.48 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=63.0
Q ss_pred CEEEEcCCCCCCCHHH----HHHHHhcc-CCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEee
Q 012356 303 CSIYVRNLAFTTTSTE----LEEAFKIF-GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEA 376 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~----L~~~F~~~-G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~ 376 (465)
+.|||+|||+++++++ |+++|++| |.|.+| ..|||||.|.+.++|++|++.| +..|.||.|+|.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 4499999999999988 55899999 599884 1299999999999999999999 9999999999999
Q ss_pred ccccCC
Q 012356 377 KRANSR 382 (465)
Q Consensus 377 ~r~~~r 382 (465)
++.++.
T Consensus 81 A~~~sd 86 (96)
T 2diu_A 81 TPKNRE 86 (96)
T ss_dssp SCCSCC
T ss_pred cCCCcc
Confidence 998654
No 177
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.3e-13 Score=112.55 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC----CcceEEEEEeCChHHHHHHHHhCCCcccccceEEee
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK----QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEA 376 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~----~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~ 376 (465)
..++|||+|||+++|+++|+++|++||.|. +.+..+..+ +++|||||+|.+.++|++||+.+ ..++|+.|.+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEecc
Confidence 468999999999999999999999999998 555555432 67899999999999999999998 347888887765
Q ss_pred cc
Q 012356 377 KR 378 (465)
Q Consensus 377 ~r 378 (465)
..
T Consensus 85 ~~ 86 (114)
T 2dnl_A 85 SP 86 (114)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.38 E-value=6.8e-13 Score=105.29 Aligned_cols=70 Identities=21% Similarity=0.402 Sum_probs=62.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIF----G-------PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIG 368 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~ 368 (465)
..++|||+|||+++++++|+++|++| | .|..+.+. +.+|||||+|.+.++|++|| .+ +..|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-----~~kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-----SSSSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-----CCCcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 46899999999999999999999999 8 88886553 23699999999999999999 77 99999
Q ss_pred ccceEEee
Q 012356 369 DRPADVEA 376 (465)
Q Consensus 369 g~~i~Ve~ 376 (465)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999973
No 179
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.38 E-value=1.4e-12 Score=121.00 Aligned_cols=82 Identities=20% Similarity=0.305 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||.++++++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|.+||+.+ +..|+|+.|+|++++
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 3589999999999999999999999999999888877655 78999999999999999999988 999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
+...
T Consensus 204 ~~~~ 207 (216)
T 2qfj_A 204 TPPM 207 (216)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8654
No 180
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=8.4e-13 Score=117.42 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.++|||+|||.++++++|+++|++||.|..+.+..+..+ +++|||||+|.+.++|++|++.+ +..|+|+.|+|.++++
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 589999999999999999999999999999887776544 68899999999999999999987 9999999999999886
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
..
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 181
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1e-12 Score=116.48 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=71.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccccC
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRANS 381 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~~~ 381 (465)
++|||+|||.++|+++|+++|++||.|..+.|..+...+++|||||+|.+.++|++|++.+ +..|.|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999988877766678999999999999999999888 999999999999987654
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.37 E-value=7.5e-13 Score=117.74 Aligned_cols=79 Identities=22% Similarity=0.383 Sum_probs=71.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeecccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRAN 380 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~~ 380 (465)
.++|||+|||+++++++|+++|++||.|..+.|..+..+ .++|||||+|.+.++|.+||+..+..|+|+.|+|.++.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 478999999999999999999999999999877776544 7899999999999999999983389999999999999875
No 183
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.9e-12 Score=115.68 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
.++|||+|||.++++++|+++|++||.|..+.|..+..+ .++|||||+|.+.++|.+|++.+ +..|+|+.|+|+++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 689999999999999999999999999999888877644 78999999999999999999988 99999999999986
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.36 E-value=1.5e-12 Score=110.53 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=67.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|| ++|+++|+++|++||.|..|.|. ..+|||||+|.+.++|++||+.+ +..|+|+.|+|++++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 34699999996 69999999999999999987664 45799999999999999999988 999999999999998
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
++..
T Consensus 110 ~~~~ 113 (121)
T 2bz2_A 110 KQPM 113 (121)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.35 E-value=1.3e-12 Score=121.20 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=69.0
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLA-FTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
++++|||+||+ +.+++++|+++|++||.|.+|+|..+ .+|||||+|.+.++|++||+.| +..|.|+.|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46899999999 89999999999999999999766432 3799999999999999999998 999999999999987
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
...
T Consensus 79 ~~~ 81 (205)
T 3tyt_A 79 QPA 81 (205)
T ss_dssp CSC
T ss_pred CCc
Confidence 543
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.32 E-value=3e-12 Score=118.74 Aligned_cols=81 Identities=28% Similarity=0.440 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
.+.++|||+|||.++|+++|+++|++||.|..|.|..+..+ +.+|||||+|.+.++|++||+.+ +..|+|+.|+|...
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999887766544 78999999999999999999987 99999999999877
Q ss_pred ccc
Q 012356 378 RAN 380 (465)
Q Consensus 378 r~~ 380 (465)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 187
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.31 E-value=8.3e-12 Score=110.90 Aligned_cols=77 Identities=22% Similarity=0.357 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccc--cceEEee
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGD--RPADVEA 376 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g--~~i~Ve~ 376 (465)
..++|||+|||.++++++|+++|++||.|..+.|..+..+ .++|||||+|.+.++|.+|++.+ +..|+| +.|+|.+
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 3589999999999999999999999999999888877644 78899999999999999999988 999977 9999987
Q ss_pred c
Q 012356 377 K 377 (465)
Q Consensus 377 ~ 377 (465)
+
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 188
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=6.3e-12 Score=112.36 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC---CcceEEEEEeCChHHHHHHHHhC-CCccc---ccceE
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK---QGYCFGFVAFETPGSVQSALEAS-PILIG---DRPAD 373 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~---~~~gfaFV~F~~~~~a~~Al~~~-~~~i~---g~~i~ 373 (465)
+.++|||+|||+++|+++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+.+ +..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999988887766 67899999999999999999988 76664 57788
Q ss_pred EeeccccC
Q 012356 374 VEAKRANS 381 (465)
Q Consensus 374 Ve~~r~~~ 381 (465)
+..+....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 87776543
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=6.8e-12 Score=112.16 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccc---ccceEEee
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIG---DRPADVEA 376 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~---g~~i~Ve~ 376 (465)
..++|||+|||+++|+++|+++|++||.|..+.|..+.+..++|||||+|.+.++|.+||+.+ +..+. ++.|+|.+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 358999999999999999999999999999988887766578999999999999999999998 77665 49999987
Q ss_pred c
Q 012356 377 K 377 (465)
Q Consensus 377 ~ 377 (465)
+
T Consensus 174 a 174 (175)
T 3nmr_A 174 A 174 (175)
T ss_dssp C
T ss_pred c
Confidence 6
No 190
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.30 E-value=2.5e-12 Score=114.34 Aligned_cols=79 Identities=23% Similarity=0.490 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhCCCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEASPILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~~r~ 379 (465)
+.++|||+|||+++|+++|+++|++||.|..+.|..+..+ +++|||||+|.+.++|++||+. +..|+|+.|.|..+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 4689999999999999999999999999999877766554 7899999999999999999996 5788999999988765
Q ss_pred c
Q 012356 380 N 380 (465)
Q Consensus 380 ~ 380 (465)
+
T Consensus 81 ~ 81 (167)
T 2cjk_A 81 R 81 (167)
T ss_dssp H
T ss_pred h
Confidence 3
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.30 E-value=2.5e-11 Score=117.61 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=69.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccc-ccceEEe
Q 012356 298 EEAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIG-DRPADVE 375 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~-g~~i~Ve 375 (465)
.....++|||+|||.++++++|+++|++||.|..+.|..++ +|||||+|.+.++|.+||+.+ +..|+ |+.|+|+
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 34557999999999999999999999999999997775322 589999999999999999999 99998 9999999
Q ss_pred ecc
Q 012356 376 AKR 378 (465)
Q Consensus 376 ~~r 378 (465)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.30 E-value=3.6e-12 Score=114.38 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
..++|||+|||+++++++|+++|++||.|..+ .....++|||||+|.+.++|.+||+.+ +..|+|+.|+|+++++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 46899999999999999999999999998763 333378999999999999999999988 9999999999999987
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
++
T Consensus 174 k~ 175 (175)
T 1fje_B 174 KG 175 (175)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.28 E-value=1.3e-11 Score=109.37 Aligned_cols=77 Identities=22% Similarity=0.303 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccc--eEEee
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRP--ADVEA 376 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~--i~Ve~ 376 (465)
..++|||+|||.++++++|+++|++||.|..+.+..+..+ .++|||||+|.+.++|.+|++.+ +..|+|+. |+|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 3588999999999999999999999999999888877644 77999999999999999999988 99999975 77776
Q ss_pred c
Q 012356 377 K 377 (465)
Q Consensus 377 ~ 377 (465)
+
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.28 E-value=1.3e-11 Score=102.05 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHHHhccCCeeEeEEEEccCC--CcceEEEEEeCChHHHHHHHHhC-CCcccccce
Q 012356 301 EGCSIYVRNLAF-----TTTSTELEEAFKIFGPIKKNGVQVRSNK--QGYCFGFVAFETPGSVQSALEAS-PILIGDRPA 372 (465)
Q Consensus 301 ~~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~~~v~~~~~~--~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i 372 (465)
..+.|+|+||.. +.++++|+++|++||.|.++.|..+.+. +++||+||+|.+.++|.+|++.| +..|+||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 468999999963 2378999999999999999888776542 67999999999999999999999 999999999
Q ss_pred EEeeccc
Q 012356 373 DVEAKRA 379 (465)
Q Consensus 373 ~Ve~~r~ 379 (465)
+|+++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999875
No 195
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.27 E-value=1.3e-11 Score=119.60 Aligned_cols=80 Identities=25% Similarity=0.327 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEE
Q 012356 300 AEGCSIYVRNLAFTTTSTELE----EAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADV 374 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~V 374 (465)
...++|||+|||+++|+++|+ ++|++||.|..|.|. +..+++|||||+|.+.++|++||+.+ +..|.|+.|+|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVS--RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc--CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 447999999999999999977 899999999996654 34468899999999999999999998 99999999999
Q ss_pred eeccccC
Q 012356 375 EAKRANS 381 (465)
Q Consensus 375 e~~r~~~ 381 (465)
++++...
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9987654
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.26 E-value=1.1e-11 Score=116.82 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 300 AEGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
.+.++|||+|||+ ++++++|+++|++||.|..|.|..+. +|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3469999999999 99999999999999999997665432 689999999999999999987 99999999999998
Q ss_pred ccc
Q 012356 378 RAN 380 (465)
Q Consensus 378 r~~ 380 (465)
+..
T Consensus 108 ~~~ 110 (229)
T 2adc_A 108 KHQ 110 (229)
T ss_dssp SCC
T ss_pred cCc
Confidence 865
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=9.4e-12 Score=117.54 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=68.1
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc-
Q 012356 299 EAEGCSIYVRNLAFTT---------TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI- 367 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i- 367 (465)
....++|||+||+..+ ++++|+++|++||.|..|.|. ..+|||||+|.+.++|+.|++.| +..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-----~~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-----ESKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-----GGGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-----CCCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 3457999999999998 799999999999999998775 24799999999999999999999 8888
Q ss_pred -----------cccceEEeeccccCC
Q 012356 368 -----------GDRPADVEAKRANSR 382 (465)
Q Consensus 368 -----------~g~~i~Ve~~r~~~r 382 (465)
.|+.|.|.+++..+.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987553
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=6.6e-11 Score=98.77 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCC-----------HHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcc
Q 012356 300 AEGCSIYVRNLAFTTT-----------STELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILI 367 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i 367 (465)
...+.|+|+||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++||+.+ +..|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3468999999944332 5899999999999999754 333 47899999999999999999999 9999
Q ss_pred cccceEEeeccccCC
Q 012356 368 GDRPADVEAKRANSR 382 (465)
Q Consensus 368 ~g~~i~Ve~~r~~~r 382 (465)
+|+.|+|+++.++..
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999987543
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.21 E-value=1.8e-11 Score=119.21 Aligned_cols=80 Identities=30% Similarity=0.468 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHhccCCeeEeEEEEccC--CCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 300 AEGCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSN--KQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 300 ~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~~--~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
...++|||+|||++ +++++|+++|+.||.|..+.|..+.. ..++|||||+|.+.++|.+|| .+ +..|+|+.|.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 34689999999999 99999999999999999988777665 478899999999999999999 88 999999999999
Q ss_pred ecccc
Q 012356 376 AKRAN 380 (465)
Q Consensus 376 ~~r~~ 380 (465)
+++++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99875
No 200
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.20 E-value=3.3e-11 Score=116.88 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTT-TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~-te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||+++ ++++|+++|+.||.|..+.|..+.+.+++|||||+|.+.++|.+||+.+ +..|+|+.|+|.+++
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence 46899999999995 9999999999999999988887766678999999999999999999988 999999999999998
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
++.
T Consensus 263 ~~~ 265 (284)
T 3smz_A 263 PGP 265 (284)
T ss_dssp SSS
T ss_pred CCC
Confidence 754
No 201
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.20 E-value=1.3e-11 Score=113.21 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAF-TTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
+.++|||+|||+ ++++++|+++|++||.|..|.|..+. +|||||+|.+.++|++||+.+ +..|+|+.|+|.+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 358999999999 99999999999999999986554322 689999999999999999987 999999999999988
Q ss_pred ccC
Q 012356 379 ANS 381 (465)
Q Consensus 379 ~~~ 381 (465)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 202
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.17 E-value=7.6e-11 Score=114.33 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC-CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK-QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~-~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.++|||+|||+++|+++|+++|+.||.|..+.|..+..+ .++|||||+|.+.++|.+|++.+ +..|+|+.|.|.++.+
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 379999999999999999999999999999888777655 78999999999999999999888 9999999999999987
Q ss_pred cC
Q 012356 380 NS 381 (465)
Q Consensus 380 ~~ 381 (465)
..
T Consensus 175 ~~ 176 (284)
T 3smz_A 175 GQ 176 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.17 E-value=6.7e-11 Score=113.69 Aligned_cols=76 Identities=18% Similarity=0.369 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
...++|||+|||+++|+++|+++|+.||.|..|.|. +.+|||||+|.+.++|.+||..+ +..|+|+.|+|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 456899999999999999999999999999997663 34699999999999999999987 999999999999887
Q ss_pred cc
Q 012356 379 AN 380 (465)
Q Consensus 379 ~~ 380 (465)
+.
T Consensus 95 ~~ 96 (261)
T 3sde_A 95 HG 96 (261)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 204
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.17 E-value=9.9e-12 Score=111.48 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=67.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeec
Q 012356 299 EAEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAK 377 (465)
Q Consensus 299 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~ 377 (465)
..+.++|||+|||+++|+++|+++|.+||.+..+.|.......++|||||+|.+.++|++||+ + +..|+|+.|+|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 345799999999999999999999999987654222111222678999999999999999996 6 99999999999998
Q ss_pred cccC
Q 012356 378 RANS 381 (465)
Q Consensus 378 r~~~ 381 (465)
.++.
T Consensus 89 ~~~~ 92 (175)
T 1fje_B 89 KGRD 92 (175)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.5e-10 Score=91.72 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=62.8
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEE
Q 012356 302 GCSIYVRNLA-------FTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADV 374 (465)
Q Consensus 302 ~~~lfV~nLp-------~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~V 374 (465)
..+|-|.... .++++++|+++|++||.|..|.|. ++++|||||+|.+.++|++||+.+ ..+.++.|+|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V 84 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKI 84 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEE
Confidence 4677776543 458999999999999999997765 256899999999999999999985 4467999999
Q ss_pred eeccccCC
Q 012356 375 EAKRANSR 382 (465)
Q Consensus 375 e~~r~~~r 382 (465)
++++++..
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 206
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.14 E-value=1.1e-10 Score=109.79 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccC-CeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccc-ccceEEeec
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIG-DRPADVEAK 377 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~-g~~i~Ve~~ 377 (465)
..++|||+|||.++++++|+++|++|| .|..+.|.. +.++||||+|.+.++|.+||+.+ +..|+ |+.|+|.++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ----KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS----SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE----CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 359999999999999999999999999 999866532 23689999999999999999988 99999 999999998
Q ss_pred ccc
Q 012356 378 RAN 380 (465)
Q Consensus 378 r~~ 380 (465)
+++
T Consensus 226 ~~~ 228 (229)
T 2adc_A 226 KST 228 (229)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 207
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.14 E-value=1e-10 Score=104.32 Aligned_cols=74 Identities=20% Similarity=0.372 Sum_probs=63.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIF----G-------PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIG 368 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~ 368 (465)
+.++|||+|||+++|+++|+++|++| | .|..+.+. +.+|||||+|.+.++|++|| .+ +..|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46899999999999999999999999 6 55554332 35799999999999999999 66 99999
Q ss_pred ccceEEeecccc
Q 012356 369 DRPADVEAKRAN 380 (465)
Q Consensus 369 g~~i~Ve~~r~~ 380 (465)
|+.|+|..++..
T Consensus 77 g~~i~v~~~~~~ 88 (172)
T 2g4b_A 77 GQSLKIRRPHDY 88 (172)
T ss_dssp TEECEEECCSSC
T ss_pred CceeeecCCccc
Confidence 999999987654
No 208
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.13 E-value=6e-11 Score=108.69 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccC-CeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccc-ccceEEeec
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIG-DRPADVEAK 377 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~-g~~i~Ve~~ 377 (465)
..++|||+|||.++++++|+++|++|| .|..+.|.. ..+|||||+|.+.++|.+||+.+ +..|+ |+.|+|.++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ----KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS----TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe----CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 359999999999999999999999999 999865532 23689999999999999999988 99999 999999998
Q ss_pred ccc
Q 012356 378 RAN 380 (465)
Q Consensus 378 r~~ 380 (465)
+++
T Consensus 195 ~~~ 197 (198)
T 1qm9_A 195 KST 197 (198)
T ss_dssp CCC
T ss_pred ccc
Confidence 763
No 209
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.12 E-value=1.9e-10 Score=110.51 Aligned_cols=80 Identities=31% Similarity=0.441 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-C-Cccc---ccceEEee
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-P-ILIG---DRPADVEA 376 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~-~~i~---g~~i~Ve~ 376 (465)
.++|||+|||+.+|+++|+++|+.||.|..+.|..+...+++|||||+|.+.++|.+||..+ + ..+. ++.|.|++
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 57999999999999999999999999999999988865588999999999999999999998 4 3443 89999999
Q ss_pred ccccC
Q 012356 377 KRANS 381 (465)
Q Consensus 377 ~r~~~ 381 (465)
+....
T Consensus 176 ~~~~~ 180 (261)
T 3sde_A 176 MEQFD 180 (261)
T ss_dssp CCCEE
T ss_pred ccccC
Confidence 87653
No 210
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.11 E-value=1.3e-10 Score=106.19 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=63.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhcc----C-------CeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIF----G-------PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGD 369 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g 369 (465)
.++|||+|||+++|+++|+++|++| | .|..+.+ . +.+|||||+|.+.++|++|| .+ +..|+|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--N---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--E---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--c---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 5899999999999999999999999 5 4544333 1 45799999999999999999 66 999999
Q ss_pred cceEEeeccccC
Q 012356 370 RPADVEAKRANS 381 (465)
Q Consensus 370 ~~i~Ve~~r~~~ 381 (465)
+.|+|.+++...
T Consensus 78 ~~i~v~~~~~~~ 89 (198)
T 2yh0_A 78 QSLKIRRPHDYQ 89 (198)
T ss_dssp EEEEEECCCCCC
T ss_pred ceEEEeCCCCCC
Confidence 999999887653
No 211
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.11 E-value=9.6e-11 Score=114.09 Aligned_cols=82 Identities=7% Similarity=0.136 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhccC-CeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIFG-PIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
..++|||+|||+++++++|+++|+.|| .|..+.|..+....++|||||+|.+.++|.+||+.+ +..|+|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 468999999999999999999999999 999977766555567899999999999999999988 999999999999988
Q ss_pred ccCC
Q 012356 379 ANSR 382 (465)
Q Consensus 379 ~~~r 382 (465)
+...
T Consensus 196 ~~~~ 199 (292)
T 2ghp_A 196 PLEK 199 (292)
T ss_dssp CC--
T ss_pred CCcc
Confidence 6543
No 212
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.10 E-value=9e-11 Score=108.79 Aligned_cols=68 Identities=10% Similarity=0.070 Sum_probs=59.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCe--eEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccccc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPI--KKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDR 370 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i--~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~ 370 (465)
.++|||+|||+++|+++|+++|++||.| ..++|..+. ...+|||||+|.+.++|.+||..| +..|+|+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 5899999999999999999999999999 675554333 245699999999999999999999 9999876
No 213
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.09 E-value=3.3e-11 Score=99.38 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=60.5
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceE
Q 012356 307 VRNLAFTTTSTELEEAF------------KIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPAD 373 (465)
Q Consensus 307 V~nLp~~~te~~L~~~F------------~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~ 373 (465)
+.||++.+++++|+++| ++||.|..+.|..+...+++|||||+|.+.++|++|++.+ +..|+||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777887777666 9999999988766554478999999999999999999998 9999999999
Q ss_pred Eeec
Q 012356 374 VEAK 377 (465)
Q Consensus 374 Ve~~ 377 (465)
|+++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 214
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.05 E-value=2.4e-10 Score=94.34 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=66.4
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHHhccCCeeEeEEEEccCC---CcceEEEEEeCChHHHHHHHHhC-CCc
Q 012356 301 EGCSIYVRNL--AFTTT--------STELEEAFKIFGPIKKNGVQVRSNK---QGYCFGFVAFETPGSVQSALEAS-PIL 366 (465)
Q Consensus 301 ~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~~~v~~~~~~---~~~gfaFV~F~~~~~a~~Al~~~-~~~ 366 (465)
..+.|.|.|+ +.+.. +++|+++|++||.|.++.|..+..+ +++||+||+|.+.++|.+|++.| +..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3578999998 33333 3689999999999999877666543 46899999999999999999999 999
Q ss_pred ccccceEEeeccc
Q 012356 367 IGDRPADVEAKRA 379 (465)
Q Consensus 367 i~g~~i~Ve~~r~ 379 (465)
|+||.|+|++...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 215
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.00 E-value=1.5e-09 Score=94.74 Aligned_cols=101 Identities=10% Similarity=0.056 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHHhhccCc-----chhcccccCCceeeecCCCCcccchhhHHHHHHHHh-cCCCCcceEEEeeeeee
Q 012356 11 SAQVVGNAFVEQYYHILHQSP-----GLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRIL-SLNYEDYTAEIKTADAQ 84 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~~~p-----~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~-~l~~~~~~~~i~~~d~q 84 (465)
.-.+.+..||+.||..|+..+ ..|..|+...+.++++|. .+-...+..+.+. .++ ..+|+|+++|||
T Consensus 14 ~~~~aae~FVk~~y~aLd~~r~~~l~~~lssF~p~~~~Ii~NG~-----p~a~p~~fqeiw~~Q~p--~T~hel~S~D~H 86 (184)
T 1of5_B 14 NQAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNAT-----PFAQATVFLQMWQNQVV--QTQHALTGVDYH 86 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCC-CHHHHTTBCSS-CCEEETTE-----EESCHHHHHHHHHHHSC--CCEEEEEEEEEE
T ss_pred cchhHHHHHHHHHHHHhcccccchhhhhhhhcCCCCceEEECCe-----EcCCHHHHHHHHHhcCC--CceEEEEeEEEE
Confidence 456789999999999999988 889999877789999987 6666777888777 788 459999999999
Q ss_pred eeCC-CcEEEEEEEEEEcCCCCcccEEEEEEeeec
Q 012356 85 DSYE-KGVIVLVTGCLTGKDNVKKKFTQTFFLAPQ 118 (465)
Q Consensus 85 ~s~~-~~i~v~V~G~~~~~~~~~~~F~q~F~L~~~ 118 (465)
-... +.|+|+|.|.+..++...-+|.|+|+|.+.
T Consensus 87 VIngsgsivv~VsgkVRFdEsgrd~fgEtfvLvpn 121 (184)
T 1of5_B 87 AIPGSGTLICNVNCKVRFDESGRDKMGQDATVPIQ 121 (184)
T ss_dssp EETTTTEEEEEEEEEEECC----------------
T ss_pred EECCCCeEEEEEEEEEEECCCCCCCCCCeEEECCC
Confidence 9863 579999999999976554699999999975
No 216
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.99 E-value=8.3e-10 Score=92.96 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCC--C---CCHHHHHHHHhccCCeeEeEEEEccCC-----CcceEEEEEeCChHHHHHHHHhC-CCcccc
Q 012356 301 EGCSIYVRNLAF--T---TTSTELEEAFKIFGPIKKNGVQVRSNK-----QGYCFGFVAFETPGSVQSALEAS-PILIGD 369 (465)
Q Consensus 301 ~~~~lfV~nLp~--~---~te~~L~~~F~~~G~i~~~~v~~~~~~-----~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g 369 (465)
..+.|+|+|+-. + --+++|+++|++||.|.+|.|..+... +++||+||+|.+.++|.+|++.| +..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468999999832 2 236899999999999999988877542 46799999999999999999999 999999
Q ss_pred cceEEeeccc
Q 012356 370 RPADVEAKRA 379 (465)
Q Consensus 370 ~~i~Ve~~r~ 379 (465)
|.|+|++...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998764
No 217
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.91 E-value=2.3e-09 Score=106.42 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=61.1
Q ss_pred CCCCEEEEcC--CCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccc---cc--c
Q 012356 300 AEGCSIYVRN--LAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIG---DR--P 371 (465)
Q Consensus 300 ~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~---g~--~ 371 (465)
....+|||+| |++.+|+++|+++|++||.|..+. +.. +||||||+|.+.++|++||+.| +..+. |+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~--~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL--MPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEE--CCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEE--EeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 3468999999 578999999999999999998843 333 5799999999999999999999 88772 44 4
Q ss_pred eEEeecc
Q 012356 372 ADVEAKR 378 (465)
Q Consensus 372 i~Ve~~r 378 (465)
|+|.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 6776663
No 218
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=6.9e-09 Score=87.19 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=65.6
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCC-hHHHHHHHHhC---CCcccccce
Q 012356 298 EEAEGCSIYVRNLAFT-TTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFET-PGSVQSALEAS---PILIGDRPA 372 (465)
Q Consensus 298 ~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~-~~~a~~Al~~~---~~~i~g~~i 372 (465)
....++.|||+||+++ ++.++|+++|++||.|..|++..+. ..|||.|.+ ..+|..|++.+ +++|+|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 4567899999999999 9999999999999999997765433 369999999 78999999987 788999999
Q ss_pred EEeecc
Q 012356 373 DVEAKR 378 (465)
Q Consensus 373 ~Ve~~r 378 (465)
+++.-.
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 987554
No 219
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.72 E-value=1.4e-08 Score=84.85 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=61.1
Q ss_pred CCEEEEcCCCCCC----------CHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccccc
Q 012356 302 GCSIYVRNLAFTT----------TSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDR 370 (465)
Q Consensus 302 ~~~lfV~nLp~~~----------te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~ 370 (465)
.+.|.+.|+=... -+++|+++|++||.|.++.| .++ ..+||+||+|.+.++|++|++.| |..|+||
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i--~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYV--DKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEE--CTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEE--ecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4678888873221 13578999999999998655 333 25899999999999999999999 9999999
Q ss_pred ceEEeeccc
Q 012356 371 PADVEAKRA 379 (465)
Q Consensus 371 ~i~Ve~~r~ 379 (465)
.|+|++...
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999998864
No 220
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=3.3e-08 Score=78.08 Aligned_cols=73 Identities=18% Similarity=0.147 Sum_probs=58.5
Q ss_pred CCCEEEEcCCCC----CCCH----HHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccce
Q 012356 301 EGCSIYVRNLAF----TTTS----TELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPA 372 (465)
Q Consensus 301 ~~~~lfV~nLp~----~~te----~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i 372 (465)
...+|+|..++. +.-. .+|.+.|.+||.|..++|..+ .+||+|.+.++|.+||+..+..|+||.|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 357888887662 2333 679999999999998666432 2899999999999999933999999999
Q ss_pred EEeecccc
Q 012356 373 DVEAKRAN 380 (465)
Q Consensus 373 ~Ve~~r~~ 380 (465)
+|.++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99999864
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=2.6e-07 Score=73.37 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=58.0
Q ss_pred CCCEEEEcCCCCC------CCH---HHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCccccc
Q 012356 301 EGCSIYVRNLAFT------TTS---TELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDR 370 (465)
Q Consensus 301 ~~~~lfV~nLp~~------~te---~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~ 370 (465)
...+|+|..++.. ..+ .+|.+.|.+||.|..++|..++ +||+|.+.++|.+||+ + +..|+||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 4578999887642 221 5689999999999987665433 8999999999999999 6 9999999
Q ss_pred ceEEeeccc
Q 012356 371 PADVEAKRA 379 (465)
Q Consensus 371 ~i~Ve~~r~ 379 (465)
.|+|.++.+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999998764
No 222
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.25 E-value=1.7e-06 Score=80.61 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=57.7
Q ss_pred CHHHHHHHHhccCCeeEeEEEEccCC-----CcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeeccc
Q 012356 315 TSTELEEAFKIFGPIKKNGVQVRSNK-----QGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKRA 379 (465)
Q Consensus 315 te~~L~~~F~~~G~i~~~~v~~~~~~-----~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r~ 379 (465)
.+++|++.|++||.|..+.|..+... +++||+||+|.+.++|++|++.| |..++||.|.|++...
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 56889999999999999888755443 67899999999999999999999 9999999999998753
No 223
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.0001 Score=59.69 Aligned_cols=70 Identities=10% Similarity=-0.021 Sum_probs=59.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHhcc-----CCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEE
Q 012356 301 EGCSIYVRNLAFTTTSTELEEAFKIF-----GPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADV 374 (465)
Q Consensus 301 ~~~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~V 374 (465)
..++|-+-|||..+++..|+.++..+ |.|+. |.+..+- +=|+|+|.|...|-+|.-.+ |.+|.||+|++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~K--I~L~pDH---~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRK--ILLVSDF---NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSE--EEEETTT---TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeE--EEEecCC---CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 35888888999999999999999999 99988 4444433 33999999999888887666 99999999998
Q ss_pred e
Q 012356 375 E 375 (465)
Q Consensus 375 e 375 (465)
-
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 5
No 224
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.0015 Score=52.46 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=60.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhc-----cCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccccceEEee
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKI-----FGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGDRPADVEA 376 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~-----~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g~~i~Ve~ 376 (465)
+.+|.|.|||..+.++.|+-+|+. -|.|.. |.... +-|+|+|.+.+.+++.|+.-.+.|++..|.|..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~--v~~~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS--WQRLG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE--EEEET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE--EEEcC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 589999999999999999999986 256666 43332 459999999999999998878999999999987
Q ss_pred cccc
Q 012356 377 KRAN 380 (465)
Q Consensus 377 ~r~~ 380 (465)
..++
T Consensus 81 ~~~~ 84 (104)
T 2dhx_A 81 APPR 84 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6554
No 225
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=97.09 E-value=0.004 Score=53.39 Aligned_cols=106 Identities=8% Similarity=0.082 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCcE
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL---NYEDYTAEIKTADAQDSYEKGV 91 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~~~d~q~s~~~~i 91 (465)
=..++..||..|+ .+.+.|..+|.++..+...|. ...|.++|.+.+..+ .+.+..+.+..++.....++..
T Consensus 21 i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~A 95 (143)
T 4i4k_A 21 VAALPARIVAAWADHDADRFADVFAEDGTMILPGL-----FRKGRENIRTHMAAAFAGPYKGTRVIGSPIDARLLGDGIA 95 (143)
T ss_dssp HHTHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhcCceEEeCCC-----eecCHHHHHHHHHHHHhhcCCCCeEEeeeEEEEEcCCCEE
Confidence 4678899999988 789999999999988875443 578999999988542 3345555555555554444545
Q ss_pred EEEEEEEEEcCCCC----cccEEEEEEeeecCCCcEEEEc
Q 012356 92 IVLVTGCLTGKDNV----KKKFTQTFFLAPQDKGGYFVLN 127 (465)
Q Consensus 92 ~v~V~G~~~~~~~~----~~~F~q~F~L~~~~~~~y~v~n 127 (465)
++...+.+...+.. .+.+.+|++|...+. +|.|..
T Consensus 96 ~v~~~~~~~~~g~~~~~~~~~~~~T~v~~r~~g-~WrI~~ 134 (143)
T 4i4k_A 96 LLITEGGILAPGETEASGDGAVRASWLAVEQDG-QWRLAA 134 (143)
T ss_dssp EEEEEEEEECTTCSSCCGGGEEEEEEEEEEETT-EEEEEE
T ss_pred EEEeccceecCCCCCCCcccceEEEEEEEEECC-cEEEEE
Confidence 55555666554432 366899999998887 899876
No 226
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=96.61 E-value=0.028 Score=48.31 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=76.8
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceee-ecCCCCcccchhhHHHHHHHHhc---CCCCcceEEEeeeeeeeeCCCcE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLS-RPDSNGSMTTVTTMKAINDRILS---LNYEDYTAEIKTADAQDSYEKGV 91 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~-~~~~~~~~~~~~g~~~I~~~~~~---l~~~~~~~~i~~~d~q~s~~~~i 91 (465)
..++..|...++ .+.+.|..+|.++..+. ..|. ...|.++|.+.+.. -.+....+.+...+.....++..
T Consensus 9 ~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~~~~G~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~A 83 (146)
T 3gzr_A 9 QALIQAYFTAWNTNAPERFAEIFWPDGSWVNVVGM-----HWRGRDQIVFAHTAFLKTIFKDCKQELVTIEARTIAPGSA 83 (146)
T ss_dssp HHHHHHHHHHHHTTCGGGSGGGEEEEEEEECTTCC-----EEESHHHHHHHHHHHHHTTTTTCCEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHcCCHHHHHhhccCCeEEEcCCCC-----eeeCHHHHHHHHHHHhhcccCCCEEEEeEEEEEEcCCCEE
Confidence 577888999988 78999999999998776 4443 57899999998753 23444445544444444334545
Q ss_pred EEEEEEEEE---cCCCCc---ccEEEEEEeeecCCCcEEEEcceEeeeccc
Q 012356 92 IVLVTGCLT---GKDNVK---KKFTQTFFLAPQDKGGYFVLNDVFRFVEEN 136 (465)
Q Consensus 92 ~v~V~G~~~---~~~~~~---~~F~q~F~L~~~~~~~y~v~nDifr~~~~~ 136 (465)
++.+...|. ..+... ..+.++++|..++. +|.|..+--..++..
T Consensus 84 ~v~~~~~l~g~~~~~G~~~~~~~~~~t~v~vr~dg-~WrI~a~h~s~v~p~ 133 (146)
T 3gzr_A 84 LAVVTLIQDAYVTPDGRQMPRAHDRLTLLAVEREG-VWRFIHGHNTIVNPD 133 (146)
T ss_dssp EEEEEEEECCEECTTCCEECCEEEEEEEEEEEETT-EEEEEEEEEEECCTT
T ss_pred EEEEEEEecceeCCCCCcCCccCcEEEEEEEEECC-EEEEEEEecccCcCC
Confidence 555554443 122222 46789999998876 999998776655433
No 227
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=96.42 E-value=0.016 Score=51.04 Aligned_cols=113 Identities=10% Similarity=-0.020 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeee-cCCCCcccchhhHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCC
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSR-PDSNGSMTTVTTMKAINDRILSL---NYEDYTAEIKTADAQDSYEK 89 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~-~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~~~d~q~s~~~ 89 (465)
-=..++..|+..++ .+.+.|..+|.++..+.. .+. ...|.++|.+.+..+ .+....+.+...+.....++
T Consensus 17 aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~~~~g~-----~~~Gr~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 91 (172)
T 3cu3_A 17 AIRAFHRQMIDAWNRGSGEGFAAPFSETADFITFEGT-----HLKGRKEIAAFHQQAFDTVVKGTRLEGEVDFVRFVNSQ 91 (172)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCC-----EEEHHHHHHHHHHHHHHTTTTTCEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEEeCCCC-----eEECHHHHHHHHHHHhhccCCCcEEEEEEeEEEEeCCC
Confidence 44678899999988 789999999999988764 343 688999999987653 24344444433333333334
Q ss_pred cEEEEEEEEEEcCCC----CcccEEEEEEeeecCCCcEEEEcceEeee
Q 012356 90 GVIVLVTGCLTGKDN----VKKKFTQTFFLAPQDKGGYFVLNDVFRFV 133 (465)
Q Consensus 90 ~i~v~V~G~~~~~~~----~~~~F~q~F~L~~~~~~~y~v~nDifr~~ 133 (465)
..++.+.+.+...+. +...+..+++|...+. +|.|...-...+
T Consensus 92 ~A~v~~~~~~~~~g~~~~~~~~~~~~t~v~~r~dG-~WrI~~~~~s~~ 138 (172)
T 3cu3_A 92 LALMLVVIRVILPGQTETSASRDSLPLYVVTKGDE-GWQIEGLLNTRK 138 (172)
T ss_dssp EEEEEEEEEEECTTCSSBCGGGCBCCEEEEEEETT-EEEEEEEECCBC
T ss_pred EEEEEEEEEEEeCCCCCcCCccceEEEEEEEEeCC-eEEEEEEEcCcc
Confidence 455555555665443 2345667777777765 899988655443
No 228
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.42 E-value=0.012 Score=46.69 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=44.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS 363 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~ 363 (465)
.+-++| ++|.++...||.++|+.||.|. |....++ .|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~WidDT----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDDT----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEEEETT----EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE---EEEEcCC----eEEEEecCHHHHHHHHHhc
Confidence 366667 9999999999999999999665 4444443 6999999999999998854
No 229
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=96.35 E-value=0.038 Score=45.28 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC-CCcceEEEeeeeeeeeCCC
Q 012356 12 AQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN-YEDYTAEIKTADAQDSYEK 89 (465)
Q Consensus 12 ~~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~-~~~~~~~i~~~d~q~s~~~ 89 (465)
.++.=...+..|+..|+ .+.+.|..+|.++..+...+. ..+.|.++|.+.+..+- .....+.+..+..... ++
T Consensus 4 ~~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~v~~~-gd 78 (129)
T 3hx8_A 4 AKEAIEAANADFVKAYNSKDAAGVASKYMDDAAAFPPDM----ARVDGRQNIQKLWQGAMDMGISELKLTTLDVQES-GD 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHTTCEEEEEEEEEEEEE-TT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEEeCCCC----CcccCHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CC
Confidence 44555778899999998 788999999999988854432 14789999999876431 1113455555555533 33
Q ss_pred cEEEEEEEEEEc--CCCCcc--cEEEEEEeeecCCCcEEEEcceEe
Q 012356 90 GVIVLVTGCLTG--KDNVKK--KFTQTFFLAPQDKGGYFVLNDVFR 131 (465)
Q Consensus 90 ~i~v~V~G~~~~--~~~~~~--~F~q~F~L~~~~~~~y~v~nDifr 131 (465)
.+++...-.++. .+.... ...-+.++..+.+|+|.|..|.|-
T Consensus 79 ~A~~~~~~~~~~~~~~G~~~~~~g~~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 79 FAFESGSFSLKAPGKDSKLVDAAGKYVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEEEEEEeeCCCCCeeeeeEEEEEEEEECCCCcEEEEEeecc
Confidence 333332222222 222222 223344455563459999999874
No 230
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.08 E-value=0.012 Score=47.32 Aligned_cols=74 Identities=8% Similarity=-0.011 Sum_probs=58.7
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEe
Q 012356 302 GCSIYVRNLAFTT-T----STELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVE 375 (465)
Q Consensus 302 ~~~lfV~nLp~~~-t----e~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve 375 (465)
.++|+|.||+.++ . .+.++++|..|+++...... + +-.-..|.|.+.++|.+|-..+ +..|+|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l--k---SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF--K---SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE--T---TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec--C---cceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 3789999998765 2 25679999999998874332 2 1223689999999999999999 999999999999
Q ss_pred ecccc
Q 012356 376 AKRAN 380 (465)
Q Consensus 376 ~~r~~ 380 (465)
+..+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 88743
No 231
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=95.90 E-value=0.046 Score=45.21 Aligned_cols=115 Identities=19% Similarity=0.189 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CC-cceEEEeeeeeeeeCC
Q 012356 13 QVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YE-DYTAEIKTADAQDSYE 88 (465)
Q Consensus 13 ~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~-~~~~~i~~~d~q~s~~ 88 (465)
.+--..++..||..|+ .+.+.|..+|.++.++...+. ....|.++|.+.+..+- +. ...+.|..+... .+
T Consensus 10 ~~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~~~~~----~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~i~~~--~g 83 (135)
T 3d9r_A 10 LAVIEAAAIAYLTAFNRADIPAVIATYTDDGVLMGPGR----PAAVGKDELAEVYLSVFETVGFDMAYEIKEVVQT--SA 83 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS----CCEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEE--ET
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC----CcccCHHHHHHHHHHHHhhcCCceeEEEEEEEEe--cC
Confidence 3445678999999998 678999999999988765443 13569999999887542 21 233444444321 23
Q ss_pred CcEEEEEE--EEEEcC-CCCc--ccEEEEEEeeecCCCcEEEEcceEeee
Q 012356 89 KGVIVLVT--GCLTGK-DNVK--KKFTQTFFLAPQDKGGYFVLNDVFRFV 133 (465)
Q Consensus 89 ~~i~v~V~--G~~~~~-~~~~--~~F~q~F~L~~~~~~~y~v~nDifr~~ 133 (465)
+.+++... +.++.. +... ..+.-+++|..+.+|+|.|..|+|..+
T Consensus 84 d~a~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 84 DWAFVRSATEGTETNKATGVVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp TEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred CEEEEEEEEEEEEecCCCCCceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 33333322 333322 2222 224456677666345999999999765
No 232
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.62 E-value=0.045 Score=43.06 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=50.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC---CcceEEEEEeCChHHHHHHHHhC-CCcc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK---QGYCFGFVAFETPGSVQSALEAS-PILI 367 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~---~~~gfaFV~F~~~~~a~~Al~~~-~~~i 367 (465)
++|.|++||...|++++.+.+.....+......--+.. ....-|||.|.+.+++..-.+.. ++.|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 58999999999999999999998877655333222222 23467999999999999988888 7766
No 233
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.58 E-value=0.016 Score=46.02 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=43.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS 363 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~ 363 (465)
+-++| ++|.++...||.++|+.||.|. |....++ .|||.|.+++.|..||..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---I~WidDT----sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDDT----SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---EEEEETT----EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---EEEEcCC----eEEEEecCHHHHHHHHHhc
Confidence 45566 9999999999999999999543 5554554 6999999999999999854
No 234
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=95.29 E-value=0.12 Score=43.62 Aligned_cols=107 Identities=11% Similarity=0.228 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeee-cCCCCcccchhhHHHHHHHHhcCC--C-CcceEEEeeeeeeeeCCCcE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSR-PDSNGSMTTVTTMKAINDRILSLN--Y-EDYTAEIKTADAQDSYEKGV 91 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~-~~~~~~~~~~~g~~~I~~~~~~l~--~-~~~~~~i~~~d~q~s~~~~i 91 (465)
...+..||..|+ .+.+.|..+|.++..+.. .+. ...|.++|.+.+..+- | ....+.+..+...... +..
T Consensus 6 ~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~~~~g~-----~~~G~~aI~~~~~~~~~~~~~~~~~~~~~~~v~~~g-d~A 79 (142)
T 2gxf_A 6 KDIISACDLAIQNEDFDTLMNYYSEDAVLVVKPGM-----IARGKEEIKKAFITIANYFNHHIVPTQGKMILLEAG-DTV 79 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHTTSEEEEEEEECSSSC-----EEEHHHHHHHHHHHTTSCCCSSCCCEEEEEEEEEET-TEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCEEEEcCCCC-----cccCHHHHHHHHHHHHHhhCCCceEEEEEEEEEEcC-CEE
Confidence 466888999998 689999999999988754 332 5889999999887532 1 2234455555555443 334
Q ss_pred EEEEEEEEEc-CCCCc--ccEEEEEEeeecCCCcEEEEcce
Q 012356 92 IVLVTGCLTG-KDNVK--KKFTQTFFLAPQDKGGYFVLNDV 129 (465)
Q Consensus 92 ~v~V~G~~~~-~~~~~--~~F~q~F~L~~~~~~~y~v~nDi 129 (465)
++.+...+.. .+... ....-+++|..+.+|+|.|..|.
T Consensus 80 ~~~~~~~~~~~~~G~~~~~~g~~t~v~~r~~dG~Wri~~d~ 120 (142)
T 2gxf_A 80 LVLSQTLLDSDKKDSEYAMERRATYVFKKNAQGEWLCVIDN 120 (142)
T ss_dssp EEEEEEECCC---------EEEEEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEEEEECCCCCeEeeeEEEEEEEEECCCCCEEEEEEC
Confidence 4444433432 11111 22233667766555579887664
No 235
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=95.29 E-value=0.05 Score=46.34 Aligned_cols=110 Identities=5% Similarity=0.000 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--C-CcceEEEeeeeeeee
Q 012356 11 SAQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--Y-EDYTAEIKTADAQDS 86 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~-~~~~~~i~~~d~q~s 86 (465)
+-++.-+..+..|+.-++ .+.+.|..||.++.++...+. ...|+++|...+...- + ....++|. +++.+
T Consensus 14 ~de~aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~~~g~-----~~~Gr~ai~a~~~~~~~~~~~~~~~~~~--~i~v~ 86 (139)
T 3rob_A 14 ADELAIRTVQYRWLEATRKFDRQVLSSLMTDDVVFLTPGR-----LPFGKEEFLAACEQNDQRVIIEASATFE--EIVIV 86 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEECTTS-----CCBCHHHHHHHHHHHHHHEEEEEEEEEE--EEEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHccCcEEEECCCC-----CccCHHHHHHHHHHHHHhcCCCCceEEE--EEEEc
Confidence 345677889999999888 899999999999998776553 2349999998764321 0 11223333 33333
Q ss_pred CCCcEEEEEEEE----EEcC-CCCcc--cEEEEEEeeecCCCcEEEEcceE
Q 012356 87 YEKGVIVLVTGC----LTGK-DNVKK--KFTQTFFLAPQDKGGYFVLNDVF 130 (465)
Q Consensus 87 ~~~~i~v~V~G~----~~~~-~~~~~--~F~q~F~L~~~~~~~y~v~nDif 130 (465)
.+ +-++.|. ++.. +.... ...-+++|.++.+|.|.|..|+-
T Consensus 87 GD---~A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~ 134 (139)
T 3rob_A 87 EP---MAYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDAN 134 (139)
T ss_dssp TT---EEEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred CC---eEEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhh
Confidence 22 2222332 2322 33333 33356678786777899999875
No 236
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=95.04 E-value=0.5 Score=40.38 Aligned_cols=116 Identities=14% Similarity=0.136 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeeeeeeeeC
Q 012356 11 SAQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSY 87 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d~q~s~ 87 (465)
.-++--..++.+|+..|+ .+.+.|..+|.++.++..... + ....|.++|.+.+..+- +....+.+..+.. ..
T Consensus 17 ~d~~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~~~~~-~--~~~~G~~~i~~~~~~~~~~~~~~~i~~~~i~~--~~ 91 (156)
T 3h51_A 17 GEAREVAALFDTWNAALATGNPHKVADLYAPDGVLLPTVS-N--EVRASREQIENYFEMFLTKKPKGVINYRTVRL--LD 91 (156)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEECSSC-S--SCBCSHHHHHHHHHHHGGGCCEEEEEEEEEEE--CS
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCC-C--ccccCHHHHHHHHHHHHhhCCCCcccceEEEE--ec
Confidence 344445677788888887 889999999999887653111 1 14689999998876531 1122333333332 21
Q ss_pred CCcEEEEEEEEE--Ec--CCCC--cccEEEEEEeeecCCCcEEEEcceEeeec
Q 012356 88 EKGVIVLVTGCL--TG--KDNV--KKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (465)
Q Consensus 88 ~~~i~v~V~G~~--~~--~~~~--~~~F~q~F~L~~~~~~~y~v~nDifr~~~ 134 (465)
++.. ++.|.+ .. .+.. ......|+++..++. +|.|..+-+..+.
T Consensus 92 gd~A--~~~~~~~~~~~~~~G~~~~~~~r~t~v~~r~dG-~WkIv~~H~S~~p 141 (156)
T 3h51_A 92 DDSA--VDAGVYTFTLTDKNGKKSDVQARYTFVYEKRDG-KWLIINHHSSAMP 141 (156)
T ss_dssp SSEE--EEEEEEEEEEECTTSCEEEEEEEEEEEEEEETT-EEEEEEEEEEECS
T ss_pred CCeE--EEEEEEEEEEEcCCCCeEEEEeEEEEEEEEECC-EEEEEEEeecCCC
Confidence 2322 334443 22 2222 223355666666655 9999987776553
No 237
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=94.96 E-value=0.37 Score=39.42 Aligned_cols=104 Identities=7% Similarity=-0.047 Sum_probs=61.6
Q ss_pred HHHHHHHHhhc-cCcchhcccc--cCCceeeecCCCCcccchhhHHHHHHHHhcC---CCCcceEEEeeeeeeeeCCCcE
Q 012356 18 AFVEQYYHILH-QSPGLVHRFY--QDSSLLSRPDSNGSMTTVTTMKAINDRILSL---NYEDYTAEIKTADAQDSYEKGV 91 (465)
Q Consensus 18 ~Fv~~YY~~l~-~~p~~l~~fY--~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~~~d~q~s~~~~i 91 (465)
..++.||.-++ .+.+.|..+| .+...+...+. ...|.++|.+.+..+ ++....+.+.-++.+...++..
T Consensus 9 ~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~~~~~-----~~~G~~~i~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~a 83 (122)
T 3b7c_A 9 QLLKGQEEAWNRGDLDAYMQGYWQNEQLMLISNGK-----FRNGWDETLAAYKKNYPDKESLGELKFTIKEIKMLSNYAA 83 (122)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTBCCSTTCEEECSSC-----EEECHHHHHHHHHHHCSSGGGSCEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhhcCCCCEEEECCCc-----cccCHHHHHHHHHHhcCChhhcCeeEEEEEEEEEcCCCEE
Confidence 35556666665 8899999999 55555544332 578999999976642 1222455655566665433323
Q ss_pred EEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcc
Q 012356 92 IVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLND 128 (465)
Q Consensus 92 ~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nD 128 (465)
+|.....+....... ...-|++|..++. +|.|..+
T Consensus 84 ~v~~~~~~~~~~~~~-~~r~T~v~~k~~g-~W~Iv~~ 118 (122)
T 3b7c_A 84 MVVGRWDLKRLKDTP-TGVFTLLVEKIDD-RWVITMD 118 (122)
T ss_dssp EEEEEEEEECSSCCC-EEEEEEEEEEETT-EEEEEEE
T ss_pred EEEEEEEEEccCCCC-CcEEEEEEEEeCC-CEEEEEE
Confidence 332233344332222 2356888888876 8999875
No 238
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.94 E-value=0.065 Score=44.20 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCcccc-cceEEeec
Q 012356 300 AEGCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPILIGD-RPADVEAK 377 (465)
Q Consensus 300 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~i~g-~~i~Ve~~ 377 (465)
.+.+-|.|-+.|.. ....|.+.|++||.|.+... . ....+-.|.|.+..+|++||.+.+..|++ ..|-|...
T Consensus 22 ~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~--~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVM--S---NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEE--C---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEecc--C---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 34688888899887 46778999999999987433 2 23467899999999999999999988875 55666553
No 239
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=94.64 E-value=0.34 Score=41.27 Aligned_cols=110 Identities=13% Similarity=0.155 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHHhhc-cCcchhcccccCCc--eeeecCCCCcccchhhHHHHHHHHhcCCCCcc-eEEEeeeeeeee
Q 012356 11 SAQVVGNAFVEQYYHILH-QSPGLVHRFYQDSS--LLSRPDSNGSMTTVTTMKAINDRILSLNYEDY-TAEIKTADAQDS 86 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s--~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~-~~~i~~~d~q~s 86 (465)
+++++=.. ||.-|+ .+.+.|..+|.++. ++...+. . ...|.++|.+.+..+ |... .+.|...+.+-.
T Consensus 9 ~~~~~~~a----f~~A~~~gD~da~~al~a~d~~v~~v~p~g--~--~l~G~~ai~~~w~~~-f~~~~~~~i~~~~v~v~ 79 (144)
T 3gwr_A 9 TPEAAEDA----FYAAFEARSLDDMMAVWARDDHVACIHPLA--A--PLNGRAAVAAGWRSM-FGAAGRFRLQVKAVHEI 79 (144)
T ss_dssp SHHHHHHH----HHHHHHHTCHHHHHHHBCSSSCCEEECTTC--C--CEESHHHHHHHHHHH-HHHHCCEEEEEEEEEEE
T ss_pred CHHHHHHH----HHHHHHcCCHHHHHhhccCCCCEEEECCCC--C--CcccHHHHHHHHHHH-HcCCCcEEEEEEEEEEE
Confidence 56665444 566665 89999999999874 3344432 1 478999999887542 1111 344444444333
Q ss_pred C-CCcEEEEEEEEEEcCC--CCcccEEEEEEeeecCCCcEEEEcceE
Q 012356 87 Y-EKGVIVLVTGCLTGKD--NVKKKFTQTFFLAPQDKGGYFVLNDVF 130 (465)
Q Consensus 87 ~-~~~i~v~V~G~~~~~~--~~~~~F~q~F~L~~~~~~~y~v~nDif 130 (465)
. ++..++.+...+.... .....+.-|+++..++. +|.|...=-
T Consensus 80 ~~gd~A~v~~~e~~~~~~~~g~~~~~r~T~V~~r~~g-~WrivhhH~ 125 (144)
T 3gwr_A 80 RQADHVIRIVDEFLTIGDETAPRPAILATNVYRREAD-GWRMVLHHA 125 (144)
T ss_dssp ECSSEEEEEEEEEEEETTCSSCCCCEEEEEEEEECSS-SEEEEEEEE
T ss_pred ecCCEEEEEEEEEEEecCCCCceeeEEEEEEEEEECC-EEEEEEEec
Confidence 2 2335555556666532 22255777777777776 898877443
No 240
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.24 E-value=0.028 Score=57.56 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=43.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCC
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASP 364 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~ 364 (465)
.++|||. ++..+++.+|.++|++||.|.. +..++++ ..|+.|+|.+.+++++++....
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~--~~~~~~~--g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINN--HFFYESF--GLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCC--EEEECSS--SEEEEEECC---CCHHHHSSCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcce--EEEEccC--CeEEEEEeCCHHHHHHHHhccC
Confidence 5899997 7999999999999999999998 5555433 4799999999999998876543
No 241
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=93.09 E-value=1.2 Score=36.73 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhc-CCCCcceEEEeeeeeeeeCCCcEEEE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILS-LNYEDYTAEIKTADAQDSYEKGVIVL 94 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~-l~~~~~~~~i~~~d~q~s~~~~i~v~ 94 (465)
.+-|..|+.-|+ .+.+.|.+.|+++..|.... +|........++..+.+.+ -+.....++|.+|+... +.-.+.
T Consensus 15 ~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~-~G~~l~~~~~~e~~~~v~~~~p~~~~~~~I~~I~i~g---d~A~a~ 90 (125)
T 3duk_A 15 TEVLNVYMNAAESGTGEEMSAAFHKDATIFGYV-GDKLAFNGPIKDLYDWHNSNGPAKNVQSRITNIDIVG---TVAHAR 90 (125)
T ss_dssp HHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEE-TTEEEEEEETHHHHHHHHHHCCCTTCEEEEEEEEEET---TEEEEE
T ss_pred HHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEc-CCCEEeeCCHHHHHHHHhccCCCCcccceEEEEEEEC---CEEEEE
Confidence 455788988888 88999999999999885433 2331111234454444432 34446778888877753 433333
Q ss_pred EEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEee
Q 012356 95 VTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132 (465)
Q Consensus 95 V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~ 132 (465)
|.- . .-....|+-.|.|.+.+. +|-|.|=+|++
T Consensus 91 v~~--~--~~~~~~f~D~l~L~k~dg-~WkIv~K~~~~ 123 (125)
T 3duk_A 91 VEA--E--NWTNFKFSDLFLLLKLDG-KWTIVNKVFHL 123 (125)
T ss_dssp EEE--E--CSSSCCEEEEEEEEEETT-EEEEEEEEEEE
T ss_pred EEE--E--EcCCCeEEEEEEEEEeCC-EEEEEEEEEEe
Confidence 321 1 112368999999999887 99999999875
No 242
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=92.69 E-value=1.4 Score=36.60 Aligned_cols=112 Identities=12% Similarity=0.011 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC-C--CCcceEEEeeeeeeeeCCCcE
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL-N--YEDYTAEIKTADAQDSYEKGV 91 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l-~--~~~~~~~i~~~d~q~s~~~~i 91 (465)
-..++..||.-++ .+.+.|..+|.++.++...+..|. ...|.++|...+..+ . ....++.|..+..+...+..+
T Consensus 15 I~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~~~~~~g~--~~~G~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~gd~aa 92 (143)
T 2ux0_A 15 IIKITEQLIEAINNGDFEAYTKICDPGLTSFEPEALGN--LVEGMDFHKFYFENLLSKNSKPIHTTILNPHVHVIGEDAA 92 (143)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTC--EEEHHHHHHHHHHHTTTTCCSCEEEEEEEEEEEECSTTEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCcEEEeccCCCc--EEEcHHHHHHHHHhhhhcCCCceeEEEeCCEEEEecCcEE
Confidence 3466677777776 899999999999876654322121 568999999887654 2 223455666665665544433
Q ss_pred EEEEEEEEE--cC-CCC--cccEEEEEEeeecCCCcEEEEcceEe
Q 012356 92 IVLVTGCLT--GK-DNV--KKKFTQTFFLAPQDKGGYFVLNDVFR 131 (465)
Q Consensus 92 ~v~V~G~~~--~~-~~~--~~~F~q~F~L~~~~~~~y~v~nDifr 131 (465)
++ ....+. .. +.. ...+.-|+++...+. +|.|..+=..
T Consensus 93 v~-~~~~~~~~~~~~g~~~~~~~r~T~v~~k~~g-~Wkivh~H~S 135 (143)
T 2ux0_A 93 CI-AYIRLTQYIDGQGRPRTSQSEETRVWHRRDG-KWLNVHYHCS 135 (143)
T ss_dssp EE-EEEEEEEEECTTSCEEEEEEEEEEEEEEETT-EEEEEEEEEE
T ss_pred EE-EEeEeeeeecCCCCeeeeeEEEEEEEEEECC-EEEEEEEeeC
Confidence 32 222222 12 122 234556667777665 8999876443
No 243
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=92.67 E-value=0.25 Score=44.10 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhccCcchhcccccCCceeeecCC-CCcccchhhHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCC-cE
Q 012356 16 GNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDS-NGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEK-GV 91 (465)
Q Consensus 16 g~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~-~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d~q~s~~~-~i 91 (465)
-+.=|++|+.++.++++.+..||.++.++.+... .|......|+++|.+.+..+. |.+ ..+..+....+-++ -|
T Consensus 43 nr~vV~~yl~~~~~D~~~~~eLfAeDav~e~P~~~~G~P~r~~GReai~~~~~~~~~~~~d--~~~~~~~v~~taDpd~V 120 (185)
T 3jum_A 43 NRKIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIAIRGREKLGEHAVWSLQCFPD--WVWTDIQIFETQDPNWF 120 (185)
T ss_dssp HHHHHHHHHHCCGGGGGGGGGGEEEEEEEEESCCTTSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEECCSSTTEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhCCCCEEEEecCCCCCCCccccCHHHHHHHHHHHHhhCCC--CeeeEEEEEEecCCCEE
Confidence 4567999999999999999999999998877432 344556889999999975432 223 45555666555443 36
Q ss_pred EEEEEEEEE--cCCCC----cccEEEEEEee
Q 012356 92 IVLVTGCLT--GKDNV----KKKFTQTFFLA 116 (465)
Q Consensus 92 ~v~V~G~~~--~~~~~----~~~F~q~F~L~ 116 (465)
++-..|.-+ ..+.+ ...|+..|.+.
T Consensus 121 vvE~~~~Gtv~~TGkp~~~Y~~~yi~V~rVr 151 (185)
T 3jum_A 121 WVECRGEGAIVFPGYPRGQYRNHFLHSFRFE 151 (185)
T ss_dssp EEEEEEEEEECCTTSCCEEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCCccceEEEeEEEEEEEE
Confidence 666655543 33322 24455556553
No 244
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=92.52 E-value=0.37 Score=40.63 Aligned_cols=97 Identities=8% Similarity=-0.032 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCC---cccchhhHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCc
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNG---SMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKG 90 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~---~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d~q~s~~~~ 90 (465)
+.||+.||..|+ .+.+.|..+|.++..+...+... -.....|+++|.+.+..|. +..++++|..+-+ .++.
T Consensus 7 ~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~~~~p~~g~~~G~~av~~~~~~~~~~~~~~~~~~~~~~~---~gd~ 83 (143)
T 3dm8_A 7 WRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRIYRYHRESVML---GIDS 83 (143)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCTTTCTTCEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEE---CSSE
T ss_pred HHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCCCcCCCCccccCHHHHHHHHHHHHHhcCcceEEEEEEEE---cCCe
Confidence 789999999998 67899999999998766555321 0114689999999887653 3345566655432 2344
Q ss_pred EEEEEEEEEEc--CCCC-cccEEEEEEee
Q 012356 91 VIVLVTGCLTG--KDNV-KKKFTQTFFLA 116 (465)
Q Consensus 91 i~v~V~G~~~~--~~~~-~~~F~q~F~L~ 116 (465)
+++.+...... .+.. ...|++.|.+.
T Consensus 84 v~v~~~~~~~~~~tG~~~~~~~~~~~~v~ 112 (143)
T 3dm8_A 84 AASMVRYSLTAAGTNRPISVRMALFTQFQ 112 (143)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEEE
T ss_pred EEEEEEEEEEEeCCCCEEEEEEEEEEEEE
Confidence 44333333222 2222 24677778773
No 245
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=92.43 E-value=1.1 Score=37.16 Aligned_cols=112 Identities=7% Similarity=-0.035 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHh----cCCCCcceEEEeeeeeeeeCC
Q 012356 14 VVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRIL----SLNYEDYTAEIKTADAQDSYE 88 (465)
Q Consensus 14 ~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~----~l~~~~~~~~i~~~d~q~s~~ 88 (465)
+--..++.+||..++ .+.+.|..+|.++.++...+.. ....|.++|.+.+. .++ ...+++|..+..+...
T Consensus 8 ~~I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~~~~~~~---~~~~G~~air~~~~~~~~~~~-~~~~~~~~~~~v~~~g- 82 (142)
T 3f7s_A 8 SEIRQLIERWMQAVRDRDIPGIIAPYADDIVAFDAIQA---LQFKGKSAYTAHWEMCMGMCT-GPMVFELAQLTVHAAG- 82 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECSSSS---SCEESHHHHHHHHHHHHHTCC-SCEEEEEEEEEEEEET-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEecCCCC---ccccCHHHHHHHHHHHHHhCC-CceEEEEeeeEEEEcC-
Confidence 344677788888887 8889999999998765433321 13468888888753 222 2456777776665443
Q ss_pred CcEEEEEEEEEEcC--CCCcccEEEEEEeeecCCCcEEEEcceEe
Q 012356 89 KGVIVLVTGCLTGK--DNVKKKFTQTFFLAPQDKGGYFVLNDVFR 131 (465)
Q Consensus 89 ~~i~v~V~G~~~~~--~~~~~~F~q~F~L~~~~~~~y~v~nDifr 131 (465)
+..++...-.++.. +.....+.-|+++...+. +|.|..+=.-
T Consensus 83 d~A~~~~~~~~~~~~~~g~~~~~r~T~v~~r~~g-~W~ivh~H~S 126 (142)
T 3f7s_A 83 DLALAHWLNRCGPGDDESQCGFMRATVGYRRQGG-QWQVIHEHWS 126 (142)
T ss_dssp TEEEEEEEEEEEESSCGGGCEEEEEEEEEEEETT-EEEEEEEEEE
T ss_pred CEEEEEEEEEEeeecCCCcceeeEEEEEEEEeCC-EEEEEEEeec
Confidence 33333333333321 223334455677777765 8998876553
No 246
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=92.42 E-value=0.52 Score=44.83 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhc-CCCCcceEEEeeeeeeeeCCCcEE
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILS-LNYEDYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~-l~~~~~~~~i~~~d~q~s~~~~i~ 92 (465)
|-+.=|.+|++.|+ .+-+.+..||.++..|.-+-. ....|+++|..++.. +- +.+++...--+.+.-+++.-
T Consensus 193 i~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~LepPf~----~PIvGreAI~~y~~~eaq--~~~l~P~~g~~ep~e~g~~q 266 (323)
T 3mg1_A 193 VTNATVLNYMDNLNANDFDTLIELFTSDGALQPPFQ----RPIVGKENVLRFFREECQ--NLKLIPERGVTEPAEDGFTQ 266 (323)
T ss_dssp BCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTS----CCEESHHHHHHHHHHHCT--TCEEEEEEEEEEECGGGCEE
T ss_pred cchHHHHHHHHHhcccCHHHHHHHccCCCeeCCCCC----CCccCHHHHHHHHHHHhc--cCEEeeccCccccccCCCce
Confidence 44677899999999 889999999999999975533 268999999999964 33 45777777777888888899
Q ss_pred EEEEEEEEcCC---CCcccEEEEEEeeecCCCcEEEEcceE
Q 012356 93 VLVTGCLTGKD---NVKKKFTQTFFLAPQDKGGYFVLNDVF 130 (465)
Q Consensus 93 v~V~G~~~~~~---~~~~~F~q~F~L~~~~~~~y~v~nDif 130 (465)
|.|+|.+++.= ...+.-.=.|.|-++++ -|+|.=|.+
T Consensus 267 i~vtGkVqTpwfGv~v~mnVaW~F~lN~~gk-I~~v~i~LL 306 (323)
T 3mg1_A 267 IKVTGKVQTPWFGGNVGMNIAWRFLLNPEGK-IFFVAIDLL 306 (323)
T ss_dssp EEEEEEEECTTTGGGCCEEEEEEEEECTTSC-EEEEEEEEB
T ss_pred EEEEEEEEcccCCccccccceeEEEECCCCc-EEEEEehhh
Confidence 99999998642 23356778899988887 788876655
No 247
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=92.38 E-value=0.25 Score=43.21 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhccCcchhcccccCCce---eeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeeeeeeeeCC
Q 012356 14 VVGNAFVEQYYHILHQSPGLVHRFYQDSSL---LSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYE 88 (465)
Q Consensus 14 ~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~---~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d~q~s~~ 88 (465)
+--.+-|++|+.++.++.+.++.||.++.+ +. -..|......|+++|.+++..+. |.+ .++..+....+-+
T Consensus 19 ~~Nr~vV~~~l~~~~~D~~~~~~LfAeD~v~~~~e--~~~G~P~~~~Gre~l~~~~~~~~~~~~~--~~~~~~~i~~t~D 94 (163)
T 3ff0_A 19 RKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWT--TDTGSPIVIRGKDKLAEHAVWSLKCFPD--WEWYNIKVFETDD 94 (163)
T ss_dssp HHHHHHHHHHHTCCGGGGGGGGGGEEEEEEEEESS--CSSSSCEEEESHHHHHHHHHHHHHHSTT--CEEEEEEEEEBSS
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCcccceeeE--ECCCCCcceecHHHHHHHHHHHHhhCCC--ceeeeEEEEEcCC
Confidence 344778999999999999999999999987 44 22345556899999999886432 222 4566666776655
Q ss_pred C-cEEEEEEEEEEc--CCCC----cccEEEEEEe
Q 012356 89 K-GVIVLVTGCLTG--KDNV----KKKFTQTFFL 115 (465)
Q Consensus 89 ~-~i~v~V~G~~~~--~~~~----~~~F~q~F~L 115 (465)
. -|+|-..|.-+. .+.+ ...|++.|.|
T Consensus 95 pd~vvvE~~~~g~i~~tG~~~~~y~~~yi~v~~v 128 (163)
T 3ff0_A 95 PNHFWVECDGHGKILFPGYPEGYYENHFLHSFEL 128 (163)
T ss_dssp TTEEEEEEEEEEEECCTTSCCEEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEEEEcCCCcccccEEEeEEEEEEE
Confidence 3 456556554443 2333 1446666666
No 248
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.21 E-value=0.23 Score=41.60 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=54.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEe-EEE---------EccCCC-----cceEEEEEeCChHHHHHHHHhCCCcc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKN-GVQ---------VRSNKQ-----GYCFGFVAFETPGSVQSALEASPILI 367 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~-~v~---------~~~~~~-----~~gfaFV~F~~~~~a~~Al~~~~~~i 367 (465)
.-|.|=+.|.+ ....+-+.|++||.|..- .+. ..+.++ ....-.|.|++..+|++||...|..|
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 56667778765 456688899999998651 100 000011 34567999999999999999999999
Q ss_pred cccceEEeeccc
Q 012356 368 GDRPADVEAKRA 379 (465)
Q Consensus 368 ~g~~i~Ve~~r~ 379 (465)
+|.-|-|.+..+
T Consensus 87 ~G~mIGV~Py~~ 98 (132)
T 3p3d_A 87 NGVLLGVIPYTK 98 (132)
T ss_dssp TTEECEEEECCH
T ss_pred CcEEEEEEECCH
Confidence 999888887754
No 249
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=92.20 E-value=0.92 Score=37.62 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhcc--CcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEE
Q 012356 17 NAFVEQYYHILHQ--SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 17 ~~Fv~~YY~~l~~--~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~q~s~~~~i~ 92 (465)
..|++.+++-... +-+.|-..|.++.+|..... ...|.+++.+.+..+ .+.+.++.|..+......++.++
T Consensus 13 ~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv~p~G-----~~~g~~~~~~~~~~~~g~~pgl~i~i~~l~~~~~~~d~~v 87 (128)
T 1tp6_A 13 HVAIRDWLAGDSRADALDALMARFAEDFSMVTPHG-----VVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGAT 87 (128)
T ss_dssp HHHHHHHHHTCCCTTHHHHHHTTEEEEEEEECTTS-----CEEEHHHHHHHHHHHTTCSTTCEEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHcCCCcHhHHHHHHHhcCCCEEEECCCC-----eECCHHHHHHHHHHhhCCCCCeEEEEEEEEEEeecCCEEE
Confidence 3455555554443 56788889999988875432 478999999888643 23467888888877666666666
Q ss_pred EEEEEEEEcCCCCcccEEEEEEeeecCCC--cEEEEcce
Q 012356 93 VLVTGCLTGKDNVKKKFTQTFFLAPQDKG--GYFVLNDV 129 (465)
Q Consensus 93 v~V~G~~~~~~~~~~~F~q~F~L~~~~~~--~y~v~nDi 129 (465)
|.-.+.=...+....+++ |.+|..+.++ .|.++.++
T Consensus 88 v~y~~~~~~~~~~~~rrs-T~v~~~~~~g~~~W~~lHET 125 (128)
T 1tp6_A 88 LAYREIQSDAAGRSERLS-TVVLHRDDEGRLYWRHLQET 125 (128)
T ss_dssp EEEEEEEEETTEEEEEEE-EEEEEECTTCCEEEEEEEEE
T ss_pred EEEEEEeccCCceeEEEE-EEEEEeCCCCCEEEEEEEEE
Confidence 665433233333355677 8888555443 48888776
No 250
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=91.88 E-value=1.1 Score=37.86 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC----CCcceEEEeeee-eeee
Q 012356 12 AQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN----YEDYTAEIKTAD-AQDS 86 (465)
Q Consensus 12 ~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~----~~~~~~~i~~~d-~q~s 86 (465)
..+|-..|-+.|--+..++.+.|..+|.++..+++.+..| ...|.++|.+.+.+-. |....+.+..++ .+..
T Consensus 9 ~~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~~i~~~g---~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 85 (145)
T 3soy_A 9 KQEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRG---HERGWSQIAENFYGTTMGKTFSKRTLKLDAPPAIHVY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCEEEETTE---EEESHHHHHHHCCCCCCCCTEEEEEEEESSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeEEEcCCC---cccCHHHHHHHHHHhhhhccccccceEEeeeeEEEEc
Confidence 3466666666556666699999999998764333322222 3689999998876422 222344555555 3433
Q ss_pred CCCcEEEEE----EEEEEcCCCC-cccEEEEEEeeecCCCcEEEEcce
Q 012356 87 YEKGVIVLV----TGCLTGKDNV-KKKFTQTFFLAPQDKGGYFVLNDV 129 (465)
Q Consensus 87 ~~~~i~v~V----~G~~~~~~~~-~~~F~q~F~L~~~~~~~y~v~nDi 129 (465)
++..++.. .+.+..++.+ ...+..|+++....+++|.|..+=
T Consensus 86 -gd~A~v~~~~~~~~~~~~~G~~~~~~~r~T~V~~r~~~ggWkIvh~H 132 (145)
T 3soy_A 86 -GNAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTGWRIVHVH 132 (145)
T ss_dssp -TTEEEEEEEEEEEEEETTTCCEEEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred -CCEEEEEEEEEEEEEEcCCCCeeeeEEEEEEEEEEcCCCCEEEEEEe
Confidence 33222222 2333222322 234566666666443489988743
No 251
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=91.33 E-value=0.15 Score=42.95 Aligned_cols=59 Identities=7% Similarity=0.108 Sum_probs=42.8
Q ss_pred HHHHHHHHhhcc------CcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeee
Q 012356 18 AFVEQYYHILHQ------SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTA 81 (465)
Q Consensus 18 ~Fv~~YY~~l~~------~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~ 81 (465)
.-|++||.+++. +.+.|..||.++.++...+. ...|.++|.+.+..+ .|.++++.+...
T Consensus 6 ~~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~~~~~~-----~~~G~~ai~~F~~~~~~a~~~~~~~~~~~ 72 (131)
T 3er7_A 6 TTLDRYFDLFDASRTDEKAFDDLISLFSDEITFVLNGQ-----EQHGIDAWKQFVRMVFTANQDIKHMYAGW 72 (131)
T ss_dssp CHHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHEEEEEEEECCC
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHHhCCCeEecCCCC-----CcCChHHHHHHHHHHHhhCcCceEEEEEE
Confidence 358999999972 37889999999999932222 468999999999754 244566656553
No 252
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=91.18 E-value=1.9 Score=35.72 Aligned_cols=110 Identities=12% Similarity=-0.022 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEE
Q 012356 13 QVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 13 ~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i~ 92 (465)
.+|-..|.+.|--++.++.+.|..+|.++..+++.+. | ....|.++|..+...+.-....+.+..+..+...++.++
T Consensus 11 ~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~~~~-g--~~l~G~~~I~a~r~~~~~~~~~~~~~~~~i~~~g~d~A~ 87 (129)
T 2owp_A 11 AQVQAAFVEYERALVENDIEAMNALFWHTPETVRYGI-A--EVQHGGEAIRAWRERCEPVPKSRKLHRTVVTTFGTDFAT 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEEECS-S--CEEESHHHHHHHHHHSCCCCTTCEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEEeCC-C--CccCCHHHHHHHHHhcCCCCCceeecccEEEEecCCEEE
Confidence 5666677665556666999999999999875322222 1 257899999997765542112344544444433323333
Q ss_pred EEEEEEEEcCCCCcccEEEEEEeeecC--CCcEEEEcce
Q 012356 93 VLVTGCLTGKDNVKKKFTQTFFLAPQD--KGGYFVLNDV 129 (465)
Q Consensus 93 v~V~G~~~~~~~~~~~F~q~F~L~~~~--~~~y~v~nDi 129 (465)
+.+ .+...+.. ..+-||.++...+ . +|.|...=
T Consensus 88 ~~~--~~~~~~~~-~~gr~t~vw~r~~~~~-gWrIv~~H 122 (129)
T 2owp_A 88 VST--EFTSDATP-LLGRQMQTWARLSPAD-GWKIVAAH 122 (129)
T ss_dssp EEE--EEEETTEE-EEEEEEEEEEECSTTT-CEEEEEEE
T ss_pred EEE--EEEECCCC-cceEEEEEEEECCCCC-CEEEEEee
Confidence 322 33333322 3344555555555 5 88887643
No 253
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=91.12 E-value=1.7 Score=35.55 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=67.4
Q ss_pred HHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC-C--CcceEEEeeeeeeeeCCCcEEE
Q 012356 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN-Y--EDYTAEIKTADAQDSYEKGVIV 93 (465)
Q Consensus 18 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~-~--~~~~~~i~~~d~q~s~~~~i~v 93 (465)
+-|..|++-++ .+.+.|.+-|++++.|.... +|... ....++-.+ +..-| . .....+|.+||..- +.-++
T Consensus 13 ~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~-~g~~~-~~~~~~~~~-v~~~p~~~~~~~~~~i~~I~i~g---d~A~a 86 (120)
T 3fka_A 13 ALVETYVMAMTRGDRPALERIFFGKASEVGHY-EGELL-WNSRDAFIA-MCEDAADAETDPFWAISSVSVQG---DIAML 86 (120)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEE-TTEEE-EEEHHHHHH-HHHHHCCSSCCCCEEEEEEEEET---TEEEE
T ss_pred HHHHHHHHHHHhcCHHHHHhhCCCCeEEEEec-CCcEE-EcCHHHHHh-hcCCccCCCCCceEEEEEEEEEC---CEEEE
Confidence 44889999988 78999999999999885543 23322 122233333 33212 1 23356787777753 44444
Q ss_pred EEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEee
Q 012356 94 LVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRF 132 (465)
Q Consensus 94 ~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~ 132 (465)
.|. +.. ....|+..|.|.+.+. +|-|.|=+|+|
T Consensus 87 ~v~--~~~---~~~~f~D~~~L~k~dg-~WkIv~K~~~~ 119 (120)
T 3fka_A 87 HVE--NDW---AGMRFDDFLTVLLHEG-SWRIVSKVYRI 119 (120)
T ss_dssp EEE--EEE---TTEEEEEEEEEEEETT-EEEEEEEEEEE
T ss_pred EEE--EEc---CCCceEEEEEEEEeCC-EEEEEEEEEEc
Confidence 444 222 3467999999999887 99999999976
No 254
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=91.06 E-value=2.6 Score=34.43 Aligned_cols=110 Identities=10% Similarity=0.051 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcE
Q 012356 12 AQVVGNAFVEQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGV 91 (465)
Q Consensus 12 ~~~Vg~~Fv~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i 91 (465)
..+|-..|.+..--+...+.+.|..+|.++..+...+. +. ...|.++|.+.-..++-....+.+..+......++..
T Consensus 13 ~~ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~~-~~--~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~A 89 (129)
T 2rcd_A 13 LADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGA-GE--NLYGIEEIRAFRLARPSAGLDRALRNTVITTYGHDMA 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEET-TE--EEESHHHHHHHHHHSCCTTCCCEEEEEEEEEBTTSEE
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEECC-CC--ccCCHHHHHHHHHhcCCCCCceEEEEEEEEEecCcEE
Confidence 34555555443344445899999999998865432221 11 4679999999333344222234444444444433323
Q ss_pred EEEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcc
Q 012356 92 IVLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLND 128 (465)
Q Consensus 92 ~v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nD 128 (465)
+ ++..+.... ....+.+|+++...+. +|.|.+.
T Consensus 90 ~--~~~~~~~~~-~~~~g~~t~v~~r~~~-gWrIv~~ 122 (129)
T 2rcd_A 90 V--ASTEFTRTG-STKIGRQMQTWVKMPE-GWRIVAA 122 (129)
T ss_dssp E--EEEEEECSS-CCSCEEEEEEEEEETT-EEEEEEE
T ss_pred E--EEEEEEEcC-CCCceeEEEEEEECCC-cEEEEEE
Confidence 3 333444332 1244666888887776 8998764
No 255
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=90.91 E-value=1.1 Score=37.88 Aligned_cols=107 Identities=11% Similarity=0.125 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHH-HHhc-CC-CCcceEEEeeeeeeeeCCCc
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAIND-RILS-LN-YEDYTAEIKTADAQDSYEKG 90 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~-~~~~-l~-~~~~~~~i~~~d~q~s~~~~ 90 (465)
--...+..||.-|+ .+.+.|..+|.++.++...+. ...|.++|.+ .+.. +. +....+.|..+...... +.
T Consensus 31 ~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~~~~~g-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~g-d~ 104 (148)
T 3bb9_A 31 AAGNVVKQFHAALQMGNEAIVRQSLAANVQIYEGGK-----VERSLTEYANHHMLADMAYLKGLTITPKEHQITITG-DI 104 (148)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTE-----EECSHHHHHHTHHHHHHHHHHTEEEEEEEEEEEEET-TE
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHhhCCCeEEEeCCC-----ccCCHHHHHHHhHHHHHHhccCceEEeeeEEEEEcC-CE
Confidence 44677888888887 899999999999887654332 2678999988 4322 11 12345566655555433 33
Q ss_pred EEEEEEEEEEcC--CCC-cccEEEEEEe-eecCCCcEEEEcc
Q 012356 91 VIVLVTGCLTGK--DNV-KKKFTQTFFL-APQDKGGYFVLND 128 (465)
Q Consensus 91 i~v~V~G~~~~~--~~~-~~~F~q~F~L-~~~~~~~y~v~nD 128 (465)
.++...-.+... +.+ ...+.-|++| ...+. +|.|.+.
T Consensus 105 A~~~~~~~~~~~~~G~~~~~~~r~T~v~~~k~~g-~WkIvh~ 145 (148)
T 3bb9_A 105 AISTSISHAQGEYKGKSIDSMTMETLVLIKQADG-RWKITHV 145 (148)
T ss_dssp EEEEEEEEEEECCC--CEEEEEEEEEEEEECTTS-CEEEEEE
T ss_pred EEEEEEEEEeeeeCCcccccceEEEEEEeEEcCC-cEEEEEE
Confidence 333333333322 111 2345567777 66665 8998764
No 256
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.74 E-value=0.24 Score=39.28 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=45.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCC---CcceEEEEEeCChHHHHHHHHhC-CCcc
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNK---QGYCFGFVAFETPGSVQSALEAS-PILI 367 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~---~~~gfaFV~F~~~~~a~~Al~~~-~~~i 367 (465)
.-+|.|+.||...|++++.+.+..+-.+......--+.. ....-|||.|.+.+++..-.+.. +..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 468999999999999998777765433321111000111 22356899999999999999988 7766
No 257
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=89.30 E-value=1.7 Score=36.56 Aligned_cols=113 Identities=5% Similarity=0.012 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccch-hhHHHHHHHHhcCC-----CCcceEEEeeeeeeeeC
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTV-TTMKAINDRILSLN-----YEDYTAEIKTADAQDSY 87 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~-~g~~~I~~~~~~l~-----~~~~~~~i~~~d~q~s~ 87 (465)
--..|+..|+..|+ .+.+.|..+|.++..+...+. .. .|.++|.+.+..+. +..+.|.|.++.....
T Consensus 20 ~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~~~g-----~~~~G~~~i~~~~~~~~~~~~~~~~~~h~~~~~~i~~~- 93 (155)
T 2rfr_A 20 EIRELIARYGPLADSGDAEALSELWVEDGEYAVVGF-----ATAKGRAAIAALIDGQTHRALMADGCAHFLGPATVTVE- 93 (155)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS-----CCEESHHHHHHHHHSHHHHHHHHHCEEEEECCCEEEEE-
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCceEEEcCCC-----ccccCHHHHHHHHHhccccccCCCceeEeCCCeEEEEe-
Confidence 34578899999998 788899999999988776542 34 89999999887652 2235666665544433
Q ss_pred CCcEEEEEEEEEE--cCCCCcccE---EEEEEeeecCCCcEEEEcceEeeecc
Q 012356 88 EKGVIVLVTGCLT--GKDNVKKKF---TQTFFLAPQDKGGYFVLNDVFRFVEE 135 (465)
Q Consensus 88 ~~~i~v~V~G~~~--~~~~~~~~F---~q~F~L~~~~~~~y~v~nDifr~~~~ 135 (465)
++...+...-.+. ..+. ...+ ..++.|...+. +|.|..=.+.++..
T Consensus 94 gd~A~~~~~~~~~~~~~~~-~~~~~~g~y~d~~~r~~g-~Wri~~r~~~~~~~ 144 (155)
T 2rfr_A 94 GDTATARCHSVVFRCVSGT-FGSHRVSANRWTFRRTPA-GWRAVRRENALLDG 144 (155)
T ss_dssp TTEEEEEEEEEEEEEETTE-EEEEEEEEEEEEEEEETT-EEEEEEEEEEESSS
T ss_pred CCEEEEEEEEEEEEEcCCC-ceEEEeeeeEEEEEECCC-EEEEEEEEEEecCC
Confidence 2333332222221 1221 1111 13356666665 89998876666543
No 258
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=89.07 E-value=2.6 Score=35.89 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhhcc--CcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeeeeeeC
Q 012356 12 AQVVGNAFVEQYYHILHQ--SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQDSY 87 (465)
Q Consensus 12 ~~~Vg~~Fv~~YY~~l~~--~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~q~s~ 87 (465)
...--..|+..|+..|+. +.+.|..+|.++..+..... | ...+.|.++|.+.+..+ ++..+.+.|.++......
T Consensus 26 d~~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~~~~~-g-~~~~~G~~~i~~~~~~~~~~~~~~~h~~~~~~I~~~~ 103 (163)
T 3b8l_A 26 DRLAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLSGI-G-LTPQVGHAGIREFFTNVFANMSHHAHYLTNFAVTGYE 103 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEECGGG-T-CCCEEHHHHHHHHHHHHHHHEEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEEecCC-C-CCCccCHHHHHHHHHHhhccCCceEEEecCEEEEEeC
Confidence 334556899999999986 78899999999988765421 1 12478999999888653 233345566655544222
Q ss_pred CCcEEEEEEEEE--EcCCCCcc--cEEEEEEeeecCCCcEEEEcceEeeec
Q 012356 88 EKGVIVLVTGCL--TGKDNVKK--KFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (465)
Q Consensus 88 ~~~i~v~V~G~~--~~~~~~~~--~F~q~F~L~~~~~~~y~v~nDifr~~~ 134 (465)
++...+.....+ ...+.... .-.-+++|...+. +|.|..-.+.+.-
T Consensus 104 gd~A~~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg-~WrI~~r~~~~~~ 153 (163)
T 3b8l_A 104 GDTASMRAYVIGMGVGKDGRAVTVNGRYFFEVRRTEK-GWKATRYTMDFLM 153 (163)
T ss_dssp SSEEEEEEEEEEEEEETTSCEEEEEEEEEEEEEEETT-EEEEEEEEEEESS
T ss_pred CCEEEEEEEEEEEEEcCCCCeEEEEEEEEEEEEEeCC-EEEEEEEEEEEEe
Confidence 333333222222 11211211 1234455666665 8999887776653
No 259
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=88.72 E-value=2.5 Score=34.72 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeee
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTA 81 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~ 81 (465)
-.+.|+.||..|+ .+.+.|..||.++..+.++.. .....|.++|.+++..++-....++|..+
T Consensus 7 ~~~~v~~~~~a~~~~D~~~l~~llaeD~v~~~P~~---~~~~~Gr~~~~~~~~~~~~~~~~~~i~~~ 70 (128)
T 3en8_A 7 IREALNAHWQASAAGDFDAEHDIYDDDAICDYPQS---GERILGRMNLQALRSHHPGKPAGFEVRRI 70 (128)
T ss_dssp HHHHHHHHHHHHHHTCHHHHTTTEEEEEEEEETTT---TEEEESHHHHHHHHHHTTCSCSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCCC---CCEEECHHHHHHHHHHCCCCCcceEEEEE
Confidence 4577899999887 689999999999999888643 12468999999988776622112555543
No 260
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=88.65 E-value=2.3 Score=34.00 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeeee
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTAD 82 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d 82 (465)
.+.|+.||..|+ .+.+.|..||.++........ .....|.++|.+.+..+- |-+.+++|..+-
T Consensus 5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~v~h~~~~---~~~~~G~~~~~~~~~~~~~~~p~~~~~i~~~~ 70 (117)
T 3ff2_A 5 LETAKAMIAAYNAQDVDTYVSYMTDDACEANYRG---DVVREGKEGTRSGLAAAFARWPQNHAEIKDAQ 70 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEETTS---CEEECHHHHHHHHHHHHHHHCTTCEEEEEEEE
T ss_pred HHHHHHHHHHHcccCHHHHHHhcCCcEEEEeCCC---CccccCHHHHHHHHHHHHhhCCCceEEEEEEE
Confidence 367899999998 678899999998876554311 124689999998875431 225566766543
No 261
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=88.53 E-value=0.3 Score=41.89 Aligned_cols=31 Identities=0% Similarity=-0.145 Sum_probs=25.3
Q ss_pred eEEEEccCCCcceEEEEEeCChHHHHHHHHhC
Q 012356 332 NGVQVRSNKQGYCFGFVAFETPGSVQSALEAS 363 (465)
Q Consensus 332 ~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~ 363 (465)
++|.++.. +++||+||+|.+.++|++||+.+
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~ 33 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQY 33 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHH
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhh
Confidence 34555544 58999999999999999999876
No 262
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=88.04 E-value=0.61 Score=37.91 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCC---C-cccchhhHHHHHHHHhcC--CCCcceEEEeee
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSN---G-SMTTVTTMKAINDRILSL--NYEDYTAEIKTA 81 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~---~-~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~ 81 (465)
-...+++.||..++ .+.+.|..+|.++..+.-.... + ......|+++|.+.+..+ .|.+++++|..+
T Consensus 9 ~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~~p~~~~~~g~~~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T 3h3h_A 9 FAQQFSREWIDAWNAHDLDAILSHYADGFEMSSPMIVQIAGEPSGRLRGKEQVGAYWREALRMIPDLHFEWIAT 82 (122)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECHHHHHHHC-CCCEEEHHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHHHHHHHHHHHhccCHHHHHHhcCCCEEEECCCcccccCCCCCcEEcHHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 35689999999998 7899999999999988754100 0 001578999999988643 133667777654
No 263
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=87.78 E-value=3.4 Score=32.87 Aligned_cols=104 Identities=10% Similarity=-0.004 Sum_probs=58.2
Q ss_pred HHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEEEEEE
Q 012356 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVIVLVT 96 (465)
Q Consensus 18 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i~v~V~ 96 (465)
...++||.-|. .+.+.|..++.++-++...+ | ...+.+++.+.+.+-......+.+..+..+...+..+++. .
T Consensus 10 ~l~~~~~~A~~~~D~~~l~~l~~~d~~~~~~~--G---~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~g~~a~~~~-~ 83 (123)
T 2r4i_A 10 DCEKKLLTAIQNNDVESLEVLLHDDLLFIIPS--G---ETVTKETDIAAYSSGKIALRAVVPSDYIIRIIHDTVVVSV-N 83 (123)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--S---CEECHHHHHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEE-E
T ss_pred HHHHHHHHHHHhCCHHHHHhhhCcCeEEECCC--C---CCccHHHHHHHHhcCCeEEEEEeecccEEEEECCEEEEEE-E
Confidence 34566666554 78999999999975554432 3 2456777666666533222345666777776655444433 2
Q ss_pred EEEE--cCCCC-cccEEEEEEeeecCCCcEEEEcc
Q 012356 97 GCLT--GKDNV-KKKFTQTFFLAPQDKGGYFVLND 128 (465)
Q Consensus 97 G~~~--~~~~~-~~~F~q~F~L~~~~~~~y~v~nD 128 (465)
-.+. ..+.. ...+-+|.+....+. +|.|...
T Consensus 84 ~~~~~~~~g~~~~~~~r~t~vw~r~~g-~W~iv~~ 117 (123)
T 2r4i_A 84 IEIKGEYMEHTLDNTFRYLRVWKLFDG-NWKVIAG 117 (123)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEETT-EEEEEEE
T ss_pred EEEEEEECCcceeEEEEEEEEEEEeCC-eEEEEEE
Confidence 3332 22222 122334445555555 8887653
No 264
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=87.45 E-value=2 Score=34.30 Aligned_cols=90 Identities=7% Similarity=-0.025 Sum_probs=57.3
Q ss_pred HHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEEE
Q 012356 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKGVIVL 94 (465)
Q Consensus 18 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d~q~s~~~~i~v~ 94 (465)
+.|+.||..|+ .+.+.|..|+.++-.....+. ....|++++.+.+..+. +.+.+++|.++=+ .++ +|.
T Consensus 4 ~~v~~~~~a~~~gD~~~~~~~ladDv~w~~~g~----~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~i~---~Gd--~Vv 74 (112)
T 3f14_A 4 TTHYSIAQHFSSGDFPAVYACFNDIIEWNIIGN----QVVKGKADVIDFCNKMLPEMKGAVLTNDNVIQ---NEN--QIV 74 (112)
T ss_dssp HHHHHHHHHHHTTCGGGTGGGEEEEEEEEETTT----EEEESHHHHHHHHHHHHHHHHTSEEEEEEEEE---CSS--EEE
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCceEEEEcCC----ccEecHHHHHHHHHHHHhhcCCcEEEEEEEEE---eCC--EEE
Confidence 57999999998 567889999998865444443 14679999988876543 1134667666332 233 445
Q ss_pred EEEEEE--cCCC--CcccEEEEEEee
Q 012356 95 VTGCLT--GKDN--VKKKFTQTFFLA 116 (465)
Q Consensus 95 V~G~~~--~~~~--~~~~F~q~F~L~ 116 (465)
|.|.+. ..+. ....|+..|.+.
T Consensus 75 v~~~~~~~~~~g~~~~~~~~~vf~~~ 100 (112)
T 3f14_A 75 IEGKCRYFDAEGKEAFVSYCDIYRFE 100 (112)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEEEEEEEEEe
Confidence 555544 2222 236688888884
No 265
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=86.91 E-value=6.7 Score=31.95 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEE
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~q~s~~~~i~ 92 (465)
=..-+..|+.-++ .+.+.|...|++++.+.....+|.. .....++..+.+... +.....+.|.+|+.. ++.-+
T Consensus 14 I~~~~~~y~~a~~~~D~~~l~~~f~~da~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~i~---gd~A~ 89 (128)
T 3blz_A 14 IVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDNKL-TGGPIQGLFDVIDNVFHPSPEAKAAIARIDIV---GTAAS 89 (128)
T ss_dssp HHHHHHHHHHHHHHTCHHHHGGGEEEEEEEEEECTTSCE-EEEETHHHHHHHHHTCCCCTTCEEEEEEEEEE---TTEEE
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhhCCCcEEEEEeCCCcE-EecCHHHHHHHHHhcCCCCccccCeEEEEEEE---CCEEE
Confidence 3566888999888 7889999999999887543212221 122345555555443 333455666655543 23334
Q ss_pred EEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEeeec
Q 012356 93 VLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFVE 134 (465)
Q Consensus 93 v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~~~ 134 (465)
+.|... .. ....|...|.|...+. +|-|.+-+|....
T Consensus 90 a~~~~~-~~---~~~~~~d~~~l~k~dg-~WkI~~~~~~~~~ 126 (128)
T 3blz_A 90 ARIDTD-DI---SGFRFTDFFNLLKVEG-KWTVVSKIYHTHP 126 (128)
T ss_dssp EEEEEE-EE---TTEEEEEEEEEEEETT-EEEEEEEEEEECC
T ss_pred EEEEEE-Ec---CCCceEEeEEEEEECC-EEEEEEEEEEecc
Confidence 444431 11 1356889999998876 9999999987653
No 266
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=86.86 E-value=3.2 Score=34.37 Aligned_cols=60 Identities=7% Similarity=-0.106 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 9 APSAQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 9 ~~~~~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
.....++..+.++.||..|. .+.+.|..++.++..+.+++. +......|+++|.+.|..+
T Consensus 7 ~~~~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~~pg~-~~~g~~~G~~~v~~~~~~~ 67 (134)
T 3dmc_A 7 SDNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMG-EFHGLNVGKERAKEFFTYV 67 (134)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEEESSG-GGBEEEESHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEEecCC-CCCccchhHHHHHHHHHHH
Confidence 34567889999999999987 788999999999998887764 2222578999998877543
No 267
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=85.95 E-value=3 Score=33.97 Aligned_cols=99 Identities=3% Similarity=0.006 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC-CCCcceEEEeeeeeeeeCCCc
Q 012356 13 QVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL-NYEDYTAEIKTADAQDSYEKG 90 (465)
Q Consensus 13 ~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l-~~~~~~~~i~~~d~q~s~~~~ 90 (465)
.+--.+.|+.||..++ .+.+.|..||.++..+...+.........|.++|.+.+..+ .|.+++++|..+-+ . ++-
T Consensus 16 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~p~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~i~~~~~--~-gd~ 92 (129)
T 3fh1_A 16 SEQTAEIMRRFNDVFQLHDPAALPELIAEECVIENTVPAPDGARHAGRQACVQLWSAIATQPGTRFDLEETFV--A-GDR 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEECSCSTTTCCEEESHHHHHHHHHHHHHCTTCEEEEEEEEE--E-TTE
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHhcCCCEEEECCCCCCCCCcccCHHHHHHHHHHHhcCCCceEEEeEEEE--c-CCE
Confidence 3445789999999887 78899999999998887653111112458999999988652 13356677654422 1 232
Q ss_pred EEEEEEEEEEcCCCCcccEEEEEEee
Q 012356 91 VIVLVTGCLTGKDNVKKKFTQTFFLA 116 (465)
Q Consensus 91 i~v~V~G~~~~~~~~~~~F~q~F~L~ 116 (465)
++ |...+.........++..|.+.
T Consensus 93 v~--~~~~~~~G~~~~~~~~~~~~~~ 116 (129)
T 3fh1_A 93 AT--IRWRYWMADGNSVRGVNLMRVQ 116 (129)
T ss_dssp EE--EEEEEECTTSCEEEEEEEEEEE
T ss_pred EE--EEEEEECCCeeEEeceEEEEEc
Confidence 33 3334443222234455566553
No 268
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=85.77 E-value=3.9 Score=35.05 Aligned_cols=112 Identities=9% Similarity=-0.099 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCC-CcceEEEeeeeeeeeCCCcEE
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNY-EDYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~-~~~~~~i~~~d~q~s~~~~i~ 92 (465)
--..++..|+..|+ .+.+.|..+|.++..+...+. ...|.++|.+.+..+-- ..+.|.|.++...... +...
T Consensus 15 ~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~~~g~-----~~~G~~~i~~~~~~~~~~~~~~h~~~~~~i~~~g-d~A~ 88 (170)
T 2chc_A 15 RIQALCARYCLTINTQDGEGWAGCFTEDGAFEFDGW-----VIRGRPALREYADAHARVVRGRHLTTDLLYEVDG-DVAT 88 (170)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEEETTE-----EEESHHHHHHHHHHHHHHCCCCEEEEEEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhcccCcEEEEeCCC-----CcCCHHHHHHHHHHhhcccceEEecCCeEEEEeC-CEEE
Confidence 34578999999998 678899999999988876543 56899999988765310 2345666655544332 3222
Q ss_pred EEEEEE--EEcCCCCcc--cEEEEEEeeecCCCcEEEEcceEeee
Q 012356 93 VLVTGC--LTGKDNVKK--KFTQTFFLAPQDKGGYFVLNDVFRFV 133 (465)
Q Consensus 93 v~V~G~--~~~~~~~~~--~F~q~F~L~~~~~~~y~v~nDifr~~ 133 (465)
+...-. +...+.... .-.-+.+|...+. +|.|..-.+.+.
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~g~y~d~~~r~dg-~Wri~~r~~~~~ 132 (170)
T 2chc_A 89 GRSASVVTLATAAGYKILGSGEYQDRLIKQDG-QWRIAYRRLRND 132 (170)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEEEEETT-EEEEEEEEEEEC
T ss_pred EEEEEEEEEEcCCCCEEEEEEEEEEEEEEECC-EEEEEEEEEEEe
Confidence 222211 122222211 1123444555554 899988776654
No 269
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=85.74 E-value=2.3 Score=33.61 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
-...|+.||..++ .+.+.|..+|.++..+...... ....|.++|.+.+..+
T Consensus 7 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~---~~~~G~~~i~~~~~~~ 58 (125)
T 1ohp_A 7 MTAVVQRYVAALNAGDLDGIVALFADDATVENPVGS---EPRSGTAAIREFYANS 58 (125)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHTTEEEEEEEESSTTS---CCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEECCCCC---CCccCHHHHHHHHHHh
Confidence 4678899999988 6789999999999877654211 1578999999988764
No 270
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=85.45 E-value=6.2 Score=32.69 Aligned_cols=50 Identities=8% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
-...|+.||..++ .+.+.|..||.++..+...+. ....|.++|.+.+..+
T Consensus 24 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~~~~----~~~~G~~~i~~~~~~~ 74 (149)
T 1nww_A 24 DEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPL----PPAYGRDAVEQTLAGL 74 (149)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEETTS----CCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEcCCC----CCccCHHHHHHHHHHH
Confidence 3567888999888 577999999999998876543 1468999999988754
No 271
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=85.29 E-value=4.4 Score=32.76 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhccC-----cchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEe-eeeeee
Q 012356 17 NAFVEQYYHILHQS-----PGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIK-TADAQD 85 (465)
Q Consensus 17 ~~Fv~~YY~~l~~~-----p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~-~~d~q~ 85 (465)
..+|++|+..++.. .+.|..+|.++.++.-+-. .+.|.++|...|..+ .|.+|++.+. .++.+.
T Consensus 6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~dP~~-----~~~G~~ai~~~~~~~~~~~~~~~f~~~~~~~~~~ 77 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYVDPLM-----QGEGQQGIAAMIEAARQKFPGYRFVLAGTPDGHG 77 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEECSSC-----EEEHHHHHHHHHHHHHHHSTTCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEECCCC-----CcCCHHHHHHHHHHHHHHCCCcEEEEccCcceeC
Confidence 46777887777632 3579999999999886543 489999999988543 2458888887 666654
No 272
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=85.08 E-value=2.3 Score=35.12 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHH-HHHhcCC--CCcceEEEeeeeeeeeCCCcEE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAIN-DRILSLN--YEDYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~-~~~~~l~--~~~~~~~i~~~d~q~s~~~~i~ 92 (465)
.+.|+.||..|+ .+.+.|..||.++..+...+.........|.++|. +.+..|. |.++++.|..+-+ . ++.|+
T Consensus 15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~-gd~v~ 91 (140)
T 3ec9_A 15 YQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEEWDGYTFKLDALHD--A-GDTVI 91 (140)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECTTSTTCEEECSHHHHHHHTHHHHHHHEEEEEEEEEEEEE--E-TTEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCeEEEEcCCCccceEEcCHHHHHHHHHHHHHhhCCcceeEEEEEEE--c-CCEEE
Confidence 356778888877 67899999999998876553111112468999995 4454332 2344555554432 1 33343
Q ss_pred EEEEEEEEc--CCCC-cccEEEEEEe
Q 012356 93 VLVTGCLTG--KDNV-KKKFTQTFFL 115 (465)
Q Consensus 93 v~V~G~~~~--~~~~-~~~F~q~F~L 115 (465)
+......+. .+.. ...|++.|.+
T Consensus 92 v~~~~~~~~~~tG~~~~~~~~~v~~v 117 (140)
T 3ec9_A 92 GVGRYSGTYRRTGKSFECRVAHVWRV 117 (140)
T ss_dssp EEEEEEEEETTTCCEEEEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEeEEEEEEEE
Confidence 332222221 2222 2356777777
No 273
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=84.93 E-value=2.1 Score=35.41 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcc-CcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeeeeeeCCCcEEEE
Q 012356 18 AFVEQYYHILHQ-SPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQDSYEKGVIVL 94 (465)
Q Consensus 18 ~Fv~~YY~~l~~-~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~q~s~~~~i~v~ 94 (465)
.|...|-.-|-. ++..|.+||..+|++.-..-+ ...+|...|..+|... ......+.|++. ++.|-||+
T Consensus 24 qlA~~Yi~AlT~hDy~~L~~FynrdsVf~D~ta~---~~YtG~r~Ii~Fl~RaH~gvLey~fnieHm-----fnsGsLVV 95 (154)
T 3gzb_A 24 QLAVKYMDALTEHDYKTLITFYNRDSIFFDKTAN---RKYTGGRFIIDFLERAHQGVLEYDFNIEHM-----YNAGSLVV 95 (154)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTCCTTCEEEETTTT---EEEESHHHHHHHHHHHTTTCCCCEEEEEEE-----EEETTEEE
T ss_pred HHHHHHHHHHhccCHHHHHHHhCccceeeeeccC---cceeCcHHHHHHHHHHhhhheeeccChhhh-----ccCCcEEE
Confidence 455667777764 999999999999999754321 2578999999999742 222334566653 34456677
Q ss_pred EEEEEEc
Q 012356 95 VTGCLTG 101 (465)
Q Consensus 95 V~G~~~~ 101 (465)
.+|.-..
T Consensus 96 miGnY~~ 102 (154)
T 3gzb_A 96 MIGNYHF 102 (154)
T ss_dssp EEEEEEE
T ss_pred EEcceee
Confidence 7787444
No 274
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=84.73 E-value=7.8 Score=33.79 Aligned_cols=111 Identities=8% Similarity=0.028 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCc-----------------eeeecCCCCcccchhhHHHHHHHHhcC--CCCcceE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSS-----------------LLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTA 76 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s-----------------~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~ 76 (465)
...+..||.-|+ .+.+.|..+|.+.. ++++.+. ....|.++|.+.+..+ .....++
T Consensus 15 ~~~~~~~~~A~~~gD~~~l~alwa~d~~~~~~~~~~~~~~~~~v~~v~Pg~----~~l~G~~~I~~~~~~~f~~~~~~~~ 90 (170)
T 3cnx_A 15 GLANTAFYEAMERGDFETLSSLWLTPADLGVDEEYHDPADAGVVSCVHPGW----PVLSGRGEVLRSYALIMANTEYIQF 90 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHBCCHHHHTC------CCCTTCCEEECTTC----CEEEHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhcCCcccccccccccccccccEEEEcCCC----ccccCHHHHHHHHHHHHccCCeeEE
Confidence 345667777776 88999999999773 3344432 1578999999877532 1111345
Q ss_pred EEeeeeeeeeCCCcEEEEEEEEEEcC--C-------CCc--ccEEEEEEeeecCCCcEEEEcceEeee
Q 012356 77 EIKTADAQDSYEKGVIVLVTGCLTGK--D-------NVK--KKFTQTFFLAPQDKGGYFVLNDVFRFV 133 (465)
Q Consensus 77 ~i~~~d~q~s~~~~i~v~V~G~~~~~--~-------~~~--~~F~q~F~L~~~~~~~y~v~nDifr~~ 133 (465)
.+..+....+. +..++.+...+... + .+. +++.-|+++...+. +|.|...=...+
T Consensus 91 ~~~dv~v~~~g-D~A~v~~~~~~~~~~~~~~g~~~~g~~~~~~~raT~Vfrr~~g-gWriv~hH~Sp~ 156 (170)
T 3cnx_A 91 FLTDVHVSVTG-DTALVTCTENILSGGPPPDDSDELGPLVGQLVVATNVFRRTPD-GWKLWSHHASPV 156 (170)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEEEEC---------CCCEEEEEEEEEEEECCTT-CCEEEEEEEEEC
T ss_pred EEEEEEEEEeC-CEEEEEEEEEEeccCCccccccccCccccceEEEEEEEEEECC-EEEEEEEecCCC
Confidence 55555544333 33555555555531 1 121 22556777777776 788877554433
No 275
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=84.60 E-value=5.1 Score=34.75 Aligned_cols=114 Identities=9% Similarity=-0.104 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHH-hcC--CCCcceEEEeeeeeeeeCCCc
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRI-LSL--NYEDYTAEIKTADAQDSYEKG 90 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~-~~l--~~~~~~~~i~~~d~q~s~~~~ 90 (465)
--..|+..|...|+ .+.+.|..+|.++..+..... + .+.|.++|.+.+ ..+ ++..+.+.|.++.......+.
T Consensus 32 ~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~~~~-g---~~~G~~~i~~~~~~~~~~~~~~t~H~i~n~~I~~~g~d~ 107 (176)
T 3a76_A 32 AIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTIEGI-G---TYKGPEGALDLANNVLWPMFHECIHYGTNLRLEFVSADK 107 (176)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETTT-E---EEEHHHHHHHHHHHTHHHHEEEEEEEEEEEEEEESSSSE
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEcCCC-c---cccCHHHHHHHHHHhhhcccCceEEecCCeEEEEcCCCe
Confidence 44688999999999 778899999999988765431 1 478999999988 542 344556777665554332133
Q ss_pred EEEEEEEEEE--cCCCC-cccE--EEEEEeeecCCCcEEEEcceEeee
Q 012356 91 VIVLVTGCLT--GKDNV-KKKF--TQTFFLAPQDKGGYFVLNDVFRFV 133 (465)
Q Consensus 91 i~v~V~G~~~--~~~~~-~~~F--~q~F~L~~~~~~~y~v~nDifr~~ 133 (465)
..+.+...+. ..... ...+ .-+..|...+. +|.|..-.+.+.
T Consensus 108 A~~~~~~~~~~~~~~~~~~~~~~gry~d~l~r~dg-~WrI~~r~~~~~ 154 (176)
T 3a76_A 108 VNGIGDVLLLGNLVEGNQSILIAAVFTDEYERRDG-VWKFSKRNACTN 154 (176)
T ss_dssp EEEEEEEEEEEEETGGGEEEEEEEEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEecCCCceEEEEEEEEEEEEEECC-EEEEEEEEEEEE
Confidence 3332211221 11111 1111 11334555554 899988776654
No 276
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=84.02 E-value=6.5 Score=32.03 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~ 70 (465)
..+.|+.||..++ .+.+.|..+|.++..+.... + ....|.++|.+++..+.
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~p~--~--~~~~G~~~~~~~~~~~~ 61 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVAHDLNQ--G--PREIGRAAFASFLQRMN 61 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT--S--CEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEEEEcCC--C--CceEcHHHHHHHHHHHh
Confidence 3578899999987 68899999999997655432 1 25789999999887764
No 277
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=83.65 E-value=5.1 Score=32.89 Aligned_cols=106 Identities=13% Similarity=0.139 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHh-hccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcE
Q 012356 13 QVVGNAFVEQYYHI-LHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGV 91 (465)
Q Consensus 13 ~~Vg~~Fv~~YY~~-l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i 91 (465)
++|- ...++|+.- +..+.+.|..+|.++-++.+.+ |. ..+.++..+.+.+-...-..+.+..+..+...++..
T Consensus 14 ~~I~-~l~~~~~~A~~~~D~~~l~~L~~~d~~~v~~~--G~---~~~~~~~l~~~~~g~~~~~~~~~~~~~v~~~g~d~A 87 (134)
T 3fsd_A 14 DDIA-FYEERLRAAMLTGDLKGLETLLADDLAFVDHT--GC---VKTKQTHLEPYRAGLLKLSRLDLSDAVVRAAGEDGR 87 (134)
T ss_dssp CCHH-HHHHHHHHHHHHTCHHHHHHHEEEEEEEECTT--SC---EECHHHHHHHHHTTCEEEEEEEEEEEEEEESSTTEE
T ss_pred HHHH-HHHHHHHHHHHhCCHHHHHhhcCCCEEEECCC--Cc---CccHHHHHHHHHcCCceEEEEEEeccEEEEeCCCEE
Confidence 3454 444566665 5599999999999986665532 22 233444444554322111245566666665555444
Q ss_pred EEEEEEEEEc--CCCCc---ccEEEEEEeeecCCCc--EEEEc
Q 012356 92 IVLVTGCLTG--KDNVK---KKFTQTFFLAPQDKGG--YFVLN 127 (465)
Q Consensus 92 ~v~V~G~~~~--~~~~~---~~F~q~F~L~~~~~~~--y~v~n 127 (465)
+|...-.+.. .+.+. .+|+++| ...+. + |-|..
T Consensus 88 vv~~~~~~~~~~~g~~~~~~~~~t~vw--~k~~g-~~gWriv~ 127 (134)
T 3fsd_A 88 VVVVRAVTAGVYDGEAFTETLRFTRIW--RRTQG-PAGWKLVA 127 (134)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEE--EEETT-TTEEEEEE
T ss_pred EEEEEEEEEEEeCCcEEEEEEEEEEEE--EECCC-CccceEeE
Confidence 4433333322 23221 2355555 45555 6 88765
No 278
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=83.06 E-value=5.7 Score=33.58 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=57.4
Q ss_pred HHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEEE
Q 012356 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKGVIVL 94 (465)
Q Consensus 18 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d~q~s~~~~i~v~ 94 (465)
+.|+.||..++ .+.+.|..||.++.++.-.... ....|.++|.+.+..+. |.++++.|..+-+. ++.+++.
T Consensus 29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~d~~~g---~~~~Greai~~~~~~~~~~~~d~~~~v~~~~~~---gd~v~~~ 102 (158)
T 4h3u_A 29 EIVTAWAAAWTGTNPNALGTLFAADGTYVDHAIG---ATMTGREQISGWKARTDAMIENVHVTITKAYRA---GDHVTIE 102 (158)
T ss_dssp HHHHHHHHHHHSSCHHHHHTTEEEEEEEEETTTT---EEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEE---TTEEEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccceEeccCCC---ceEecchhhhhhhhhhhccCCccceeEeEEeec---CceEEEE
Confidence 46888999988 7899999999999887643221 14789999999887542 33555665543322 3334433
Q ss_pred --EEEEEEcCCCC-cccEEEEEEee
Q 012356 95 --VTGCLTGKDNV-KKKFTQTFFLA 116 (465)
Q Consensus 95 --V~G~~~~~~~~-~~~F~q~F~L~ 116 (465)
++|.....+.+ ...++..|.|.
T Consensus 103 ~~~~gt~~~tG~~~~~~~~~v~~~~ 127 (158)
T 4h3u_A 103 AVYGGHIKGAPTPFAVPMATLLRTR 127 (158)
T ss_dssp EEEEEEETTSSSCEEEEEEEEEEEE
T ss_pred EEEEEEecCccCcceeeeEEEEEEE
Confidence 33433322222 24466677763
No 279
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=82.73 E-value=3 Score=35.25 Aligned_cols=50 Identities=8% Similarity=0.136 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
.++.|+.||..++ .+.+.|..+|.++..+.... + ....|.++|.+.+..+
T Consensus 22 ~~~lv~~~~~a~~~~D~~~l~~l~a~D~v~~~p~--g--~~~~G~e~i~~~~~~~ 72 (151)
T 3f7x_A 22 ATELVNAYYAAFNAGDMPAFLALLSEDVIHDINQ--G--ERQMGKARFAAFMEKM 72 (151)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECTT--S--CEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCEEEECCC--C--CCcCCHHHHHHHHHHH
Confidence 4678899999887 67899999999998864321 1 2578999999988755
No 280
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=82.38 E-value=5.6 Score=33.83 Aligned_cols=63 Identities=8% Similarity=0.052 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeee
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTAD 82 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d 82 (465)
-...|+.||..++ .+.+.|..||.++..+..... | ...|.++|.+.+..+ .|.+.++.|..+-
T Consensus 36 n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~~p~~-g---~~~G~e~~~~~~~~~~~~~pd~~~~i~~~~ 101 (159)
T 3k0z_A 36 MVHAAQRFYAFWDTGKEELIPQTVTENFFDHTLPK-G---RPQGTEGLKFAAQNFRKIVPNIHCEIEDLL 101 (159)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHEEEEEEESSCCT-T---CCSSHHHHHHHHHHHHTTCCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHcCCCeEEecCCC-C---CCCCHHHHHHHHHHHHHhCCCcEEEEEEEE
Confidence 4678999999988 578999999999877665421 2 467888888877543 3446777776543
No 281
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=81.20 E-value=6.3 Score=32.81 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCCC-cceEEEeeeeeeeeCCCcEE
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNYE-DYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~~-~~~~~i~~~d~q~s~~~~i~ 92 (465)
--...|+.||..++ .+.+.|..||.++..+...+. ....|.++|.+.+..+.-. +++++|..+-+ .++-++
T Consensus 16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~~i~~~~~---~g~~vv 88 (149)
T 2bng_A 16 EAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGF----SRIRGGRRTATLLRRMQGRVGFEVKIHRIGA---DGAAVL 88 (149)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEETTT----EEEECHHHHHHHHHTTTTTCEEEEEEEEEEE---ETTEEE
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEeCCC----CCccCHHHHHHHHHHHHhhcCcEEEEEEEEE---eCCEEE
Confidence 44678899999887 577899999999977663332 2468999999999876421 34555544432 223233
Q ss_pred EEEEEEEEcCCCC-cccEEEEEEe
Q 012356 93 VLVTGCLTGKDNV-KKKFTQTFFL 115 (465)
Q Consensus 93 v~V~G~~~~~~~~-~~~F~q~F~L 115 (465)
+.....+...+.. ...++.+|.+
T Consensus 89 ~~~~~~~~~~G~~~~~~~~~~~~v 112 (149)
T 2bng_A 89 TERTDALIIGPLRVQFWVCGVFEV 112 (149)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EEEEEEEEECCeEEEEEEEEEEEE
Confidence 3322123333211 2445666666
No 282
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=80.32 E-value=5.7 Score=32.81 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCC-CCcccchhhHHHHHHHHhcC
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDS-NGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~-~~~~~~~~g~~~I~~~~~~l 69 (465)
-...|+.||..++ .+.+.|..||.++..+..... .|......|.++|.+.+..+
T Consensus 12 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~~~g~~~~~~G~~~i~~~~~~~ 67 (150)
T 1s5a_A 12 ACETLRKFMAYMLEKDMKSWTELWDENAVFEFPYAPEGSPKRIEGKAAIYDYIKDY 67 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTTCCTTSCSEEESHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhCCCCEEEEeecCCCCCCccccCHHHHHHHHHHh
Confidence 4678899999887 678899999999988876421 23222478999999988765
No 283
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=80.18 E-value=4.9 Score=32.49 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeee
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADA 83 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~ 83 (465)
.+.|+.||+.|+ .+.+.|..||.++..+. + ...|.++|.+.+..+ .|.+++++|..+-+
T Consensus 6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~~~~--~------~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 67 (128)
T 3ehc_A 6 NDIYLAYLDSLNHQAFDELGTFVDDNVEHN--G------RPFGLSGYRDMLVKDFADIPDLRFEAEILVS 67 (128)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGTEEEEEEET--T------BCCHHHHHHHHHHHHHHHCTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCcceEeC--C------CCCCHHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 467888999888 67889999999886552 3 357888888777543 23367777765443
No 284
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=80.14 E-value=9.4 Score=32.10 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHHH-hhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeeee
Q 012356 11 SAQVVGNAFVEQYYH-ILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTAD 82 (465)
Q Consensus 11 ~~~~Vg~~Fv~~YY~-~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d 82 (465)
...+--.+.|+.||. .|+ .+.+.|..||.++......+ ...|.++|.+.+..|- |.+.+++|..+-
T Consensus 24 ~~~~~nk~lV~~f~~~a~~~~D~~~~~~~~a~D~v~h~P~------~~~G~e~~~~~~~~~~~~~pd~~~~i~~ii 93 (148)
T 3g0k_A 24 AEEQANHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQHSSL------AEPSVEALKGFLDRVRAESPDARQTIHRSF 93 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCGGGGGGTEEEEEEECCSS------SCSSHHHHHHHHHHHHHHCCSCEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHhcCcCeEEcCCC------CCCCHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 344566789999999 676 77889999999885544332 2478888887775431 335667766543
No 285
>1sjw_A Nogalonic acid methyl ester cyclase; anthracyclines, nogalamycin, snoal, aldol condensation, LYAS structural genomics; HET: NGV; 1.35A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=79.86 E-value=11 Score=30.74 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCC-cceEEEeeeee
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYE-DYTAEIKTADA 83 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~-~~~~~i~~~d~ 83 (465)
...|++||..++ .+.+.|..||.++..+...... ....|.++|.+.+..+ .|. +.+++|..+-+
T Consensus 5 ~~~v~~~~~a~~~~d~~~~~~~~a~d~~~~~~~~~---~~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 72 (144)
T 1sjw_A 5 TEIVRRMVSAFNTGRTDDVDEYIHPDYLNPATLEH---GIHTGPKAFAQLVGWVRATFSEEARLEEVRIEE 72 (144)
T ss_dssp HHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGGGG---TCCSHHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHHcCcCeEEccCCCC---CCCCCHHHHHHHHHHHHHhCCCCcEEEEEEEEE
Confidence 467888999887 6788999999998765543321 0127999998887654 244 56777766543
No 286
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=79.46 E-value=0.93 Score=38.39 Aligned_cols=39 Identities=0% Similarity=-0.188 Sum_probs=34.5
Q ss_pred CcceEEEEEeCChHHHHHHHHhC--CCcccccceEEeecccc
Q 012356 341 QGYCFGFVAFETPGSVQSALEAS--PILIGDRPADVEAKRAN 380 (465)
Q Consensus 341 ~~~gfaFV~F~~~~~a~~Al~~~--~~~i~g~~i~Ve~~r~~ 380 (465)
..+|+++|+|.+.+.|++||+.+ +..|+| .|.++.+..+
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 57899999999999999999887 788999 9999987654
No 287
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=79.17 E-value=3.6 Score=34.59 Aligned_cols=54 Identities=7% Similarity=0.082 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhc
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILS 68 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~ 68 (465)
--.+.|+.||..|+ .+.+.|..||.++..+...+...-.....|.++|.+.+..
T Consensus 21 ~n~~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~p~~~~~~g~~~G~~~v~~~~~~ 75 (148)
T 3g8z_A 21 NTIDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNHQFSGTHRGMAVVGPMLGK 75 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHcCCCEEEEcCCCCCCCceEcCHHHHHHHHHH
Confidence 34567788888877 6788999999999887766531111136899999987754
No 288
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=78.13 E-value=6.4 Score=31.69 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCC---CCcccchhhHHHHHHHHhcCC--CCcceEEEeee
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDS---NGSMTTVTTMKAINDRILSLN--YEDYTAEIKTA 81 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~---~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~ 81 (465)
.+.|++||..++ .+.+.|..+|.++..+...+. -.......|.++|.+.+..+. |.+.+++|..+
T Consensus 6 ~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~~p~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (132)
T 3ebt_A 6 MQTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMSPYGLGGTKHGHDEVIAFIRHVPTHIAEMRLAPDEF 76 (132)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGGGGTCCEEEEHHHHHHHHHHHGGGTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCCCCcccCCcCcCHHHHHHHHHHHHhhCCceEEEEeEE
Confidence 345778888887 578999999999987665421 000025789999999887653 33445555543
No 289
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=77.69 E-value=6.7 Score=33.13 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeee
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADA 83 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~ 83 (465)
-...|+.||..++ .+.+.|..||.++..+...+ ...|.++|.+.+..+ .|.+.+++|..+-+
T Consensus 6 ~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~~p~------~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 70 (158)
T 2gey_A 6 RKALCLEMVAAWNRWDLSGIIKHWSPDIVHYSED------NEVSSADMVKLMEGGLKAFPDLQLEVKSIMA 70 (158)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHTTEEEEEEEEETT------EEECHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeEEeCCC------CCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence 4567889999877 57789999999997776532 468999988877643 23467778766443
No 290
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=77.17 E-value=24 Score=29.17 Aligned_cols=63 Identities=6% Similarity=0.056 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeee
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADA 83 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~ 83 (465)
-...|+.||..++ .+.+.|..||.++..+.... + ...|.++|.+.+..+ .|.+.+++|..+-+
T Consensus 6 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~~~--~---~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~ 71 (152)
T 2gex_A 6 NKERCLEMVAAWNRWDVSGVVAHWAPDVVHYDDE--D---KPVSAEEVVRRMNSAVEAFPDLRLDVRSIVG 71 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECTT--S---CEECHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEeCCC--C---CCCCHHHHHHHHHHHHHhCCCcEEEEEEEEE
Confidence 4567888898887 56789999999997766531 1 467888888877543 13366777766433
No 291
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=76.66 E-value=8.6 Score=30.74 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeee
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTA 81 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~ 81 (465)
--...|+.||..++ .+.+.|..+|.++..+..... .....|.++|.+.+..+- +.+.++.|..+
T Consensus 8 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~p~~---~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~ 74 (131)
T 1oh0_A 8 EVQGLMARYIELVDVGDIEAIVQMYADDATVEDPFG---QPPIHGREQIAAFYRQGLGGGKVRACLTGPV 74 (131)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEESSTT---SCCEEHHHHHHHHHHHHHSSSCCEEEESSCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEEcCCC---CCCcccHHHHHHHHHHHhhccceeEeecceE
Confidence 34678899999998 578999999999988776432 125789999999886542 22334444433
No 292
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=76.49 E-value=17 Score=30.78 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCC-CCcccchhhHHHHHHHHhcCC
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDS-NGSMTTVTTMKAINDRILSLN 70 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~-~~~~~~~~g~~~I~~~~~~l~ 70 (465)
.+.|+.||..|+ .+.+.|..+|.++..+..... .|......|.++|.+.+..+.
T Consensus 26 ~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~~~g~~~~~~G~~ai~~~~~~~~ 81 (163)
T 1z1s_A 26 KEILVHSLRLLENGDARGWCDLFHPEGVLEFPYAPPGWKTRFEGRETIWAHMRLFP 81 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEECSSCCTTSCCEEESHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEECcCCCCCCCcccCCHHHHHHHHHHHH
Confidence 456788999888 577899999999988876532 122234789999999987653
No 293
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=76.26 E-value=5.8 Score=33.34 Aligned_cols=68 Identities=9% Similarity=0.083 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CC-cceEEEeee
Q 012356 14 VVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YE-DYTAEIKTA 81 (465)
Q Consensus 14 ~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~-~~~~~i~~~ 81 (465)
+-....|++||..++ .+.+.|..||.++..+...+.........|.++|.+.+..+. +. +.+++|..+
T Consensus 29 ~~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~~~~~~~~~g~~~G~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (156)
T 1tuh_A 29 EQNAETVRRGYAAFNSGDMKTLTELFDENASWHTPGRSRIAGDHKGREAIFAQFGRYGGETGGTFKAVLLHV 100 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEECSSSTTCEEEESHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred chHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEEccCCCCccceEcCHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 345678999999888 678899999999977765543110113689999988876542 11 345566544
No 294
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=75.80 E-value=5.2 Score=33.21 Aligned_cols=64 Identities=6% Similarity=-0.044 Sum_probs=45.2
Q ss_pred HHHHHHHHHH-hhc-cC--cchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeee
Q 012356 16 GNAFVEQYYH-ILH-QS--PGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADA 83 (465)
Q Consensus 16 g~~Fv~~YY~-~l~-~~--p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~ 83 (465)
-.+.|+.||. .++ .+ .+.|..||.++..+..... ....|.++|.+.+..+ .|.+.+++|..+-+
T Consensus 11 n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~~~~~----~~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 80 (146)
T 3kkg_A 11 NVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSIFHSN----QAVEGIEQAIAFNAVLFEGFPRLEVVVENVTV 80 (146)
T ss_dssp HHHHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEEETTS----CCEESHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEecCCC----CCCCCHHHHHHHHHHHHHhCCCceeEEEEEEE
Confidence 3578899999 676 45 6899999999987765432 1468888888877543 23467787766543
No 295
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=74.78 E-value=16 Score=30.01 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=44.0
Q ss_pred HHHHHHHHH-hhc-cCcchhcccccCCce-eeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeee
Q 012356 17 NAFVEQYYH-ILH-QSPGLVHRFYQDSSL-LSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADA 83 (465)
Q Consensus 17 ~~Fv~~YY~-~l~-~~p~~l~~fY~~~s~-~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~ 83 (465)
.+.|+.||+ .++ .+.+.|..||.++.. ....+. .......|.++|.+.+..+ .|.+++++|..+-+
T Consensus 9 ~~~v~~~~~~~~~~~d~~~~~~~~a~d~~~~~~p~~-~~~g~~~G~~~~~~~~~~~~~~~pd~~~~i~~~~~ 79 (146)
T 3f9s_A 9 KEILTQFTREVWSEGNIEASDKYIAPKYTVLHDPGD-PWEGRELDVAGYKERVKTLRAAFPDQCFDIQGLFA 79 (146)
T ss_dssp HHHHHHHHHHHTTTCCGGGHHHHEEEEEEEEECTTC-TTTTCEECHHHHHHHHHHHHHHSTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeeeccCCCC-CCCCCcCCHHHHHHHHHHHHhhCCCcEEEEEEEEE
Confidence 467888886 665 688999999999987 444331 0011467888888877643 24477788776543
No 296
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=73.77 E-value=22 Score=29.61 Aligned_cols=65 Identities=8% Similarity=-0.014 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCC-cceEEEeeeee
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYE-DYTAEIKTADA 83 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~-~~~~~i~~~d~ 83 (465)
-...|+.||..++ .+.+.|..||.++..+..... + ....|.++|.+.+..+ .|. +++++|..+-+
T Consensus 13 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~~p~~-~--~~~~G~~~~~~~~~~~~~~~p~d~~~~i~~~~~ 81 (153)
T 2f99_A 13 QIAAVRRMVEAYNTGKTDDVADYIHPEYMNPGTLE-F--TSLRGPELFAINVAWVKKTFSEEARLEEVGIEE 81 (153)
T ss_dssp HHHHHHHHHHHHHHCCCTTGGGTEEEEEECGGGTT-T--CCCCHHHHHHHHHHHHHHHHCTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCeEEecCCC-C--CCCCCHHHHHHHHHHHHHHCCCCcEEEEEEEEE
Confidence 3567888999887 677899999999866554432 1 1247999998887654 244 56777765443
No 297
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=73.68 E-value=3.8 Score=33.35 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
-.+.|+.||..++ .+.+.|..+|.++..+...+.........|.++|.+.+..+
T Consensus 7 ~~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~p~~~p~~g~~~G~~~i~~~~~~~ 61 (135)
T 3fgy_A 7 NVQIVKDFFAAMGRGDKKGLLAVSAEDIEWIIPGEWPLAGTHRGHAALAALLQKA 61 (135)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEEECSSSTTCEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhcCCCeEEEEcCCCccceEEeCHHHHHHHHHHH
Confidence 3567888888887 57899999999998776655211112468999998888654
No 298
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=71.89 E-value=40 Score=27.61 Aligned_cols=66 Identities=8% Similarity=-0.047 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC---CCCcceEEEeeeeeee
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL---NYEDYTAEIKTADAQD 85 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l---~~~~~~~~i~~~d~q~ 85 (465)
--..|+..|...|+ .+.+.+..+|.++..+...+ | ...|.++|.+.+... ....+.|.|.++....
T Consensus 11 ~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~~--g---~~~g~~~i~~~~~~~~~~~~~~t~H~i~n~~i~~ 80 (144)
T 2rgq_A 11 EIMELAARFEMSLDKEDVENYLATFASDGALQGFW--G---IAKGKEELRQGFYAMLDTFARGKRHCSSNAIIQG 80 (144)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT--E---EEESHHHHHHHHHHHHHHTTTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcCC--C---CCCCHHHHHHHHHHHHhhCCCCcEEecCCeEEEE
Confidence 45689999999999 68889999999998776542 2 247888888887532 1123677787776643
No 299
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=71.62 E-value=31 Score=28.46 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=53.3
Q ss_pred HHHHHHHHhhccCc--chhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeeeeeeeeCCCcEEE
Q 012356 18 AFVEQYYHILHQSP--GLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTADAQDSYEKGVIV 93 (465)
Q Consensus 18 ~Fv~~YY~~l~~~p--~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~d~q~s~~~~i~v 93 (465)
+-|+.||..+.+.. +.|..||.++.++..+...+ .....|.++|.+.+..+. +..|.++|..+- ..++-+++
T Consensus 24 evv~r~~e~~~~gd~~~~l~~lya~D~v~~dp~~~~-~~~~~G~eai~~~~~~~~~~~~~~~~~i~~~~---v~gd~v~v 99 (136)
T 3hk4_A 24 EIAKDFTELLKQGDNAGAAEKYNADDIASYEAMEGP-MAVSHGKEALRQKSQWWQENHEVHGGSVEGPY---VNGDQFAL 99 (136)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHEEEEEEEECSSCST-TSEEESHHHHHHHHHHHHHTEEEEEEEEEEEE---EETTEEEE
T ss_pred HHHHHHHHHHHcCCcHHHHHHHCCCCEEEEcCCCCC-ccccCCHHHHHHHHHHHHhcCCeeeeeecceE---EcCCEEEE
Confidence 34566677777554 46899999999887653211 114689999999886442 223334443322 22344555
Q ss_pred EEEEEEEcC-CCCcccEEEEEEe
Q 012356 94 LVTGCLTGK-DNVKKKFTQTFFL 115 (465)
Q Consensus 94 ~V~G~~~~~-~~~~~~F~q~F~L 115 (465)
..+...+.. ......+..+-++
T Consensus 100 ~~~~~gth~~tG~~i~~~~i~v~ 122 (136)
T 3hk4_A 100 RFKFDVTPKATGERVTMDEVGLY 122 (136)
T ss_dssp EEEEEEEETTTCCCEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEEEEE
Confidence 555444544 3344444444444
No 300
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=70.83 E-value=24 Score=29.28 Aligned_cols=67 Identities=9% Similarity=0.059 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC--CCCcceEEEeeeeeeeeC
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL--NYEDYTAEIKTADAQDSY 87 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l--~~~~~~~~i~~~d~q~s~ 87 (465)
..++..|...|+ .+.+.|..+|.++..+..... ....|.++|.+.+..+ +|..+.|.|.++......
T Consensus 14 ~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~~----~~~~G~~~i~~~~~~~~~~~~~~~H~~~n~~I~~~g 83 (150)
T 3ef8_A 14 ERMMFDYSYHLDMNHPEELAALFVEDCEVSYAPN----FGATGRDAYKKTLEGIGTFFRGTSHHNSNICIDFVS 83 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEETT----EEEESHHHHHHHTTTHHHHEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCHHHHHhhccCceEEEccCC----CCCCCHHHHHHHHHHhhcccCceEEecCCEEEEEcC
Confidence 567888999988 788999999999988765321 1367999999988664 233456667665554433
No 301
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=70.73 E-value=32 Score=27.67 Aligned_cols=54 Identities=6% Similarity=0.030 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCC----cccchhhHHHHHHHHhcC
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNG----SMTTVTTMKAINDRILSL 69 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~----~~~~~~g~~~I~~~~~~l 69 (465)
-...|+.||..++ .+.+.|..+|.++..+....... ......|.++|.+.+..+
T Consensus 9 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~~p~~~~~~~~~g~~~~G~~ai~~~~~~~ 67 (139)
T 2a15_A 9 ALIASQSSWRCVQAHDREGWLALMADDVVIEDPIGKSVTNPDGSGIKGKEAVGAFFDTH 67 (139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTEEEEEEEESSSSSBTTBTTSSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcCCCEEEECCCCCCccCCCCceeecHHHHHHHHHHh
Confidence 3457888999988 67889999999998876432100 001268999999998754
No 302
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=68.04 E-value=8.9 Score=39.58 Aligned_cols=54 Identities=24% Similarity=0.373 Sum_probs=42.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhC
Q 012356 302 GCSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEAS 363 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~ 363 (465)
...++|+ +|..+...+|.++|+.||.+. |..-.+ ..+||.|.+.+.+..++..+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---V~widd----t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---ISWIDD----TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---EEECSS----SEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---EEEEcC----CeEEEEECCHHHHHHHHHHH
Confidence 3567776 888899999999999999654 433333 35999999999999998876
No 303
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=66.13 E-value=23 Score=27.94 Aligned_cols=91 Identities=10% Similarity=0.021 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC-CCCcceEEEeeeeeeeeCCCcEEEE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL-NYEDYTAEIKTADAQDSYEKGVIVL 94 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l-~~~~~~~~i~~~d~q~s~~~~i~v~ 94 (465)
...|+.||..++ .+.+.|..+|.++..+.... + .....|.++|.+.+..+ .-.+.+++|..+- .. ++-| .
T Consensus 6 ~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~~~~--g-~~~~~G~~ai~~~~~~~~~~~~~~~~~~~~~--~~-gd~v--~ 77 (123)
T 2k54_A 6 ELPVQKQLEAYNARDIDAFMAWWADDCQYYAFP--A-TLLAGNAAEIRVRHIERFKEPDLYGELLTRV--IV-GNVV--I 77 (123)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEEEEEEETT--T-EEEEESHHHHHHHHHHHTTCTTCEEEEEEEE--EE-TTEE--E
T ss_pred HHHHHHHHHHHHhcCHHHHHhhcCCceEEEcCC--C-CcccCCHHHHHHHHHHHcCCCCcEEEEEEEE--EE-CCEE--E
Confidence 467889999998 57789999999998664321 1 11368999999988643 2124455554433 22 3323 3
Q ss_pred EEEEEEcC--CC-CcccEEEEEEe
Q 012356 95 VTGCLTGK--DN-VKKKFTQTFFL 115 (465)
Q Consensus 95 V~G~~~~~--~~-~~~~F~q~F~L 115 (465)
+...++.. +. ....++.+|.|
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~vf~v 101 (123)
T 2k54_A 78 DHETVTRNFPEGKGEVDVACIYEV 101 (123)
T ss_dssp EEEEEECCBTTBCCEEEEEEEEEE
T ss_pred EEEEEEeECCCCceEEEEEEEEEE
Confidence 34444432 11 13557777777
No 304
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=65.08 E-value=12 Score=35.39 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 16 GNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 16 g~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
-..+|+.||..|+ .+.+.|..+|.++.++..+-. .....|.++|...+..+
T Consensus 8 ~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~~P~~---~~~~~Gr~ai~~~~~~~ 59 (283)
T 3rga_A 8 RKEVALEYCRRVNAGELEGVLQLFAPDARLVDPLG---TEPVVGRAALAARLAPA 59 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEECSSS---SCCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCcCcHHHHHHHHHHH
Confidence 5678999999988 789999999999999886421 11478999999998754
No 305
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=64.34 E-value=34 Score=28.52 Aligned_cols=108 Identities=6% Similarity=-0.012 Sum_probs=65.5
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCcee-ee--cCCCCcccchhhHHHHHHHHhcCCCCcceEEEeeeeeeeeCCCcEE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLL-SR--PDSNGSMTTVTTMKAINDRILSLNYEDYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~-~~--~~~~~~~~~~~g~~~I~~~~~~l~~~~~~~~i~~~d~q~s~~~~i~ 92 (465)
..++++|..-++ .+-+.+.++|.++-++ -+ .+. .+.|.+.+...+.........+.+.....+...++..+
T Consensus 15 ~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~Fd~~~~g~-----~~~g~~~~r~~f~~~~~~~~~~~~~~~~V~~~g~d~Av 89 (143)
T 2f86_B 15 VRVTQTLLDAISCKDFETYTRLCDTSMTCFEPEALGN-----LIEGIEFHRFYFDGNRKNQVHTTMLNPNVHIIGEDAAC 89 (143)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHEEEEEEEECGGGTTC-----CEETTHHHHTTSSSCSCCSCEEEEEEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHHccCHHHHHHhcCCCEEEEccCcCCc-----cccCHHHHHHHHhcccCCcceeEEEcceEEEeCCCEEE
Confidence 467788888776 8899999999987654 33 232 46788887754333222345677777777766534333
Q ss_pred EE---EEEEEEcCCCC-cccEEEEEEeeecCCCcEEEEcceE
Q 012356 93 VL---VTGCLTGKDNV-KKKFTQTFFLAPQDKGGYFVLNDVF 130 (465)
Q Consensus 93 v~---V~G~~~~~~~~-~~~F~q~F~L~~~~~~~y~v~nDif 130 (465)
+. .++.+..++.+ ...+--|.++..+++ +|.|...=.
T Consensus 90 ~~y~~~~~~~~~~G~~~~~~~r~T~V~~k~~g-~WkivH~H~ 130 (143)
T 2f86_B 90 VAYVKLTQFLDRNGEAHTRQSQESRVWSKKQG-RWVCVHVHR 130 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEEEETT-EEEEEEEEE
T ss_pred EEEEeeeeeccCCCCeeeEEEEEEEEEEEeCC-cEEEEEEeE
Confidence 22 22322223322 344666777777775 899887544
No 306
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=60.46 E-value=4.1 Score=33.16 Aligned_cols=96 Identities=14% Similarity=0.221 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHH-HHhcCC--CCcceEEEeeeeeeeeCCCcEE
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAIND-RILSLN--YEDYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~-~~~~l~--~~~~~~~i~~~d~q~s~~~~i~ 92 (465)
.+.|+.||..|+ .+.+.|..+|.++..+...+.........|.++|.+ .+..|. |.+.++.|..+. ...++. .
T Consensus 7 ~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~~~~~p~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gd-~ 83 (134)
T 3grd_A 7 LEIIRSTYEGSASSNAKHLAEALSEKVEWTEAEGFPYGGTYIGVEAIMENVFSRLGSEWNDYKASVNMYH--EVSGKD-V 83 (134)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHEEEEEEEEECTTSTTCEEEESHHHHHHHTHHHHHHHEEEEEEEEEEEE--EBTTSS-E
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCCCeEEEecCCcccCcEEeCHHHHHHHHHHHHHhhccccccchhhee--eecCCC-E
Confidence 456788888877 567899999999987765542111124689999875 444332 334455555442 222332 2
Q ss_pred EEEEEEEEc----CCCC-cccEEEEEEe
Q 012356 93 VLVTGCLTG----KDNV-KKKFTQTFFL 115 (465)
Q Consensus 93 v~V~G~~~~----~~~~-~~~F~q~F~L 115 (465)
|.|.|.+.. .+.. ...|+..|.+
T Consensus 84 v~v~~~~~~~~~~tG~~~~~~~~~v~~~ 111 (134)
T 3grd_A 84 IIAEGMYSGVYKDTGKSFEAEFVHVWQL 111 (134)
T ss_dssp EEEEEEEEEEETTTCCEEEEEEEEEEEE
T ss_pred EEEEEEEeeEECCCCCEeeeeEEEEEEE
Confidence 344444432 2222 2456777777
No 307
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=59.19 E-value=17 Score=28.98 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC
Q 012356 17 NAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (465)
Q Consensus 17 ~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~ 70 (465)
+..|+.||..++ .+.+.|..++.++..+...+. ...|.+++...+..+-
T Consensus 9 ~~~v~~f~~A~~~gD~~~l~~lla~Dvv~~~~~g-----~~~G~~~v~~~~~~~~ 58 (114)
T 3f40_A 9 RDLVLEFIHALNTENFPAAKKRLNENFTFNGPMG-----HREGSERYMNDMEKMK 58 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEEETTE-----EEESHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC-----cccCHHHHHHHHHHHH
Confidence 345666777777 788999999999977765432 4689999999887654
No 308
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=54.23 E-value=21 Score=29.81 Aligned_cols=48 Identities=4% Similarity=0.059 Sum_probs=36.2
Q ss_pred HHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 18 AFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 18 ~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
+.|+.||..|+ .+.+.|..+|.++..+... . + ....|.++|.+.+..+
T Consensus 22 ~~v~~~~~a~n~~D~~~l~~l~a~D~v~~~~-~-~--~~~~G~e~i~~~~~~~ 70 (150)
T 3f8h_A 22 DTIARYFDAFNAGDTDGMLACLSEDVAHHVN-E-G--NIRVGKEKFAAFCAHM 70 (150)
T ss_dssp CHHHHHHHHHHHTCHHHHHTTEEEEEEEEEE-T-T--EEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHcCCCeEEeCC-C-C--cceeCHHHHHHHHHHH
Confidence 46888999988 7889999999999873322 1 1 1478999999988743
No 309
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=51.48 E-value=11 Score=31.40 Aligned_cols=52 Identities=6% Similarity=0.124 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
....++..||..++ .+.+.|..+|.++.++.-.-. ...+.|.++|...|..+
T Consensus 10 ~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~~v~~~~~~~ 62 (143)
T 3mso_A 10 NAAATLAEWHGLIARRDLSGLPRLLHPDAVFRSPMA---HKPYAGAPVVSMILNTV 62 (143)
T ss_dssp HHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEECCCC---CCCccCHHHHHHHHHHH
Confidence 35678899999887 678999999999998875321 12578999999988653
No 310
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=50.76 E-value=14 Score=27.09 Aligned_cols=69 Identities=7% Similarity=0.111 Sum_probs=39.6
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhccCCeeEe---EEEEccCCCcceEEEEEeCChHHHHHHHHhC-CCcccccceEEeecc
Q 012356 304 SIYVR-NLAFTTTSTELEEAFKIFGPIKKN---GVQVRSNKQGYCFGFVAFETPGSVQSALEAS-PILIGDRPADVEAKR 378 (465)
Q Consensus 304 ~lfV~-nLp~~~te~~L~~~F~~~G~i~~~---~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~-~~~i~g~~i~Ve~~r 378 (465)
+|||. +--..++..+|..++...+.|..- .|.+ ...|.||+-.. ..+..+++.+ ...+.|+.++|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i-----~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITI-----MDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEE-----CSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEE-----eCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45663 123346777888888765554321 1222 23478998875 4567788888 888999999998764
No 311
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=50.20 E-value=99 Score=28.77 Aligned_cols=56 Identities=9% Similarity=0.041 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC
Q 012356 12 AQVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN 70 (465)
Q Consensus 12 ~~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~ 70 (465)
..+--..+|+.||..|+ .+.+.|..+|.++..+...-. .....|.++|.+.+..+-
T Consensus 136 ~~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~~P~~---~~~~~G~~ai~~~~~~~~ 192 (283)
T 3rga_A 136 DEERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDPVG---SWTRTGLEALRAHATMAV 192 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEESSTT---SCEEESHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEECCCC---CCcccCHHHHHHHHHHhh
Confidence 45566889999999998 789999999999999876421 125789999999987543
No 312
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=45.40 E-value=4.4 Score=39.87 Aligned_cols=14 Identities=36% Similarity=0.283 Sum_probs=10.1
Q ss_pred CCCHHHHHHHHhcc
Q 012356 313 TTTSTELEEAFKIF 326 (465)
Q Consensus 313 ~~te~~L~~~F~~~ 326 (465)
++++++|+++...+
T Consensus 228 ~vt~~~l~~i~~~i 241 (358)
T 2pk2_A 228 TVTLELLDELTHEF 241 (358)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 56888888876543
No 313
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=43.24 E-value=5 Score=39.48 Aligned_cols=10 Identities=50% Similarity=0.823 Sum_probs=5.6
Q ss_pred hhcccccCCc
Q 012356 33 LVHRFYQDSS 42 (465)
Q Consensus 33 ~l~~fY~~~s 42 (465)
.++|||...+
T Consensus 65 ~~dRFl~~~s 74 (358)
T 2pk2_A 65 YMHRFYMIQS 74 (358)
T ss_dssp HHHHHTTTSC
T ss_pred HHHHHHhcCC
Confidence 3456666554
No 314
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=42.54 E-value=1.4e+02 Score=24.44 Aligned_cols=114 Identities=9% Similarity=0.081 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCCC-CcceEEEeeeeeeeeCCCcEE
Q 012356 15 VGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLNY-EDYTAEIKTADAQDSYEKGVI 92 (465)
Q Consensus 15 Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~~-~~~~~~i~~~d~q~s~~~~i~ 92 (465)
+..+.+.-==..|+ .+++.+..+|.++.++--.-. ...+.|.++|..++..+.- ..|.++|.....|-..+-+++
T Consensus 15 ~~~~i~~~~~~~L~~gD~~~~~~lyapDvt~fDp~~---~~~~~G~~a~r~yf~~~~~~~~~~~ei~~p~V~v~gD~A~~ 91 (134)
T 3ke7_A 15 IPEMIISLEKEALASTDPMAFVELSDTDVIYFDPSL---ETKIEGLEQLRTYYKGMQLPPADHFDMIRPVVQVAQNIAVL 91 (134)
T ss_dssp HHHHHHHHHHHHHHCSCTTHHHHHEEEEEEEECTTC---SSCEESHHHHHHHHHHHCCCCCSEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHhHHHHhCCCHHHHHHhcCCCEEEEcCCC---ccccCCHHHHHHHHHhcccCCcceEEEeCCeEEEeCceEEE
Confidence 33444433334444 889999999998876532211 1247899999999876431 336788888777774443333
Q ss_pred EEEEEEEEcCCCCcccEEEEEEeeecCCCcEEEEcceEeee
Q 012356 93 VLVTGCLTGKDNVKKKFTQTFFLAPQDKGGYFVLNDVFRFV 133 (465)
Q Consensus 93 v~V~G~~~~~~~~~~~F~q~F~L~~~~~~~y~v~nDifr~~ 133 (465)
-.+.- ....+ .....--|+++....+|+|.|.+.=..++
T Consensus 92 ~y~l~-~~~~~-~~~~~r~T~V~~r~~dG~W~ivH~H~S~~ 130 (134)
T 3ke7_A 92 TFNLD-SYLSD-KVIKWNCTEVYRRNPDNQWKIIQTHWSYV 130 (134)
T ss_dssp EEEEE-EEETT-EEEEEEEEEEEEECTTSBEEEEEEEEEES
T ss_pred EEEEE-EeeCC-CcEEEEEEEEEEEcCCCcEEEEEEeeccc
Confidence 21111 11122 24556778888888345999988655443
No 315
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=42.25 E-value=64 Score=27.81 Aligned_cols=73 Identities=8% Similarity=0.074 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhhc-cCcchhcccccCCceeeec---C-CCCcccchhhHHHHHHHHhcC-C----CCcceEEEeeee
Q 012356 13 QVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRP---D-SNGSMTTVTTMKAINDRILSL-N----YEDYTAEIKTAD 82 (465)
Q Consensus 13 ~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~---~-~~~~~~~~~g~~~I~~~~~~l-~----~~~~~~~i~~~d 82 (465)
.+--..++..|...|+ .+.+.|..+|.++..+.+. | ..+......|.++|.+.+... . |..+.+.|.++.
T Consensus 25 ~~~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~g~~~~~~Gr~aI~~~~~~~~~~~~~~~~t~H~~~n~~ 104 (179)
T 3ejv_A 25 ETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGASRSISRLEGRDAIRVAVRQMMAPHGYRAWSQNVVNAPI 104 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCCEEEEEEESHHHHHHHHHHSSCCCCTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcCCCcceecCHHHHHHHHHHhhcccccccceEEEcCCCE
Confidence 3444678888988888 7889999999999887653 2 112223578999999998653 2 334566676655
Q ss_pred eee
Q 012356 83 AQD 85 (465)
Q Consensus 83 ~q~ 85 (465)
..-
T Consensus 105 I~v 107 (179)
T 3ejv_A 105 IVI 107 (179)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 316
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=40.35 E-value=19 Score=30.76 Aligned_cols=67 Identities=9% Similarity=0.028 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcCC--CCcceEEEeee
Q 012356 13 QVVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSLN--YEDYTAEIKTA 81 (465)
Q Consensus 13 ~~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l~--~~~~~~~i~~~ 81 (465)
.+.-...|+.||..++ .+.+.|..||.++..+..+..- -.....|.++|.+.+..+. | +.++.|..+
T Consensus 9 ~~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~p~~~-p~~~~~Greai~~~f~~~~~~~-d~~~~~e~i 78 (156)
T 3g16_A 9 RAAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYFPAGM-YGGAFRGAAQIAHRWRTAVETL-GSYWTIDAL 78 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEECBTTS-TTSCEESHHHHHHHHHHHHHHH-CEEEEEEEE
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEecCCCC-CCCCccCHHHHHHHHHHHHhhc-CceEEEEEE
Confidence 5678889999999988 6788999999999888765310 0124689999999886533 2 334555443
No 317
>3u5c_h Suppressor protein STM1; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_h
Probab=40.25 E-value=5.9 Score=37.19 Aligned_cols=6 Identities=17% Similarity=0.512 Sum_probs=0.4
Q ss_pred eEeeec
Q 012356 129 VFRFVE 134 (465)
Q Consensus 129 ifr~~~ 134 (465)
.|-||.
T Consensus 4 ~f~lLG 9 (273)
T 3u5c_h 4 PFDLLX 9 (273)
T ss_dssp -----C
T ss_pred HHHHHh
Confidence 344444
No 318
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=37.77 E-value=6.9 Score=31.27 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=0.0
Q ss_pred CCEEEEcCCCCCCCHHH
Q 012356 302 GCSIYVRNLAFTTTSTE 318 (465)
Q Consensus 302 ~~~lfV~nLp~~~te~~ 318 (465)
.++|||+|||+++|++.
T Consensus 97 ~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 97 FTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -----------------
T ss_pred CCceEeCCCCCCccccc
Confidence 46799999999998764
No 319
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=37.18 E-value=28 Score=29.29 Aligned_cols=53 Identities=6% Similarity=0.100 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHhcC
Q 012356 14 VVGNAFVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRILSL 69 (465)
Q Consensus 14 ~Vg~~Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~~l 69 (465)
.....+++.|+..+. .+.+.|..+|.++.++.-.-. ...+.|.+.|...|..+
T Consensus 20 ~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~P~~---~~~~~G~~av~~~~~~~ 73 (148)
T 3f8x_A 20 AAVQSGLQEWHRIIAEADWERLPDLLAEDVVFSNPST---FDPYHGKGPLMVILPAV 73 (148)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEECSSC---SSCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEECCCC---CCCcCCHHHHHHHHHHH
Confidence 667889999999988 678999999999988875321 12578999999988643
No 320
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Probab=35.57 E-value=48 Score=32.72 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHHHHHH---------HHHhhccCcchhcccccCCceeee
Q 012356 14 VVGNAFVEQ---------YYHILHQSPGLVHRFYQDSSLLSR 46 (465)
Q Consensus 14 ~Vg~~Fv~~---------YY~~l~~~p~~l~~fY~~~s~~~~ 46 (465)
-=|++|++. |...|-.+++.|.+||.+.++|..
T Consensus 176 GrgRAWiRlaLne~~L~~yL~~ll~~~~~l~~~Y~~~A~L~~ 217 (384)
T 3cwz_B 176 GKARAWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRC 217 (384)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTCHHHHHHHBCTTSTTTC
T ss_pred cchhHHHHHHHhcchHHHHHHHHHhCchhhhhhcccchhhcC
Confidence 357788775 999999999999999999888864
No 321
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=32.58 E-value=10 Score=34.53 Aligned_cols=12 Identities=8% Similarity=-0.139 Sum_probs=6.7
Q ss_pred EEEEeCChHHHH
Q 012356 346 GFVAFETPGSVQ 357 (465)
Q Consensus 346 aFV~F~~~~~a~ 357 (465)
..|.|.......
T Consensus 142 l~V~~a~~~~~~ 153 (229)
T 3q2s_C 142 PVVTPVNKQFLS 153 (229)
T ss_dssp CEEEECCHHHHH
T ss_pred eEEEECCCCccc
Confidence 456676655443
No 322
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=29.67 E-value=69 Score=22.46 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=43.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeCChHHHHHHHHhCCCc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFETPGSVQSALEASPIL 366 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~~~~~a~~Al~~~~~~ 366 (465)
.++.|.++.-.--...|++.+.. ..|..+.|.+. .+-+.|+|.+.+.+.++|+..|..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~Gy~ 64 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAAGYQ 64 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHcCCc
Confidence 57888888777777889999998 77887555432 245778888777888888877654
No 323
>4giw_A RUN and SH3 domain-containing protein 1; NGF-TRKA signaling pathway, NF-KB pathway, signaling protein; 2.00A {Homo sapiens}
Probab=28.56 E-value=17 Score=32.46 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=35.3
Q ss_pred HHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHH---HhcCCCC-cceEEEe
Q 012356 21 EQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDR---ILSLNYE-DYTAEIK 79 (465)
Q Consensus 21 ~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~---~~~l~~~-~~~~~i~ 79 (465)
..|...|..+++.|.+||.+.|.|.-... + .-...+.|... |..++|+ +..++|+
T Consensus 134 ~~~l~~l~~~~~~l~~~Y~~~a~lr~s~~-~---~~~l~~~l~~~L~~L~~l~F~Ldl~~e~~ 192 (198)
T 4giw_A 134 ELWFSSLQEDAGLLSLMYMPTGFFSLARG-G---CPSLSTELLLLLQPLSVLTFHLDLLFELE 192 (198)
T ss_dssp HHHHHHHHTCHHHHHHHBCTTSHHHHTSS-B---TTBHHHHHHHHHGGGGGSCCBCCTTCC--
T ss_pred HHHHHHHHhChHHHHHHcCCchHhhcccc-c---ChHHHHhhhcccccccccceecchhHhhh
Confidence 46899999999999999999998852111 0 12455555555 5667776 3334443
No 324
>3lyg_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE GOL; 1.61A {Colwellia psychrerythraea}
Probab=26.93 E-value=50 Score=26.61 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=38.3
Q ss_pred HHHHHHHhhc-cCcchhcccccCCceeeecCCCCcccchhhHHHHHH----HHhcCC
Q 012356 19 FVEQYYHILH-QSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAIND----RILSLN 70 (465)
Q Consensus 19 Fv~~YY~~l~-~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~----~~~~l~ 70 (465)
-|+.-.+.|. .+-+.|...|.+++.|.|+++.+ ...|.++|.. ++..||
T Consensus 7 iVqrlW~al~AgD~D~l~adyaeDaV~i~P~sa~---vl~GR~~~r~a~~~L~~~lP 60 (120)
T 3lyg_A 7 IVQRGWEALGAGDFDTLVTDYVEKMIFIMPGQAD---VLKGRQAFRSALDNLGEILP 60 (120)
T ss_dssp HHHHHHHHHHHTCHHHHGGGEEEEEEEECSSTTC---EEESHHHHHHHHTTHHHHSC
T ss_pred HHHHHHHHHhcCCHHHHHHhcccCeEEEccCccc---eeecHHHHHHHHHHHHhhCC
Confidence 4555566666 77889999999999999997744 5789999999 556666
No 325
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=25.85 E-value=21 Score=29.95 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=5.9
Q ss_pred ChHHHHHHHHhC
Q 012356 352 TPGSVQSALEAS 363 (465)
Q Consensus 352 ~~~~a~~Al~~~ 363 (465)
+.+++...+..+
T Consensus 52 t~~~l~~~F~~~ 63 (156)
T 1h2v_Z 52 TEEQIYELFSKS 63 (156)
T ss_dssp CHHHHHHHHGGG
T ss_pred CHHHHHHHHHhc
Confidence 345555555444
No 326
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=25.45 E-value=2.1e+02 Score=24.72 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=36.3
Q ss_pred EEEEcCCCC---------CCCHHHHHHHH--hccCCeeEeEEEEccCCCcceEEEEEeCC-hHHHHHHHHh
Q 012356 304 SIYVRNLAF---------TTTSTELEEAF--KIFGPIKKNGVQVRSNKQGYCFGFVAFET-PGSVQSALEA 362 (465)
Q Consensus 304 ~lfV~nLp~---------~~te~~L~~~F--~~~G~i~~~~v~~~~~~~~~gfaFV~F~~-~~~a~~Al~~ 362 (465)
.+.|-|++. ..+..+|++.| +.|.+++. ..... .....|++.|.|.. -.....|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv-~~l~~-~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRV-RPLWN-YLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEE-EEEEC-SSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCcee-Eeccc-CCCCceeEEEEecCChHHHHHHHHH
Confidence 344556665 13457899977 89988874 22222 22467899999995 4555566554
No 327
>2dwk_A Protein RUFY3; RUN domain, effector, RAP2, bundle, protein binding, structural genomics, NPPSFA; 2.00A {Mus musculus} PDB: 2dwg_A 2cxf_A 2cxl_A
Probab=24.56 E-value=11 Score=33.08 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=35.8
Q ss_pred HHHHHhhccCcchhcccccCCceeeecCCCCcccchhhHHHHHHHHh---cCCCCcceEEEeeeeeee
Q 012356 21 EQYYHILHQSPGLVHRFYQDSSLLSRPDSNGSMTTVTTMKAINDRIL---SLNYEDYTAEIKTADAQD 85 (465)
Q Consensus 21 ~~YY~~l~~~p~~l~~fY~~~s~~~~~~~~~~~~~~~g~~~I~~~~~---~l~~~~~~~~i~~~d~q~ 85 (465)
..|.+.|..+++.|.+||.+.|.|.-. . ...|...|. .+.|. +.++-..+|.|+
T Consensus 120 ~~~l~~l~~~~~~l~~~Y~~~All~~~-e---------~~~l~~~L~gL~~v~F~-l~~~~~~LD~~~ 176 (180)
T 2dwk_A 120 SEYMKALINKKELLSEFYEVNALMMEE-E---------GAIIAGLLVGLNVIDAN-FCMKGEDLDSQV 176 (180)
T ss_dssp HHHHHHHHTCHHHHTTTBCTTSGGGSH-H---------HHHHHHHGGGGGGCCBC-SSCCHHHHCCCC
T ss_pred HHHHHHHHhChHHHHhhCCCCccccCc-c---------HHHHHHHHhCccceeee-eeCChhhhCCCC
Confidence 358999999999999999999998432 1 134555554 45554 334444566665
No 328
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=20.99 E-value=1.7e+02 Score=20.05 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=41.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHhccCCeeEeEEEEccCCCcceEEEEEeC----ChHHHHHHHHhCCCc
Q 012356 303 CSIYVRNLAFTTTSTELEEAFKIFGPIKKNGVQVRSNKQGYCFGFVAFE----TPGSVQSALEASPIL 366 (465)
Q Consensus 303 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~~~v~~~~~~~~~gfaFV~F~----~~~~a~~Al~~~~~~ 366 (465)
..+.|.++.-.--...|++.+.+...|..+.+.+.. +-+.|+|. +.+.+.++|+..|..
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~-----~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ-----NRADVVFDPNLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG-----TEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC-----CEEEEEECCCCCCHHHHHHHHHHCCCc
Confidence 456777776555567889999988788876665543 34788885 456777787776543
Done!